---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '14251'
abstract:
- lang: eng
  text: The phytohormone auxin and its directional transport through tissues play
    a fundamental role in development of higher plants. This polar auxin transport
    predominantly relies on PIN-FORMED (PIN) auxin exporters. Hence, PIN polarization
    is crucial for development, but its evolution during the rise of morphological
    complexity in land plants remains unclear. Here, we performed a cross-species
    investigation by observing the trafficking and localization of endogenous and
    exogenous PINs in two bryophytes, Physcomitrium patens and Marchantia polymorpha,
    and in the flowering plant Arabidopsis thaliana. We confirmed that the GFP fusion
    did not compromise the auxin export function of all examined PINs by using radioactive
    auxin export assay and by observing the phenotypic changes in transgenic bryophytes.
    Endogenous PINs polarize to filamentous apices, while exogenous Arabidopsis PINs
    distribute symmetrically on the membrane in both bryophytes. In Arabidopsis root
    epidermis, bryophytic PINs show no defined polarity. Pharmacological interference
    revealed a strong cytoskeleton dependence of bryophytic but not Arabidopsis PIN
    polarization. The divergence of PIN polarization and trafficking is also observed
    within the bryophyte clade and between tissues of individual species. These results
    collectively reveal a divergence of PIN trafficking and polarity mechanisms throughout
    land plant evolution and a co-evolution of PIN sequence-based and cell-based polarity
    mechanisms.
acknowledgement: This work was supported by the ERC grant (PR1023ERC02) to H. T. and
  J. F., and by the ministry of science and technology (grant number 110-2636-B-005-001)
  to K. J. L.
article_number: '100669'
article_processing_charge: Yes
article_type: original
author:
- first_name: Han
  full_name: Tang, Han
  id: 19BDF720-25A0-11EA-AC6E-928F3DDC885E
  last_name: Tang
  orcid: 0000-0001-6152-6637
- first_name: KJ
  full_name: Lu, KJ
  last_name: Lu
- first_name: Y
  full_name: Zhang, Y
  last_name: Zhang
- first_name: YL
  full_name: Cheng, YL
  last_name: Cheng
- first_name: SL
  full_name: Tu, SL
  last_name: Tu
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Tang H, Lu K, Zhang Y, Cheng Y, Tu S, Friml J. Divergence of trafficking and
    polarization mechanisms for PIN auxin transporters during land plant evolution.
    <i>Plant Communications</i>. 2024;5(1). doi:<a href="https://doi.org/10.1016/j.xplc.2023.100669">10.1016/j.xplc.2023.100669</a>
  apa: Tang, H., Lu, K., Zhang, Y., Cheng, Y., Tu, S., &#38; Friml, J. (2024). Divergence
    of trafficking and polarization mechanisms for PIN auxin transporters during land
    plant evolution. <i>Plant Communications</i>. Elsevier. <a href="https://doi.org/10.1016/j.xplc.2023.100669">https://doi.org/10.1016/j.xplc.2023.100669</a>
  chicago: Tang, Han, KJ Lu, Y Zhang, YL Cheng, SL Tu, and Jiří Friml. “Divergence
    of Trafficking and Polarization Mechanisms for PIN Auxin Transporters during Land
    Plant Evolution.” <i>Plant Communications</i>. Elsevier, 2024. <a href="https://doi.org/10.1016/j.xplc.2023.100669">https://doi.org/10.1016/j.xplc.2023.100669</a>.
  ieee: H. Tang, K. Lu, Y. Zhang, Y. Cheng, S. Tu, and J. Friml, “Divergence of trafficking
    and polarization mechanisms for PIN auxin transporters during land plant evolution,”
    <i>Plant Communications</i>, vol. 5, no. 1. Elsevier, 2024.
  ista: Tang H, Lu K, Zhang Y, Cheng Y, Tu S, Friml J. 2024. Divergence of trafficking
    and polarization mechanisms for PIN auxin transporters during land plant evolution.
    Plant Communications. 5(1), 100669.
  mla: Tang, Han, et al. “Divergence of Trafficking and Polarization Mechanisms for
    PIN Auxin Transporters during Land Plant Evolution.” <i>Plant Communications</i>,
    vol. 5, no. 1, 100669, Elsevier, 2024, doi:<a href="https://doi.org/10.1016/j.xplc.2023.100669">10.1016/j.xplc.2023.100669</a>.
  short: H. Tang, K. Lu, Y. Zhang, Y. Cheng, S. Tu, J. Friml, Plant Communications
    5 (2024).
corr_author: '1'
date_created: 2023-09-01T11:32:02Z
date_published: 2024-01-08T00:00:00Z
date_updated: 2025-08-05T13:27:26Z
day: '08'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1016/j.xplc.2023.100669
ec_funded: 1
external_id:
  isi:
  - '001158054500001'
  pmid:
  - '37528584'
file:
- access_level: open_access
  checksum: edbc44c6d4a394d2bf70f92fdbb08f0a
  content_type: application/pdf
  creator: dernst
  date_created: 2024-01-30T12:59:57Z
  date_updated: 2024-01-30T12:59:57Z
  file_id: '14911'
  file_name: 2023_PlantCommunications_Tang.pdf
  file_size: 2825565
  relation: main_file
  success: 1
file_date_updated: 2024-01-30T12:59:57Z
has_accepted_license: '1'
intvolume: '         5'
isi: 1
issue: '1'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 261099A6-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '742985'
  name: Tracing Evolution of Auxin Transport and Polarity in Plants
publication: Plant Communications
publication_identifier:
  issn:
  - 2590-3462
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Divergence of trafficking and polarization mechanisms for PIN auxin transporters
  during land plant evolution
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 5
year: '2024'
...
---
OA_place: publisher
OA_type: hybrid
_id: '14257'
abstract:
- lang: eng
  text: Mapping the complex and dense arrangement of cells and their connectivity
    in brain tissue demands nanoscale spatial resolution imaging. Super-resolution
    optical microscopy excels at visualizing specific molecules and individual cells
    but fails to provide tissue context. Here we developed Comprehensive Analysis
    of Tissues across Scales (CATS), a technology to densely map brain tissue architecture
    from millimeter regional to nanometer synaptic scales in diverse chemically fixed
    brain preparations, including rodent and human. CATS uses fixation-compatible
    extracellular labeling and optical imaging, including stimulated emission depletion
    or expansion microscopy, to comprehensively delineate cellular structures. It
    enables three-dimensional reconstruction of single synapses and mapping of synaptic
    connectivity by identification and analysis of putative synaptic cleft regions.
    Applying CATS to the mouse hippocampal mossy fiber circuitry, we reconstructed
    and quantified the synaptic input and output structure of identified neurons.
    We furthermore demonstrate applicability to clinically derived human tissue samples,
    including formalin-fixed paraffin-embedded routine diagnostic specimens, for visualizing
    the cellular architecture of brain tissue in health and disease.
acknowledged_ssus:
- _id: ScienComp
- _id: Bio
- _id: PreCl
- _id: LifeSc
- _id: M-Shop
- _id: E-Lib
acknowledgement: 'We thank J. Vorlaufer, N. Agudelo-Dueñas, W. Jahr and A. Wartak
  for microscope maintenance and troubleshooting; C. Kreuzinger, A. Freeman and I.
  Erber for technical assistance; and M. Tomschik for support with obtaining human
  samples. We gratefully acknowledge E. Miguel for setting up webKnossos and M. Šuplata
  for computational support and hardware control. We are grateful to R. Shigemoto
  and B. Bickel for generous support and M. Sixt and S. Boyd (Stanford University)
  for discussions and critical reading of the paper. PSD95-HaloTag mice were kindly
  provided by S. Grant (University of Edinburgh). We acknowledge expert support by
  Institute of Science and Technology Austria’s scientific computing, imaging and
  optics, preclinical and lab support facilities and by the Miba machine shop and
  library. We gratefully acknowledge funding by the following sources: Austrian Science
  Fund (FWF) grant I3600-B27 (J.G.D.); Austrian Science Fund (FWF) grant DK W1232
  (J.G.D. and J.M.M.); Austrian Science Fund (FWF) grant Z 312-B27, Wittgenstein award
  (P.J.); Austrian Science Fund (FWF) projects I4685-B, I6565-B (SYNABS) and DOC 33-B27
  (R.H.); Gesellschaft für Forschungsförderung NÖ (NFB) grant LSC18-022 (J.G.D.);
  European Union’s Horizon 2020 research and innovation programme, European Research
  Council (ERC) grant 715508 – REVERSEAUTISM (G.N.); European Union’s Horizon 2020
  research and innovation programme, European Research Council (ERC) grant 692692
  – GIANTSYN (P.J.); Marie Skłodowska-Curie Actions Fellowship GA no. 665385 under
  the EU Horizon 2020 program (J.M.M. and J.L.); and Marie Skłodowska-Curie Actions
  Individual Fellowship no. 101026635 under the EU Horizon 2020 program (J.F.W.).'
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Julia M
  full_name: Michalska, Julia M
  id: 443DB6DE-F248-11E8-B48F-1D18A9856A87
  last_name: Michalska
  orcid: 0000-0003-3862-1235
- first_name: Julia
  full_name: Lyudchik, Julia
  id: 46E28B80-F248-11E8-B48F-1D18A9856A87
  last_name: Lyudchik
- first_name: Philipp
  full_name: Velicky, Philipp
  id: 39BDC62C-F248-11E8-B48F-1D18A9856A87
  last_name: Velicky
  orcid: 0000-0002-2340-7431
- first_name: Hana
  full_name: Korinkova, Hana
  id: ee3cb6ca-ec98-11ea-ae11-ff703e2254ed
  last_name: Korinkova
- first_name: Jake
  full_name: Watson, Jake
  id: 63836096-4690-11EA-BD4E-32803DDC885E
  last_name: Watson
  orcid: 0000-0002-8698-3823
- first_name: Alban
  full_name: Cenameri, Alban
  id: 9ac8f577-2357-11eb-997a-e566c5550886
  last_name: Cenameri
- first_name: Christoph M
  full_name: Sommer, Christoph M
  id: 4DF26D8C-F248-11E8-B48F-1D18A9856A87
  last_name: Sommer
  orcid: 0000-0003-1216-9105
- first_name: Nicole
  full_name: Amberg, Nicole
  id: 4CD6AAC6-F248-11E8-B48F-1D18A9856A87
  last_name: Amberg
  orcid: 0000-0002-3183-8207
- first_name: Alessandro
  full_name: Venturino, Alessandro
  id: 41CB84B2-F248-11E8-B48F-1D18A9856A87
  last_name: Venturino
  orcid: 0000-0003-2356-9403
- first_name: Karl
  full_name: Roessler, Karl
  last_name: Roessler
- first_name: Thomas
  full_name: Czech, Thomas
  last_name: Czech
- first_name: Romana
  full_name: Höftberger, Romana
  last_name: Höftberger
- first_name: Sandra
  full_name: Siegert, Sandra
  id: 36ACD32E-F248-11E8-B48F-1D18A9856A87
  last_name: Siegert
  orcid: 0000-0001-8635-0877
- first_name: Gaia
  full_name: Novarino, Gaia
  id: 3E57A680-F248-11E8-B48F-1D18A9856A87
  last_name: Novarino
  orcid: 0000-0002-7673-7178
- first_name: Peter M
  full_name: Jonas, Peter M
  id: 353C1B58-F248-11E8-B48F-1D18A9856A87
  last_name: Jonas
  orcid: 0000-0001-5001-4804
- first_name: Johann G
  full_name: Danzl, Johann G
  id: 42EFD3B6-F248-11E8-B48F-1D18A9856A87
  last_name: Danzl
  orcid: 0000-0001-8559-3973
citation:
  ama: Michalska JM, Lyudchik J, Velicky P, et al. Imaging brain tissue architecture
    across millimeter to nanometer scales. <i>Nature Biotechnology</i>. 2024;42:1051-1064.
    doi:<a href="https://doi.org/10.1038/s41587-023-01911-8">10.1038/s41587-023-01911-8</a>
  apa: Michalska, J. M., Lyudchik, J., Velicky, P., Korinkova, H., Watson, J., Cenameri,
    A., … Danzl, J. G. (2024). Imaging brain tissue architecture across millimeter
    to nanometer scales. <i>Nature Biotechnology</i>. Springer Nature. <a href="https://doi.org/10.1038/s41587-023-01911-8">https://doi.org/10.1038/s41587-023-01911-8</a>
  chicago: Michalska, Julia M, Julia Lyudchik, Philipp Velicky, Hana Korinkova, Jake
    Watson, Alban Cenameri, Christoph M Sommer, et al. “Imaging Brain Tissue Architecture
    across Millimeter to Nanometer Scales.” <i>Nature Biotechnology</i>. Springer
    Nature, 2024. <a href="https://doi.org/10.1038/s41587-023-01911-8">https://doi.org/10.1038/s41587-023-01911-8</a>.
  ieee: J. M. Michalska <i>et al.</i>, “Imaging brain tissue architecture across millimeter
    to nanometer scales,” <i>Nature Biotechnology</i>, vol. 42. Springer Nature, pp.
    1051–1064, 2024.
  ista: Michalska JM, Lyudchik J, Velicky P, Korinkova H, Watson J, Cenameri A, Sommer
    CM, Amberg N, Venturino A, Roessler K, Czech T, Höftberger R, Siegert S, Novarino
    G, Jonas PM, Danzl JG. 2024. Imaging brain tissue architecture across millimeter
    to nanometer scales. Nature Biotechnology. 42, 1051–1064.
  mla: Michalska, Julia M., et al. “Imaging Brain Tissue Architecture across Millimeter
    to Nanometer Scales.” <i>Nature Biotechnology</i>, vol. 42, Springer Nature, 2024,
    pp. 1051–64, doi:<a href="https://doi.org/10.1038/s41587-023-01911-8">10.1038/s41587-023-01911-8</a>.
  short: J.M. Michalska, J. Lyudchik, P. Velicky, H. Korinkova, J. Watson, A. Cenameri,
    C.M. Sommer, N. Amberg, A. Venturino, K. Roessler, T. Czech, R. Höftberger, S.
    Siegert, G. Novarino, P.M. Jonas, J.G. Danzl, Nature Biotechnology 42 (2024) 1051–1064.
corr_author: '1'
date_created: 2023-09-03T22:01:15Z
date_published: 2024-07-01T00:00:00Z
date_updated: 2026-04-14T08:34:35Z
day: '01'
ddc:
- '570'
department:
- _id: SaSi
- _id: GaNo
- _id: PeJo
- _id: JoDa
- _id: Bio
- _id: RySh
doi: 10.1038/s41587-023-01911-8
ec_funded: 1
external_id:
  isi:
  - '001065254200001'
  pmid:
  - '37653226'
file:
- access_level: open_access
  checksum: 57d5fafb16f02dcb9f7dddb1bd7e2a71
  content_type: application/pdf
  creator: dernst
  date_created: 2025-01-09T07:48:01Z
  date_updated: 2025-01-09T07:48:01Z
  file_id: '18784'
  file_name: 2024_NatureBiotech_Michalska.pdf
  file_size: 26065165
  relation: main_file
  success: 1
file_date_updated: 2025-01-09T07:48:01Z
has_accepted_license: '1'
intvolume: '        42'
isi: 1
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: 1051-1064
pmid: 1
project:
- _id: 265CB4D0-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I03600
  name: Optical control of synaptic function via adhesion molecules
- _id: 2548AE96-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: W1232
  name: Molecular Drug Targets
- _id: 25C5A090-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: Z00312
  name: Synaptic communication in neuronal microcircuits
- _id: 23889792-32DE-11EA-91FC-C7463DDC885E
  grant_number: LS18-022
  name: High content imaging to decode human immune cell interactions in health and
    allergic disease
- _id: 25444568-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '715508'
  name: Probing the Reversibility of Autism Spectrum Disorders by Employing in vivo
    and in vitro Models
- _id: 25B7EB9E-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '692692'
  name: Biophysics and circuit function of a giant cortical glutamatergic synapse
- _id: 2564DBCA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '665385'
  name: International IST Doctoral Program
- _id: fc2be41b-9c52-11eb-aca3-faa90aa144e9
  call_identifier: H2020
  grant_number: '101026635'
  name: Synaptic computations of the hippocampal CA3 circuitry
publication: Nature Biotechnology
publication_identifier:
  eissn:
  - 1546-1696
  issn:
  - 1087-0156
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  link:
  - relation: software
    url: https://github.com/danzllab/CATS
  record:
  - id: '18660'
    relation: dissertation_contains
    status: deleted
  - id: '13126'
    relation: research_data
    status: public
  - id: '18674'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Imaging brain tissue architecture across millimeter to nanometer scales
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 42
year: '2024'
...
