@article{20402, abstract = {The recent classification of the onset of turbulence as a directed percolation (DP) phase transition has been applied to all major shear flows including pipe, channel, Couette and boundary layer flows. A cornerstone of the DP analogy is the memoryless (Poisson) property of turbulent sites. We here show that, for the classic case of channel flow, neither the decay nor the proliferation of turbulent stripes is memoryless. As demonstrated by a standard analysis of the respective survival curves, isolated channel stripes, in the immediate vicinity of the critical point, age. Consequently, the one to one mapping between turbulent stripes and active DP-sites is not fulfilled in this low Reynolds number regime. In addition, the interpretation of turbulence as a chaotic saddle with supertransient properties, the basis of recent theoretical progress, does not apply to individual localized stripes. The discrepancy between channel flow and the transition models established for pipe and Couette flow, illustrates that seemingly minor geometrical differences between flows can give rise to instabilities and growth mechanisms that fundamentally alter the nature of the transition to turbulence.}, author = {Vasudevan, Mukund and Paranjape, Chaitanya S and Sitte, Michael Philip and Yalniz, Gökhan and Hof, Björn}, issn = {2041-1723}, journal = {Nature Communications}, publisher = {Springer Nature}, title = {{Aging and memory of transitional turbulence}}, doi = {10.1038/s41467-025-63044-7}, volume = {16}, year = {2025}, } @article{20370, abstract = {The Huntingtin protein (HTT), named for its role in Huntington’s disease, has been best understood as a scaffolding protein that promotes vesicle transport by molecular motors along microtubules. Here, we show that HTT also interacts with the actin cytoskeleton, and its loss of function disturbs the morphology and function of the axonal growth cone. We demonstrate that HTT organizes F-actin into bundles. Cryo–electron tomography (cryo-ET) and subtomogram averaging (STA) structural analyses reveal that HTT’s N-terminal HEAT and Bridge domains wrap around F-actin, while the C-terminal HEAT domain is displaced; furthermore, HTT dimerizes via the N-HEAT domain to bridge parallel actin filaments separated by ~20 nanometers. Our study provides the structural basis for understanding how HTT interacts with and organizes the actin cytoskeleton.}, author = {Carpentier, Rémi and Kim, Jaesung and Capizzi, Mariacristina and Kim, Hyeongju and Fäßler, Florian and Hansen, Jesse and Kim, Min Jeong and Denarier, Eric and Blot, Béatrice and Degennaro, Marine and Labou, Sophia and Arnal, Isabelle and Marcaida, Maria J. and Peraro, Matteo Dal and Kim, Doory and Schur, Florian KM and Song, Ji-Joon and Humbert, Sandrine}, issn = {2375-2548}, journal = {Science Advances}, number = {38}, publisher = {AAAS}, title = {{Structure of the Huntingtin F-actin complex reveals its role in cytoskeleton organization}}, doi = {10.1126/sciadv.adw4124}, volume = {11}, year = {2025}, } @article{19627, abstract = {Differentially private gradient descent (DP-GD) is a popular algorithm to train deep learning models with provable guarantees on the privacy of the training data. In the last decade, the problem of understanding its performance cost with respect to standard GD has received remarkable attention from the research community, which formally derived upper bounds on the excess population risk RP in different learning settings. However, existing bounds typically degrade with over-parameterization, i.e., as the number of parameters p gets larger than the number of training samples n -- a regime which is ubiquitous in current deep-learning practice. As a result, the lack of theoretical insights leaves practitioners without clear guidance, leading some to reduce the effective number of trainable parameters to improve performance, while others use larger models to achieve better results through scale. In this work, we show that in the popular random features model with quadratic loss, for any sufficiently large p , privacy can be obtained for free, i.e., |RP|=o(1) , not only when the privacy parameter ε has constant order, but also in the strongly private setting ε=o(1) . This challenges the common wisdom that over-parameterization inherently hinders performance in private learning.