@phdthesis{20991,
  abstract     = {Rapid local adaptation to new environments is critical for species persistence, especially in introduced populations. The evolutionary success of these populations is fundamentally dictated by the organization of genetic variation—the genomic architecture—in the face of severe demographic constraints, such as the founder effects and genetic bottlenecks that frequently accompany colonization. A central question in evolutionary biology is whether rapid adaptation relies on major-effect loci, such as chromosomal inversions, or on many small-effect loci dispersed across the genome. Furthermore, the genomic architecture strongly influences the extent to which evolutionary outcomes are predictable. Using introduced populations of the marine snail, Littorina saxatilis, as a model, this thesis investigates how genetic variation and genomic structure drive adaptation following introduction. We employed a population genomics approach on experimentally and accidentally introduced populations to dissect the specific genomic features that underpin divergence in newly colonized environments.

In Chapter 2, we tested the predictability of local adaptation through an uncommon 30-year transplant experiment in nature. By distinguishing allele and chromosomal inversion frequency changes from neutral expectations, we found that evolutionary change was highly predictable at the macro-scale (phenotypes and chromosomal inversions), but less robust at the level of individual collinear loci. This result demonstrates that evolution can be predictable when a population possesses sufficient standing genetic variation (SGV), with chromosomal inversions acting as key integrated units that facilitate a rapid response to selection. Building on this, Chapter 3 applied whole-genome sequencing to three accidentally introduced populations (Venice, San Francisco, and Redwood City) to investigate their likely source and genomic patterns of divergence. We identified genomic regions of remarkable divergence potentially associated with local adaptation, and likely fuelled by SGV, while explicitly acknowledging the difficulty in disentangling selection signals from the genome-wide effects of demographic processes. Furthermore, we found that the divergence patterns relied extensively on the collinear genome in these introduced populations, and less clearly on the chromosomal inversions. This observation contrasts with local adaptation observed in the experimental system that relied on both collinear loci and highly selected chromosomal inversions, highlighting how demographic history and genomic architecture influence the detectable signature of local adaptation.

A major limitation to conducting large-scale comparative evolutionary studies is the lack of data standardization, which prevents the integration of community knowledge and high-resolution environmental and genetic data. Chapter 4 addresses this by developing a community database for the Littorina system. This platform implements standardized protocols for the integration of diverse phenotypic and environmental data from multiple Littorina species. Likewise, the platform also centralizes the availability of associated genomic data through links to external repositories. This database represents a crucial tool to test complex, large-scale evolutionary hypotheses.

Collectively, this thesis strongly reinforces the fundamental importance of SGV as the raw material for successful local adaptation, a conclusion supported by evidence in both experimental and accidental introductions. Furthermore, this work highlights the critical role of the genomic architecture—specifically chromosomal inversions—in driving the predictability and effectiveness of adaptive responses. Our findings underscore how the interplay between SGV and genomic architecture dictates the trajectory and detectability of evolution in colonizing populations, while simultaneously providing a necessary tool to advance comparative evolutionary genomics in emerging model organisms.},
  author       = {Garcia Castillo, Diego Fernando},
  isbn         = {978-3-99078-077-0},
  issn         = {2663-337X},
  pages        = {199},
  publisher    = {Institute of Science and Technology Austria},
  title        = {{The genomic architecture of local adaptation in introduced populations}},
  doi          = {10.15479/AT-ISTA-20991},
  year         = {2026},
}

