@article{14256, abstract = {Context. Space asteroseismology is revolutionizing our knowledge of the internal structure and dynamics of stars. A breakthrough is ongoing with the recent discoveries of signatures of strong magnetic fields in the core of red giant stars. The key signature for such a detection is the asymmetry these fields induce in the frequency splittings of observed dipolar mixed gravito-acoustic modes. Aims. We investigate the ability of the observed asymmetries of the frequency splittings of dipolar mixed modes to constrain the geometrical properties of deep magnetic fields. Methods. We used the powerful analytical Racah-Wigner algebra used in quantum mechanics to characterize the geometrical couplings of dipolar mixed oscillation modes with various realistically plausible topologies of fossil magnetic fields. We also computed the induced perturbation of their frequencies. Results. First, in the case of an oblique magnetic dipole, we provide the exact analytical expression of the asymmetry as a function of the angle between the rotation and magnetic axes. Its value provides a direct measure of this angle. Second, considering a combination of axisymmetric dipolar and quadrupolar fields, we show how the asymmetry is blind to the unraveling of the relative strength and sign of each component. Finally, in the case of a given multipole, we show that a negative asymmetry is a signature of non-axisymmetric topologies. Conclusions. Asymmetries of dipolar mixed modes provide a key bit of information on the geometrical topology of deep fossil magnetic fields, but this is insufficient on its own. Asteroseismic constraints should therefore be combined with spectropolarimetric observations and numerical simulations, which aim to predict the more probable stable large-scale geometries.}, author = {Mathis, S. and Bugnet, Lisa Annabelle}, issn = {1432-0746}, journal = {Astronomy & Astrophysics}, publisher = {EDP Sciences}, title = {{Asymmetries of frequency splittings of dipolar mixed modes: A window on the topology of deep magnetic fields}}, doi = {10.1051/0004-6361/202346832}, volume = {676}, year = {2023}, } @phdthesis{14547, abstract = {Superconductor-semiconductor heterostructures currently capture a significant amount of research interest and they serve as the physical platform in many proposals towards topological quantum computation. Despite being under extensive investigations, historically using transport techniques, the basic properties of the interface between the superconductor and the semiconductor remain to be understood. In this thesis, two separate studies on the Al-InAs heterostructures are reported with the first focusing on the physics of the material motivated by the emergence of a new phase, the Bogoliubov-Fermi surface. The second focuses on a technological application, a gate-tunable Josephson parametric amplifier. In the first study, we investigate the hypothesized unconventional nature of the induced superconductivity at the interface between the Al thin film and the InAs quantum well. We embed a two-dimensional Al-InAs hybrid system in a resonant microwave circuit allowing measurements of change in inductance. The behaviour of the resonance in a range of temperature and in-plane magnetic field has been studied and compared with the theory of conventional s-wave superconductor and a two-component theory that includes both contribution of the $s$-wave pairing in Al and the intraband $p \pm ip$ pairing in InAs. Measuring the temperature dependence of resonant frequency, no discrepancy is found between data and the conventional theory. We observe the breakdown of superconductivity due to an applied magnetic field which contradicts the conventional theory. In contrast, the data can be captured quantitatively by fitting to a two-component model. We find the evidence of the intraband $p \pm ip$ pairing in the InAs and the emergence of the Bogoliubov-Fermi surfaces due to magnetic field with the characteristic value $B^* = 0.33~\mathrm{T}$. From the fits, the sheet resistance of Al, the carrier density and mobility in InAs are determined. By systematically studying the anisotropy of the circuit response, we find weak anisotropy for $B < B^*$ and increasingly strong anisotropy for $B > B^*$ resulting in a pronounced two-lobe structure in polar plot of frequency versus field angle. Strong resemblance between the field dependence of dissipation and superfluid density hints at a hidden signature of the Bogoliubov-Fermi surface that is burried in the dissipation data. In the second