[{"acknowledged_ssus":[{"_id":"M-Shop"},{"_id":"ScienComp"}],"_id":"21982","type":"journal_article","has_accepted_license":"1","intvolume":"       113","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"article_processing_charge":"Yes (via OA deal)","title":"Geometry of the vapor layer under a Leidenfrost hydrogel sphere","date_published":"2026-05-14T00:00:00Z","OA_type":"hybrid","file_date_updated":"2026-06-16T11:21:53Z","language":[{"iso":"eng"}],"oa":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","corr_author":"1","department":[{"_id":"ScWa"},{"_id":"GradSch"}],"abstract":[{"lang":"eng","text":"A floating Leidenfrost droplet exhibits curvature inversion of its underside, due to the balance of vapor pressure and surface tension. Using interferometric imaging, we find different behavior for a levitated hydrogel sphere. Curvature inversion is observed briefly just after deposition, but quickly gives way to a steady state with no inversion. We show the essential role of vaporization in shaping the underbelly of the hydrogel, where changes due to direct mass loss are more significant than the balance of vapor pressure and elastic forces."}],"PlanS_conform":"1","external_id":{"arxiv":["2507.04982"]},"acknowledgement":"This research was supported by the Scientific Service Units of The Institute of Science and Technology Austria (ISTA) through resources provided by the Miba Machine Shop and the Scientific Computing Facility. J.B. acknowledges funding from the European Union's Horizon research and innovation programme under the Marie Sklodowska-Curie Grant Agreement No. 101106500.","publication_identifier":{"issn":["2470-0045"],"eissn":["2470-0053"]},"arxiv":1,"date_updated":"2026-06-16T11:24:18Z","year":"2026","publication":"Physical Review E","date_created":"2026-06-10T07:36:41Z","status":"public","article_number":"L053502","issue":"5","ddc":["530"],"article_type":"letter_note","month":"05","oa_version":"Published Version","doi":"10.1103/m7gr-2t6j","quality_controlled":"1","OA_place":"publisher","publisher":"American Physical Society","volume":113,"author":[{"id":"b6798902-eea0-11ea-9cbc-a8e14286c631","first_name":"Vicente L","last_name":"Diaz Melian","full_name":"Diaz Melian, Vicente L"},{"id":"a550210f-223c-11ec-8182-e2d45e817efb","first_name":"Isaac C","orcid":"0000-0002-5010-6984","full_name":"Lenton, Isaac C","last_name":"Lenton"},{"last_name":"Binysh","full_name":"Binysh, Jack","first_name":"Jack"},{"first_name":"Anton","last_name":"Souslov","full_name":"Souslov, Anton"},{"full_name":"Waitukaitis, Scott R","last_name":"Waitukaitis","orcid":"0000-0002-2299-3176","id":"3A1FFC16-F248-11E8-B48F-1D18A9856A87","first_name":"Scott R"}],"day":"14","scopus_import":"1","file":[{"creator":"dernst","success":1,"checksum":"902cc8d177c8d3ae9cfe07c30375c9a9","relation":"main_file","file_size":3173197,"access_level":"open_access","file_name":"2026_PhysicalReviewE_DiazMelian.pdf","date_updated":"2026-06-16T11:21:53Z","file_id":"22014","date_created":"2026-06-16T11:21:53Z","content_type":"application/pdf"}],"citation":{"ama":"Diaz Melian VL, Lenton IC, Binysh J, Souslov A, Waitukaitis SR. Geometry of the vapor layer under a Leidenfrost hydrogel sphere. <i>Physical Review E</i>. 2026;113(5). doi:<a href=\"https://doi.org/10.1103/m7gr-2t6j\">10.1103/m7gr-2t6j</a>","ista":"Diaz Melian VL, Lenton IC, Binysh J, Souslov A, Waitukaitis SR. 2026. Geometry of the vapor layer under a Leidenfrost hydrogel sphere. Physical Review E. 113(5), L053502.","chicago":"Diaz Melian, Vicente L, Isaac C Lenton, Jack Binysh, Anton Souslov, and Scott R Waitukaitis. “Geometry of the Vapor Layer under a Leidenfrost Hydrogel Sphere.” <i>Physical Review E</i>. American Physical Society, 2026. <a href=\"https://doi.org/10.1103/m7gr-2t6j\">https://doi.org/10.1103/m7gr-2t6j</a>.","mla":"Diaz Melian, Vicente L., et al. “Geometry of the Vapor Layer under a Leidenfrost Hydrogel Sphere.” <i>Physical Review E</i>, vol. 113, no. 5, L053502, American Physical Society, 2026, doi:<a href=\"https://doi.org/10.1103/m7gr-2t6j\">10.1103/m7gr-2t6j</a>.","short":"V.L. Diaz Melian, I.C. Lenton, J. Binysh, A. Souslov, S.R. Waitukaitis, Physical Review E 113 (2026).","apa":"Diaz Melian, V. L., Lenton, I. C., Binysh, J., Souslov, A., &#38; Waitukaitis, S. R. (2026). Geometry of the vapor layer under a Leidenfrost hydrogel sphere. <i>Physical Review E</i>. American Physical Society. <a href=\"https://doi.org/10.1103/m7gr-2t6j\">https://doi.org/10.1103/m7gr-2t6j</a>","ieee":"V. L. Diaz Melian, I. C. Lenton, J. Binysh, A. Souslov, and S. R. Waitukaitis, “Geometry of the vapor layer under a Leidenfrost hydrogel sphere,” <i>Physical Review E</i>, vol. 113, no. 5. American Physical Society, 2026."},"publication_status":"published"},{"OA_type":"hybrid","language":[{"iso":"eng"}],"title":"Long-term evolution of regulatory DNA sequences. Part 1: Simulations on global, biophysically-realistic genotype–phenotype maps","article_processing_charge":"Yes (via OA deal)","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"date_published":"2026-05-09T00:00:00Z","intvolume":"        99","type":"journal_article","_id":"21983","has_accepted_license":"1","arxiv":1,"publication_identifier":{"eissn":["1879-0380"],"issn":["0959-437X"]},"acknowledgement":"We thank Nick Barton and Noa Ottilie Borst for essential contributions to this manuscript.\r\nE.M. acknowledges support from the APART-USA fellowship, jointly funded by the Austrian Academy of Sciences (ÖAW) and the Institute of Science and Technology Austria (ISTA).\r\nThis study was supported by the European Molecular Biology Laboratory (J.C.); the European Molecular Biology Laboratory Interdisciplinary Postdoc Programme (EIPOD) under the Marie Skłodowska-Curie Actions cofund (S.H.A.).","publication":"Current Opinion in Genetics & Development","date_created":"2026-06-10T07:37:12Z","year":"2026","date_updated":"2026-06-16T12:37:02Z","abstract":[{"lang":"eng","text":"Promoters and enhancers are cis-regulatory elements (CREs), DNA sequences that bind transcription factor (TF) proteins to up- or down-regulate target genes. Decades-long efforts yielded TF-DNA interaction models that predict how strongly an individual TF binds arbitrary DNA sequences and how individual binding events on the CRE combine to affect gene expression. These insights can be synthesized into a global, biophysically realistic, and quantitative genotype–phenotype map for gene regulation, a ‘holy grail’ for the application of evolutionary theory. A global map provides a rare opportunity to simulate the long-term evolution of regulatory sequences and pose several fundamental questions: How long does it take to evolve CREs de novo? How many non-trivial regulatory functions exist in sequence space? How connected are they? For which regulatory architecture is CRE evolution most rapid and evolvable? In this article, the first of a two-part series, we briefly review the pertinent modeling and simulation efforts for a unique system that enables close, quantitative, and mechanistic links between biophysics, as well as systems, synthetic, and evolutionary biology."}],"external_id":{"arxiv":["2601.19681"]},"PlanS_conform":"1","department":[{"_id":"GradSch"},{"_id":"CaGu"},{"_id":"GaTk"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","corr_author":"1","oa":1,"OA_place":"publisher","doi":"10.1016/j.gde.2026.102483","quality_controlled":"1","month":"05","article_type":"original","oa_version":"Published Version","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1016/j.gde.2026.102483"}],"status":"public","ddc":["570"],"article_number":"102483","citation":{"ieee":"E. Mascolo, R. E. Körei, S. Herrera-Álvarez, C. C. Guet, J. Crocker, and G. Tkačik, “Long-term evolution of regulatory DNA sequences. Part 1: Simulations on global, biophysically-realistic genotype–phenotype maps,” <i>Current Opinion in Genetics &#38; Development</i>, vol. 99. Elsevier, 2026.","short":"E. Mascolo, R.E. Körei, S. Herrera-Álvarez, C.C. Guet, J. Crocker, G. Tkačik, Current Opinion in Genetics &#38; Development 99 (2026).","apa":"Mascolo, E., Körei, R. E., Herrera-Álvarez, S., Guet, C. C., Crocker, J., &#38; Tkačik, G. (2026). Long-term evolution of regulatory DNA sequences. Part 1: Simulations on global, biophysically-realistic genotype–phenotype maps. <i>Current Opinion in Genetics &#38; Development</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.gde.2026.102483\">https://doi.org/10.1016/j.gde.2026.102483</a>","ama":"Mascolo E, Körei RE, Herrera-Álvarez S, Guet CC, Crocker J, Tkačik G. Long-term evolution of regulatory DNA sequences. Part 1: Simulations on global, biophysically-realistic genotype–phenotype maps. <i>Current Opinion in Genetics &#38; Development</i>. 2026;99. doi:<a href=\"https://doi.org/10.1016/j.gde.2026.102483\">10.1016/j.gde.2026.102483</a>","mla":"Mascolo, Elia, et al. “Long-Term Evolution of Regulatory DNA Sequences. Part 1: Simulations on Global, Biophysically-Realistic Genotype–Phenotype Maps.” <i>Current Opinion in Genetics &#38; Development</i>, vol. 99, 102483, Elsevier, 2026, doi:<a href=\"https://doi.org/10.1016/j.gde.2026.102483\">10.1016/j.gde.2026.102483</a>.","chicago":"Mascolo, Elia, Reka E Körei, Santiago Herrera-Álvarez, Calin C Guet, Justin Crocker, and Gašper Tkačik. “Long-Term Evolution of Regulatory DNA Sequences. Part 1: Simulations on Global, Biophysically-Realistic Genotype–Phenotype Maps.” <i>Current Opinion in Genetics &#38; Development</i>. Elsevier, 2026. <a href=\"https://doi.org/10.1016/j.gde.2026.102483\">https://doi.org/10.1016/j.gde.2026.102483</a>.","ista":"Mascolo E, Körei RE, Herrera-Álvarez S, Guet CC, Crocker J, Tkačik G. 2026. Long-term evolution of regulatory DNA sequences. Part 1: Simulations on global, biophysically-realistic genotype–phenotype maps. Current Opinion in Genetics &#38; Development. 99, 102483."},"publication_status":"published","scopus_import":"1","author":[{"last_name":"Mascolo","full_name":"Mascolo, Elia","first_name":"Elia","id":"776a6ed0-a053-11f0-8635-80b95e0e0d53","orcid":"0000-0003-2977-7844"},{"last_name":"Körei","full_name":"Körei, Reka E","id":"50FDE43E-AA30-11E9-A72B-8A12E6697425","first_name":"Reka E"},{"last_name":"Herrera-Álvarez","full_name":"Herrera-Álvarez, Santiago","first_name":"Santiago"},{"full_name":"Guet, Calin C","last_name":"Guet","orcid":"0000-0001-6220-2052","first_name":"Calin C","id":"47F8433E-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Crocker, Justin","last_name":"Crocker","first_name":"Justin"},{"first_name":"Gašper","id":"3D494DCA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6699-1455","last_name":"Tkačik","full_name":"Tkačik, Gašper"}],"day":"09","publisher":"Elsevier","volume":99},{"publication":"Evolution","date_created":"2026-06-10T07:38:12Z","year":"2026","date_updated":"2026-06-16T12:46:02Z","publication_identifier":{"eissn":["1558-5646"],"issn":["0014-3820"]},"acknowledgement":"We thank Fyodor Kondrashov and Gašper Tkačik for valuable input and guidance in building the model, and Stephen Abedon as well as the two anonymous reviewers for the comments provided on the manuscript.","external_id":{"pmid":["41968110"]},"PlanS_conform":"1","abstract":[{"lang":"eng","text":"Upon infecting a bacterial cell, temperate phages make a decision between lysis and lysogeny. While research has previously explored how phages sense environmental information to make this choice, most studies have focused on modelling known mechanisms that impact the decision. These mechanisms tell us what environmental information the phage does respond to, but not what it should respond to, as the signals sensed by the phage may serve as proxies for other sources of information. Here, using a mechanism-agnostic population dynamics model, we find that irreversible phage binding to lysogens protects sensitive host cells from infection. This results in lysogens being an additional environmental factor that the phage should sense while making its decision to undergo lysis or lysogeny. Using this model, we derive a responsive lysogeny probability for phages that respond to both cell and lysogen densities optimized towards invading phage-occupied systems, and show that it is more capable of invading and resisting invasion than phage with fixed lysogeny probabilities across different environmental conditions."}],"department":[{"_id":"CaGu"}],"corr_author":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa":1,"language":[{"iso":"eng"}],"file_date_updated":"2026-06-16T12:45:09Z","OA_type":"hybrid","pmid":1,"date_published":"2026-06-01T00:00:00Z","article_processing_charge":"Yes (via OA deal)","title":"Responsive lysogeny under nonproductive phage binding","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"intvolume":"        80","has_accepted_license":"1","_id":"21985","type":"journal_article","publication_status":"published","page":"1365-1373","file":[{"date_updated":"2026-06-16T12:45:09Z","file_id":"22015","date_created":"2026-06-16T12:45:09Z","content_type":"application/pdf","relation":"main_file","file_size":2077781,"access_level":"open_access","file_name":"2026_Evolution_Wu.pdf","success":1,"checksum":"6d0f48566a7a36cb0c469e1968c9cb1c","creator":"dernst"}],"citation":{"ieee":"B. Wu and C. C. Guet, “Responsive lysogeny under nonproductive phage binding,” <i>Evolution</i>, vol. 80, no. 6. Oxford University Press, pp. 1365–1373, 2026.","mla":"Wu, Bryan, and Calin C. Guet. “Responsive Lysogeny under Nonproductive Phage Binding.” <i>Evolution</i>, vol. 80, no. 6, Oxford University Press, 2026, pp. 1365–73, doi:<a href=\"https://doi.org/10.1093/evolut/qpag061\">10.1093/evolut/qpag061</a>.","ama":"Wu B, Guet CC. Responsive lysogeny under nonproductive phage binding. <i>Evolution</i>. 2026;80(6):1365-1373. doi:<a href=\"https://doi.org/10.1093/evolut/qpag061\">10.1093/evolut/qpag061</a>","ista":"Wu B, Guet CC. 2026. Responsive lysogeny under nonproductive phage binding. Evolution. 