---
_id: '14345'
abstract:
- lang: eng
  text: For a locally finite set in R2, the order-k Brillouin tessellations form an
    infinite sequence of convex face-to-face tilings of the plane. If the set is coarsely
    dense and generic, then the corresponding infinite sequences of minimum and maximum
    angles are both monotonic in k. As an example, a stationary Poisson point process
    in R2  is locally finite, coarsely dense, and generic with probability one. For
    such a set, the distributions of angles in the Voronoi tessellations, Delaunay
    mosaics, and Brillouin tessellations are independent of the order and can be derived
    from the formula for angles in order-1 Delaunay mosaics given by Miles (Math.
    Biosci. 6, 85–127 (1970)).
acknowledgement: Work by all authors but A. Garber is supported by the European Research
  Council (ERC), Grant No. 788183, by the Wittgenstein Prize, Austrian Science Fund
  (FWF), Grant No. Z 342-N31, and by the DFG Collaborative Research Center TRR 109,
  Austrian Science Fund (FWF), Grant No. I 02979-N35. Work by A. Garber is partially
  supported by the Alexander von Humboldt Foundation.
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: Alexey
  full_name: Garber, Alexey
  last_name: Garber
- first_name: Mohadese
  full_name: Ghafari, Mohadese
  last_name: Ghafari
- first_name: Teresa
  full_name: Heiss, Teresa
  id: 4879BB4E-F248-11E8-B48F-1D18A9856A87
  last_name: Heiss
  orcid: 0000-0002-1780-2689
- first_name: Morteza
  full_name: Saghafian, Morteza
  id: f86f7148-b140-11ec-9577-95435b8df824
  last_name: Saghafian
citation:
  ama: Edelsbrunner H, Garber A, Ghafari M, Heiss T, Saghafian M. On angles in higher
    order Brillouin tessellations and related tilings in the plane. <i>Discrete and
    Computational Geometry</i>. 2024;72:29-48. doi:<a href="https://doi.org/10.1007/s00454-023-00566-1">10.1007/s00454-023-00566-1</a>
  apa: Edelsbrunner, H., Garber, A., Ghafari, M., Heiss, T., &#38; Saghafian, M. (2024).
    On angles in higher order Brillouin tessellations and related tilings in the plane.
    <i>Discrete and Computational Geometry</i>. Springer Nature. <a href="https://doi.org/10.1007/s00454-023-00566-1">https://doi.org/10.1007/s00454-023-00566-1</a>
  chicago: Edelsbrunner, Herbert, Alexey Garber, Mohadese Ghafari, Teresa Heiss, and
    Morteza Saghafian. “On Angles in Higher Order Brillouin Tessellations and Related
    Tilings in the Plane.” <i>Discrete and Computational Geometry</i>. Springer Nature,
    2024. <a href="https://doi.org/10.1007/s00454-023-00566-1">https://doi.org/10.1007/s00454-023-00566-1</a>.
  ieee: H. Edelsbrunner, A. Garber, M. Ghafari, T. Heiss, and M. Saghafian, “On angles
    in higher order Brillouin tessellations and related tilings in the plane,” <i>Discrete
    and Computational Geometry</i>, vol. 72. Springer Nature, pp. 29–48, 2024.
  ista: Edelsbrunner H, Garber A, Ghafari M, Heiss T, Saghafian M. 2024. On angles
    in higher order Brillouin tessellations and related tilings in the plane. Discrete
    and Computational Geometry. 72, 29–48.
  mla: Edelsbrunner, Herbert, et al. “On Angles in Higher Order Brillouin Tessellations
    and Related Tilings in the Plane.” <i>Discrete and Computational Geometry</i>,
    vol. 72, Springer Nature, 2024, pp. 29–48, doi:<a href="https://doi.org/10.1007/s00454-023-00566-1">10.1007/s00454-023-00566-1</a>.
  short: H. Edelsbrunner, A. Garber, M. Ghafari, T. Heiss, M. Saghafian, Discrete
    and Computational Geometry 72 (2024) 29–48.
corr_author: '1'
date_created: 2023-09-17T22:01:10Z
date_published: 2024-07-01T00:00:00Z
date_updated: 2025-04-23T08:41:59Z
day: '01'
ddc:
- '510'
department:
- _id: HeEd
doi: 10.1007/s00454-023-00566-1
ec_funded: 1
external_id:
  arxiv:
  - '2204.01076'
  isi:
  - '001060727600004'
  pmid:
  - '39610762'
file:
- access_level: open_access
  checksum: b207b4e00f904e8ea8a30e24f0251f79
  content_type: application/pdf
  creator: dernst
  date_created: 2024-07-22T09:43:19Z
  date_updated: 2024-07-22T09:43:19Z
  file_id: '17301'
  file_name: 2024_DiscreteComputGeom_Edelsbrunner.pdf
  file_size: 892019
  relation: main_file
  success: 1
file_date_updated: 2024-07-22T09:43:19Z
has_accepted_license: '1'
intvolume: '        72'
isi: 1
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: 29-48
pmid: 1
project:
- _id: 266A2E9E-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '788183'
  name: Alpha Shape Theory Extended
- _id: 268116B8-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: Z00342
  name: Mathematics, Computer Science
- _id: 2561EBF4-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I02979-N35
  name: Persistence and stability of geometric complexes
publication: Discrete and Computational Geometry
publication_identifier:
  eissn:
  - 1432-0444
  issn:
  - 0179-5376
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: On angles in higher order Brillouin tessellations and related tilings in the
  plane
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 72
year: '2024'
...
---
_id: '14400'
abstract:
- lang: eng
  text: "We consider the problem of computing the maximal probability of satisfying
    an \r\n-regular specification for stochastic, continuous-state, nonlinear systems
    evolving in discrete time. The problem reduces, after automata-theoretic constructions,
    to finding the maximal probability of satisfying a parity condition on a (possibly
    hybrid) state space. While characterizing the exact satisfaction probability is
    open, we show that a lower bound on this probability can be obtained by (I) computing
    an under-approximation of the qualitative winning region, i.e., states from which
    the parity condition can be enforced almost surely, and (II) computing the maximal
    probability of reaching this qualitative winning region.\r\nThe heart of our approach
    is a technique to symbolically compute the under-approximation of the qualitative
    winning region in step (I) via a finite-state abstraction of the original system
    as a \r\n-player parity game. Our abstraction procedure uses only the support
    of the probabilistic evolution; it does not use precise numerical transition probabilities.
    We prove that the winning set in the abstract -player game induces an under-approximation
    of the qualitative winning region in the original synthesis problem, along with
    a policy to solve it. By combining these contributions with (a) a symbolic fixpoint
    algorithm to solve \r\n-player games and (b) existing techniques for reachability
    policy synthesis in stochastic nonlinear systems, we get an abstraction-based
    algorithm for finding a lower bound on the maximal satisfaction probability.\r\nWe
    have implemented the abstraction-based algorithm in Mascot-SDS, where we combined
    the outlined abstraction step with our tool Genie (Majumdar et al., 2023) that
    solves \r\n-player parity games (through a reduction to Rabin games) more efficiently
    than existing algorithms. We evaluated our implementation on the nonlinear model
    of a perturbed bistable switch from the literature. We show empirically that the
    lower bound on the winning region computed by our approach is precise, by comparing
    against an over-approximation of the qualitative winning region. Moreover, our
    implementation outperforms a recently proposed tool for solving this problem by
    a large margin."
acknowledgement: "We thank Daniel Hausmann and Nir Piterman for their valuable comments
  on an earlier version of the manuscript of our other paper [22] where we present,
  among other things, the parity fixpoint for 2 1/2-player games (for a slightly more
  general class of games) with a different and indirect proof of correctness. Based
  on their comments we observed that, unlike the other fixpoints that we present in
  [22], the parity fixpoint does not follow the exact same structure as its counterpart
  for 2-player games, which we also use int his paper.\r\nWe also thank Thejaswini
  Raghavan for observing that our symbolic parity fixpoint algorithm can be solved
  in quasi-polynomial time using recent improved algorithms for solving \r\n-calculus
  expressions. This significantly improved the complexity bounds of our algorithm
  in this paper.\r\nThe work of R. Majumdar and A.-K. Schmuck are partially supported
  by DFG, Germany project 389792660 TRR 248–CPEC. A.-K. Schmuck is additionally funded
  through DFG, Germany project (SCHM 3541/1-1). K. Mallik is supported by the ERC
  project ERC-2020-AdG 101020093. S. Soudjani is supported by the following projects:
  EPSRC EP/V043676/1, EIC 101070802, and ERC 101089047."
article_number: '101430'
article_processing_charge: Yes (in subscription journal)
article_type: original
arxiv: 1
author:
- first_name: Rupak
  full_name: Majumdar, Rupak
  last_name: Majumdar
- first_name: Kaushik
  full_name: Mallik, Kaushik
  id: 0834ff3c-6d72-11ec-94e0-b5b0a4fb8598
  last_name: Mallik
  orcid: 0000-0001-9864-7475
- first_name: Anne Kathrin
  full_name: Schmuck, Anne Kathrin
  last_name: Schmuck
- first_name: Sadegh
  full_name: Soudjani, Sadegh
  last_name: Soudjani
citation:
  ama: 'Majumdar R, Mallik K, Schmuck AK, Soudjani S. Symbolic control for stochastic
    systems via finite parity games. <i>Nonlinear Analysis: Hybrid Systems</i>. 2024;51(2).
    doi:<a href="https://doi.org/10.1016/j.nahs.2023.101430">10.1016/j.nahs.2023.101430</a>'
  apa: 'Majumdar, R., Mallik, K., Schmuck, A. K., &#38; Soudjani, S. (2024). Symbolic
    control for stochastic systems via finite parity games. <i>Nonlinear Analysis:
    Hybrid Systems</i>. Elsevier. <a href="https://doi.org/10.1016/j.nahs.2023.101430">https://doi.org/10.1016/j.nahs.2023.101430</a>'
  chicago: 'Majumdar, Rupak, Kaushik Mallik, Anne Kathrin Schmuck, and Sadegh Soudjani.
    “Symbolic Control for Stochastic Systems via Finite Parity Games.” <i>Nonlinear
    Analysis: Hybrid Systems</i>. Elsevier, 2024. <a href="https://doi.org/10.1016/j.nahs.2023.101430">https://doi.org/10.1016/j.nahs.2023.101430</a>.'
  ieee: 'R. Majumdar, K. Mallik, A. K. Schmuck, and S. Soudjani, “Symbolic control
    for stochastic systems via finite parity games,” <i>Nonlinear Analysis: Hybrid
    Systems</i>, vol. 51, no. 2. Elsevier, 2024.'
  ista: 'Majumdar R, Mallik K, Schmuck AK, Soudjani S. 2024. Symbolic control for
    stochastic systems via finite parity games. Nonlinear Analysis: Hybrid Systems.
    51(2), 101430.'
  mla: 'Majumdar, Rupak, et al. “Symbolic Control for Stochastic Systems via Finite
    Parity Games.” <i>Nonlinear Analysis: Hybrid Systems</i>, vol. 51, no. 2, 101430,
    Elsevier, 2024, doi:<a href="https://doi.org/10.1016/j.nahs.2023.101430">10.1016/j.nahs.2023.101430</a>.'
  short: 'R. Majumdar, K. Mallik, A.K. Schmuck, S. Soudjani, Nonlinear Analysis: Hybrid
    Systems 51 (2024).'
corr_author: '1'
date_created: 2023-10-08T22:01:15Z
date_published: 2024-02-01T00:00:00Z
date_updated: 2025-04-14T07:55:55Z
day: '01'
ddc:
- '000'
department:
- _id: ToHe
doi: 10.1016/j.nahs.2023.101430
ec_funded: 1
external_id:
  arxiv:
  - '2101.00834'
  isi:
  - '001093188100001'
file:
- access_level: open_access
  checksum: 4eab70274d1004ea411f7f0e74c033ac
  content_type: application/pdf
  creator: dernst
  date_created: 2024-07-16T10:26:41Z
  date_updated: 2024-07-16T10:26:41Z
  file_id: '17258'
  file_name: 2024_NonlinearAnalysis_Majumdar.pdf
  file_size: 1787569
  relation: main_file
  success: 1
file_date_updated: 2024-07-16T10:26:41Z
has_accepted_license: '1'
intvolume: '        51'
isi: 1
issue: '2'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
project:
- _id: 62781420-2b32-11ec-9570-8d9b63373d4d
  call_identifier: H2020
  grant_number: '101020093'
  name: Vigilant Algorithmic Monitoring of Software
publication: 'Nonlinear Analysis: Hybrid Systems'
publication_identifier:
  issn:
  - 1751-570X
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Symbolic control for stochastic systems via finite parity games
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 51
year: '2024'
...
---
_id: '14408'
abstract:
- lang: eng
  text: "We prove that the mesoscopic linear statistics ∑if(na(σi−z0)) of the eigenvalues
    {σi}i of large n×n non-Hermitian random matrices with complex centred i.i.d. entries
    are asymptotically Gaussian for any H20-functions f around any point z0 in the
    bulk of the spectrum on any mesoscopic scale 0<a<1/2. This extends our previous
    result (Cipolloni et al. in Commun Pure Appl Math, 2019. arXiv:1912.04100), that
    was valid on the macroscopic scale, a=0\r\n, to cover the entire mesoscopic regime.
    The main novelty is a local law for the product of resolvents for the Hermitization
    of X at spectral parameters z1,z2 with an improved error term in the entire mesoscopic
    regime |z1−z2|≫n−1/2. The proof is dynamical; it relies on a recursive tandem
    of the characteristic flow method and the Green function comparison idea combined
    with a separation of the unstable mode of the underlying stability operator."
acknowledgement: "The authors are grateful to Joscha Henheik for his help with the
  formulas in Appendix B.\r\nLászló Erdős supported by ERC Advanced Grant “RMTBeyond”
  No. 101020331. Dominik Schröder supported by the SNSF Ambizione Grant PZ00P2 209089."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Giorgio
  full_name: Cipolloni, Giorgio
  id: 42198EFA-F248-11E8-B48F-1D18A9856A87
  last_name: Cipolloni
  orcid: 0000-0002-4901-7992
- first_name: László
  full_name: Erdös, László
  id: 4DBD5372-F248-11E8-B48F-1D18A9856A87
  last_name: Erdös
  orcid: 0000-0001-5366-9603
- first_name: Dominik J
  full_name: Schröder, Dominik J
  id: 408ED176-F248-11E8-B48F-1D18A9856A87
  last_name: Schröder
  orcid: 0000-0002-2904-1856
citation:
  ama: Cipolloni G, Erdös L, Schröder DJ. Mesoscopic central limit theorem for non-Hermitian
    random matrices. <i>Probability Theory and Related Fields</i>. 2024;188:1131-1182.
    doi:<a href="https://doi.org/10.1007/s00440-023-01229-1">10.1007/s00440-023-01229-1</a>
  apa: Cipolloni, G., Erdös, L., &#38; Schröder, D. J. (2024). Mesoscopic central
    limit theorem for non-Hermitian random matrices. <i>Probability Theory and Related
    Fields</i>. Springer Nature. <a href="https://doi.org/10.1007/s00440-023-01229-1">https://doi.org/10.1007/s00440-023-01229-1</a>
  chicago: Cipolloni, Giorgio, László Erdös, and Dominik J Schröder. “Mesoscopic Central
    Limit Theorem for Non-Hermitian Random Matrices.” <i>Probability Theory and Related
    Fields</i>. Springer Nature, 2024. <a href="https://doi.org/10.1007/s00440-023-01229-1">https://doi.org/10.1007/s00440-023-01229-1</a>.
  ieee: G. Cipolloni, L. Erdös, and D. J. Schröder, “Mesoscopic central limit theorem
    for non-Hermitian random matrices,” <i>Probability Theory and Related Fields</i>,
    vol. 188. Springer Nature, pp. 1131–1182, 2024.
  ista: Cipolloni G, Erdös L, Schröder DJ. 2024. Mesoscopic central limit theorem
    for non-Hermitian random matrices. Probability Theory and Related Fields. 188,
    1131–1182.
  mla: Cipolloni, Giorgio, et al. “Mesoscopic Central Limit Theorem for Non-Hermitian
    Random Matrices.” <i>Probability Theory and Related Fields</i>, vol. 188, Springer
    Nature, 2024, pp. 1131–82, doi:<a href="https://doi.org/10.1007/s00440-023-01229-1">10.1007/s00440-023-01229-1</a>.
  short: G. Cipolloni, L. Erdös, D.J. Schröder, Probability Theory and Related Fields
    188 (2024) 1131–1182.
date_created: 2023-10-08T22:01:17Z
date_published: 2024-04-01T00:00:00Z
date_updated: 2025-08-05T13:28:15Z
day: '01'
department:
- _id: LaEr
doi: 10.1007/s00440-023-01229-1
ec_funded: 1
external_id:
  arxiv:
  - '2210.12060'
  isi:
  - '001118972500001'
intvolume: '       188'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2210.12060
month: '04'
oa: 1
oa_version: Preprint
page: 1131-1182
project:
- _id: 62796744-2b32-11ec-9570-940b20777f1d
  call_identifier: H2020
  grant_number: '101020331'
  name: Random matrices beyond Wigner-Dyson-Mehta
publication: Probability Theory and Related Fields
publication_identifier:
  eissn:
  - 1432-2064
  issn:
  - 0178-8051
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Mesoscopic central limit theorem for non-Hermitian random matrices
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 188
year: '2024'
...