study, we realize a parametric amplifier with a Josephson field effect transistor as the active element. The device's modest construction consists of a gated SNS weak link embedded at the center of a coplanar waveguide resonator. By applying a gate voltage, the resonant frequency is field-effect tunable over a range of 2 GHz. Modelling the JoFET minimally as a parallel RL circuit, the dissipation introduced by the JoFET can be quantitatively related to the gate voltage. We observed gate-tunable Kerr nonlinearity qualitatively in line with expectation. The JoFET amplifier has 20 dB of gain, 4 MHz of instantaneous bandwidth, and a 1dB compression point of -125.5 dBm when operated at a fixed resonant frequency. In general, the signal-to-noise ratio is improved by 5-7 dB when the JoFET amplifier is activated compared. The noise of the measurement chain and insertion loss of relevant circuit elements are calibrated to determine the expected and the real noise performance of the JoFET amplifier. As a quantification of the noise performance, the measured total input-referred noise of the JoFET amplifier is in good agreement with the estimated expectation which takes device loss into account. We found that the noise performance of the device reported in this document approaches one photon of total input-referred added noise which is the quantum limit imposed in nondegenerate parametric amplifier.}, author = {Phan, Duc T}, issn = {2663-337X}, keywords = {superconductor-semiconductor, superconductivity, Al, InAs, p-wave, superconductivity, JPA, microwave}, pages = {80}, publisher = {Institute of Science and Technology Austria}, title = {{Resonant microwave spectroscopy of Al-InAs}}, doi = {10.15479/14547}, year = {2023}, } @article{14749, abstract = {We unveil a powerful method for the stabilization of laser injection locking based on sensing variations in the output beam ellipticity of an optically seeded laser. The effect arises due to an interference between the seeding beam and the injected laser output. We demonstrate the method for a commercial semiconductor laser without the need for any internal changes to the readily operational injection locked laser system that was used. The method can also be used to increase the mode-hop free tuning range of lasers, and has the potential to fill a void in the low-noise laser industry.}, author = {Mishra, Umang and Li, Vyacheslav and Wald, Sebastian and Agafonova, Sofya and Diorico, Fritz R and Hosten, Onur}, issn = {1539-4794}, journal = {Optics Letters}, keywords = {Atomic and Molecular Physics, and Optics}, number = {15}, pages = {3973--3976}, publisher = {Optica Publishing Group}, title = {{Monitoring and active stabilization of laser injection locking using beam ellipticity}}, doi = {10.1364/ol.495553}, volume = {48}, year = {2023}, } @article{13233, abstract = {We study the impact of finite-range physics on the zero-range-model analysis of three-body recombination in ultracold atoms. We find that temperature dependence of the zero-range parameters can vary from one set of measurements to another as it may be driven by the distribution of error bars in the experiment, and not by the underlying three-body physics. To study finite-temperature effects in three-body recombination beyond the zero-range physics, we introduce and examine a finite-range model based upon a hyperspherical formalism. The systematic error discussed in this Letter may provide a significant contribution to the error bars of measured three-body parameters.}, author = {Agafonova, Sofya and Lemeshko, Mikhail and Volosniev, Artem}, issn = {2469-9934}, journal = {Physical Review A}, number = {6}, publisher = {American Physical Society}, title = {{Finite-range bias in fitting three-body loss to the zero-range model}}, doi = {10.1103/PhysRevA.107.L061304}, volume = {107}, year = {2023}, } @article{13264, abstract = {We build a parametric amplifier with a Josephson field-effect transistor (JoFET) as the active element. The resonant frequency of the device is field-effect tunable over a range of 2 GHz. The JoFET amplifier has 20 dB of gain, 4 MHz of instantaneous bandwidth, and a 1-dB compression point of -125.5 dBm when operated at a fixed resonance frequency. }, author = {Phan, Duc T and Falthansl-Scheinecker, Paul and Mishra, Umang and Strickland, W. M. and Langone, D. and Shabani, J. and Higginbotham, Andrew P}, issn = {2331-7019}, journal = {Physical Review Applied}, number = {6}, publisher = {American Physical Society}, title = {{Gate-tunable superconductor-semiconductor parametric