80(6), 1365–1373.","chicago":"Wu, Bryan, and Calin C Guet. “Responsive Lysogeny under Nonproductive Phage Binding.” <i>Evolution</i>. Oxford University Press, 2026. <a href=\"https://doi.org/10.1093/evolut/qpag061\">https://doi.org/10.1093/evolut/qpag061</a>.","short":"B. Wu, C.C. Guet, Evolution 80 (2026) 1365–1373.","apa":"Wu, B., &#38; Guet, C. C. (2026). Responsive lysogeny under nonproductive phage binding. <i>Evolution</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/evolut/qpag061\">https://doi.org/10.1093/evolut/qpag061</a>"},"scopus_import":"1","day":"01","related_material":{"link":[{"url":"https://github.com/theguetlab/responsive-lysogeny","relation":"software"}]},"author":[{"id":"3C521EBA-F248-11E8-B48F-1D18A9856A87","first_name":"Bryan","last_name":"Wu","full_name":"Wu, Bryan"},{"last_name":"Guet","full_name":"Guet, Calin C","first_name":"Calin C","id":"47F8433E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6220-2052"}],"volume":80,"publisher":"Oxford University Press","OA_place":"publisher","doi":"10.1093/evolut/qpag061","quality_controlled":"1","oa_version":"Published Version","month":"06","article_type":"original","ddc":["570"],"issue":"6","status":"public"},{"tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"das_tickbox":"1","title":"Scanning tunneling microscope-based break-junction technique - A tutorial","article_processing_charge":"Yes","date_published":"2026-05-04T00:00:00Z","pmid":1,"OA_type":"gold","language":[{"iso":"eng"}],"file_date_updated":"2026-06-19T06:31:16Z","type":"journal_article","_id":"21986","chemrxivid":1,"has_accepted_license":"1","intvolume":"         6","abstract":[{"lang":"eng","text":"Over the past two decades, molecular electronics has made significant progress toward discovering nanoscale analogues of conventional electronic components, largely enabled by the development of the scanning tunneling microscope-based break-junction (STM-BJ) technique. The STM-BJ technique enables precise and highly reproducible measurement of a molecule’s electronic transport properties, making it a powerful technique to explore physiochemical and electrochemical phenomena that are otherwise difficult to access. It has gained substantial popularity in the past 20 years, with experiments becoming increasingly diverse and sophisticated. Despite the wealth of literature, an accessible, practical guide to performing STM-BJ experiments and interpreting the data is largely absent. This tutorial includes a brief background into the development of STM-BJ measurements, followed by detailed explanations of instrumentation, data collection, statistical analysis, variations on standard experiments, and some troubleshooting methods. It is aimed at researchers looking to begin or improve STM-BJ studies in their laboratories, graduate students and postdoctoral researchers learning the technique, and readers seeking to critically evaluate the growing body of STM-BJ literature."}],"external_id":{"pmid":["42221941"],"chemrxivid":["10.26434/chemrxiv.15000474/v1"]},"PlanS_conform":"1","acknowledgement":"We thank Michael Inkpen, Timothy Su, Masha Kamenetska, and Wanzhuo Shi for comments and Jyotisman Hazarika for data collection. This work was supported in part by the National Science Foundation (NSF-DMR 2241180) and by the Institute of Science and Technology Austria.","publication_identifier":{"eissn":["2694-2445"]},"date_updated":"2026-06-22T06:19:21Z","year":"2026","date_created":"2026-06-10T07:38:41Z","publication":"ACS Physical Chemistry Au","oa":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","corr_author":"1","department":[{"_id":"LaVe"}],"quality_controlled":"1","doi":"10.1021/acsphyschemau.6c00026","OA_place":"publisher","status":"public","ddc":["540"],"issue":"3","article_type":"original","month":"05","oa_version":"Published Version","DOAJ_listed":"1","scopus_import":"1","citation":{"ieee":"E. York and L. Venkataraman, “Scanning tunneling microscope-based break-junction technique - A tutorial,” <i>ACS Physical Chemistry Au</i>, vol. 6, no. 3. American Chemical Society, pp. 408–424, 2026.","apa":"York, E., &#38; Venkataraman, L. (2026). Scanning tunneling microscope-based break-junction technique - A tutorial. <i>ACS Physical Chemistry Au</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/acsphyschemau.6c00026\">https://doi.org/10.1021/acsphyschemau.6c00026</a>","short":"E. York, L. Venkataraman, ACS Physical Chemistry Au 6 (2026) 408–424.","ama":"York E, Venkataraman L. Scanning tunneling microscope-based break-junction technique - A tutorial. <i>ACS Physical Chemistry Au</i>. 2026;6(3):408-424. doi:<a href=\"https://doi.org/10.1021/acsphyschemau.6c00026\">10.1021/acsphyschemau.6c00026</a>","mla":"York, Emma, and Latha Venkataraman. “Scanning Tunneling Microscope-Based Break-Junction Technique - A Tutorial.” <i>ACS Physical Chemistry Au</i>, vol. 6, no. 3, American Chemical Society, 2026, pp. 408–24, doi:<a href=\"https://doi.org/10.1021/acsphyschemau.6c00026\">10.1021/acsphyschemau.6c00026</a>.","ista":"York E, Venkataraman L. 2026. Scanning tunneling microscope-based break-junction technique - A tutorial. ACS Physical Chemistry Au. 6(3), 408–424.","chicago":"York, Emma, and Latha Venkataraman. “Scanning Tunneling Microscope-Based Break-Junction Technique - A Tutorial.” <i>ACS Physical Chemistry Au</i>. American Chemical Society, 2026. <a href=\"https://doi.org/10.1021/acsphyschemau.6c00026\">https://doi.org/10.1021/acsphyschemau.6c00026</a>."},"file":[{"creator":"dernst","success":1,"checksum":"1dc16bdfb1c1cd3acde802f4350cb42a","relation":"main_file","access_level":"open_access","file_size":11251172,"file_name":"2026_ACSPhysChem_York.pdf","date_created":"2026-06-19T06:31:16Z","date_updated":"2026-06-19T06:31:16Z","file_id":"22020","content_type":"application/pdf"}],"page":"408-424","publication_status":"published","publisher":"American Chemical Society","volume":6,"author":[{"full_name":"York, Emma","last_name":"York","first_name":"Emma","id":"08dde91e-8e0a-11f0-9d7d-9e8d80864f16"},{"last_name":"Venkataraman","full_name":"Venkataraman, Latha","id":"9ebb78a5-cc0d-11ee-8322-fae086a32caf","first_name":"Latha","orcid":"0000-0002-6957-6089"}],"day":"04"},{"OA_place":"publisher","doi":"10.1016/j.xgen.2026.101277","quality_controlled":"1","month":"06","article_type":"original","oa_version":"Published Version","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1016/j.xgen.2026.101277"}],"status":"public","article_number":"101277","citation":{"ieee":"I. Krätschmer <i>et al.</i>, “Separating direct, indirect, and parent-of-origin genetic effects in the human population,” <i>Cell Genomics</i>. Elsevier.","ama":"Krätschmer I, Hegemann L, Hofmeister RJ, et al. Separating direct, indirect, and parent-of-origin genetic effects in the human population. <i>Cell Genomics</i>. doi:<a href=\"https://doi.org/10.1016/j.xgen.2026.101277\">10.1016/j.xgen.2026.101277</a>","mla":"Krätschmer, Ilse, et al. “Separating Direct, Indirect, and Parent-of-Origin Genetic Effects in the Human Population.” <i>Cell Genomics</i>, 101277, Elsevier, doi:<a href=\"https://doi.org/10.1016/j.xgen.2026.101277\">10.1016/j.xgen.2026.101277</a>.","chicago":"Krätschmer, Ilse, Laura Hegemann, Robin J. Hofmeister, Elizabeth C. Corfield, Mahdi Mahmoudi, Olivier Delaneau, Ole A. Andreassen, et al. “Separating Direct, Indirect, and Parent-of-Origin Genetic Effects in the Human Population.” <i>Cell Genomics</i>. Elsevier, n.d. <a href=\"https://doi.org/10.1016/j.xgen.2026.101277\">https://doi.org/10.1016/j.xgen.2026.101277</a>.","ista":"Krätschmer I, Hegemann L, Hofmeister RJ, Corfield EC, Mahmoudi M, Delaneau O, Andreassen OA, Campbell A, Hayward C, Marioni RE, Ystrom E, Havdahl A, Robinson MR. Separating direct, indirect, and parent-of-origin genetic effects in the human population. Cell Genomics., 101277.","short":"I. Krätschmer, L. Hegemann, R.J. Hofmeister, E.C. Corfield, M. Mahmoudi, O. Delaneau, O.A. Andreassen, A. Campbell, C. Hayward, R.E. Marioni, E. Ystrom, A. Havdahl, M.R. Robinson, Cell Genomics (n.d.).","apa":"Krätschmer, I., Hegemann, L., Hofmeister, R. J., Corfield, E. C., Mahmoudi, M., Delaneau, O., … Robinson, M. R. (n.d.). Separating direct, indirect, and parent-of-origin genetic effects in the human population. <i>Cell Genomics</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.xgen.2026.101277\">https://doi.org/10.1016/j.xgen.2026.101277</a>"},"publication_status":"inpress","DOAJ_listed":"1","scopus_import":"1","author":[{"full_name":"Krätschmer, Ilse","last_name":"Krätschmer","orcid":"0000-0002-5636-9259","first_name":"Ilse","id":"30d4014e-7753-11eb-b44b-db6d61112e73"},{"full_name":"Hegemann, Laura","last_name":"Hegemann","first_name":"Laura"},{"last_name":"Hofmeister","full_name":"Hofmeister, Robin J.","first_name":"Robin J."},{"first_name":"Elizabeth C.","last_name":"Corfield","full_name":"Corfield, Elizabeth C."},{"first_name":"Mahdi","last_name":"Mahmoudi","full_name":"Mahmoudi, Mahdi"},{"last_name":"Delaneau","full_name":"Delaneau, Olivier","first_name":"Olivier"},{"full_name":"Andreassen, Ole A.","last_name":"Andreassen","first_name":"Ole A."},{"first_name":"Archie","last_name":"Campbell","full_name":"Campbell, Archie"},{"last_name":"Hayward","full_name":"Hayward, Caroline","first_name":"Caroline"},{"first_name":"Riccardo E.","last_name":"Marioni","full_name":"Marioni, Riccardo E."},{"first_name":"Eivind","last_name":"Ystrom","full_name":"Ystrom, Eivind"},{"first_name":"Alexandra","full_name":"Havdahl, Alexandra","last_name":"Havdahl"},{"full_name":"Robinson, Matthew Richard","last_name":"Robinson","orcid":"0000-0001-8982-8813","id":"E5D42276-F5DA-11E9-8E24-6303E6697425","first_name":"Matthew Richard"}],"day":"09","project":[{"name":"Improving estimation and prediction of common complex disease risk","_id":"9B8D11D6-BA93-11EA-9121-9846C619BF3A","grant_number":"PCEGP3_181181"}],"publisher":"Elsevier","OA_type":"gold","language":[{"iso":"eng"}],"title":"Separating direct, indirect, and parent-of-origin genetic effects in the human population","article_processing_charge":"Yes","pmid":1,"date_published":"2026-06-09T00:00:00Z","acknowledged_ssus":[{"_id":"ScienComp"}],"_id":"21987","type":"journal_article","publication_identifier":{"eissn":["2666-979X"]},"acknowledgement":"We thank Zoltan Kutalik, Peter Visscher, and members of the Robinson group at ISTA for their comments, which improved this manuscript. This work was funded by an SNSF Eccellenza Grant to M.R.R. (PCEGP3-181181) and by core funding from the Institute of Science and Technology Austria.\r\nThe Norwegian Mother, Father, and Child Cohort Study is supported by the Norwegian Ministry of Health and Care Services and the Ministry of Education and Research. We are grateful to all the participating families in Norway who take part in this on-going cohort study. We thank the Norwegian Institute of Public Health (NIPH) for generating high-quality genomic data. The research is part of the HARVEST collaboration, supported by the Research Council of Norway (#229624). We also thank the NORMENT Center for providing genotype data, funded by the Research Council of Norway (#223273), South East Norway Health Authorities, and Stiftelsen Kristian Gerhard Jebsen, and in collaboration with deCODE Genetics. We further thank the Center for Diabetes Research, the University of Bergen for providing genotype data funded by the ERC AdG project SELECTionPREDISPOSED, Stiftelsen Kristian Gerhard Jebsen, Trond Mohn Foundation, the Research Council of Norway, the Novo Nordisk Foundation, the University of Bergen, and the Western Norway Health Authorities. The MoBa work was performed on the TSD (Tjeneste for Sensitive Data) facilities, owned by the University of Oslo, operated and developed by the TSD service group at the University of Oslo, IT Department (USIT, tsd-drift@usit.uio.no). E.Y. is supported by the European Union (grant numbers 101045526 and 101073237) and the Research Council of Norway (grant numbers 336078, 288083, and 331640).\r\nWe would like to acknowledge the participants and investigators of the Generation Scotland Cohort study. Generation Scotland received core support from the Chief Scientist Office of the Scottish Government Health Directorates (CZD/16/6) and the Scottish Funding Council (HR03006). Genotyping and methylation typing of the GS:SFHS samples was carried out by the Genetics Core Laboratory at the Wellcome Trust Clinical Research Facility, Edinburgh, Scotland and was funded by the Medical Research Council UK and the Wellcome Trust (Wellcome Trust Strategic Award “STratifying Resilience and Depression Longitudinally” [STRADL] ref. 104036/Z/14/Z).\r\nWe would like to thank and acknowledge the participants and investigators of the Estonian Biobank (EstBB) study. The research was conducted using the Estonian Center of Genomics/Roadmap II funded by the Estonian Research Council (project number TT17).\r\nNorwegian analyses were performed on resources provided by Sigma2 - the National Infrastructure for High-Performance Computing and Data Storage in Norway. Estonian Data analysis was carried out in the High-Performance Computing Center cloud provided by University of Tartu. Analysis of the Generation Scotland data and the summary statistics obtained from the other analyses was conducted at IST Austria and is supported by the Scientific Service Units (SSU) of IST Austria through resources provided by Scientific Computing (SciComp).","publication":"Cell Genomics","date_created":"2026-06-10T07:39:08Z","year":"2026","date_updated":"2026-06-19T07:00:47Z","abstract":[{"lang":"eng","text":"We introduce JODIE, a genetic joint modeling approach that estimates how DNA loci influence human traits by partitioning genetic effects into four components: direct effects (from a child’s alleles), indirect maternal and paternal effects (from parents’ alleles), and parent-of-origin (PofO) effects (dependent on parental transmission of alleles), while uniquely accounting for assortative mating. We analyze 30,000 child-mother-father trios from the Estonian Biobank and the Norwegian Mother, Father, and Child Cohort, focusing on height, body mass index, and childhood educational test scores. We find direct effects to be the largest contributor to trait variation, but combined, indirect parental and PofO effects are similarly substantial. We support our results by within-family genome-wide association testing and identify 276 independently associated DNA regions with a complex interplay between direct, indirect, and PofO effects. By joint modeling, we show that direct, indirect, and PofO effects collectively shape human phenotypic variation across loci genome-wide."