@article{21537,
  abstract     = {Nanophotonics has revolutionized the control of light-matter interactions in various fields of fundamental science and technology. In this work, we propose Implosion Fabrication (ImpFab) as a versatile nanophotonics fabrication platform providing the highest spatial resolution, material versatility, and full volumetric control. ImpFab uniquely combines top-down lithography with bottom-up nanoparticle assembly within a hydrogel scaffold, enabling precise control over optical material properties, such as refractive index, by adjusting printing parameters. We showcase the potential of ImpFab by fabricating three-dimensional photonic crystals and quasicrystals, as well as demonstrating optical structures with spatially modulated unit cell material properties. Our results highlight the potential of ImpFab in producing nanostructures with tailored optical functionalities, which are crucial for applications in sensing, imaging, and information processing, and opening new avenues in developing non-Hermitian photonic systems with spatially controlled gain and loss.},
  author       = {Salamin, Yannick and Yang, Gaojie and Mills, Brian and Grossi Fonseca, André and Roques-Carmes, Charles and Yang, Quansan and Beroz, Justin and Kooi, Steven E. and de Miguel Comella, Marc and Mak, Kiran and Vaidya, Sachin and Oran, Daniel and Swain, Corban and Sun, Yi and Maayani, Shai and Sloan, Jamison and Amin Elfadil Elawad, Amel and Lopez, Josue J. and Boyden, Edward S. and Soljačić, Marin},
  issn         = {2047-7538},
  journal      = {Light: Science & Applications},
  publisher    = {Springer Nature},
  title        = {{Three-dimensional nanophotonics with spatially modulated optical properties}},
  doi          = {10.1038/s41377-025-02166-5},
  volume       = {15},
  year         = {2026},
}

@article{21555,
  abstract     = {Spin-polarized electron beam sources enable studies of spin-dependent electric and magnetic effects at the nanoscale. We propose a method of creating spin-polarized electrons on an integrated photonics chip by laser-driven nanophotonic fields. A two-stage interaction separated by a free-space drift length is proposed, where the first stage and drift length introduces spin-dependent characteristics into the probability distribution of the electron wave function. The second stage uses an adjusted optical near field to rotate the spin states utilizing the spin-dependent wave-packet distribution to produce electrons with high ensemble average spin expectation values. This platform provides an integrated and compact method to generate spin-polarized electrons, implementable with millimeter scale chips and tabletop lasers.},
  author       = {Woodahl, Clarisse and Murillo, Melanie and Roques-Carmes, Charles and Karnieli, Aviv and Miller, David A. B. and Solgaard, Olav},
  issn         = {1079-7114},
  journal      = {Physical Review Letters},
  number       = {6},
  publisher    = {American Physical Society},
  title        = {{On-chip laser-driven free-electron spin polarizer}},
  doi          = {10.1103/3c1m-d3hh},
  volume       = {136},
  year         = {2026},
}

@article{21583,
  abstract     = {Non-Hermiticity naturally arises in physical systems that exchange energy with their environment. The presence of non-Hermiticity leads to many topological physics phenomena and device applications. In the non-Hermitian energy band theory, the foundation of these physics and applications, both energies and wave vectors take complex values. The energy bands thus become a Riemann surface, and such an energy-band Riemann surface underlies all important signatures of non-Hermitian topology. Despite a long history and recent theoretical interests, the energy-band Riemann surface has not been experimentally studied. Here, we provide a photonic observation of the energy-band Riemann surface of a non-Hermitian system. This is achieved by a tunable imaginary gauge transformation in photonic synthetic frequency dimensions. From measured topologies of the Riemann surface, we reveal the complex-energy winding, the open-boundary-condition spectrum, the generalized Brillouin zone, and the branch points. Our findings demonstrate a unified framework in the studies of diverse effects in non-Hermitian topological physics through an experimental observation of energy-band Riemann surfaces.},
  author       = {Cheng, Dali and Wang, Heming and Zhong, Janet and Lustig, Eran and Roques-Carmes, Charles and Fan, Shanhui},
  issn         = {2375-2548},
  journal      = {Science Advances},
  number       = {12},
  publisher    = {American Association for the Advancement of Science},
  title        = {{Experimental observation of energy-band Riemann surface}},
  doi          = {10.1126/sciadv.aec8239},
  volume       = {12},
  year         = {2026},
}