}, author = {Bombari, Simone and Mondelli, Marco}, issn = {1091-6490}, journal = {Proceedings of the National Academy of Sciences}, number = {15}, publisher = {National Academy of Sciences}, title = {{Privacy for free in the overparameterized regime}}, doi = {10.1073/pnas.2423072122}, volume = {122}, year = {2025}, } @article{20795, abstract = {The tropical climate variability is characterized by various oscillations across a range of timescales. Oscillations that imprint the tropical mean state are generally attributed to slow processes, such as the seasonal cycle or interannual variability. Here, we identify a pronounced tropics-wide intraseasonal oscillation (TWISO) in satellite observations and reanalyses. This oscillation, with a period of 30 to 60 d, is evident across multiple variables and involves interactions between convection, radiation, surface fluxes, and large-scale circulation. It is primarily manifested as convective perturbations in the tropical Indo-Pacific warm pool accompanied by oscillations in the large-scale tropical overturning circulation. Here, we examine the relationship between TWISO, the Madden–Julian Oscillation (MJO), and the instability of radiative-convective equilibrium. Certain phases of TWISO coincide with specific phases of the MJO, suggesting a potential connection between the two. However, although the MJO can amplify the oscillation amplitude of TWISO, it is not essential for TWISO to occur. Finally, due to its broad manifestation across the tropics, TWISO potentially exerts widespread influence on tropical weather and climate at regional scales.}, author = {Bao, Jiawei and Bony, Sandrine and Takasuka, Daisuke and Muller, Caroline J}, issn = {1091-6490}, journal = {Proceedings of the National Academy of Sciences}, number = {48}, publisher = {National Academy of Sciences}, title = {{Tropics-wide intraseasonal oscillations}}, doi = {10.1073/pnas.2511549122}, volume = {122}, year = {2025}, } @article{20929, abstract = {Insulin/insulin-like growth factor signaling inhibits FOXO transcription factors to control development, homeostasis, and aging. Here, we use proximity labeling to identify proteins interacting with the C. elegans FOXO DAF-16. We show that in well-fed, unstressed animals harboring active insulin signaling, DAF-16 forms a complex with the PAR-1/MARK serine/threonine kinase, a key regulator of cell polarity. PAR-1 inhibits DAF-16 accumulation and promotes DAF-16 phosphorylation at S249, at a conserved motif that PAR-1/human MARK2 phosphorylates in vitro. DAF-2 insulin-like receptor signaling stimulates DAF-16 S249 phosphorylation, suggesting DAF-2 activates PAR-1. DAF-2 also promotes PAR-1 expression by inhibiting DAF-16. PAR-1 knockdown, or DAF-16 S249A, prolong lifespan, whereas phosphomimetic DAF-16 S249D suppresses the longevity of daf-2 mutants. At low insulin signaling, DAF-16 proximity labeling highlights transcription factors, chromatin regulators, and DNA repair proteins. One interactor, the zinc finger/homeobox protein ZFH-2/ZFHX3, forms a complex with DAF-16 and prolongs lifespan. Our work provides entry points for hypothesis-driven studies of FOXO function and longevity.}, author = {Artan, Murat and Schön, Hanna and De Bono, Mario}, issn = {2041-1723}, journal = {Nature Communications}, publisher = {Springer Nature}, title = {{Proximity labeling of DAF-16 FOXO highlights aging regulatory proteins}}, doi = {10.1038/s41467-025-66409-0}, volume = {16}, year = {2025}, } @article{20703, abstract = {Glacier melt sustains water discharge from mountain basins during droughts, but ongoing glacier retreat threatens this fundamental capacity. Here, we assess the response of glaciers in the Southern Andes to one of the most severe, persistent, and extensive droughts on record in South America (2010-present), and to projected end-of-century megadroughts. Using glacio-hydrological numerical simulations, we show that despite a mean annual precipitation deficit of 36%, glacier runoff in 2010-2019 remained almost unaltered compared to the preceding decade (2000-2009), sustained by a 10% loss of total ice volume. However, simulations of future glacier evolution indicate that annual and summer glacier runoff could decline by up to 20 ± 11% and 48 ± 6%, respectively, during end-of-century megadroughts compared to pre-2010 levels. Our results project a weakening of the glacier’s buffering role against precipitation deficits during extreme droughts, increasing water scarcity for ecosystems and livelihoods in the mountain regions of South America.