amplifier}}, doi = {10.1103/PhysRevApplied.19.064032}, volume = {19}, year = {2023}, } @article{22162, abstract = {Given a bipartite graph G, the graphical matrix space SG consists of matrices whose non-zero entries can only be at those positions corresponding to edges in G. Tutte (J. London Math. Soc., 1947), Edmonds (J. Res. Nat. Bur. Standards Sect. B, 1967) and Lov´asz (FCT, 1979) observed connections between perfect matchings in G and full-rank matrices in SG. Dieudonn´e (Arch. Math., 1948) proved a tight upper bound on the dimensions of those matrix spaces containing only singular matrices. The starting point of this paper is a simultaneous generalization of these two classical results: we show that the largest dimension over subspaces of SG containing only singular matrices is equal to the maximum size over subgraphs of G without perfect matchings, based on Meshulam’s proof of Dieudonn´e’s result (Quart. J. Math., 1985). Starting from this result, we go on to establish more connections between properties of graphs and matrix spaces. For example, we establish connections between acyclicity and nilpotency, between strong connectivity and irreducibility, and between isomorphism and conjugacy/congruence. For each connection, we study three types of correspondences, namely the basic correspondence, the inherited correspondence (for subgraphs and subspaces), and the induced correspondence (for induced subgraphs and restrictions). Some correspondences lead to intriguing generalizations of classical results, such as Dieudonn´e’s result mentioned above, and a celebrated theorem of Gerstenhaber regarding the largest dimension of nil matrix spaces (Amer. J. Math., 1958). Finally, we show some implications of our results to quantum information and present open problems in computational complexity motivated by these results.}, author = {Li, Yinan and Qiao, Youming and Wigderson, Avi and Wigderson, Yuval and Zhang, Chuanqi}, issn = {1565-8511}, journal = {Israel Journal of Mathematics}, number = {2}, pages = {513--580}, publisher = {Springer Nature}, title = {{Connections between graphs and matrix spaces}}, doi = {10.1007/s11856-023-2515-7}, volume = {256}, year = {2023}, } @article{22159, abstract = {The size Ramsey number of a graph H is defined as the minimum number of edges in a graph G such that there is a monochromatic copy of H in every two-coloring of E(G). The size Ramsey number was introduced by Erdős, Faudree, Rousseau, and Schelp in 1978 and they ended their foundational paper by asking whether one can determine up to a constant factor the size Ramsey numbers of three families of graphs: complete bipartite graphs, book graphs (obtained by adding many common neighbors to the vertices of a clique), and starburst graphs (obtained by adding many pendant edges to each vertex of a clique). In this paper, we completely resolve the latter two questions and make substantial progress on the first by determining the size Ramsey number of Ks,t up to a constant factor for all t=Ω(s log s).}, author = {Conlon, David and Fox, Jacob and Wigderson, Yuval}, issn = {1439-6912}, journal = {Combinatorica}, number = {4}, pages = {743--768}, publisher = {Springer Nature}, title = {{Three early problems on size Ramsey numbers}}, doi = {10.1007/s00493-023-00034-7}, volume = {43}, year = {2023}, } @phdthesis{14641, abstract = {Mutation rates represent the net result of complex interactions among various cellular processes and can dramatically influence the evolutionary fate of microbial populations. However, many popular techniques used to study mutations are subject to the confounding effects of heredity and the subtleties of adaptation to selection, all of which make it difficult to observe any dynamic responses of mutation rates to fitness challenges. Furthermore, in spite of the ubiquity of quorum sensing systems across the bacterial domain and relevance for many physiological behaviors, the effects of such mechanisms on mutation rate and adaptation remain poorly understood. In the following work, I present the development of a microfluidic droplet-based method to measure single base-pair mutation rates in growing populations of the bacterium Escherichia coli. I use this method to observe a stress-induced increase in mutation rate that is mediated by luxS, a highly conserved bacterial quorum sensing component. I also show that the aforementioned increase in mutation rate, and its associated control by luxS, corresponds to a higher degree of adaptability under competitive environments.