@article{6793, abstract = {The Regge symmetry is a set of remarkable relations between two tetrahedra whose edge lengths are related in a simple fashion. It was first discovered as a consequence of an asymptotic formula in mathematical physics. Here, we give a simple geometric proof of Regge symmetries in Euclidean, spherical, and hyperbolic geometry.}, author = {Akopyan, Arseniy and Izmestiev, Ivan}, issn = {1469-2120}, journal = {Bulletin of the London Mathematical Society}, number = {5}, pages = {765--775}, publisher = {London Mathematical Society}, title = {{The Regge symmetry, confocal conics, and the Schläfli formula}}, doi = {10.1112/blms.12276}, volume = {51}, year = {2019}, } @article{6795, abstract = {The green‐beard effect is one proposed mechanism predicted to underpin the evolu‐tion of altruistic behavior. It relies on the recognition and the selective help of altruists to each other in order to promote and sustain altruistic behavior. However, this mechanism has often been dismissed as unlikely or uncommon, as it is assumed that both the signaling trait and altruistic trait need to be encoded by the same gene or through tightly linked genes. Here, we use models of indirect genetic effects (IGEs) to find the minimum correlation between the signaling and altruistic trait required for the evolution of the latter. We show that this correlation threshold depends on the strength of the interaction (influence of the green beard on the expression of the altruistic trait), as well as the costs and benefits of the altruistic behavior. We further show that this correlation does not necessarily have to be high and support our analytical results by simulations.}, author = {Trubenova, Barbora and Hager, Reinmar}, issn = {2045-7758}, journal = {Ecology and Evolution}, number = {17}, pages = {9597--9608}, publisher = {Wiley}, title = {{Green beards in the light of indirect genetic effects}}, doi = {10.1002/ece3.5484}, volume = {9}, year = {2019}, } @article{6818, abstract = {Indigoidine is a blue natural pigment, which can be efficiently synthetized in E. coli. In addition to its antioxidant and antimicrobial activities indigoidine due to its stability and deep blue color can find an application as an industrial, environmentally friendly dye. Moreover, similarly to its counterpart regular indigo dye, due to its molecular structure, indigoidine is an organic semiconductor. Fully conjugated aromatic moiety and intermolecular hydrogen bonding of indigoidine result in an unusually narrow bandgap for such a small molecule. This, in its turn, result is tight molecular packing in the solid state and opens a path for a wide range of application in organic and bio-electronics, such as electrochemical and field effect transistors, organic solar cells, light and bio-sensors etc.}, author = {Yumusak, Cigdem and Prochazkova, Anna Jancik and Apaydin, Dogukan H and Seelajaroen, Hathaichanok and Sariciftci, Niyazi Serdar and Weiter, Martin and Krajcovic, Jozef and Qin, Yong and Zhang, Wei and Zhan, Jixun and Kovalenko, Alexander}, issn = {0143-7208}, journal = {Dyes and Pigments}, publisher = {Elsevier}, title = {{Indigoidine - Biosynthesized organic semiconductor}}, doi = {10.1016/j.dyepig.2019.107768}, volume = {171}, year = {2019}, } @article{6819, abstract = {Glyphosate (N-phosphonomethyl glycine) and its commercial herbicide formulations have been shown to exert toxicity via various mechanisms. It has been asserted that glyphosate substitutes for glycine in polypeptide chains leading to protein misfolding and toxicity. However, as no direct evidence exists for glycine to glyphosate substitution in proteins, including in mammalian organisms, we tested this claim by conducting a proteomics analysis of MDA-MB-231 human breast cancer cells grown in the presence of 100 mg/L glyphosate for 6 days. Protein extracts from three treated and three untreated cell cultures were analysed as one TMT-6plex labelled sample, to highlight a specific pattern (+/+/+/−/−/−) of reporter intensities for peptides bearing true glyphosate treatment induced-post translational modifications as well as allowing an investigation of the total proteome.