[{"article_number":"23:1-23:26","publication_status":"published","abstract":[{"lang":"eng","text":"Consider a 4-player version of Matching Pennies where a team of three players competes against the Devil. Each player simultaneously says \"Heads\" or \"Tails\". The team wins if all four choices match; otherwise the Devil wins. If all team players randomise independently, they win with probability 1/8; if all players share a common source of randomness, they win with probability 1/2. What happens when each pair of team players shares a source of randomness? Can the team do better than win with probability 1/4? The surprising (and nontrivial) answer is yes!\r\nWe introduce Dicey Games, a formal framework motivated by the study of distributed systems with shared sources of randomness (of which the above example is a specific instance). We characterise the existence, representation and computational complexity of optimal strategies in Dicey Games, and we study the problem of allocating limited sources of randomness optimally within a team."}],"volume":380,"keyword":["Concurrent games","Shared randomness","Topology","Algebraic Geometry"],"publication":"41st Annual Symposium on Logic in Computer Science","type":"conference","date_created":"2026-08-02T22:01:52Z","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"file":[{"creator":"dernst","date_created":"2026-08-03T07:02:30Z","date_updated":"2026-08-03T07:02:30Z","content_type":"application/pdf","access_level":"open_access","relation":"main_file","success":1,"file_size":919708,"file_name":"2026_LIPICSLICS_Brice.pdf","checksum":"5d0ff4d267565188a8b4c7502e1bd243","file_id":"22625"}],"ddc":["000"],"ec_funded":1,"title":"Dicey games: Shared sources of randomness in distributed systems","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"Schloss Dagstuhl - Leibniz-Zentrum für Informatik","year":"2026","license":"https://creativecommons.org/licenses/by/4.0/","_id":"22617","date_updated":"2026-08-03T07:03:28Z","publication_identifier":{"issn":["1868-8969"],"isbn":["9783959774345"]},"citation":{"apa":"Brice, L. J., Henzinger, T. A., &#38; Thejaswini, K. S. (2026). Dicey games: Shared sources of randomness in distributed systems. In <i>41st Annual Symposium on Logic in Computer Science</i> (Vol. 380). Lisbon, Portugal: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. <a href=\"https://doi.org/10.4230/LIPIcs.LICS.2026.23\">https://doi.org/10.4230/LIPIcs.LICS.2026.23</a>","chicago":"Brice, Leonard J, Thomas A Henzinger, and K. S. Thejaswini. “Dicey Games: Shared Sources of Randomness in Distributed Systems.” In <i>41st Annual Symposium on Logic in Computer Science</i>, Vol. 380. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2026. <a href=\"https://doi.org/10.4230/LIPIcs.LICS.2026.23\">https://doi.org/10.4230/LIPIcs.LICS.2026.23</a>.","mla":"Brice, Leonard J., et al. “Dicey Games: Shared Sources of Randomness in Distributed Systems.” <i>41st Annual Symposium on Logic in Computer Science</i>, vol. 380, 23:1-23:26, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2026, doi:<a href=\"https://doi.org/10.4230/LIPIcs.LICS.2026.23\">10.4230/LIPIcs.LICS.2026.23</a>.","ista":"Brice LJ, Henzinger TA, Thejaswini KS. 2026. Dicey games: Shared sources of randomness in distributed systems. 41st Annual Symposium on Logic in Computer Science. LICS: Logic in Computer Science, LIPIcs, vol. 380, 23:1-23:26.","ieee":"L. J. Brice, T. A. Henzinger, and K. S. Thejaswini, “Dicey games: Shared sources of randomness in distributed systems,” in <i>41st Annual Symposium on Logic in Computer Science</i>, Lisbon, Portugal, 2026, vol. 380.","short":"L.J. Brice, T.A. Henzinger, K.S. Thejaswini, in:, 41st Annual Symposium on Logic in Computer Science, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2026.","ama":"Brice LJ, Henzinger TA, Thejaswini KS. Dicey games: Shared sources of randomness in distributed systems. In: <i>41st Annual Symposium on Logic in Computer Science</i>. Vol 380. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2026. doi:<a href=\"https://doi.org/10.4230/LIPIcs.LICS.2026.23\">10.4230/LIPIcs.LICS.2026.23</a>"},"conference":{"location":"Lisbon, Portugal","start_date":"2026-07-20","end_date":"2026-07-23","name":"LICS: Logic in Computer Science"},"status":"public","quality_controlled":"1","department":[{"_id":"ToHe"}],"oa_version":"Published Version","OA_type":"gold","oa":1,"date_published":"2026-07-09T00:00:00Z","project":[{"name":"Vigilant Algorithmic Monitoring of Software","call_identifier":"H2020","_id":"62781420-2b32-11ec-9570-8d9b63373d4d","grant_number":"101020093"}],"external_id":{"arxiv":["2601.18303"]},"intvolume":"       380","alternative_title":["LIPIcs"],"arxiv":1,"corr_author":"1","supplementarymaterial":"no","acknowledgement":"This work was supported in part by the ERC-2020-AdG 101020093 (VAMOS).\r\nLéonard Brice: Part of this work was realised when this author was an FNRS aspirant at Université libre de Bruxelles.\r\nK. S. Thejaswini: Part of this work was realised when this author was a post-doctoral researcher at IST Austria.\r\nAcknowledgements We thank all our colleagues who took the time to hear our puzzle and wasted several hours of their research time in pursuit of the optimal bounds for the 3-player matching.\r\npennies problem.\r\n","author":[{"id":"ce3b3409-db6c-11f0-aa64-ad678f7fd937","first_name":"Leonard J","last_name":"Brice","full_name":"Brice, Leonard J"},{"last_name":"Henzinger","full_name":"Henzinger, Thomas A","orcid":"0000-0002-2985-7724","first_name":"Thomas A","id":"40876CD8-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Thejaswini","full_name":"Thejaswini, K. S.","first_name":"K. S."}],"month":"07","file_date_updated":"2026-08-03T07:02:30Z","doi":"10.4230/LIPIcs.LICS.2026.23","das_tickbox":"0","OA_place":"publisher","has_accepted_license":"1","day":"09","researchdata_availability":"no","scopus_import":"1","language":[{"iso":"eng"}],"article_processing_charge":"No"},{"citation":{"apa":"Depope, N., Depope, A., Archodoulaki, V. M., Dabrowska, A., Lendl, B., Mautner, A., … Bartl, A. (2026). DES formulation for recycling synthetic fibre textile waste containing elastane. <i>Waste Management</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.wasman.2026.115736\">https://doi.org/10.1016/j.wasman.2026.115736</a>","chicago":"Depope, Nika, Al Depope, Vasiliki Maria Archodoulaki, Alicja Dabrowska, Bernhard Lendl, Andreas Mautner, Wolfgang Ipsmiller, and Andreas Bartl. “DES Formulation for Recycling Synthetic Fibre Textile Waste Containing Elastane.” <i>Waste Management</i>. Elsevier, 2026. <a href=\"https://doi.org/10.1016/j.wasman.2026.115736\">https://doi.org/10.1016/j.wasman.2026.115736</a>.","mla":"Depope, Nika, et al. “DES Formulation for Recycling Synthetic Fibre Textile Waste Containing Elastane.” <i>Waste Management</i>, vol. 224, 115736, Elsevier, 2026, doi:<a href=\"https://doi.org/10.1016/j.wasman.2026.115736\">10.1016/j.wasman.2026.115736</a>.","ista":"Depope N, Depope A, Archodoulaki VM, Dabrowska A, Lendl B, Mautner A, Ipsmiller W, Bartl A. 2026. DES formulation for recycling synthetic fibre textile waste containing elastane. Waste Management. 224, 115736.","short":"N. Depope, A. Depope, V.M. Archodoulaki, A. Dabrowska, B. Lendl, A. Mautner, W. Ipsmiller, A. Bartl, Waste Management 224 (2026).","ieee":"N. Depope <i>et al.</i>, “DES formulation for recycling synthetic fibre textile waste containing elastane,” <i>Waste Management</i>, vol. 224. Elsevier, 2026.","ama":"Depope N, Depope A, Archodoulaki VM, et al. DES formulation for recycling synthetic fibre textile waste containing elastane. <i>Waste Management</i>. 2026;224. doi:<a href=\"https://doi.org/10.1016/j.wasman.2026.115736\">10.1016/j.wasman.2026.115736</a>"},"publication_identifier":{"issn":["0956-053X"],"eissn":["1879-2456"]},"date_updated":"2026-08-03T06:35:45Z","pmid":1,"_id":"22614","year":"2026","title":"DES formulation for recycling synthetic fibre textile waste containing elastane","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"Elsevier","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"ddc":["540"],"date_created":"2026-08-02T22:01:51Z","type":"journal_article","publication":"Waste Management","volume":224,"abstract":[{"lang":"eng","text":"This study presents a sustainable and non-destructive recycling strategy for synthetic fibres, specifically polyethylene terephthalate (PET), polyamide 6 (PA6), polyamide 66 (PA66), and elastane (EL). Two deep eutectic solvents (DESs) were synthesised, enabling selective dissolution of EL without degrading the surrounding polymer matrices. The dissolved EL phase was subsequently recovered by centrifugation, demonstrating its potential for material reuse. Comprehensive characterisation confirmed that the process preserves fibre integrity. SEM imaging revealed no detectable changes in fibre morphology, while DSC and TGA analyses indicated that the thermal properties of both EL and synthetic polymers were preserved. ATR-FTIR spectroscopy verified the absence of measurable chemical modifications. Mechanical testing showed that solvent treatment did not compromise the tensile performance of PET, PA6, or PA66 fibres, confirming their suitability for fibre-to-fibre recycling.\r\nThe recovered fibres were successfully re-extruded into continuous filaments, confirming their melt processability and enabling potential applications in textile yarns, technical fibres, nonwovens, and polymer components via melt-spinning or moulding. These results demonstrate that the proposed DES-based method offers a promising approach for the circular recycling of complex fibre blends and provides a viable pathway towards industrial implementation."}],"article_number":"115736","article_type":"original","publication_status":"epub_ahead","scopus_import":"1","researchdata_availability":"upon request","article_processing_charge":"Yes (via OA deal)","language":[{"iso":"eng"}],"day":"15","main_file_link":[{"url":"https://doi.org/10.1016/j.wasman.2026.115736","open_access":"1"}],"has_accepted_license":"1","OA_place":"publisher","das_tickbox":"1","doi":"10.1016/j.wasman.2026.115736","PlanS_conform":"1","month":"07","supplementarymaterial":"yes","acknowledgement":"The financial support by the Austrian Federal Ministry of Economy, Energy and Tourism, the National Foundation for Research, Technology and Development and the Christian Doppler Research Association is gratefully acknowledged. The authors acknowledge “Open Access Funding by TU Wien” for financial support through its Open Access Funding Program.\r\nSpecial thanks are extended to EREMA Group GmbH, SALESIANER MIETTEX GmbH and Starlinger & Co GmbH for their material support and valuable input throughout the development of this study.","author":[{"last_name":"Depope","full_name":"Depope, Nika","first_name":"Nika"},{"first_name":"Al","full_name":"Depope, Al","last_name":"Depope","id":"0b77531d-dbcd-11ea-9d1d-a8eee0bf3830"},{"full_name":"Archodoulaki, Vasiliki Maria","last_name":"Archodoulaki","first_name":"Vasiliki Maria"},{"first_name":"Alicja","last_name":"Dabrowska","full_name":"Dabrowska, Alicja"},{"full_name":"Lendl, Bernhard","last_name":"Lendl","first_name":"Bernhard"},{"first_name":"Andreas","full_name":"Mautner, Andreas","last_name":"Mautner"},{"first_name":"Wolfgang","full_name":"Ipsmiller, Wolfgang","last_name":"Ipsmiller"},{"first_name":"Andreas","last_name":"Bartl","full_name":"Bartl, Andreas"}],"intvolume":"       224","dataavailabilitystatement":"Data will be made available on request.","date_published":"2026-07-15T00:00:00Z","external_id":{"pmid":["42456595"]},"oa":1,"OA_type":"hybrid","status":"public","quality_controlled":"1","oa_version":"Published Version","department":[{"_id":"MaRo"}]},{"has_accepted_license":"1","OA_place":"publisher","researchdata_availability":"no","scopus_import":"1","language":[{"iso":"eng"}],"article_processing_charge":"Yes (in subscription journal)","day":"10","main_file_link":[{"url":"https://doi.org/10.1017/etds.2026.10324","open_access":"1"}],"PlanS_conform":"1","month":"07","das_tickbox":"0","doi":"10.1017/etds.2026.10324","acknowledgement":"We thank the anonymous referee for identifying an error in an earlier\r\nversion of the paper. We gratefully acknowledge support from UKRI Frontier Research\r\nGrant EP/X033813/1, ERC grant DynAMiCS (101167561) and DFG grant 389792660 as\r\npart of TRR 248. J.O. is also affiliated with Keble College, Oxford as an Emmy Network\r\nfellow.","supplementarymaterial":"no","author":[{"first_name":"Pavol","full_name":"Kebis, Pavol","last_name":"Kebis","id":"2e0132b3-4e98-11ef-b275-cf7281c2802a"},{"last_name":"LUCA","full_name":"LUCA, FLORIAN","first_name":"FLORIAN"},{"first_name":"JOEL","full_name":"OUAKNINE, JOEL","last_name":"OUAKNINE"},{"first_name":"ANDREW","last_name":"SCOONES","full_name":"SCOONES, ANDREW"},{"first_name":"JAMES","last_name":"WORRELL","full_name":"WORRELL, JAMES"}],"arxiv":1,"page":"1-22","status":"public","quality_controlled":"1","oa_version":"Published Version","department":[{"_id":"ToHe"},{"_id":"GradSch"}],"date_published":"2026-07-10T00:00:00Z","external_id":{"arxiv":["2405.05279"]},"OA_type":"hybrid","oa":1,"date_updated":"2026-08-03T06:17:50Z","_id":"22406","citation":{"ieee":"P. Kebis, F. LUCA, J. OUAKNINE, A. SCOONES, and J. WORRELL, “Transcendence for Pisot morphic words over an algebraic base,” <i>Ergodic Theory and Dynamical Systems</i>. Cambridge University Press, pp. 1–22, 2026.","short":"P. Kebis, F. LUCA, J. OUAKNINE, A. SCOONES, J. WORRELL, Ergodic Theory and Dynamical Systems (2026) 1–22.","ista":"Kebis P, LUCA F, OUAKNINE J, SCOONES A, WORRELL J. 2026. Transcendence for Pisot morphic words over an algebraic base. Ergodic Theory and Dynamical Systems., 1–22.","mla":"Kebis, Pavol, et al. “Transcendence for Pisot Morphic Words over an Algebraic Base.” <i>Ergodic Theory and Dynamical Systems</i>, Cambridge University Press, 2026, pp. 1–22, doi:<a href=\"https://doi.org/10.1017/etds.2026.10324\">10.1017/etds.2026.10324</a>.","chicago":"Kebis, Pavol, FLORIAN LUCA, JOEL OUAKNINE, ANDREW SCOONES, and JAMES WORRELL. “Transcendence for Pisot Morphic Words over an Algebraic Base.” <i>Ergodic Theory and Dynamical Systems</i>. Cambridge University Press, 2026. <a href=\"https://doi.org/10.1017/etds.2026.10324\">https://doi.org/10.1017/etds.2026.10324</a>.","apa":"Kebis, P., LUCA, F., OUAKNINE, J., SCOONES, A., &#38; WORRELL, J. (2026). Transcendence for Pisot morphic words over an algebraic base. <i>Ergodic Theory and Dynamical Systems</i>. Cambridge University Press. <a href=\"https://doi.org/10.1017/etds.2026.10324\">https://doi.org/10.1017/etds.2026.10324</a>","ama":"Kebis P, LUCA F, OUAKNINE J, SCOONES A, WORRELL J. Transcendence for Pisot morphic words over an algebraic base. <i>Ergodic Theory and Dynamical Systems</i>. 