}, author = {Ayala, Álvaro and Muñoz-Castro, Eduardo and Farinotti, Daniel and Farías-Barahona, David and Mendoza, Pablo A. and Macdonell, Shelley and Mcphee, James and Vargas, Ximena and Pellicciotti, Francesca}, issn = {2662-4435}, journal = {Communications Earth and Environment}, publisher = {Springer Nature}, title = {{Less water from glaciers during future megadroughts in the Southern Andes}}, doi = {10.1038/s43247-025-02845-6}, volume = {6}, year = {2025}, } @article{20857, abstract = {Evolutionary games provide a flexible mathematical framework for many problems in biology and social evolution. Prisoners’ dilemma, and in particular, the important special case of donation games, represents social dilemmas where cooperation is mutually beneficial, yet defection is preferred by selfish agents. In evolutionary games on networks, the agents interact over a population structure. The existence of population structures that promote cooperative behavior is a fascinating and active research topic. Previous research establishes structures promoting cooperation in the limit of weak selection where the benefit-to-cost ratio β exceeds 1.5. The existence of such structures for medium and strong selection for 1 < ß < 2 and for weak selection for 1 < ß < 1.5 has been a long-standing open question. First, we answer the open questions in the affirmative: For every selection strength and every ß > 1, we construct networks promoting cooperation. Second, we present a robustness result with respect to β and selection strength: Our structures promote cooperation for a range of these parameter values rather than specific parameter values. Finally, we supplement our theoretical results with simulation results on small population structures that show the effectiveness of our construction over well-studied population structures.}, author = {Svoboda, Jakub and Chatterjee, Krishnendu}, issn = {1091-6490}, journal = {Proceedings of the National Academy of Sciences}, number = {51}, pages = {e2524109122}, publisher = {National Academy of Sciences}, title = {{Promoters of cooperation in evolutionary games}}, doi = {10.1073/pnas.2524109122}, volume = {122}, year = {2025}, } @article{19626, abstract = {Active regulation of gene expression, orchestrated by complex interactions of activators and repressors at promoters, controls the fate of organisms. In contrast, basal expression at uninduced promoters is considered to be a dynamically inert mode of nonfunctional “promoter leakiness,” merely a byproduct of transcriptional regulation. Here, we investigate the basal expression mode of the mar operon, the main regulator of intrinsic multiple antibiotic resistance in Escherichia coli, and link its dynamic properties to the noncanonical, yet highly conserved start codon of marR across Enterobacteriaceae. Real-time, single-cell measurements across tens of generations reveal that basal expression consists of rare stochastic gene expression pulses, which maximize variability in wildtype and, surprisingly, transiently accelerate cellular elongation rates. Competition experiments show that basal expression confers fitness advantages to wildtype across several transitions between exponential and stationary growth by shortening lag times. The dynamically rich basal expression of the mar operon has likely been evolutionarily maintained for its role in growth homeostasis of Enterobacteria within the gut environment, thereby allowing other ancillary gene regulatory roles to evolve, e.g., control of costly-to-induce multidrug efflux pumps. Understanding the complex selection forces governing genetic systems involved in intrinsic multidrug resistance is crucial for effective public health measures.}, author = {Jain, Kirti and Hauschild, Robert and Bochkareva, Olga and Römhild, Roderich and Tkačik, Gašper and Guet, Calin C}, issn = {1091-6490}, journal = {Proceedings of the National Academy of Sciences}, number = {15}, publisher = {National Academy of Sciences}, title = {{Pulsatile basal gene expression as a fitness determinant in bacteria}}, doi = {10.1073/pnas.2413709122}, volume = {122}, year = {2025}, } @article{20727, abstract = {Acoustic levitation provides a unique method for manipulating small particles as it completely evades effects from gravity, container walls, or physical handling. These advantages make it a tantalizing platform for studying complex phenomena in many-particle systems. In most standing-wave traps, however, particles interact via acoustic scattering forces that cause them to merge into a single dense object. Here, we introduce a complementary approach that combines acoustic levitation with electrostatic charging to assemble, adapt, and activate complex, separated many-particle systems. The key idea is to superimpose electrostatic repulsion on the intrinsic acoustic attraction, rendering a so-called “mermaid” potential where interactions are attractive at short range and repulsive at long range. By controlling the attraction–repulsion balance, we can levitate expanded structures where all particles are separated, collapsed structures where they are in contact, and hybrid ones consisting of both expanded and collapsed components. We find that collapsed and expanded structures are inherently stable, whereas hybrid ones exhibit transient stability governed by acoustically unstable dimers. Furthermore, we show how electrostatics allow us to adapt between configurations on the fly, either by quasistatic discharge or discrete up/down charge steps. Finally, we demonstrate how large structures experience selective energy pumping from the acoustic field—thrusting some particles into motion while others remain stationary—leading to complex dynamics including coupled rotations and oscillations. Our approach establishes a design space beyond acoustic collapse, offering possibilities to study many-particle systems with complex interactions, while suggesting pathways toward scalable integration into materials processing and other applications.