@article{21108, abstract = {We report here the crystal structure of the partially self-complementary decameric sequence d(CGGCGGCCGC), which self assembles to form a four-way junction with sticky ends. Each junction binds to four others through Watson–Crick base pairing at the sticky ends to form a rhombic structure. The rhombuses bind to each other and form two dimensional tiles. The tiles stack to form the crystal. The crystal diffracted in the space group P1 to a resolution of 2.5 Å. The junction has the anti-parallel stacked-X conformation like other junction structures, though the formation of the rhombic net noticeably alters the details of the junction geometry.}, author = {Venkadesh, S. and Mandal, Pradeep K and Gautham, N.}, issn = {0006-291X}, journal = {Biochemical and Biophysical Research Communications}, number = {3}, pages = {548--551}, publisher = {Elsevier}, title = {{The sequence d(CGGCGGCCGC) self-assembles into a two dimensional rhombic DNA lattice}}, doi = {10.1016/j.bbrc.2011.03.056}, volume = {407}, year = {2011}, } @article{21109, abstract = {We report the 2.6 Å resolution crystal structure of the tetra-decamer d(CGCGGGTACCCGCG) in the tetragonal space group P43. This sequence contains the KpnI restriction site GGTACC in the centre which is flanked by alternating ‘CG’ sequences, and has a ‘TA’ step at the centre. These are features could favour the left-handed Z type helix. Despite this, overall the molecule has the A form. This is the first tetra-decamer crystallized in the A-DNA conformation, i.e. more than one full turn of the A helix. The crystallographic asymmetric unit consists of one tetra-decamer duplex. The helical twist and slide, as well as the base pair–base pair stacking interactions show alternations at the alternating pyrimidine–purine and purine–pyrimidine base steps. This variation is reminiscent of the dinucleotide repeat in left-handed Z-DNA helices. The crystal packing is unlike other A-DNA crystal structures, with each helix having a large number of contacts of many different types with symmetry-related neighbours.}, author = {Venkadesh, S. and Mandal, Pradeep K and Gautham, N.}, issn = {0006-291X}, journal = {Biochemical and Biophysical Research Communications}, number = {2}, pages = {307--312}, publisher = {Elsevier}, title = {{The structure of a full turn of an A-DNA duplex d(CGCGGGTACCCGCG)2}}, doi = {10.1016/j.bbrc.2011.03.007}, volume = {407}, year = {2011}, } @inbook{2116, abstract = {Let P be the Ornstein-Uhlenbeck semigroup associated with the stochastic Cauchy problem dU(t)=AU(t)dt+dWH(t), where A is the generator of a C 0-semigroup S on a Banach space E, H is a Hilbert subspace of E, and W H is an H-cylindrical Brownian motion. Assuming that S restricts to a C 0-semigroup on H, we obtain L p -bounds for D H P(t). We show that if P is analytic, then the invariance assumption is fulfilled. As an application we determine the L p -domain of the generator of P explicitly in the case where S restricts to a C 0-semigroup on H which is similar to an analytic contraction semigroup. The results are applied to the 1D stochastic heat equation driven by additive space-time white noise.}, author = {Jan Maas and Van Neerven, Jan}, booktitle = {Parabolic Problems}, pages = {463 -- 477}, publisher = {Birkhäuser}, title = {{Gradient estimates and domain identification for analytic Ornstein-Uhlenbeck operators}}, doi = {10.1007/978-3-0348-0075-4_24}, volume = {80}, year = {2011}, } @article{2122, abstract = {We study, in L1(R̃n; γ) with respect to the gaussian measure, non- tangential maximal functions and conical square functions associ- ated with the Ornstein-Uhlenbeck operator by developing a set of techniques which allow us, to some extent, to compensate for the non-doubling character of the gaussian measure. The main result asserts that conical square functions can be controlled in L1-norm by non-tangential maximal functions. Along the way we prove a change of aperture result for the latter. This complements recent results on gaussian Hardy spaces due to Mauceri and Meda.