@article{21764,
  abstract     = {Colloidal fluids can exhibit complex phase behavior and determining phase diagrams via experiments or computer simulations can be laborious. We demonstrate that the dispersion relation ω(k), obtained from dynamical density functional theory for the uniform density system, is a highly versatile tool for predicting where in the phase diagram complex crystals form. The sign of ω(k) determines whether density modes with wave number k grow or decay over time. We demonstrate the predictive power by investigating the complex phase behavior of particles interacting via core-shoulder pair potentials. With complementary Monte Carlo simulations, we show that regions of the phase diagram where ωðkÞ has one or several unstable (growing) wave numbers are also where crystalline phases occur. Going further, by tuning these
unstable wave numbers via the interaction-potential and state-point parameters, we design systems with quasicrystals in the phase diagram. We identify a system with a certain shoulder range exhibiting at least ten different phases. Our general approach accelerates considerably the mapping of complex phase diagrams, crucial for the design of new materials.},
  author       = {Wassermair, Michael and Kahl, Gerhard and Roth, Roland and Archer, Andrew J.},
  issn         = {1079-7114},
  journal      = {Physical Review Letters},
  number       = {14},
  publisher    = {American Physical Society},
  title        = {{Navigating complex phase diagrams in soft matter systems}},
  doi          = {10.1103/nbvt-fgjy},
  volume       = {136},
  year         = {2026},
}

@article{21765,
  abstract     = {Dielectric particles of the same material exchange electrical charge during collisions or sliding contacts, yet the underlying charge-exchange mechanism is still not understood. The fact that particles can become highly charged as a result of this effect has significant consequences for many settings, both in nature and industry, such as thunderstorms, volcanic eruptions, particle aggregation during meteorite and planet formation, and the clogging of industrial granular systems. Toward understanding these systems, great efforts have been made to develop precise in situ measurements for particle charge, e.g., to determine ensemble charge distributions or measure exchange during individual contacts. Here, we present experimental results concerning the particle size scaling of the stationary-state charge distributions of oxide particles in the sub-millimeter range. We measure the charge distributions for large ensembles of monodisperse ZrO2:SiO2 composite spheres, ranging from 172 to 545µ⁢m in diameter. These distributions are non-Gaussian and collapse to a single master curve when plotted as functions of the surface charge density Σ=𝑞/4⁢𝜋⁢𝑅2. X-ray fluorescence and atomic force microscopy measurements show that the differences in the measured charge distributions are not due to variations in chemical composition or surface roughness, but rather to size alone. Our findings provide constraints on microscopic models for charge exchange, namely that they should lead to steady-state distributions that are non-Gaussian and scale in a specific way with particle size.},
  author       = {Lara, Macarena and Flores, Marcos and Castillo, Gustavo and Tassara, Santiago and Waitukaitis, Scott R and Mujica, Nicolás},
  issn         = {2475-9953},
  journal      = {Physical Review Materials},
  number       = {4},
  publisher    = {American Physical Society},
  title        = {{Particle size scaling of non-Gaussian granular charge distributions}},
  doi          = {10.1103/qw6t-xqdw},
  volume       = {10},
  year         = {2026},
}

@article{21743,
  abstract     = {We present symplectic structures on the shape space of unparameterized space curves that generalize the classical Marsden–Weinstein structure. Our method integrates the Liouville 1-form of the Marsden–Weinstein structure with Riemannian structures that have been introduced in mathematical shape analysis. We also derive Hamiltonian vector fields for several classical Hamiltonian functions with respect to these new symplectic structures.},
  author       = {Bauer, Martin and Ishida, Sadashige and Michor, Peter W.},
  issn         = {1432-1467},
  journal      = {Journal of Nonlinear Science},
  number       = {2},
  publisher    = {Springer Nature},
  title        = {{Symplectic structures on the space of space curves}},
  doi          = {10.1007/s00332-026-10266-8},
  volume       = {36},
  year         = {2026},
}

@unpublished{21737,
  abstract     = {In calculus, l'Hopital's rule provides a simple way to evaluate the limits of quotient functions when both the numerator and denominator vanish. But what happens when we move beyond real functions on a real interval? In this article, we study when the quotient of two complex-valued functions in higher dimension can be defined continuously at the points where both functions vanish. Surprisingly, the answer is far subtler than in the real-valued setting. We provide a complete characterization for the continuity of the quotient function. We also point out why extending this result to smoother quotients remains an intriguing challenge.},
  author       = {Chern, Albert and Ishida, Sadashige},
  booktitle    = {arXiv},
  keywords     = {l’Hopital theorem, complex functions},
  title        = {{L'Hopital rules for complex-valued functions in higher dimensions}},
  doi          = {10.48550/ARXIV.2602.09958},
  year         = {2026},
}