}, author = {Shi, Sue and Hübl, Maximilian and Grosjean, Galien M and Goodrich, Carl Peter and Waitukaitis, Scott R}, issn = {1091-6490}, journal = {Proceedings of the National Academy of Sciences}, number = {50}, pages = {e2516865122}, publisher = {National Academy of Sciences}, title = {{Electrostatics overcome acoustic collapse to assemble, adapt, and activate levitated matter}}, doi = {10.1073/pnas.2516865122}, volume = {122}, year = {2025}, } @article{20026, abstract = {Deep Convective Systems (DCSs) reaching scales of 100–1000 km play a pivotal role as the primary precipitation source in the tropics. Those systems can have large cloud shields, and thus not only affect severe precipitation patterns but also play a crucial part in modulating the tropical radiation budget. Understanding the complex factors that control how these systems grow and how they will behave in a warming climate remain fundamental challenges. Research efforts have been directed, on one hand, towards understanding the environmental control on these systems, and on the other hand, towards exploring the internal potential of systems to develop and self-aggregate in idealized simulations. However, we still lack understanding on the relative role of the environment and internal feedbacks on DCS mature size and why. The novel high-resolution global SAM simulation from the DYAMOND project, combined with the TOOCAN Lagrangian tracking of DCSs and machine learning tools, offers an unprecedented opportunity to explore this question. We find that a system’s growth rate during the first 2 h of development predicts its final size with a Pearson correlation coefficient of 0.65. Beyond this period, growth rate emerges as the strongest predictor. However, in the early stages, additional factors–such as ice water path heterogeneity, migration distance, interactions with neighboring systems, and deep shear–play a more significant role. Our study quantitatively assesses the relative influence of internal versus external factors on the mature cloud shield size. Our results show that system-intrinsic properties exert a stronger influence than environmental conditions, suggesting that the initial environment does not strictly constrain final system size, particularly for larger systems where internal dynamics dominate.}, author = {Abramian, Sophie and Muller, Caroline J and Risi, Camille and Fiolleau, Thomas and Roca, Rémy}, issn = {2397-3722}, journal = {npj Climate and Atmospheric Science}, publisher = {Springer Nature}, title = {{How key features of early development shape deep convective systems}}, doi = {10.1038/s41612-025-01154-1}, volume = {8}, year = {2025}, } @article{19728, abstract = {Root system integrates multiple environmental cues, chiefly gravity and soil humidity, to anchor plants in soil and forage for water. While the mechanism of auxin-mediated root gravitropism is comparably well-understood, the root’s capability to grow toward moist soil for water uptake and drought avoidance, termed root hydrotropism, remains largely mysterious. Here, we provide key insights into the mechanism of hydrotropic growth and assign a role to the master regulator of hydrotropism, MIZU-KUSSEI 1 (MIZ1). We show that efficient hydrotropism requires the attenuation of antagonistically acting gravitropism, which is inhibited under drought conditions. Drought stress interferes with subcellular trafficking and the lateral mobility of PIN auxin transporters, which are polarly localized at the root cell plasma membranes. This leads to defects in PIN2 polarity and gravity-induced polarization of PIN3, ultimately inhibiting gravity-induced auxin redistribution and root bending. The miz1 mutant is defective in all these regulations, and in support of MIZ1’s action on PINs, pin mutations rescue the hydrotropic defects in the miz1 mutant. These observations identify a mechanism for how drought via MIZ1 attenuates gravitropism to promote root hydrotropism for efficient water foraging under drought conditions.