}, author = {Antoniou, Michael N. and Nicolas, Armel and Mesnage, Robin and Biserni, Martina and Rao, Francesco V. and Martin, Cristina Vazquez}, issn = {1756-0500}, journal = {BMC Research Notes}, publisher = {BioMed Central}, title = {{Glyphosate does not substitute for glycine in proteins of actively dividing mammalian cells}}, doi = {10.1186/s13104-019-4534-3}, volume = {12}, year = {2019}, } @article{6821, abstract = {To determine the visual sensitivities of an organism of interest, quantitative reverse transcription–polymerase chain reaction (qRT–PCR) is often used to quantify expression of the light‐sensitive opsins in the retina. While qRT–PCR is an affordable, high‐throughput method for measuring expression, it comes with inherent normalization issues that affect the interpretation of results, especially as opsin expression can vary greatly based on developmental stage, light environment or diurnal cycles. We tested for diurnal cycles of opsin expression over a period of 24 hr at 1‐hr increments and examined how normalization affects a data set with fluctuating expression levels using qRT–PCR and transcriptome data from the retinae of the cichlid Pelmatolapia mariae. We compared five methods of normalizing opsin expression relative to (a) the average of three stably expressed housekeeping genes (Ube2z, EF1‐α and β‐actin), (b) total RNA concentration, (c) GNAT2, (the cone‐specific subunit of transducin), (d) total opsin expression and (e) only opsins expressed in the same cone type. Normalizing by proportion of cone type produced the least variation and would be best for removing time‐of‐day variation. In contrast, normalizing by housekeeping genes produced the highest daily variation in expression and demonstrated that the peak of cone opsin expression was in the late afternoon. A weighted correlation network analysis showed that the expression of different cone opsins follows a very similar daily cycle. With the knowledge of how these normalization methods affect opsin expression data, we make recommendations for designing sampling approaches and quantification methods based upon the scientific question being examined.}, author = {Yourick, Miranda R. and Sandkam, Benjamin A. and Gammerdinger, William J and Escobar-Camacho, Daniel and Nandamuri, Sri Pratima and Clark, Frances E. and Joyce, Brendan and Conte, Matthew A. and Kocher, Thomas D. and Carleton, Karen L.}, issn = {1755-0998}, journal = {Molecular Ecology Resources}, number = {6}, pages = {1447--1460}, publisher = {Wiley}, title = {{Diurnal variation in opsin expression and common housekeeping genes necessitates comprehensive normalization methods for quantitative real-time PCR analyses}}, doi = {10.1111/1755-0998.13062}, volume = {19}, year = {2019}, } @article{6824, abstract = {Platelets are small anucleate cellular fragments that are released by megakaryocytes and safeguard vascular integrity through a process termed ‘haemostasis’. However, platelets have important roles beyond haemostasis as they contribute to the initiation and coordination of intravascular immune responses. They continuously monitor blood vessel integrity and tightly coordinate vascular trafficking and functions of multiple cell types. In this way platelets act as ‘patrolling officers of the vascular highway’ that help to establish effective immune responses to infections and cancer. Here we discuss the distinct biological features of platelets that allow them to shape immune responses to pathogens and tumour cells, highlighting the parallels between these responses.}, author = {Gärtner, Florian R and Massberg, Steffen}, issn = {1474-1741}, journal = {Nature Reviews Immunology}, number = {12}, pages = {747–760}, publisher = {Springer Nature}, title = {{Patrolling the vascular borders: Platelets in immunity to infection and cancer}}, doi = {10.1038/s41577-019-0202-z}, volume = {19}, year = {2019}, } @article{6828, abstract = {In this paper we construct a family of exact functors from the category of Whittaker modules of the simple complex Lie algebra of type to the category of finite-dimensional modules of the graded affine Hecke algebra of type . Using results of Backelin [2] and of Arakawa-Suzuki [1], we prove that these functors map standard modules to standard modules (or zero) and simple modules to simple modules (or zero). Moreover, we show that each simple module of the graded affine Hecke algebra appears as the image of a simple Whittaker module. Since the Whittaker category contains the BGG category as a full subcategory, our results generalize results of Arakawa-Suzuki [1], which in turn generalize Schur-Weyl duality between finite-dimensional representations of and representations of the symmetric group .