}, author = {Hennessey-Wesen, Mike}, issn = {2663-337X}, keywords = {microfluidics, miceobiology, mutations, quorum sensing}, pages = {104}, publisher = {Institute of Science and Technology Austria}, title = {{Adaptive mutation in E. coli modulated by luxS}}, doi = {10.15479/at:ista:14641}, year = {2023}, } @article{14666, abstract = {So-called spontaneous activity is a central hallmark of most nervous systems. Such non-causal firing is contrary to the tenet of spikes as a means of communication, and its purpose remains unclear. We propose that self-initiated firing can serve as a release valve to protect neurons from the toxic conditions arising in mitochondria from lower-than-baseline energy consumption. To demonstrate the viability of our hypothesis, we built a set of models that incorporate recent experimental results indicating homeostatic control of metabolic products—Adenosine triphosphate (ATP), adenosine diphosphate (ADP), and reactive oxygen species (ROS)—by changes in firing. We explore the relationship of metabolic cost of spiking with its effect on the temporal patterning of spikes and reproduce experimentally observed changes in intrinsic firing in the fruitfly dorsal fan-shaped body neuron in a model with ROS-modulated potassium channels. We also show that metabolic spiking homeostasis can produce indefinitely sustained avalanche dynamics in cortical circuits. Our theory can account for key features of neuronal activity observed in many studies ranging from ion channel function all the way to resting state dynamics. We finish with a set of experimental predictions that would confirm an integrated, crucial role for metabolically regulated spiking and firmly link metabolic homeostasis and neuronal function.}, author = {Chintaluri, Chaitanya and Vogels, Tim P}, issn = {1091-6490}, journal = {Proceedings of the National Academy of Sciences of the United States of America}, number = {48}, publisher = {National Academy of Sciences}, title = {{Metabolically regulated spiking could serve neuronal energy homeostasis and protect from reactive oxygen species}}, doi = {10.1073/pnas.2306525120}, volume = {120}, year = {2023}, } @article{22164, abstract = {The clique removal lemma says that for every ≥r 3 andε > 0, there exists some δ > 0 so that every n‐vertex graph G with fewer than δnr copies of K r can be made K r ‐free by removing at most εn2 edges. The dependence of δ on ε in this result is notoriously difficult to determine: it is known that δ−1 must be at least super‐polynomial in ε−1, and that it is at most of tower type in εlog −1. We prove that if one imposes an appropriate minimum degree condition on G, then one can actually take δ to be a linear function of ε in the clique removal lemma. Moreover, we determine the threshold for such a minimum degree requirement, showing that above this threshold we have linear bounds, whereas below the threshold the bounds are once again super‐polynomial, as in the unrestricted removal lemma. We also investigate this question for other graphs besides cliques, and prove some general results about how minimum degree conditions affect the bounds in the graph removal lemma.}, author = {Fox, Jacob and Wigderson, Yuval}, issn = {1097-0118}, journal = {Journal of Graph Theory}, keywords = {chromatic threshold, graph removal lemma, homomorphism threshold, minimum degree conditions}, number = {4}, pages = {648--665}, publisher = {Wiley}, title = {{Minimum degree and the graph removal lemma}}, doi = {10.1002/jgt.22891}, volume = {102}, year = {2023}, } @article{22165, abstract = {The book graph 𝐵(𝑘) 𝑛 consists of 𝑛 copies of 𝐾𝑘+1 joined along a common 𝐾𝑘. In the prequel to this paper, we studied the diagonal Ramsey number 𝑟⁡(𝐵(𝑘) 𝑛,𝐵(𝑘) 𝑛). Here we consider the natural off-diagonal variant 𝑟⁡(𝐵(𝑘) 𝑐⁢𝑛,𝐵(𝑘) 𝑛) for fixed 𝑐 ∈(0,1]. In this more general setting, we show that an interesting dichotomy emerges: for very small 𝑐, a simple 𝑘-partite construction dictates the Ramsey function and all nearly-extremal colourings are close to being 𝑘-partite, while, for 𝑐 bounded away from 0, random colourings of an appropriate density are asymptotically optimal and all nearly-extremal colourings are quasirandom. Our investigations also open up a range of questions about what happens for intermediate values of 𝑐. }, author = {Conlon, David and Fox, Jacob and Wigderson, Yuval}, issn = {1469-2163}, journal = {Combinatorics, Probability and Computing}, keywords = {Ramsey theory, book graphs, Ramsey goodness}, number = {3}, pages = {516--545}, publisher = {Cambridge University Press}, title = {{Off-diagonal