---
_id: '14435'
abstract:
- lang: eng
  text: Low‐cost, safe, and environmental‐friendly rechargeable aqueous zinc‐ion batteries
    (ZIBs) are promising as next‐generation energy storage devices for wearable electronics
    among other applications. However, sluggish ionic transport kinetics and the unstable
    electrode structure during ionic insertion/extraction hampers their deployment.
    Herein,  we propose a new cathode material based on a layered metal chalcogenide
    (LMC), bismuth telluride (Bi<jats:sub>2</jats:sub>Te<jats:sub>3</jats:sub>), coated
    with polypyrrole (PPy). Taking advantage of the PPy coating, the Bi<jats:sub>2</jats:sub>Te<jats:sub>3</jats:sub>@PPy
    composite presents strong ionic absorption affinity, high oxidation resistance,
    and high structural stability. The ZIBs based on Bi<jats:sub>2</jats:sub>Te<jats:sub>3</jats:sub>@PPy
    cathodes exhibit high capacities and ultra‐long lifespans of over 5000 cycles.
    They also present outstanding stability even under bending. In addition,  we analyze
    here the reaction mechanism using in situ X‐ray diffraction, X‐ray photoelectron
    spectroscopy, and computational tools and demonstrate that, in the aqueous system,
    Zn<jats:sup>2+</jats:sup> is not inserted into the cathode as previously assumed.
    In contrast, proton charge storage dominates the process. Overall, this work not
    only shows the great potential of LMCs as ZIBs cathode materials and the advantages
    of PPy coating, but also clarifies the charge/discharge mechanism in rechargeable
    ZIBs based on LMCs.
acknowledged_ssus:
- _id: EM-Fac
acknowledgement: G.Z. and Q.S. contributed equally to this work. This work was supported
  by the National Natural Science Foundation of China (52105329, 52175300) and the
  Heilongjiang Provincial Natural Science Foundation of China (LH2022E059). G.Z.,
  X.L., and C.Z. thank the China Scholarship Council (CSC) for the scholarship support.
  This research was supported by the Scientific Service Units of ISTA through resources
  provided by the Electron Microscopy Facility. S.H. and M.I. acknowledge funding
  by ISTA and Werner Siemens.
article_number: '2305128'
article_processing_charge: No
article_type: original
author:
- first_name: Guifang
  full_name: Zeng, Guifang
  last_name: Zeng
- first_name: Qing
  full_name: Sun, Qing
  last_name: Sun
- first_name: Sharona
  full_name: Horta, Sharona
  id: 03a7e858-01b1-11ec-8b71-99ae6c4a05bc
  last_name: Horta
- first_name: Shang
  full_name: Wang, Shang
  last_name: Wang
- first_name: Xuan
  full_name: Lu, Xuan
  last_name: Lu
- first_name: Chaoyue
  full_name: Zhang, Chaoyue
  last_name: Zhang
- first_name: Jing
  full_name: Li, Jing
  last_name: Li
- first_name: Junshan
  full_name: Li, Junshan
  last_name: Li
- first_name: Lijie
  full_name: Ci, Lijie
  last_name: Ci
- first_name: Yanhong
  full_name: Tian, Yanhong
  last_name: Tian
- first_name: Maria
  full_name: Ibáñez, Maria
  id: 43C61214-F248-11E8-B48F-1D18A9856A87
  last_name: Ibáñez
  orcid: 0000-0001-5013-2843
- first_name: Andreu
  full_name: Cabot, Andreu
  last_name: Cabot
citation:
  ama: 'Zeng G, Sun Q, Horta S, et al. A layered Bi2Te3@PPy cathode for aqueous zinc
    ion batteries: Mechanism and application in printed flexible batteries. <i>Advanced
    Materials</i>. 2024;36(1). doi:<a href="https://doi.org/10.1002/adma.202305128">10.1002/adma.202305128</a>'
  apa: 'Zeng, G., Sun, Q., Horta, S., Wang, S., Lu, X., Zhang, C., … Cabot, A. (2024).
    A layered Bi2Te3@PPy cathode for aqueous zinc ion batteries: Mechanism and application
    in printed flexible batteries. <i>Advanced Materials</i>. Wiley. <a href="https://doi.org/10.1002/adma.202305128">https://doi.org/10.1002/adma.202305128</a>'
  chicago: 'Zeng, Guifang, Qing Sun, Sharona Horta, Shang Wang, Xuan Lu, Chaoyue Zhang,
    Jing Li, et al. “A Layered Bi2Te3@PPy Cathode for Aqueous Zinc Ion Batteries:
    Mechanism and Application in Printed Flexible Batteries.” <i>Advanced Materials</i>.
    Wiley, 2024. <a href="https://doi.org/10.1002/adma.202305128">https://doi.org/10.1002/adma.202305128</a>.'
  ieee: 'G. Zeng <i>et al.</i>, “A layered Bi2Te3@PPy cathode for aqueous zinc ion
    batteries: Mechanism and application in printed flexible batteries,” <i>Advanced
    Materials</i>, vol. 36, no. 1. Wiley, 2024.'
  ista: 'Zeng G, Sun Q, Horta S, Wang S, Lu X, Zhang C, Li J, Li J, Ci L, Tian Y,
    Ibáñez M, Cabot A. 2024. A layered Bi2Te3@PPy cathode for aqueous zinc ion batteries:
    Mechanism and application in printed flexible batteries. Advanced Materials. 36(1),
    2305128.'
  mla: 'Zeng, Guifang, et al. “A Layered Bi2Te3@PPy Cathode for Aqueous Zinc Ion Batteries:
    Mechanism and Application in Printed Flexible Batteries.” <i>Advanced Materials</i>,
    vol. 36, no. 1, 2305128, Wiley, 2024, doi:<a href="https://doi.org/10.1002/adma.202305128">10.1002/adma.202305128</a>.'
  short: G. Zeng, Q. Sun, S. Horta, S. Wang, X. Lu, C. Zhang, J. Li, J. Li, L. Ci,
    Y. Tian, M. Ibáñez, A. Cabot, Advanced Materials 36 (2024).
date_created: 2023-10-17T10:53:56Z
date_published: 2024-01-04T00:00:00Z
date_updated: 2025-04-15T06:36:40Z
day: '04'
department:
- _id: MaIb
doi: 10.1002/adma.202305128
external_id:
  isi:
  - '001085681000001'
  pmid:
  - '37555532'
intvolume: '        36'
isi: 1
issue: '1'
keyword:
- Mechanical Engineering
- Mechanics of Materials
- General Materials Science
language:
- iso: eng
month: '01'
oa_version: None
pmid: 1
project:
- _id: 9B8F7476-BA93-11EA-9121-9846C619BF3A
  name: 'HighTE: The Werner Siemens Laboratory for the High Throughput Discovery of
    Semiconductors for Waste Heat Recovery'
publication: Advanced Materials
publication_identifier:
  eissn:
  - 1521-4095
  issn:
  - 0935-9648
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'A layered Bi2Te3@PPy cathode for aqueous zinc ion batteries: Mechanism and
  application in printed flexible batteries'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 36
year: '2024'
...
---
_id: '14447'
abstract:
- lang: eng
  text: "Auxin belongs among major phytohormones and governs multiple aspects of plant
    growth and development. The establishment of auxin concentration gradients, determines,
    among other processes, plant organ positioning and growth responses to environmental
    stimuli.\r\nHerein we report the synthesis of new NBD- or DNS-labelled IAA derivatives
    and the elucidation of their biological activity, fluorescence properties and
    subcellular accumulation patterns in planta. These novel compounds did not show
    auxin-like activity, but instead antagonized physiological auxin effects. The
    DNS-labelled derivatives FL5 and FL6 showed strong anti-auxin activity in roots
    and hypocotyls, which also occurred at the level of gene transcription as confirmed
    by quantitative PCR analysis. The auxin antagonism of our derivatives was further
    demonstrated in vitro using an SPR-based binding assay. The NBD-labelled compound
    FL4 with the best fluorescence properties proved to be unsuitable to study auxin
    accumulation patterns in planta. On the other hand, the strongest anti-auxin activity
    possessing compounds FL5 and FL6 could be useful to study binding mechanisms to
    auxin receptors and for manipulations of auxin-regulated processes."
acknowledgement: The authors would like to thank Karolína Kubiasová and Iñigo Saiz-Fernández
  for valuable scientific discussions. Open access publishing supported by the National
  Technical Library in Prague. This work was supported by the Palacký University Olomouc
  Young Researcher Grant Competition (JG_2020_002), by the Internal Grant Agency of
  Palacký University Olomouc (IGA_PrF_2023_016, IGA_PrF_2023_031), by the Ministry
  of Education, Youth and Sports of the Czech Republic through the European Regional
  Development Fund-Project Plants as a tool for sustainable global development (CZ.02.1.01/0.0/0.0/16_019/0000827)
  and the project Support of mobility at Palacký University Olomouc II. (CZ.02.2.69/0.0/0.0/18_053/0016919).
  The Biacore T200 SPR instrument was provided by the WISB Research Technology Facility
  within the School of Life Sciences, University of Warwick.
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Kristýna
  full_name: Bieleszová, Kristýna
  last_name: Bieleszová
- first_name: Pavel
  full_name: Hladík, Pavel
  last_name: Hladík
- first_name: Martin
  full_name: Kubala, Martin
  last_name: Kubala
- first_name: Richard
  full_name: Napier, Richard
  last_name: Napier
- first_name: Federica
  full_name: Brunoni, Federica
  last_name: Brunoni
- first_name: Zuzana
  full_name: Gelová, Zuzana
  id: 0AE74790-0E0B-11E9-ABC7-1ACFE5697425
  last_name: Gelová
  orcid: 0000-0003-4783-1752
- first_name: Lukas
  full_name: Fiedler, Lukas
  id: 7c417475-8972-11ed-ae7b-8b674ca26986
  last_name: Fiedler
- first_name: Ivan
  full_name: Kulich, Ivan
  id: 57a1567c-8314-11eb-9063-c9ddc3451a54
  last_name: Kulich
- first_name: Miroslav
  full_name: Strnad, Miroslav
  last_name: Strnad
- first_name: Karel
  full_name: Doležal, Karel
  last_name: Doležal
- first_name: Ondřej
  full_name: Novák, Ondřej
  last_name: Novák
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Asta
  full_name: Žukauskaitė, Asta
  last_name: Žukauskaitė
citation:
  ama: 'Bieleszová K, Hladík P, Kubala M, et al. New fluorescent auxin derivatives:
    Anti-auxin activity and accumulation patterns in Arabidopsis thaliana. <i>Plant
    Growth Regulation</i>. 2024;102:589-602. doi:<a href="https://doi.org/10.1007/s10725-023-01083-0">10.1007/s10725-023-01083-0</a>'
  apa: 'Bieleszová, K., Hladík, P., Kubala, M., Napier, R., Brunoni, F., Gelová, Z.,
    … Žukauskaitė, A. (2024). New fluorescent auxin derivatives: Anti-auxin activity
    and accumulation patterns in Arabidopsis thaliana. <i>Plant Growth Regulation</i>.
    Springer Nature. <a href="https://doi.org/10.1007/s10725-023-01083-0">https://doi.org/10.1007/s10725-023-01083-0</a>'
  chicago: 'Bieleszová, Kristýna, Pavel Hladík, Martin Kubala, Richard Napier, Federica
    Brunoni, Zuzana Gelová, Lukas Fiedler, et al. “New Fluorescent Auxin Derivatives:
    Anti-Auxin Activity and Accumulation Patterns in Arabidopsis Thaliana.” <i>Plant
    Growth Regulation</i>. Springer Nature, 2024. <a href="https://doi.org/10.1007/s10725-023-01083-0">https://doi.org/10.1007/s10725-023-01083-0</a>.'
  ieee: 'K. Bieleszová <i>et al.</i>, “New fluorescent auxin derivatives: Anti-auxin
    activity and accumulation patterns in Arabidopsis thaliana,” <i>Plant Growth Regulation</i>,
    vol. 102. Springer Nature, pp. 589–602, 2024.'
  ista: 'Bieleszová K, Hladík P, Kubala M, Napier R, Brunoni F, Gelová Z, Fiedler
    L, Kulich I, Strnad M, Doležal K, Novák O, Friml J, Žukauskaitė A. 2024. New fluorescent
    auxin derivatives: Anti-auxin activity and accumulation patterns in Arabidopsis
    thaliana. Plant Growth Regulation. 102, 589–602.'
  mla: 'Bieleszová, Kristýna, et al. “New Fluorescent Auxin Derivatives: Anti-Auxin
    Activity and Accumulation Patterns in Arabidopsis Thaliana.” <i>Plant Growth Regulation</i>,
    vol. 102, Springer Nature, 2024, pp. 589–602, doi:<a href="https://doi.org/10.1007/s10725-023-01083-0">10.1007/s10725-023-01083-0</a>.'
  short: K. Bieleszová, P. Hladík, M. Kubala, R. Napier, F. Brunoni, Z. Gelová, L.
    Fiedler, I. Kulich, M. Strnad, K. Doležal, O. Novák, J. Friml, A. Žukauskaitė,
    Plant Growth Regulation 102 (2024) 589–602.
date_created: 2023-10-22T22:01:15Z
date_published: 2024-04-01T00:00:00Z
date_updated: 2024-07-16T08:13:39Z
day: '01'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1007/s10725-023-01083-0
external_id:
  isi:
  - '001084334300001'
file:
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  date_created: 2024-07-16T08:13:24Z
  date_updated: 2024-07-16T08:13:24Z
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intvolume: '       102'
isi: 1
language:
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month: '04'
oa: 1
oa_version: Published Version
page: 589-602
publication: Plant Growth Regulation
publication_identifier:
  eissn:
  - 1573-5087
  issn:
  - 0167-6903
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'New fluorescent auxin derivatives: Anti-auxin activity and accumulation patterns
  in Arabidopsis thaliana'
tmp:
  image: /images/cc_by.png
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  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 102
year: '2024'
...
---
_id: '14451'
abstract:
- lang: eng
  text: 'We investigate the potential of Multi-Objective, Deep Reinforcement Learning
    for stock and cryptocurrency single-asset trading: in particular, we consider
    a Multi-Objective algorithm which generalizes the reward functions and discount
    factor (i.e., these components are not specified a priori, but incorporated in
    the learning process). Firstly, using several important assets (BTCUSD, ETHUSDT,
    XRPUSDT, AAPL, SPY, NIFTY50), we verify the reward generalization property of
    the proposed Multi-Objective algorithm, and provide preliminary statistical evidence
    showing increased predictive stability over the corresponding Single-Objective
    strategy. Secondly, we show that the Multi-Objective algorithm has a clear edge
    over the corresponding Single-Objective strategy when the reward mechanism is
    sparse (i.e., when non-null feedback is infrequent over time). Finally, we discuss
    the generalization properties with respect to the discount factor. The entirety
    of our code is provided in open-source format.'
acknowledgement: Open access funding provided by Università degli Studi di Trieste
  within the CRUI-CARE Agreement. Funding was provided by Austrian Science Fund (Grant
  No. F65), Horizon 2020 (Grant No. 754411) and Österreichische Forschungsförderungsgesellschaft.
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Federico
  full_name: Cornalba, Federico
  id: 2CEB641C-A400-11E9-A717-D712E6697425
  last_name: Cornalba
  orcid: 0000-0002-6269-5149
- first_name: Constantin
  full_name: Disselkamp, Constantin
  last_name: Disselkamp
- first_name: Davide
  full_name: Scassola, Davide
  last_name: Scassola
- first_name: Christopher
  full_name: Helf, Christopher
  last_name: Helf
citation:
  ama: 'Cornalba F, Disselkamp C, Scassola D, Helf C. Multi-objective reward generalization:
    Improving performance of Deep Reinforcement Learning for applications in single-asset
    trading. <i>Neural Computing and Applications</i>. 2024;36(2):617-637. doi:<a
    href="https://doi.org/10.1007/s00521-023-09033-7">10.1007/s00521-023-09033-7</a>'
  apa: 'Cornalba, F., Disselkamp, C., Scassola, D., &#38; Helf, C. (2024). Multi-objective
    reward generalization: Improving performance of Deep Reinforcement Learning for
    applications in single-asset trading. <i>Neural Computing and Applications</i>.
