@article{18433,
  abstract     = {The computer vision and pattern recognition communities have recently witnessed a surge of feature-based methods in object recognition and image retrieval applications. These methods allow representing images as collections of “visual words” and treat them using text search approaches following the “bag of features” paradigm. In this article, we explore analogous approaches in the 3D world applied to the problem of nonrigid shape retrieval in large databases. Using multiscale diffusion heat kernels as “geometric words,” we construct compact and informative shape descriptors by means of the “bag of features” approach. We also show that considering pairs of “geometric words” (“geometric expressions”) allows creating spatially sensitive bags of features with better discriminative power. Finally, adopting metric learning approaches, we show that shapes can be efficiently represented as binary codes. Our approach achieves state-of-the-art results on the SHREC 2010 large-scale shape retrieval benchmark.},
  author       = {Bronstein, Alexander and Bronstein, Michael M. and Guibas, Leonidas J. and Ovsjanikov, Maks},
  issn         = {1557-7368},
  journal      = {ACM Transactions on Graphics},
  number       = {1},
  pages        = {1--20},
  publisher    = {Association for Computing Machinery},
  title        = {{Shape google: Geometric words and expressions for invariant shape retrieval}},
  doi          = {10.1145/1899404.1899405},
  volume       = {30},
  year         = {2011},
}

@article{1863,
  abstract     = {The Levene model is the simplest mathematical model to describe the evolution of gene frequencies in spatially subdivided populations. It provides insight into how locally varying selection promotes a population’s genetic diversity. Despite its simplicity, interesting problems have remained unsolved even in the diallelic case. In this paper we answer an open problem by establishing that for two alleles at one locus and J demes, up to 2J−1 polymorphic equilibria may coexist. We first present a proof for the case of stable monomorphisms and then show that the result also holds for protected alleles. These findings allow us to prove that any odd number (up to 2J−1) of equilibria is possible, before we extend the proof to even numbers. We conclude with some numerical results and show that for J&gt;2, the proportion of parameter space affording this maximum is extremely small.},
  author       = {Sebastian Novak},
  journal      = {Theoretical Population Biology},
  number       = {3},
  pages        = {97 -- 101},
  publisher    = {Academic Press},
  title        = {{The number of equilibria in the diallelic Levene model with multiple demes}},
  doi          = {10.1016/j.tpb.2010.12.002},
  volume       = {79},
  year         = {2011},
}

@article{12649,
  abstract     = {Physically based hydrological models describe natural processes more accurately than conceptual models but require extensive data sets to produce accurate results. To identify the value of different data sets for improving the performance of the distributed hydrological model TOPKAPI we combine a multivariable validation technique with Monte Carlo simulations. The study is carried out in the snow and ice-dominated Rhonegletscher basin, as these types of mountainous basins are generally the most critical with respect to data availability and sensitivity to climate fluctuations. Each observational data set is used individually and in combination with the other data sets to determine a subset of best parameter combinations out of 10,000 Monte Carlos runs performed with randomly generated parameter sets. We validate model results against discharge, glacier mass balance, and satellite snow cover images for a 14 year time period (1994–2007). While the use of all data sets combined provides the best overall model performance (defined by the concurrent best agreement of simulated discharge, snow cover and mass balance with their respective measurements), the use of one or two variables for constraining the model results in poorer performance. Using only one data set for constraining the model glacier mass balance proved to be the most efficient observation leading to the best overall model performance. Our main result is that a combination of discharge and satellite snow cover images is best for improving model performance, since the volumetric information of discharge data and the spatial information of snow cover images are complementary.},
  author       = {Finger, David and Pellicciotti, Francesca and Konz, Markus and Rimkus, Stefan and Burlando, Paolo},
  issn         = {0043-1397},
  journal      = {Water Resources Research},
  number       = {7},
  publisher    = {American Geophysical Union},
  title        = {{The value of glacier mass balance, satellite snow cover images, and hourly discharge for improving the performance of a physically based distributed hydrological model}},
  doi          = {10.1029/2010wr009824},
  volume       = {47},
  year         = {2011},
}