book Ramsey numbers}}, doi = {10.1017/s0963548322000360}, volume = {32}, year = {2023}, } @article{22170, abstract = {Extending an earlier conjecture of Erdős, Burr and Rosta conjectured that among all two-colorings of the edges of a complete graph, the uniformly random coloring asymptotically minimizes the number of monochromatic copies of any fixed graph H. This conjecture was disproved independently by Sidorenko and Thomason. The first author later found quantitatively stronger counterexamples, using the Turán coloring, in which one of the two colors spans a balanced complete multipartite graph. We prove that the Turán coloring is extremal for an infinite family of graphs, and that it is the unique extremal coloring. This yields the first determination of the Ramsey multiplicity constant of a graph for which the Burr--Rosta conjecture fails. We also prove an analogous three-color result. In this case, our result is conditional on a certain natural conjecture on the behavior of two-color Ramsey numbers.}, author = {Fox, Jacob and Wigderson, Yuval}, issn = {2517-5599}, journal = {Advances in Combinatorics}, publisher = {Alliance of Diamond Open Access Journals}, title = {{Ramsey multiplicity and the Turán coloring}}, doi = {10.19086/aic.2023.2}, year = {2023}, } @article{22176, abstract = {The Ramsey number r(G,H) is the minimum N such that every graph on N vertices contains G as a subgraph or its complement contains H as a subgraph. For integers n≥k≥1, the k-book Bk,n is the graph on n vertices consisting of a copy of Kk, called the spine, as well as n−k additional vertices each adjacent to every vertex of the spine and non-adjacent to each other. A connected graph H on n vertices is called p-good if r(Kp,H)=(p−1)(n−1)+1. Nikiforov and Rousseau proved that if n is sufficiently large in terms of p and k, then Bk,n is p-good. Their proof uses Szemerédi's regularity lemma and gives a tower-type bound on n. We give a short new proof that avoids using the regularity method and shows that every Bk,n with n≥2k10p is p-good. Using Szemerédi's regularity lemma, Nikiforov and Rousseau also proved much more general goodness-type results, proving a tight bound on r(G,H) for several families of sparse graphs G and H as long as |V(G)|<δ|V(H)| for a small constant δ>0. Using our techniques, we prove a new result of this type, showing that r(G,H)=(p−1)(n−1)+1 when H=Bk,n and G is a complete p-partite graph whose first p−1 parts have constant size and whose last part has size δn, for some small constant δ>0. Again, our proof does not use the regularity method, and thus yields double-exponential bounds on δ. }, author = {Fox, Jacob and He, Xiaoyu and Wigderson, Yuval}, issn = {2517-5599}, journal = {Advances in Combinatorics}, publisher = {Alliance of Diamond Open Access Journals}, title = {{Ramsey goodness of books revisited}}, doi = {10.19086/aic.2023.4}, year = {2023}, } @article{22192, abstract = {In 1976, Gallagher showed that the Hardy–Littlewood conjectures on prime k-tuples imply that the distribution of primes in log-size intervals is Poissonian. He did so by computing average values of the singular series constants over different sets of a fixed size k contained in an interval [1,h] as h → ∞, and then using this average to compute moments of the distribution of primes. In this paper, we study averages where k is relatively large with respect to h. We then apply these averages to the tail of the distribution. For example, we show, assuming appropriate Hardy–Littlewood conjectures and in certain ranges of the parameters, the number of intervals [n,n + λlogx] with n ≤ x containing at least k primes is ≪ x exp(−k/(λe)).}, author = {Kuperberg, Vivian Zieve}, issn = {1464-3847}, journal = {The Quarterly Journal of Mathematics}, number = {4}, pages = {1457--1479}, publisher = {Oxford University Press}, title = {{Sums of singular series with large sets and the tail of the distribution of primes}}, doi = {10.1093/qmath/haad030}, volume = {74}, year = {2023}, } @article{22212, abstract = {Anisotropic colloidal particles exhibit complex dynamics which play a crucial role in their functionality, transport, and phase behavior. In this Letter, we investigate the two-dimensional diffusion of smoothly curved colloidal rods—also known as colloidal bananas—as a function of their opening angle α. We measure the translational and rotational diffusion coefficients of the particles with opening angles ranging from 0◦ (straight rods) to nearly 360◦(closed rings). In particular, we find that the anisotropic diffusion