[{"keyword":["Space and Planetary Science","Astronomy and Astrophysics"],"scopus_import":"1","article_processing_charge":"No","day":"01","article_type":"original","citation":{"ista":"Vink JS, Mehner A, Crowther PA, Fullerton A, Garcia M, Martins F, Morrell N, Oskinova LM, St-Louis N, ud-Doula A, Sander AAC, Sana H, Bouret J-C, Kubátová B, Marchant P, Martins LP, Wofford A, van Loon JT, Grace Telford O, Götberg YLL, Bowman DM, Erba C, Kalari VM, Abdul-Masih M, Alkousa T, Backs F, Barbosa CL, Berlanas SR, Bernini-Peron M, Bestenlehner JM, Blomme R, Bodensteiner J, Brands SA, Evans CJ, David-Uraz A, Driessen FA, Dsilva K, Geen S, Gómez-González VMA, Grassitelli L, Hamann W-R, Hawcroft C, Herrero A, Higgins ER, John Hillier D, Ignace R, Istrate AG, Kaper L, Kee ND, Kehrig C, Keszthelyi Z, Klencki J, de Koter A, Kuiper R, Laplace E, Larkin CJK, Lefever RR, Leitherer C, Lennon DJ, Mahy L, Maíz Apellániz J, Maravelias G, Marcolino W, McLeod AF, de Mink SE, Najarro F, Oey MS, Parsons TN, Pauli D, Pedersen MG, Prinja RK, Ramachandran V, Ramírez-Tannus MC, Sabhahit GN, Schootemeijer A, Reyero Serantes S, Shenar T, Stringfellow GS, Sudnik N, Tramper F, Wang L. 2023. X-shooting ULLYSES: Massive stars at low metallicity. I. Project description. Astronomy & Astrophysics. 675, A154.","apa":"Vink, J. S., Mehner, A., Crowther, P. A., Fullerton, A., Garcia, M., Martins, F., … Wang, L. (2023). X-shooting ULLYSES: Massive stars at low metallicity. I. Project description. Astronomy & Astrophysics. EDP Sciences. https://doi.org/10.1051/0004-6361/202245650","ieee":"J. S. Vink et al., “X-shooting ULLYSES: Massive stars at low metallicity. I. Project description,” Astronomy & Astrophysics, vol. 675. EDP Sciences, 2023.","ama":"Vink JS, Mehner A, Crowther PA, et al. X-shooting ULLYSES: Massive stars at low metallicity. I. Project description. Astronomy & Astrophysics. 2023;675. doi:10.1051/0004-6361/202245650","chicago":"Vink, Jorick S., A. Mehner, P. A. Crowther, A. Fullerton, M. Garcia, F. Martins, N. Morrell, et al. “X-Shooting ULLYSES: Massive Stars at Low Metallicity. I. Project Description.” Astronomy & Astrophysics. EDP Sciences, 2023. https://doi.org/10.1051/0004-6361/202245650.","mla":"Vink, Jorick S., et al. “X-Shooting ULLYSES: Massive Stars at Low Metallicity. I. Project Description.” Astronomy & Astrophysics, vol. 675, A154, EDP Sciences, 2023, doi:10.1051/0004-6361/202245650.","short":"J.S. Vink, A. Mehner, P.A. Crowther, A. Fullerton, M. Garcia, F. Martins, N. Morrell, L.M. Oskinova, N. St-Louis, A. ud-Doula, A.A.C. Sander, H. Sana, J.-C. Bouret, B. Kubátová, P. Marchant, L.P. Martins, A. Wofford, J.T. van Loon, O. Grace Telford, Y.L.L. Götberg, D.M. Bowman, C. Erba, V.M. Kalari, M. Abdul-Masih, T. Alkousa, F. Backs, C.L. Barbosa, S.R. Berlanas, M. Bernini-Peron, J.M. Bestenlehner, R. Blomme, J. Bodensteiner, S.A. Brands, C.J. Evans, A. David-Uraz, F.A. Driessen, K. Dsilva, S. Geen, V.M.A. Gómez-González, L. Grassitelli, W.-R. Hamann, C. Hawcroft, A. Herrero, E.R. Higgins, D. John Hillier, R. Ignace, A.G. Istrate, L. Kaper, N.D. Kee, C. Kehrig, Z. Keszthelyi, J. Klencki, A. de Koter, R. Kuiper, E. Laplace, C.J.K. Larkin, R.R. Lefever, C. Leitherer, D.J. Lennon, L. Mahy, J. Maíz Apellániz, G. Maravelias, W. Marcolino, A.F. McLeod, S.E. de Mink, F. Najarro, M.S. Oey, T.N. Parsons, D. Pauli, M.G. Pedersen, R.K. Prinja, V. Ramachandran, M.C. Ramírez-Tannus, G.N. Sabhahit, A. Schootemeijer, S. Reyero Serantes, T. Shenar, G.S. Stringfellow, N. Sudnik, F. Tramper, L. Wang, Astronomy & Astrophysics 675 (2023)."