@inbook{12650,
  abstract     = {Streamflow is a hydrological variable measured at a defined river cross-section; it spatially integrates the runoff generating processes in the contributing watershed, including precipitation and air temperature. Trends in streamflow are progressive changes in the time series of streamflow that can be detected with statistical methods and their statistical significance can be assessed. Mountainous regions are particularly vulnerable to streamflow change because of their high specific runoff and the sensitivity to the distribution of precipitation and air temperature, and the processes of snow accumulation and melt.},
  author       = {Molnar, Peter and Burlando, Paolo and Pellicciotti, Francesca},
  booktitle    = {Encyclopedia of Snow, Ice and Glaciers},
  editor       = {Singh, Vijay and Singh, Pratap and Haritashya, Umesh},
  isbn         = {978-90-481-2641-5},
  issn         = {1871-756X},
  pages        = {1084--1089},
  publisher    = {Springer Nature},
  title        = {{Streamflow Trends in Mountainous Regions}},
  doi          = {10.1007/978-90-481-2642-2_543},
  year         = {2011},
}

@article{12651,
  abstract     = {Temperature data from three Automatic Weather Stations and twelve Temperature Loggers are used to investigate the spatiotemporal variability of temperature over a glacier, its main atmospheric controls, the suitability of extrapolation techniques and their effect on melt modeling. We use data collected on Juncal Norte Glacier, central Chile, during one ablation season. We examine temporal and spatial variability in lapse rates (LRs), together with alternative statistical interpolation methods. The main control over the glacier thermal regime is the development of a katabatic boundary layer (KBL). Katabatic wind occurs at night and in the morning and is eroded in the afternoon. LRs reveal strong diurnal variability, with steeper LRs during the day when the katabatic wind weakens and shallower LRs during the night and morning. We suggest that temporally variable LRs should be used to account for the observed change. They tend to be steeper than equivalent constant LRs, and therefore result in a reduction in simulated melt compared to use of constant LRs when extrapolating from lower to higher elevations. In addition to the temporal variability, the temperature-elevation relationship varies also in space. Differences are evident between local LRs and including such variability in melt modeling affects melt simulations. Extrapolation methods based on the spatial variability of the observations after removal of the elevation trend, such as Inverse Distance Weighting or Kriging, do not seem necessary for simulations of gridded temperature data over a glacier.},
  author       = {Petersen, L. and Pellicciotti, Francesca},
  issn         = {0148-0227},
  journal      = {Journal of Geophysical Research: Atmospheres},
  keywords     = {Paleontology, Space and Planetary Science, Earth and Planetary Sciences (miscellaneous), Atmospheric Science, Earth-Surface Processes, Geochemistry and Petrology, Soil Science, Water Science and Technology, Ecology, Aquatic Science, Forestry, Oceanography, Geophysics},
  number       = {D23},
  publisher    = {American Geophysical Union},
  title        = {{Spatial and temporal variability of air temperature on a melting glacier: Atmospheric controls, extrapolation methods and their effect on melt modeling, Juncal Norte Glacier, Chile}},
  doi          = {10.1029/2011jd015842},
  volume       = {116},
  year         = {2011},
}