2026:1-22. doi:<a href=\"https://doi.org/10.1017/etds.2026.10324\">10.1017/etds.2026.10324</a>"},"publication_identifier":{"issn":["0143-3857"],"eissn":["1469-4417"]},"title":"Transcendence for Pisot morphic words over an algebraic base","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"Cambridge University Press","year":"2026","mathsc":["11J81","37B10","11J87"],"date_created":"2026-07-27T05:53:25Z","type":"journal_article","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"ddc":["000"],"abstract":[{"text":"It is known that for a uniform morphic sequence 𝒖 =⟨𝑢𝑛⟩∞\r\n𝑛=0 and an algebraic number 𝛽 such that |𝛽| >1, the number [[𝒖]]𝛽 :=∑∞\r\n𝑛=0(𝑢𝑛/𝛽𝑛) either lies in ℚ⁡(𝛽) or is transcendental. In this paper, we show a similar rational–transcendental dichotomy for sequences defined by irreducible Pisot morphisms on binary alphabets. Subject to the Pisot conjecture (an irreducible Pisot morphism has pure discrete spectrum), we generalise the latter result to arbitrary finite alphabets. In certain cases, we are able to show transcendence of [[𝒖]]𝛽 outright. In particular, for 𝑘 ≥2, if 𝒖 is the k-Bonacci word, then [[𝒖]]𝛽 is transcendental.","lang":"eng"}],"article_type":"original","publication_status":"epub_ahead","publication":"Ergodic Theory and Dynamical Systems","keyword":["balanced-pair algorithm","Cobham’s conjecture","k-Bonacci words","Pisot conjecture","subspace theorem"]},{"intvolume":"        13","dataavailabilitystatement":"Any data not published within this article are available at Erasmus MC, Rotterdam, and Medical University of Vienna. Data will be shared on reasonable request from any qualified investigator, ascertaining anonymization of the individual patients, in line with European privacy regulations.","supplementarymaterial":"no","acknowledgement":"One author (Manuela Paunovic) was removed from the paper due to personal circumstances. Her contributions were removed from the manuscript before final review. The authors thank all patients for their participation and all referring physicians. The authors thank Professor Joachim Weis at the Medical Faculty RWTH Aachen University for his contribution to the manuscript. The authors would like to thank Andrea Polt and Irene Erber at the Medical University of Vienna, and Jacqueline Montanaro at IST Austria, for their assistance in the laboratory. N.A.M.E. van der Beek participates in EURO-NMD. M.W.J. Schreurs, P.A.E. Sillevis Smitt, J.M. de Vries, and M.J. Titulaer are members of the European Reference Network for Rare Immunodeficiency, Autoinflammatory and Autoimmune Diseases–Project ID No 739543 (ERN-RITA; HCP Erasmus MC). IK was funded by the Austrian Science Fund (FWF, T996-B30). RS was funded by the Austrian Science Fund (FWF, SYNABS, I6565-B). JL was funded by German Federal Ministry of Education and Research (BMBF, Forschungsverbund CONNECT-GEN-\r\nERATE, 01 GM2208B). RvS was funded by AEA Seed Grant 2023 and InterAct Grant of Alzheimer Nederland 2023. LS was funded by Instituto de Salud Carlos III (ISCIII, PI21/ 00165) and the Networking Support Scheme funded from the European Union’s Horizon 2020 research and innovation program (EJP RD COFUND-EJP N° 825575). JdV was funded by AEA Seed Grant 2021. RH was funded by grants from the Austrian Science Fund (FWF, SYNABS, I4685-B, I6565-B), Forschungsf¨orderungsgesellschaft (FFG, IGNITE-\r\nMIND, FO999920011), and the Austrian Society of\r\nNeurology (\r\n¨\r\nOsterreichische Gesellschaft f¨ur Neurologie).\r\nMT was funded by the Dutch EpilepsieNL Foundation (NEF 19-08), an Interlaken Leadership award, Dioraphte (2001 0403) the Dutch Research Council (ZonMW, PARADE-\r\nVIMP) and E-RARE JTC 2018 (UltraAIE, 90030376505).","author":[{"first_name":"Yvette S.","full_name":"Crijnen, Yvette S.","last_name":"Crijnen"},{"first_name":"Verena","full_name":"Endmayr, Verena","last_name":"Endmayr"},{"full_name":"Franken, Suzanne C.","last_name":"Franken","first_name":"Suzanne C."},{"first_name":"Nadine A.M.E.","last_name":"Van Der Beek","full_name":"Van Der Beek, Nadine A.M.E."},{"full_name":"Louter, Maartje","last_name":"Louter","first_name":"Maartje"},{"full_name":"Ströbel, Thomas","last_name":"Ströbel","first_name":"Thomas"},{"full_name":"Gelpi, Ellen","last_name":"Gelpi","first_name":"Ellen"},{"full_name":"Koneczny, Inga","last_name":"Koneczny","first_name":"Inga"},{"orcid":"0000-0001-8761-9444","last_name":"Shigemoto","full_name":"Shigemoto, Ryuichi","first_name":"Ryuichi","id":"499F3ABC-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Lewerenz, Jan","last_name":"Lewerenz","first_name":"Jan"},{"full_name":"Högl, Birgit","last_name":"Högl","first_name":"Birgit"},{"first_name":"Julia V.","full_name":"Wanschitz, Julia V.","last_name":"Wanschitz"},{"full_name":"Hofstadt-Van Oy, Ulrich He","last_name":"Hofstadt-Van Oy","first_name":"Ulrich He"},{"full_name":"Van Steenhoven, Robin W.","last_name":"Van Steenhoven","first_name":"Robin W."},{"full_name":"Nagtzaam, Mariska M.P.","last_name":"Nagtzaam","first_name":"Mariska M.P."},{"last_name":"Kerstens","full_name":"Kerstens, Jeroen","first_name":"Jeroen"},{"first_name":"Juliette","full_name":"Brenner, Juliette","last_name":"Brenner"},{"first_name":"Anna E.M.","full_name":"Bastiaansen, Anna E.M.","last_name":"Bastiaansen"},{"full_name":"Verdijk, Robert M.","last_name":"Verdijk","first_name":"Robert M."},{"last_name":"Van Den Bosch","full_name":"Van Den Bosch, Thierry P.P.","first_name":"Thierry P.P."},{"first_name":"Marco","full_name":"Schreurs, Marco","last_name":"Schreurs"},{"first_name":"Sharon","full_name":"Veenbergen, Sharon","last_name":"Veenbergen"},{"last_name":"Verbeek","full_name":"Verbeek, Marcel M.","first_name":"Marcel M."},{"first_name":"Dave L.","last_name":"Roelen","full_name":"Roelen, Dave L."},{"first_name":"Mar","last_name":"Guasp","full_name":"Guasp, Mar"},{"first_name":"Peter A.E.","last_name":"Sillevis Smitt","full_name":"Sillevis Smitt, Peter A.E."},{"first_name":"Lidia","full_name":"Sabater, Lidia","last_name":"Sabater"},{"first_name":"Juna M.","last_name":"De Vries","full_name":"De Vries, Juna M."},{"full_name":"Höftberger, Romana","last_name":"Höftberger","first_name":"Romana"},{"first_name":"Maarten J.","last_name":"Titulaer","full_name":"Titulaer, Maarten J."}],"page":"e200525","status":"public","quality_controlled":"1","department":[{"_id":"RySh"}],"oa_version":"Published Version","date_published":"2026-09-01T00:00:00Z","external_id":{"pmid":["42441930"]},"project":[{"grant_number":"I04638","name":"LGI1 antibody-induced pathophysiology in synapses","_id":"05970B30-7A3F-11EA-A408-12923DDC885E"}],"oa":1,"OA_type":"gold","has_accepted_license":"1","OA_place":"publisher","issue":"5","scopus_import":"1","researchdata_availability":"upon request","article_processing_charge":"Yes","language":[{"iso":"eng"}],"day":"01","file_date_updated":"2026-08-03T08:06:16Z","PlanS_conform":"1","month":"09","das_tickbox":"1","doi":"10.1212/NXI.0000000000200525","date_created":"2026-08-02T22:01:52Z","type":"journal_article","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"ddc":["570"],"file":[{"file_size":1122644,"relation":"main_file","success":1,"access_level":"open_access","file_id":"22631","checksum":"7cc4c4c180a2cf65603a02bef7b75784","file_name":"2026_Neurology_Crijnen.pdf","creator":"dernst","content_type":"application/pdf","date_created":"2026-08-03T08:06:16Z","date_updated":"2026-08-03T08:06:16Z"}],"abstract":[{"text":"Background and Objectives: \r\nAnti-immunoglobulin-like cell adhesion molecule 5 (IgLON5) disease is a novel and poten-\r\ntially treatable entity. Therefore, it is important to recognize all clinical symptoms and di-\r\nagnostic clues. We specifically investigated neuromuscular signs and symptoms and muscle biopsy pathology, providing a link between IgLON5 and clinical features of myopathy.\r\nMethods: \r\nAll patients diagnosed with anti-IgLON5 disease in the Netherlands between 2016 and 2023 were included. Serum and CSF samples were tested with immunohistochemistry on rat brain and in-house cell-based assay using live cells. Biopsies of the vastus lateralis muscle were performed in patients with neuromuscular signs and symptoms and analyzed in Vienna to-\r\ngether with 3 biopsies of non-Dutch patients sent to Vienna for second opinion.\r\nResults: \r\nTwenty patients with anti-IgLON5 disease were included (10 male, 50%). The median age at onset was 61.5 years (range 45–85), and the median time from onset to diagnosis was 30 months (range 3–280). Neuromuscular symptoms were present in over half of the patients (11/20), including proximal limb weakness (n = 11), axial weakness (n = 1), muscle atrophy (n = 6), and fasciculations (n = 5). All 12 muscle biopsies (9 from the Dutch cohort, 3 external) showed mild myopathic alterations, 2 additionally presented target fibers and fiber type grouping (compatible with neu-\r\nrogenic myopathy), and 3 patients showed immune cell infiltration. We found a strong upregulation of IgLON5 expression in muscle fibers in all patients and also in different muscle disease controls, while immunoreactivity in healthy control muscle was faint/absent.\r\nDiscussion: \r\nOur data support that IgLON5 might play a role in muscle regeneration, which might result in proximal myopathy as a prominent clinical feature in anti-IgLON5 disease. This finding broadens the clinical phenotype of anti-IgLON5 disease and can be an important clue for earlier diagnosis and start of immunotherapy.","lang":"eng"}],"publication_status":"published","article_type":"original","publication":"Neurology, Neuroimmunology & Neuroinflammation","volume":13,"date_updated":"2026-08-03T08:16:04Z","pmid":1,"_id":"22615","citation":{"apa":"Crijnen, Y. S., Endmayr, V., Franken, S. C., Van Der Beek, N. A. M. E., Louter, M., Ströbel, T., … Titulaer, M. J. (2026). Muscle regeneration failure may lead to clinical features of myopathy in anti-IgLON5 disease. <i>Neurology, Neuroimmunology &#38; Neuroinflammation</i>. Wolters Kluwer. <a href=\"https://doi.org/10.1212/NXI.0000000000200525\">https://doi.org/10.1212/NXI.0000000000200525</a>","chicago":"Crijnen, Yvette S., Verena Endmayr, Suzanne C. Franken, Nadine A.M.E. Van Der Beek, Maartje Louter, Thomas Ströbel, Ellen Gelpi, et al. “Muscle Regeneration Failure May Lead to Clinical Features of Myopathy in Anti-IgLON5 Disease.” <i>Neurology, Neuroimmunology &#38; Neuroinflammation</i>. Wolters Kluwer, 2026. <a href=\"https://doi.org/10.1212/NXI.0000000000200525\">https://doi.org/10.1212/NXI.0000000000200525</a>.","ista":"Crijnen YS, Endmayr V, Franken SC, Van Der Beek NAME, Louter M, Ströbel T, Gelpi E, Koneczny I, Shigemoto R, Lewerenz J, Högl B, Wanschitz JV, Hofstadt-Van Oy UH, Van Steenhoven RW, Nagtzaam MMP, Kerstens J, Brenner J, Bastiaansen AEM, Verdijk RM, Van Den Bosch TPP, Schreurs M, Veenbergen S, Verbeek MM, Roelen DL, Guasp M, Sillevis Smitt PAE, Sabater L, De Vries JM, Höftberger R, Titulaer MJ. 2026. Muscle regeneration failure may lead to clinical features of myopathy in anti-IgLON5 disease. Neurology, Neuroimmunology &#38; Neuroinflammation. 13(5), e200525.","mla":"Crijnen, Yvette S., et al. “Muscle Regeneration Failure May Lead to Clinical Features of Myopathy in Anti-IgLON5 Disease.” <i>Neurology, Neuroimmunology &#38; Neuroinflammation</i>, vol. 13, no. 5, Wolters Kluwer, 2026, p. e200525, doi:<a href=\"https://doi.org/10.1212/NXI.0000000000200525\">10.1212/NXI.0000000000200525</a>.","ieee":"Y. S. Crijnen <i>et al.</i>, “Muscle regeneration failure may lead to clinical features of myopathy in anti-IgLON5 disease,” <i>Neurology, Neuroimmunology &#38; Neuroinflammation</i>, vol. 13, no. 5. Wolters Kluwer, p. e200525, 2026.","short":"Y.S. Crijnen, V. Endmayr, S.C. Franken, N.A.M.E. Van Der Beek, M. Louter, T. Ströbel, E. Gelpi, I. Koneczny, R. Shigemoto, J. Lewerenz, B. Högl, J.V. Wanschitz, U.H. Hofstadt-Van Oy, R.W. Van Steenhoven, M.M.P. Nagtzaam, J. Kerstens, J. Brenner, A.E.M. Bastiaansen, R.M. Verdijk, T.P.P. Van Den Bosch, M. Schreurs, S. Veenbergen, M.M. Verbeek, D.L. Roelen, M. Guasp, P.A.E. Sillevis Smitt, L. Sabater, J.M. De Vries, R. Höftberger, M.J. Titulaer, Neurology, Neuroimmunology &#38; Neuroinflammation 13 (2026) e200525.","ama":"Crijnen YS, Endmayr V, Franken SC, et al. Muscle regeneration failure may lead to clinical features of myopathy in anti-IgLON5 disease. <i>Neurology, Neuroimmunology &#38; Neuroinflammation</i>. 2026;13(5):e200525. doi:<a href=\"https://doi.org/10.1212/NXI.0000000000200525\">10.1212/NXI.0000000000200525</a>"},"publication_identifier":{"eissn":["2332-7812"]},"title":"Muscle regeneration failure may lead to clinical features of myopathy in anti-IgLON5 disease","publisher":"Wolters Kluwer","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","DOAJ_listed":"1","year":"2026"},{"article_number":"121","article_type":"original","publication_status":"published","abstract":[{"lang":"eng","text":"Accretion disks in active galactic nuclei (AGN) are promising sites for mergers of stellar-mass black holes (BHs) detectable via gravitational waves (GWs). These environments facilitate both in situ formation and dynamical capture of compact objects and their subsequent mergers. The uncertain origin of GW events detected by LIGO, Virgo, and KAGRA motivates searching for accompanying electromagnetic (EM) signatures. Here, we investigate postmerger EM flares associated with jets launched from merger remnants, as well as from the shocked ambient gas as the jet breaks out of the disk. We find that jet breakout produces luminous gamma-ray emission, detectable with MeV-band telescopes. Cooling emission from a shocked circum-BH minidisk, winds, and background AGN disk peaks in the UV and optical, with durations ranging from about an hour to a month, and can be identified through year-long monitoring of ∼103 AGNs with luminosities ranging from ∼1044 to ∼1045 erg s−1. With a single set of parameters, this postmerger jet model produces gamma-ray, hard X-ray, and optical flares similar to those claimed to be associated with GW events. Furthermore, by incorporating a transition from a high- to low-angular-momentum accretion state after the merger, the model avoids excessive BH growth, alleviating tensions with hyper-Eddington accretion scenarios."}],"volume":1006,"publication":"The Astrophysical Journal","type":"journal_article","date_created":"2026-08-02T22:01:52Z","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"file":[{"success":1,"relation":"main_file","file_size":2873666,"access_level":"open_access","file_id":"22630","file_name":"2026_AstrophysicalJournal_Tagawa.pdf","checksum":"767660c73eb8b0a8bf39f54afe240bc6","creator":"dernst","content_type":"application/pdf","date_updated":"2026-08-03T07:58:25Z","date_created":"2026-08-03T07:58:25Z"}],"ddc":["520"],"title":"Electromagnetic flares from compact-object mergers in active galactic nucleus disks: Signatures and predictions","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"IOP Publishing","year":"2026","DOAJ_listed":"1","_id":"22616","date_updated":"2026-08-03T08:00:54Z","publication_identifier":{"eissn":["1538-4357"],"issn":["0004-637X"]},"citation":{"ama":"Tagawa H, Haiman Z, Kimura SS, Yesuf HM, Guo H. Electromagnetic flares from compact-object mergers in active galactic nucleus disks: Signatures and predictions. <i>The Astrophysical Journal</i>. 