}],"external_id":{"pmid":["40909755"]},"department":[{"_id":"MaRo"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","corr_author":"1","oa":1},{"date_created":"2026-06-13T16:57:07Z","publication":"bioRxiv","date_updated":"2026-06-19T07:14:01Z","year":"2026","acknowledgement":"We would like to thank Dr. Yvon Jaillais (ENS, Lyon) for sharing MAKR2 materials. This research was supported by the Scientific Service Units (SSU) of ISTA through resources provided by the Imaging & Optics Facility (IOF) and the Lab Support Facility (LSF). The research in the Friml group leading to these results was funded by the European Research Council (ERC): 101142681 CYNIPS; and the Austrian Science Fund (FWF): I 6123-B and P 37051-B. Ewa Mazur was supported by the National Science Centre (NCN), Poland, under the OPUS call in the WEAVE programme: 2021/43/I/NZ1/01835.","abstract":[{"lang":"eng","text":"Adaptive plant development is orchestrated, among others, by directional, intercellular transport of the phytohormone auxin. Self-organizing development, such as flexible vasculature formation, depends on so-called auxin canalization, manifested by the gradual formation of auxin transport channels through feedback between auxin signalling and transport. Herein, we identify MAKR6 as an important, novel component in this feedback. MAKR6 expression accumulates strongly in vascular cells and is tightly regulated by auxin via the Aux/IAA-ARF-WRKY23 transcriptional network. MAKR6 is required for auxin canalization-dependent processes, including leaf venation, vasculature regeneration, and de novo auxin channel formation from local auxin sources. Mechanistically, MAKR6 interacts with the PIN1 auxin transporter, modulating its trafficking and polarization. MAKR6 also associates with and integrates two key receptor-like kinase complexes involved in canalization, TMK1/4 and the CAMEL-CANAR. Together, our study establishes MAKR6 as a multifaceted regulator that couples transcriptional auxin signalling to PIN1 repolarization and coordinates multiple RLK-mediated signalling pathways during canalization. This provides mechanistic insights into auxin canalization and exemplifies a framework for exploring similar regulatory nodes in other developmental contexts."}],"department":[{"_id":"GradSch"},{"_id":"JiFr"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","corr_author":"1","oa":1,"language":[{"iso":"eng"}],"OA_type":"green","date_published":"2026-05-30T00:00:00Z","title":"MAKR6 integrates TMK and CAMEL/CANAR signalling for auxin canalization in Arabidopsis","article_processing_charge":"No","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","image":"/images/cc_by_nc_nd.png","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","short":"CC BY-NC-ND (4.0)"},"has_accepted_license":"1","_id":"21994","type":"preprint","publication_status":"submitted","citation":{"mla":"Ge, Zengxiang, et al. “MAKR6 Integrates TMK and CAMEL/CANAR Signalling for Auxin Canalization in Arabidopsis.” <i>BioRxiv</i>, doi:<a href=\"https://doi.org/10.1101/2025.10.07.680881\">10.1101/2025.10.07.680881</a>.","ama":"Ge Z, Koczka L, Mazur E, et al. MAKR6 integrates TMK and CAMEL/CANAR signalling for auxin canalization in Arabidopsis. <i>bioRxiv</i>. doi:<a href=\"https://doi.org/10.1101/2025.10.07.680881\">10.1101/2025.10.07.680881</a>","chicago":"Ge, Zengxiang, Lilla Koczka, Ewa Mazur, Gergely Molnar, Dmitrii Vladimirtsev, Nada Kassem, Sara Ait Ikene, Lukas Fiedler, and Jiří Friml. “MAKR6 Integrates TMK and CAMEL/CANAR Signalling for Auxin Canalization in Arabidopsis.” <i>BioRxiv</i>, n.d. <a href=\"https://doi.org/10.1101/2025.10.07.680881\">https://doi.org/10.1101/2025.10.07.680881</a>.","ista":"Ge Z, Koczka L, Mazur E, Molnar G, Vladimirtsev D, Kassem N, Ait Ikene S, Fiedler L, Friml J. MAKR6 integrates TMK and CAMEL/CANAR signalling for auxin canalization in Arabidopsis. bioRxiv, <a href=\"https://doi.org/10.1101/2025.10.07.680881\">10.1101/2025.10.07.680881</a>.","short":"Z. Ge, L. Koczka, E. Mazur, G. Molnar, D. Vladimirtsev, N. Kassem, S. Ait Ikene, L. Fiedler, J. Friml, BioRxiv (n.d.).","apa":"Ge, Z., Koczka, L., Mazur, E., Molnar, G., Vladimirtsev, D., Kassem, N., … Friml, J. (n.d.). MAKR6 integrates TMK and CAMEL/CANAR signalling for auxin canalization in Arabidopsis. <i>bioRxiv</i>. <a href=\"https://doi.org/10.1101/2025.10.07.680881\">https://doi.org/10.1101/2025.10.07.680881</a>","ieee":"Z. Ge <i>et al.</i>, “MAKR6 integrates TMK and CAMEL/CANAR signalling for auxin canalization in Arabidopsis,” <i>bioRxiv</i>. ."},"scopus_import":"1","day":"30","author":[{"orcid":"0000-0001-9381-3577","id":"f43371a3-09ff-11eb-8013-bd0c6a2f6de8","first_name":"Zengxiang","last_name":"Ge","full_name":"Ge, Zengxiang"},{"full_name":"Koczka, Lilla","last_name":"Koczka","first_name":"Lilla"},{"full_name":"Mazur, Ewa","last_name":"Mazur","first_name":"Ewa"},{"id":"34F1AF46-F248-11E8-B48F-1D18A9856A87","first_name":"Gergely","last_name":"Molnar","full_name":"Molnar, Gergely"},{"first_name":"Dmitrii","id":"60466724-5355-11ee-ae5a-fa55e8f99c3d","last_name":"Vladimirtsev","full_name":"Vladimirtsev, Dmitrii"},{"first_name":"Nada","full_name":"Kassem, Nada","last_name":"Kassem"},{"id":"6a0bb896-6bad-11f1-9bef-906e9eb76034","first_name":"Sara","full_name":"Ait Ikene, Sara","last_name":"Ait Ikene"},{"first_name":"Lukas","id":"7c417475-8972-11ed-ae7b-8b674ca26986","last_name":"Fiedler","full_name":"Fiedler, Lukas"},{"last_name":"Friml","full_name":"Friml, Jiří","id":"4159519E-F248-11E8-B48F-1D18A9856A87","first_name":"Jiří","orcid":"0000-0002-8302-7596"}],"project":[{"grant_number":"101142681","_id":"8f347782-16d5-11f0-9cad-8c19706ee739","name":"Cyclic nucleotides as second messengers in plants"},{"grant_number":"I06123","_id":"bd76d395-d553-11ed-ba76-f678c14f9033","name":"Peptide receptors for auxin canalization in Arabidopsis"},{"name":"Guanylate cyclase activity of TIR1/AFBs auxin receptors","_id":"7bcece63-9f16-11ee-852c-ae94e099eeb6","grant_number":"P37051"}],"OA_place":"repository","doi":"10.1101/2025.10.07.680881","oa_version":"Preprint","month":"05","ddc":["580"],"status":"public","main_file_link":[{"url":"https://doi.org/10.1101/2025.10.07.680881","open_access":"1"}]},{"quality_controlled":"1","doi":"10.1007/s44393-026-00024-0","OA_place":"publisher","status":"public","ddc":["550"],"article_number":"27","researchdata_availability":"no","month":"06","article_type":"original","oa_version":"None","scopus_import":"1","DOAJ_listed":"1","file":[{"file_id":"22109","date_updated":"2026-06-22T07:21:04Z","date_created":"2026-06-22T07:21:04Z","content_type":"application/pdf","access_level":"open_access","file_size":13308662,"relation":"main_file","file_name":"2026_SOLA_Fujinami.pdf","success":1,"checksum":"19a217b038756abf44bc49939a01e33c","creator":"dernst"}],"citation":{"chicago":"Fujinami, Hatsuki, Nobuhiro Takahashi, Hironari Kanamori, Yota Sato, Sojiro Sunako, Masaya Kato, Atsushi Higuchi, et al. “Multiscale Aspects of an Extreme Precipitation Event over Nepal in September 2024.” <i>Scientific Online Letters on the Atmosphere</i>. Springer Nature, 2026. <a href=\"https://doi.org/10.1007/s44393-026-00024-0\">https://doi.org/10.1007/s44393-026-00024-0</a>.","ama":"Fujinami H, Takahashi N, Kanamori H, et al. Multiscale aspects of an extreme precipitation event over Nepal in September 2024. <i>Scientific Online Letters on the Atmosphere</i>. 2026;22. doi:<a href=\"https://doi.org/10.1007/s44393-026-00024-0\">10.1007/s44393-026-00024-0</a>","ista":"Fujinami H, Takahashi N, Kanamori H, Sato Y, Sunako S, Kato M, Higuchi A, Kadel I, Shrestha D, Kayastha RB, Fujita K. 2026. Multiscale aspects of an extreme precipitation event over Nepal in September 2024. Scientific Online Letters on the Atmosphere. 22, 27.","mla":"Fujinami, Hatsuki, et al. “Multiscale Aspects of an Extreme Precipitation Event over Nepal in September 2024.” <i>Scientific Online Letters on the Atmosphere</i>, vol. 22, 27, Springer Nature, 2026, doi:<a href=\"https://doi.org/10.1007/s44393-026-00024-0\">10.1007/s44393-026-00024-0</a>.","apa":"Fujinami, H., Takahashi, N., Kanamori, H., Sato, Y., Sunako, S., Kato, M., … Fujita, K. (2026). Multiscale aspects of an extreme precipitation event over Nepal in September 2024. <i>Scientific Online Letters on the Atmosphere</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s44393-026-00024-0\">https://doi.org/10.1007/s44393-026-00024-0</a>","short":"H. Fujinami, N. Takahashi, H. Kanamori, Y. Sato, S. Sunako, M. Kato, A. Higuchi, I. Kadel, D. Shrestha, R.B. Kayastha, K. Fujita, Scientific Online Letters on the Atmosphere 22 (2026).","ieee":"H. Fujinami <i>et al.</i>, “Multiscale aspects of an extreme precipitation event over Nepal in September 2024,” <i>Scientific Online Letters on the Atmosphere</i>, vol. 22. Springer Nature, 2026."},"publication_status":"published","publisher":"Springer Nature","volume":22,"author":[{"first_name":"Hatsuki","full_name":"Fujinami, Hatsuki","last_name":"Fujinami"},{"full_name":"Takahashi, Nobuhiro","last_name":"Takahashi","first_name":"Nobuhiro"},{"full_name":"Kanamori, Hironari","last_name":"Kanamori","first_name":"Hironari"},{"last_name":"Sato","full_name":"Sato, Yota","first_name":"Yota","id":"daa9e17a-f2c2-11ef-b968-915e836dea45"},{"last_name":"Sunako","full_name":"Sunako, Sojiro","first_name":"Sojiro"},{"last_name":"Kato","full_name":"Kato, Masaya","first_name":"Masaya"},{"full_name":"Higuchi, Atsushi","last_name":"Higuchi","first_name":"Atsushi"},{"last_name":"Kadel","full_name":"Kadel, Indira","first_name":"Indira"},{"first_name":"Dibas","full_name":"Shrestha, Dibas","last_name":"Shrestha"},{"full_name":"Kayastha, Rijan B.","last_name":"Kayastha","first_name":"Rijan B."},{"last_name":"Fujita","full_name":"Fujita, Koji","first_name":"Koji"}],"day":"04","title":"Multiscale aspects of an extreme precipitation event over Nepal in September 2024","article_processing_charge":"Yes","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"date_published":"2026-06-04T00:00:00Z","OA_type":"gold","language":[{"iso":"eng"}],"file_date_updated":"2026-06-22T07:21:04Z","dataavailabilitystatement":"Daily rainfall data across Nepal were obtained from the Department of Hydrology and Meteorology, Kathmandu, Nepal (https://dhm.gov.np/). Precipitation data from Pyramid observatory are available from [https://glacioclim.osug.fr/Donnees-du-Nepal-region-du-Khumbu](https:/glacioclim.osug.fr/Donnees-du-Nepal-region-du-Khumbu) . Precipitation data from rain gauges in Rolwaling valley are available from https://doi.org/10.5281/zenodo.18081206. NOAA’s Climate Prediction Center provided daily OLR data ( [https://psl.noaa.gov/data/gridded/data.cpc\\_blended\\_olr-2.5 deg.html](https:/psl.noaa.gov/data/gridded/data.cpc_blended_olr-2.5 deg.html) ). We used infrared brightness temperature data from MSG2 (Meteosat 9)-IODC. The Center for Environmental Remote Sensing (CEReS), Chiba University, archived and provided the data (https://ceres.chiba-u.jp/en/ top-eng/). The GPM DPR products are available from the Japan Aerospace Exploration Agency (JAXA) G-Portal website ( [https://gportal.jaxa.jp/gpr/](https:/gportal.jaxa.jp/gpr) ). The ERA5 data are available from the Copernicus climate-change service (C3S) climate data store (https://doi.org/10.24381/cds.bd0915c6). GMTED2010 data are available from the US Geological Survey (https://topotools.cr.usgs.gov/gmted\\_viewer/viewer.htm).","type":"journal_article","_id":"21995","has_accepted_license":"1","intvolume":"        22","abstract":[{"lang":"eng","text":"On 26–28 September 2024, torrential rainfall struck Nepal during the late monsoon season, causing flooding, landslides and extensive damage. This study examined the multiscale processes contributing to this extreme precipitation event, focusing on intraseasonal oscillations, synoptic-scale circulations, and mesoscale cloud/precipitation systems. A quasi-biweekly intraseasonal oscillation dominated over South Asia during the event, featuring a monsoon low-pressure system over the Indian Peninsula and an anticyclone to its east, both propagating westward. The pressure gradient between them sustained strong southerly moisture transport toward the Himalayas, establishing a persistently humid environment and orographic lift along the southern slopes. In contrast to reports of previous extreme precipitation events in Nepal, the atmospheric circulation responsible for the 2024 event was primarily of tropical origin, with minimal influence from the midlatitudes. Characteristic mesoscale cloud/precipitation systems also developed around the Himalayas. The highest daily precipitation during the event was recorded on 27 September; stratiform systems with relatively modest storm top heights developed over the southern slopes, generating surface precipitation rates of > 100 mm h− 1 through warm-rain processes. Rain gauges across the glacierized basin (3500–5000 m asl) recorded exceptionally high daily and hourly precipitation rates, highlighting the extension of intense rainfall to unusually high elevations."