of the particles varies nonmonotonically with their opening angle and that the axis of fastest diffusion switches from the long to the short axis of the particles when α> 180◦. We also find that the rotational diffusion coefficient of nearly closed rings is approximately an order of magnitude higher than that of straight rods of the same length. Finally, we show that the experimental results are consistent with slender body theory, indicating that the dynamical behavior of the particles arises primarily from their local drag anisotropy. These results highlight the impact of curvature on the Brownian motion of elongated colloidal particles, which must be taken into account when seeking to understand the behavior of curved colloidal particles.}, author = {Ulbrich, Justin-Aurel and Fernández-Rico, Carla and Rost, Brian and Vialetto, Jacopo and Isa, Lucio and Urbach, Jeffrey S. and Dullens, Roel P. A.}, issn = {2470-0053}, journal = {Physical Review E}, number = {4}, publisher = {American Physical Society}, title = {{Effect of curvature on the diffusion of colloidal bananas}}, doi = {10.1103/physreve.107.l042602}, volume = {107}, year = {2023}, } @article{12675, abstract = {Aromatic side chains are important reporters of the plasticity of proteins, and often form important contacts in protein--protein interactions. By studying a pair of structurally homologous cross-β amyloid fibrils, HET-s and HELLF, with a specific isotope-labeling approach and magic-angle-spinning (MAS) NMR, we have characterized the dynamic behavior of Phe and Tyr aromatic rings to show that the hydrophobic amyloid core is rigid, without any sign of "breathing motions" over hundreds of milliseconds at least. Aromatic residues exposed at the fibril surface have a rigid ring axis but undergo ring flips, on a variety of time scales from ns to µs. Our approach provides direct insight into hydrophobic-core motions, enabling a better evaluation of the conformational heterogeneity generated from a NMR structural ensemble of such amyloid cross-β architecture.}, author = {Becker, Lea Marie and Berbon, Mélanie and Vallet, Alicia and Grelard, Axelle and Morvan, Estelle and Bardiaux, Benjamin and Lichtenecker, Roman and Ernst, Matthias and Loquet, Antoine and Schanda, Paul}, issn = {1521-3773}, journal = {Angewandte Chemie International Edition}, keywords = {General Chemistry, Catalysis}, number = {19}, publisher = {Wiley}, title = {{The rigid core and flexible surface of amyloid fibrils probed by Magic‐Angle Spinning NMR of aromatic residues}}, doi = {10.1002/anie.202219314}, volume = {62}, year = {2023}, } @article{12114, abstract = {Probing the dynamics of aromatic side chains provides important insights into the behavior of a protein because flips of aromatic rings in a protein’s hydrophobic core report on breathing motion involving a large part of the protein. Inherently invisible to crystallography, aromatic motions have been primarily studied by solution NMR. The question how packing of proteins in crystals affects ring flips has, thus, remained largely unexplored. Here we apply magic-angle spinning NMR, advanced phenylalanine 1H-13C/2H isotope labeling and MD simulation to a protein in three different crystal packing environments to shed light onto possible impact of packing on ring flips. The flips of the two Phe residues in ubiquitin, both surface exposed, appear remarkably conserved in the different crystal forms, even though the intermolecular packing is quite different: Phe4 flips on a ca. 10–20 ns time scale, and Phe45 are broadened in all crystals, presumably due to µs motion. Our findings suggest that intramolecular influences are more important for ring flips than intermolecular (packing) effects.}, author = {Gauto, Diego F. and Lebedenko, Olga O. and Becker, Lea Marie and Ayala, Isabel and Lichtenecker, Roman and Skrynnikov, Nikolai R. and Schanda, Paul}, issn = {2590-1524}, journal = {Journal of Structural Biology: X}, keywords = {Structural Biology}, publisher = {Elsevier}, title = {{Aromatic ring flips in differently packed ubiquitin protein crystals from MAS NMR and MD}}, doi = {10.1016/j.yjsbx.2022.100079}, volume = {7}, year = {2023}, } @article{13968, abstract = {The use of multimodal readout mechanisms next to label-free real-time monitoring of biomolecular interactions can provide valuable insight into surface-based reaction mechanisms. To this end, the combination of an electrolyte-gated field-effect transistor (EG-FET) with a fiber optic-coupled surface plasmon resonance (FO-SPR) probe serving as gate electrode