}, author = {Jan Maas and van Neerven, Jan M and Portal, Pierre}, journal = {Publicacions Matemàtiques}, number = {2}, pages = {313 -- 341}, publisher = {Universitat Autònoma de Barcelona, Departament de Matemàtique}, title = {{Conical square functions and non-tangential maximal functions with respect to the Gaussian measure}}, doi = {10.5565/PUBLMAT_55211_03 }, volume = {55}, year = {2011}, } @article{2123, abstract = {We prove a Trotter product formula for gradient flows in metric spaces. This result is applied to establish convergence in the L 2-Wasserstein metric of the splitting method for some Fokker-Planck equations and porous medium type equations perturbed by a potential.}, author = {Clément, Philippe and Maas, Jan}, journal = {Journal of Evolution Equations}, number = {2}, pages = {405 -- 427}, publisher = {Birkhäuser}, title = {{A Trotter product formula for gradient flows in metric spaces}}, doi = {10.1007/s00028-010-0096-5}, volume = {11}, year = {2011}, } @article{2126, abstract = {Let K be an irreducible and reversible Markov kernel on a finite set X. We construct a metric W on the set of probability measures on X and show that with respect to this metric, the law of the continuous time Markov chain evolves as the gradient flow of the entropy. This result is a discrete counterpart of the Wasserstein gradient flow interpretation of the heat flow in Rn by Jordan, Kinderlehrer and Otto (1998). The metric W is similar to, but different from, the L2-Wasserstein metric, and is defined via a discrete variant of the Benamou–Brenier formula. }, author = {Jan Maas}, journal = {Journal of Functional Analysis}, number = {8}, pages = {2250 -- 2292}, publisher = {Academic Press}, title = {{Gradient flows of the entropy for finite Markov chains}}, doi = {10.1016/j.jfa.2011.06.009 }, volume = {261}, year = {2011}, } @unpublished{2138, abstract = {A (diatomic) shape resonance is a metastable state of a pair of colliding atoms quasi-bound by the centrifugal barrier imposed by the angular momentum involved in the collision. The temporary trapping of the atoms' scattering wavefunction corresponds to an enhanced atom pair density at low interatomic separations. This leads to larger overlap of the wavefunctions involved in a molecule formation process such as photoassociation, rendering the process more efficient. However, for an ensemble of atoms, the atom pair density will only be enhanced if the energy of the resonance comes close to the temperature of the atomic ensemble. Herein we explore the possibility of controlling the energy of a shape resonance by shifting it toward the temperature of atoms confined in a trap. The shifts are imparted by the interaction of non-resonant light with the anisotropic polarizability of the atom pair, which affects both the centrifugal barrier and the pair's rotational and vibrational levels. We find that at laser intensities of up to 5×109 W/cm2 the pair density is increased by one order of magnitude for 87Rb atoms at 100μK and by two orders of magnitude for 88Sr atoms at 20μK.}, author = {Ağanoğlu, Ruzin and Mikhail Lemeshko and Friedrich, Břetislav and González-Férez, Rosario and Koch, Christiane P}, booktitle = {Unknown}, publisher = {ArXiv}, title = {{Controlling a diatomic shape resonance with non-resonant light}}, year = {2011}, } @article{2198, abstract = {We show that dressing polar molecules with a far-off-resonant optical field leads to new types of intermolecular potentials, which undergo a crossover from the inverse power to oscillating behavior depending on the intermolecular distance, and whose parameters can be tuned by varying the laser intensity and wavelength. We present analytic expressions for the potential energy surfaces, thereby providing direct access to the parameters of an optical field required to design intermolecular interactions experimentally.}, author = {Mikhail Lemeshko}, journal = {Physical Review A - Atomic, Molecular, and Optical Physics}, number = {5}, publisher = {American Physical Society}, title = {{Shaping interactions between polar molecules with far-off-resonant light}}, doi = {10.1103/PhysRevA.83.051402}, volume = {83}, year = {2011}, } @article{2199, abstract = {By invoking supersymmetry, we found a condition under which the Stark-effect problem for a polar and polarizable molecule subject to nonresonant electric fields becomes exactly solvable for the family of stretched states. The analytic expressions for the wave function and eigenenergy and other expectation values allow one to readily reverse-engineer the problem of finding the values of the interaction parameters required for creating quantum states with preordained characteristics. The method also allows the construction of families of isospectral potentials, realizable with combined fields.