2026;1006(2). doi:<a href=\"https://doi.org/10.3847/1538-4357/ae7d29\">10.3847/1538-4357/ae7d29</a>","chicago":"Tagawa, Hiromichi, Zoltán Haiman, Shigeo S. Kimura, Hassen M. Yesuf, and Hengxiao Guo. “Electromagnetic Flares from Compact-Object Mergers in Active Galactic Nucleus Disks: Signatures and Predictions.” <i>The Astrophysical Journal</i>. IOP Publishing, 2026. <a href=\"https://doi.org/10.3847/1538-4357/ae7d29\">https://doi.org/10.3847/1538-4357/ae7d29</a>.","apa":"Tagawa, H., Haiman, Z., Kimura, S. S., Yesuf, H. M., &#38; Guo, H. (2026). Electromagnetic flares from compact-object mergers in active galactic nucleus disks: Signatures and predictions. <i>The Astrophysical Journal</i>. IOP Publishing. <a href=\"https://doi.org/10.3847/1538-4357/ae7d29\">https://doi.org/10.3847/1538-4357/ae7d29</a>","short":"H. Tagawa, Z. Haiman, S.S. Kimura, H.M. Yesuf, H. Guo, The Astrophysical Journal 1006 (2026).","ieee":"H. Tagawa, Z. Haiman, S. S. Kimura, H. M. Yesuf, and H. Guo, “Electromagnetic flares from compact-object mergers in active galactic nucleus disks: Signatures and predictions,” <i>The Astrophysical Journal</i>, vol. 1006, no. 2. IOP Publishing, 2026.","ista":"Tagawa H, Haiman Z, Kimura SS, Yesuf HM, Guo H. 2026. Electromagnetic flares from compact-object mergers in active galactic nucleus disks: Signatures and predictions. The Astrophysical Journal. 1006(2), 121.","mla":"Tagawa, Hiromichi, et al. “Electromagnetic Flares from Compact-Object Mergers in Active Galactic Nucleus Disks: Signatures and Predictions.” <i>The Astrophysical Journal</i>, vol. 1006, no. 2, 121, IOP Publishing, 2026, doi:<a href=\"https://doi.org/10.3847/1538-4357/ae7d29\">10.3847/1538-4357/ae7d29</a>."},"quality_controlled":"1","status":"public","department":[{"_id":"ZoHa"}],"oa_version":"Published Version","oa":1,"OA_type":"gold","date_published":"2026-08-01T00:00:00Z","intvolume":"      1006","supplementarymaterial":"yes","acknowledgement":"We thank Wen-Biao Han for fruitful discussions on possible scenarios. H.T. is supported by The National Key R&D Program of China (grant No. 2024YFC2207700). S.S.K. was supported by Japan Society for the Promotion of Science (JSPS) KAKENHI grant numbers 22K14028, 21H04487, and 23H04899 and the Tohoku Initiative for Fostering Global Researchers for Interdisciplinary Sciences (TI-FRIS) of MEXT’s Strategic Professional Development Program for Young Researchers. Z.H. was supported by NASA grant 80NSSC22K0822 and NSF grant AST-2006176.","author":[{"first_name":"Hiromichi","last_name":"Tagawa","full_name":"Tagawa, Hiromichi"},{"id":"7c006e8c-cc0d-11ee-8322-cb904ef76f36","first_name":"Zoltán","last_name":"Haiman","full_name":"Haiman, Zoltán","orcid":"0000-0003-3633-5403"},{"last_name":"Kimura","full_name":"Kimura, Shigeo S.","first_name":"Shigeo S."},{"first_name":"Hassen M.","full_name":"Yesuf, Hassen M.","last_name":"Yesuf"},{"first_name":"Hengxiao","full_name":"Guo, Hengxiao","last_name":"Guo"}],"month":"08","PlanS_conform":"1","file_date_updated":"2026-08-03T07:58:25Z","doi":"10.3847/1538-4357/ae7d29","das_tickbox":"0","OA_place":"publisher","issue":"2","has_accepted_license":"1","day":"01","researchdata_availability":"no","scopus_import":"1","language":[{"iso":"eng"}],"article_processing_charge":"Yes"},{"tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"ddc":["570"],"file":[{"content_type":"application/pdf","date_created":"2026-08-03T09:44:40Z","date_updated":"2026-08-03T09:44:40Z","creator":"dernst","file_id":"22635","checksum":"f9155dc2d9273e43c0caf78dffa96864","file_name":"2026_ScienceAdv_Bradley.pdf","file_size":916329,"relation":"main_file","success":1,"access_level":"open_access"}],"type":"journal_article","date_created":"2026-08-02T22:01:53Z","volume":12,"publication":"Science Advances","article_type":"original","publication_status":"published","abstract":[{"text":"Development depends on precise shaping of molecular gradients, but how natural selection acts to establish precision is unknown. Here, we analyze genes that control differences in the gradient of yellow flower color between two varieties of snapdragon (Antirrhinum). We show that these differences depend, in part, on cis-regulatory variation in the pigment biosynthetic gene, FLAVIA (FLA). FLA interacts multiplicatively with three other loci, one of which is a trans-acting regulator of FLA, to further shape the yellow gradient. All the loci exhibit clines at a hybrid zone, with widths that correlate with phenotypic effect, showing how selection can hone gradient shape with remarkable precision by acting on cis and trans variation at multiple loci.","lang":"eng"}],"publication_identifier":{"eissn":["2375-2548"]},"citation":{"ama":"Bradley D, Boell L, Richardson D, et al. Shaping of developmental gradients through selection on multiple loci in Antirrhinum. <i>Science Advances</i>. 2026;12(29):1-11. doi:<a href=\"https://doi.org/10.1126/sciadv.adx2011\">10.1126/sciadv.adx2011</a>","apa":"Bradley, D., Boell, L., Richardson, D., Copsey, L., Whibley, A., Xu, T., … Coen, E. (2026). Shaping of developmental gradients through selection on multiple loci in Antirrhinum. <i>Science Advances</i>. AAAS. <a href=\"https://doi.org/10.1126/sciadv.adx2011\">https://doi.org/10.1126/sciadv.adx2011</a>","chicago":"Bradley, Desmond, Louis Boell, Daniel Richardson, Lucy Copsey, Annabel Whibley, Ting Xu, Yu’E Zhang, Yongbiao Xue, David Field, and Enrico Coen. “Shaping of Developmental Gradients through Selection on Multiple Loci in Antirrhinum.” <i>Science Advances</i>. AAAS, 2026. <a href=\"https://doi.org/10.1126/sciadv.adx2011\">https://doi.org/10.1126/sciadv.adx2011</a>.","mla":"Bradley, Desmond, et al. “Shaping of Developmental Gradients through Selection on Multiple Loci in Antirrhinum.” <i>Science Advances</i>, vol. 12, no. 29, AAAS, 2026, pp. 1–11, doi:<a href=\"https://doi.org/10.1126/sciadv.adx2011\">10.1126/sciadv.adx2011</a>.","ista":"Bradley D, Boell L, Richardson D, Copsey L, Whibley A, Xu T, Zhang Y, Xue Y, Field D, Coen E. 2026. Shaping of developmental gradients through selection on multiple loci in Antirrhinum. Science Advances. 12(29), 1–11.","ieee":"D. Bradley <i>et al.</i>, “Shaping of developmental gradients through selection on multiple loci in Antirrhinum,” <i>Science Advances</i>, vol. 12, no. 29. AAAS, pp. 1–11, 2026.","short":"D. Bradley, L. Boell, D. Richardson, L. Copsey, A. Whibley, T. Xu, Y. Zhang, Y. Xue, D. Field, E. Coen, Science Advances 12 (2026) 1–11."},"_id":"22620","date_updated":"2026-08-03T09:52:37Z","pmid":1,"year":"2026","DOAJ_listed":"1","title":"Shaping of developmental gradients through selection on multiple loci in Antirrhinum","publisher":"AAAS","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","page":"1-11","supplementarymaterial":"yes","corr_author":"1","acknowledgement":"We thank C. Taylor for plant care, N. Barton for sharing SNP data and useful comments, H. Tavares for useful discussions and bioinformatics, M. Couchman for field and data archiving, T. Li for help with photography and phenotyping, J. Chan for help with ImageJ analyses, and X. Rebocho for organization of field experiments. This work was supported by Biotechnology and Biological Sciences Research Council grants BB/S009256/1 (to E.C.), BB/G009325/1 (to E.C.), BBS/E/JI/230002C (to E.C.), and BBS/E/J/000PR9773 (to E.C.); Biotechnology Biological Sciences Research Council Norwich Research Park Biosciences Doctoral Training Partnership grant BB/M011216/1 (to D.R.); and Natural Science Foundation of China grant 32030007 (to Y.X.)","author":[{"first_name":"Desmond","full_name":"Bradley, Desmond","last_name":"Bradley"},{"first_name":"Louis","full_name":"Boell, Louis","last_name":"Boell"},{"first_name":"Daniel","last_name":"Richardson","full_name":"Richardson, Daniel"},{"first_name":"Lucy","last_name":"Copsey","full_name":"Copsey, Lucy"},{"first_name":"Annabel","last_name":"Whibley","full_name":"Whibley, Annabel"},{"first_name":"Ting","full_name":"Xu, Ting","last_name":"Xu"},{"first_name":"Yu’E","last_name":"Zhang","full_name":"Zhang, Yu’E"},{"first_name":"Yongbiao","last_name":"Xue","full_name":"Xue, Yongbiao"},{"id":"419049E2-F248-11E8-B48F-1D18A9856A87","first_name":"David","orcid":"0000-0002-4014-8478","last_name":"Field","full_name":"Field, David"},{"first_name":"Enrico","last_name":"Coen","full_name":"Coen, Enrico"}],"dataavailabilitystatement":"All data and code needed to evaluate and reproduce the results in the paper are present in the paper and/or the Supplementary Materials. All materials generated in this study are described in Materials and Methods and are available on request from E.C. (enrico.coen@jic.ac.uk).","intvolume":"        12","OA_type":"gold","oa":1,"date_published":"2026-07-17T00:00:00Z","external_id":{"pmid":["42467783"]},"status":"public","quality_controlled":"1","oa_version":"Published Version","department":[{"_id":"NiBa"}],"day":"17","researchdata_availability":"no","scopus_import":"1","language":[{"iso":"eng"}],"article_processing_charge":"Yes","OA_place":"publisher","issue":"29","has_accepted_license":"1","doi":"10.1126/sciadv.adx2011","das_tickbox":"1","month":"07","file_date_updated":"2026-08-03T09:44:40Z","PlanS_conform":"1"},{"title":"Low-noise quantum dots in ultra-shallow Ge/SiGe heterostructures for prototyping hybrid semiconducting–superconducting devices","publisher":"AIP Publishing","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2026","acknowledged_ssus":[{"_id":"M-Shop"},{"_id":"NanoFab"}],"_id":"22619","date_updated":"2026-08-03T11:08:39Z","publication_identifier":{"issn":["0003-6951"],"eissn":["1077-3118"]},"citation":{"ama":"Borovkov M, Schell YA, Sokolova D, et al. Low-noise quantum dots in ultra-shallow Ge/SiGe heterostructures for prototyping hybrid semiconducting–superconducting devices. <i>Applied Physics Letters</i>. 2026;129(3). doi:<a href=\"https://doi.org/10.1063/5.0333142\">10.1063/5.0333142</a>","chicago":"Borovkov, Maksim, Yona A Schell, Dina Sokolova, Kevin Etienne Robert Roux, Paul Falthansl-Scheinecker, Giorgio Fabris, Devashish C Shah, et al. “Low-Noise Quantum Dots in Ultra-Shallow Ge/SiGe Heterostructures for Prototyping Hybrid Semiconducting–Superconducting Devices.” <i>Applied Physics Letters</i>. AIP Publishing, 2026. <a href=\"https://doi.org/10.1063/5.0333142\">https://doi.org/10.1063/5.0333142</a>.","apa":"Borovkov, M., Schell, Y. A., Sokolova, D., Roux, K. E. R., Falthansl-Scheinecker, P., Fabris, G., … Katsaros, G. (2026). Low-noise quantum dots in ultra-shallow Ge/SiGe heterostructures for prototyping hybrid semiconducting–superconducting devices. <i>Applied Physics Letters</i>. AIP Publishing. <a href=\"https://doi.org/10.1063/5.0333142\">https://doi.org/10.1063/5.0333142</a>","ieee":"M. Borovkov <i>et al.</i>, “Low-noise quantum dots in ultra-shallow Ge/SiGe heterostructures for prototyping hybrid semiconducting–superconducting devices,” <i>Applied Physics Letters</i>, vol. 129, no. 3. AIP Publishing, 2026.","short":"M. Borovkov, Y.A. Schell, D. Sokolova, K.E.R. Roux, P. Falthansl-Scheinecker, G. Fabris, D.C. Shah, J. Saez Mollejo, R. Previdi, I. Taha, A. Genç, J. Arbiol, S. Calcaterra, A.D.C. Oliveira, D. Chrastina, G. Isella, A. Bubis, G. Katsaros, Applied Physics Letters 129 (2026).","mla":"Borovkov, Maksim, et al. “Low-Noise Quantum Dots in Ultra-Shallow Ge/SiGe Heterostructures for Prototyping Hybrid Semiconducting–Superconducting Devices.” <i>Applied Physics Letters</i>, vol. 129, no. 3, 033505, AIP Publishing, 2026, doi:<a href=\"https://doi.org/10.1063/5.0333142\">10.1063/5.0333142</a>.","ista":"Borovkov M, Schell YA, Sokolova D, Roux KER, Falthansl-Scheinecker P, Fabris G, Shah DC, Saez Mollejo J, Previdi R, Taha I, Genç A, Arbiol J, Calcaterra S, Oliveira ADC, Chrastina D, Isella G, Bubis A, Katsaros G. 2026. Low-noise quantum dots in ultra-shallow Ge/SiGe heterostructures for prototyping hybrid semiconducting–superconducting devices. Applied Physics Letters. 129(3), 033505."},"article_number":"033505","publication_status":"published","article_type":"original","abstract":[{"lang":"eng","text":"Planar germanium is currently the only semiconducting platform where high-coherence spin qubits and proximity-induced superconductivity have each been demonstrated. Recent research into spin qubits in Ge/SiGe heterostructures has focused on increasing the thickness of the SiGe capping layer, reporting improvements in the electrostatic noise levels. Meanwhile, heterostructures with thinner capping layers remain rather unexplored, despite the potential advantages for proximity-induced superconductivity. Here, we study a Ge/SiGe heterostructure with a thin SiGe cap d - 4nm and investigate its viability to host low-noise quantum dots. To keep the thermal budget compatible with superconducting layers, low-temperature oxide deposition processes were developed and implemented for the gate dielectrics. The charge noise level of the fabricated devices is estimated to be 1.8  +- 1.0 μeV/ square HZ⁠, comparable to devices fabricated on shallow heterostructures (⁠ d - 20nm⁠) with high-temperature deposited oxides. Low charge noise levels, together with the straightforward integration of superconductors, make this heterostructure an attractive platform for prototyping hybrid semiconducting–superconducting devices."}],"volume":129,"publication":"Applied Physics Letters","type":"journal_article","date_created":"2026-08-02T22:01:53Z","related_material":{"record":[{"relation":"research_data","id":"22242","status":"public"}]},"month":"07","doi":"10.1063/5.0333142","das_tickbox":"1","OA_place":"repository","issue":"3","day":"20","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2602.21363"}],"scopus_import":"1","researchdata_availability":"yes","article_processing_charge":"No","language":[{"iso":"eng"}],"status":"public","quality_controlled":"1","oa_version":"Preprint","department":[{"_id":"GeKa"},{"_id":"GradSch"},{"_id":"NanoFab"}],"OA_type":"green","oa":1,"date_published":"2026-07-20T00:00:00Z","project":[{"grant_number":"101115315","name":"Quantum bits with Kitaev Transmons","_id":"bdc2ca30-d553-11ed-ba76-cf164a5bb811"},{"_id":"34a66131-11ca-11ed-8bc3-a31681c6b03e","name":"Center for Correlated Quantum Materials and Solid State Quantum Systems: Conventional  and unconventional topological superconductors","grant_number":"F8606"},{"grant_number":"PAT 7682124","_id":"5b9e579c-ab3d-11f0-914f-88754c5b5a3f","name":"Superconducting spin qubits in planar Ge"},{"grant_number":"P36507","name":"Merging spin and superconducting qubits in planar Ge","_id":"bd8bd29e-d553-11ed-ba76-f0070d4b237a"},{"_id":"8ea8abf7-16d5-11f0-9cad-c41e56ec8bb3","name":"Realization and Manipulation of a Planar hybrid superconducting Andreev spin qubit in Germanium","grant_number":"101150858"}],"external_id":{"arxiv":["2602.21363"]},"intvolume":"       129","dataavailabilitystatement":"The data that support the findings of this study are openly available in Institute of Science and Technology repository at http://doi.org/10.15479/AT-ISTA-22242, Ref. 50.","arxiv":1,"acknowledgement":"We sincerely thank Nick van Loo, Greg Mazur, Dhananjay Joshi, and Srijit Goswami for their inputs on low-temperature HfOx deposition; Matias Urdampilleta and Daniel Jirovec for discussions; and Kristen Léonard for the careful reading of the manuscript. This research was supported by the Scientific Service Units of ISTA through resources provided by the Miba Machine Shop and the Nanofabrication facility. The authors acknowledge support from the NOMIS Foundation; the European Innovation Council Pathfinder Grant No. 101115315 (QuKiT); the FWF Projects with DOI:10.55776/F86, DOI:10.55776/PAT7682124, and