    Springer Nature. <a href="https://doi.org/10.1007/s00521-023-09033-7">https://doi.org/10.1007/s00521-023-09033-7</a>'
  chicago: 'Cornalba, Federico, Constantin Disselkamp, Davide Scassola, and Christopher
    Helf. “Multi-Objective Reward Generalization: Improving Performance of Deep Reinforcement
    Learning for Applications in Single-Asset Trading.” <i>Neural Computing and Applications</i>.
    Springer Nature, 2024. <a href="https://doi.org/10.1007/s00521-023-09033-7">https://doi.org/10.1007/s00521-023-09033-7</a>.'
  ieee: 'F. Cornalba, C. Disselkamp, D. Scassola, and C. Helf, “Multi-objective reward
    generalization: Improving performance of Deep Reinforcement Learning for applications
    in single-asset trading,” <i>Neural Computing and Applications</i>, vol. 36, no.
    2. Springer Nature, pp. 617–637, 2024.'
  ista: 'Cornalba F, Disselkamp C, Scassola D, Helf C. 2024. Multi-objective reward
    generalization: Improving performance of Deep Reinforcement Learning for applications
    in single-asset trading. Neural Computing and Applications. 36(2), 617–637.'
  mla: 'Cornalba, Federico, et al. “Multi-Objective Reward Generalization: Improving
    Performance of Deep Reinforcement Learning for Applications in Single-Asset Trading.”
    <i>Neural Computing and Applications</i>, vol. 36, no. 2, Springer Nature, 2024,
    pp. 617–37, doi:<a href="https://doi.org/10.1007/s00521-023-09033-7">10.1007/s00521-023-09033-7</a>.'
  short: F. Cornalba, C. Disselkamp, D. Scassola, C. Helf, Neural Computing and Applications
    36 (2024) 617–637.
corr_author: '1'
date_created: 2023-10-22T22:01:16Z
date_published: 2024-01-01T00:00:00Z
date_updated: 2025-04-23T07:39:14Z
day: '01'
ddc:
- '000'
department:
- _id: JuFi
doi: 10.1007/s00521-023-09033-7
ec_funded: 1
external_id:
  arxiv:
  - '2203.04579'
  pmid:
  - '38187995'
file:
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  checksum: 04573d8e74c6119b97c2ca0a984e19a1
  content_type: application/pdf
  creator: dernst
  date_created: 2024-07-16T08:08:54Z
  date_updated: 2024-07-16T08:08:54Z
  file_id: '17251'
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  relation: main_file
  success: 1
file_date_updated: 2024-07-16T08:08:54Z
has_accepted_license: '1'
intvolume: '        36'
issue: '2'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
page: 617-637
pmid: 1
project:
- _id: fc31cba2-9c52-11eb-aca3-ff467d239cd2
  grant_number: F6504
  name: Taming Complexity in Partial Differential Systems
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
publication: Neural Computing and Applications
publication_identifier:
  eissn:
  - 1433-3058
  issn:
  - 0941-0643
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Multi-objective reward generalization: Improving performance of Deep Reinforcement
  Learning for applications in single-asset trading'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
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  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 36
year: '2024'
...
---
OA_place: publisher
OA_type: hybrid
_id: '14463'
abstract:
- lang: eng
  text: Inversions are thought to play a key role in adaptation and speciation, suppressing
    recombination between diverging populations. Genes influencing adaptive traits
    cluster in inversions, and changes in inversion frequencies are associated with
    environmental differences. However, in many organisms, it is unclear if inversions
    are geographically and taxonomically widespread. The intertidal snail, Littorina
    saxatilis, is one such example. Strong associations between putative polymorphic
    inversions and phenotypic differences have been demonstrated between two ecotypes
    of L. saxatilis in Sweden and inferred elsewhere, but no direct evidence for inversion
    polymorphism currently exists across the species range. Using whole genome data
    from 107 snails, most inversion polymorphisms were found to be widespread across
    the species range. The frequencies of some inversion arrangements were significantly
    different among ecotypes, suggesting a parallel adaptive role. Many inversions
    were also polymorphic in the sister species, L. arcana, hinting at an ancient
    origin.
acknowledgement: We would like to thank members of the Littorina team for their advice
  and feedback during this project. In particular, we thank Alan Le Moan, who inspired
  us to look at heterozygosity differences to identify inversions, and Katherine Hearn
  for helping with the PCA scripts. We thank Edinburgh Genomics for library preparation
  and sequencing. Sample collections, sequencing and data preparation were supported
  by the European Research Council (ERC-2015-AdG-693030- BARRIERS) and the Natural
  Environment Research Council (NE/P001610/1). The analysis was supported by the Swedish
  Research Council (vetenskaprådet; 2018-03695_VR) and the Portuguese Foundation for
  Science and Technology (Fundación para a Ciência e Tecnologia) through a research
  project (PTDC/BIA-EVL/1614/2021) and CEEC contract (2020.00275.CEECIND).
article_number: e17160
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: James
  full_name: Reeve, James
  last_name: Reeve
- first_name: Roger K.
  full_name: Butlin, Roger K.
  last_name: Butlin
- first_name: Eva L.
  full_name: Koch, Eva L.
  last_name: Koch
- first_name: Sean
  full_name: Stankowski, Sean
  id: 43161670-5719-11EA-8025-FABC3DDC885E
  last_name: Stankowski
- first_name: Rui
  full_name: Faria, Rui
  last_name: Faria
citation:
  ama: Reeve J, Butlin RK, Koch EL, Stankowski S, Faria R. Chromosomal inversion polymorphisms
    are widespread across the species ranges of rough periwinkles (Littorina saxatilis
    and L. arcana). <i>Molecular Ecology</i>. 2024;33(24). doi:<a href="https://doi.org/10.1111/mec.17160">10.1111/mec.17160</a>
  apa: Reeve, J., Butlin, R. K., Koch, E. L., Stankowski, S., &#38; Faria, R. (2024).
    Chromosomal inversion polymorphisms are widespread across the species ranges of
    rough periwinkles (Littorina saxatilis and L. arcana). <i>Molecular Ecology</i>.
    Wiley. <a href="https://doi.org/10.1111/mec.17160">https://doi.org/10.1111/mec.17160</a>
  chicago: Reeve, James, Roger K. Butlin, Eva L. Koch, Sean Stankowski, and Rui Faria.
    “Chromosomal Inversion Polymorphisms Are Widespread across the Species Ranges
    of Rough Periwinkles (Littorina Saxatilis and L. Arcana).” <i>Molecular Ecology</i>.
    Wiley, 2024. <a href="https://doi.org/10.1111/mec.17160">https://doi.org/10.1111/mec.17160</a>.
  ieee: J. Reeve, R. K. Butlin, E. L. Koch, S. Stankowski, and R. Faria, “Chromosomal
    inversion polymorphisms are widespread across the species ranges of rough periwinkles
    (Littorina saxatilis and L. arcana),” <i>Molecular Ecology</i>, vol. 33, no. 24.
    Wiley, 2024.
  ista: Reeve J, Butlin RK, Koch EL, Stankowski S, Faria R. 2024. Chromosomal inversion
    polymorphisms are widespread across the species ranges of rough periwinkles (Littorina
    saxatilis and L. arcana). Molecular Ecology. 33(24), e17160.
  mla: Reeve, James, et al. “Chromosomal Inversion Polymorphisms Are Widespread across
    the Species Ranges of Rough Periwinkles (Littorina Saxatilis and L. Arcana).”
    <i>Molecular Ecology</i>, vol. 33, no. 24, e17160, Wiley, 2024, doi:<a href="https://doi.org/10.1111/mec.17160">10.1111/mec.17160</a>.
  short: J. Reeve, R.K. Butlin, E.L. Koch, S. Stankowski, R. Faria, Molecular Ecology
    33 (2024).
date_created: 2023-10-29T23:01:17Z
date_published: 2024-12-01T00:00:00Z
date_updated: 2025-01-09T07:53:18Z
day: '01'
ddc:
- '570'
department:
- _id: NiBa
doi: 10.1111/mec.17160
external_id:
  isi:
  - '001085119000001'
  pmid:
  - '37843465'
file:
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  checksum: 686576036663f489c2d079df3079d126
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  creator: dernst
  date_created: 2025-01-09T07:52:12Z
  date_updated: 2025-01-09T07:52:12Z
  file_id: '18785'
  file_name: 2024_MolecularEcology_Reeve.pdf
  file_size: 6228700
  relation: main_file
  success: 1
file_date_updated: 2025-01-09T07:52:12Z
has_accepted_license: '1'
intvolume: '        33'
isi: 1
issue: '24'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
pmid: 1
publication: Molecular Ecology
publication_identifier:
  eissn:
  - 1365-294X
  issn:
  - 0962-1083
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Chromosomal inversion polymorphisms are widespread across the species ranges
  of rough periwinkles (Littorina saxatilis and L. arcana)
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
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  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 33
year: '2024'
...
---
APC_amount: 3040,36 EUR
OA_place: publisher
OA_type: hybrid
_id: '14478'
abstract:
- lang: eng
  text: Entire chromosomes are typically only transmitted vertically from one generation
    to the next. The horizontal transfer of such chromosomes has long been considered
    improbable, yet gained recent support in several pathogenic fungi where it may
    affect the fitness or host specificity. To date, it is unknown how these transfers
    occur, how common they are and whether they can occur between different species.
    In this study, we show multiple independent instances of horizontal transfers
    of the same accessory chromosome between two distinct strains of the asexual entomopathogenic
    fungus<jats:italic>Metarhizium robertsii</jats:italic>during experimental co-infection
    of its insect host, the Argentine ant. Notably, only the one chromosome – but
    no other – was transferred from the donor to the recipient strain. The recipient
    strain, now harboring the accessory chromosome, exhibited a competitive advantage
    under certain host conditions. By phylogenetic analysis we further demonstrate
    that the same accessory chromosome was horizontally transferred in a natural environment
    between<jats:italic>M. robertsii</jats:italic>and another congeneric insect pathogen,<jats:italic>M.
    guizhouense</jats:italic>. Hence horizontal chromosome transfer is not limited
    to the observed frequent events within species during experimental infections
    but also occurs naturally across species. The transferred accessory chromosome
    contains genes that might be involved in its preferential horizontal transfer,
    encoding putative histones and histone-modifying enzymes, but also putative virulence
    factors that may support its establishment. Our study reveals that both intra-
    and interspecies horizontal transfer of entire chromosomes is more frequent than
    previously assumed, likely representing a not uncommon mechanism for gene exchange.</jats:p><jats:sec><jats:title>Significance
    Statement</jats:title><jats:p>The enormous success of bacterial pathogens has
    been attributed to their ability to exchange genetic material between one another.
    Similarly, in eukaryotes, horizontal transfer of genetic material allowed the
    spread of virulence factors across species. The horizontal transfer of whole chromosomes
    could be an important pathway for such exchange of genetic material, but little
    is known about the origin of transferable chromosomes and how frequently they
    are exchanged. Here, we show that the transfer of accessory chromosomes - chromosomes
    that are non-essential but may provide fitness benefits - is common during fungal
    co-infections and is even possible between distant pathogenic species, highlighting
    the importance of horizontal gene transfer via chromosome transfer also for the
    evolution and function of eukaryotic pathogens.
acknowledgement: We thank Bernhardt Steinwender, Jorgen Eilenberg, and Nicolai V.
  Meyling for the fungal strains. We further thank Chengshu Wang for providing the
  short sequencing reads for M. guizhouense ARESF977 he used for his published genome
  assembly, and Kristian Ullrich for help in the bioinformatics analysis for methylation
  pattern in Nanopore reads, and the VBC and the Max Planck Society for the use of
  their sequencing centers. We thank Barbara Milutinović and Hinrich Schulenburg for
  discussion, and Tal Dagan and Jens Rolff for comments on a previous version of the
  manuscript. Fig. 1A was created with BioRender.com. This study received funding
  by the European Research Council under the European Union’s Horizon 2020 Research
  and Innovation Programme (No. 771402; EPIDEMICSonCHIP) to S.C. and by the German
  Research Foundation (DFG grant HA9263/1-1) to M.H.
article_number: e2316284121
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Michael
  full_name: Habig, Michael
  last_name: Habig
- first_name: Anna V
  full_name: Grasse, Anna V
  id: 406F989C-F248-11E8-B48F-1D18A9856A87
  last_name: Grasse
- first_name: Judith
  full_name: Müller, Judith
  last_name: Müller
- first_name: Eva H.
  full_name: Stukenbrock, Eva H.
  last_name: Stukenbrock
- first_name: Hanna
  full_name: Leitner, Hanna
  id: 8fc5c6f6-5903-11ec-abad-c83f046253e7
  last_name: Leitner
- first_name: Sylvia
  full_name: Cremer, Sylvia
  id: 2F64EC8C-F248-11E8-B48F-1D18A9856A87
  last_name: Cremer
  orcid: 0000-0002-2193-3868
citation:
  ama: Habig M, Grasse AV, Müller J, Stukenbrock EH, Leitner H, Cremer S. Frequent
    horizontal chromosome transfer between asexual fungal insect pathogens. <i>Proceedings
    of the National Academy of Sciences of the United States of America</i>. 2024;121(11).
    doi:<a href="https://doi.org/10.1073/pnas.2316284121">10.1073/pnas.2316284121</a>
  apa: Habig, M., Grasse, A. V., Müller, J., Stukenbrock, E. H., Leitner, H., &#38;
    Cremer, S. (2024). Frequent horizontal chromosome transfer between asexual fungal
    insect pathogens. <i>Proceedings of the National Academy of Sciences of the United
    States of America</i>. National Academy of Sciences. <a href="https://doi.org/10.1073/pnas.2316284121">https://doi.org/10.1073/pnas.2316284121</a>
  chicago: Habig, Michael, Anna V Grasse, Judith Müller, Eva H. Stukenbrock, Hanna
    Leitner, and Sylvia Cremer. “Frequent Horizontal Chromosome Transfer between Asexual
    Fungal Insect Pathogens.” <i>Proceedings of the National Academy of Sciences of
    the United States of America</i>. National Academy of Sciences, 2024. <a href="https://doi.org/10.1073/pnas.2316284121">https://doi.org/10.1073/pnas.2316284121</a>.
  ieee: M. Habig, A. V. Grasse, J. Müller, E. H. Stukenbrock, H. Leitner, and S. Cremer,
    “Frequent horizontal chromosome transfer between asexual fungal insect pathogens,”
    <i>Proceedings of the National Academy of Sciences of the United States of America</i>,
    vol. 121, no. 11. National Academy of Sciences, 2024.
  ista: Habig M, Grasse AV, Müller J, Stukenbrock EH, Leitner H, Cremer S. 2024. Frequent
    horizontal chromosome transfer between asexual fungal insect pathogens. Proceedings
    of the National Academy of Sciences of the United States of America. 121(11),
    e2316284121.
  mla: Habig, Michael, et al. “Frequent Horizontal Chromosome Transfer between Asexual
    Fungal Insect Pathogens.” <i>Proceedings of the National Academy of Sciences of
    the United States of America</i>, vol. 121, no. 11, e2316284121, National Academy
    of Sciences, 2024, doi:<a href="https://doi.org/10.1073/pnas.2316284121">10.1073/pnas.2316284121</a>.
  short: M. Habig, A.V. Grasse, J. Müller, E.H. Stukenbrock, H. Leitner, S. Cremer,
    Proceedings of the National Academy of Sciences of the United States of America
    121 (2024).
corr_author: '1'
date_created: 2023-10-31T13:30:00Z
date_published: 2024-03-12T00:00:00Z
date_updated: 2025-08-05T13:30:51Z
day: '12'
ddc:
- '570'
department:
- _id: SyCr
doi: 10.1073/pnas.2316284121
ec_funded: 1
external_id:
  isi:
  - '001207630200005'
  pmid:
  - '38442176'
file:
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  checksum: f5e871db617b682edc71fcd08670dc81
  content_type: application/pdf
  creator: dernst
  date_created: 2024-03-19T09:02:57Z
  date_updated: 2024-03-19T09:02:57Z
  file_id: '15124'
  file_name: 2024_PNAS_Habig.pdf
  file_size: 5750361
  relation: main_file
  success: 1
file_date_updated: 2024-03-19T09:02:57Z
has_accepted_license: '1'
intvolume: '       121'
isi: 1
issue: '11'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-nd/4.0/
month: '03'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 2649B4DE-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '771402'
  name: Epidemics in ant societies on a chip
publication: Proceedings of the National Academy of Sciences of the United States
  of America
publication_identifier:
  eissn:
  - 1091-6490
  issn:
  - 0027-8424
publication_status: published
publisher: National Academy of Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: Frequent horizontal chromosome transfer between asexual fungal insect pathogens
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 121
year: '2024'
...