}],"PlanS_conform":"1","publication_identifier":{"eissn":["1349-6476"]},"acknowledgement":"This work was supported by the Japan Society for the Promotion of Science (JSPS) (KAKENHI Grants: 22H00176, 22H00033, 22H00037, and 23KK0064). It was partly supported by the 4th Research Announcement on the Earth Observations of the Japan Aerospace Exploration Agency (JAXA). It was partly carried out under the joint research program of Institute for Space–Earth Environmental Research, Nagoya University and as a joint research program with the Center for Environmental Remote Sensing (CEReS), Chiba University (CJ25-43, 2025). We thank James Buxton MSc and Tina Tin PhD from Edanz (https://jp.edanz.com/ac), for editing a draft of this manuscript. The Japan Society for the Promotion of Science (JSPS) supports this work (KAKENHI Grants: 22H00176, 22H00033, 22H00037, and 23KK0064).","date_created":"2026-06-14T22:01:42Z","publication":"Scientific Online Letters on the Atmosphere","date_updated":"2026-06-22T11:26:52Z","year":"2026","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa":1,"supplementarymaterial":"yes","department":[{"_id":"FrPe"}]},{"date_published":"2026-06-10T00:00:00Z","pmid":1,"das_tickbox":"1","title":"NAD to the bone: How bacteria put phages under aRES-t … and how phages fight back","article_processing_charge":"No","language":[{"iso":"eng"}],"OA_type":"closed access","_id":"21996","type":"journal_article","intvolume":"        34","external_id":{"pmid":["42269584"]},"abstract":[{"lang":"eng","text":"In this issue of Cell Host & Microbe, Osterman et al. discover aRES,1 a new family of bacterial immune proteins that deplete cellular NAD+, generating cleavage products that cannot be utilized by canonical phage NAD+ regeneration pathways. They identify the invader-specific trigger for aRES and characterize two distinct evolutionary countermeasures employed by phages to resist aRES."}],"year":"2026","date_updated":"2026-06-22T07:11:28Z","date_created":"2026-06-14T22:01:42Z","publication":"Cell Host & Microbe","acknowledgement":"This work was supported by the Austrian Science Fund (FWF) (10.55776/PAT1617625).","publication_identifier":{"issn":["1931-3128"],"eissn":["1934-6069"]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","corr_author":"1","department":[{"_id":"JaBr"}],"quality_controlled":"1","doi":"10.1016/j.chom.2026.05.013","issue":"6","status":"public","oa_version":"None","article_type":"original","month":"06","scopus_import":"1","page":"978-980","publication_status":"published","citation":{"apa":"Williams-Jones, D., &#38; Bravo, J. P. K. (2026). NAD to the bone: How bacteria put phages under aRES-t … and how phages fight back. <i>Cell Host &#38; Microbe</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.chom.2026.05.013\">https://doi.org/10.1016/j.chom.2026.05.013</a>","short":"D. Williams-Jones, J.P.K. Bravo, Cell Host &#38; Microbe 34 (2026) 978–980.","chicago":"Williams-Jones, Daniel, and Jack Peter Kelly Bravo. “NAD to the Bone: How Bacteria Put Phages under ARES-t … and How Phages Fight Back.” <i>Cell Host &#38; Microbe</i>. Elsevier, 2026. <a href=\"https://doi.org/10.1016/j.chom.2026.05.013\">https://doi.org/10.1016/j.chom.2026.05.013</a>.","ama":"Williams-Jones D, Bravo JPK. NAD to the bone: How bacteria put phages under aRES-t … and how phages fight back. <i>Cell Host &#38; Microbe</i>. 2026;34(6):978-980. doi:<a href=\"https://doi.org/10.1016/j.chom.2026.05.013\">10.1016/j.chom.2026.05.013</a>","mla":"Williams-Jones, Daniel, and Jack Peter Kelly Bravo. “NAD to the Bone: How Bacteria Put Phages under ARES-t … and How Phages Fight Back.” <i>Cell Host &#38; Microbe</i>, vol. 34, no. 6, Elsevier, 2026, pp. 978–80, doi:<a href=\"https://doi.org/10.1016/j.chom.2026.05.013\">10.1016/j.chom.2026.05.013</a>.","ista":"Williams-Jones D, Bravo JPK. 2026. NAD to the bone: How bacteria put phages under aRES-t … and how phages fight back. Cell Host &#38; Microbe. 34(6), 978–980.","ieee":"D. Williams-Jones and J. P. K. Bravo, “NAD to the bone: How bacteria put phages under aRES-t … and how phages fight back,” <i>Cell Host &#38; Microbe</i>, vol. 34, no. 6. Elsevier, pp. 978–980, 2026."},"volume":34,"publisher":"Elsevier","day":"10","author":[{"full_name":"Williams-Jones, Daniel","last_name":"Williams-Jones","first_name":"Daniel","id":"128eaab9-b327-11f0-bdbe-e02d5abac73b"},{"full_name":"Bravo, Jack Peter Kelly","last_name":"Bravo","first_name":"Jack Peter Kelly","id":"96aecfa5-8931-11ee-af30-aa6a5d6eee0e","orcid":"0000-0003-0456-0753"}]},{"_id":"21997","type":"journal_article","has_accepted_license":"1","intvolume":"      1004","title":"A path to constraints on common envelope ejection in massive binaries: Full evolutionary reconstruction of three Black Hole X-ray binaries","article_processing_charge":"Yes","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"date_published":"2026-06-10T00:00:00Z","OA_type":"gold","language":[{"iso":"eng"}],"file_date_updated":"2026-06-19T09:56:29Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa":1,"department":[{"_id":"YlGo"}],"abstract":[{"lang":"eng","text":"The massive binary common envelope (CE) phase plays a pivotal role in the formation of close black hole (BH)/neutron star binaries, yet significant uncertainties remain in our understanding of this process. In this study, we aim to constrain the massive binary CE phase by systematically reconstructing three observed BH X-ray binaries (BHXBs): GRO J1655-40, SAX J1819.3-2525, and 4U 1543-47. Through comprehensive binary evolution simulations and parametric supernova modeling, we establish lower limits for the CE efficiency parameters under different energy considerations within the standard energy formalism. Specifically, we derive minimum values for three cases: α0.5U and αU, representing CE efficiencies with half and all of the internal energy contributing to the envelope ejection, respectively, and αH, accounting for the envelope’s enthalpy. Our analysis reveals that the self-consistent formation of these three BHXBs requires CE efficiency parameters satisfying α0.5U ≳ 6.7, αU ≳ 4.2, and αH ≳ 1.7. Notably, we find no viable solutions with CE efficiency values below unity, even when considering the most extreme scenarios, in which the envelope binding energy is significantly reduced through enthalpy inclusion. Our results strongly imply that either additional energy sources are required or the formalism itself must be revised. Furthermore, we quantitatively assess the impact of BH natal kicks on our results. A key finding is that 4U 1543-47’s formation requires substantial natal kicks (≳50 km s−1), as lower kick velocities are incompatible with isolated binary evolution."}],"PlanS_conform":"1","external_id":{"arxiv":["2604.10440"]},"publication_identifier":{"eissn":["1538-4357"],"issn":["0004-637X"]},"arxiv":1,"acknowledgement":"We deeply thank the referee for a very careful reading and constructive comments that have led to the improvement of the manuscript. The authors are grateful to Poshak Gandhi for his valuable suggestions and feedback on this work. This work is supported by the Natural Science Foundation of China (grant Nos. 12125303, 12525304, 12288102, 12473034, 12103028, 12333008, 12422305, 12090040/3, 12273105, 11703081, 11422324, 12073070, and 12173081), the CAS Project for Young Scientists in Basic Research (YSBR-148), the Strategic Priority Research Program of the Chinese Academy of Sciences (grant Nos. XDB1160303, XDB1160201, and XDB1160000), the National Key R&D Program of China (grant Nos. 2021YFA1600403 and 2021YFA1600400), the Key Research Program of Frontier Sciences of CAS (No. ZDBS-LY-7005), the “CAS Light of West China”, the Yunnan Revitalization Talent Support Program-Science & Technology Champion Project (No. 202305AB350003) and Young Talent Project, the International Centre of Supernovae (ICESUN), Yunnan Key Laboratory of Supernova Research (Nos. 202302AN360001 and 202201BC070003), Yunnan Fundamental Research Projects (No. 202401AT070139), and the Natural Science Foundation of Henan Province (No. 242300420944). X.C. acknowledges the New Cornerstone Science Foundation through the XPLORER PRIZE. The authors gratefully acknowledge the “PHOENIX Supercomputing Platform” jointly operated by the Binary Population Synthesis Group and the Stellar Astrophysics Group at Yunnan Observatories, Chinese Academy of Sciences.","publication":"The Astrophysical Journal","date_created":"2026-06-14T22:01:42Z","year":"2026","date_updated":"2026-06-19T09:58:52Z","status":"public","issue":"1","ddc":["520"],"article_number":"31","month":"06","article_type":"original","oa_version":"Published Version","doi":"10.3847/1538-4357/ae66fd","quality_controlled":"1","OA_place":"publisher","publisher":"IOP Publishing","volume":1004,"author":[{"first_name":"Zhenwei","last_name":"Li","full_name":"Li, Zhenwei"},{"full_name":"Wei, Dandan","last_name":"Wei","first_name":"Dandan","id":"5dd129bd-0601-11ef-b325-833284687b76"},{"first_name":"Shi","last_name":"Jia","full_name":"Jia, Shi"},{"first_name":"Hailiang","full_name":"Chen, Hailiang","last_name":"Chen"},{"first_name":"Hongwei","full_name":"Ge, Hongwei","last_name":"Ge"},{"first_name":"Zhuo","full_name":"Chen, Zhuo","last_name":"Chen"},{"first_name":"Yangyang","full_name":"Zhang, Yangyang","last_name":"Zhang"},{"full_name":"Chen, Xuefei","last_name":"Chen","first_name":"Xuefei"},{"first_name":"Zhanwen","last_name":"Han","full_name":"Han, Zhanwen"}],"day":"10","scopus_import":"1","DOAJ_listed":"1","file":[{"content_type":"application/pdf","date_updated":"2026-06-19T09:56:29Z","file_id":"22099","date_created":"2026-06-19T09:56:29Z","file_name":"2026_AstrophysicalJour_Li.pdf","relation":"main_file","access_level":"open_access","file_size":3386217,"checksum":"bb76fbb51f8d2834cb79f19e7932e3bd","success":1,"creator":"dernst"}],"citation":{"ieee":"Z. Li <i>et al.</i>, “A path to constraints on common envelope ejection in massive binaries: Full evolutionary reconstruction of three Black Hole X-ray binaries,” <i>The Astrophysical Journal</i>, vol. 1004, no. 1. IOP Publishing, 2026.","mla":"Li, Zhenwei, et al. “A Path to Constraints on Common Envelope Ejection in Massive Binaries: Full Evolutionary Reconstruction of Three Black Hole X-Ray Binaries.” <i>The Astrophysical Journal</i>, vol. 1004, no. 1, 31, IOP Publishing, 2026, doi:<a href=\"https://doi.org/10.3847/1538-4357/ae66fd\">10.3847/1538-4357/ae66fd</a>.","ama":"Li Z, Wei D, Jia S, et al. A path to constraints on common envelope ejection in massive binaries: Full evolutionary reconstruction of three Black Hole X-ray binaries. <i>The Astrophysical Journal</i>. 2026;1004(1). doi:<a href=\"https://doi.org/10.3847/1538-4357/ae66fd\">10.3847/1538-4357/ae66fd</a>","chicago":"Li, Zhenwei, Dandan Wei, Shi Jia, Hailiang Chen, Hongwei Ge, Zhuo Chen, Yangyang Zhang, Xuefei Chen, and Zhanwen Han. “A Path to Constraints on Common Envelope Ejection in Massive Binaries: Full Evolutionary Reconstruction of Three Black Hole X-Ray Binaries.” <i>The Astrophysical Journal</i>. IOP Publishing, 2026. <a href=\"https://doi.org/10.3847/1538-4357/ae66fd\">https://doi.org/10.3847/1538-4357/ae66fd</a>.","ista":"Li Z, Wei D, Jia S, Chen H, Ge H, Chen Z, Zhang Y, Chen X, Han Z. 2026. A path to constraints on common envelope ejection in massive binaries: Full evolutionary reconstruction of three Black Hole X-ray binaries. The Astrophysical Journal. 1004(1), 31.","short":"Z. Li, D. Wei, S. Jia, H. Chen, H. Ge, Z. Chen, Y. Zhang, X. Chen, Z. Han, The Astrophysical Journal 1004 (2026).","apa":"Li, Z., Wei, D., Jia, S., Chen, H., Ge, H., Chen, Z., … Han, Z. (2026). A path to constraints on common envelope ejection in massive binaries: Full evolutionary reconstruction of three Black Hole X-ray binaries. <i>The Astrophysical Journal</i>. IOP Publishing. <a href=\"https://doi.org/10.3847/1538-4357/ae66fd\">https://doi.org/10.3847/1538-4357/ae66fd</a>"},"publication_status":"published"},{"oa_version":"Published Version","article_type":"original","month":"06","article_number":"L4","ddc":["520"],"issue":"1","status":"public","OA_place":"publisher","doi":"10.3847/2041-8213/ae6dae","quality_controlled":"1","day":"10","author":[{"last_name":"Chisholm","full_name":"Chisholm, John","first_name":"John"},{"full_name":"Berg, Danielle A.","last_name":"Berg","first_name":"Danielle A."},{"full_name":"Boylan-Kolchin, Michael","last_name":"Boylan-Kolchin","first_name":"Michael"},{"full_name":"De Graaff, Anna","last_name":"De Graaff","first_name":"Anna"},{"full_name":"Furtak, Lukas J.","last_name":"Furtak","first_name":"Lukas J."},{"first_name":"Vasily","last_name":"Kokorev","full_name":"Kokorev, Vasily"},{"first_name":"Jorryt J","id":"7439a258-f3c0-11ec-9501-9df22fe06720","orcid":"0000-0003-2871-127X","full_name":"Matthee, Jorryt J","last_name":"Matthee"},{"full_name":"Muñoz, Julian B.","last_name":"Muñoz","first_name":"Julian B."},{"first_name":"Rohan P.","last_name":"Naidu","full_name":"Naidu, Rohan P."},{"first_name":"Andreas A.C.","last_name":"Sander","full_name":"Sander, Andreas A.C."}],"volume":1004,"publisher":"IOP Publishing","publication_status":"published","citation":{"ieee":"J. Chisholm <i>et al.</i>, “Little Red Dots as globular clusters in formation,” <i>The Astrophysical Journal Letters</i>, vol. 1004, no. 1. IOP Publishing, 2026.","short":"J. Chisholm, D.A. Berg, M. Boylan-Kolchin, A. De Graaff, L.J. Furtak, V. Kokorev, J.J. Matthee, J.B. Muñoz, R.P. Naidu, A.A.C. Sander, The Astrophysical Journal Letters 1004 (2026).","apa":"Chisholm, J., Berg, D. A., Boylan-Kolchin, M., De Graaff, A., Furtak, L. J., Kokorev, V., … Sander, A. A. C. (2026). Little Red Dots as globular clusters in formation. <i>The Astrophysical Journal Letters</i>. IOP Publishing. <a href=\"https://doi.org/10.3847/2041-8213/ae6dae\">https://doi.org/10.3847/2041-8213/ae6dae</a>","chicago":"Chisholm, John, Danielle A. Berg, Michael Boylan-Kolchin, Anna De Graaff, Lukas J. Furtak, Vasily Kokorev, Jorryt J Matthee, Julian B. Muñoz, Rohan P. Naidu, and Andreas A.C. Sander. “Little Red Dots as Globular Clusters in Formation.” <i>The Astrophysical Journal Letters</i>. IOP Publishing, 2026. <a href=\"https://doi.org/10.3847/2041-8213/ae6dae\">https://doi.org/10.3847/2041-8213/ae6dae</a>.","mla":"Chisholm, John, et al. “Little Red Dots as Globular Clusters in Formation.” <i>The Astrophysical Journal Letters</i>, vol. 1004, no. 1, L4, IOP Publishing, 2026, doi:<a href=\"https://doi.org/10.3847/2041-8213/ae6dae\">10.3847/2041-8213/ae6dae</a>.","ista":"Chisholm J, Berg DA, Boylan-Kolchin M, De Graaff A, Furtak LJ, Kokorev V, Matthee JJ, Muñoz JB, Naidu RP, Sander AAC. 2026. Little Red Dots as globular clusters in formation. The Astrophysical Journal Letters. 1004(1), L4.","ama":"Chisholm J, Berg DA, Boylan-Kolchin M, et al. Little Red Dots as globular clusters in formation. <i>The Astrophysical Journal Letters</i>. 