DOI:10.55776/P36507; and the HE-MSCA-PF project with DOI:10.3030/101150858. ICN2 is supported by the Severo Ochoa Program from Spanish MCIN/AEI (Grant No.: CEX2021-001214-S) and is funded by the CERCA Program/Generalitat de Catalunya. ICN2 acknowledges funding from Generalitat de Catalunya (No. 2021SGR00457). We acknowledge support from the CSIC Interdisciplinary Thematic Platform (PTI+) on Quantum Technologies (PTI-QTEP+).","supplementarymaterial":"yes","corr_author":"1","author":[{"full_name":"Borovkov, Maksim","last_name":"Borovkov","first_name":"Maksim","id":"1fd0975f-8b61-11ed-b69e-d149334f28c5"},{"id":"fe39122d-06bb-11ec-a33b-9e22b40e40a5","full_name":"Schell, Yona A","last_name":"Schell","first_name":"Yona A"},{"full_name":"Sokolova, Dina","last_name":"Sokolova","first_name":"Dina","id":"2d2d62f8-72f0-11ef-b75a-8ec3e8a60032"},{"id":"53f93ea2-803f-11ed-ab7e-b283135794ef","last_name":"Roux","full_name":"Roux, Kevin Etienne Robert","first_name":"Kevin Etienne Robert"},{"first_name":"Paul","last_name":"Falthansl-Scheinecker","full_name":"Falthansl-Scheinecker, Paul","id":"85b43b21-15b2-11ec-abd3-e2c252cc2285"},{"full_name":"Fabris, Giorgio","last_name":"Fabris","first_name":"Giorgio","id":"298cf6f3-1ff6-11ee-9fa6-d94cfa0b3352"},{"id":"de191434-4e7e-11ef-bf4b-9a056fc19fc3","first_name":"Devashish C","orcid":"0009-0007-5829-7707","full_name":"Shah, Devashish C","last_name":"Shah"},{"id":"e0390f72-f6e0-11ea-865d-862393336714","first_name":"Jaime","last_name":"Saez Mollejo","full_name":"Saez Mollejo, Jaime"},{"full_name":"Previdi, Rodolfo","last_name":"Previdi","first_name":"Rodolfo","id":"bc4ea1dc-00ce-11ec-8a4e-b325ca8b9876"},{"first_name":"Inas","last_name":"Taha","full_name":"Taha, Inas"},{"first_name":"Aziz","full_name":"Genç, Aziz","last_name":"Genç"},{"last_name":"Arbiol","full_name":"Arbiol, Jordi","first_name":"Jordi"},{"full_name":"Calcaterra, Stefano","last_name":"Calcaterra","first_name":"Stefano"},{"full_name":"Oliveira, Afonso De Cerdeira","last_name":"Oliveira","first_name":"Afonso De Cerdeira"},{"first_name":"Daniel","last_name":"Chrastina","full_name":"Chrastina, Daniel"},{"first_name":"Giovanni","full_name":"Isella, Giovanni","last_name":"Isella"},{"full_name":"Bubis, Anton","last_name":"Bubis","first_name":"Anton","id":"1f6212b5-f795-11ec-9c0c-de4780302890"},{"id":"38DB5788-F248-11E8-B48F-1D18A9856A87","first_name":"Georgios","orcid":"0000-0001-8342-202X","full_name":"Katsaros, Georgios","last_name":"Katsaros"}]},{"language":[{"iso":"eng"}],"article_processing_charge":"Yes","scopus_import":"1","researchdata_availability":"no","day":"22","has_accepted_license":"1","OA_place":"publisher","das_tickbox":"0","doi":"10.1017/fms.2026.10259","PlanS_conform":"1","file_date_updated":"2026-08-03T12:12:03Z","month":"07","author":[{"first_name":"Timothy D","orcid":"0000-0002-8314-0177","last_name":"Browning","full_name":"Browning, Timothy D","id":"35827D50-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Glas","full_name":"Glas, Jakob","first_name":"Jakob","id":"d6423cba-dc74-11ea-a0a7-ee61689ff5fb"},{"orcid":"0000-0002-0704-7026","full_name":"Wang, Victor","last_name":"Wang","first_name":"Victor","id":"76096395-aea4-11ed-a680-ab8ebbd3f1b9"}],"supplementarymaterial":"no","acknowledgement":"While working on this paper the first two authors were supported by FWF grant (DOI 10.55776/P36278) and the third author was supported by the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 101034413, and by the National Science and Technology Council Project Grant 114-2115-M-001-010-MY2.","corr_author":"1","arxiv":1,"intvolume":"        14","external_id":{"arxiv":["2402.07146"]},"project":[{"grant_number":"P36278","name":"Rational curves via function field analytic number theory","_id":"bd8a4fdc-d553-11ed-ba76-80a0167441a3"},{"grant_number":"101034413","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c","call_identifier":"H2020","name":"IST-BRIDGE: International postdoctoral program"}],"date_published":"2026-07-22T00:00:00Z","oa":1,"OA_type":"gold","oa_version":"Published Version","department":[{"_id":"TiBr"},{"_id":"GradSch"}],"quality_controlled":"1","status":"public","citation":{"mla":"Browning, Timothy D., et al. “Sums of Three Cubes over a Function Field.” <i>Forum of Mathematics Sigma</i>, vol. 14, e112, Cambridge University Press, 2026, doi:<a href=\"https://doi.org/10.1017/fms.2026.10259\">10.1017/fms.2026.10259</a>.","ista":"Browning TD, Glas J, Wang V. 2026. Sums of three cubes over a function field. Forum of Mathematics Sigma. 14, e112.","short":"T.D. Browning, J. Glas, V. Wang, Forum of Mathematics Sigma 14 (2026).","ieee":"T. D. Browning, J. Glas, and V. Wang, “Sums of three cubes over a function field,” <i>Forum of Mathematics Sigma</i>, vol. 14. Cambridge University Press, 2026.","apa":"Browning, T. D., Glas, J., &#38; Wang, V. (2026). Sums of three cubes over a function field. <i>Forum of Mathematics Sigma</i>. Cambridge University Press. <a href=\"https://doi.org/10.1017/fms.2026.10259\">https://doi.org/10.1017/fms.2026.10259</a>","chicago":"Browning, Timothy D, Jakob Glas, and Victor Wang. “Sums of Three Cubes over a Function Field.” <i>Forum of Mathematics Sigma</i>. Cambridge University Press, 2026. <a href=\"https://doi.org/10.1017/fms.2026.10259\">https://doi.org/10.1017/fms.2026.10259</a>.","ama":"Browning TD, Glas J, Wang V. Sums of three cubes over a function field. <i>Forum of Mathematics Sigma</i>. 2026;14. doi:<a href=\"https://doi.org/10.1017/fms.2026.10259\">10.1017/fms.2026.10259</a>"},"publication_identifier":{"eissn":["2050-5094"]},"date_updated":"2026-08-03T12:13:59Z","_id":"22618","DOAJ_listed":"1","year":"2026","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"Cambridge University Press","title":"Sums of three cubes over a function field","ec_funded":1,"file":[{"creator":"dernst","date_created":"2026-08-03T12:12:03Z","date_updated":"2026-08-03T12:12:03Z","content_type":"application/pdf","access_level":"open_access","success":1,"relation":"main_file","file_size":810718,"file_name":"2026_ForumMathematics_Browning.pdf","checksum":"e92a762e03f832bdca8c106a9a88ef9b","file_id":"22636"}],"ddc":["500"],"tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"date_created":"2026-08-02T22:01:52Z","type":"journal_article","publication":"Forum of Mathematics Sigma","volume":14,"abstract":[{"text":"We use a function field version of the circle method to prove that a positive proportion of elements in 𝔽𝑞⁡[𝑡] are representable as a sum of three cubes of minimal degree from 𝔽𝑞⁡[𝑡], assuming a suitable form of the Ratios Conjecture and that char⁡(𝔽𝑞) >3. The analogue of this conjecture for quadratic Dirichlet L-functions is known for large fixed q, via recent developments in homological stability.","lang":"eng"}],"article_type":"original","publication_status":"published","article_number":"e112"},{"author":[{"id":"1fd0975f-8b61-11ed-b69e-d149334f28c5","full_name":"Borovkov, Maksim","last_name":"Borovkov","first_name":"Maksim"}],"corr_author":"1","oa_version":"Published Version","department":[{"_id":"GradSch"},{"_id":"GeKa"}],"status":"public","project":[{"name":"Quantum bits with Kitaev Transmons","_id":"bdc2ca30-d553-11ed-ba76-cf164a5bb811","grant_number":"101115315"},{"grant_number":"F8606","_id":"34a66131-11ca-11ed-8bc3-a31681c6b03e","name":"Center for Correlated Quantum Materials and Solid State Quantum Systems: Conventional  and unconventional topological superconductors"},{"name":"Merging spin and superconducting qubits in planar Ge","_id":"bd8bd29e-d553-11ed-ba76-f0070d4b237a","grant_number":"P36507"},{"grant_number":"101150858","name":"Realization and Manipulation of a Planar hybrid superconducting Andreev spin qubit in Germanium","_id":"8ea8abf7-16d5-11f0-9cad-c41e56ec8bb3"},{"name":"Superconducting spin qubits in planar Ge","_id":"5b9e579c-ab3d-11f0-914f-88754c5b5a3f","grant_number":"PAT 7682124"}],"date_published":"2026-07-04T00:00:00Z","contributor":[{"last_name":"Borovkov","contributor_type":"contact_person","first_name":"Maksim","id":"1fd0975f-8b61-11ed-b69e-d149334f28c5"}],"oa":1,"has_accepted_license":"1","OA_place":"repository","article_processing_charge":"No","day":"04","file_date_updated":"2026-07-04T17:28:49Z","month":"07","doi":"10.15479/AT-ISTA-22242","date_created":"2026-07-04T17:32:27Z","type":"research_data","file":[{"checksum":"2a1ea297e01a7a202a6b144d69a46eef","file_name":"noise_paper_public_deposit.zip","file_id":"22243","access_level":"open_access","file_size":3082596099,"success":1,"relation":"main_file","date_updated":"2026-07-04T17:28:49Z","date_created":"2026-07-04T17:28:49Z","content_type":"application/x-zip-compressed","creator":"mborovko"}],"ddc":["530"],"tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"related_material":{"link":[{"relation":"research_data","url":"https://github.com/ISTA-Nanoelectronics/noise_paper_public"}],"record":[{"id":"22619","relation":"used_in_publication","status":"public"}]},"abstract":[{"text":"This deposit contains the data and analysis code accompanying the publication \"Low-Noise Quantum Dots in Ultra-Shallow Ge/SiGe Heterostructures for Prototyping Hybrid Semiconducting–Superconducting Devices\" (Borovkov et al.). The deposit includes the raw transport and current-noise measurements of three gate-defined quantum-dot devices as QCodes SQLite databases, the master table of the charge-noise (flank-method) analysis with the pointers linking every analyzed PSD trace to the raw data, the toy-model noise simulation datasets behind the supplementary figures, the archived analysis figures (PSD fits and lever-arm extractions), and the Python code reproducing the full analysis and all figures. The code is also maintained at https://github.com/ISTA-Nanoelectronics/noise_paper_public; instructions are provided in the README files.","lang":"eng"}],"doi_confirm":"1","date_updated":"2026-08-03T11:08:38Z","acknowledged_ssus":[{"_id":"M-Shop"},{"_id":"NanoFab"}],"_id":"22242","citation":{"ista":"Borovkov M. 2026. Low-Noise Quantum Dots in Ultra-Shallow Ge/SiGe Heterostructures for Prototyping Hybrid Semiconducting-Superconducting Devices, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT-ISTA-22242\">10.15479/AT-ISTA-22242</a>.","mla":"Borovkov, Maksim. <i>Low-Noise Quantum Dots in Ultra-Shallow Ge/SiGe Heterostructures for Prototyping Hybrid Semiconducting-Superconducting Devices</i>. Institute of Science and Technology Austria, 2026, doi:<a href=\"https://doi.org/10.15479/AT-ISTA-22242\">10.15479/AT-ISTA-22242</a>.","short":"M. Borovkov, (2026).","ieee":"M. Borovkov, “Low-Noise Quantum Dots in Ultra-Shallow Ge/SiGe Heterostructures for Prototyping Hybrid Semiconducting-Superconducting Devices.” Institute of Science and Technology Austria, 2026.","apa":"Borovkov, M. (2026). Low-Noise Quantum Dots in Ultra-Shallow Ge/SiGe Heterostructures for Prototyping Hybrid Semiconducting-Superconducting Devices. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT-ISTA-22242\">https://doi.org/10.15479/AT-ISTA-22242</a>","chicago":"Borovkov, Maksim. “Low-Noise Quantum Dots in Ultra-Shallow Ge/SiGe Heterostructures for Prototyping Hybrid Semiconducting-Superconducting Devices.” Institute of Science and Technology Austria, 2026. <a href=\"https://doi.org/10.15479/AT-ISTA-22242\">https://doi.org/10.15479/AT-ISTA-22242</a>.","ama":"Borovkov M. Low-Noise Quantum Dots in Ultra-Shallow Ge/SiGe Heterostructures for Prototyping Hybrid Semiconducting-Superconducting Devices. 2026. doi:<a href=\"https://doi.org/10.15479/AT-ISTA-22242\">10.15479/AT-ISTA-22242</a>"},"publisher":"Institute of Science and Technology Austria","user_id":"68b8ca59-c5b3-11ee-8790-cd641c68093d","title":"Low-Noise Quantum Dots in Ultra-Shallow Ge/SiGe Heterostructures for Prototyping Hybrid Semiconducting-Superconducting Devices","year":"2026"},{"ddc":["550"],"tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"date_created":"2026-07-27T12:30:23Z","type":"journal_article","publication":"Geophysical Research Letters","volume":53,"abstract":[{"text":"Transpiration (T) connects water, energy, and carbon cycles within ecosystems. While T has often been reported to increase with soil warming, underlying reasons remain poorly understood. Here, using a mechanistic ecohydrological model, T&amp;C‐BG, we simulated T responses to soil warming at 30 sites spanning various biomes and climates. Consistent with observations, the numerical model reproduces negative, insignificant, and predominantly positive T responses under soil warming. Numerical results show that soil warming generally increases T for sites with a small Bowen ratio. The main mechanisms leading to positive T responses to soil warming are complex changes in energy partitioning with modifications of canopy surface temperature and aerodynamic, stomatal, and leaf boundary layer conductance. However, soil warming can also affect phenology, which might result in either increased or decreased T. Our findings shed light on how T changes with warmer soil and help interpret outcomes of warming experiments.","lang":"eng"}],"publication_status":"published","article_type":"letter_note","article_number":"e2025GL120046","citation":{"ama":"Luo Z, Ren J, Zhuang Q, Fatichi S. Transpiration changes with soil warming: Insights from a mechanistic model. <i>Geophysical Research Letters</i>. 2026;53(8). doi:<a href=\"https://doi.org/10.1029/2025gl120046\">10.1029/2025gl120046</a>","apa":"Luo, Z., Ren, J., Zhuang, Q., &#38; Fatichi, S. (2026). Transpiration changes with soil warming: Insights from a mechanistic model. <i>Geophysical Research Letters</i>. American Geophysical Union. <a href=\"https://doi.org/10.1029/2025gl120046\">https://doi.org/10.1029/2025gl120046</a>","chicago":"Luo, Zhaoyang, Jianning Ren, Qi Zhuang, and Simone Fatichi. “Transpiration Changes with Soil Warming: Insights from a Mechanistic Model.” <i>Geophysical Research Letters</i>. American Geophysical Union, 2026. <a href=\"https://doi.org/10.1029/2025gl120046\">https://doi.org/10.1029/2025gl120046</a>.","mla":"Luo, Zhaoyang, et al. “Transpiration Changes with Soil Warming: Insights from a Mechanistic Model.” <i>Geophysical Research Letters</i>, vol. 53, no. 8, e2025GL120046, American Geophysical Union, 2026, doi:<a href=\"https://doi.org/10.1029/2025gl120046\">10.1029/2025gl120046</a>.","ista":"Luo Z, Ren J, Zhuang Q, Fatichi S. 2026. Transpiration changes with soil warming: Insights from a mechanistic model. Geophysical Research Letters. 53(8), e2025GL120046.","ieee":"Z. Luo, J. Ren, Q. Zhuang, and S. Fatichi, “Transpiration changes with soil warming: Insights from a mechanistic model,” <i>Geophysical Research Letters</i>, vol. 53, no. 8. American Geophysical Union, 2026.","short":"Z. Luo, J. Ren, Q. Zhuang, S. Fatichi, Geophysical Research Letters 53 (2026)."