@article{21274,
  abstract     = {Many white dwarfs are observed in compact double white dwarf binaries, and through the emission of gravitational waves, a large fraction are destined to merge. The merger remnants that do not explode in a Type Ia supernova are expected to initially be rapidly rotating and highly magnetized. In this work, we present our discovery of the variable white dwarf ZTF J200832.79+444939.67, hereafter ZTF J2008+4449, as a likely merger remnant showing signs of circumstellar material without a stellar or substellar companion. The nature of ZTF J2008+4449 as a merger remnant is supported by its physical properties: it is hot (35 500 ± 300 K) and massive (1.12 ± 0.03 M
                    <jats:sub>⊙</jats:sub>
                    ), rapidly rotating with a period of ≈6.6 minutes, and likely possesses exceptionally strong magnetic fields (∼400−600 MG) at its surface. Remarkably, we detect a significant period derivative of (1.80 ± 0.09)×10
                    <jats:sup>−12</jats:sup>
                    s/s, indicating that the white dwarf is spinning down, and a soft X-ray emission that is inconsistent with photospheric emission. As the presence of a mass-transferring stellar or brown dwarf companion is excluded by infrared photometry, the detected spin-down and X-ray emission could be tell-tale signs of a magnetically driven wind or of interaction with circumstellar material, possibly originating from the fallback of gravitationally bound merger ejecta or from the tidal disruption of a planetary object. We also detect Balmer emission, which requires the presence of ionized hydrogen in the vicinity of the white dwarf, showing Doppler shifts as high as ≈2000 km s
                    <jats:sup>−1</jats:sup>
                    . The unusual variability of the Balmer emission on the spin period of the white dwarf is consistent with the trapping of a half ring of ionized gas in the magnetosphere of the white dwarf.
                  </jats:p>},
  author       = {Cristea, Andrei-Alexandru and Caiazzo, Ilaria and Cunningham, Tim and Raymond, John C. and Vennes, Stephane and Kawka, Adela and Desai, Aayush A and Miller, David R. and Hermes, J. J. and Fuller, Jim and Heyl, Jeremy and van Roestel, Jan and Burdge, Kevin B. and Rodriguez, Antonio C. and Pelisoli, Ingrid and Gänsicke, Boris T. and Szkody, Paula and Kenyon, Scott J. and Vanderbosch, Zach and Drake, Andrew and Ferrario, Lilia and Wickramasinghe, Dayal and Karambelkar, Viraj R. and Justham, Stephen and Pakmor, Ruediger and El-Badry, Kareem and Prince, Thomas and Kulkarni, S. R. and Graham, Matthew J. and Masci, Frank J. and Groom, Steven L. and Purdum, Josiah and Dekany, Richard and Bellm, Eric C.},
  issn         = {1432-0746},
  journal      = {Astronomy & Astrophysics},
  publisher    = {EDP Sciences},
  title        = {{A half ring of ionized circumstellar material trapped in the magnetosphere of a white dwarf merger remnant}},
  doi          = {10.1051/0004-6361/202556432},
  volume       = {706},
  year         = {2026},
}