---
_id: '14479'
abstract:
- lang: eng
  text: 'In animals, parasitic infections impose significant fitness costs.1,2,3,4,5,6
    Infected animals can alter their feeding behavior to resist infection,7,8,9,10,11,12
    but parasites can manipulate animal foraging behavior to their own benefits.13,14,15,16
    How nutrition influences host-parasite interactions is not well understood, as
    studies have mainly focused on the host and less on the parasite.9,12,17,18,19,20,21,22,23
    We used the nutritional geometry framework24 to investigate the role of amino
    acids (AA) and carbohydrates (C) in a host-parasite system: the Argentine ant,
    Linepithema humile, and the entomopathogenic fungus, Metarhizium brunneum. First,
    using 18 diets varying in AA:C composition, we established that the fungus performed
    best on the high-amino-acid diet 1:4. Second, we found that the fungus reached
    this optimal diet when given various diet pairings, revealing its ability to cope
    with nutritional challenges. Third, we showed that the optimal fungal diet reduced
    the lifespan of healthy ants when compared with a high-carbohydrate diet but had
    no effect on infected ants. Fourth, we revealed that infected ant colonies, given
    a choice between the optimal fungal diet and a high-carbohydrate diet, chose the
    optimal fungal diet, whereas healthy colonies avoided it. Lastly, by disentangling
    fungal infection from host immune response, we demonstrated that infected ants
    foraged on the optimal fungal diet in response to immune activation and not as
    a result of parasite manipulation. Therefore, we revealed that infected ant colonies
    chose a diet that is costly for survival in the long term but beneficial in the
    short term—a form of collective self-medication.'
acknowledgement: We are sincerely grateful to the referees for their valuable comments
  and suggestions, which helped us to improve the paper. We are thankful to Jorgen
  Eilenberg and Nicolai V. Meyling for the fungal strain, to Simon Tragust, Abel Bernadou,
  and Brian Lazarro for insightful discussions, to Iago Sanmartín-Villar, Léa Briard,
  Céline Maitrel, and Nolwenn Rissen for their help with the experiments. Furthermore,
  we thank Anna V. Grasse for help with the immune gene expression analyses. We thank
  Sergio Ibarra for creating the graphical abstract. E.C. was supported by a Fyssen
  Foundation grant and the Alexander von Humboldt Foundation. A.D. was supported by
  the CNRS.
article_processing_charge: No
article_type: original
author:
- first_name: Eniko
  full_name: Csata, Eniko
  last_name: Csata
- first_name: Alfonso
  full_name: Perez-Escudero, Alfonso
  last_name: Perez-Escudero
- first_name: Emmanuel
  full_name: Laury, Emmanuel
  last_name: Laury
- first_name: Hanna
  full_name: Leitner, Hanna
  id: 8fc5c6f6-5903-11ec-abad-c83f046253e7
  last_name: Leitner
- first_name: Gerard
  full_name: Latil, Gerard
  last_name: Latil
- first_name: Juerge
  full_name: Heinze, Juerge
  last_name: Heinze
- first_name: Stephen
  full_name: Simpson, Stephen
  last_name: Simpson
- first_name: Sylvia
  full_name: Cremer, Sylvia
  id: 2F64EC8C-F248-11E8-B48F-1D18A9856A87
  last_name: Cremer
  orcid: 0000-0002-2193-3868
- first_name: Audrey
  full_name: Dussutour, Audrey
  last_name: Dussutour
citation:
  ama: Csata E, Perez-Escudero A, Laury E, et al. Fungal infection alters collective
    nutritional intake of ant colonies. <i>Current Biology</i>. 2024;34(4):902-909.e6.
    doi:<a href="https://doi.org/10.1016/j.cub.2024.01.017">10.1016/j.cub.2024.01.017</a>
  apa: Csata, E., Perez-Escudero, A., Laury, E., Leitner, H., Latil, G., Heinze, J.,
    … Dussutour, A. (2024). Fungal infection alters collective nutritional intake
    of ant colonies. <i>Current Biology</i>. Elsevier. <a href="https://doi.org/10.1016/j.cub.2024.01.017">https://doi.org/10.1016/j.cub.2024.01.017</a>
  chicago: Csata, Eniko, Alfonso Perez-Escudero, Emmanuel Laury, Hanna Leitner, Gerard
    Latil, Juerge Heinze, Stephen Simpson, Sylvia Cremer, and Audrey Dussutour. “Fungal
    Infection Alters Collective Nutritional Intake of Ant Colonies.” <i>Current Biology</i>.
    Elsevier, 2024. <a href="https://doi.org/10.1016/j.cub.2024.01.017">https://doi.org/10.1016/j.cub.2024.01.017</a>.
  ieee: E. Csata <i>et al.</i>, “Fungal infection alters collective nutritional intake
    of ant colonies,” <i>Current Biology</i>, vol. 34, no. 4. Elsevier, p. 902–909.e6,
    2024.
  ista: Csata E, Perez-Escudero A, Laury E, Leitner H, Latil G, Heinze J, Simpson
    S, Cremer S, Dussutour A. 2024. Fungal infection alters collective nutritional
    intake of ant colonies. Current Biology. 34(4), 902–909.e6.
  mla: Csata, Eniko, et al. “Fungal Infection Alters Collective Nutritional Intake
    of Ant Colonies.” <i>Current Biology</i>, vol. 34, no. 4, Elsevier, 2024, p. 902–909.e6,
    doi:<a href="https://doi.org/10.1016/j.cub.2024.01.017">10.1016/j.cub.2024.01.017</a>.
  short: E. Csata, A. Perez-Escudero, E. Laury, H. Leitner, G. Latil, J. Heinze, S.
    Simpson, S. Cremer, A. Dussutour, Current Biology 34 (2024) 902–909.e6.
date_created: 2023-10-31T13:30:20Z
date_published: 2024-02-26T00:00:00Z
date_updated: 2025-08-05T13:29:38Z
day: '26'
department:
- _id: SyCr
doi: 10.1016/j.cub.2024.01.017
external_id:
  isi:
  - '001195884300001'
  pmid:
  - '38307022'
intvolume: '        34'
isi: 1
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1101/2023.10.26.564092
month: '02'
oa: 1
oa_version: Preprint
page: 902-909.e6
pmid: 1
publication: Current Biology
publication_identifier:
  eissn:
  - 1879-0445
  issn:
  - 0960-9822
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Fungal infection alters collective nutritional intake of ant colonies
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 34
year: '2024'
...
---
_id: '14488'
abstract:
- lang: eng
  text: 'Portrait viewpoint and illumination editing is an important problem with
    several applications in VR/AR, movies, and photography. Comprehensive knowledge
    of geometry and illumination is critical for obtaining photorealistic results.
    Current methods are unable to explicitly model in 3D while handling both viewpoint
    and illumination editing from a single image. In this paper, we propose VoRF,
    a novel approach that can take even a single portrait image as input and relight
    human heads under novel illuminations that can be viewed from arbitrary viewpoints.
    VoRF represents a human head as a continuous volumetric field and learns a prior
    model of human heads using a coordinate-based MLP with individual latent spaces
    for identity and illumination. The prior model is learned in an auto-decoder manner
    over a diverse class of head shapes and appearances, allowing VoRF to generalize
    to novel test identities from a single input image. Additionally, VoRF has a reflectance
    MLP that uses the intermediate features of the prior model for rendering One-Light-at-A-Time
    (OLAT) images under novel views. We synthesize novel illuminations by combining
    these OLAT images with target environment maps. Qualitative and quantitative evaluations
    demonstrate the effectiveness of VoRF for relighting and novel view synthesis,
    even when applied to unseen subjects under uncontrolled illumination. This work
    is an extension of Rao et al. (VoRF: Volumetric Relightable Faces 2022). We provide
    extensive evaluation and ablative studies of our model and also provide an application,
    where any face can be relighted using textual input.'
acknowledgement: Open Access funding enabled and organized by Projekt DEAL.
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Pramod
  full_name: Rao, Pramod
  last_name: Rao
- first_name: B. R.
  full_name: Mallikarjun, B. R.
  last_name: Mallikarjun
- first_name: Gereon
  full_name: Fox, Gereon
  last_name: Fox
- first_name: Tim
  full_name: Weyrich, Tim
  last_name: Weyrich
- first_name: Bernd
  full_name: Bickel, Bernd
  id: 49876194-F248-11E8-B48F-1D18A9856A87
  last_name: Bickel
  orcid: 0000-0001-6511-9385
- first_name: Hanspeter
  full_name: Pfister, Hanspeter
  last_name: Pfister
- first_name: Wojciech
  full_name: Matusik, Wojciech
  last_name: Matusik
- first_name: Fangneng
  full_name: Zhan, Fangneng
  last_name: Zhan
- first_name: Ayush
  full_name: Tewari, Ayush
  last_name: Tewari
- first_name: Christian
  full_name: Theobalt, Christian
  last_name: Theobalt
- first_name: Mohamed
  full_name: Elgharib, Mohamed
  last_name: Elgharib
citation:
  ama: Rao P, Mallikarjun BR, Fox G, et al. A deeper analysis of volumetric relightiable
    faces. <i>International Journal of Computer Vision</i>. 2024;132:1148-1166. doi:<a
    href="https://doi.org/10.1007/s11263-023-01899-3">10.1007/s11263-023-01899-3</a>
  apa: Rao, P., Mallikarjun, B. R., Fox, G., Weyrich, T., Bickel, B., Pfister, H.,
    … Elgharib, M. (2024). A deeper analysis of volumetric relightiable faces. <i>International
    Journal of Computer Vision</i>. Springer Nature. <a href="https://doi.org/10.1007/s11263-023-01899-3">https://doi.org/10.1007/s11263-023-01899-3</a>
  chicago: Rao, Pramod, B. R. Mallikarjun, Gereon Fox, Tim Weyrich, Bernd Bickel,
    Hanspeter Pfister, Wojciech Matusik, et al. “A Deeper Analysis of Volumetric Relightiable
    Faces.” <i>International Journal of Computer Vision</i>. Springer Nature, 2024.
    <a href="https://doi.org/10.1007/s11263-023-01899-3">https://doi.org/10.1007/s11263-023-01899-3</a>.
  ieee: P. Rao <i>et al.</i>, “A deeper analysis of volumetric relightiable faces,”
    <i>International Journal of Computer Vision</i>, vol. 132. Springer Nature, pp.
    1148–1166, 2024.
  ista: Rao P, Mallikarjun BR, Fox G, Weyrich T, Bickel B, Pfister H, Matusik W, Zhan
    F, Tewari A, Theobalt C, Elgharib M. 2024. A deeper analysis of volumetric relightiable
    faces. International Journal of Computer Vision. 132, 1148–1166.
  mla: Rao, Pramod, et al. “A Deeper Analysis of Volumetric Relightiable Faces.” <i>International
    Journal of Computer Vision</i>, vol. 132, Springer Nature, 2024, pp. 1148–66,
    doi:<a href="https://doi.org/10.1007/s11263-023-01899-3">10.1007/s11263-023-01899-3</a>.
  short: P. Rao, B.R. Mallikarjun, G. Fox, T. Weyrich, B. Bickel, H. Pfister, W. Matusik,
    F. Zhan, A. Tewari, C. Theobalt, M. Elgharib, International Journal of Computer
    Vision 132 (2024) 1148–1166.
date_created: 2023-11-05T23:00:54Z
date_published: 2024-04-01T00:00:00Z
date_updated: 2025-08-05T13:28:58Z
day: '01'
ddc:
- '000'
department:
- _id: BeBi
doi: 10.1007/s11263-023-01899-3
external_id:
  isi:
  - '001091935600002'
  pmid:
  - '38549787'
file:
- access_level: open_access
  checksum: 5eef1d920f6fe700d7856098000d05f1
  content_type: application/pdf
  creator: dernst
  date_created: 2024-07-22T11:07:14Z
  date_updated: 2024-07-22T11:07:14Z
  file_id: '17304'
  file_name: 2024_IJCV_Rao.pdf
  file_size: 9942520
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  success: 1
file_date_updated: 2024-07-22T11:07:14Z
has_accepted_license: '1'
intvolume: '       132'
isi: 1
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: 1148-1166
pmid: 1
publication: International Journal of Computer Vision
publication_identifier:
  eissn:
  - 1573-1405
  issn:
  - 0920-5691
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: A deeper analysis of volumetric relightiable faces
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 132
year: '2024'
...
---
OA_place: publisher
OA_type: hybrid
_id: '14542'
abstract:
- lang: eng
  text: "It is a remarkable property of BCS theory that the ratio of the energy gap
    at zero temperature Ξ\r\n and the critical temperature Tc is (approximately) given
    by a universal constant, independent of the microscopic details of the fermionic
    interaction. This universality has rigorously been proven quite recently in three
    spatial dimensions and three different limiting regimes: weak coupling, low density
    and high density. The goal of this short note is to extend the universal behavior
    to lower dimensions d=1,2 and give an exemplary proof in the weak coupling limit."
acknowledgement: We thank Robert Seiringer for comments on the paper. J. H. gratefully
  acknowledges  partial  financial  support  by  the  ERC  Advanced  Grant  “RMTBeyond”No.
  101020331.This research was funded in part by the Austrian Science Fund (FWF) grantnumber
  I6427.
article_number: '2360005 '
article_processing_charge: Yes (in subscription journal)
article_type: original
arxiv: 1
author:
- first_name: Sven Joscha
  full_name: Henheik, Sven Joscha
  id: 31d731d7-d235-11ea-ad11-b50331c8d7fb
  last_name: Henheik
  orcid: 0000-0003-1106-327X
- first_name: Asbjørn Bækgaard
  full_name: Lauritsen, Asbjørn Bækgaard
  id: e1a2682f-dc8d-11ea-abe3-81da9ac728f1
  last_name: Lauritsen
  orcid: 0000-0003-4476-2288
- first_name: Barbara
  full_name: Roos, Barbara
  id: 5DA90512-D80F-11E9-8994-2E2EE6697425
  last_name: Roos
  orcid: 0000-0002-9071-5880
citation:
  ama: Henheik SJ, Lauritsen AB, Roos B. Universality in low-dimensional BCS theory.
    <i>Reviews in Mathematical Physics</i>. 2024;36(9). doi:<a href="https://doi.org/10.1142/s0129055x2360005x">10.1142/s0129055x2360005x</a>
  apa: Henheik, S. J., Lauritsen, A. B., &#38; Roos, B. (2024). Universality in low-dimensional
    BCS theory. <i>Reviews in Mathematical Physics</i>. World Scientific Publishing.
    <a href="https://doi.org/10.1142/s0129055x2360005x">https://doi.org/10.1142/s0129055x2360005x</a>
  chicago: Henheik, Sven Joscha, Asbjørn Bækgaard Lauritsen, and Barbara Roos. “Universality
    in Low-Dimensional BCS Theory.” <i>Reviews in Mathematical Physics</i>. World
    Scientific Publishing, 2024. <a href="https://doi.org/10.1142/s0129055x2360005x">https://doi.org/10.1142/s0129055x2360005x</a>.
  ieee: S. J. Henheik, A. B. Lauritsen, and B. Roos, “Universality in low-dimensional
    BCS theory,” <i>Reviews in Mathematical Physics</i>, vol. 36, no. 9. World Scientific
    Publishing, 2024.
  ista: Henheik SJ, Lauritsen AB, Roos B. 2024. Universality in low-dimensional BCS
    theory. Reviews in Mathematical Physics. 36(9), 2360005.
  mla: Henheik, Sven Joscha, et al. “Universality in Low-Dimensional BCS Theory.”
    <i>Reviews in Mathematical Physics</i>, vol. 36, no. 9, 2360005, World Scientific
    Publishing, 2024, doi:<a href="https://doi.org/10.1142/s0129055x2360005x">10.1142/s0129055x2360005x</a>.
  short: S.J. Henheik, A.B. Lauritsen, B. Roos, Reviews in Mathematical Physics 36
    (2024).
corr_author: '1'
date_created: 2023-11-15T23:48:14Z
date_published: 2024-10-01T00:00:00Z
date_updated: 2026-04-07T13:01:40Z
day: '01'
ddc:
- '510'
department:
- _id: GradSch
- _id: LaEr
- _id: RoSe
doi: 10.1142/s0129055x2360005x
ec_funded: 1
external_id:
  arxiv:
  - '2301.05621'
  isi:
  - '001099640300002'
file:
- access_level: open_access
  checksum: 2b053a4223b4db14b90520999ec56054
  content_type: application/pdf
  creator: dernst
  date_created: 2025-01-09T07:56:28Z
  date_updated: 2025-01-09T07:56:28Z
  file_id: '18786'
  file_name: 2024_ReviewsmathPhysics_Henheik.pdf
  file_size: 503910
  relation: main_file
  success: 1
file_date_updated: 2025-01-09T07:56:28Z
has_accepted_license: '1'
intvolume: '        36'
isi: 1
issue: '9'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
project:
- _id: 62796744-2b32-11ec-9570-940b20777f1d
  call_identifier: H2020
  grant_number: '101020331'
  name: Random matrices beyond Wigner-Dyson-Mehta
- _id: bda63fe5-d553-11ed-ba76-a16e3d2f256b
  grant_number: I06427
  name: Mathematical Challenges in BCS Theory of Superconductivity
publication: Reviews in Mathematical Physics
publication_identifier:
  eissn:
  - 1793-6659
  issn:
  - 0129-055X
publication_status: published
publisher: World Scientific Publishing
quality_controlled: '1'
related_material:
  record:
  - id: '19540'
    relation: dissertation_contains
    status: public
  - id: '18135'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Universality in low-dimensional BCS theory
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 36
year: '2024'
...