},"publication_identifier":{"eissn":["1944-8007"],"issn":["0094-8276"]},"date_updated":"2026-08-03T13:37:39Z","_id":"22449","DOAJ_listed":"1","year":"2026","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"American Geophysical Union","title":"Transpiration changes with soil warming: Insights from a mechanistic model","author":[{"first_name":"Zhaoyang","last_name":"Luo","full_name":"Luo, Zhaoyang"},{"last_name":"Ren","full_name":"Ren, Jianning","first_name":"Jianning"},{"full_name":"Zhuang, Qi","last_name":"Zhuang","first_name":"Qi"},{"id":"cf8e546b-a9b0-11f0-a43b-aa89ed1b56d6","first_name":"Simone","full_name":"Fatichi, Simone","last_name":"Fatichi"}],"extern":"1","intvolume":"        53","date_published":"2026-04-28T00:00:00Z","OA_type":"gold","oa":1,"oa_version":"Published Version","quality_controlled":"1","status":"public","article_processing_charge":"No","language":[{"iso":"eng"}],"scopus_import":"1","main_file_link":[{"url":" https://doi.org/10.1029/2025GL120046","open_access":"1"}],"day":"28","has_accepted_license":"1","issue":"8","OA_place":"publisher","das_tickbox":"1","doi":"10.1029/2025gl120046","month":"04"},{"OA_type":"gold","oa":1,"external_id":{"pmid":["41812348"]},"date_published":"2026-03-01T00:00:00Z","oa_version":"Published Version","quality_controlled":"1","status":"public","extern":"1","author":[{"full_name":"Chi, Dengkai","last_name":"Chi","first_name":"Dengkai"},{"first_name":"Gabriele","last_name":"Manoli","full_name":"Manoli, Gabriele"},{"first_name":"Jun","full_name":"Yang, Jun","last_name":"Yang"},{"full_name":"Richards, Daniel","last_name":"Richards","first_name":"Daniel"},{"last_name":"Hahs","full_name":"Hahs, Amy","first_name":"Amy"},{"first_name":"Brenda","full_name":"Lin, Brenda","last_name":"Lin"},{"full_name":"McDonnell, Mark J.","last_name":"McDonnell","first_name":"Mark J."},{"full_name":"Zhang, Ye","last_name":"Zhang","first_name":"Ye"},{"first_name":"Yue","last_name":"Zhu","full_name":"Zhu, Yue"},{"first_name":"Yeshan","last_name":"Qiu","full_name":"Qiu, Yeshan"},{"full_name":"Wang, Jing","last_name":"Wang","first_name":"Jing"},{"first_name":"Xing","full_name":"Zheng, Xing","last_name":"Zheng"},{"last_name":"Burlando","full_name":"Burlando, Paolo","first_name":"Paolo"},{"id":"cf8e546b-a9b0-11f0-a43b-aa89ed1b56d6","first_name":"Simone","full_name":"Fatichi, Simone","last_name":"Fatichi"},{"last_name":"Tan","full_name":"Tan, Puay Yok","first_name":"Puay Yok"}],"intvolume":"       209","doi":"10.1016/j.envint.2026.110188","das_tickbox":"1","month":"03","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1016/j.envint.2026.110188"}],"day":"01","article_processing_charge":"No","language":[{"iso":"eng"}],"scopus_import":"1","OA_place":"publisher","has_accepted_license":"1","volume":209,"keyword":["Aggregation","Fragmentation","Green space exposure","Green space morphology","Green space structure","Landscape metrics","Shape complexity"],"publication":"Environment International","article_type":"original","publication_status":"published","article_number":"110188","abstract":[{"lang":"eng","text":"Background:\r\nThe spatial distribution of tree canopies influences ecological functions and residents’ exposure to green spaces. Although several studies have examined green space configuration at neighborhood scales, evidence on tree canopy configuration at the municipal scale, an operational unit for urban planning, remains limited.\r\nMethods:\r\nWe conducted a nationwide ecological study of 2,136 Swiss municipalities. Tree canopy coverage (PLAND), aggregation (AI, reflecting how tightly green patches are grouped together), patch density (PD, a measure of fragmentation), and area-weighted mean shape index (SHAPE_AM, a measure of shape complexity) were derived from 1-m canopy maps within municipality-specific populated areas. Natural-cause, cardiovascular, and cancer mortality (2017–2019) were obtained from the Swiss National Cohort. Fully adjusted negative binomial regression models estimated associations between canopy metric and mortality for each IQR increase in the metrics.\r\nResults:\r\nHolding configuration constant, each IQR increase in canopy coverage (∼18%) was associated with a 3.6% [B: −0.036; 95% CI: −0.078 – 0.005] reduction in cardiovascular mortality. Higher aggregation corresponded to a 4.3% [B: 0.043; 95% CI: 0.026–0.061], an 8.9% [B: 0.089; 95% CI: 0.059–0.119], and a 2.1% [B: 0.021; 95% CI: 0–0.042] higher number of natural-cause, cardiovascular, and cancer deaths respectively. Higher fragmentation was associated with a 3.3% [B: 0.033; 95% CI: 0.016–0.050], a 4.9% [B: 0.049; 95% CI: 0.020–0.078], and a 2.2% [B: 0.022; 95% CI: 0.001–0.043] increase in these causes respectively. No meaningful associations were observed between shape complexity and any mortality outcomes. Associations for aggregation and fragmentation were generally stronger in highly urbanized municipalities.\r\nConclusions:\r\nAt the municipal scale, mortality was lower where tree canopy was distributed across several moderately sized, spatially balanced patches rather than highly aggregated or highly fragmented structures. These findings suggest that urban greening strategies should optimize its spatial configuration to maximize health benefits."}],"ddc":["550"],"tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"type":"journal_article","date_created":"2026-07-27T12:30:23Z","year":"2026","DOAJ_listed":"1","publisher":"Elsevier","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"Tree canopy configuration and Swiss adult mortality at the municipal level: A nationwide ecological study","publication_identifier":{"eissn":["1873-6750"],"issn":["0160-4120"]},"citation":{"ieee":"D. Chi <i>et al.</i>, “Tree canopy configuration and Swiss adult mortality at the municipal level: A nationwide ecological study,” <i>Environment International</i>, vol. 209. Elsevier, 2026.","short":"D. Chi, G. Manoli, J. Yang, D. Richards, A. Hahs, B. Lin, M.J. McDonnell, Y. Zhang, Y. Zhu, Y. Qiu, J. Wang, X. Zheng, P. Burlando, S. Fatichi, P.Y. Tan, Environment International 209 (2026).","mla":"Chi, Dengkai, et al. “Tree Canopy Configuration and Swiss Adult Mortality at the Municipal Level: A Nationwide Ecological Study.” <i>Environment International</i>, vol. 209, 110188, Elsevier, 2026, doi:<a href=\"https://doi.org/10.1016/j.envint.2026.110188\">10.1016/j.envint.2026.110188</a>.","ista":"Chi D, Manoli G, Yang J, Richards D, Hahs A, Lin B, McDonnell MJ, Zhang Y, Zhu Y, Qiu Y, Wang J, Zheng X, Burlando P, Fatichi S, Tan PY. 2026. Tree canopy configuration and Swiss adult mortality at the municipal level: A nationwide ecological study. Environment International. 209, 110188.","chicago":"Chi, Dengkai, Gabriele Manoli, Jun Yang, Daniel Richards, Amy Hahs, Brenda Lin, Mark J. McDonnell, et al. “Tree Canopy Configuration and Swiss Adult Mortality at the Municipal Level: A Nationwide Ecological Study.” <i>Environment International</i>. Elsevier, 2026. <a href=\"https://doi.org/10.1016/j.envint.2026.110188\">https://doi.org/10.1016/j.envint.2026.110188</a>.","apa":"Chi, D., Manoli, G., Yang, J., Richards, D., Hahs, A., Lin, B., … Tan, P. Y. (2026). Tree canopy configuration and Swiss adult mortality at the municipal level: A nationwide ecological study. <i>Environment International</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.envint.2026.110188\">https://doi.org/10.1016/j.envint.2026.110188</a>","ama":"Chi D, Manoli G, Yang J, et al. Tree canopy configuration and Swiss adult mortality at the municipal level: A nationwide ecological study. <i>Environment International</i>. 2026;209. doi:<a href=\"https://doi.org/10.1016/j.envint.2026.110188\">10.1016/j.envint.2026.110188</a>"},"_id":"22480","date_updated":"2026-08-03T14:17:29Z","pmid":1},{"file":[{"access_level":"open_access","file_size":6564594,"relation":"main_file","success":1,"checksum":"063314ae5ac4225ebd4436aa8707d113","file_name":"2026_JACS_Lee.pdf","file_id":"22646","creator":"dernst","date_updated":"2026-08-04T06:40:17Z","date_created":"2026-08-04T06:40:17Z","content_type":"application/pdf"}],"ddc":["540"],"tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"date_created":"2026-08-04T06:29:31Z","type":"journal_article","publication":"Journal of the AmericanChemical Society","volume":148,"abstract":[{"lang":"eng","text":"Nanocrystal superlattices are commonly formed by changing concentration, solvent conditions, or particle surface chemistry. Although effective, these approaches alter multiple contributions to the interparticle potential simultaneously, making it difficult to isolate the interactions responsible for ordering or to control assembly in chemically complex environments. Here, we show that oligomeric species present in a nanocrystal reaction medium drive superlattice formation through a depletion mechanism. Using PbTe nanocrystals as a model system, we identify Pb–oleate oligomers in the crude reaction mixture, characterize their solution structure, and quantify their contribution to the interparticle potential, establishing depletion as the dominant short-range interaction governing spontaneous body-centered cubic superlattice formation. We then confirm the depletion origin of ordering by showing that varying depletant concentration predictably shifts the order–disorder boundary and produces a thermally reversible transition between dispersed and ordered states ─ behavior that is inconsistent with van der Waals or ligand-mediated mechanisms but is a direct consequence of depletion control. Having established and validated the mechanism, we demonstrate that the same depletion framework can be deliberately activated in purified dispersions and transferred across nanocrystal systems of different composition and shape, including anisotropic and binary assemblies. These results establish precursor-derived depletion as a general and chemically grounded mechanism for nanocrystal superlattice formation, and show that collective ordering can be programmed through the surrounding medium rather than through particle surface modification."}],"publication_status":"published","article_type":"original","citation":{"ama":"Lee S, Balazs D, Rayaroth Puthiyaveettil A, et al. Reaction medium asan architect of nanocrystal superlattices. <i>Journal of the AmericanChemical Society</i>. 2026;148(29):31245-31252. doi:<a href=\"https://doi.org/10.1021/jacs.6c07859\">10.1021/jacs.6c07859</a>","short":"S. Lee, D. Balazs, A. Rayaroth Puthiyaveettil, S. Horta, C.P. Goodrich, M. Engel, I. Cherniukh, M. Ibáñez, Journal of the AmericanChemical Society 148 (2026) 31245–31252.","ieee":"S. Lee <i>et al.</i>, “Reaction medium asan architect of nanocrystal superlattices,” <i>Journal of the AmericanChemical Society</i>, vol. 148, no. 29. American Chemical Society, pp. 31245–31252, 2026.","mla":"Lee, Seungho, et al. “Reaction Medium Asan Architect of Nanocrystal Superlattices.” <i>Journal of the AmericanChemical Society</i>, vol. 148, no. 29, American Chemical Society, 2026, pp. 31245–52, doi:<a href=\"https://doi.org/10.1021/jacs.6c07859\">10.1021/jacs.6c07859</a>.","ista":"Lee S, Balazs D, Rayaroth Puthiyaveettil A, Horta S, Goodrich CP, Engel M, Cherniukh I, Ibáñez M. 2026. Reaction medium asan architect of nanocrystal superlattices. Journal of the AmericanChemical Society. 148(29), 31245–31252.","chicago":"Lee, Seungho, Daniel Balazs, Aiswarya Rayaroth Puthiyaveettil, Sharona Horta, Carl Peter Goodrich, Michael Engel, Ihor Cherniukh, and Maria Ibáñez. “Reaction Medium Asan Architect of Nanocrystal Superlattices.” <i>Journal of the AmericanChemical Society</i>. American Chemical Society, 2026. <a href=\"https://doi.org/10.1021/jacs.6c07859\">https://doi.org/10.1021/jacs.6c07859</a>.","apa":"Lee, S., Balazs, D., Rayaroth Puthiyaveettil, A., Horta, S., Goodrich, C. P., Engel, M., … Ibáñez, M. (2026). Reaction medium asan architect of nanocrystal superlattices. <i>Journal of the AmericanChemical Society</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/jacs.6c07859\">https://doi.org/10.1021/jacs.6c07859</a>"},"publication_identifier":{"eissn":["1520-5126"],"issn":["0002-7863"]},"pmid":1,"date_updated":"2026-08-04T06:47:13Z","_id":"22645","acknowledged_ssus":[{"_id":"EM-Fac"},{"_id":"NMR"},{"_id":"LifeSc"}],"year":"2026","publisher":"American Chemical Society","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"Reaction medium asan architect of nanocrystal superlattices","author":[{"id":"BB243B88-D767-11E9-B658-BC13E6697425","orcid":"0000-0002-6962-8598","full_name":"Lee, Seungho","last_name":"Lee","first_name":"Seungho"},{"first_name":"Daniel","full_name":"Balazs, Daniel","last_name":"Balazs","orcid":"0000-0001-7597-043X","id":"302BADF6-85FC-11EA-9E3B-B9493DDC885E"},{"id":"8aceb01b-8972-11ed-ae7b-d5fe53775add","first_name":"Aiswarya","full_name":"Rayaroth Puthiyaveettil, Aiswarya","last_name":"Rayaroth Puthiyaveettil"},{"first_name":"Sharona","full_name":"Horta, Sharona","last_name":"Horta","id":"03a7e858-01b1-11ec-8b71-99ae6c4a05bc"},{"full_name":"Goodrich, Carl Peter","last_name":"Goodrich","orcid":"0000-0002-1307-5074","first_name":"Carl Peter","id":"EB352CD2-F68A-11E9-89C5-A432E6697425"},{"full_name":"Engel, Michael","last_name":"Engel","first_name":"Michael"},{"full_name":"Cherniukh, Ihor","last_name":"Cherniukh","first_name":"Ihor","id":"d03b62b2-5976-11ef-a8d7-9525504b7895"},{"id":"43C61214-F248-11E8-B48F-1D18A9856A87","first_name":"Maria","full_name":"Ibáñez, Maria","last_name":"Ibáñez","orcid":"0000-0001-5013-2843"}],"acknowledgement":"ISTA and the Werner Siemens Foundation financially supported this work. The Scientific Service Units (SSU) of ISTA supported this research through resources provided by the Electron Microscopy Facility (EMF), NMR Facility, and the Lab Support Facility (LSF). M.E. acknowledges financial support from Deutsche Forschungsgemeinschaft through Collaborative Research Centre 1411. We thank Dr. Tommaso Constanzo and Tobias Kleinhanns for assistance with high-quality electron microscope image acquisition, Dr. Jeonghyun Park for providing NCs, Dr. Mariano Calcabrini for assistance with the NMR study, and Prof. Jonathan De Roo for fruitful discussions. This work benefited from the use of the SasView application, originally developed under NSF award DMR-0520547. SasView contains code developed with funding from the European Union’s Horizon 2020 research and innovation program under the SINE2020 project, grant agreement No. 654000.","corr_author":"1","supplementarymaterial":"yes","page":"31245-31252","intvolume":"       148","project":[{"name":"HighTE: The Werner Siemens Laboratory for the High Throughput Discovery of Semiconductors for Waste Heat Recovery","_id":"9B8F7476-BA93-11EA-9121-9846C619BF3A"}],"external_id":{"pmid":["42532904"]},"date_published":"2026-07-15T00:00:00Z","oa":1,"OA_type":"hybrid","department":[{"_id":"MaIb"},{"_id":"LifeSc"},{"_id":"GradSch"},{"_id":"CaGo"}],"oa_version":"Published Version","quality_controlled":"1","status":"public","article_processing_charge":"Yes (via OA deal)","language":[{"iso":"eng"}],"researchdata_availability":"no","scopus_import":"1","day":"15","has_accepted_license":"1","issue":"29","OA_place":"publisher","das_tickbox":"0","doi":"10.1021/jacs.6c07859","PlanS_conform":"1","file_date_updated":"2026-08-04T06:40:17Z","month":"07"},{"department":[{"_id":"OnHo"},{"_id":"GradSch"}],"oa_version":"Published Version","quality_controlled":"1","status":"public","OA_type":"hybrid","oa":1,"project":[{"grant_number":"101087907","_id":"bdb2a702-d553-11ed-ba76-f12e3e5a3bc6","name":"A quantum hybrid of atoms and milligram-scale pendulums: towards gravitational quantum mechanics"}],"external_id":{"arxiv":["2512.14528"]},"date_published":"2026-08-03T00:00:00Z","dataavailabilitystatement":"There are no publicly available research data or software\r\nsupporting this manuscript. Requests for further information\r\nor data should be sent to the authors.","intvolume":"       114","arxiv":1,"author":[{"first_name":"Edward-Fulbright","last_name":"Gheorghita","full_name":"Gheorghita, Edward-Fulbright","id":"e664a051-133f-11ed-8f02-a05999ad0822"},{"id":"133F200A-B015-11E9-AD41-0EDAE5697425","first_name":"Sebastian","orcid":"0000-0002-5869-1604","full_name":"Wald, Sebastian","last_name":"Wald"},{"id":"ef9c50a4-5335-11ef-8b9b-8ce03e6380ed","first_name":"Andrea","full_name":"Pupić, Andrea","last_name":"Pupić"},{"last_name":"Hosten","full_name":"Hosten, Onur","orcid":"0000-0002-2031-204X","first_name":"Onur","id":"4C02D85E-F248-11E8-B48F-1D18A9856A87"}],"corr_author":"1","supplementarymaterial":"yes","acknowledgement":"The authors thank Vyacheslav Li for his earlier contributions to the development of the setup utilized in this work.