}, author = {Zhang, Yuzhou and Bao, Zhulatai and Smoljan, Adrijana and Liu, Yifan and Wang, Huihui and Friml, Jiří}, issn = {1091-6490}, journal = {Proceedings of the National Academy of Sciences}, number = {20}, publisher = {National Academy of Sciences}, title = {{Foraging for water by MIZ1-mediated antagonism between root gravitropism and hydrotropism}}, doi = {10.1073/pnas.2427315122}, volume = {122}, year = {2025}, } @article{19963, abstract = {The acquisition of cellular identity requires large-scale alterations in cellular state. The noncanonical proteasome activator PSME3 is known to regulate diverse cellular processes, but its importance for differentiation remains unclear. Here, we demonstrate that PSME3 binds dynamically to highly active promoters over the course of differentiation. However, loss of PSME3 does not globally affect mRNA transcription. We find instead that PSME3 influences the levels of several adhesion-related proteins and acts upstream of the HSP90 co-chaperone NUDC to regulate cell motility and myoblast differentiation in a proteasome-independent manner. Our findings reveal several new facets of PSME3 functionality and highlight its importance for the differentiation of myogenic cells.}, author = {Kuhn, Kenneth D and Cho, Ukrae H. and Hetzer, Martin W}, issn = {2575-1077}, journal = {Life Science Alliance}, number = {9}, publisher = {Embo Press}, title = {{PSME3 regulates migration and differentiation of myoblasts}}, doi = {10.26508/lsa.202503208}, volume = {8}, year = {2025}, } @misc{19294, abstract = {Active regulation of gene expression, orchestrated by complex interactions of activators and repressors at promoters, controls the fate of organisms. In contrast, basal expression at uninduced promoters is considered to be a dynamically inert mode of non-functional “promoter leakiness”, merely a byproduct of transcriptional regulation. Here, we investigate the basal expression mode of the mar operon, the main regulator of intrinsic multiple antibiotic resistance in Escherichia coli, and link its dynamic properties to the non-canonical, yet highly conserved start codon of marR across Enterobacteriaceae. Real-time, single-cell measurements across tens of generations reveal that basal expression consists of rare stochastic gene expression pulses, which maximize variability in wildtype and, surprisingly, transiently accelerate cellular elongation rates. Competition experiments show that basal expression confers fitness advantages to wildtype across several transitions between exponential and stationary growth by shortening lag times. The dynamically rich basal expression of the mar operon has likely been evolutionarily maintained for its role in growth homeostasis of Enterobacteria within the gut environment, thereby allowing other ancillary gene regulatory roles to evolve, e.g. control of costly-to-induce multi-drug efflux pumps. Understanding the complex selection forces governing genetic systems involved in intrinsic multi-drug resistance is crucial for effective public health measures.}, author = {Jain, Kirti and Hauschild, Robert and Bochkareva, Olga and Römhild, Roderich and Tkačik, Gašper and Guet, Calin C}, publisher = {Institute of Science and Technology Austria}, title = {{Data for "Pulsatile basal gene expression as a fitness determinant in bacteria"}}, doi = {10.15479/AT:ISTA:19294}, year = {2025}, } @misc{20749, abstract = {Datasets and code for publication "Electrostatics overcome acoustic collapse to assemble, adapt, and activate levitated matter"}, author = {Shi, Sue}, publisher = {Zenodo}, title = {{Datasets and code for manuscript "Electrostatics overcome acoustic collapse to assemble, adapt, and activate levitated matter"}}, doi = {10.5281/ZENODO.15752991}, year = {2025}, } @article{20289, abstract = {Cell and tissue movement in development, cancer invasion, and immune response relies on chemical or mechanical guidance cues. In many systems, this behavior is locally directed by self-generated signaling gradients rather than long-range, prepatterned cues. However, how heterogeneous mixtures of cells interact nonreciprocally and navigate through self-generated gradients remains largely unexplored. Here, we introduce a theoretical framework for the self-organized chemotaxis of heterogeneous cell populations. We find that the relative chemotactic sensitivities of different cell populations control their long-time coupling and comigration dynamics, with boundary conditions such as external cell and attractant reservoirs substantially influencing the migration patterns. Our model predicts an optimal parameter regime that enables robust and colocalized migration. We test our theoretical predictions with in vitro experiments demonstrating the comigration of distinct immune cell populations, and quantitatively reproduce observed migration patterns under wild-type and perturbed conditions. Interestingly, immune cell comigration occurs close to the predicted optimal regime. Finally, we incorporate mechanical interactions into our framework, revealing a nontrivial interplay between chemotactic and mechanical nonreciprocity in driving collective migration. Together, our findings suggest that self-generated chemotaxis is a robust strategy for the navigation of mixed cell populations.