@article{12652,
  abstract     = {We explore the robustness and transferability of parameterizations of cloud radiative forcing used in glacier melt models at two sites in the Swiss Alps. We also look at the rationale behind some of the most commonly used approaches, and explore the relationship between cloud transmittance and several standard meteorological variables. The 2 m air-temperature diurnal range is the best predictor of variations in cloud transmittance. However, linear and exponential parameterizations can only explain 30–50% of the observed variance in computed cloud transmittance factors. We examine the impact of modelled cloud transmittance factors on both solar radiation and ablation rates computed with an enhanced temperature-index model. The melt model performance decreases when modelled radiation is used, the reduction being due to an underestimation of incoming solar radiation on clear-sky days. The model works well under overcast conditions. We also seek alternatives to the use of in situ ground data. However, outputs from an atmospheric model (2.2 km horizontal resolution) do not seem to provide an alternative to the parameterizations of cloud radiative forcing based on observations of air temperature at glacier automatic weather stations. Conversely, the correct definition of overcast conditions is important.},
  author       = {Pellicciotti, Francesca and Raschle, Thomas and Huerlimann, Thomas and Carenzo, Marco and Burlando, Paolo},
  issn         = {1727-5652},
  journal      = {Journal of Glaciology},
  number       = {202},
  pages        = {367--381},
  publisher    = {Cambridge University Press},
  title        = {{Transmission of solar radiation through clouds on melting glaciers: A comparison of parameterizations and their impact on melt modelling}},
  doi          = {10.3189/002214311796406013},
  volume       = {57},
  year         = {2011},
}

@article{1299,
  abstract     = {Recent experiments have shown that motion detection in Drosophila starts with splitting the visual input into two parallel channels encoding brightness increments (ON) or decrements (OFF). This suggests the existence of either two (ON-ON, OFF-OFF) or four (for all pairwise interactions) separate motion detectors. To decide between these possibilities, we stimulated flies using sequences of ON and OFF brightness pulses while recording from motion-sensitive tangential cells. We found direction-selective responses to sequences of same sign (ON-ON, OFF-OFF), but not of opposite sign (ON-OFF, OFF-ON), refuting the existence of four separate detectors. Based on further measurements, we propose a model that reproduces a variety of additional experimental data sets, including ones that were previously interpreted as support for four separate detectors. Our experiments and the derived model mark an important step in guiding further dissection of the fly motion detection circuit.},
  author       = {Eichner, Hubert and Maximilian Jösch and Schnell, Bettina and Reiff, Dierk F and Borst, Alexander},
  journal      = {Neuron},
  number       = {6},
  pages        = {1155 -- 1164},
  publisher    = {Elsevier},
  title        = {{Internal structure of the fly elementary motion detector}},
  doi          = {10.1016/j.neuron.2011.03.028},
  volume       = {70},
  year         = {2011},
}

@article{1985,
  abstract     = {

In Escherichia coli, the pole-to-pole oscillation of the Min proteins directs septum formation to midcell, which is required for symmetric cell division. In vitro, protein waves emerge from the self-organization of MinD, a membrane-binding ATPase, and its activator MinE. For wave propagation, the proteins need to cycle through states of collective membrane binding and unbinding. Although MinD presumably undergoes cooperative membrane attachment, it is unclear how synchronous detachment is coordinated. We used confocal and single-molecule microscopy to elucidate the order of events during Min wave propagation. We propose that protein detachment at the rear of the wave, and the formation of the E-ring, are accomplished by two complementary processes: first, local accumulation of MinE due to rapid rebinding, leading to dynamic instability; and second, a structural change induced by membrane-interaction of MinE in an equimolar MinD-MinE (MinDE) complex, which supports the robustness of pattern formation.},
  author       = {Martin Loose and Fischer-Friedrich, Elisabeth and Herold, Christoph and Kruse, Karsten and Schwille, Petra },
  journal      = {Nature Structural and Molecular Biology},
  number       = {5},
  pages        = {577 -- 583},
  publisher    = {Nature Publishing Group},
  title        = {{Min protein patterns emerge from rapid rebinding and membrane interaction of MinE}},
  doi          = {10.1038/nsmb.2037},
  volume       = {18},
  year         = {2011},
}