2026;1004(1). doi:<a href=\"https://doi.org/10.3847/2041-8213/ae6dae\">10.3847/2041-8213/ae6dae</a>"},"file":[{"checksum":"66949af6e620c8ef37de42688829a3e3","success":1,"creator":"dernst","content_type":"application/pdf","file_id":"22098","date_updated":"2026-06-19T09:45:21Z","date_created":"2026-06-19T09:45:21Z","file_name":"2026_AstrophysicalJourLetters_Chisholm.pdf","access_level":"open_access","relation":"main_file","file_size":919919}],"DOAJ_listed":"1","scopus_import":"1","intvolume":"      1004","has_accepted_license":"1","type":"journal_article","_id":"21998","language":[{"iso":"eng"}],"file_date_updated":"2026-06-19T09:45:21Z","OA_type":"gold","date_published":"2026-06-10T00:00:00Z","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"title":"Little Red Dots as globular clusters in formation","article_processing_charge":"Yes","department":[{"_id":"JoMa"}],"oa":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2026-06-19T09:50:33Z","year":"2026","date_created":"2026-06-14T22:01:42Z","publication":"The Astrophysical Journal Letters","acknowledgement":"We thank the referees for detailed and highly constructive reports that significantly improved the scope and breadth of the manuscript. J.C. thanks Hollis Akins, Volker Bromm, Rui Chaves-Marques, Steve Finkelstein, Karl Gebhardt, Keith Hawkins, Harley Katz, Stellar Offner, Daniel Schaerer, Grace Telford, and Jorick Vink for conversations that improved the Letter. A.d.G. acknowledges support from a Clay Fellowship awarded by the Smithsonian Astrophysical Observatory. M.B.K. acknowledges support from NSF grants AST-2108962 and AST-2408247; NASA grant 80NSSC22K0827; HST-GO-16686, HST-AR-17028, JWST-GO-03788, and JWST-AR-06278 from the Space Telescope Science Institute, which is operated by AURA, Inc., under NASA contract NAS5-26555; and from the Samuel T. and Fern Yanagisawa Regents Professorship in Astronomy at UT Austin. A.A.C.S. acknowledges support by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) in the form of an Emmy Noether Research Group—Project-ID 445674056 (SA4064/1-1, PI Sander). A.A.C.S. further acknowledges support from the Deutsches Zentrum für Luft und Raumfahrt (DLR) grant grants 50 OR 2509 (PI: A.A.C. Sander) and 50 OR 2306 (PI: V. Ramachandran/A.A.C. Sander) as well as from the Federal Ministry of Research, Technology, and Space (BMFTR) and the Baden-Württemberg Ministry of Science as part of the Excellence Strategy of the German Federal and State Governments. This project was cofunded by the European Union (Project 101183150—OCEANS).\r\n\r\nThis work is based in part on observations made with the NASA/ESA/CSA James Webb Space Telescope. The data were obtained from the Mikulski Archive for Space Telescopes at the Space Telescope Science Institute, which is operated by the Association of Universities for Research in Astronomy, Inc., under NASA contract NAS 5-03127 for JWST. These observations are associated with programs 1180, 1181, 1208, 1212, 1213, 1215, 1286, 1345, 1433, 2198, 2561, 2750, 2767, 4106, 4233, 5105, 5224, 6368, and 6585.","publication_identifier":{"eissn":["2041-8213"],"issn":["2041-8205"]},"arxiv":1,"external_id":{"arxiv":["2602.15935"]},"PlanS_conform":"1","abstract":[{"text":"Little Red Dots (LRDs), among the most enigmatic high-redshift discoveries by JWST, are commonly believed to be powered by accreting supermassive black holes. Here, we explore the possibility that these sources are globular clusters in formation, with rest-frame UV arising from a very young stellar population and rest-frame optical from a short-lived supermassive (>104 M⊙) star. The spectral profiles of LRDs are broadly consistent with this scenario, though the observed temperatures and bolometric luminosities favor emission reprocessed by optically thick continuum-driven winds not fully captured by current models. The LRD z ∼ 5−7 UV luminosity function naturally evolves, under standard evolutionary and mass-loss prescriptions, into a present-day mass function with a turnover at log10(M*/M⊙) = 5.3 and an exponential cutoff at high masses, consistent with local globular cluster populations. We estimate the total present-day number density of LRDs formed across all redshifts to be ≈0.3 Mpc−3, similar within uncertainties to local globular clusters. The observed LRD redshift range matches the age distribution of metal-poor globular clusters, without current LRD counterparts to the metal-rich population. If LRDs are globular clusters in formation, we predict chemical abundance patterns characteristic of multiple stellar populations, including enhanced He and N, and potential Na–O and Al–Mg anticorrelations. These results offer a local perspective to explore this surprisingly abundant population of distant sources, and a potential new window into extreme stellar astrophysics in the early Universe.","lang":"eng"}]},{"external_id":{"arxiv":["2509.20452"]},"PlanS_conform":"1","abstract":[{"lang":"eng","text":"JWST has revealed an abundance of supermassive black holes (BHs) in the early Universe, and yet the lowest mass seed BHs that gave rise to these populations remain elusive. Here, we present a systematic search for broad-line active galactic nuclei (AGNs) in some of the faintest high-z galaxies surveyed yet by combining ultra-deep JWST/NIRSpec G395M spectroscopy with the strong lensing aid in AS1063. By employing the profile of the [O iii]λ5007 emission lines as a template for narrow-line components and carefully cross-validating with mock observations, we identify a sample of 10 broad-line AGNs at 4.5 < z < 7.0 (eight secure, two tentative). The inferred BH masses from the broad Hα line explore the intermediate BH mass regime down to ∼105.5 M⊙. The stellar mass (M*) is estimated with a galaxy+AGN composite model, and we find the BH to stellar mass ratio spans down to MBH/M* ≲ 0.1%, unveiling populations on the empirical MBH–M* relation observed in the local Universe. We also derive the BH mass function and investigate its low-mass end at this epoch. While we confirm the agreement of our results with previous studies at MBH ≳ 106.5M⊙, we find the mass range of ∼105.5 M⊙ features an enhanced abundance with respect to the extrapolated best-fit Schechter function. Comparison with theoretical models suggests that a possible origin for this enhanced abundance is the direct-collapse BH formation, supporting the scenario that the direct collapse of massive gas clouds is a significant pathway for the earliest supermassive BHs."}],"date_created":"2026-06-14T22:01:43Z","publication":"The Astrophysical Journal","date_updated":"2026-06-22T11:34:52Z","year":"2026","publication_identifier":{"issn":["0004-637X"],"eissn":["1538-4357"]},"arxiv":1,"acknowledgement":"We thank the anonymous referee for insightful comments, which significantly improved the manuscript. We acknowledge Kohei Inayoshi for helpful discussions. This work is based on observations made with the NASA/ESA/CSA James Webb Space Telescope. The data were obtained from the Mikulski Archive for Space Telescopes at the Space Telescope Science Institute, which is operated by the Association of Universities for Research in Astronomy, Inc., under NASA contract NAS 5-03127 for JWST. The specific observations analyzed can be accessed via DOI: 10.17909/4byn-fe55 and 10.17909/v2y7-j922. These observations are associated with programs #3293 and #9223. S.F. and Q.F. acknowledge support from the Dunlap Institute, which is funded through an endowment established by the David Dunlap family and the University of Toronto. A.S.L. acknowledges support from the Knut and Alice Wallenberg Foundation. A.Z. acknowledges support by grant No. 2020750 from the United States-Israel Binational Science Foundation (BSF) and grant No. 2109066 from the United States National Science Foundation (NSF); and by the Israel Science Foundation grant No. 864/23.","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","supplementarymaterial":"yes","oa":1,"department":[{"_id":"JoMa"}],"date_published":"2026-06-01T00:00:00Z","title":"A GLIMPSE of intermediate mass Black Holes in the epoch of reionization: Witnessing the descendants of direct collapse?","article_processing_charge":"Yes","das_tickbox":"0","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"language":[{"iso":"eng"}],"file_date_updated":"2026-06-22T08:03:55Z","dataavailabilitystatement":"10.17909/4byn-fe55 and 10.17909/v2y7-j922 used with Software: LMFIT (M. Newville et al. 2014) msafit (A. de Graaff et al. 2024). - Text extracted from Acknowledgements, no separate DAS","OA_type":"gold","has_accepted_license":"1","_id":"21999","type":"journal_article","intvolume":"      1003","DOAJ_listed":"1","scopus_import":"1","publication_status":"published","file":[{"file_name":"2026_AstrophysicalJour_Fei.pdf","file_size":19681834,"relation":"main_file","access_level":"open_access","content_type":"application/pdf","file_id":"22112","date_updated":"2026-06-22T08:03:55Z","date_created":"2026-06-22T08:03:55Z","creator":"dernst","checksum":"b04247996b8dcd0eb5387581706d1106","success":1}],"citation":{"ieee":"Q. Fei <i>et al.</i>, “A GLIMPSE of intermediate mass Black Holes in the epoch of reionization: Witnessing the descendants of direct collapse?,” <i>The Astrophysical Journal</i>, vol. 1003, no. 2. IOP Publishing, 2026.","ista":"Fei Q, Fujimoto S, Naidu RP, Chisholm J, Atek H, Brammer G, Asada Y, Berg DA, Bromm V, Furtak LJ, Greene JE, Hsiao TYY, Jeon J, Kokorev V, Matthee JJ, Natarajan P, Pan R, Richard J, Saldana-Lopez A, Schaerer D, Volonteri M, Zitrin A. 2026. A GLIMPSE of intermediate mass Black Holes in the epoch of reionization: Witnessing the descendants of direct collapse? The Astrophysical Journal. 1003(2), 244.","chicago":"Fei, Qinyue, Seiji Fujimoto, Rohan P. Naidu, John Chisholm, Hakim Atek, Gabriel Brammer, Yoshihisa Asada, et al. “A GLIMPSE of Intermediate Mass Black Holes in the Epoch of Reionization: Witnessing the Descendants of Direct Collapse?” <i>The Astrophysical Journal</i>. IOP Publishing, 2026. <a href=\"https://doi.org/10.3847/1538-4357/ae6248\">https://doi.org/10.3847/1538-4357/ae6248</a>.","mla":"Fei, Qinyue, et al. “A GLIMPSE of Intermediate Mass Black Holes in the Epoch of Reionization: Witnessing the Descendants of Direct Collapse?” <i>The Astrophysical Journal</i>, vol. 1003, no. 2, 244, IOP Publishing, 2026, doi:<a href=\"https://doi.org/10.3847/1538-4357/ae6248\">10.3847/1538-4357/ae6248</a>.","ama":"Fei Q, Fujimoto S, Naidu RP, et al. A GLIMPSE of intermediate mass Black Holes in the epoch of reionization: Witnessing the descendants of direct collapse? <i>The Astrophysical Journal</i>. 2026;1003(2). doi:<a href=\"https://doi.org/10.3847/1538-4357/ae6248\">10.3847/1538-4357/ae6248</a>","apa":"Fei, Q., Fujimoto, S., Naidu, R. P., Chisholm, J., Atek, H., Brammer, G., … Zitrin, A. (2026). A GLIMPSE of intermediate mass Black Holes in the epoch of reionization: Witnessing the descendants of direct collapse? <i>The Astrophysical Journal</i>. IOP Publishing. <a href=\"https://doi.org/10.3847/1538-4357/ae6248\">https://doi.org/10.3847/1538-4357/ae6248</a>","short":"Q. Fei, S. Fujimoto, R.P. Naidu, J. Chisholm, H. Atek, G. Brammer, Y. Asada, D.A. Berg, V. Bromm, L.J. Furtak, J.E. Greene, T.Y.Y. Hsiao, J. Jeon, V. Kokorev, J.J. Matthee, P. Natarajan, R. Pan, J. Richard, A. Saldana-Lopez, D. Schaerer, M. Volonteri, A. Zitrin, The Astrophysical Journal 1003 (2026)."},"volume":1003,"publisher":"IOP Publishing","day":"01","author":[{"first_name":"Qinyue","last_name":"Fei","full_name":"Fei, Qinyue"},{"first_name":"Seiji","last_name":"Fujimoto","full_name":"Fujimoto, Seiji"},{"first_name":"Rohan P.","last_name":"Naidu","full_name":"Naidu, Rohan P."},{"first_name":"John","last_name":"Chisholm","full_name":"Chisholm, John"},{"first_name":"Hakim","full_name":"Atek, Hakim","last_name":"Atek"},{"full_name":"Brammer, Gabriel","last_name":"Brammer","first_name":"Gabriel"},{"first_name":"Yoshihisa","last_name":"Asada","full_name":"Asada, Yoshihisa"},{"first_name":"Danielle A.","full_name":"Berg, Danielle A.","last_name":"Berg"},{"first_name":"Volker","last_name":"Bromm","full_name":"Bromm, Volker"},{"first_name":"Lukas J.","last_name":"Furtak","full_name":"Furtak, Lukas J."},{"first_name":"Jenny E.","full_name":"Greene, Jenny E.","last_name":"Greene"},{"last_name":"Hsiao","full_name":"Hsiao, Tiger Yu Yang","first_name":"Tiger Yu Yang"},{"first_name":"Junehyoung","last_name":"Jeon","full_name":"Jeon, Junehyoung"},{"first_name":"Vasily","last_name":"Kokorev","full_name":"Kokorev, Vasily"},{"last_name":"Matthee","full_name":"Matthee, Jorryt J","id":"7439a258-f3c0-11ec-9501-9df22fe06720","first_name":"Jorryt J","orcid":"0000-0003-2871-127X"},{"full_name":"Natarajan, Priyamvada","last_name":"Natarajan","first_name":"Priyamvada"},{"first_name":"Richard","last_name":"Pan","full_name":"Pan, Richard"},{"full_name":"Richard, Johan","last_name":"Richard","first_name":"Johan"},{"last_name":"Saldana-Lopez","full_name":"Saldana-Lopez, Alberto","first_name":"Alberto"},{"full_name":"Schaerer, Daniel","last_name":"Schaerer","first_name":"Daniel"},{"first_name":"Marta","last_name":"Volonteri","full_name":"Volonteri, Marta"},{"last_name":"Zitrin","full_name":"Zitrin, Adi","first_name":"Adi"}],"doi":"10.3847/1538-4357/ae6248","quality_controlled":"1","OA_place":"publisher","ddc":["520"],"issue":"2","article_number":"244","researchdata_availability":"yes","status":"public","oa_version":"Published Version","month":"06","article_type":"original"},{"OA_place":"publisher","doi":"10.4230/LIPIcs.SoCG.2026.93","quality_controlled":"1","conference":{"location":"New Brunswick, NJ, United States","name":"SoCG: Symposium on Computational Geometry","start_date":"2026-06-02","end_date":"2026-06-05"},"oa_version":"Published Version","month":"05","researchdata_availability":"no","keyword":["Triangulation of manifolds","Simplicial approximation","CW complexes","Delaunay complexes","List homomorphism problem","Topological Data Analysis"],"article_number":"93:1-93:22","ddc":["500"],"status":"public","publication_status":"published","citation":{"ieee":"R. Tinarrage, “Simplicial approximation to CW complexes with spherical Delaunay triangulations,” in <i>42nd International Symposium on Computational Geometry</i>, New Brunswick, NJ, United States, 2026, vol. 367.","apa":"Tinarrage, R. (2026). Simplicial approximation to CW complexes with spherical Delaunay triangulations. In <i>42nd International Symposium on Computational Geometry</i> (Vol. 367). New Brunswick, NJ, United States: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. <a href=\"https://doi.org/10.4230/LIPIcs.SoCG.2026.93\">https://doi.org/10.4230/LIPIcs.SoCG.2026.93</a>","short":"R. Tinarrage, in:, 42nd International Symposium on Computational Geometry, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2026.","chicago":"Tinarrage, Raphaël. “Simplicial Approximation to CW Complexes with Spherical Delaunay Triangulations.” In <i>42nd International Symposium on Computational Geometry</i>, Vol. 367. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2026. <a href=\"https://doi.org/10.4230/LIPIcs.SoCG.2026.93\">https://doi.org/10.4230/LIPIcs.SoCG.2026.93</a>.","mla":"Tinarrage, Raphaël. “Simplicial Approximation to CW Complexes with Spherical Delaunay Triangulations.” <i>42nd International Symposium on Computational Geometry</i>, vol. 367, 93:1-93:22, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2026, doi:<a href=\"https://doi.org/10.4230/LIPIcs.SoCG.2026.93\">10.4230/LIPIcs.SoCG.2026.93</a>.","ama":"Tinarrage R. Simplicial approximation to CW complexes with spherical Delaunay triangulations. In: <i>42nd International Symposium on Computational Geometry</i>. Vol 367. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2026. doi:<a href=\"https://doi.org/10.4230/LIPIcs.SoCG.2026.93\">10.4230/LIPIcs.SoCG.2026.93</a>","ista":"Tinarrage R. 2026. Simplicial approximation to CW complexes with spherical Delaunay triangulations. 42nd International Symposium on Computational Geometry. SoCG: Symposium on Computational Geometry vol. 367, 93:1-93:22."},"file":[{"creator":"dernst","success":1,"checksum":"a468edad327962309688aa78678138da","access_level":"open_access","relation":"main_file","file_size":1436035,"file_name":"2026_LIPIcSSoCG_Tinarrage.pdf","date_updated":"2026-06-22T07:53:13Z","file_id":"22111","date_created":"2026-06-22T07:53:13Z","content_type":"application/pdf"}],"scopus_import":"1","related_material":{"link":[{"url":"https://doi.org/10.5281/zenodo.19251455","relation":"software"}]},"day":"27","author":[{"full_name":"Tinarrage, Raphaël","last_name":"Tinarrage","first_name":"Raphaël","id":"40ebcc9d-905f-11ef-bf0a-dc475da8a04e","orcid":"0000-0002-1404-1095"}],"volume":367,"publisher":"Schloss Dagstuhl - Leibniz-Zentrum für Informatik","language":[{"iso":"eng"}],"file_date_updated":"2026-06-22T07:53:13Z","OA_type":"gold","date_published":"2026-05-27T00:00:00Z","das_tickbox":"0","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"title":"Simplicial approximation to CW complexes with spherical Delaunay triangulations","article_processing_charge":"Yes","intvolume":"       367","has_accepted_license":"1","_id":"22000","type":"conference","year":"2026","date_updated":"2026-06-22T11:28:26Z","publication":"42nd International Symposium on Computational Geometry","date_created":"2026-06-14T22:01:43Z","arxiv":1,"publication_identifier":{"eissn":["1868-8969"],"isbn":["9783959774185"]},"external_id":{"arxiv":["2112.07573"]},"abstract":[{"lang":"eng","text":"Simplicial approximation provides a framework for constructing simplicial complexes that are homotopy equivalent to a given manifold, provided a CW structure is explicitly known. However, its conventional implementation quickly becomes intractable on a computer: barycentric subdivision produces poorly shaped simplices, and the star condition introduces many vertices. To address these limitations, this article develops a subdivision scheme based on spherical Delaunay triangulations, which attains better refinement properties than barycentric subdivisions. Moreover, the star condition is reframed as two independent problems, one geometric and the other combinatorial, respectively tackled in the language of locally equiconnected spaces and the list homomorphism problem, allowing an exponential reduction in the number of vertices. Via a prototype implementation, we obtain simplicial complexes homotopy equivalent to Grassmannians and Stiefel manifolds up to dimension 5."}],"department":[{"_id":"UlWa"}],"supplementarymaterial":"yes","oa":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","corr_author":"1"},{"alternative_title":["LIPIcs"],"publication_status":"published","file":[{"file_name":"2026_LIPIcSSoCG_Leskiewicz.pdf","access_level":"open_access","relation":"main_file","file_size":2052749,"content_type":"application/pdf","date_updated":"2026-06-22T07:39:21Z","file_id":"22110","date_created":"2026-06-22T07:39:21Z","creator":"dernst","checksum":"3be91c06fdf716c8735b6af64a09a921","success":1}],"citation":{"short":"J. Leśkiewicz, B. Furmanek, M. Lipiński, D. Morozov, in:, 42nd International Symposium on Computational Geometry, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2026.","apa":"Leśkiewicz, J., Furmanek, B., Lipiński, M., &#38; Morozov, D. (2026). Topological simplification guided by forbidden regions. In <i>42nd International Symposium on Computational Geometry</i> (Vol. 367). New Brunswick, NJ, United States: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. <a href=\"https://doi.org/10.4230/LIPIcs.SoCG.2026.72\">https://doi.org/10.4230/LIPIcs.SoCG.2026.72</a>","chicago":"Leśkiewicz, Jakub, Bartosz Furmanek, Michał Lipiński, and Dmitriy Morozov. “Topological Simplification Guided by Forbidden Regions.” In <i>42nd International Symposium on Computational Geometry</i>, Vol. 367. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2026. <a href=\"https://doi.org/10.4230/LIPIcs.SoCG.2026.72\">https://doi.org/10.4230/LIPIcs.SoCG.2026.72</a>.","ama":"Leśkiewicz J, Furmanek B, Lipiński M, Morozov D. Topological simplification guided by forbidden regions. In: <i>42nd International Symposium on Computational Geometry</i>. Vol 367. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2026. doi:<a href=\"https://doi.org/10.4230/LIPIcs.SoCG.2026.72\">10.4230/LIPIcs.SoCG.2026.72</a>","mla":"Leśkiewicz, Jakub, et al. “Topological Simplification Guided by Forbidden Regions.” <i>42nd International Symposium on Computational Geometry</i>, vol. 367, 72:1-72:17, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2026, doi:<a href=\"https://doi.org/10.4230/LIPIcs.SoCG.2026.72\">10.4230/LIPIcs.SoCG.2026.72</a>.","ista":"Leśkiewicz J, Furmanek B, Lipiński M, Morozov D. 2026. Topological simplification guided by forbidden regions. 42nd International Symposium on Computational Geometry. SoCG: Symposium on Computational Geometry, LIPIcs, vol. 367, 72:1-72:17.","ieee":"J. Leśkiewicz, B. Furmanek, M. Lipiński, and D. Morozov, “Topological simplification guided by forbidden regions,” in <i>42nd International Symposium on Computational Geometry</i>, New Brunswick, NJ, United States, 2026, vol. 367."},"scopus_import":"1","ec_funded":1,"day":"27","author":[{"full_name":"Leśkiewicz, Jakub","last_name":"Leśkiewicz","first_name":"Jakub"},{"last_name":"Furmanek","full_name":"Furmanek, Bartosz","first_name":"Bartosz"},{"orcid":"0000-0001-9789-9750","first_name":"Michał","id":"dfffb474-4317-11ee-8f5c-fe3fc95a425e","last_name":"Lipiński","full_name":"Lipiński, Michał"},{"first_name":"Dmitriy","last_name":"Morozov","full_name":"Morozov, Dmitriy"}],"volume":367,"project":[{"name":"IST-BRIDGE: International postdoctoral program","call_identifier":"H2020","grant_number":"101034413","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c"}],"publisher":"Schloss Dagstuhl - Leibniz-Zentrum für Informatik","OA_place":"publisher","doi":"10.4230/LIPIcs.SoCG.2026.72","quality_controlled":"1","conference":{"end_date":"2026-06-05","name":"SoCG: Symposium on Computational Geometry","start_date":"2026-06-02","location":"New Brunswick, NJ, United States"},"oa_version":"Published Version","month":"05","article_number":"72:1-72:17","keyword":["persistent homology","topological simplification","depth posets"],"ddc":["500"],"status":"public","year":"2026","date_updated":"2026-06-22T07:45:36Z","publication":"42nd International Symposium on Computational Geometry","date_created":"2026-06-14T22:01:43Z","acknowledgement":"Jakub Leśkiewicz wants to thank his supervisor, Prof. Marian Mrozek, forscientific guidance, patience, and opportunity to delay the rest of his duties while writing this work.\r\nThe author also extends thanks to his entire family, to Zuzanna Świątek, and to Mikołaj Kardyś,\r\nBEng, MSc, for providing meals during the most intensive periods of work. Jakub Leśkiewicz: The research was partially funded by the Polish National Science Center under Opus Grant No. 2019/35/B/ST1/00874 and Opus Grant 2025/57/B/ST1/00550. Bartosz Furmanek: The research was partially funded by the Polish National Science Center under Opus Grant No. 2019/35/B/ST1/00874 and Opus Grant 2025/57/B/ST1/00550. Michał Lipiński: This project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 101034413. \r\nDmitriy Morozov: This work was supported in part by the U.S. Department of Energy, Office\r\nof Science, Office of Advanced Scientific Computing Research, under Contract No. DE-AC02-\r\n05CH11231.","publication_identifier":{"eissn":["1868-8969"],"isbn":["9783959774185"]},"arxiv":1,"external_id":{"arxiv":["2603.16416"]},"abstract":[{"text":"Topological simplification is the process of reducing complexity of a function while maintaining its essential features. Its goal is to find a new filter function, which reorders cells of the input complex in a way which eliminates some persistent homological features, without affecting the rest. We present a new approach to simplification based on the concept of forbidden regions and combinatorial dynamics. It allows us to reorder and cancel critical values, whose cancellation is not possible using existing methods because they are not consecutive in the total order. Each such cancellation takes O(c⋅n) time in the worst case, where c is the number of birth-death pairs and n is the size of the input complex.","lang":"eng"}],"department":[{"_id":"HeEd"}],"oa":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","corr_author":"1","language":[{"iso":"eng"}],"file_date_updated":"2026-06-22T07:39:21Z","OA_type":"gold","date_published":"2026-05-27T00:00:00Z","das_tickbox":"0","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"article_processing_charge":"No","title":"Topological simplification guided by forbidden regions","intvolume":"       367","has_accepted_license":"1","_id":"22002","type":"conference"},{"keyword":["Gromov–Hausdorff distance","distortion","connectedness","Borsuk–Ulam theorem"],"article_number":"3:1-3:16","ddc":["500"],"status":"public","conference":{"location":"New Brunswick, NJ, United States","name":"SoCG: Symposium on Computational Geometry","start_date":"2026-06-02","end_date":"2026-06-05"},"oa_version":"Published Version","month":"05","doi":"10.4230/LIPIcs.SoCG.2026.3","quality_controlled":"1","OA_place":"publisher","volume":367,"project":[{"name":"Algebraic Footprints of Geometric Features in Homology","call_identifier":"FWF","grant_number":"I04245","_id":"26AD5D90-B435-11E9-9278-68D0E5697425"}],"publisher":"Schloss Dagstuhl - Leibniz-Zentrum für Informatik","day":"27","author":[{"full_name":"Adams, Henry","last_name":"Adams","first_name":"Henry"},{"last_name":"Majhi","full_name":"Majhi, Sushovan","first_name":"Sushovan"},{"first_name":"Fedor","full_name":"Manin, Fedor","last_name":"Manin"},{"id":"2E36B656-F248-11E8-B48F-1D18A9856A87","first_name":"Ziga","last_name":"Virk","full_name":"Virk, Ziga"},{"orcid":"0000-0001-8686-1888","first_name":"Nicolò","id":"c8b3499c-7a77-11eb-b046-aa368cbbf2ad","full_name":"Zava, Nicolò","last_name":"Zava"}],"scopus_import":"1","publication_status":"published","alternative_title":["LIPIcs"],"file":[{"creator":"dernst","success":1,"checksum":"25d27c016409563196b8aecfe5bfdf41","access_level":"open_access","file_size":1091310,"relation":"main_file","file_name":"2026_LIPIcSSoCG_Adams.pdf","date_updated":"2026-06-22T08:43:47Z","file_id":"22115","date_created":"2026-06-22T08:43:47Z","content_type":"application/pdf"}],"citation":{"ista":"Adams H, Majhi S, Manin F, Virk Z, Zava N. 2026. Lower bounding the Gromov–Hausdorff distance in metric graphs. 42nd International Symposium on Computational Geometry. SoCG: Symposium on Computational Geometry, LIPIcs, vol. 367, 3:1-3:16.","chicago":"Adams, Henry, Sushovan Majhi, Fedor Manin, Ziga Virk, and Nicolò Zava. “Lower Bounding the Gromov–Hausdorff Distance in Metric Graphs.” In <i>42nd International Symposium on Computational Geometry</i>, Vol. 367. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2026. <a href=\"https://doi.org/10.4230/LIPIcs.SoCG.2026.3\">https://doi.org/10.4230/LIPIcs.SoCG.2026.3</a>.","mla":"Adams, Henry, et al. “Lower Bounding the Gromov–Hausdorff Distance in Metric Graphs.” <i>42nd International Symposium on Computational Geometry</i>, vol. 367, 3:1-3:16, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2026, doi:<a href=\"https://doi.org/10.4230/LIPIcs.SoCG.2026.3\">10.4230/LIPIcs.SoCG.2026.3</a>.","ama":"Adams H, Majhi S, Manin F, Virk Z, Zava N. Lower bounding the Gromov–Hausdorff distance in metric graphs. In: <i>42nd International Symposium on Computational Geometry</i>. Vol 367. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2026. doi:<a href=\"https://doi.org/10.4230/LIPIcs.SoCG.2026.3\">10.4230/LIPIcs.SoCG.2026.3</a>","short":"H. Adams, S. Majhi, F. Manin, Z. Virk, N. Zava, in:, 42nd International Symposium on Computational Geometry, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2026.","apa":"Adams, H., Majhi, S., Manin, F., Virk, Z., &#38; Zava, N. (2026). Lower bounding the Gromov–Hausdorff distance in metric graphs. In <i>42nd International Symposium on Computational Geometry</i> (Vol. 367). New Brunswick, NJ, United States: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. <a href=\"https://doi.org/10.4230/LIPIcs.SoCG.2026.3\">https://doi.org/10.4230/LIPIcs.SoCG.2026.3</a>","ieee":"H. Adams, S. Majhi, F. Manin, Z. Virk, and N. Zava, “Lower bounding the Gromov–Hausdorff distance in metric graphs,” in <i>42nd International Symposium on Computational Geometry</i>, New Brunswick, NJ, United States, 2026, vol. 367."