---
_id: '14543'
abstract:
- lang: eng
  text: The acyl-CoA-binding domain-containing protein 6 (ACBD6) is ubiquitously expressed,
    plays a role in the acylation of lipids and proteins, and regulates the N-myristoylation
    of proteins via N-myristoyltransferase enzymes (NMTs). However, its precise function
    in cells is still unclear, as is the consequence of ACBD6 defects on human pathophysiology.
    Utilizing exome sequencing and extensive international data sharing efforts, we
    identified 45 affected individuals from 28 unrelated families (consanguinity 93%)
    with bi-allelic pathogenic, predominantly loss-of-function (18/20) variants in
    ACBD6. We generated zebrafish and Xenopus tropicalis acbd6 knockouts by CRISPR/Cas9
    and characterized the role of ACBD6 on protein N-myristoylation with YnMyr chemical
    proteomics in the model organisms and human cells, with the latter also being
    subjected further to ACBD6 peroxisomal localization studies. The affected individuals
    (23 males and 22 females), with ages ranging from 1 to 50 years old, typically
    present with a complex and progressive disease involving moderate-to-severe global
    developmental delay/intellectual disability (100%) with significant expressive
    language impairment (98%), movement disorders (97%), facial dysmorphism (95%),
    and mild cerebellar ataxia (85%) associated with gait impairment (94%), limb spasticity/hypertonia
    (76%), oculomotor (71%) and behavioural abnormalities (65%), overweight (59%),
    microcephaly (39%) and epilepsy (33%). The most conspicuous and common movement
    disorder was dystonia (94%), frequently leading to early-onset progressive postural
    deformities (97%), limb dystonia (55%), and cervical dystonia (31%). A jerky tremor
    in the upper limbs (63%), a mild head tremor (59%), parkinsonism/hypokinesia developing
    with advancing age (32%), and simple motor and vocal tics were among other frequent
    movement disorders. Midline brain malformations including corpus callosum abnormalities
    (70%), hypoplasia/agenesis of the anterior commissure (66%), short midbrain and
    small inferior cerebellar vermis (38% each), as well as hypertrophy of the clava
    (24%) were common neuroimaging findings. acbd6-deficient zebrafish and Xenopus
    models effectively recapitulated many clinical phenotypes reported in patients
    including movement disorders, progressive neuromotor impairment, seizures, microcephaly,
    craniofacial dysmorphism, and midbrain defects accompanied by developmental delay
    with increased mortality over time. Unlike ACBD5, ACBD6 did not show a peroxisomal
    localisation and ACBD6-deficiency was not associated with altered peroxisomal
    parameters in patient fibroblasts. Significant differences in YnMyr-labelling
    were observed for 68 co- and 18 post-translationally N-myristoylated proteins
    in patient-derived fibroblasts. N-Myristoylation was similarly affected in acbd6-deficient
    zebrafish and Xenopus tropicalis models, including Fus, Marcks, and Chchd-related
    proteins implicated in neurological diseases. The present study provides evidence
    that bi-allelic pathogenic variants in ACBD6 lead to a distinct neurodevelopmental
    syndrome accompanied by complex and progressive cognitive and movement disorders.
article_processing_charge: No
article_type: original
author:
- first_name: Rauan
  full_name: Kaiyrzhanov, Rauan
  last_name: Kaiyrzhanov
- first_name: Aboulfazl
  full_name: Rad, Aboulfazl
  last_name: Rad
- first_name: Sheng-Jia
  full_name: Lin, Sheng-Jia
  last_name: Lin
- first_name: Aida
  full_name: Bertoli-Avella, Aida
  last_name: Bertoli-Avella
- first_name: Wouter W
  full_name: Kallemeijn, Wouter W
  last_name: Kallemeijn
- first_name: Annie
  full_name: Godwin, Annie
  last_name: Godwin
- first_name: Maha S
  full_name: Zaki, Maha S
  last_name: Zaki
- first_name: Kevin
  full_name: Huang, Kevin
  id: 3b3d2888-1ff6-11ee-9fa6-8f209ca91fe3
  last_name: Huang
  orcid: 0000-0002-2512-7812
- first_name: Tracy
  full_name: Lau, Tracy
  last_name: Lau
- first_name: Cassidy
  full_name: Petree, Cassidy
  last_name: Petree
- first_name: Stephanie
  full_name: Efthymiou, Stephanie
  last_name: Efthymiou
- first_name: Ehsan
  full_name: Ghayoor Karimiani, Ehsan
  last_name: Ghayoor Karimiani
- first_name: Maja
  full_name: Hempel, Maja
  last_name: Hempel
- first_name: Elizabeth A
  full_name: Normand, Elizabeth A
  last_name: Normand
- first_name: Sabine
  full_name: Rudnik-Schöneborn, Sabine
  last_name: Rudnik-Schöneborn
- first_name: Ulrich A
  full_name: Schatz, Ulrich A
  last_name: Schatz
- first_name: Marc P
  full_name: Baggelaar, Marc P
  last_name: Baggelaar
- first_name: Muhammad
  full_name: Ilyas, Muhammad
  last_name: Ilyas
- first_name: Tipu
  full_name: Sultan, Tipu
  last_name: Sultan
- first_name: Javeria Raza
  full_name: Alvi, Javeria Raza
  last_name: Alvi
- first_name: Manizha
  full_name: Ganieva, Manizha
  last_name: Ganieva
- first_name: Ben
  full_name: Fowler, Ben
  last_name: Fowler
- first_name: Ruxandra
  full_name: Aanicai, Ruxandra
  last_name: Aanicai
- first_name: Gulsen
  full_name: Akay Tayfun, Gulsen
  last_name: Akay Tayfun
- first_name: Abdulaziz
  full_name: Al Saman, Abdulaziz
  last_name: Al Saman
- first_name: Abdulrahman
  full_name: Alswaid, Abdulrahman
  last_name: Alswaid
- first_name: Nafise
  full_name: Amiri, Nafise
  last_name: Amiri
- first_name: Nilufar
  full_name: Asilova, Nilufar
  last_name: Asilova
- first_name: Vorasuk
  full_name: Shotelersuk, Vorasuk
  last_name: Shotelersuk
- first_name: Patra
  full_name: Yeetong, Patra
  last_name: Yeetong
- first_name: Matloob
  full_name: Azam, Matloob
  last_name: Azam
- first_name: Meisam
  full_name: Babaei, Meisam
  last_name: Babaei
- first_name: Gholamreza
  full_name: Bahrami Monajemi, Gholamreza
  last_name: Bahrami Monajemi
- first_name: Pouria
  full_name: Mohammadi, Pouria
  last_name: Mohammadi
- first_name: Saeed
  full_name: Samie, Saeed
  last_name: Samie
- first_name: Selina Husna
  full_name: Banu, Selina Husna
  last_name: Banu
- first_name: Jorge Pinto
  full_name: Basto, Jorge Pinto
  last_name: Basto
- first_name: Fanny
  full_name: Kortüm, Fanny
  last_name: Kortüm
- first_name: Mislen
  full_name: Bauer, Mislen
  last_name: Bauer
- first_name: Peter
  full_name: Bauer, Peter
  last_name: Bauer
- first_name: Christian
  full_name: Beetz, Christian
  last_name: Beetz
- first_name: Masoud
  full_name: Garshasbi, Masoud
  last_name: Garshasbi
- first_name: Awatif
  full_name: Hameed Issa, Awatif
  last_name: Hameed Issa
- first_name: Wafaa
  full_name: Eyaid, Wafaa
  last_name: Eyaid
- first_name: Hind
  full_name: Ahmed, Hind
  last_name: Ahmed
- first_name: Narges
  full_name: Hashemi, Narges
  last_name: Hashemi
- first_name: Kazem
  full_name: Hassanpour, Kazem
  last_name: Hassanpour
- first_name: Isabella
  full_name: Herman, Isabella
  last_name: Herman
- first_name: Sherozjon
  full_name: Ibrohimov, Sherozjon
  last_name: Ibrohimov
- first_name: Ban A
  full_name: Abdul-Majeed, Ban A
  last_name: Abdul-Majeed
- first_name: Maria
  full_name: Imdad, Maria
  last_name: Imdad
- first_name: Maksudjon
  full_name: Isrofilov, Maksudjon
  last_name: Isrofilov
- first_name: Qassem
  full_name: Kaiyal, Qassem
  last_name: Kaiyal
- first_name: Suliman
  full_name: Khan, Suliman
  last_name: Khan
- first_name: Brian
  full_name: Kirmse, Brian
  last_name: Kirmse
- first_name: Janet
  full_name: Koster, Janet
  last_name: Koster
- first_name: Charles Marques
  full_name: Lourenço, Charles Marques
  last_name: Lourenço
- first_name: Tadahiro
  full_name: Mitani, Tadahiro
  last_name: Mitani
- first_name: Oana
  full_name: Moldovan, Oana
  last_name: Moldovan
- first_name: David
  full_name: Murphy, David
  last_name: Murphy
- first_name: Maryam
  full_name: Najafi, Maryam
  last_name: Najafi
- first_name: Davut
  full_name: Pehlivan, Davut
  last_name: Pehlivan
- first_name: Maria Eugenia
  full_name: Rocha, Maria Eugenia
  last_name: Rocha
- first_name: Vincenzo
  full_name: Salpietro, Vincenzo
  last_name: Salpietro
- first_name: Miriam
  full_name: Schmidts, Miriam
  last_name: Schmidts
- first_name: Adel
  full_name: Shalata, Adel
  last_name: Shalata
- first_name: Mohammad
  full_name: Mahroum, Mohammad
  last_name: Mahroum
- first_name: Jawabreh Kassem
  full_name: Talbeya, Jawabreh Kassem
  last_name: Talbeya
- first_name: Robert W
  full_name: Taylor, Robert W
  last_name: Taylor
- first_name: Dayana
  full_name: Vazquez, Dayana
  last_name: Vazquez
- first_name: Annalisa
  full_name: Vetro, Annalisa
  last_name: Vetro
- first_name: Hans R
  full_name: Waterham, Hans R
  last_name: Waterham
- first_name: Mashaya
  full_name: Zaman, Mashaya
  last_name: Zaman
- first_name: Tina A
  full_name: Schrader, Tina A
  last_name: Schrader
- first_name: Wendy K
  full_name: Chung, Wendy K
  last_name: Chung
- first_name: Renzo
  full_name: Guerrini, Renzo
  last_name: Guerrini
- first_name: James R
  full_name: Lupski, James R
  last_name: Lupski
- first_name: Joseph
  full_name: Gleeson, Joseph
  last_name: Gleeson
- first_name: Mohnish
  full_name: Suri, Mohnish
  last_name: Suri
- first_name: Yalda
  full_name: Jamshidi, Yalda
  last_name: Jamshidi
- first_name: Kailash P
  full_name: Bhatia, Kailash P
  last_name: Bhatia
- first_name: Barbara
  full_name: Vona, Barbara
  last_name: Vona
- first_name: Michael
  full_name: Schrader, Michael
  last_name: Schrader
- first_name: Mariasavina
  full_name: Severino, Mariasavina
  last_name: Severino
- first_name: Matthew
  full_name: Guille, Matthew
  last_name: Guille
- first_name: Edward W
  full_name: Tate, Edward W
  last_name: Tate
- first_name: Gaurav K
  full_name: Varshney, Gaurav K
  last_name: Varshney
- first_name: Henry
  full_name: Houlden, Henry
  last_name: Houlden
- first_name: Reza
  full_name: Maroofian, Reza
  last_name: Maroofian
citation:
  ama: Kaiyrzhanov R, Rad A, Lin S-J, et al. Bi-allelic ACBD6 variants lead to a neurodevelopmental
    syndrome with progressive and complex movement disorders. <i>Brain</i>. 2024;147(4):1436-1456.
    doi:<a href="https://doi.org/10.1093/brain/awad380">10.1093/brain/awad380</a>
  apa: Kaiyrzhanov, R., Rad, A., Lin, S.-J., Bertoli-Avella, A., Kallemeijn, W. W.,
    Godwin, A., … Maroofian, R. (2024). Bi-allelic ACBD6 variants lead to a neurodevelopmental
    syndrome with progressive and complex movement disorders. <i>Brain</i>. Oxford
    University Press. <a href="https://doi.org/10.1093/brain/awad380">https://doi.org/10.1093/brain/awad380</a>
  chicago: Kaiyrzhanov, Rauan, Aboulfazl Rad, Sheng-Jia Lin, Aida Bertoli-Avella,
    Wouter W Kallemeijn, Annie Godwin, Maha S Zaki, et al. “Bi-Allelic ACBD6 Variants
    Lead to a Neurodevelopmental Syndrome with Progressive and Complex Movement Disorders.”
    <i>Brain</i>. Oxford University Press, 2024. <a href="https://doi.org/10.1093/brain/awad380">https://doi.org/10.1093/brain/awad380</a>.
  ieee: R. Kaiyrzhanov <i>et al.</i>, “Bi-allelic ACBD6 variants lead to a neurodevelopmental
    syndrome with progressive and complex movement disorders,” <i>Brain</i>, vol.
    147, no. 4. Oxford University Press, pp. 1436–1456, 2024.
  ista: Kaiyrzhanov R, Rad A, Lin S-J, Bertoli-Avella A, Kallemeijn WW, Godwin A,
    Zaki MS, Huang K, Lau T, Petree C, Efthymiou S, Ghayoor Karimiani E, Hempel M,
    Normand EA, Rudnik-Schöneborn S, Schatz UA, Baggelaar MP, Ilyas M, Sultan T, Alvi
    JR, Ganieva M, Fowler B, Aanicai R, Akay Tayfun G, Al Saman A, Alswaid A, Amiri
    N, Asilova N, Shotelersuk V, Yeetong P, Azam M, Babaei M, Bahrami Monajemi G,
    Mohammadi P, Samie S, Banu SH, Basto JP, Kortüm F, Bauer M, Bauer P, Beetz C,
    Garshasbi M, Hameed Issa A, Eyaid W, Ahmed H, Hashemi N, Hassanpour K, Herman
    I, Ibrohimov S, Abdul-Majeed BA, Imdad M, Isrofilov M, Kaiyal Q, Khan S, Kirmse
    B, Koster J, Lourenço CM, Mitani T, Moldovan O, Murphy D, Najafi M, Pehlivan D,
    Rocha ME, Salpietro V, Schmidts M, Shalata A, Mahroum M, Talbeya JK, Taylor RW,
    Vazquez D, Vetro A, Waterham HR, Zaman M, Schrader TA, Chung WK, Guerrini R, Lupski
    JR, Gleeson J, Suri M, Jamshidi Y, Bhatia KP, Vona B, Schrader M, Severino M,
    Guille M, Tate EW, Varshney GK, Houlden H, Maroofian R. 2024. Bi-allelic ACBD6
    variants lead to a neurodevelopmental syndrome with progressive and complex movement
    disorders. Brain. 147(4), 1436–1456.
  mla: Kaiyrzhanov, Rauan, et al. “Bi-Allelic ACBD6 Variants Lead to a Neurodevelopmental
    Syndrome with Progressive and Complex Movement Disorders.” <i>Brain</i>, vol.
    147, no. 4, Oxford University Press, 2024, pp. 1436–56, doi:<a href="https://doi.org/10.1093/brain/awad380">10.1093/brain/awad380</a>.
  short: R. Kaiyrzhanov, A. Rad, S.-J. Lin, A. Bertoli-Avella, W.W. Kallemeijn, A.
    Godwin, M.S. Zaki, K. Huang, T. Lau, C. Petree, S. Efthymiou, E. Ghayoor Karimiani,
    M. Hempel, E.A. Normand, S. Rudnik-Schöneborn, U.A. Schatz, M.P. Baggelaar, M.
    Ilyas, T. Sultan, J.R. Alvi, M. Ganieva, B. Fowler, R. Aanicai, G. Akay Tayfun,
    A. Al Saman, A. Alswaid, N. Amiri, N. Asilova, V. Shotelersuk, P. Yeetong, M.
    Azam, M. Babaei, G. Bahrami Monajemi, P. Mohammadi, S. Samie, S.H. Banu, J.P.