\r\nThis work was supported by the Institute of Science and Technology Austria (ISTA); E.G. was supported by the European Research Council under Grant No. 101087907 (ERC CoG\r\nQuHAMP).","month":"08","PlanS_conform":"1","file_date_updated":"2026-08-04T06:03:14Z","doi":"10.1103/71f2-sq4p","das_tickbox":"1","issue":"2","OA_place":"publisher","has_accepted_license":"1","day":"03","article_processing_charge":"Yes (via OA deal)","language":[{"iso":"eng"}],"scopus_import":"1","researchdata_availability":"upon request","article_type":"original","publication_status":"published","article_number":"023302","abstract":[{"text":"Continuously operating atom-light interfaces represent a key prerequisite for steady-state quantum sensors and efficient quantum processors. Here, we demonstrate continuous accumulation of sub-Doppler-cooled atoms in a shallow intracavity dipole trap, realizing this regime. The key ingredient is a light-shift manipulation that creates spatially varying cooling parameters, enabling efficient capture and accumulation of atoms within a cavity mode. Demonstrated with rubidium atoms, a continuous flux from a source cell is funneled through the magneto-optical trap into the cavity mode, where the atoms are cooled and maintained below 10µK in steady state without time-sequenced operation. We characterize the resulting continuously maintained ensemble of millions of atoms and its collective coupling to the cavity field, establishing a route toward continuously operated cavity-QED systems and long-duration atomic and hybrid quantum sensors.","lang":"eng"}],"volume":114,"publication":"Physical Review A","type":"journal_article","date_created":"2026-08-04T05:58:23Z","file":[{"success":1,"relation":"main_file","file_size":959463,"access_level":"open_access","file_id":"22643","file_name":"2026_PhysicalReviewA_Gheorghita.pdf","checksum":"fdecc394b734b56e1b3b151a816bbe14","creator":"dernst","content_type":"application/pdf","date_created":"2026-08-04T06:03:14Z","date_updated":"2026-08-04T06:03:14Z"}],"ddc":["530"],"tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"American Physical Society","title":"Continuous accumulation of cold atoms in an optical cavity","year":"2026","_id":"22642","date_updated":"2026-08-04T06:07:20Z","publication_identifier":{"eissn":["2469-9934"],"issn":["2469-9926"]},"citation":{"ama":"Gheorghita E-F, Wald S, Pupić A, Hosten O. Continuous accumulation of cold atoms in an optical cavity. <i>Physical Review A</i>. 2026;114(2). doi:<a href=\"https://doi.org/10.1103/71f2-sq4p\">10.1103/71f2-sq4p</a>","short":"E.-F. Gheorghita, S. Wald, A. Pupić, O. Hosten, Physical Review A 114 (2026).","ieee":"E.-F. Gheorghita, S. Wald, A. Pupić, and O. Hosten, “Continuous accumulation of cold atoms in an optical cavity,” <i>Physical Review A</i>, vol. 114, no. 2. American Physical Society, 2026.","ista":"Gheorghita E-F, Wald S, Pupić A, Hosten O. 2026. Continuous accumulation of cold atoms in an optical cavity. Physical Review A. 114(2), 023302.","mla":"Gheorghita, Edward-Fulbright, et al. “Continuous Accumulation of Cold Atoms in an Optical Cavity.” <i>Physical Review A</i>, vol. 114, no. 2, 023302, American Physical Society, 2026, doi:<a href=\"https://doi.org/10.1103/71f2-sq4p\">10.1103/71f2-sq4p</a>.","chicago":"Gheorghita, Edward-Fulbright, Sebastian Wald, Andrea Pupić, and Onur Hosten. “Continuous Accumulation of Cold Atoms in an Optical Cavity.” <i>Physical Review A</i>. American Physical Society, 2026. <a href=\"https://doi.org/10.1103/71f2-sq4p\">https://doi.org/10.1103/71f2-sq4p</a>.","apa":"Gheorghita, E.-F., Wald, S., Pupić, A., &#38; Hosten, O. (2026). Continuous accumulation of cold atoms in an optical cavity. <i>Physical Review A</i>. American Physical Society. <a href=\"https://doi.org/10.1103/71f2-sq4p\">https://doi.org/10.1103/71f2-sq4p</a>"}},{"OA_place":"publisher","main_file_link":[{"url":"https://doi.org/10.1111/nph.71454","open_access":"1"}],"day":"20","article_processing_charge":"Yes (via OA deal)","language":[{"iso":"eng"}],"scopus_import":"1","researchdata_availability":"yes","month":"07","doi":"10.1111/nph.71454","das_tickbox":"1","dataavailabilitystatement":"Original data associated with this study have been deposited in Dataset S1. The accession nos. of A. thaliana genes used in this study are as follows: CHC1 (AT3G11130), CHC2 (AT3G08530), CLC2 (AT2G40060), TPLATE (AT3G01780), AP2A1 (AT5G22770), DRP1C (AT1G14830), GNOM-LIKE1 (AT5G39500), BEN3/BIG2 (AT3G60860), TMK4 (AT3G23750), PIN1 (AT1G73590), AUXILIN-LIKE1 (AT4G12780), AP1M2 (AT1G60780), ECHIDNA (AT1G09330), SEC5A (AT1G76850), SEC5B (AT1G21170), TUB2 (AT5G62690), and PP2AA3 (AT1G13320).","author":[{"id":"45F536D2-F248-11E8-B48F-1D18A9856A87","full_name":"Adamowski, Maciek","last_name":"Adamowski","orcid":"0000-0001-6463-5257","first_name":"Maciek"},{"last_name":"Gackowski","full_name":"Gackowski, Adam","first_name":"Adam"},{"first_name":"Ivana","last_name":"Matijevic","full_name":"Matijevic, Ivana","id":"83c17ce3-15b2-11ec-abd3-f486545870bd"},{"first_name":"Saqer S.","full_name":"Alotaibi, Saqer S.","last_name":"Alotaibi"},{"id":"4159519E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8302-7596","last_name":"Friml","full_name":"Friml, Jiří","first_name":"Jiří"}],"acknowledgement":"The authors wish to acknowledge Dr. Paweł Baster for cloning PIN1-GFP-2/pDONR221, Ms. Aline Monzer and Dr. Mingyue Li for help with CHC protein level evaluation, Dr. Michał Rychłowski for help with confocal microscopy, Prof. Ari Pekka Mähönen for sharing the p1R4-pUBQ10:XVE plasmid, and Prof. Ying Gu for sharing seeds of the sec5 mutant. M.A. would like to thank Dr. Xixi Zhang and Prof. Sebastian Bednarek for inspiring discussions. This work was supported by the Taif University Researchers Supporting Project, TURSP-HC2022/02 to JF and SA and Austrian Science Fund (FWF): I 3630-B25 to JF. Open Access funding provided by Institute of Science and Technology Austria.","supplementarymaterial":"yes","corr_author":"1","department":[{"_id":"JiFr"},{"_id":"MaLo"},{"_id":"GradSch"}],"oa_version":"Published Version","quality_controlled":"1","status":"public","oa":1,"OA_type":"hybrid","external_id":{"pmid":["42477503"]},"project":[{"grant_number":"I03630","_id":"26538374-B435-11E9-9278-68D0E5697425","name":"Molecular mechanisms of endocytic cargo recognition in plants","call_identifier":"FWF"}],"date_published":"2026-07-20T00:00:00Z","_id":"22647","date_updated":"2026-08-04T07:58:27Z","pmid":1,"publication_identifier":{"eissn":["1469-8137"],"issn":["0028-646X"]},"citation":{"chicago":"Adamowski, Maciek, Adam Gackowski, Ivana Matijevic, Saqer S. Alotaibi, and Jiří Friml. “The Role of Clathrin in Post‐Golgi Secretion in Plant Cells.” <i>New Phytologist</i>. Wiley, 2026. <a href=\"https://doi.org/10.1111/nph.71454\">https://doi.org/10.1111/nph.71454</a>.","apa":"Adamowski, M., Gackowski, A., Matijevic, I., Alotaibi, S. S., &#38; Friml, J. (2026). The role of clathrin in post‐Golgi secretion in plant cells. <i>New Phytologist</i>. Wiley. <a href=\"https://doi.org/10.1111/nph.71454\">https://doi.org/10.1111/nph.71454</a>","short":"M. Adamowski, A. Gackowski, I. Matijevic, S.S. Alotaibi, J. Friml, New Phytologist (2026).","ieee":"M. Adamowski, A. Gackowski, I. Matijevic, S. S. Alotaibi, and J. Friml, “The role of clathrin in post‐Golgi secretion in plant cells,” <i>New Phytologist</i>. Wiley, 2026.","mla":"Adamowski, Maciek, et al. “The Role of Clathrin in Post‐Golgi Secretion in Plant Cells.” <i>New Phytologist</i>, nph. 71454, Wiley, 2026, doi:<a href=\"https://doi.org/10.1111/nph.71454\">10.1111/nph.71454</a>.","ista":"Adamowski M, Gackowski A, Matijevic I, Alotaibi SS, Friml J. 2026. The role of clathrin in post‐Golgi secretion in plant cells. New Phytologist., nph. 71454.","ama":"Adamowski M, Gackowski A, Matijevic I, Alotaibi SS, Friml J. The role of clathrin in post‐Golgi secretion in plant cells. <i>New Phytologist</i>. 2026. doi:<a href=\"https://doi.org/10.1111/nph.71454\">10.1111/nph.71454</a>"},"publisher":"Wiley","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"The role of clathrin in post‐Golgi secretion in plant cells","year":"2026","type":"journal_article","date_created":"2026-08-04T06:48:41Z","article_type":"original","publication_status":"epub_ahead","article_number":"nph.71454","abstract":[{"text":"Within the plant endomembrane system, the vesicle coat protein clathrin localizes to the plasma membrane (PM) and the trans-Golgi Network/early endosome (TGN/EE). While the role of clathrin in endocytosis at the PM is well established, its function at TGN/EE, presumably in late secretion (trafficking from the TGN/EE to the cell surface) or en route to the vacuole, is debated. Similarly debated are potential homeostatic mechanisms balancing the trafficking routes, especially endocytosis and late secretion.\r\nWe address these questions in Arabidopsis thaliana using conditional silencing of CLATHRIN HEAVY CHAIN (CHC), conditional overexpression of the clathrin uncoating factor AUXILIN-LIKE1, and secretory mutants.\r\nCHC silencing interferes with trafficking of cargoes destined for the apoplast and the PM, supporting a function of clathrin in late secretion. The secretory cargoes become abnormally rerouted from the TGN/EE to the vacuole. Unlike CHC silencing, overexpression of AUXILIN-LIKE1 selectively inhibits clathrin-mediated endocytosis while secretion continues normally at early points of induction. Conversely, secretory mutants exhibit a reduced PM recruitment of clathrin, and variably, of the TPLATE endocytic component.\r\nTogether, our data show a role of clathrin in secretion and suggest secretion as a fundamental trafficking process to which endocytosis is adjusted by a weak homeostatic mechanism.","lang":"eng"}],"publication":"New Phytologist"},{"type":"journal_article","date_created":"2026-08-03T13:21:14Z","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"ddc":["510"],"file":[{"content_type":"application/pdf","date_updated":"2026-08-04T05:55:58Z","date_created":"2026-08-04T05:55:58Z","creator":"dernst","file_id":"22641","checksum":"1b90ff7da16b9604d6fe2c6281493456","file_name":"2026_LettersMathPhysics_Desio.pdf","file_size":371840,"success":1,"relation":"main_file","access_level":"open_access"}],"article_number":"87","article_type":"original","publication_status":"published","abstract":[{"text":"We present an abstract Dyson expansion for perturbations that are merely relatively form-bounded, and apply it to the polaron problem. For a large class of polaron-type models, including the Fröhlich and Nelson models, we prove that the vacuum expectation value of the heat semi-group is a completely monotone function of the square of the total momentum. Consequently, the ground-state energy is a concave function of the square of the momentum, a result recently proved for the Fröhlich model in [14] using a probabilistic approach via Wiener integrals.","lang":"eng"}],"volume":116,"publication":"Letters in Mathematical Physics","_id":"22639","date_updated":"2026-08-04T05:57:21Z","publication_identifier":{"issn":["1573-0530"]},"citation":{"ama":"Desio D, Seiringer R. Dyson expansion for form-bounded perturbations and applications to the polaron problem. <i>Letters in Mathematical Physics</i>. 2026;116(4). doi:<a href=\"https://doi.org/10.1007/s11005-026-02107-2\">10.1007/s11005-026-02107-2</a>","ista":"Desio D, Seiringer R. 2026. Dyson expansion for form-bounded perturbations and applications to the polaron problem. Letters in Mathematical Physics. 116(4), 87.","mla":"Desio, Davide, and Robert Seiringer. “Dyson Expansion for Form-Bounded Perturbations and Applications to the Polaron Problem.” <i>Letters in Mathematical Physics</i>, vol. 116, no. 4, 87, Springer Nature, 2026, doi:<a href=\"https://doi.org/10.1007/s11005-026-02107-2\">10.1007/s11005-026-02107-2</a>.","short":"D. Desio, R. Seiringer, Letters in Mathematical Physics 116 (2026).","ieee":"D. Desio and R. Seiringer, “Dyson expansion for form-bounded perturbations and applications to the polaron problem,” <i>Letters in Mathematical Physics</i>, vol. 116, no. 4. Springer Nature, 2026.","apa":"Desio, D., &#38; Seiringer, R. (2026). Dyson expansion for form-bounded perturbations and applications to the polaron problem. <i>Letters in Mathematical Physics</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s11005-026-02107-2\">https://doi.org/10.1007/s11005-026-02107-2</a>","chicago":"Desio, Davide, and Robert Seiringer. “Dyson Expansion for Form-Bounded Perturbations and Applications to the Polaron Problem.” <i>Letters in Mathematical Physics</i>. Springer Nature, 2026. <a href=\"https://doi.org/10.1007/s11005-026-02107-2\">https://doi.org/10.1007/s11005-026-02107-2</a>."