},"has_accepted_license":"1","type":"conference","_id":"22003","intvolume":"       367","date_published":"2026-05-27T00:00:00Z","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"das_tickbox":"0","article_processing_charge":"Yes","title":"Lower bounding the Gromov–Hausdorff distance in metric graphs","file_date_updated":"2026-06-22T08:43:47Z","language":[{"iso":"eng"}],"OA_type":"gold","oa":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","corr_author":"1","department":[{"_id":"HeEd"}],"external_id":{"arxiv":["2411.09182"]},"abstract":[{"lang":"eng","text":"Let G be a finite, connected metric graph and let X be a subset of G. If X is sufficiently dense in G, we show that the Gromov-Hausdorff distance matches the Hausdorff distance, namely d_GH(G,X) = d_H(G,X). When the metric graph is the circle G = S¹ with circumference 2π, a recent study established the equality d_GH(S¹,X) = d_H(S¹,X) whenever d_GH(S¹,X) < π/6. Our results relax this hypothesis to d_GH(S¹,X) < π/3, and furthermore, we show that the constant π/3 is the best possible. We lower bound the Gromov-Hausdorff distance d_GH(G,X) by the Hausdorff distance d_H(G,X) via a simple topological obstruction: the existence of a possibly discontinuous function f: G → X with too small distortion contradicts the connectedness of G."}],"year":"2026","date_updated":"2026-06-22T08:49:17Z","date_created":"2026-06-14T22:01:44Z","publication":"42nd International Symposium on Computational Geometry","acknowledgement":"Funding Henry Adams: Simons Foundation Travel Support for Mathematicians.\r\nŽiga Virk: Slovene research agency grant P1-0292.\r\nNicolò Zava: FWF Grant, Project number I4245-N35.\r\n","arxiv":1,"publication_identifier":{"eissn":["1868-8969"],"isbn":["9783959774185"]}},{"department":[{"_id":"MoHe"}],"oa":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","corr_author":"1","date_updated":"2026-06-22T08:37:44Z","year":"2026","publication":"42nd International Symposium on Computational Geometry","date_created":"2026-06-14T22:01:44Z","acknowledgement":"Timothy M. Chan: Supported by NSF grant CCF-2224271.\r\nHsien-Chih Chang: Supported by NSF CAREER award CCF-2443017.\r\nJie Gao: Supported by NSF DMS-2220271, DMS-2311064, IIS-2229876, CCF-2118953, CNS-2515159.\r\nSándor Kisfaludi-Bak: Supported by the Research Council of Finland, Grant 363444.\r\nHung Le: Supported by an NSF grant CCF-2517033 and an NSF CAREER Award CCF-2237288. Da Wei Zheng: This project has received funding from the Austrian Science Fund (FWF) grant\r\nDOI 10.55776/I5982. For open access purposes, the author has applied a CC BY public copyright license to any author-accepted manuscript version arising from this submission.","publication_identifier":{"isbn":["9783959774185"],"eissn":["1868-8969"]},"arxiv":1,"external_id":{"arxiv":["2603.21790"]},"abstract":[{"text":"Recent research on computing the diameter of geometric intersection graphs has made significant strides, primarily focusing on the 2D case [Duraj et al., 2024; Hsien-Chih Chang et al., 2024; Chan et al., 2025] where truly subquadratic-time algorithms were given for simple objects such as unit-disks and (axis-aligned) squares. However, in three or higher dimensions, there is no known truly subquadratic-time algorithm for any intersection graph of non-trivial objects, even basic ones such as unit balls or (axis-aligned) unit cubes. This was partially explained by the pioneering work of Bringmann et al. [Karl Bringmann et al., 2022] which gave several truly subquadratic lower bounds, notably for unit balls or unit cubes in 3D when the graph diameter Δ is at least Ω(log n), hinting at a pessimistic outlook for the complexity of the diameter problem in higher dimensions. In this paper, we substantially extend the landscape of diameter computation for objects in three and higher dimensions, giving a few positive results. Our highlighted findings include:  \r\n1) A truly subquadratic-time algorithm for deciding if the diameter of unit cubes in 3D is at most 3 (Diameter-3 hereafter), the first algorithm of its kind for objects in 3D or higher dimensions. Our algorithm is based on a novel connection to pseudolines, which is of independent interest. \r\n2) A truly subquadratic time lower bound for Diameter-3 of unit balls in 3D under the Orthogonal Vector (OV) hypothesis, giving the first separation between unit balls and unit cubes in the small diameter regime. Previously, computing the diameter for both objects was known to be quadratic hard when the diameter is Ω(log n) [Karl Bringmann et al., 2022]. \r\n3) A near-linear-time algorithm for Diameter-2 of unit cubes in 3D, generalizing the previous result for unit squares in 2D [Karl Bringmann et al., 2022]. \r\n4) A truly subquadratic-time algorithm and lower bound for Diameter-2 and Diameter-3 of rectangular boxes (of arbitrary dimension and sizes), respectively.","lang":"eng"}],"intvolume":"       367","has_accepted_license":"1","_id":"22004","type":"conference","file_date_updated":"2026-06-22T08:34:11Z","language":[{"iso":"eng"}],"OA_type":"gold","date_published":"2026-05-27T00:00:00Z","das_tickbox":"0","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"article_processing_charge":"Yes","title":"Charting the diameter computation landscape of intersection graphs in 3D and above","day":"27","author":[{"first_name":"Timothy M.","last_name":"Chan","full_name":"Chan, Timothy M."},{"full_name":"Chang, Hsien Chih","last_name":"Chang","first_name":"Hsien Chih"},{"first_name":"Jie","last_name":"Gao","full_name":"Gao, Jie"},{"last_name":"Kisfaludi-Bak","full_name":"Kisfaludi-Bak, Sándor","first_name":"Sándor"},{"last_name":"Le","full_name":"Le, Hung","first_name":"Hung"},{"full_name":"Zheng, Da Wei","last_name":"Zheng","id":"af77956b-e859-11ef-8dc9-d301b898e32f","first_name":"Da Wei"}],"volume":367,"project":[{"name":"Static and Dynamic Hierarchical Graph Decompositions","grant_number":"I05982","_id":"bda196b2-d553-11ed-ba76-8e8ee6c21103"}],"publisher":"Schloss Dagstuhl - Leibniz-Zentrum für Informatik","publication_status":"published","alternative_title":["LIPIcs"],"citation":{"apa":"Chan, T. M., Chang, H. C., Gao, J., Kisfaludi-Bak, S., Le, H., &#38; Zheng, D. W. (2026). Charting the diameter computation landscape of intersection graphs in 3D and above. In <i>42nd International Symposium on Computational Geometry</i> (Vol. 367). New Brunswick, NJ, United States: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. <a href=\"https://doi.org/10.4230/LIPIcs.SoCG.2026.29\">https://doi.org/10.4230/LIPIcs.SoCG.2026.29</a>","short":"T.M. Chan, H.C. Chang, J. Gao, S. Kisfaludi-Bak, H. Le, D.W. Zheng, in:, 42nd International Symposium on Computational Geometry, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2026.","chicago":"Chan, Timothy M., Hsien Chih Chang, Jie Gao, Sándor Kisfaludi-Bak, Hung Le, and Da Wei Zheng. “Charting the Diameter Computation Landscape of Intersection Graphs in 3D and Above.” In <i>42nd International Symposium on Computational Geometry</i>, Vol. 367. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2026. <a href=\"https://doi.org/10.4230/LIPIcs.SoCG.2026.29\">https://doi.org/10.4230/LIPIcs.SoCG.2026.29</a>.","ista":"Chan TM, Chang HC, Gao J, Kisfaludi-Bak S, Le H, Zheng DW. 2026. Charting the diameter computation landscape of intersection graphs in 3D and above. 42nd International Symposium on Computational Geometry. SoCG: Symposium on Computational Geometry, LIPIcs, vol. 367, 29:1-29:15.","mla":"Chan, Timothy M., et al. “Charting the Diameter Computation Landscape of Intersection Graphs in 3D and Above.” <i>42nd International Symposium on Computational Geometry</i>, vol. 367, 29:1-29:15, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2026, doi:<a href=\"https://doi.org/10.4230/LIPIcs.SoCG.2026.29\">10.4230/LIPIcs.SoCG.2026.29</a>.","ama":"Chan TM, Chang HC, Gao J, Kisfaludi-Bak S, Le H, Zheng DW. Charting the diameter computation landscape of intersection graphs in 3D and above. In: <i>42nd International Symposium on Computational Geometry</i>. Vol 367. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2026. doi:<a href=\"https://doi.org/10.4230/LIPIcs.SoCG.2026.29\">10.4230/LIPIcs.SoCG.2026.29</a>","ieee":"T. M. Chan, H. C. Chang, J. Gao, S. Kisfaludi-Bak, H. Le, and D. W. Zheng, “Charting the diameter computation landscape of intersection graphs in 3D and above,” in <i>42nd International Symposium on Computational Geometry</i>, New Brunswick, NJ, United States, 2026, vol. 367."},"file":[{"creator":"dernst","success":1,"checksum":"ffff03934cc182757d6db82d88f896e6","relation":"main_file","file_size":918197,"access_level":"open_access","file_name":"2026_LIPIcSSoCG_Chan.pdf","date_created":"2026-06-22T08:34:11Z","file_id":"22114","date_updated":"2026-06-22T08:34:11Z","content_type":"application/pdf"}],"scopus_import":"1","conference":{"location":"New Brunswick, NJ, United States","start_date":"2026-06-02","name":"SoCG: Symposium on Computational Geometry","end_date":"2026-06-05"},"oa_version":"Published Version","month":"05","article_number":"29:1-29:15","keyword":["Graph Diameter","Geometric Intersection Graphs","Unit Ball Graphs"],"ddc":["000"],"status":"public","OA_place":"publisher","quality_controlled":"1","doi":"10.4230/LIPIcs.SoCG.2026.29"},{"day":"18","author":[{"last_name":"Chalupa","full_name":"Chalupa, Marek","first_name":"Marek","id":"87e34708-d6c6-11ec-9f5b-9391e7be2463"},{"last_name":"Henzinger","full_name":"Henzinger, Thomas A","orcid":"0000-0002-2985-7724","first_name":"Thomas A","id":"40876CD8-F248-11E8-B48F-1D18A9856A87"},{"id":"8C6B42F8-C8E6-11E9-A03A-F2DCE5697425","first_name":"Naci E","last_name":"Sarac","full_name":"Sarac, Naci E"},{"last_name":"Yu","full_name":"Yu, Zhengqi","orcid":"0000-0002-4993-773X","first_name":"Zhengqi","id":"20aa2ae8-f2f1-11ed-bbfa-8205053f1342"}],"volume":16557,"project":[{"_id":"62781420-2b32-11ec-9570-8d9b63373d4d","grant_number":"101020093","call_identifier":"H2020","name":"Vigilant Algorithmic Monitoring of Software"}],"publisher":"Springer Nature","alternative_title":["LNCS"],"publication_status":"published","page":"214-233","file":[{"creator":"dernst","checksum":"7055199ecb985e9e2e272f4988827067","success":1,"file_name":"2026_LNCS_Chalupa.pdf","file_size":849237,"access_level":"open_access","relation":"main_file","content_type":"application/pdf","date_updated":"2026-06-22T08:18:41Z","file_id":"22113","date_created":"2026-06-22T08:18:41Z"}],"citation":{"apa":"Chalupa, M., Henzinger, T. A., Sarac, N. E., &#38; Yu, E. (2026). Quantitative monitoring of Signal First-Order logic. In <i>27th International Symposium on Formal Methods</i> (Vol. 16557, pp. 214–233). Tokyo, Japan: Springer Nature. <a href=\"https://doi.org/10.1007/978-3-032-26220-2_11\">https://doi.org/10.1007/978-3-032-26220-2_11</a>","short":"M. Chalupa, T.A. Henzinger, N.E. Sarac, E. Yu, in:, 27th International Symposium on Formal Methods, Springer Nature, 2026, pp. 214–233.","chicago":"Chalupa, Marek, Thomas A Henzinger, Naci E Sarac, and Emily Yu. “Quantitative Monitoring of Signal First-Order Logic.” In <i>27th International Symposium on Formal Methods</i>, 16557:214–33. Springer Nature, 2026. <a href=\"https://doi.org/10.1007/978-3-032-26220-2_11\">https://doi.org/10.1007/978-3-032-26220-2_11</a>.","ista":"Chalupa M, Henzinger TA, Sarac NE, Yu E. 2026. Quantitative monitoring of Signal First-Order logic. 27th International Symposium on Formal Methods. FM: Formal Methods, LNCS, vol. 16557, 214–233.","mla":"Chalupa, Marek, et al. “Quantitative Monitoring of Signal First-Order Logic.” <i>27th International Symposium on Formal Methods</i>, vol. 16557, Springer Nature, 2026, pp. 214–33, doi:<a href=\"https://doi.org/10.1007/978-3-032-26220-2_11\">10.1007/978-3-032-26220-2_11</a>.","ama":"Chalupa M, Henzinger TA, Sarac NE, Yu E. Quantitative monitoring of Signal First-Order logic. In: <i>27th International Symposium on Formal Methods</i>. Vol 16557. Springer Nature; 2026:214-233. doi:<a href=\"https://doi.org/10.1007/978-3-032-26220-2_11\">10.1007/978-3-032-26220-2_11</a>","ieee":"M. Chalupa, T. A. Henzinger, N. E. Sarac, and E. Yu, “Quantitative monitoring of Signal First-Order logic,” in <i>27th International Symposium on Formal Methods</i>, Tokyo, Japan, 2026, vol. 16557, pp. 214–233."