    Basto, F. Kortüm, M. Bauer, P. Bauer, C. Beetz, M. Garshasbi, A. Hameed Issa,
    W. Eyaid, H. Ahmed, N. Hashemi, K. Hassanpour, I. Herman, S. Ibrohimov, B.A. Abdul-Majeed,
    M. Imdad, M. Isrofilov, Q. Kaiyal, S. Khan, B. Kirmse, J. Koster, C.M. Lourenço,
    T. Mitani, O. Moldovan, D. Murphy, M. Najafi, D. Pehlivan, M.E. Rocha, V. Salpietro,
    M. Schmidts, A. Shalata, M. Mahroum, J.K. Talbeya, R.W. Taylor, D. Vazquez, A.
    Vetro, H.R. Waterham, M. Zaman, T.A. Schrader, W.K. Chung, R. Guerrini, J.R. Lupski,
    J. Gleeson, M. Suri, Y. Jamshidi, K.P. Bhatia, B. Vona, M. Schrader, M. Severino,
    M. Guille, E.W. Tate, G.K. Varshney, H. Houlden, R. Maroofian, Brain 147 (2024)
    1436–1456.
date_created: 2023-11-16T12:36:51Z
date_published: 2024-04-01T00:00:00Z
date_updated: 2024-07-16T08:23:24Z
day: '01'
ddc:
- '570'
department:
- _id: GradSch
doi: 10.1093/brain/awad380
extern: '1'
external_id:
  pmid:
  - '37951597'
file:
- access_level: open_access
  checksum: 0ee7a8ab9300225d60968f7a3e3cfa0d
  content_type: application/pdf
  creator: dernst
  date_created: 2024-07-16T08:22:13Z
  date_updated: 2024-07-16T08:22:13Z
  file_id: '17254'
  file_name: 2024_Brain_Kaiyrzhanov.pdf
  file_size: 2641456
  relation: main_file
  success: 1
file_date_updated: 2024-07-16T08:22:13Z
has_accepted_license: '1'
intvolume: '       147'
issue: '4'
keyword:
- Neurology (clinical)
language:
- iso: eng
month: '04'
oa: 1
oa_version: Submitted Version
page: 1436-1456
pmid: 1
publication: Brain
publication_identifier:
  eissn:
  - 1460-2156
  issn:
  - 0006-8950
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Bi-allelic ACBD6 variants lead to a neurodevelopmental syndrome with progressive
  and complex movement disorders
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 147
year: '2024'
...
---
_id: '14652'
abstract:
- lang: eng
  text: In order to demonstrate the stability of newly proposed iridium-based Ir2Cr(In,Sn)
    and IrRhCr(In,Sn) heusler alloys, we present ab-initio analysis of these alloys
    by examining various properties to prove their stability. The stability of these
    alloys can be inferred from different cohesive and formation energies as well
    as positive phonon frequencies. Their electronic structure results indicate that
    they are semi-metals in nature. The magnetic moments are computed using the Slater-Pauling
    formula and exhibit a high value, with the Cr atom contributing the most in all
    alloys. Mulliken’s charge analysis results show that our alloys contain a range
    of linkages, mainly ionic and covalent ones. The ductility and mechanical stability
    of these alloys are confirmed by elastic constants viz. Poisson’s ratio, Pugh’s
    ratio, and many different types of elastic moduli.
article_number: '415539'
article_processing_charge: No
article_type: original
author:
- first_name: Shyam Lal
  full_name: Gupta, Shyam Lal
  last_name: Gupta
- first_name: Saurabh
  full_name: Singh, Saurabh
  id: 12d625da-9cb3-11ed-9667-af09d37d3f0a
  last_name: Singh
  orcid: 0000-0003-2209-5269
- first_name: Sumit
  full_name: Kumar, Sumit
  last_name: Kumar
- first_name: Unknown
  full_name: Anupam, Unknown
  last_name: Anupam
- first_name: Samjeet Singh
  full_name: Thakur, Samjeet Singh
  last_name: Thakur
- first_name: Ashish
  full_name: Kumar, Ashish
  last_name: Kumar
- first_name: Sanjay
  full_name: Panwar, Sanjay
  last_name: Panwar
- first_name: D.
  full_name: Diwaker, D.
  last_name: Diwaker
citation:
  ama: 'Gupta SL, Singh S, Kumar S, et al. Ab-initio stability of Iridium based newly
    proposed full and quaternary heusler alloys. <i>Physica B: Condensed Matter</i>.
    2024;674(2). doi:<a href="https://doi.org/10.1016/j.physb.2023.415539">10.1016/j.physb.2023.415539</a>'
  apa: 'Gupta, S. L., Singh, S., Kumar, S., Anupam, U., Thakur, S. S., Kumar, A.,
    … Diwaker, D. (2024). Ab-initio stability of Iridium based newly proposed full
    and quaternary heusler alloys. <i>Physica B: Condensed Matter</i>. Elsevier. <a
    href="https://doi.org/10.1016/j.physb.2023.415539">https://doi.org/10.1016/j.physb.2023.415539</a>'
  chicago: 'Gupta, Shyam Lal, Saurabh Singh, Sumit Kumar, Unknown Anupam, Samjeet
    Singh Thakur, Ashish Kumar, Sanjay Panwar, and D. Diwaker. “Ab-Initio Stability
    of Iridium Based Newly Proposed Full and Quaternary Heusler Alloys.” <i>Physica
    B: Condensed Matter</i>. Elsevier, 2024. <a href="https://doi.org/10.1016/j.physb.2023.415539">https://doi.org/10.1016/j.physb.2023.415539</a>.'
  ieee: 'S. L. Gupta <i>et al.</i>, “Ab-initio stability of Iridium based newly proposed
    full and quaternary heusler alloys,” <i>Physica B: Condensed Matter</i>, vol.
    674, no. 2. Elsevier, 2024.'
  ista: 'Gupta SL, Singh S, Kumar S, Anupam U, Thakur SS, Kumar A, Panwar S, Diwaker
    D. 2024. Ab-initio stability of Iridium based newly proposed full and quaternary
    heusler alloys. Physica B: Condensed Matter. 674(2), 415539.'
  mla: 'Gupta, Shyam Lal, et al. “Ab-Initio Stability of Iridium Based Newly Proposed
    Full and Quaternary Heusler Alloys.” <i>Physica B: Condensed Matter</i>, vol.
    674, no. 2, 415539, Elsevier, 2024, doi:<a href="https://doi.org/10.1016/j.physb.2023.415539">10.1016/j.physb.2023.415539</a>.'
  short: 'S.L. Gupta, S. Singh, S. Kumar, U. Anupam, S.S. Thakur, A. Kumar, S. Panwar,
    D. Diwaker, Physica B: Condensed Matter 674 (2024).'
date_created: 2023-12-10T23:00:56Z
date_published: 2024-02-01T00:00:00Z
date_updated: 2025-09-04T11:29:46Z
day: '01'
department:
- _id: MaIb
doi: 10.1016/j.physb.2023.415539
external_id:
  isi:
  - '001127429000001'
intvolume: '       674'
isi: 1
issue: '2'
language:
- iso: eng
month: '02'
oa_version: None
publication: 'Physica B: Condensed Matter'
publication_identifier:
  issn:
  - 0921-4526
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Ab-initio stability of Iridium based newly proposed full and quaternary heusler
  alloys
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 674
year: '2024'
...
---
_id: '14653'
abstract:
- lang: eng
  text: 'Mass spectrometry imaging (MSI) is a powerful analytical technique for the
    two-dimensional (2D) localization of chemicals on surfaces. Conventional MSI experiments
    require to predefine the surface of interest based on photographic or microscopic
    images. Typically, these boundaries can no longer be changed or adjusted once
    the experiment has been started. In terms of a more interactive approach we recently
    developed a pen-like ionization interface which is directly connected to the mass
    spectrometer. The device allows the user to ionize chemicals by desorption electrospray
    ionization (DESI) and to freely move the interface over a surface of interest.
    A mini camera, which is mounted on the tip of the pen, magnifies the desorption
    area and enables a simple positioning of the pen. The combination of optical data
    from the camera module and chemical data obtained by mass analysis facilitates
    a novel type of imaging experiment: interactive mass spectrometry imaging (IMSI).
    For this application, we present a novel approach for a robust, optical flow-based
    motion detection. While the live video stream from the camera is used to track
    the pen''s motion across the surface a post-acquisition algorithm correlates the
    coordinates of the pen trajectory with respective mass spectra obtained from a
    simultaneous mass spectrometric data acquisition. This algorithm is no longer
    dependent on a single, manually applied optical marker on the sample surface,
    which has to be visible on all video frames throughout the analysis. The advanced
    DESI-IMSI method was successfully tested on inkjet-printed letters as well as
    mouse brain tissue samples. Validation of the results was done by comparing DESI-IMSI
    with standard DESI-MSI data.'
acknowledgement: We would like to thank Marco Sealey Cardona, PhD for help with the
  mouse brain samples and acknowledge the financial support by 1669 Förderkreis of
  the University of Innsbruck, Austria Wirtschaftsservice (AWS), D. Swarovski KG and
  Tyrolean Science Fund (TWF).
article_number: '117168'
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Florian
  full_name: Kluibenschedl, Florian
  id: 7499e70e-eb2c-11ec-b98b-f925648bc9d9
  last_name: Kluibenschedl
- first_name: Anna
  full_name: Ploner, Anna
  last_name: Ploner
- first_name: Christina
  full_name: Meisenbichler, Christina
  last_name: Meisenbichler
- first_name: Robert
  full_name: Konrat, Robert
  last_name: Konrat
- first_name: Thomas
  full_name: Müller, Thomas
  last_name: Müller
citation:
  ama: Kluibenschedl F, Ploner A, Meisenbichler C, Konrat R, Müller T. Advanced motion
    tracking for interactive mass spectrometry imaging (IMSI). <i>International Journal
    of Mass Spectrometry</i>. 2024;495. doi:<a href="https://doi.org/10.1016/j.ijms.2023.117168">10.1016/j.ijms.2023.117168</a>
  apa: Kluibenschedl, F., Ploner, A., Meisenbichler, C., Konrat, R., &#38; Müller,
    T. (2024). Advanced motion tracking for interactive mass spectrometry imaging
    (IMSI). <i>International Journal of Mass Spectrometry</i>. Elsevier. <a href="https://doi.org/10.1016/j.ijms.2023.117168">https://doi.org/10.1016/j.ijms.2023.117168</a>
  chicago: Kluibenschedl, Florian, Anna Ploner, Christina Meisenbichler, Robert Konrat,
    and Thomas Müller. “Advanced Motion Tracking for Interactive Mass Spectrometry
    Imaging (IMSI).” <i>International Journal of Mass Spectrometry</i>. Elsevier,
    2024. <a href="https://doi.org/10.1016/j.ijms.2023.117168">https://doi.org/10.1016/j.ijms.2023.117168</a>.
  ieee: F. Kluibenschedl, A. Ploner, C. Meisenbichler, R. Konrat, and T. Müller, “Advanced
    motion tracking for interactive mass spectrometry imaging (IMSI),” <i>International
    Journal of Mass Spectrometry</i>, vol. 495. Elsevier, 2024.
  ista: Kluibenschedl F, Ploner A, Meisenbichler C, Konrat R, Müller T. 2024. Advanced
    motion tracking for interactive mass spectrometry imaging (IMSI). International
    Journal of Mass Spectrometry. 495, 117168.
  mla: Kluibenschedl, Florian, et al. “Advanced Motion Tracking for Interactive Mass
    Spectrometry Imaging (IMSI).” <i>International Journal of Mass Spectrometry</i>,
    vol. 495, 117168, Elsevier, 2024, doi:<a href="https://doi.org/10.1016/j.ijms.2023.117168">10.1016/j.ijms.2023.117168</a>.
  short: F. Kluibenschedl, A. Ploner, C. Meisenbichler, R. Konrat, T. Müller, International
    Journal of Mass Spectrometry 495 (2024).
date_created: 2023-12-10T23:00:57Z
date_published: 2024-01-01T00:00:00Z
date_updated: 2025-09-04T11:30:59Z
day: '01'
ddc:
- '540'
department:
- _id: GradSch
doi: 10.1016/j.ijms.2023.117168
external_id:
  isi:
  - '001125054400001'
file:
- access_level: open_access
  checksum: 6c5eb6dc07af70a59251d2c6fed38894
  content_type: application/pdf
  creator: dernst
  date_created: 2024-07-16T08:27:34Z
  date_updated: 2024-07-16T08:27:34Z
  file_id: '17256'
  file_name: 2024_IJMS_Kluibenschedl.pdf
  file_size: 3003139
  relation: main_file
  success: 1
file_date_updated: 2024-07-16T08:27:34Z
has_accepted_license: '1'
intvolume: '       495'
isi: 1
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
publication: International Journal of Mass Spectrometry
publication_identifier:
  issn:
  - 1387-3806
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Advanced motion tracking for interactive mass spectrometry imaging (IMSI)
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 495
year: '2024'
...
---
_id: '14660'
abstract:
- lang: eng
  text: "The classical Steinitz theorem states that if the origin belongs to the interior
    of the convex hull of a set \U0001D446⊂ℝ\U0001D451, then there are at most 2\U0001D451
    points of \U0001D446 whose convex hull contains the origin in the interior. Bárány,
    Katchalski,and Pach proved the following quantitative version of Steinitz’s theorem.
    Let \U0001D444 be a convex polytope in ℝ\U0001D451 containing the standard Euclidean
    unit ball \U0001D401\U0001D451. Then there exist at most 2\U0001D451 vertices
    of \U0001D444 whose convex hull \U0001D444′ satisfies \U0001D45F\U0001D401\U0001D451⊂\U0001D444′
    with \U0001D45F⩾\U0001D451−2\U0001D451. They conjectured that \U0001D45F⩾\U0001D450\U0001D451−1∕2
    holds with a universal constant \U0001D450>0. We prove \U0001D45F⩾15\U0001D4512,
    the first polynomial lower bound on \U0001D45F. Furthermore, we show that \U0001D45F
    is not greater than 2/√\U0001D451."
acknowledgement: M.N. was supported by the János Bolyai Scholarship of the Hungarian
  Academy of Sciences aswell as the National Research, Development and Innovation
  Fund (NRDI) grants K119670 andK131529, and the ÚNKP-22-5 New National Excellence
  Program of the Ministry for Innovationand Technology from the source of the NRDI
  as well as the ELTE TKP 2021-NKTA-62 fundingscheme
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Grigory
  full_name: Ivanov, Grigory
  id: 87744F66-5C6F-11EA-AFE0-D16B3DDC885E
  last_name: Ivanov
- first_name: Márton
  full_name: Naszódi, Márton
  last_name: Naszódi
citation:
  ama: 'Ivanov G, Naszódi M. Quantitative Steinitz theorem: A polynomial bound. <i>Bulletin
    of the London Mathematical Society</i>. 2024;56(2):796-802. doi:<a href="https://doi.org/10.1112/blms.12965">10.1112/blms.12965</a>'
  apa: 'Ivanov, G., &#38; Naszódi, M. (2024). Quantitative Steinitz theorem: A polynomial
    bound. <i>Bulletin of the London Mathematical Society</i>. London Mathematical
    Society. <a href="https://doi.org/10.1112/blms.12965">https://doi.org/10.1112/blms.12965</a>'
  chicago: 'Ivanov, Grigory, and Márton Naszódi. “Quantitative Steinitz Theorem: A
    Polynomial Bound.” <i>Bulletin of the London Mathematical Society</i>. London
    Mathematical Society, 2024. <a href="https://doi.org/10.1112/blms.12965">https://doi.org/10.1112/blms.12965</a>.'
  ieee: 'G. Ivanov and M. Naszódi, “Quantitative Steinitz theorem: A polynomial bound,”
    <i>Bulletin of the London Mathematical Society</i>, vol. 56, no. 2. London Mathematical
    Society, pp. 796–802, 2024.'
  ista: 'Ivanov G, Naszódi M. 2024. Quantitative Steinitz theorem: A polynomial bound.
    Bulletin of the London Mathematical Society. 56(2), 796–802.'
  mla: 'Ivanov, Grigory, and Márton Naszódi. “Quantitative Steinitz Theorem: A Polynomial
    Bound.” <i>Bulletin of the London Mathematical Society</i>, vol. 56, no. 2, London
    Mathematical Society, 2024, pp. 796–802, doi:<a href="https://doi.org/10.1112/blms.12965">10.1112/blms.12965</a>.'
  short: G. Ivanov, M. Naszódi, Bulletin of the London Mathematical Society 56 (2024)
    796–802.
corr_author: '1'
date_created: 2023-12-10T23:00:58Z
date_published: 2024-02-01T00:00:00Z
date_updated: 2025-09-04T11:31:49Z
day: '01'
ddc:
- '510'
department:
- _id: UlWa
doi: 10.1112/blms.12965
external_id:
  arxiv:
  - '2212.04308'
  isi:
  - '001113277100001'
file:
- access_level: open_access
  checksum: 30ea0694757bc668cf7cd15ae357b35e
  content_type: application/pdf
  creator: dernst
  date_created: 2024-07-16T10:35:10Z
  date_updated: 2024-07-16T10:35:10Z
  file_id: '17259'
  file_name: 2024_BulletinLondonMathSoc_Ivanov.pdf
  file_size: 111756
  relation: main_file
  success: 1
file_date_updated: 2024-07-16T10:35:10Z
has_accepted_license: '1'
intvolume: '        56'
isi: 1
issue: '2'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
page: 796-802
publication: Bulletin of the London Mathematical Society
publication_identifier:
  eissn:
  - 1469-2120
  issn:
  - 0024-6093
publication_status: published
publisher: London Mathematical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Quantitative Steinitz theorem: A polynomial bound'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 56
year: '2024'
...