@article{21485,
  abstract     = {Insulating oxides are among the most abundant solid materials in the universe1,2,3. Of the many ways in which they influence natural phenomena, perhaps the most consequential is their capacity to transfer electrical charge during contact4,5,6,7,8,9,10—which occurs even between samples of the same oxide—yet the symmetry-breaking parameter that causes this remains unidentified11,12. Here we show that adventitious carbonaceous molecules adsorbed from the environment are the symmetry-breaking factor in same-material oxide contact electrification (CE). We use acoustic levitation to measure charge exchange between a sphere and a plate composed of identical amorphous silicon dioxide (SiO2). Although charging polarity is random for co-prepared samples, we control it with baking or plasma treatment. Observing the charge-exchange relaxation afterwards, we see dynamics over a timescale of hours and connect this directly to the presence of adventitious carbon with time-of-flight mass spectrometry, low-energy ion scattering and infrared spectroscopy. Going further, we confirm that adventitious carbon can even determine charge exchange among different oxides. Our results identify the symmetry-breaking parameter that causes insulating oxides to exchange charge in settings ranging from desert sands4 to volcanic plumes5,6, while simultaneously highlighting an overlooked factor in CE more broadly.},
  author       = {Grosjean, Galien M and Ostermann, Markus and Sauer, Markus and Hahn, Michael and Pichler, Christian M. and Fahrnberger, Florian and Pertl, Felix and Balazs, Daniel and Link, Mason M. and Kim, Seong H. and Schrader, Devin L. and Blanco, Adriana and Gracia, Francisco and Mujica, Nicolás and Waitukaitis, Scott R},
  issn         = {1476-4687},
  journal      = {Nature},
  number       = {8106},
  pages        = {626--631},
  publisher    = {Springer Nature},
  title        = {{Adventitious carbon breaks symmetry in oxide contact electrification}},
  doi          = {10.1038/s41586-025-10088-w},
  volume       = {651},
  year         = {2026},
}

@article{21015,
  abstract     = {Early embryo geometry is one of the most invariant species-specific traits, yet its role in ensuring developmental reproducibility and robustness remains underexplored. Here we show that in zebrafish, the geometry of the fertilized egg—specifically its curvature and volume—serves as a critical initial condition triggering a cascade of events that influence development. The embryo geometry guides patterned asymmetric cell divisions in the blastoderm, generating radial gradients of cell volume and nucleocytoplasmic ratio. These gradients generate mitotic phase waves, with the nucleocytoplasmic ratio determining individual cell cycle periods independently of other cells. We demonstrate that reducing cell autonomy reshapes these waves, emphasizing the instructive role of geometry-derived volume patterns in setting the intrinsic period of the cell cycle oscillator. In addition to organizing cell cycles, early embryo geometry spatially patterns zygotic genome activation at the midblastula transition, a key step in establishing embryonic autonomy. Disrupting the embryo shape alters the zygotic genome activation pattern and causes ectopic germ layer specification, underscoring the developmental significance of geometry. Together, our findings reveal a symmetry-breaking function of early embryo geometry in coordinating cell cycle and transcriptional patterning.},
  author       = {Mishra, Nikhil and Li, Yuting I and Hannezo, Edouard B and Heisenberg, Carl-Philipp J},
  issn         = {1745-2481},
  journal      = {Nature Physics},
  pages        = {139--150},
  publisher    = {Springer Nature},
  title        = {{Geometry-driven asymmetric cell divisions pattern cell cycles and zygotic genome activation in the zebrafish embryo}},
  doi          = {10.1038/s41567-025-03122-1},
  volume       = {22},
  year         = {2026},
}

@article{21382,
  abstract     = {The exceptional energy-harvesting efficiency of lead-halide perovskites arises from unusually long photocarrier diffusion lengths and recombination lifetimes that persist even in defect-rich, solution-grown samples. Paradoxically, perovskites are also known for having very short exciton decay times. Here, we resolve this apparent contradiction by showing that key optoelectronic properties of perovskites can be explained by localized flexoelectric polarization confined to interfaces between domains of spontaneous strain. Using birefringence imaging, electrochemical staining, and zero-bias photocurrent measurements, we visualize the domain structure and directly probe the associated internal fields in nominally cubic single crystals of methylammonium lead bromide. We demonstrate that localized flexoelectric fields spatially separate electrons and holes to opposite sides of domain walls, exponentially suppressing recombination. Domain walls thus act as efficient mesoscopic transport channels for long-lived photocarriers, microscopically linking structural heterogeneity to charge transport and offering mechanistically informed design principles for perovskite solar-energy technologies.},
  author       = {Rak, Dmytro and Lorenc, Dusan and Balazs, Daniel and Zhumekenov, Ayan A. and Bakr, Osman M. and Alpichshev, Zhanybek},
  issn         = {2041-1723},
  journal      = {Nature Communications},
  publisher    = {Springer Nature},
  title        = {{Flexoelectric domain walls enable charge separation and transport in cubic perovskites}},
  doi          = {10.1038/s41467-026-68660-5},
  volume       = {17},
  year         = {2026},
}