},"title":"Dyson expansion for form-bounded perturbations and applications to the polaron problem","publisher":"Springer Nature","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2026","intvolume":"       116","arxiv":1,"supplementarymaterial":"no","corr_author":"1","acknowledgement":"Open access funding provided by Institute of Science and Technology (IST Austria).","author":[{"id":"ea10a57b-23f6-11ef-9085-80d8596d52ef","first_name":"Davide","orcid":"0000-0001-9840-3809","full_name":"Desio, Davide","last_name":"Desio"},{"full_name":"Seiringer, Robert","last_name":"Seiringer","orcid":"0000-0002-6781-0521","first_name":"Robert","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87"}],"quality_controlled":"1","status":"public","department":[{"_id":"RoSe"},{"_id":"GradSch"}],"oa_version":"Published Version","oa":1,"OA_type":"hybrid","date_published":"2026-07-17T00:00:00Z","external_id":{"arxiv":["2512.13443"]},"OA_place":"publisher","issue":"4","has_accepted_license":"1","day":"17","scopus_import":"1","researchdata_availability":"no","language":[{"iso":"eng"}],"article_processing_charge":"Yes (via OA deal)","month":"07","PlanS_conform":"1","file_date_updated":"2026-08-04T05:55:58Z","doi":"10.1007/s11005-026-02107-2","das_tickbox":"0"},{"month":"06","das_tickbox":"0","doi":"10.1021/jacs.6c06064","issue":"27","article_processing_charge":"No","language":[{"iso":"eng"}],"scopus_import":"1","researchdata_availability":"no","day":"15","oa_version":"None","department":[{"_id":"PaSc"}],"status":"public","quality_controlled":"1","external_id":{"pmid":["42377973"]},"date_published":"2026-06-15T00:00:00Z","OA_type":"closed access","intvolume":"       148","author":[{"full_name":"Lends, Alons","last_name":"Lends","first_name":"Alons"},{"full_name":"Lamon, Gaelle","last_name":"Lamon","first_name":"Gaelle"},{"first_name":"Alicia","last_name":"Vallet","full_name":"Vallet, Alicia"},{"first_name":"Axelle","full_name":"Grélard, Axelle","last_name":"Grélard"},{"first_name":"Estelle","full_name":"Morvan, Estelle","last_name":"Morvan"},{"full_name":"Aimanianda, Vishukumar","last_name":"Aimanianda","first_name":"Vishukumar"},{"id":"7B541462-FAF6-11E9-A490-E8DFE5697425","first_name":"Paul","full_name":"Schanda, Paul","last_name":"Schanda","orcid":"0000-0002-9350-7606"},{"full_name":"Loquet, Antoine","last_name":"Loquet","first_name":"Antoine"}],"supplementarymaterial":"yes","acknowledgement":"We thank the ANR (ANR-16-CE11-0020-02 to A. Loquet and V.A. and ANR-21-CE17-0032 to V.A.) as well as the Swiss National Science Foundation for early postdoc mobility project P2EZP2_184258 to A. Lends. This work has benefited from the Biophysical and Structural Chemistry Platform at Institut Européen de Chimie et Biologie IECB, Centre National de la Recherche Scientifique CNRS Unité d’Appui et de Recherche UAR 3033, INSERM US001, and the CNRS (IR-RMN FR3050 and Infranalytics FR2054).","page":"28037-28042","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"American Chemical Society","title":"On-cell detection of polysaccharide one-bond1Jch couplings by proton-detected solid-state NMR","year":"2026","pmid":1,"date_updated":"2026-08-04T05:52:13Z","_id":"22638","citation":{"mla":"Lends, Alons, et al. “On-Cell Detection of Polysaccharide One-Bond1Jch Couplings by Proton-Detected Solid-State NMR.” <i>Journal of the American Chemical Society</i>, vol. 148, no. 27, American Chemical Society, 2026, pp. 28037–42, doi:<a href=\"https://doi.org/10.1021/jacs.6c06064\">10.1021/jacs.6c06064</a>.","ista":"Lends A, Lamon G, Vallet A, Grélard A, Morvan E, Aimanianda V, Schanda P, Loquet A. 2026. On-cell detection of polysaccharide one-bond1Jch couplings by proton-detected solid-state NMR. Journal of the American Chemical Society. 148(27), 28037–28042.","ieee":"A. Lends <i>et al.</i>, “On-cell detection of polysaccharide one-bond1Jch couplings by proton-detected solid-state NMR,” <i>Journal of the American Chemical Society</i>, vol. 148, no. 27. American Chemical Society, pp. 28037–28042, 2026.","short":"A. Lends, G. Lamon, A. Vallet, A. Grélard, E. Morvan, V. Aimanianda, P. Schanda, A. Loquet, Journal of the American Chemical Society 148 (2026) 28037–28042.","apa":"Lends, A., Lamon, G., Vallet, A., Grélard, A., Morvan, E., Aimanianda, V., … Loquet, A. (2026). On-cell detection of polysaccharide one-bond1Jch couplings by proton-detected solid-state NMR. <i>Journal of the American Chemical Society</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/jacs.6c06064\">https://doi.org/10.1021/jacs.6c06064</a>","chicago":"Lends, Alons, Gaelle Lamon, Alicia Vallet, Axelle Grélard, Estelle Morvan, Vishukumar Aimanianda, Paul Schanda, and Antoine Loquet. “On-Cell Detection of Polysaccharide One-Bond1Jch Couplings by Proton-Detected Solid-State NMR.” <i>Journal of the American Chemical Society</i>. American Chemical Society, 2026. <a href=\"https://doi.org/10.1021/jacs.6c06064\">https://doi.org/10.1021/jacs.6c06064</a>.","ama":"Lends A, Lamon G, Vallet A, et al. On-cell detection of polysaccharide one-bond1Jch couplings by proton-detected solid-state NMR. <i>Journal of the American Chemical Society</i>. 2026;148(27):28037-28042. doi:<a href=\"https://doi.org/10.1021/jacs.6c06064\">10.1021/jacs.6c06064</a>"},"publication_identifier":{"issn":["0002-7863"],"eissn":["1520-5126"]},"abstract":[{"lang":"eng","text":"The one-bond proton-carbon coupling constant (1JCH) is an insightful probe of carbohydrate configuration. Equatorial and axial protons at the C1 position typically exhibit distinct 1JCH values, enabling NMR measurements to distinguish α- and β-configurations in carbohydrates. In principle, such measurements could provide insights into carbohydrates in the cell walls of intact microbes. However, traditionally, these measurements are performed by solution NMR with carbohydrates that were extracted, solubilized and fractionated, leaving the biological relevance of the measurements uncertain. Here, we demonstrate that 1H-detected solid-state NMR with fast magic-angle spinning allows quantitative measurements of 1JCH couplings for mobile capsular polysaccharides, directly on submilligram amounts of pathogenic cells. Our approach is demonstrated on intact cells of the pathogenic yeast Cryptococcus neoformans. High-resolution proton-detected spectra enabled the determination of coupling constants for five mobile polysaccharide units of the cryptococcal capsule, revealing their native configurations and confirming previous solution NMR-based anomeric configuration assignments."}],"publication_status":"published","article_type":"original","publication":"Journal of the American Chemical Society","volume":148,"date_created":"2026-08-03T13:20:41Z","type":"journal_article"},{"type":"journal_article","date_created":"2026-08-04T06:15:04Z","ddc":["500"],"tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"article_type":"original","publication_status":"epub_ahead","abstract":[{"text":"We analyze the average behavior of various arithmetic functions at the values of degree 𝑑 binary forms ordered by height, with probability 1. This approach yields averaged versions of the Chowla conjecture and the Bateman–Horn conjecture for random binary forms. Furthermore, we show that the rational Hasse principle holds for almost all Châtelet varieties defined by a fixed norm form of degree 𝑒 and by varying binary forms of fixed degree 𝑑, provided 𝑒 divides 𝑑. This proves an average version of a conjecture of Colliot-Thélène.","lang":"eng"}],"publication":"Glasgow Mathematical Journal","_id":"22644","date_updated":"2026-08-04T06:28:01Z","publication_identifier":{"eissn":["1469-509X"],"issn":["0017-0895"]},"citation":{"chicago":"Diao, Yijie. “Liouville Function, von Mangoldt Function, and Norm Forms at Random Binary Forms.” <i>Glasgow Mathematical Journal</i>. Cambridge University Press, 2026. <a href=\"https://doi.org/10.1017/s0017089526101074\">https://doi.org/10.1017/s0017089526101074</a>.","apa":"Diao, Y. (2026). Liouville function, von Mangoldt function, and norm forms at random binary forms. <i>Glasgow Mathematical Journal</i>. Cambridge University Press. <a href=\"https://doi.org/10.1017/s0017089526101074\">https://doi.org/10.1017/s0017089526101074</a>","ieee":"Y. Diao, “Liouville function, von Mangoldt function, and norm forms at random binary forms,” <i>Glasgow Mathematical Journal</i>. Cambridge University Press, pp. 1–34, 2026.","short":"Y. Diao, Glasgow Mathematical Journal (2026) 1–34.","mla":"Diao, Yijie. “Liouville Function, von Mangoldt Function, and Norm Forms at Random Binary Forms.” <i>Glasgow Mathematical Journal</i>, Cambridge University Press, 2026, pp. 1–34, doi:<a href=\"https://doi.org/10.1017/s0017089526101074\">10.1017/s0017089526101074</a>.","ista":"Diao Y. 2026. Liouville function, von Mangoldt function, and norm forms at random binary forms. Glasgow Mathematical Journal., 1–34.","ama":"Diao Y. Liouville function, von Mangoldt function, and norm forms at random binary forms. <i>Glasgow Mathematical Journal</i>. 2026:1-34. doi:<a href=\"https://doi.org/10.1017/s0017089526101074\">10.1017/s0017089526101074</a>"},"publisher":"Cambridge University Press","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"Liouville function, von Mangoldt function, and norm forms at random binary forms","mathsc":["11N32","11N37","11D57","11G35"],"year":"2026","arxiv":1,"page":"1-34","author":[{"id":"7b7eb4ca-eb2c-11ec-b98b-accec0b20c3b","first_name":"Yijie","full_name":"Diao, Yijie","last_name":"Diao","orcid":"0000-0002-4989-5330"}],"supplementarymaterial":"no","corr_author":"1","acknowledgement":"I am deeply grateful to my advisor Tim Browning for suggesting this problem and for the many valuable discussions that shaped this work. I would also like to thank Efthymios Sofos, Matteo Verzobio, and Shuntaro Yamagishi for discussions and insights that contributed to this paper. I am also very grateful to the anonymous referee for their careful reading and for the considerable effort they put into improving the manuscript.","department":[{"_id":"TiBr"},{"_id":"GradSch"}],"oa_version":"Published Version","quality_controlled":"1","status":"public","OA_type":"hybrid","oa":1,"external_id":{"arxiv":["2506.18065"]},"date_published":"2026-07-21T00:00:00Z","OA_place":"publisher","has_accepted_license":"1","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1017/S0017089526101074"}],"day":"21","language":[{"iso":"eng"}],"article_processing_charge":"Yes (via OA deal)","researchdata_availability":"no","scopus_import":"1","month":"07","PlanS_conform":"1","doi":"10.1017/s0017089526101074","das_tickbox":"0"},{"has_accepted_license":"1","issue":"4","OA_place":"publisher","language":[{"iso":"eng"}],"article_processing_charge":"Yes","researchdata_availability":"no","scopus_import":"1","day":"01","file_date_updated":"2026-05-29T13:19:37Z","month":"07","das_tickbox":"0","doi":"10.1145/3811353","intvolume":"        45","author":[{"id":"44b7120e-eb97-11eb-a6c2-e1557aa81d02","first_name":"Aleksei","orcid":"0000-0003-2189-3904","full_name":"Kalinov, Aleksei","last_name":"Kalinov"},{"id":"6340d7f0-b48d-11eb-b10d-b7487e71d9f1","full_name":"Ly, Mickaël","last_name":"Ly","first_name":"Mickaël"},{"last_name":"Hafner","full_name":"Hafner, Christian","first_name":"Christian","id":"400429CC-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Christopher J","full_name":"Wojtan, Christopher J","last_name":"Wojtan","orcid":"0000-0001-6646-5546","id":"3C61F1D2-F248-11E8-B48F-1D18A9856A87"}],"supplementarymaterial":"yes","acknowledgement":"We thank the anonymous reviewers for their helpful comments, the members of the Visual Computing Group at ISTA for their feedback. We also thank Jonathan Gagnon for their help with running the Lapped Textures codes and SideFX for the Houdini Education software licenses.\r\nImages in Fig. 2 by Kisoulou and Vultured on Unsplash, Michal Jarmoluk and Public Domain Pictures from Pixabay and Hawai‘i Volcanoes NPS on flickr. This research was supported by the Scientific Service Units (SSU) of ISTA through resources provided by Scientific Computing and was funded in part by the European Union (ERC-2021-COG 101045083 CoDiNA).","corr_author":"1","oa_version":"Published Version","department":[{"_id":"GradSch"},{"_id":"ChWo"}],"quality_controlled":"1","status":"public","conference":{"name":"SIGGRAPH: International Conference and Exhibition on Computer Graphics and Interactive Techniques","end_date":"2026-07-23","start_date":"2026-07-19","location":"Los Angeles, CA, United States"},"project":[{"grant_number":"101045083","name":"Computational Discovery of Numerical Algorithms for Animation and Simulation of Natural Phenomena","_id":"34bc2376-11ca-11ed-8bc3-9a3b3961a088"}],"date_published":"2026-07-01T00:00:00Z","oa":1,"OA_type":"gold","date_updated":"2026-08-04T09:07:44Z","_id":"21923","acknowledged_ssus":[{"_id":"ScienComp"}],"citation":{"ama":"Kalinov A, Ly M, Hafner C, Wojtan C. Physics-inspired procedural texturing of extremely deformable surfaces. <i>ACM Transactions on Graphics</i>. 2026;45(4). doi:<a href=\"https://doi.org/10.1145/3811353\">10.1145/3811353</a>","chicago":"Kalinov, Aleksei, Mickaël Ly, Christian Hafner, and Chris Wojtan. “Physics-Inspired Procedural Texturing of Extremely Deformable Surfaces.” <i>ACM Transactions on Graphics</i>. Association for Computing Machinery, 2026. <a href=\"https://doi.org/10.1145/3811353\">https://doi.org/10.1145/3811353</a>.","apa":"Kalinov, A., Ly, M., Hafner, C., &#38; Wojtan, C. (2026). Physics-inspired procedural texturing of extremely deformable surfaces. <i>ACM Transactions on Graphics</i>. Los Angeles, CA, United States: Association for Computing Machinery. <a href=\"https://doi.org/10.1145/3811353\">https://doi.org/10.1145/3811353</a>","ieee":"A. Kalinov, M. Ly, C. Hafner, and C. Wojtan, “Physics-inspired procedural texturing of extremely deformable surfaces,” <i>ACM Transactions on Graphics</i>, vol. 45, no. 4. Association for Computing Machinery, 2026.","short":"A. Kalinov, M. Ly, C. Hafner, C. Wojtan, ACM Transactions on Graphics 45 (2026).","ista":"Kalinov A, Ly M, Hafner C, Wojtan C. 2026. Physics-inspired procedural texturing of extremely deformable surfaces. ACM Transactions on Graphics. 45(4), 154.","mla":"Kalinov, Aleksei, et al. “Physics-Inspired Procedural Texturing of Extremely Deformable Surfaces.” <i>ACM Transactions on Graphics</i>, vol. 45, no. 4, 154, Association for Computing Machinery, 2026, doi:<a href=\"https://doi.org/10.1145/3811353\">10.1145/3811353</a>."},"publication_identifier":{"issn":["0730-0301"]},"publisher":"Association for Computing Machinery","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","title":"Physics-inspired procedural texturing of extremely deformable surfaces","year":"2026","date_created":"2026-05-29T13:25:16Z","type":"journal_article","ddc":["006"],"file":[{"access_level":"open_access","file_size":77337231,"relation":"main_file","success":1,"checksum":"ea165bf731ddd3045f83878dcb833672","file_name":"tog454-article154-supplemental.mp4","file_id":"21924","creator":"akalinov","date_created":"2026-05-29T13:19:33Z","date_updated":"2026-05-29T13:19:33Z","content_type":"video/mp4"},{"date_updated":"2026-05-29T13:19:37Z","date_created":"2026-05-29T13:19:37Z","content_type":"video/mp4","creator":"akalinov","file_name":"tog454-article154-video.mp4","checksum":"6274cfb15ea5ba7324b74afc7b0d9629","file_id":"21925","access_level":"open_access","relation":"main_file","success":1,"file_size":226633977},{"creator":"akalinov","date_updated":"2026-05-29T13:19:33Z","date_created":"2026-05-29T13:19:33Z","content_type":"application/pdf","access_level":"open_access","success":1,"relation":"main_file","file_size":6793867,"file_name":"tog454-article154-supplemental.pdf","checksum":"9d41b322a7876be9a3311017b9973183","file_id":"21926"},{"file_id":"21927","file_name":"tog454-article154-main-1.pdf","checksum":"51bc60d2de867fbfa570652dec7993b4","success":1,"relation":"main_file","file_size":84173392,"access_level":"open_access","content_type":"application/pdf","date_updated":"2026-05-29T13:19:36Z","date_created":"2026-05-29T13:19:36Z","creator":"akalinov"}],"tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"related_material":{"link":[{"relation":"press_release","description":"News on ISTA website","url":"https://ista.ac.at/en/news/infinite-deformation-and-shape-computation/"}]},"abstract":[{"text":"The appearance of simulated natural phenomena heavily depends on the way surfaces are textured. However, applying texture maps to dynamic deformable surfaces presents a significant challenge, due to ever-shifting differences in length scales involved. When these surfaces move and advect the texture along with them, their final appearance degrades as deformed regions dramatically distort their texture map. Modifications to the texture directly at the pixel level in response to the deformation may introduce ghosting artifacts and look unnatural. In the real world, the appearance of surface details on a deforming material changes through the interplay of physical processes such as rupturing, exposure of internal structure, or wrinkling. Motivated by these behaviors, in this work we explore how physical principles can guide the texturing methods based on the measure of surface deformation.