}, author = {Mikhail Lemeshko and Mustafa, Mustafa K and Kais, Sabre and Friedrich, Břetislav}, journal = {Physical Review A - Atomic, Molecular, and Optical Physics}, number = {4}, publisher = {American Physical Society}, title = {{Supersymmetric factorization yields exact solutions to the molecular Stark-effect problem for "stretched" states}}, doi = {10.1103/PhysRevA.83.043415}, volume = {83}, year = {2011}, } @article{2200, abstract = {We made use of supersymmetric (SUSY) quantum mechanics to find the condition under which the Stark effect problem for a polar and polarizable closed-shell diatomic molecule subjected to collinear electrostatic and nonresonant radiative fields becomes exactly solvable. The condition Δω = ω2/4(m+1)2 connects values of the dimensionless parameters ω and Δω that characterize the strengths of the permanent and induced dipole interactions of the molecule with the respective fields. The exact solutions are obtained for the \J̃ = m, m; ω, Δω) family of 'stretched' states. The field-free and strong-field limits of the combined-fields problem were found to exhibit supersymmetry and shape invariance, which is indeed the reason why they are analytically solvable. By making use of the analytic form of the \J̃ = m,m; ω, Δω) wavefunctions, we obtained simple formulae for the expectation values of the space-fixed electric dipole moment, the alignment cosine and the angular momentum squared, and derived a 'sum rule' that combines the above expectation values into a formula for the eigenenergy. The analytic expressions for the characteristics of the strongly oriented and aligned states provide direct access to the values of the interaction parameters required for creating such states in the laboratory.}, author = {Mikhail Lemeshko and Mustafa, Mustafa K and Kais, Sabre and Friedrich, Břetislav}, journal = {New Journal of Physics}, publisher = {IOP Publishing Ltd.}, title = {{Supersymmetry identifies molecular Stark states whose eigenproperties can be obtained analytically}}, doi = {10.1088/1367-2630/13/6/063036}, volume = {13}, year = {2011}, } @misc{2312, abstract = {Soon, the genetic basis of most human Mendelian diseases will be solved. The next challenge will be to leverage this information to uncover basic mechanisms of disease and develop new therapies. To understand how this transformation is already beginning to unfold, we focus on the ciliopathies, a class of multi-organ diseases caused by disruption of the primary cilium. Through a convergence of data involving mutant gene discovery, proteomics, and cell biology, more than a dozen phenotypically distinguishable conditions are now united as ciliopathies. Sitting at the interface between simple and complex genetic conditions, these diseases provide clues to the future direction of human genetics.}, author = {Gaia Novarino and Akizu, Naiara and Gleeson, Joseph G}, booktitle = {Cell}, number = {1}, pages = {70 -- 79}, publisher = {Cell Press}, title = {{Modeling human disease in humans: The ciliopathies}}, doi = {10.1016/j.cell.2011.09.014}, volume = {147}, year = {2011}, } @inproceedings{2320, abstract = {The binding of polarons, or its absence, is an old and subtle topic. After defining the model we state some recent theorems of ours. First, the transition from many-body collapse to the existence of a thermodynamic limit for N polarons occurs precisely at U = 2α, where U is the electronic Coulomb repulsion and α is the polaron coupling constant. Second, if U is large enough, there is no multi-polaron binding of any kind. We also discuss the Pekar-Tomasevich approximation to the ground state energy, which is valid for large α. Finally, we derive exact results, not reported before, about the one-dimensional toy model introduced by E. P. Gross.}, author = {Frank, Rupert L and Lieb, Élliott H and Robert Seiringer and Thomas, Lawrence E}, pages = {21 -- 32}, publisher = {World Scientific Publishing}, title = {{Binding, stability, and non-binding of multi-polaron systems}}, doi = {10.1142/9789814350365_0002}, year = {2011}, } @inproceedings{2321, abstract = {We derive a sharp bound on the location of non-positive eigenvalues of Schrödinger operators on the half-line with complex-valued potentials.