has been investigated to deconvolute surface mass and charge density variations associated to surface reactions. However, applying an electrochemical potential on such gold-coated FO-SPR gate electrodes can induce gradual morphological changes of the thin gold film, leading to an irreversible blue-shift of the SPR wavelength and a substantial signal drift. We show that mild annealing leads to optical and electronic signal stabilization (20-fold lower signal drift than as-sputtered fiber optic gates) and improved overall analytical performance characteristics. The thermal treatment prevents morphological changes of the thin gold-film occurring during operation, hence providing reliable and stable data immediately upon gate voltage application. Thus, the readout output of both transducing principles, the optical FO-SPR and electronic EG-FET, stays constant throughout the whole sensing time-window and the long-term effect of thermal treatment is also improved, providing stable signals even after 1 year of storage. Annealing should therefore be considered a necessary modification for applying fiber optic gate electrodes in real-time multimodal investigations of surface reactions at the solid-liquid interface.}, author = {Hasler, Roger and Steger-Polt, Marie Helene and Reiner-Rozman, Ciril and Fossati, Stefan and Lee, Seungho and Aspermair, Patrik and Kleber, Christoph and Ibáñez, Maria and Dostalek, Jakub and Knoll, Wolfgang}, issn = {2296-424X}, journal = {Frontiers in Physics}, publisher = {Frontiers}, title = {{Optical and electronic signal stabilization of plasmonic fiber optic gate electrodes: Towards improved real-time dual-mode biosensing}}, doi = {10.3389/fphy.2023.1202132}, volume = {11}, year = {2023}, } @misc{19308, abstract = {This Dataset contains the raw data from the following publication: "Optical and electronic signal stabilization of plasmonic fiber optic gate electrodes: towards improved real-time dual-mode biosensing" (DOI 10.3389/fphy.2023.1202132)}, author = {Hasler, Roger and Polt, Marie-Helene and Reiner-Rozman, Ciril and Fossati, Stefan and Lee, Seungho and Aspermair, Patrik and Kleber, Christoph and Ibáñez, Maria and Dostalek, Jakub and Knoll, Wolfgang}, publisher = {Zenodo}, title = {{Optical and electronic signal stabilization of plasmonic fiber optic gate electrodes: Towards improved real-time dual-mode biosensing}}, doi = {10.5281/ZENODO.7716920}, year = {2023}, } @inproceedings{22373, abstract = {Data dissemination is a fundamental task in distributed computing. This paper studies broadcast problems in various innovative models where the communication network connecting n processes is dynamic (e.g., due to mobility or failures) and controlled by an adversary. In the first model, the processes transitively communicate their ids in synchronous rounds along a rooted tree given in each round by the adversary whose goal is to maximize the number of rounds until at least one id is known by all processes. Previous research has shown a ⌈(3n-1)/2⌉-2 lower bound and an O(nlog log n) upper bound. We show the first linear upper bound for this problem, namely ⌈(1+√2) n-1⌉ ≈ 2.4n. We extend these results to the setting where the adversary gives in each round k-disjoint forests and their goal is to maximize the number of rounds until there is a set of k ids such that each process knows of at least one of them. We give a ⌈3(n-k)/2⌉-1 lower bound and a (π²+6)/6 n+1 ≈ 2.6n upper bound for this problem. Finally, we study the setting where the adversary gives in each round a directed graph with k roots and their goal is to maximize the number of rounds until there exist k ids that are known by all processes. We give a ⌈3(n-3k)/2⌉+2 lower bound and a ⌈(1+√2)n⌉+k-1 ≈ 2.4n+k upper bound for this problem. For the two latter problems no upper or lower bounds were previously known.}, author = {El-Hayek, Antoine and Henzinger, Monika H and Schmid, Stefan}, booktitle = {14th Innovations in Theoretical Computer Science Conference}, editor = {Tauman Kalai, Yael}, isbn = {9783959772631}, issn = {1868-8969}, keywords = {broadcast, cover, k-broadcast, dynamic radius, dynamic graphs, oblivious message adversary, time complexity, Theory of computation → Distributed algorithms, Networks → Network algorithms}, location = {Cambridge, Massachusetts, USA}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum für Informatik}, title = {{Asymptotically tight bounds on the time complexity of broadcast and its variants in dynamic networks}}, doi = {10.4230/LIPICS.ITCS.2023.47}, volume = {251}, year = {2023}, }