},"scopus_import":"1","ec_funded":1,"oa_version":"Published Version","conference":{"end_date":"2026-05-22","name":"FM: Formal Methods","start_date":"2026-05-18","location":"Tokyo, Japan"},"month":"05","keyword":["Signal first-order logic","Robustness-based quantitative semantics","Online runtime monitoring"],"ddc":["000"],"status":"public","OA_place":"publisher","doi":"10.1007/978-3-032-26220-2_11","quality_controlled":"1","department":[{"_id":"ToHe"}],"oa":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2026-06-22T08:21:09Z","year":"2026","date_created":"2026-06-14T22:01:44Z","publication":"27th International Symposium on Formal Methods","acknowledgement":"We thank the anonymous reviewers for their helpful comments. This work was supported by the European Research Council (ERC) Grants VAMOS (No. 101020093) and HYPER (No. 101055412), and by the Advanced Research and Invention Agency under the Safeguarded AI programme (MSAI-PR01-P047).","publication_identifier":{"issn":["0302-9743"],"eissn":["1611-3349"],"isbn":["9783032262196"]},"arxiv":1,"external_id":{"arxiv":["2603.00728"]},"abstract":[{"text":"Runtime monitoring checks, during execution, whether a partial signal produced by a hybrid system satisfies its specification. Signal First-Order Logic (SFO) offers expressive real-time specifications over such signals, but currently comes only with Boolean semantics and has no tool support. We provide the first robustness-based quantitative semantics for SFO, enabling the expression and evaluation of rich real-time properties beyond the scope of existing formalisms such as Signal Temporal Logic. To enable online monitoring, we identify a past-time fragment of SFO and give a pastification procedure that transforms bounded-response SFO formulas into equisatisfiable formulas in this fragment. We then develop an efficient runtime monitoring algorithm for this past-time fragment and evaluate its performance on a set of benchmarks, demonstrating the practicality and effectiveness of our approach. To the best of our knowledge, this is the first publicly available prototype for online quantitative monitoring of full SFO.","lang":"eng"}],"intvolume":"     16557","has_accepted_license":"1","type":"conference","_id":"22006","file_date_updated":"2026-06-22T08:18:41Z","language":[{"iso":"eng"}],"OA_type":"hybrid","date_published":"2026-05-18T00:00:00Z","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"das_tickbox":"0","title":"Quantitative monitoring of Signal First-Order logic","article_processing_charge":"No"},{"DOAJ_listed":"1","scopus_import":"1","publication_status":"published","file":[{"access_level":"open_access","relation":"main_file","file_size":1161879,"file_name":"2026_CommunicationsPhysics_Li.pdf","date_created":"2026-06-24T06:09:35Z","file_id":"22133","date_updated":"2026-06-24T06:09:35Z","content_type":"application/pdf","creator":"dernst","success":1,"checksum":"3bf5852b54b9f13ec1679056a5f58c3a"}],"citation":{"ieee":"J. Li, G. Koutentakis, M. Hrast, M. Lemeshko, A. Schindewolf, and R. Al Hyder, “Tunable field-linked s-wave interactions in dipolar fermi mixtures,” <i>Communications Physics</i>, vol. 9. Springer Nature, 2026.","apa":"Li, J., Koutentakis, G., Hrast, M., Lemeshko, M., Schindewolf, A., &#38; Al Hyder, R. (2026). Tunable field-linked s-wave interactions in dipolar fermi mixtures. <i>Communications Physics</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s42005-026-02578-8\">https://doi.org/10.1038/s42005-026-02578-8</a>","short":"J. Li, G. Koutentakis, M. Hrast, M. Lemeshko, A. Schindewolf, R. Al Hyder, Communications Physics 9 (2026).","chicago":"Li, Jinglun, Georgios Koutentakis, Mateja Hrast, Mikhail Lemeshko, Andreas Schindewolf, and Ragheed Al Hyder. “Tunable Field-Linked s-Wave Interactions in Dipolar Fermi Mixtures.” <i>Communications Physics</i>. Springer Nature, 2026. <a href=\"https://doi.org/10.1038/s42005-026-02578-8\">https://doi.org/10.1038/s42005-026-02578-8</a>.","mla":"Li, Jinglun, et al. “Tunable Field-Linked s-Wave Interactions in Dipolar Fermi Mixtures.” <i>Communications Physics</i>, vol. 9, 201, Springer Nature, 2026, doi:<a href=\"https://doi.org/10.1038/s42005-026-02578-8\">10.1038/s42005-026-02578-8</a>.","ama":"Li J, Koutentakis G, Hrast M, Lemeshko M, Schindewolf A, Al Hyder R. Tunable field-linked s-wave interactions in dipolar fermi mixtures. <i>Communications Physics</i>. 2026;9. doi:<a href=\"https://doi.org/10.1038/s42005-026-02578-8\">10.1038/s42005-026-02578-8</a>","ista":"Li J, Koutentakis G, Hrast M, Lemeshko M, Schindewolf A, Al Hyder R. 2026. Tunable field-linked s-wave interactions in dipolar fermi mixtures. Communications Physics. 9, 201."},"volume":9,"publisher":"Springer Nature","project":[{"_id":"7c040762-9f16-11ee-852c-dd79eeee4ab3","grant_number":"F100403","name":"Coherent Optical Metrology Beyond Electric-Dipole-Allowed Transitions"},{"_id":"8fa7db46-16d5-11f0-9cad-917600954daf","grant_number":"12078","name":"Polarons in Lead Halide Perovskites"}],"day":"14","author":[{"first_name":"Jinglun","id":"ff19510a-0d2c-11ef-b018-c338ad2f4325","full_name":"Li, Jinglun","last_name":"Li"},{"full_name":"Koutentakis, Georgios","last_name":"Koutentakis","id":"d7b23d3a-9e21-11ec-b482-f76739596b95","first_name":"Georgios"},{"first_name":"Mateja","id":"48dbb294-2a9c-11ef-905d-f56be71f0e5d","full_name":"Hrast, Mateja","last_name":"Hrast"},{"first_name":"Mikhail","id":"37CB05FA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6990-7802","full_name":"Lemeshko, Mikhail","last_name":"Lemeshko"},{"first_name":"Andreas","full_name":"Schindewolf, Andreas","last_name":"Schindewolf"},{"last_name":"Al Hyder","full_name":"Al Hyder, Ragheed","first_name":"Ragheed","id":"d1c405be-ae15-11ed-8510-ccf53278162e"}],"quality_controlled":"1","doi":"10.1038/s42005-026-02578-8","OA_place":"publisher","ddc":["530"],"article_number":"201","researchdata_availability":"upon request","status":"public","oa_version":"Published Version","month":"04","article_type":"original","external_id":{"arxiv":["2506.23318"]},"PlanS_conform":"1","abstract":[{"lang":"eng","text":"Spin mixtures of degenerate fermions are a cornerstone of quantum many-body physics, enabling superfluidity, polarons, and rich spin dynamics through s-wave scattering resonances. Combining them with strong, long-range dipolar interactions provides highly flexible control schemes promising even more exotic quantum phases. Recently, microwave shielding gave access to spin-polarized degenerate samples of dipolar fermionic molecules, where tunable p-wave interactions were enabled by field-linked resonances available only by compromising the shielding (due to experimental limitations). Here, we study the scattering properties of a fermionic dipolar spin mixture and show that a universal s-wave resonance is readily accessible without compromising the shielding. We develop a universal description of the tunable s-wave interaction and weakly bound tetratomic states based on the microwave-field parameters. The s-wave resonance paves the way to stable, controllable and strongly-interacting dipolar spin mixtures of deeply degenerate fermions and supports favorable conditions to reach this regime via evaporative cooling."}],"publication":"Communications Physics","date_created":"2026-06-21T22:02:58Z","date_updated":"2026-06-24T06:10:44Z","year":"2026","arxiv":1,"publication_identifier":{"eissn":["2399-3650"]},"acknowledgement":"J.-L.Li thanks Gaoren Wang for valuable discussions on the absorbing boundary condition. G.M.K. thanks P. Giannakeas for fruitful discussions during the initial stages of this study. G.M.K. was funded by the Austrian Science Fund (FWF) [10.55776/F1004]. R.A. received funding from the Austrian Academy of Science ÖAW grant No. PR1029OEAW03. A.S. acknowledges funding from the European Union’s Horizon Europe research and innovation programme under grant agreement No. 101219560.","corr_author":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa":1,"supplementarymaterial":"yes","department":[{"_id":"MiLe"}],"date_published":"2026-04-14T00:00:00Z","article_processing_charge":"Yes","title":"Tunable field-linked s-wave interactions in dipolar fermi mixtures","das_tickbox":"1","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"language":[{"iso":"eng"}],"file_date_updated":"2026-06-24T06:09:35Z","dataavailabilitystatement":"The data that support the findings of this study are available from the corresponding authors upon request. The computational codes that were used to generate the figures presented in this study are available from the corresponding authors upon request.","OA_type":"gold","has_accepted_license":"1","_id":"22100","type":"journal_article","intvolume":"         9"},{"date_published":"2026-06-08T00:00:00Z","title":"SuperDP: Differential privacy refutation via supermartingales","article_processing_charge":"Yes","das_tickbox":"1","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"file_date_updated":"2026-06-24T06:19:56Z","language":[{"iso":"eng"}],"dataavailabilitystatement":"The artifact supporting the findings of this study, which includes the underlying datasets, software\r\ncode, and experiments, is publicly available in Zenodo https://zenodo.org/records/19399862.","OA_type":"gold","has_accepted_license":"1","_id":"22102","type":"journal_article","intvolume":"        10","external_id":{"arxiv":["2603.26215"]},"PlanS_conform":"1","abstract":[{"lang":"eng","text":"Differential privacy (DP) has established itself as one of the standards for ensuring privacy of individual data. However, reasoning about DP is a challenging and error-prone task, hence methods for formal verification and refutation of DP properties have received significant interest in recent years. In this work, we present a novel method for automated formal refutation of є-DP. Our method refutes є-DP by searching for a pair of inputs together with a non-negative function over outputs whose expected value on these two inputs differs by a significant amount. The two inputs and the non-negative function over outputs are computed simultaneously, by utilizing upper expectation supermartingales and lower expectation submartingales from probabilistic program analysis, which we leverage to introduce a sound and complete proof rule for є-DP refutation. To the best of our knowledge, our method is the first method for є-DP refutation to offer the following four desirable features: (1) it is fully automated, (2) it is applicable to stochastic mechanisms with sampling instructions from both discrete and continuous distributions, (3) it provides soundness guarantees, and (4) it provides semi-completeness guarantees. Our experiments show that our prototype tool SuperDP achieves superior performance compared to the state of the art and manages to refute є-DP for a number of challenging examples collected from the literature, including ones that were out of the reach of prior methods."}],"publication":"Proceedings of the ACM on Programming Languages","date_created":"2026-06-21T22:02:59Z","date_updated":"2026-06-24T06:39:37Z","year":"2026","publication_identifier":{"eissn":["2475-1421"]},"arxiv":1,"acknowledgement":"The authors would like to thank Petr Novotný for valuable discussions that helped shape this work.\r\nThis research was supported by the Singapore Ministry of Education (MOE) Academic Research\r\nFund (AcRF) Tier 1 grant (Proposal ID: 25-SIS-SMU-009), Vienna Science and Technology Fund\r\n(WWTF), State of Lower Austria [Grant ID 10.47379/ICT25017], ERC CoG 863818 (ForM-SMArt),\r\nand Austrian Science Fund (FWF) 10.55776/COE12.","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","corr_author":"1","oa":1,"supplementarymaterial":"no","department":[{"_id":"KrCh"}],"doi":"10.1145/3808296","quality_controlled":"1","OA_place":"publisher","issue":"PLDI","ddc":["000"],"article_number":"218","researchdata_availability":"yes","keyword":["Static Program Analysis","Differential Privacy","Probabilistic Programming","Martingales"],"status":"public","oa_version":"Published Version","month":"06","article_type":"original","scopus_import":"1","ec_funded":1,"publication_status":"published","citation":{"ieee":"K. Chatterjee, E. Goharshady, and D. Zikelic, “SuperDP: Differential privacy refutation via supermartingales,” <i>Proceedings of the ACM on Programming Languages</i>, vol. 10, no. PLDI. Association for Computing Machinery, 2026.","short":"K. Chatterjee, E. Goharshady, D. Zikelic, Proceedings of the ACM on Programming Languages 10 (2026).","apa":"Chatterjee, K., Goharshady, E., &#38; Zikelic, D. (2026). SuperDP: Differential privacy refutation via supermartingales. <i>Proceedings of the ACM on Programming Languages</i>. Association for Computing Machinery. <a href=\"https://doi.org/10.1145/3808296\">https://doi.org/10.1145/3808296</a>","chicago":"Chatterjee, Krishnendu, Ehsan Goharshady, and Dorde Zikelic. “SuperDP: Differential Privacy Refutation via Supermartingales.” <i>Proceedings of the ACM on Programming Languages</i>. Association for Computing Machinery, 2026. <a href=\"https://doi.org/10.1145/3808296\">https://doi.org/10.1145/3808296</a>.","ista":"Chatterjee K, Goharshady E, Zikelic D. 2026. SuperDP: Differential privacy refutation via supermartingales. Proceedings of the ACM on Programming Languages. 10(PLDI), 218.","mla":"Chatterjee, Krishnendu, et al. “SuperDP: Differential Privacy Refutation via Supermartingales.” <i>Proceedings of the ACM on Programming Languages</i>, vol. 10, no. PLDI, 218, Association for Computing Machinery, 2026, doi:<a href=\"https://doi.org/10.1145/3808296\">10.1145/3808296</a>.","ama":"Chatterjee K, Goharshady E, Zikelic D. 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Wei, C. Hafner, A. Kalinov, P. Synak, and C. Wojtan, “Circles of confidence for multi-label geometry completion,” in <i>Computer Graphics Forum</i>, Bern, Switzerland, vol. 45, no. 5.","short":"Z. Wei, C. Hafner, A. Kalinov, P. Synak, C. Wojtan, in:, Computer Graphics Forum, Wiley, n.d.","apa":"Wei, Z., Hafner, C., Kalinov, A., Synak, P., &#38; Wojtan, C. (n.d.). Circles of confidence for multi-label geometry completion. In <i>Computer Graphics Forum</i> (Vol. 45). Bern, Switzerland: Wiley. <a href=\"https://doi.org/10.1111/cgf.70516\">https://doi.org/10.1111/cgf.70516</a>","ama":"Wei Z, Hafner C, Kalinov A, Synak P, Wojtan C. Circles of confidence for multi-label geometry completion. In: <i>Computer Graphics Forum</i>. Vol 45. 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We introduce a new integral formulation of this problem, which assigns confidence\r\nscores that points are inside or outside, given incomplete boundary geometry. Even though our geometric construction does\r\nnot appear in previous work, we show that it is unexpectedly linked to both the well-established generalized winding number\r\n(GWN) and pseudonormal methods for geometry completion, and it provably reduces to either one of them for specific values\r\nof a control parameter. The results obtained with our method frequently outperform screened Poisson surface reconstruction\r\n(PSR), GWN, and the pseudonormal method in terms of quality, and are at least on par with them on all of our examples. Unlike\r\nthese methods, our algorithm naturally extends to the multi-label setting, in which regions with an arbitrary number of colors\r\nor physical materials can be reconstructed, and non-manifold features such as T-junctions may appear in the interface and\r\nboundary geometry"}],"year":"2026","date_updated":"2026-06-24T05:49:08Z","publication":"Computer Graphics Forum","date_created":"2026-06-23T09:08:41Z","oa":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","corr_author":"1","department":[{"_id":"ChWo"},{"_id":"GradSch"}]},{"abstract":[{"lang":"eng","text":"This artifact provides the source code, benchmarks, and scripts necessary to build and reproduce the experimental results for `SuperDP` (Accepted at PLDI 2026). It also includes instructions for running the tool on user-provided inputs."}],"date_created":"2026-06-24T06:25:29Z","year":"2026","date_updated":"2026-06-24T06:39:38Z","citation":{"ieee":"K. Chatterjee, E. Goharshady, and D. 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