}, author = {Ucar, Mehmet C and Zane, Alsberga and Alanko, Jonna H and Sixt, Michael K and Hannezo, Edouard B}, issn = {1091-6490}, journal = {Proceedings of the National Academy of Sciences}, number = {34}, publisher = {National Academy of Sciences}, title = {{Self-generated chemotaxis of mixed cell populations}}, doi = {10.1073/pnas.2504064122}, volume = {122}, year = {2025}, } @article{20424, abstract = {Homeostasis relies on a precise balance of fate choices between renewal and differentiation. Although progress has been done to characterize the dynamics of single-cell fate choices, their underlying mechanistic basis often remains unclear. Concentrating on skin epidermis as a paradigm for multilayered tissues with complex fate choices, we develop a 3D vertex-based model with proliferation in the basal layer, showing that mechanical competition for space naturally gives rise to homeostasis and neutral drift dynamics that are seen experimentally. We then explore the effect of introducing mechanical heterogeneities between cellular subpopulations. We uncover that relatively small tension heterogeneities, reflected by distinct morphological changes in single-cell shapes, can be sufficient to heavily tilt cellular dynamics towards exponential growth. We thus derive a master relationship between cell shape and long-term clonal dynamics, which we validated during basal cell carcinoma initiation in mouse epidermis. Altogether, we propose a theoretical framework to link mechanical forces, quantitative cellular morphologies and cellular fate outcomes in complex tissues.}, author = {Sahu, Preeti and Monteiro-Ferreira, Sara and Canato, Sara and Soares, Raquel Maia and Sánchez-Danés, Adriana and Hannezo, Edouard B}, issn = {2041-1723}, journal = {Nature Communications}, publisher = {Springer Nature}, title = {{Mechanical control of cell fate decisions in the skin epidermis}}, doi = {10.1038/s41467-025-62882-9}, volume = {16}, year = {2025}, } @article{20708, abstract = {In equilibrium, the physical properties of matter are set by the interactions between the constituents. In contrast, the energy input of the individual components controls the behavior of synthetic or living active matter. Great progress has been made in understanding the emergent phenomena in active fluids, though their inability to resist shear forces hinders their practical use. This motivates the exploration of active solids as shape-shifting materials, yet, we lack controlled synthetic systems to devise active solids with unconventional properties. Here we build active elastic beams from dozens of active colloids and unveil complex emergent behaviors such as self-oscillations or persistent rotations. Developing tensile tests at the microscale, we show that the active beams are ultrasoft materials, with large (nonequilibrium) fluctuations. Combining experiments, theory, and stochastic inference, we show that the dynamics of the active beams can be mapped on different phase transitions which are tuned by boundary conditions. More quantitatively, we assess all relevant parameters by independent measurements or first-principles calculations, and find that our theoretical description agrees with the experimental observations. Our results demonstrate that the simple addition of activity to an elastic beam unveils novel physics and can inspire design strategies for active solids and functional microscopic machines.}, author = {Martinet, Quentin and Li, Yuting I and Aubret, A. and Hannezo, Edouard B and Palacci, Jérémie A}, issn = {2160-3308}, journal = {Physical Review X}, number = {4}, publisher = {American Physical Society}, title = {{Emergent dynamics of active elastic microbeams}}, doi = {10.1103/rjk2-q2wh}, volume = {15}, year = {2025}, } @article{19073, abstract = {The rapid development of superconducting quantum hardware is expected to run into substantial restrictions on scalability because error correction in a cryogenic environment has stringent input–output requirements. Classical data centres rely on fibre-optic interconnects to remove similar networking bottlenecks. In the same spirit, ultracold electro-optic links have been proposed and used to generate qubit control signals, or