---
_id: '14665'
abstract:
- lang: eng
  text: We derive lower bounds on the maximal rates for multiple packings in high-dimensional
    Euclidean spaces. For any N > 0 and L ∈ Z ≥2 , a multiple packing is a set C of
    points in R n such that any point in R n lies in the intersection of at most L
    - 1 balls of radius √ nN around points in C . This is a natural generalization
    of the sphere packing problem. We study the multiple packing problem for both
    bounded point sets whose points have norm at most √ nP for some constant P > 0,
    and unbounded point sets whose points are allowed to be anywhere in R n . Given
    a well-known connection with coding theory, multiple packings can be viewed as
    the Euclidean analog of list-decodable codes, which are well-studied over finite
    fields. We derive the best known lower bounds on the optimal multiple packing
    density. This is accomplished by establishing an inequality which relates the
    list-decoding error exponent for additive white Gaussian noise channels, a quantity
    of average-case nature, to the list-decoding radius, a quantity of worst-case
    nature. We also derive novel bounds on the list-decoding error exponent for infinite
    constellations and closed-form expressions for the list-decoding error exponents
    for the power-constrained AWGN channel, which may be of independent interest beyond
    multiple packing.
acknowledgement: "The work of Yihan Zhang was supported by the European Union’s Horizon
  2020 Research and Innovation Programme under Grant 682203-ERC-[Inf-Speed-Tradeoff].
  The work of Shashank Vatedka was supported in part by the Core Research Grant from
  the Science and\r\nEngineering Research Board, India, under Grant CRG/2022/004464;
  and in\r\npart by the Department of Science and Technology (DST), India, under Grant\r\nDST/INT/RUS/RSF/P-41/2020
  (TPN No. 65025)."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Yihan
  full_name: Zhang, Yihan
  id: 2ce5da42-b2ea-11eb-bba5-9f264e9d002c
  last_name: Zhang
  orcid: 0000-0002-6465-6258
- first_name: Shashank
  full_name: Vatedka, Shashank
  last_name: Vatedka
citation:
  ama: 'Zhang Y, Vatedka S. Multiple packing: Lower bounds via error exponents. <i>IEEE
    Transactions on Information Theory</i>. 2024;70(2):1008-1039. doi:<a href="https://doi.org/10.1109/TIT.2023.3334032">10.1109/TIT.2023.3334032</a>'
  apa: 'Zhang, Y., &#38; Vatedka, S. (2024). Multiple packing: Lower bounds via error
    exponents. <i>IEEE Transactions on Information Theory</i>. IEEE. <a href="https://doi.org/10.1109/TIT.2023.3334032">https://doi.org/10.1109/TIT.2023.3334032</a>'
  chicago: 'Zhang, Yihan, and Shashank Vatedka. “Multiple Packing: Lower Bounds via
    Error Exponents.” <i>IEEE Transactions on Information Theory</i>. IEEE, 2024.
    <a href="https://doi.org/10.1109/TIT.2023.3334032">https://doi.org/10.1109/TIT.2023.3334032</a>.'
  ieee: 'Y. Zhang and S. Vatedka, “Multiple packing: Lower bounds via error exponents,”
    <i>IEEE Transactions on Information Theory</i>, vol. 70, no. 2. IEEE, pp. 1008–1039,
    2024.'
  ista: 'Zhang Y, Vatedka S. 2024. Multiple packing: Lower bounds via error exponents.
    IEEE Transactions on Information Theory. 70(2), 1008–1039.'
  mla: 'Zhang, Yihan, and Shashank Vatedka. “Multiple Packing: Lower Bounds via Error
    Exponents.” <i>IEEE Transactions on Information Theory</i>, vol. 70, no. 2, IEEE,
    2024, pp. 1008–39, doi:<a href="https://doi.org/10.1109/TIT.2023.3334032">10.1109/TIT.2023.3334032</a>.'
  short: Y. Zhang, S. Vatedka, IEEE Transactions on Information Theory 70 (2024) 1008–1039.
corr_author: '1'
date_created: 2023-12-10T23:01:00Z
date_published: 2024-02-01T00:00:00Z
date_updated: 2025-09-04T11:32:49Z
day: '01'
department:
- _id: MaMo
doi: 10.1109/TIT.2023.3334032
external_id:
  arxiv:
  - '2211.04408'
  isi:
  - '001166812100008'
intvolume: '        70'
isi: 1
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2211.04408
month: '02'
oa: 1
oa_version: Preprint
page: 1008-1039
publication: IEEE Transactions on Information Theory
publication_identifier:
  eissn:
  - 1557-9654
  issn:
  - 0018-9448
publication_status: published
publisher: IEEE
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Multiple packing: Lower bounds via error exponents'
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 70
year: '2024'
...
---
_id: '14683'
abstract:
- lang: eng
  text: "Mosaic analysis with double markers (MADM) technology enables the generation
    of genetic mosaic tissue in mice and high-resolution phenotyping at the individual
    cell level. Here, we present a protocol for isolating MADM-labeled cells with
    high yield for downstream molecular analyses using fluorescence-activated cell
    sorting (FACS). We describe steps for generating MADM-labeled mice, perfusion,
    single-cell suspension, and debris removal. We then detail procedures for cell
    sorting by FACS and downstream analysis. This protocol is suitable for embryonic
    to adult mice.\r\nFor complete details on the use and execution of this protocol,
    please refer to Contreras et al. (2021).1"
acknowledged_ssus:
- _id: Bio
- _id: PreCl
acknowledgement: This research was supported by the Scientific Service Units (SSU)
  at IST Austria through resources provided by the Imaging & Optics Facility (IOF)
  and Preclinical Facilities (PCF). N.A. received support from FWF Firnberg-Programme
  (T 1031). G.C. received support from the European Union’s Horizon 2020 research
  and innovation programme under the Marie Skłodowska-Curie grant agreement no. 754411
  as an ISTplus postdoctoral fellow. This work was also supported by IST Austria institutional
  funds, FWF SFB F78 to S.H., and the European Research Council (ERC) under the European
  Union’s Horizon 2020 research and innovation programme (grant agreement no. 725780
  LinPro) to S.H.
article_number: '102771'
article_processing_charge: Yes (in subscription journal)
article_type: review
author:
- first_name: Nicole
  full_name: Amberg, Nicole
  id: 4CD6AAC6-F248-11E8-B48F-1D18A9856A87
  last_name: Amberg
  orcid: 0000-0002-3183-8207
- first_name: Giselle T
  full_name: Cheung, Giselle T
  id: 471195F6-F248-11E8-B48F-1D18A9856A87
  last_name: Cheung
  orcid: 0000-0001-8457-2572
- first_name: Simon
  full_name: Hippenmeyer, Simon
  id: 37B36620-F248-11E8-B48F-1D18A9856A87
  last_name: Hippenmeyer
  orcid: 0000-0003-2279-1061
citation:
  ama: Amberg N, Cheung GT, Hippenmeyer S. Protocol for sorting cells from mouse brains
    labeled with mosaic analysis with double markers by flow cytometry. <i>STAR Protocols</i>.
    2024;5(1). doi:<a href="https://doi.org/10.1016/j.xpro.2023.102771">10.1016/j.xpro.2023.102771</a>
  apa: Amberg, N., Cheung, G. T., &#38; Hippenmeyer, S. (2024). Protocol for sorting
    cells from mouse brains labeled with mosaic analysis with double markers by flow
    cytometry. <i>STAR Protocols</i>. Elsevier. <a href="https://doi.org/10.1016/j.xpro.2023.102771">https://doi.org/10.1016/j.xpro.2023.102771</a>
  chicago: Amberg, Nicole, Giselle T Cheung, and Simon Hippenmeyer. “Protocol for
    Sorting Cells from Mouse Brains Labeled with Mosaic Analysis with Double Markers
    by Flow Cytometry.” <i>STAR Protocols</i>. Elsevier, 2024. <a href="https://doi.org/10.1016/j.xpro.2023.102771">https://doi.org/10.1016/j.xpro.2023.102771</a>.
  ieee: N. Amberg, G. T. Cheung, and S. Hippenmeyer, “Protocol for sorting cells from
    mouse brains labeled with mosaic analysis with double markers by flow cytometry,”
    <i>STAR Protocols</i>, vol. 5, no. 1. Elsevier, 2024.
  ista: Amberg N, Cheung GT, Hippenmeyer S. 2024. Protocol for sorting cells from
    mouse brains labeled with mosaic analysis with double markers by flow cytometry.
    STAR Protocols. 5(1), 102771.
  mla: Amberg, Nicole, et al. “Protocol for Sorting Cells from Mouse Brains Labeled
    with Mosaic Analysis with Double Markers by Flow Cytometry.” <i>STAR Protocols</i>,
    vol. 5, no. 1, 102771, Elsevier, 2024, doi:<a href="https://doi.org/10.1016/j.xpro.2023.102771">10.1016/j.xpro.2023.102771</a>.
  short: N. Amberg, G.T. Cheung, S. Hippenmeyer, STAR Protocols 5 (2024).
corr_author: '1'
date_created: 2023-12-13T11:48:05Z
date_published: 2024-03-15T00:00:00Z
date_updated: 2025-04-15T08:23:06Z
day: '15'
ddc:
- '570'
department:
- _id: SiHi
doi: 10.1016/j.xpro.2023.102771
ec_funded: 1
external_id:
  pmid:
  - '38070137'
file:
- access_level: open_access
  checksum: 3f0ee62e04bf5a44b45b035662826e95
  content_type: application/pdf
  creator: dernst
  date_created: 2024-07-16T11:50:03Z
  date_updated: 2024-07-16T11:50:03Z
  file_id: '17260'
  file_name: 2024_STARProtoc_Amberg.pdf
  file_size: 8871807
  relation: main_file
  success: 1
file_date_updated: 2024-07-16T11:50:03Z
has_accepted_license: '1'
intvolume: '         5'
issue: '1'
keyword:
- General Immunology and Microbiology
- General Biochemistry
- Genetics and Molecular Biology
- General Neuroscience
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 268F8446-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: T01031
  name: Role of Eed in neural stem cell lineage progression
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
- _id: 059F6AB4-7A3F-11EA-A408-12923DDC885E
  grant_number: F7805
  name: Stem Cell Modulation in Neural Development and Regeneration/ P05-Molecular
    Mechanisms of Neural Stem Cell Lineage Progression
- _id: 260018B0-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '725780'
  name: Principles of Neural Stem Cell Lineage Progression in Cerebral Cortex Development
publication: STAR Protocols
publication_identifier:
  issn:
  - 2666-1667
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Protocol for sorting cells from mouse brains labeled with mosaic analysis with
  double markers by flow cytometry
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 5
year: '2024'
...
---
_id: '14687'
abstract:
- lang: eng
  text: The short history of research on Li-O2 batteries has seen a remarkable number
    of mechanistic U-turns over the years. From the initial use of carbonate electrolytes,
    that were then found to be entirely unsuitable, to the belief that (su)peroxide
    was solely responsible for degradation, before the more reactive singlet oxygen
    was found to form, to the hypothesis that capacity depends on a competing surface/solution
    mechanism before a practically exclusive solution mechanism was identified. Herein,
    we argue for an ever-fresh look at the reported data without bias towards supposedly
    established explanations. We explain how the latest findings on rate and capacity
    limits, as well as the origin of side reactions, are connected via the disproportionation
    (DISP) step in the (dis)charge mechanism. Therefrom, directions emerge for the
    design of electrolytes and mediators on how to suppress side reactions and to
    enable high rate and high reversible capacity.
acknowledgement: S.A.F. is indebted to ISTA for support. R.B.J. thanks the European
  Union's Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie
  grant agreement No 101034413 for funding. B.P. thanks Alistore ERI for providing
  a PhD scholarship.
article_number: e202316476
article_processing_charge: Yes (via OA deal)
article_type: review
author:
- first_name: Rajesh B
  full_name: Jethwa, Rajesh B
  id: 4cc538d5-803f-11ed-ab7e-8139573aad8f
  last_name: Jethwa
  orcid: 0000-0002-0404-4356
- first_name: Soumyadip
  full_name: Mondal, Soumyadip
  id: d25d21ef-dc8d-11ea-abe3-ec4576307f48
  last_name: Mondal
- first_name: Bhargavi
  full_name: Pant, Bhargavi
  id: 50c64d4d-eb97-11eb-a6c2-d33e5e14f112
  last_name: Pant
- first_name: Stefan Alexander
  full_name: Freunberger, Stefan Alexander
  id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
  last_name: Freunberger
  orcid: 0000-0003-2902-5319
citation:
  ama: Jethwa RB, Mondal S, Pant B, Freunberger SA. To DISP or not? The far‐reaching
    reaction mechanisms underpinning Lithium‐air batteries. <i>Angewandte Chemie International
    Edition</i>. 2024;63(28). doi:<a href="https://doi.org/10.1002/anie.202316476">10.1002/anie.202316476</a>
  apa: Jethwa, R. B., Mondal, S., Pant, B., &#38; Freunberger, S. A. (2024). To DISP
    or not? The far‐reaching reaction mechanisms underpinning Lithium‐air batteries.
    <i>Angewandte Chemie International Edition</i>. Wiley. <a href="https://doi.org/10.1002/anie.202316476">https://doi.org/10.1002/anie.202316476</a>
  chicago: Jethwa, Rajesh B, Soumyadip Mondal, Bhargavi Pant, and Stefan Alexander
    Freunberger. “To DISP or Not? The Far‐reaching Reaction Mechanisms Underpinning
    Lithium‐air Batteries.” <i>Angewandte Chemie International Edition</i>. Wiley,
    2024. <a href="https://doi.org/10.1002/anie.202316476">https://doi.org/10.1002/anie.202316476</a>.
  ieee: R. B. Jethwa, S. Mondal, B. Pant, and S. A. Freunberger, “To DISP or not?
    The far‐reaching reaction mechanisms underpinning Lithium‐air batteries,” <i>Angewandte
    Chemie International Edition</i>, vol. 63, no. 28. Wiley, 2024.
  ista: Jethwa RB, Mondal S, Pant B, Freunberger SA. 2024. To DISP or not? The far‐reaching
    reaction mechanisms underpinning Lithium‐air batteries. Angewandte Chemie International
    Edition. 63(28), e202316476.
  mla: Jethwa, Rajesh B., et al. “To DISP or Not? The Far‐reaching Reaction Mechanisms
    Underpinning Lithium‐air Batteries.” <i>Angewandte Chemie International Edition</i>,
    vol. 63, no. 28, e202316476, Wiley, 2024, doi:<a href="https://doi.org/10.1002/anie.202316476">10.1002/anie.202316476</a>.
  short: R.B. Jethwa, S. Mondal, B. Pant, S.A. Freunberger, Angewandte Chemie International
    Edition 63 (2024).
corr_author: '1'
date_created: 2023-12-15T16:10:13Z
date_published: 2024-07-08T00:00:00Z
date_updated: 2026-04-07T12:27:23Z
day: '08'
ddc:
- '540'
department:
- _id: StFr
- _id: GradSch
doi: 10.1002/anie.202316476
ec_funded: 1
external_id:
  isi:
  - '001241932700001'
  pmid:
  - '38095355'
file:
- access_level: open_access
  checksum: fe2c23454279eb9d76ed6ca9970c21c7
  content_type: application/pdf
  creator: dernst
  date_created: 2024-07-16T11:54:46Z
  date_updated: 2024-07-16T11:54:46Z
  file_id: '17261'
  file_name: 2024_AngChemieInt_Jethwa.pdf
  file_size: 4766445
  relation: main_file
  success: 1
file_date_updated: 2024-07-16T11:54:46Z
has_accepted_license: '1'
intvolume: '        63'
isi: 1
issue: '28'
keyword:
- General Chemistry
- Catalysis
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
  call_identifier: H2020
  grant_number: '101034413'
  name: 'IST-BRIDGE: International postdoctoral program'
publication: Angewandte Chemie International Edition
publication_identifier:
  eissn:
  - 1521-3773
  issn:
  - 1433-7851
publication_status: published
publisher: Wiley
quality_controlled: '1'
related_material:
  record:
  - id: '20607'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: To DISP or not? The far‐reaching reaction mechanisms underpinning Lithium‐air
  batteries
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 63
year: '2024'
...