}, author = {Frank, Rupert L and Laptev, Ari and Robert Seiringer}, pages = {39 -- 44}, publisher = {Springer}, title = {{ A sharp bound on eigenvalues of Schrödinger operators on the halfline with complex-valued potentials}}, doi = {10.1007/978-3-7643-9994-8_3}, volume = {214}, year = {2011}, } @article{233, abstract = {For an irreducible polynomial in at most two variables the problem of representing power-free integers is investigated. }, author = {Timothy Browning}, journal = {Archiv der Mathematik}, number = {2}, pages = {139 -- 150}, publisher = {Birkhäuser}, title = {{Power-free values of polynomials}}, doi = {10.1007/s00013-011-0224-7}, volume = {96}, year = {2011}, } @article{234, abstract = {We investigate the average order of the divisor function at values of binary cubic forms that are reducible over Q and discuss some applications.}, author = {Timothy Browning}, journal = {Journal de Theorie des Nombres de Bordeaux}, number = {3}, pages = {579 -- 602}, publisher = {Universite de Bordeaux}, title = {{The divisor problem for binary cubic forms}}, doi = {10.5802/jtnb.778}, volume = {23}, year = {2011}, } @article{235, abstract = {For given positive integers m and n, we consider the frequency of representations of m/n as a sum of unit fractions.}, author = {Browning, Timothy D and Elsholtz, Christian}, journal = {Illinois Journal of Mathematics}, number = {2}, pages = {685 -- 696}, publisher = {University of Illinois Press}, title = {{The number of representations of rationals as a sum of unit fractions}}, volume = {55}, year = {2011}, } @article{236, abstract = {An asymptotic formula is established for the number of Q-rational points of bounded height on a nonsingular quartic Del Pezzo surface with a conic bundle structure.}, author = {de la Bretèche, Régis and Timothy Browning}, journal = {Duke Mathematical Journal}, number = {1}, pages = {1 -- 69}, publisher = {Duke University Press}, title = {{Manin's conjecture for quartic Del Pezzo surfaces with a conic fibration}}, doi = {10.1215/00127094-1443466}, volume = {160}, year = {2011}, } @article{239, abstract = {An effective search bound is established for the least non-trivial integer zero of an arbitrary cubic form C ε ℤ[X 1,...,X n], provided that n ≥ 17.}, author = {Timothy Browning and Dietmann, Rainer and Elliott, Peter}, journal = {Mathematische Annalen}, number = {3}, pages = {745 -- 778}, publisher = {Springer}, title = {{Least zero of a cubic form}}, doi = {10.1007/s00208-011-0651-6}, volume = {352}, year = {2011}, } @article{2390, abstract = {We resolve several longstanding problems concerning the stability and the absence of multi-particle binding for N≥2 polarons. Fröhlich's 1937 polaron model describes non-relativistic particles interacting with a scalar quantized field with coupling √α, and with each other by Coulomb repulsion of strength U. We prove the following: (i) While there is a known thermodynamic instability for U<2α, stability of matter does hold for U>2α, that is, the ground state energy per particle has a finite limit as N→∞. (ii) There is no binding of any kind if U exceeds a critical value that depends on α but not on N. The same results are shown to hold for the Pekar-Tomasevich model.}, author = {Frank, Rupert L and Lieb, Élliott H and Robert Seiringer and Thomas, Lawrence E}, journal = {Publications Mathematiques de l Institut des Hautes Etudes Scientifiques}, number = {1}, pages = {39 -- 67}, publisher = {Springer}, title = {{Stability and absence of binding for multi-polaron systems}}, doi = {10.1007/s10240-011-0031-5}, volume = {113}, year = {2011}, } @article{2391, abstract = {The change in energy of an ideal Fermi gas when a local one-body potential is inserted into the system, or when the density is changed locally, are important quantities in condensed matter physics. We show that they can be rigorously bounded from below by a universal constant times the value given by the semiclassical approximation.}, author = {Frank, Rupert L and Lewin, Mathieu and Lieb, Élliott H and Robert Seiringer}, journal = {Physical Review Letters}, number = {15}, publisher = {American Physical Society}, title = {{Energy cost to make a hole in the fermi sea}}, doi = {10.1103/PhysRevLett.106.150402}, volume = {106}, year = {2011}, }