@article{21488,
  abstract     = {Human height is a model for the genetic analysis of complex traits, and recent studies suggest the presence of thousands of common genetic variant associations and hundreds of low-frequency/rare variants. Here, we develop a new algorithmic paradigm based on approximate message passing (genomic vector approximate message passing [gVAMP]) for identifying DNA sequence variants associated with complex traits and common diseases in large-scale whole-genome sequencing (WGS) data. We show that gVAMP accurately localizes associations to variants with the correct frequency and position in the DNA, outperforming existing fine-mapping methods in selecting the appropriate genetic variants within WGS data. We then apply gVAMP to jointly model the relationship of tens of millions of WGS variants with human height in hundreds of thousands of UK Biobank individuals. We identify 59 rare variants and gene burden scores alongside many hundreds of DNA regions containing common variant associations and show that understanding the genetic basis of complex traits will require the joint analysis of hundreds of millions of variables measured on millions of people. The polygenic risk scores obtained from gVAMP have high accuracy (including a prediction accuracy of ∼46% for human height) and outperform current methods for downstream tasks such as mixed linear model association testing across 13 UK Biobank traits. In conclusion, gVAMP offers a scalable foundation for a wider range of analyses in WGS data.},
  author       = {Depope, Al and Bajzik, Jakub and Mondelli, Marco and Robinson, Matthew Richard},
  issn         = {2666-979X},
  journal      = {Cell Genomics},
  publisher    = {Elsevier},
  title        = {{Joint modeling of whole-genome sequencing data for human height via approximate message passing}},
  doi          = {10.1016/j.xgen.2026.101162},
  year         = {2026},
}

@article{21766,
  abstract     = {We provide a new characterisation of the decades old open problem of extending bilipschitz mappings given on a Euclidean separated net. In particular, this allows for the complete positive solution of the open problem in dimension two. Along the way, we develop a set of tools for bilipschitz extensions of mappings between subsets of Euclidean spaces.},
  author       = {Dymond, Michael and Kaluza, Vojtech},
  issn         = {2737-114X},
  journal      = {Annales Fennici Mathematici},
  keywords     = {Lipschitz, bilipschitz, extension, separated net.},
  number       = {1},
  pages        = {237--260},
  publisher    = {Finnish Mathematical Society},
  title        = {{Extending bilipschitz mappings between separated nets}},
  doi          = {10.54330/afm.181562},
  volume       = {51},
  year         = {2026},
}

@article{21006,
  abstract     = {Modern experimental methods in programmable self-assembly make it possible to precisely design particle concentrations, shapes and interactions. However, more physical insight is needed before we can take full advantage of this vast design space to assemble nanostructures with complex form and function. Here we show how a substantial part of this design space can be quickly and comprehensively understood by identifying a class of thermodynamic constraints that act on it. These thermodynamic constraints form a high-dimensional convex polyhedron that determines which nanostructures can be assembled at high equilibrium yield and reveals limitations that govern the coexistence of structures. We validate our predictions through detailed, quantitative assembly experiments of nanoscale particles synthesized using DNA origami. Our results uncover physical relationships underpinning many-component programmable self-assembly in equilibrium and form the basis for robust inverse design, applicable to various systems from biological protein complexes to synthetic nanomachines.},
  author       = {Hübl, Maximilian and Videbæk, Thomas E. and Hayakawa, Daichi and Rogers, W. Benjamin and Goodrich, Carl Peter},
  issn         = {1745-2481},
  journal      = {Nature Physics},
  publisher    = {Springer Nature},
  title        = {{A polyhedral structure controls programmable self-assembly}},
  doi          = {10.1038/s41567-025-03120-3},
  year         = {2026},
}