}, author = {Brown, Adam}, issn = {0021-8693}, journal = {Journal of Algebra}, pages = {261--289}, publisher = {Elsevier}, title = {{Arakawa-Suzuki functors for Whittaker modules}}, doi = {10.1016/j.jalgebra.2019.07.027}, volume = {538}, year = {2019}, } @article{6831, abstract = {* Understanding the mechanisms causing phenotypic differences between females and males has long fascinated evolutionary biologists. An extensive literature exists on animal sexual dimorphism but less information is known about sex differences in plants, particularly the extent of geographical variation in sexual dimorphism and its life‐cycle dynamics. * Here, we investigated patterns of genetically based sexual dimorphism in vegetative and reproductive traits of a wind‐pollinated dioecious plant, Rumex hastatulus, across three life‐cycle stages using open‐pollinated families from 30 populations spanning the geographic range and chromosomal variation (XY and XY1Y2) of the species. * The direction and degree of sexual dimorphism was highly variable among populations and life‐cycle stages. Sex‐specific differences in reproductive function explained a significant amount of temporal change in sexual dimorphism. For several traits, geographical variation in sexual dimorphism was associated with bioclimatic parameters, likely due to the differential responses of the sexes to climate. We found no systematic differences in sexual dimorphism between chromosome races. * Sex‐specific trait differences in dioecious plants largely result from a balance between sexual and natural selection on resource allocation. Our results indicate that abiotic factors associated with geographical context also play a role in modifying sexual dimorphism during the plant life‐cycle.}, author = {Puixeu Sala, Gemma and Pickup, Melinda and Field, David and Barrett, Spencer C.H.}, issn = {1469-8137}, journal = {New Phytologist}, number = {3}, pages = {1108--1120}, publisher = {Wiley}, title = {{Variation in sexual dimorphism in a wind-pollinated plant: The influence of geographical context and life-cycle dynamics}}, doi = {10.1111/nph.16050}, volume = {224}, year = {2019}, } @article{6832, abstract = {Steady-state turnover is a hallmark of epithelial tissues throughout adult life. Intestinal epithelial turnover is marked by continuous cell migration, which is assumed to be driven by mitotic pressure from the crypts. However, the balance of forces in renewal remains ill-defined. Combining biophysical modeling and quantitative three-dimensional tissue imaging with genetic and physical manipulations, we revealed the existence of an actin-related protein 2/3 complex–dependent active migratory force, which explains quantitatively the profiles of cell speed, density, and tissue tension along the villi. Cells migrate collectively with minimal rearrangements while displaying dual—apicobasal and front-back—polarity characterized by actin-rich basal protrusions oriented in the direction of migration. We propose that active migration is a critical component of gut epithelial turnover.}, author = {Krndija, Denis and Marjou, Fatima El and Guirao, Boris and Richon, Sophie and Leroy, Olivier and Bellaiche, Yohanns and Hannezo, Edouard B and Vignjevic, Danijela Matic}, journal = {Science}, number = {6454}, pages = {705--710}, publisher = {American Association for the Advancement of Science}, title = {{Active cell migration is critical for steady-state epithelial turnover in the gut}}, doi = {10.1126/science.aau3429}, volume = {365}, year = {2019}, } @article{6835, abstract = {We derive the Hasse principle and weak approximation for fibrations of certain varieties in the spirit of work by Colliot-Thélène–Sansuc and Harpaz–Skorobogatov–Wittenberg. Our varieties are defined through polynomials in many variables and part of our work is devoted to establishing Schinzel's hypothesis for polynomials of this kind. This last part is achieved by using arguments behind Birch's well-known result regarding the Hasse principle for complete intersections with the notable difference that we prove our result in 50% fewer variables than in the classical Birch setting. We also study the problem of square-free values of an integer polynomial with 66.6% fewer variables than in the Birch setting.