@article{1986,
  abstract     = {One of the most fundamental features of biological systems is probably their ability to self-organize in space and time on different scales. Despite many elaborate theoretical models of how molecular self-organization can come about, only a few experimental systems of biological origin have so far been rigorously described, due mostly to their inherent complexity. The most promising strategy of modern biophysics is thus to identify minimal biological systems showing self-organized emergent behavior. One of the best-understood examples of protein self-organization, which has recently been successfully reconstituted in vitro, is represented by the oscillations of the Min proteins in Escherichia coli. In this review, we summarize the current understanding of the mechanism of Min protein self-organization in vivo and in vitro. We discuss the potential of the Min oscillations to sense the geometry of the cell and suggest that spontaneous protein waves could be a general means of intracellular organization. We hypothesize that cooperative membrane binding and unbinding, e.g., as an energy-dependent switch, may act as an important regulatory mechanism for protein oscillations and pattern formation in the cell.},
  author       = {Martin Loose and Kruse, Karsten and Schwille, Petra },
  journal      = {Annual Review of Biophysics},
  number       = {1},
  pages        = {315 -- 336},
  publisher    = {Annual Reviews},
  title        = {{Protein self-organization: Lessons from the min system}},
  doi          = {10.1146/annurev-biophys-042910-155332},
  volume       = {40},
  year         = {2011},
}

@article{2072,
  abstract     = {Many species have morphologically and genetically differentiated sex chromosomes, such as the XY pair of mammals. Y chromosomes are often highly degenerated and carry few functional genes, so that XY males have only one copy of most Xlinked genes (whereas females have two). As a result, chromosome-wide mechanisms of dosage compensation, such as the mammalian X-inactivation, often evolve to reestablish expression balance. A similar phenomenon is expected in femaleheterogametic species, where ZW females should suffer from imbalances due to W-chromosome degeneration. However, no global dosage compensation mechanisms have been detected in the two independent ZW systems that have been studied systematically (birds and silkworm), leading to the suggestion that lack of global dosage compensation may be a general feature of female-heterogametic species. However, analyses of other independently evolved ZW systems are required to test if this is the case. In this study, we use published genomic and expression data to test for the presence of global dosage compensation in Schistosoma mansoni, a trematode parasite that causes schistosomiasis in humans. We find that Z-linked expression is reduced relative to autosomal expression in females but not males, consistent with incomplete or localized dosage compensation. This gives further support to the theory that female-heterogametic species may not require global mechanisms of dosage compensation.},
  author       = {Vicoso, Beatriz and Bachtrog, Doris},
  journal      = {Genome Biology and Evolution},
  number       = {1},
  pages        = {230 -- 235},
  publisher    = {Oxford University Press},
  title        = {{Lack of global dosage compensation in Schistosoma mansoni, a female-heterogametic parasite}},
  doi          = {10.1093/gbe/evr010},
  volume       = {3},
  year         = {2011},
}

@article{1973,
  abstract     = {Complex I is the first and largest enzyme of the respiratory chain, coupling electron transfer between NADH and ubiquinone to the translocation of four protons across the membrane. It has a central role in cellular energy production and has been implicated in many human neurodegenerative diseases. The L-shaped enzyme consists of hydrophilic and membrane domains. Previously, we determined the structure of the hydrophilic domain. Here we report the crystal structure of the Esherichia coli complex I membrane domain at 3.0 Ã. resolution. It includes six subunits, NuoL, NuoM, NuoN, NuoA, NuoJ and NuoK, with 55 transmembrane helices. The fold of the homologous antiporter-like subunits L, M and N is novel, with two inverted structural repeats of five transmembrane helices arranged, unusually, face-to-back. Each repeat includes a discontinuous transmembrane helix and forms half of a channel across the membrane. A network of conserved polar residues connects the two half-channels, completing the proton translocation pathway. Unexpectedly, lysines rather than carboxylate residues act as the main elements of the proton pump in these subunits. The fourth probable proton-translocation channel is at the interface of subunits N, K, J and A. The structure indicates that proton translocation in complex I, uniquely, involves coordinated conformational changes in six symmetrical structural elements.},
  author       = {Efremov, Rouslan G and Leonid Sazanov},
  journal      = {Nature},
  number       = {7361},
  pages        = {414 -- 421},
  publisher    = {Nature Publishing Group},
  title        = {{Structure of the membrane domain of respiratory complex i}},
  doi          = {10.1038/nature10330},
  volume       = {476},
  year         = {2011},
}