@article{21760,
  abstract     = {3I/ATLAS is the third interstellar object discovered to date, following 1I/‘Oumuamua and 2I/Borisov. Its unusually high excess velocity and active cometary nature make it a key probe of the Galactic population of icy planetesimals. Understanding its origin requires its past trajectory through the Galaxy to be traced and the possible role of stellar encounters to be assessed, both as a potential origin and a perturber to its orbit. We integrated the orbit of 3I/ATLAS backward in time for 10 Myr, together with a sample of Gaia DR3 stars with high-quality astrometry and radial velocities, to identify close passages within 2 pc. We identify 93 nominal encounters, 62 of which are significant at the 2σ level. However, none of these encounters produced any meaningful perturbation. The strongest perturber Gaia DR3 6863591389529611264 at 0.30 pc and with a relative velocity of 35 km s−1, imparted only a velocity change of ∣Δv∣  ≃  5  ×  10−4 km s−1 to the orbit of 3I/ATLAS. Our results indicate that no stellar flybys within the past 10 Myr and 500 pc contained in Gaia DR3 can account for the present trajectory of 3I/ATLAS or be associated with its origin. We further show that 3I/ATLAS is kinematically consistent with a thin-disk population, despite its large peculiar velocity.},
  author       = {Pérez-Couto, X. and Torres Rodriguez, Santiago and Villaver, E. and Mustill, A. J. and Manteiga, M.},
  issn         = {1538-4357},
  journal      = {The Astrophysical Journal},
  number       = {2},
  publisher    = {IOP Publishing},
  title        = {{3I/ATLAS: In search of the witnesses to its voyage}},
  doi          = {10.3847/1538-4357/ae56ff},
  volume       = {1001},
  year         = {2026},
}

@article{21761,
  abstract     = {Neural tube closure is a critical morphogenetic process in vertebrate development, and failure to close cranial regions such as the hindbrain neuropore (HNP) leads to severe congenital malformations. While mechanical forces such as actomyosin purse-string contraction and directional cell crawling have been implicated in driving HNP closure, how these forces organize local cell shape and motion to produce large-scale tissue remodeling remains poorly understood. Using live and fixed imaging of mouse embryos combined with cell-based biophysical modeling, we show that these force-generating mechanisms are insufficient to explain the reproducible patterns of cell elongation and nematic alignment observed at the HNP border. Instead, we show that local anisotropic stress and cytoskeletal organization are required to generate these patterns and promote midline cell motion. Our model captures key features of cell shape dynamics and emergent nematic order, which we confirm experimentally, including the alignment of actin fibers with cell shape and enhanced midline cell speed. Comparative analysis with chick embryos, which lack supracellular purse strings, supports a conserved link between tension generation and cellular patterning. These findings establish a physical framework connecting force generation, cell shape anisotropy, and tissue morphodynamics during epithelial gap closure.},
  author       = {Perez Verdugo, Fernanda L and Maniou, Eirini and Galea, Gabriel L. and Banerjee, Shiladitya},
  issn         = {1879-0445},
  journal      = {Current Biology},
  number       = {8},
  pages        = {1903--1917.e5},
  publisher    = {Elsevier},
  title        = {{Mechanosensitive feedback organizes cell shape and motion during hindbrain neuropore morphogenesis}},
  doi          = {10.1016/j.cub.2026.02.068},
  volume       = {36},
  year         = {2026},
}