},"publication":"Astronomy & Astrophysics","date_published":"2023-07-01T00:00:00Z","type":"journal_article","abstract":[{"text":"Observations of individual massive stars, super-luminous supernovae, gamma-ray bursts, and gravitational wave events involving spectacular black hole mergers indicate that the low-metallicity Universe is fundamentally different from our own Galaxy. Many transient phenomena will remain enigmatic until we achieve a firm understanding of the physics and evolution of massive stars at low metallicity (Z). The Hubble Space Telescope has devoted 500 orbits to observing ∼250 massive stars at low Z in the ultraviolet (UV) with the COS and STIS spectrographs under the ULLYSES programme. The complementary X-Shooting ULLYSES (XShootU) project provides an enhanced legacy value with high-quality optical and near-infrared spectra obtained with the wide-wavelength coverage X-shooter spectrograph at ESO’s Very Large Telescope. We present an overview of the XShootU project, showing that combining ULLYSES UV and XShootU optical spectra is critical for the uniform determination of stellar parameters such as effective temperature, surface gravity, luminosity, and abundances, as well as wind properties such as mass-loss rates as a function of Z. As uncertainties in stellar and wind parameters percolate into many adjacent areas of astrophysics, the data and modelling of the XShootU project is expected to be a game changer for our physical understanding of massive stars at low Z. To be able to confidently interpret James Webb Space Telescope spectra of the first stellar generations, the individual spectra of low-Z stars need to be understood, which is exactly where XShootU can deliver.","lang":"eng"}],"intvolume":" 675","status":"public","title":"X-shooting ULLYSES: Massive stars at low metallicity. I. Project description","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"14103","oa_version":"Published Version","publication_identifier":{"eissn":["1432-0746"],"issn":["0004-6361"]},"month":"07","quality_controlled":"1","oa":1,"main_file_link":[{"url":"https://doi.org/10.1051/0004-6361/202245650","open_access":"1"}],"external_id":{"arxiv":["2305.06376"]},"language":[{"iso":"eng"}],"doi":"10.1051/0004-6361/202245650","article_number":"A154","extern":"1","publisher":"EDP Sciences","publication_status":"published","year":"2023","volume":675,"date_updated":"2023-08-22T11:01:07Z","date_created":"2023-08-21T10:12:35Z","author":[{"first_name":"Jorick S.","last_name":"Vink","full_name":"Vink, Jorick S."},{"first_name":"A.","last_name":"Mehner","full_name":"Mehner, A."},{"full_name":"Crowther, P. A.","last_name":"Crowther","first_name":"P. A."},{"full_name":"Fullerton, A.","last_name":"Fullerton","first_name":"A."},{"first_name":"M.","last_name":"Garcia","full_name":"Garcia, M."},{"first_name":"F.","last_name":"Martins","full_name":"Martins, F."},{"last_name":"Morrell","first_name":"N.","full_name":"Morrell, N."},{"full_name":"Oskinova, L. M.","last_name":"Oskinova","first_name":"L. M."},{"last_name":"St-Louis","first_name":"N.","full_name":"St-Louis, N."},{"first_name":"A.","last_name":"ud-Doula","full_name":"ud-Doula, A."},{"last_name":"Sander","first_name":"A. A. C.","full_name":"Sander, A. A. C."},{"full_name":"Sana, H.","first_name":"H.","last_name":"Sana"},{"full_name":"Bouret, J.-C.","first_name":"J.-C.","last_name":"Bouret"},{"full_name":"Kubátová, B.","last_name":"Kubátová","first_name":"B."},{"last_name":"Marchant","first_name":"P.","full_name":"Marchant, P."},{"full_name":"Martins, L. P.","first_name":"L. P.","last_name":"Martins"},{"last_name":"Wofford","first_name":"A.","full_name":"Wofford, A."},{"full_name":"van Loon, J. Th.","first_name":"J. Th.","last_name":"van Loon"},{"full_name":"Grace Telford, O.","first_name":"O.","last_name":"Grace Telford"},{"last_name":"Götberg","first_name":"Ylva Louise Linsdotter","orcid":"0000-0002-6960-6911","id":"d0648d0c-0f64-11ee-a2e0-dd0faa2e4f7d","full_name":"Götberg, Ylva Louise Linsdotter"},{"full_name":"Bowman, D. M.","last_name":"Bowman","first_name":"D. M."},{"first_name":"C.","last_name":"Erba","full_name":"Erba, C."},{"last_name":"Kalari","first_name":"V. M.","full_name":"Kalari, V. M."},{"first_name":"M.","last_name":"Abdul-Masih","full_name":"Abdul-Masih, M."},{"full_name":"Alkousa, T.","last_name":"Alkousa","first_name":"T."},{"full_name":"Backs, F.","last_name":"Backs","first_name":"F."},{"full_name":"Barbosa, C. L.","last_name":"Barbosa","first_name":"C. L."},{"full_name":"Berlanas, S. R.","last_name":"Berlanas","first_name":"S. R."},{"full_name":"Bernini-Peron, M.","first_name":"M.","last_name":"Bernini-Peron"},{"full_name":"Bestenlehner, J. M.","last_name":"Bestenlehner","first_name":"J. M."},{"full_name":"Blomme, R.","last_name":"Blomme","first_name":"R."