@article{1974,
  abstract     = {Complex I is the first enzyme of the respiratory chain and plays a central role in cellular energy production. It has been implicated in many human neurodegenerative diseases, as well as in ageing. One of the biggest membrane protein complexes, it is an L-shaped assembly consisting of hydrophilic and membrane domains. Previously, we have determined structures of the hydrophilic domain in several redox states. Last year was marked by fascinating breakthroughs in the understanding of the complete structure. We described the architecture of the membrane domain and of the entire bacterial complex I. X-ray analysis of the larger mitochondrial enzyme has also been published. The core subunits of the bacterial and mitochondrial enzymes have remarkably similar structures. The proposed mechanism of coupling between electron transfer and proton translocation involves long-range conformational changes, coordinated in part by a long α-helix, akin to the coupling rod of a steam engine.},
  author       = {Efremov, Rouslan G and Leonid Sazanov},
  journal      = {Current Opinion in Structural Biology},
  number       = {4},
  pages        = {532 -- 540},
  publisher    = {Elsevier},
  title        = {{Respiratory complex I: 'steam engine' of the cell?}},
  doi          = {10.1016/j.sbi.2011.07.002},
  volume       = {21},
  year         = {2011},
}

@article{1975,
  abstract     = {Modern α-proteobacteria are thought to be closely related to the ancient symbiont of eukaryotes, an ancestor of mitochondria. Respiratory complex I from α-proteobacteria and mitochondria is well conserved at the level of the 14 &quot;core&quot; subunits, consistent with that notion. Mitochondrial complex I contains the core subunits, present in all species, and up to 31 &quot;supernumerary&quot; subunits, generally thought to have originated only within eukaryotic lineages. However, the full protein composition of an α-proteobacterial complex I has not been established previously. Here, we report the first purification and characterization of complex I from the α-proteobacterium Paracoccus denitrificans. Single particle electron microscopy shows that the complex has a well defined L-shape. Unexpectedly, in addition to the 14 core subunits, the enzyme also contains homologues of three supernumerary mitochondrial subunits as follows: B17.2, AQDQ/18, and 13 kDa (bovine nomenclature). This finding suggests that evolution of complex I via addition of supernumerary or &quot;accessory&quot; subunits started before the original endosymbiotic event that led to the creation of the eukaryotic cell. It also provides further confirmation that α-proteobacteria are the closest extant relatives of mitochondria.},
  author       = {Yip, Chui Y and Harbour, Michael E and Jayawardena, Kamburapola G and Fearnley, Ian M and Leonid Sazanov},
  journal      = {Journal of Biological Chemistry},
  number       = {7},
  pages        = {5023 -- 5033},
  publisher    = {American Society for Biochemistry and Molecular Biology},
  title        = {{Evolution of respiratory complex I &quot;Supernumerary&quot; subunits are present in the α-proteobacterial enzyme}},
  doi          = {10.1074/jbc.M110.194993},
  volume       = {286},
  year         = {2011},
}