@article{21762,
  abstract     = {Bacteria, like eukaryotes, use conserved cytoskeletal systems for intracellular organization. The plasmid-encoded ParMRC system forms actin-like filaments that segregate low–copy number plasmids. In multicellular cyanobacteria such as Anabaena sp., we found that a chromosomally encoded ParMR system has evolved into a cytoskeletal system named CorMR with a function in cell shape control rather than DNA segregation. Live-cell imaging, in vitro reconstitution, and cryo–electron microscopy revealed that CorM formed dynamically unstable, antiparallel double-stranded filaments that were recruited to the membrane by CorR through an amphipathic helix conserved in multicellular cyanobacteria. CorMR filaments were regulated by MinC, which excluded them from the poles and division plane. Comparative genomics indicated that the repurposing of ParMR and Min systems coevolved with cyanobacterial multicellularity, highlighting the evolutionary plasticity of cytoskeletal systems in bacteria.},
  author       = {Springstein, Benjamin L and Javoor, Manjunath and Megrian, Daniela and Hajdu, Roman and Hanke, Dustin M. and Zens, Bettina and Weiss, Gregor L. and Schur, Florian Km and Loose, Martin},
  issn         = {1095-9203},
  journal      = {Science},
  number       = {6795},
  publisher    = {AAAS},
  title        = {{Repurposing of a DNA segregation machinery into a cytoskeletal system controlling cell shape}},
  doi          = {10.1126/science.aea6343},
  volume       = {392},
  year         = {2026},
}

@article{21755,
  abstract     = {Tropical shallow clouds are a major source of uncertainty in Earth's climate sensitivity, especially through their spatial arrangement, which global climate models do not represent. Efforts to understand their organization have partly relied on classifying observed scenes, identifying four patterns as archetypal regimes. Here we analyze geostationary satellite imagery of the western tropical Atlantic using the L‐function, a tool based on point pattern theory that quantifies cloud organization across spatial scales. Classical examples of the four patterns show distinct L‐function fingerprints, revealing their characteristic clustering and regularity scales and aiding physical interpretation. Yet, when evaluating many scenes at fixed spatial scales, the L‐function distribution lacks the distinct modes expected from discrete regimes. This is corroborated by analyses of other organization indices employing diverse approaches, from inter‐cloud nearest‐neighbor distances to fractal analysis. Implications for the parameterization of mesoscale cloud organization in climate models are discussed.},
  author       = {Biagioli, Giovanni and Mandorli, Giulio and Freischem, Lilli Johanna and Casallas Garcia, Alejandro and Tompkins, Adrian Mark},
  issn         = {1944-8007},
  journal      = {Geophysical Research Letters},
  number       = {8},
  publisher    = {Wiley},
  title        = {{Spatial patterns of shallow clouds: Challenging the concept of defined regimes}},
  doi          = {10.1029/2025gl119921},
  volume       = {53},
  year         = {2026},
}

@article{21752,
  abstract     = {Epithelial tissues function as multicellular communities that preserve tissue integrity while adapting to diverse environmental stresses by altering cell behaviors. A striking manifestation of such adaptability is cell plasticity, the ability of differentiated cells to revert to stem-like states or adopt alternative fates. Once considered rare and confined to highly regenerative species, cell plasticity is now recognized across the metazoan tree. In early-branching animals such as sponges and cnidarians, transdifferentiation and dedifferentiation are integral to life-cycle transitions and regeneration, whereas in more complex organisms, these processes typically emerge under stress, including stem cell loss or environmental perturbations. Here, we examine epithelial cell plasticity through evolutionary, cellular, and molecular perspectives. Focusing on the intestinal epithelium, we explore findings from mammalian and Drosophila models showing that progenitors and even terminally differentiated cells can dedifferentiate in response to external stimuli that disrupt homeostasis, such as pathogen infection and nutrient fluctuations. We further discuss conserved mechanisms involving intercellular signaling (e.g., Notch, EGFR, and JAK-STAT) and chromatin states primed for reprogramming, modulated by metabolic cues. Together, these insights position cell plasticity as an ancient environmental adaptation strategy, shaped by conserved molecular toolkits and refined by species- and cell lineage-specific innovations.},
  author       = {Nagai, Hiroki and Nakajima, Yu Ichiro},
  issn         = {1096-3634},
  journal      = {Seminars in Cell and Developmental Biology},
  publisher    = {Elsevier},
  title        = {{Epithelial cell plasticity in metazoans: Evolutionary insights into roles and mechanisms}},
  doi          = {10.1016/j.semcdb.2026.103670},
  volume       = {179-180},
  year         = {2026},
}