},{"last_name":"Bodensteiner","first_name":"J.","full_name":"Bodensteiner, J."},{"full_name":"Brands, S. A.","first_name":"S. A.","last_name":"Brands"},{"full_name":"Evans, C. J.","first_name":"C. J.","last_name":"Evans"},{"full_name":"David-Uraz, A.","first_name":"A.","last_name":"David-Uraz"},{"first_name":"F. A.","last_name":"Driessen","full_name":"Driessen, F. A."},{"first_name":"K.","last_name":"Dsilva","full_name":"Dsilva, K."},{"last_name":"Geen","first_name":"S.","full_name":"Geen, S."},{"last_name":"Gómez-González","first_name":"V. M. A.","full_name":"Gómez-González, V. M. A."},{"full_name":"Grassitelli, L.","first_name":"L.","last_name":"Grassitelli"},{"first_name":"W.-R.","last_name":"Hamann","full_name":"Hamann, W.-R."},{"full_name":"Hawcroft, C.","first_name":"C.","last_name":"Hawcroft"},{"first_name":"A.","last_name":"Herrero","full_name":"Herrero, A."},{"first_name":"E. R.","last_name":"Higgins","full_name":"Higgins, E. R."},{"full_name":"John Hillier, D.","first_name":"D.","last_name":"John Hillier"},{"full_name":"Ignace, R.","first_name":"R.","last_name":"Ignace"},{"last_name":"Istrate","first_name":"A. G.","full_name":"Istrate, A. G."},{"full_name":"Kaper, L.","first_name":"L.","last_name":"Kaper"},{"first_name":"N. D.","last_name":"Kee","full_name":"Kee, N. D."},{"first_name":"C.","last_name":"Kehrig","full_name":"Kehrig, C."},{"first_name":"Z.","last_name":"Keszthelyi","full_name":"Keszthelyi, Z."},{"last_name":"Klencki","first_name":"J.","full_name":"Klencki, J."},{"full_name":"de Koter, A.","last_name":"de Koter","first_name":"A."},{"first_name":"R.","last_name":"Kuiper","full_name":"Kuiper, R."},{"last_name":"Laplace","first_name":"E.","full_name":"Laplace, E."},{"first_name":"C. J. K.","last_name":"Larkin","full_name":"Larkin, C. J. K."},{"full_name":"Lefever, R. R.","first_name":"R. R.","last_name":"Lefever"},{"first_name":"C.","last_name":"Leitherer","full_name":"Leitherer, C."},{"full_name":"Lennon, D. J.","first_name":"D. J.","last_name":"Lennon"},{"first_name":"L.","last_name":"Mahy","full_name":"Mahy, L."},{"full_name":"Maíz Apellániz, J.","last_name":"Maíz Apellániz","first_name":"J."},{"first_name":"G.","last_name":"Maravelias","full_name":"Maravelias, G."},{"last_name":"Marcolino","first_name":"W.","full_name":"Marcolino, W."},{"first_name":"A. F.","last_name":"McLeod","full_name":"McLeod, A. F."},{"first_name":"S. E.","last_name":"de Mink","full_name":"de Mink, S. E."},{"full_name":"Najarro, F.","first_name":"F.","last_name":"Najarro"},{"full_name":"Oey, M. S.","first_name":"M. S.","last_name":"Oey"},{"last_name":"Parsons","first_name":"T. N.","full_name":"Parsons, T. N."},{"full_name":"Pauli, D.","first_name":"D.","last_name":"Pauli"},{"full_name":"Pedersen, M. G.","first_name":"M. G.","last_name":"Pedersen"},{"full_name":"Prinja, R. K.","first_name":"R. K.","last_name":"Prinja"},{"full_name":"Ramachandran, V.","last_name":"Ramachandran","first_name":"V."},{"last_name":"Ramírez-Tannus","first_name":"M. C.","full_name":"Ramírez-Tannus, M. C."},{"full_name":"Sabhahit, G. N.","first_name":"G. N.","last_name":"Sabhahit"},{"full_name":"Schootemeijer, A.","first_name":"A.","last_name":"Schootemeijer"},{"full_name":"Reyero Serantes, S.","last_name":"Reyero Serantes","first_name":"S."},{"last_name":"Shenar","first_name":"T.","full_name":"Shenar, T."},{"full_name":"Stringfellow, G. S.","first_name":"G. S.","last_name":"Stringfellow"},{"full_name":"Sudnik, N.","last_name":"Sudnik","first_name":"N."},{"last_name":"Tramper","first_name":"F.","full_name":"Tramper, F."},{"last_name":"Wang","first_name":"L.","full_name":"Wang, L."