@inproceedings{10907,
  abstract     = {This paper presents a method to create a model of an articulated object using the planar motion in an initialization video. The model consists of rigid parts connected by points of articulation. The rigid parts are described by the positions of salient feature-points tracked throughout the video. Following a filtering step that identifies points that belong to different objects, rigid parts are found by a grouping process in a graph pyramid. Valid articulation points are selected by verifying multiple hypotheses for each pair of parts.},
  author       = {Artner, Nicole M. and Ion, Adrian and Kropatsch, Walter G.},
  booktitle    = {Graph-Based Representations in Pattern Recognition},
  editor       = {Jiang, Xiaoyi and Ferrer, Miquel and Torsello, Andrea},
  isbn         = {9783642208430},
  issn         = {1611-3349},
  location     = {Münster, Germany},
  pages        = {215--224},
  publisher    = {Springer},
  title        = {{Spatio-temporal extraction of articulated models in a graph pyramid}},
  doi          = {10.1007/978-3-642-20844-7_22},
  volume       = {6658},
  year         = {2011},
}

@article{11094,
  abstract     = {Nuclear pore complexes (NPCs) assemble at the end of mitosis during nuclear envelope (NE) reformation and into an intact NE as cells progress through interphase. Although recent studies have shown that NPC formation occurs by two different molecular mechanisms at two distinct cell cycle stages, little is known about the molecular players that mediate the fusion of the outer and inner nuclear membranes to form pores. In this paper, we provide evidence that the transmembrane nucleoporin (Nup), POM121, but not the Nup107–160 complex, is present at new pore assembly sites at a time that coincides with inner nuclear membrane (INM) and outer nuclear membrane (ONM) fusion. Overexpression of POM121 resulted in juxtaposition of the INM and ONM. Additionally, Sun1, an INM protein that is known to interact with the cytoskeleton, was specifically required for interphase assembly and localized with POM121 at forming pores. We propose a model in which POM121 and Sun1 interact transiently to promote early steps of interphase NPC assembly.},
  author       = {Talamas, Jessica A. and HETZER, Martin W},
  issn         = {1540-8140},
  journal      = {Journal of Cell Biology},
  keywords     = {Cell Biology},
  number       = {1},
  pages        = {27--37},
  publisher    = {Rockefeller University Press},
  title        = {{POM121 and Sun1 play a role in early steps of interphase NPC assembly}},
  doi          = {10.1083/jcb.201012154},
  volume       = {194},
  year         = {2011},
}

@article{11095,
  author       = {HETZER, Martin W and Cavalli, Giacomo},
  issn         = {0955-0674},
  journal      = {Current Opinion in Cell Biology},
  keywords     = {Cell Biology},
  number       = {3},
  pages        = {255--257},
  publisher    = {Elsevier},
  title        = {{Editorial overview}},
  doi          = {10.1016/j.ceb.2011.04.013},
  volume       = {23},
  year         = {2011},
}

@article{11096,
  abstract     = {As the gatekeepers of the eukaryotic cell nucleus, nuclear pore complexes (NPCs) mediate all molecular trafficking between the nucleoplasm and the cytoplasm. In recent years, transport-independent functions of NPC components, nucleoporins, have been identified including roles in chromatin organization and gene regulation. Here, we summarize our current view of the NPC as a dynamic hub for the integration of chromatin regulation and nuclear trafficking and discuss the functional interplay between nucleoporins and the nuclear genome.},
  author       = {Liang, Yun and HETZER, Martin W},
  issn         = {0955-0674},
  journal      = {Current Opinion in Cell Biology},
  keywords     = {Cell Biology},
  number       = {1},
  pages        = {65--70},
  publisher    = {Elsevier},
  title        = {{Functional interactions between nucleoporins and chromatin}},
  doi          = {10.1016/j.ceb.2010.09.008},
  volume       = {23},
  year         = {2011},
}