to replace cryogenic readout electronics. So far, these approaches have suffered from either low efficiency, low bandwidth or additional noise. Here we realize radio-over-fibre qubit readout at millikelvin temperatures. We use one device to simultaneously perform upconversion and downconversion between microwave and optical frequencies and so do not require any active or passive cryogenic microwave equipment. We demonstrate all-optical single-shot readout in a circulator-free readout scheme. Importantly, we do not observe any direct radiation impact on the qubit state, despite the absence of shielding elements. This compatibility between superconducting circuits and telecom-wavelength light is not only a prerequisite to establish modular quantum networks, but it is also relevant for multiplexed readout of superconducting photon detectors and classical superconducting logic.}, author = {Arnold, Georg M and Werner, Thomas and Sahu, Rishabh and Kapoor, Lucky and Qiu, Liu and Fink, Johannes M}, issn = {1745-2481}, journal = {Nature Physics}, publisher = {Springer Nature}, title = {{All-optical superconducting qubit readout}}, doi = {10.1038/s41567-024-02741-4}, volume = {21}, year = {2025}, } @unpublished{21920, abstract = {Vertebrates display remarkable diversity of sensorimotor behaviors, each adapted to distinct ecological and survival demands. This diversity raises fundamental questions about the evolutionary origin of motor control: do conserved spinal circuits underlie these behaviors, and how have they diverged across species. Recent studies detail spinal cell-type architecture in mammals but comparable, high-resolution atlases of the non-mammalian spinal cord are lacking. Here, we compare spinal cord cell types between fish, frogs, mice and humans, spanning ∼450 million years of evolution. Across species, we define highly conserved programs of cell type specification that segregate spinal neurons into nearly identical cardinal classes during development. This contrasts with adult stages, when spinal cell-type composition selectively diverges for excitatory neuron subpopulations. Using spatial transcriptomics, we localize this species divergence to the superficial, dorsal spinal cord, where variant neuropeptide expression defines mammalian-specific cell types. The most dorsal spinal cord thus emerges as a recently evolved hub for sensory integration in mammals, a neospinal cord analogous to the neocortex.}, author = {Ignatyev, Yuri and Papadopoulos, Stavros and Soretić, Mateja and Yeung, Jake and Lin, Tzi-Yang and Tanaka, Elly M and Peshkin, Leonid and Levine, Ariel J and Gabitto, Mariano I and Sweeney, Lora Beatrice Jaeger}, booktitle = {bioRxiv}, title = {{Innovations in spinal cord cell type heterogeneity across vertebrate evolution}}, doi = {10.1101/2025.10.09.680955}, year = {2025}, } @article{21912, abstract = {The mammalian fatty acid synthase (FASN) enzyme is a dynamic multienzyme that belongs to the megasynthase family. In mammals, a single gene encodes six catalytically active domains and a flexibly tethered acyl carrier protein (ACP) domain that shuttles intermediates between active sites for fatty acid biosynthesis1. FASN is an essential enzyme in mammalian development through the role that fatty acids have in membrane formation, energy storage, cell signalling and protein modifications. Thus, FASN is a promising target for treatment of a large variety of diseases including cancer, metabolic dysfunction-associated fatty liver disease, and viral and parasite infections2,3. The multi-faceted mechanism of FASN and the dynamic nature of the protein, in particular of the ACP, have made it challenging to understand at the molecular level. Here we report cryo-electron microscopy structures of human FASN in a multitude of conformational states with NADPH and NADP+ plus acetoacetyl-CoA present, including structures with the ACP stalled at the dehydratase (DH) and enoyl-reductase (ER) domains. We show that FASN activity in vitro and de novo lipogenesis in cells is inhibited by mutations at the ACP–DH and ACP–ER interfaces. Together, these studies provide new molecular insights into the dynamic nature of FASN and the ACP shuttling mechanism, with implications for developing improved FASN-targeted therapeutics.}, author = {Schultz, Kollin and Costa-Pinheiro, Pedro and Gardner, Lauren and Pinheiro, Laura V. and Ramirez-Solis, Julio and Gardner, Sarah M. and Wellen, Kathryn E. and Marmorstein, Ronen}, issn = {1476-4687}, journal = {Nature}, number = {8062}, pages = {520--528}, publisher = {Springer Nature}, title = {{Snapshots of acyl carrier protein shuttling in human fatty acid synthase}}, doi = {10.1038/s41586-025-08587-x}, volume = {641}, year = {2025}, }