\r\nWe present two novel wave-based procedural texturing algorithms which reproduce common physical properties like advection and self-similarity, enabling the plausible animation of deforming objects with extreme texture map distortions. Our algorithms are fully procedural, require no actual physics simulation, and store no state or history of deformation besides the input UV map, making them highly parallelizable on the GPU and efficient enough for real-time applications. We show the versatility of the method by animating physical phenomena with extreme deformations such as flowing lava, stretching putty and outpouring sludge.","lang":"eng"}],"article_type":"original","publication_status":"published","article_number":"154","publication":"ACM Transactions on Graphics","keyword":["Procedural animation"],"volume":45},{"citation":{"apa":"Zoller, B., Benichou, A., Gregor, T., &#38; Tkačik, G. (2026). Invariant nonequilibrium dynamics in gene regulation optimize information flow. <i>Proceedings of the National Academy of Sciences of the United States of America</i>. National Academy of Sciences. <a href=\"https://doi.org/10.1073/pnas.2524855123\">https://doi.org/10.1073/pnas.2524855123</a>","chicago":"Zoller, Benjamin, Alexis Benichou, Thomas Gregor, and Gašper Tkačik. “Invariant Nonequilibrium Dynamics in Gene Regulation Optimize Information Flow.” <i>Proceedings of the National Academy of Sciences of the United States of America</i>. National Academy of Sciences, 2026. <a href=\"https://doi.org/10.1073/pnas.2524855123\">https://doi.org/10.1073/pnas.2524855123</a>.","mla":"Zoller, Benjamin, et al. “Invariant Nonequilibrium Dynamics in Gene Regulation Optimize Information Flow.” <i>Proceedings of the National Academy of Sciences of the United States of America</i>, vol. 123, no. 28, e2524855123, National Academy of Sciences, 2026, doi:<a href=\"https://doi.org/10.1073/pnas.2524855123\">10.1073/pnas.2524855123</a>.","ista":"Zoller B, Benichou A, Gregor T, Tkačik G. 2026. Invariant nonequilibrium dynamics in gene regulation optimize information flow. Proceedings of the National Academy of Sciences of the United States of America. 123(28), e2524855123.","short":"B. Zoller, A. Benichou, T. Gregor, G. Tkačik, Proceedings of the National Academy of Sciences of the United States of America 123 (2026).","ieee":"B. Zoller, A. Benichou, T. Gregor, and G. Tkačik, “Invariant nonequilibrium dynamics in gene regulation optimize information flow,” <i>Proceedings of the National Academy of Sciences of the United States of America</i>, vol. 123, no. 28. National Academy of Sciences, 2026.","ama":"Zoller B, Benichou A, Gregor T, Tkačik G. Invariant nonequilibrium dynamics in gene regulation optimize information flow. <i>Proceedings of the National Academy of Sciences of the United States of America</i>. 2026;123(28). doi:<a href=\"https://doi.org/10.1073/pnas.2524855123\">10.1073/pnas.2524855123</a>"},"publication_identifier":{"issn":["0027-8424"],"eissn":["1091-6490"]},"pmid":1,"date_updated":"2026-08-04T09:21:10Z","_id":"22363","license":"https://creativecommons.org/licenses/by-nc-nd/4.0/","year":"2026","publisher":"National Academy of Sciences","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","title":"Invariant nonequilibrium dynamics in gene regulation optimize information flow","ddc":["570"],"file":[{"file_size":24580098,"relation":"main_file","success":1,"access_level":"open_access","file_id":"22376","checksum":"f4d82dd706ff1629db68d71190288350","file_name":"2026_PNAS_Zoller.pdf","creator":"dernst","content_type":"application/pdf","date_created":"2026-07-20T13:12:47Z","date_updated":"2026-07-20T13:12:47Z"}],"tmp":{"image":"/images/cc_by_nc_nd.png","short":"CC BY-NC-ND (4.0)","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode"},"related_material":{"link":[{"relation":"press_release","description":"News on ISTA website","url":"https://ista.ac.at/en/news/the-art-of-proper-flickering/"}]},"date_created":"2026-07-19T22:01:46Z","type":"journal_article","publication":"Proceedings of the National Academy of Sciences of the United States of America","volume":123,"abstract":[{"text":"Eukaryotic gene regulation relies on stochastic yet controlled promoter switching, in which genes transition between transcriptionally active and inactive states. Despite the molecular complexity of this process, recent studies have revealed a surprising invariance of the “switching correlation time” (TC)—the characteristic decay time of the autocorrelation function of promoter activity fluctuations—across gene expression levels in multiple genes and organisms. A biophysically plausible explanation for this invariance has so far been lacking. Here, we show that this empirical constraint imposes stringent requirements on minimal yet realistic models of transcriptional regulation. Specifically, reproducing TC–invariance requires regulatory architectures with at least four internal states and nonequilibrium dynamics that break detailed balance. Using Bayesian inference on Drosophila gap gene expression data, we demonstrate that such models i) quantitatively reproduce the observed TC–invariance, ii) remain robust to parameter perturbations, and iii) maximize information transmission from transcription factor concentration to gene expression. Remarkably, the TC-invariant modulation strategy we identify as optimal closely parallels contemporary control-theoretic results on the modulation of stochastic switching systems. Taken together, our results suggest that eukaryotic transcriptional regulation operates in a nonequilibrium regime to balance precision, reaction-rate limitations, and energy dissipation, thereby achieving near-optimal information transmission under fundamental physical constraints.","lang":"eng"}],"article_type":"original","publication_status":"published","article_number":"e2524855123","article_processing_charge":"Yes","language":[{"iso":"eng"}],"scopus_import":"1","researchdata_availability":"yes","day":"14","has_accepted_license":"1","issue":"28","OA_place":"publisher","das_tickbox":"1","doi":"10.1073/pnas.2524855123","file_date_updated":"2026-07-20T13:12:47Z","month":"07","author":[{"first_name":"Benjamin","last_name":"Zoller","full_name":"Zoller, Benjamin"},{"first_name":"Alexis","full_name":"Benichou, Alexis","last_name":"Benichou","id":"3a67230c-5fc0-11ef-a673-de9a2ffadafe"},{"first_name":"Thomas","full_name":"Gregor, Thomas","last_name":"Gregor"},{"first_name":"Gašper","orcid":"0000-0002-6699-1455","last_name":"Tkačik","full_name":"Tkačik, Gašper","id":"3D494DCA-F248-11E8-B48F-1D18A9856A87"}],"corr_author":"1","supplementarymaterial":"yes","acknowledgement":"This work was supported by the French NationalResearch Agency (ANR-20-CE12-0028 “ChroDynE” and ANR-23-CE13-0021“GastruCyp” and ANR-10 LABX-73 “Revive;” all T.G.), and by funding from theEuropean Research Council (ERC-2023-SyG, “Dynatrans,” 101118866, T.G. andG.T.). This work was also supported in part by the U.S. NSF, through the Centerfor the Physics of Biological Function (PHY-1734030, T.G.), and by NIH GrantsR01GM097275, U01DA047730, and U01DK127429 (T.G.)","dataavailabilitystatement":"Software code data have been deposited in Institute Pasteur GitHub (https://gitlab.pasteur.fr/tglab/invariantpromoterdynamicspaper) (51).","intvolume":"       123","external_id":{"pmid":["42406962"]},"project":[{"grant_number":"101118866","_id":"7bfe6a29-9f16-11ee-852c-c0da5e2045d9","name":"Transcription in 4D: the dynamic interplay between chromatin architecture and gene expression in developing pseudo-embryos"}],"date_published":"2026-07-14T00:00:00Z","OA_type":"hybrid","oa":1,"department":[{"_id":"GaTk"}],"oa_version":"Published Version","status":"public","quality_controlled":"1"},{"related_material":{"link":[{"url":"https://ista.ac.at/en/news/quantum-bath-syncs-distant-qubits/","relation":"press_release","description":"News on ISTA website"}]},"tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"file":[{"creator":"dernst","date_updated":"2026-08-04T05:40:41Z","date_created":"2026-08-04T05:40:41Z","content_type":"application/pdf","access_level":"open_access","file_size":5301241,"relation":"main_file","success":1,"checksum":"2bab109f975545d096c21dd72c738b6e","file_name":"2026_PhysicalReviewX_AndresJuanes.pdf","file_id":"22640"}],"ddc":["530"],"type":"journal_article","date_created":"2026-08-03T13:19:31Z","volume":16,"publication":"Physical Review X","article_number":"031005","publication_status":"published","article_type":"original","abstract":[{"text":"The distribution of entanglement across distant qubits is a central challenge for the operation of scalable quantum computers and large-scale quantum networks. Existing approaches rely on deterministic state transfer, or probabilistic protocols that require active control or measurements and postselection. Here, we demonstrate a fundamentally different, fully autonomous process, where two remote qubits are entangled through their coupling to a quantum-correlated photonic reservoir. In our experiment, a Josephson parametric converter produces a Gaussian, continuous-variable entangled state of propagating microwave fields that drives two spatially separated superconducting transmon qubits into a stationary, discrete-variable entangled state. We also show how qubit tomography unlocks a direct and sensitive verification of two-mode squeezing in the microwave domain. These results establish networks of qubits interfaced with distributed continuous-variable entangled states as a powerful platform for foundational studies and quantum-technology applications.","lang":"eng"}],"publication_identifier":{"eissn":["2160-3308"]},"citation":{"chicago":"Andres Juanes, Alejandro, J. Agustí, Riya Sett, Elena Redchenko, Lucky Kapoor, Samarth Hawaldar, P. Rabl, and Johannes M Fink. “Distributing Stationary Qubit Entanglement through a Nonlocal Squeezed Reservoir.” <i>Physical Review X</i>. American Physical Society, 2026. <a href=\"https://doi.org/10.1103/r4jt-j39w\">https://doi.org/10.1103/r4jt-j39w</a>.","apa":"Andres Juanes, A., Agustí, J., Sett, R., Redchenko, E., Kapoor, L., Hawaldar, S., … Fink, J. M. (2026). Distributing stationary qubit entanglement through a nonlocal squeezed reservoir. <i>Physical Review X</i>. American Physical Society. <a href=\"https://doi.org/10.1103/r4jt-j39w\">https://doi.org/10.1103/r4jt-j39w</a>","short":"A. Andres Juanes, J. Agustí, R. Sett, E. Redchenko, L. Kapoor, S. Hawaldar, P. Rabl, J.M. Fink, Physical Review X 16 (2026).","ieee":"A. Andres Juanes <i>et al.</i>, “Distributing stationary qubit entanglement through a nonlocal squeezed reservoir,” <i>Physical Review X</i>, vol. 16, no. 3. American Physical Society, 2026.","ista":"Andres Juanes A, Agustí J, Sett R, Redchenko E, Kapoor L, Hawaldar S, Rabl P, Fink JM. 2026. Distributing stationary qubit entanglement through a nonlocal squeezed reservoir. Physical Review X. 16(3), 031005.","mla":"Andres Juanes, Alejandro, et al. “Distributing Stationary Qubit Entanglement through a Nonlocal Squeezed Reservoir.” <i>Physical Review X</i>, vol. 16, no. 3, 031005, American Physical Society, 2026, doi:<a href=\"https://doi.org/10.1103/r4jt-j39w\">10.1103/r4jt-j39w</a>.","ama":"Andres Juanes A, Agustí J, Sett R, et al. Distributing stationary qubit entanglement through a nonlocal squeezed reservoir. <i>Physical Review X</i>. 2026;16(3). doi:<a href=\"https://doi.org/10.1103/r4jt-j39w\">10.1103/r4jt-j39w</a>"},"_id":"22637","acknowledged_ssus":[{"_id":"M-Shop"},{"_id":"NanoFab"}],"date_updated":"2026-08-04T09:18:57Z","year":"2026","DOAJ_listed":"1","title":"Distributing stationary qubit entanglement through a nonlocal squeezed reservoir","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","publisher":"American Physical Society","supplementarymaterial":"yes","corr_author":"1","acknowledgement":"We thank A. Trioni and C. N. Borja for assistance in device fabrication, C. Siegele for fruitful discussions, IBM for donating the JPC used in this work, and the MIBA machine shop and the ISTA nanofabrication facility for technical support. This work was funded in part by the Austrian Science Fund (FWF) through the excellence cluster quantA 10.55776/COE1 and the SFB BeyondC 10.55776/F71, as well as the European Union—NextGenerationEU, and ISTA. J. F. and L. K. acknowledge support from the Horizon Europe Program HORIZON-CL4-2022-QUANTUM-01-SGA via Project No. 101113946 OpenSuperQPlus100, and J. F. from the European Research Council No. 101089099 (ERC CoG cQEO). J. A. acknowledges support from the QUANTERA project MOLAR with reference No. PCI2024-153449, funded by MICIU/AEI/10.13039/501100011033 and the European Union. This research is part of the Munich Quantum Valley, which is supported by the Bavarian state government with funds from the Hightech Agenda Bayern Plus.","author":[{"last_name":"Andres Juanes","full_name":"Andres Juanes, Alejandro","first_name":"Alejandro","id":"7601fd3a-5355-11ee-ae5a-a20ca6f3cfb9"},{"first_name":"J.","full_name":"Agustí, J.","last_name":"Agustí"},{"full_name":"Sett, Riya","last_name":"Sett","orcid":"0000-0001-7641-8348","first_name":"Riya","id":"2E6D040E-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Redchenko","full_name":"Redchenko, Elena","first_name":"Elena","id":"2C21D6E8-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Lucky","orcid":"0000-0001-8319-2148","last_name":"Kapoor","full_name":"Kapoor, Lucky","id":"84b9700b-15b2-11ec-abd3-831089e67615"},{"id":"221708e1-1ff6-11ee-9fa6-85146607433e","first_name":"Samarth","orcid":"0000-0002-1965-4309","full_name":"Hawaldar, Samarth","last_name":"Hawaldar"},{"first_name":"P.","last_name":"Rabl","full_name":"Rabl, P."},{"id":"4B591CBA-F248-11E8-B48F-1D18A9856A87","first_name":"Johannes M","orcid":"0000-0001-8112-028X","full_name":"Fink, Johannes M","last_name":"Fink"}],"intvolume":"        16","dataavailabilitystatement":"The data that support the findings of this article are openly available  https://zenodo.org/records/19099731.","OA_type":"gold","oa":1,"date_published":"2026-07-13T00:00:00Z","project":[{"grant_number":"F07105","_id":"bdb108fd-d553-11ed-ba76-83dc74a9864f","name":"QUANTUM INFORMATION SYSTEMS BEYOND CLASSICAL CAPABILITIES / P5- Integration of Superconducting Quantum Circuits"},{"grant_number":"101089099","name":"Cavity Quantum Electro Optics: Microwave photonics with nonclassical states","_id":"bdadfa0d-d553-11ed-ba76-fb85edbd456a"}],"quality_controlled":"1","status":"public","oa_version":"Published Version","department":[{"_id":"JoFi"},{"_id":"GradSch"}],"day":"13","scopus_import":"1","researchdata_availability":"yes","article_processing_charge":"Yes","language":[{"iso":"eng"}],"OA_place":"publisher","issue":"3","has_accepted_license":"1","doi":"10.1103/r4jt-j39w","das_tickbox":"1","month":"07","file_date_updated":"2026-08-04T05:40:41Z","PlanS_conform":"1"}]