@article{11100,
  abstract     = {Eukaryotic cell function depends on the physical separation of nucleoplasmic and cytoplasmic components by the nuclear envelope (NE). Molecular communication between the two compartments involves active, signal-mediated trafficking, a function that is exclusively performed by nuclear pore complexes (NPCs). The individual NPC components and the mechanisms that are involved in nuclear trafficking are well documented and have become textbook knowledge. However, in addition to their roles as nuclear gatekeepers, NPC components-nucleoporins-have been shown to have critical roles in chromatin organization and gene regulation. These findings have sparked new enthusiasm to study the roles of this multiprotein complex in nuclear organization and explore novel functions that in some cases appear to go beyond a role in transport. Here, we discuss our present view of NPC biogenesis, which is tightly linked to proper cell cycle progression and cell differentiation. In addition, we summarize new data suggesting that NPCs represent dynamic hubs for the integration of gene regulation and nuclear transport processes.},
  author       = {Capelson, M. and Doucet, C. and HETZER, Martin W},
  isbn         = {9781936113071},
  issn         = {0091-7451},
  journal      = {Cold Spring Harbor Symposia on Quantitative Biology},
  keywords     = {Genetics, Molecular Biology, Biochemistry},
  pages        = {585--597},
  publisher    = {Cold Spring Harbor Laboratory Press},
  title        = {{Nuclear pore complexes: Guardians of the nuclear genome}},
  doi          = {10.1101/sqb.2010.75.059},
  volume       = {75},
  year         = {2011},
}

@article{112,
  abstract     = {Particle beams are important tools for probing atomic and molecular interactions. Here we demonstrate that particle beams also offer a unique opportunity to investigate interactions in macroscopic systems, such as granular media. Motivated by recent experiments on streams of grains that exhibit liquid-like breakup into droplets, we use molecular dynamics simulations to investigate the evolution of a dense stream of macroscopic spheres accelerating out of an opening at the bottom of a reservoir. We show how nanoscale details associated with energy dissipation during collisions modify the stream\'s macroscopic behavior. We find that inelastic collisions collimate the stream, while the presence of short-range attractive interactions drives structure formation. Parameterizing the collision dynamics by the coefficient of restitution (i.e., the ratio of relative velocities before and after impact) and the strength of the cohesive interaction, we map out a spectrum of behaviors that ranges from gaslike jets in which all grains drift apart to liquid-like streams that break into large droplets containing hundreds of grains. We also find a new, intermediate regime in which small aggregates form by capture from the gas phase, similar to what can be observed in molecular beams. Our results show that nearly all aspects of stream behavior are closely related to the velocity gradient associated with vertical free fall. Led by this observation, we propose a simple energy balance model to explain the droplet formation process. The qualitative as well as many quantitative features of the simulations and the model compare well with available experimental data and provide a first quantitative measure of the role of attractions in freely cooling granular streams.},
  author       = {Waitukaitis, Scott R and Grütjen, Helge and Royer, John and Jaeger, Heinrich},
  journal      = {Physical Review E},
  number       = {5},
  publisher    = {American Physical Society},
  title        = {{Droplet and cluster formation in freely falling granular streams}},
  doi          = {10.1103/PhysRevE.83.051302},
  volume       = {83},
  year         = {2011},
}

@article{10389,
  abstract     = {We perform numerical simulations to study self-assembly of nanoparticles mediated by an elastic planar surface. We show how the nontrivial elastic response to deformations of these surfaces leads to anisotropic interactions between the particles resulting in aggregates having different geometrical features. The morphology of the patterns can be controlled by the mechanical properties of the surface and the strength of the particle adhesion. We use simple scaling arguments to understand the formation of the different structures, and we show how the adhering particles can cause the underlying elastic substrate to wrinkle if two of its opposite edges are clamped. Finally, we discuss the implications of our results and suggest how elastic surfaces could be used in nanofabrication.},
  author       = {Šarić, Anđela and Cacciuto, Angelo},
  issn         = {1744-6848},
  journal      = {Soft Matter},
  keywords     = {condensed matter physics, general chemistry},
  number       = {18},
  publisher    = {Royal Society of Chemistry},
  title        = {{Soft elastic surfaces as a platform for particle self-assembly}},
  doi          = {10.1039/c1sm05773a},
  volume       = {7},
  year         = {2011},
}