}]},{"license":"https://creativecommons.org/licenses/by-nc-sa/4.0/","file_date_updated":"2023-07-06T11:35:15Z","ec_funded":1,"date_updated":"2023-08-24T11:16:35Z","date_created":"2023-06-30T08:07:43Z","author":[{"id":"47D26E34-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6264-2162","first_name":"Rishabh","last_name":"Sahu","full_name":"Sahu, Rishabh"}],"related_material":{"record":[{"relation":"old_edition","status":"public","id":"12900"},{"status":"public","relation":"part_of_dissertation","id":"10924"},{"status":"public","relation":"part_of_dissertation","id":"9114"}]},"publication_status":"published","department":[{"_id":"GradSch"},{"_id":"JoFi"}],"publisher":"Institute of Science and Technology Austria","year":"2023","month":"05","publication_identifier":{"issn":["2663 - 337X"],"isbn":["978-3-99078-030-5"]},"supervisor":[{"first_name":"Johannes M","last_name":"Fink","id":"4B591CBA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8112-028X","full_name":"Fink, Johannes M"}],"acknowledged_ssus":[{"_id":"M-Shop"},{"_id":"SSU"},{"_id":"NanoFab"}],"degree_awarded":"PhD","language":[{"iso":"eng"}],"doi":"10.15479/at:ista:13175","project":[{"grant_number":"758053","_id":"26336814-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","name":"A Fiber Optic Transceiver for Superconducting Qubits"},{"grant_number":"899354","_id":"9B868D20-BA93-11EA-9121-9846C619BF3A","call_identifier":"H2020","name":"Quantum Local Area Networks with Superconducting Qubits"},{"name":"QUANTUM INFORMATION SYSTEMS BEYOND CLASSICAL CAPABILITIES / P5- Integration of Superconducting Quantum Circuits","_id":"bdb108fd-d553-11ed-ba76-83dc74a9864f"}],"tmp":{"name":"Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode","image":"/images/cc_by_nc_sa.png","short":"CC BY-NC-SA (4.0)"},"oa":1,"abstract":[{"text":"About a 100 years ago, we discovered that our universe is inherently noisy, that is, measuring any physical quantity with a precision beyond a certain point is not possible because of an omnipresent inherent noise. We call this - the quantum noise. Certain physical processes allow this quantum noise to get correlated in conjugate physical variables. These quantum correlations can be used to go beyond the potential of our inherently noisy universe and obtain a quantum advantage over the classical applications. \r\n\r\nQuantum noise being inherent also means that, at the fundamental level, the physical quantities are not well defined and therefore, objects can stay in multiple states at the same time. For example, the position of a particle not being well defined means that the particle is in multiple positions at the same time. About 4 decades ago, we started exploring the possibility of using objects which can be in multiple states at the same time to increase the dimensionality in computation. Thus, the field of quantum computing was born. We discovered that using quantum entanglement, a property closely related to quantum correlations, can be used to speed up computation of certain problems, such as factorisation of large numbers, faster than any known classical algorithm. Thus began the pursuit to make quantum computers a reality. \r\n\r\nTill date, we have explored quantum control over many physical systems including photons, spins, atoms, ions and even simple circuits made up of superconducting material. However, there persists one ubiquitous theme. The more readily a system interacts with an external field or matter, the more easily we can control it. But this also means that such a system can easily interact with a noisy environment and quickly lose its coherence. Consequently, such systems like electron spins need to be protected from the environment to ensure the longevity of their coherence. Other systems like nuclear spins are naturally protected as they do not interact easily with the environment. But, due to the same reason, it is harder to interact with such systems. \r\n\r\nAfter decades of experimentation with various systems, we are convinced that no one type of quantum system would be the best for all the quantum applications. We would need hybrid systems which are all interconnected - much like the current internet where all sorts of devices can all talk to each other - but now for quantum devices. A quantum internet. \r\n\r\nOptical photons are the best contenders to carry information for the quantum internet. They can carry quantum information cheaply and without much loss - the same reasons which has made them the backbone of our current internet. Following this direction, many systems, like trapped ions, have already demonstrated successful quantum links over a large distances using optical photons. However, some of the most promising