}, author = {Destagnol, Kevin N and Sofos, Efthymios}, issn = {0007-4497}, journal = {Bulletin des Sciences Mathematiques}, number = {11}, publisher = {Elsevier}, title = {{Rational points and prime values of polynomials in moderately many variables}}, doi = {10.1016/j.bulsci.2019.102794}, volume = {156}, year = {2019}, } @article{6836, abstract = {Direct reciprocity is a powerful mechanism for the evolution of cooperation on the basis of repeated interactions1,2,3,4. It requires that interacting individuals are sufficiently equal, such that everyone faces similar consequences when they cooperate or defect. Yet inequality is ubiquitous among humans5,6 and is generally considered to undermine cooperation and welfare7,8,9,10. Most previous models of reciprocity do not include inequality11,12,13,14,15. These models assume that individuals are the same in all relevant aspects. Here we introduce a general framework to study direct reciprocity among unequal individuals. Our model allows for multiple sources of inequality. Subjects can differ in their endowments, their productivities and in how much they benefit from public goods. We find that extreme inequality prevents cooperation. But if subjects differ in productivity, some endowment inequality can be necessary for cooperation to prevail. Our mathematical predictions are supported by a behavioural experiment in which we vary the endowments and productivities of the subjects. We observe that overall welfare is maximized when the two sources of heterogeneity are aligned, such that more productive individuals receive higher endowments. By contrast, when endowments and productivities are misaligned, cooperation quickly breaks down. Our findings have implications for policy-makers concerned with equity, efficiency and the provisioning of public goods.}, author = {Hauser, Oliver P. and Hilbe, Christian and Chatterjee, Krishnendu and Nowak, Martin A.}, issn = {1476-4687}, journal = {Nature}, number = {7770}, pages = {524--527}, publisher = {Springer Nature}, title = {{Social dilemmas among unequals}}, doi = {10.1038/s41586-019-1488-5}, volume = {572}, year = {2019}, } @article{6837, abstract = {Migrasomes are a recently discovered type of extracellular vesicles that are characteristically generated along retraction fibers in migrating cells. Two studies now show how migrasomes are formed and how they function in the physiologically relevant context of the developing zebrafish embryo.}, author = {Tavano, Ste and Heisenberg, Carl-Philipp J}, issn = {1476-4679}, journal = {Nature Cell Biology}, number = {8}, pages = {918--920}, publisher = {Springer Nature}, title = {{Migrasomes take center stage}}, doi = {10.1038/s41556-019-0369-3}, volume = {21}, year = {2019}, } @article{6840, abstract = {We discuss thermodynamic properties of harmonically trapped imperfect quantum gases. The spatial inhomogeneity of these systems imposes a redefinition of the mean-field interparticle potential energy as compared to the homogeneous case. In our approach, it takes the form a 2N2 ωd, where N is the number of particles, ω—the harmonic trap frequency, d—system’s dimensionality, and a is a parameter characterizing the interparticle interaction. We provide arguments that this model corresponds to the limiting case of a long-ranged interparticle potential of vanishingly small amplitude. This conclusion is drawn from a computation similar to the well-known Kac scaling procedure, which is presented here in a form adapted to the case of an isotropic harmonic trap. We show that within the model, the imperfect gas of trapped repulsive bosons undergoes the Bose–Einstein condensation provided d > 1. The main result of our analysis is that in d = 1 the gas of attractive imperfect fermions with a = −aF < 0 is thermodynamically equivalent to the gas of repulsive bosons with a = aB > 0 provided the parameters aF and aB fulfill the relation aB + aF = . This result supplements similar recent conclusion about thermodynamic equivalence of two-dimensional (2D) uniform imperfect repulsive Bose and attractive Fermi gases.}, author = {Mysliwy, Krzysztof and Napiórkowski, Marek}, issn = {1742-5468}, journal = {Journal of Statistical Mechanics: Theory and Experiment}, number = {6}, publisher = {IOP Publishing}, title = {{Thermodynamics of inhomogeneous imperfect quantum gases in harmonic traps}}, doi = {10.1088/1742-5468/ab190d}, volume = {2019}, year = {2019}, } @article{6843, abstract = {The aim of this short paper is to offer a complete characterization of all (not necessarily surjective) isometric embeddings of the Wasserstein space Wp(X), where S is a countable discrete metric space and 0