contenders for quantum computing which are based on microwave frequencies have been left behind. This is because high energy optical photons can adversely affect fragile low-energy microwave systems. \r\n\r\nIn this thesis, we present substantial progress on this missing quantum link between microwave and optics using electrooptical nonlinearities in lithium niobate. The nonlinearities are enhanced by using resonant cavities for all the involved modes leading to observation of strong direct coupling between optical and microwave frequencies. With this strong coupling we are not only able to achieve almost 100\\% internal conversion efficiency with low added noise, thus presenting a quantum-enabled transducer, but also we are able to observe novel effects such as cooling of a microwave mode using optics. The strong coupling regime also leads to direct observation of dynamical backaction effect between microwave and optical frequencies which are studied in detail here. Finally, we also report first observation of microwave-optics entanglement in form of two-mode squeezed vacuum squeezed 0.7dB below vacuum level. \r\nWith this new bridge between microwave and optics, the microwave-based quantum technologies can finally be a part of a quantum network which is based on optical photons - putting us one step closer to a future with quantum internet. ","lang":"eng"}],"alternative_title":["ISTA Thesis"],"type":"dissertation","file":[{"file_size":18688376,"content_type":"application/pdf","creator":"cchlebak","access_level":"open_access","file_name":"thesis_pdfa.pdf","checksum":"7d03f1a5a5258ee43dfc3323dea4e08f","success":1,"date_updated":"2023-06-30T08:17:25Z","date_created":"2023-06-30T08:17:25Z","relation":"main_file","file_id":"13176"},{"content_type":"application/x-zip-compressed","file_size":37847025,"creator":"cchlebak","access_level":"closed","file_name":"thesis.zip","checksum":"c3b45317ae58e0527533f98c202d81b7","date_updated":"2023-07-06T11:35:15Z","date_created":"2023-07-06T11:35:15Z","relation":"source_file","file_id":"13196"}],"oa_version":"Published Version","ddc":["537","535","539"],"status":"public","title":"Cavity quantum electrooptics","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","_id":"13175","day":"05","has_accepted_license":"1","article_processing_charge":"No","keyword":["quantum optics","electrooptics","quantum networks","quantum communication","transduction"],"date_published":"2023-05-05T00:00:00Z","page":"202","citation":{"ama":"Sahu R. Cavity quantum electrooptics. 2023. doi:10.15479/at:ista:13175","ieee":"R. Sahu, “Cavity quantum electrooptics,” Institute of Science and Technology Austria, 2023.","apa":"Sahu, R. (2023). Cavity quantum electrooptics. Institute of Science and Technology Austria. https://doi.org/10.15479/at:ista:13175","ista":"Sahu R. 2023. Cavity quantum electrooptics. Institute of Science and Technology Austria.","short":"R. Sahu, Cavity Quantum Electrooptics, Institute of Science and Technology Austria, 2023.","mla":"Sahu, Rishabh. Cavity Quantum Electrooptics. 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Sahu, “Cavity quantum electrooptics,” Institute of Science and Technology Austria, 2023.","apa":"Sahu, R. (2023). Cavity quantum electrooptics. Institute of Science and Technology Austria. https://doi.org/10.15479/at:ista:12900","ama":"Sahu R. Cavity quantum electrooptics. 2023. doi:10.15479/at:ista:12900"},"date_published":"2023-05-05T00:00:00Z","alternative_title":["ISTA Thesis"],"type":"dissertation","abstract":[{"text":"About a 100 years ago, we discovered that our universe is inherently noisy, that is, measuring any physical quantity with a precision beyond a certain point is not possible because of an omnipresent inherent noise. We call this - the quantum noise. Certain physical processes allow this quantum noise to get correlated in conjugate physical variables. These quantum correlations can be used to go beyond the potential of our inherently noisy universe and obtain a quantum advantage over the classical applications. \r\n\r\nQuantum noise being inherent also means that, at the fundamental level, the physical quantities are not well defined and therefore, objects can stay in multiple states at the same time. For example, the position of a particle not being well defined means that the particle is in multiple positions at the same time. About 4 decades ago, we started exploring the possibility of using objects which can be in multiple states at the same time to increase the dimensionality in computation. Thus, the field of quantum computing was born. We discovered that using quantum entanglement, a property closely related to quantum correlations, can be used to speed up computation of certain problems, such as factorisation of large numbers, faster than any known classical algorithm. Thus began the pursuit to make quantum computers a reality. \r\n\r\nTill date, we have explored quantum control over many physical systems including photons, spins, atoms, ions and even simple circuits made up of superconducting material. However, there persists one ubiquitous theme. The more readily a system interacts with an external field or matter, the more easily we can control it. But this also means that such a system can easily interact with a noisy environment and quickly lose its coherence. Consequently, such systems like electron spins need to be protected from the environment to ensure the longevity of their coherence. Other systems like nuclear spins are naturally protected as they do not interact easily with the environment. But, due to the same reason, it is harder to interact with such systems. \r\n\r\nAfter decades of experimentation with various systems, we are convinced that no one type of quantum system would be the best for all the quantum applications. We would need hybrid systems which are all interconnected - much like the current internet where all sorts of devices can all talk to each other - but now for quantum devices. A quantum internet. \r\n\r\nOptical photons are the best contenders to carry information for the quantum internet. They can carry quantum information cheaply and without much loss - the same reasons which has made them the backbone of our current internet. Following this direction, many systems, like trapped ions, have already demonstrated successful quantum links over a large distances using optical photons. However, some of the most promising contenders for quantum computing which are based on microwave frequencies have been left behind. This is because high energy optical photons can adversely affect fragile low-energy microwave systems. \r\n\r\nIn this thesis, we present substantial progress on this missing quantum link between microwave and optics using electrooptical nonlinearities in lithium niobate. The nonlinearities are enhanced by using resonant cavities for all the involved modes leading to observation of strong direct coupling between optical and microwave frequencies. With this strong coupling we are not only able to achieve almost 100\\% internal conversion efficiency with low added noise, thus presenting a quantum-enabled transducer, but also we are able to observe novel effects such as cooling of a microwave mode using optics. The strong coupling regime also leads to direct observation of dynamical backaction effect between microwave and optical frequencies which are studied in detail here. Finally, we also report first observation of microwave-optics entanglement in form of two-mode squeezed vacuum squeezed 0.7dB below vacuum level. \r\nWith this new bridge between microwave and optics, the microwave-based quantum technologies can finally be a part of a quantum network which is based on optical photons - putting us one step closer to a future with quantum internet. ","lang":"eng"}],"title":"Cavity quantum electrooptics","status":"public","ddc":["537","535","539"],"_id":"12900","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","file":[{"date_updated":"2023-06-06T22:30:03Z","date_created":"2023-05-09T08:45:14Z","checksum":"8cbdab9c37ee55e591092a6f66b272c4","file_id":"12928","relation":"source_file","creator":"rsahu","content_type":"application/x-zip-compressed","file_size":36767177,"file_name":"thesis.zip","embargo_to":"open_access","access_level":"closed"},{"file_name":"thesis_pdfa_final.pdf","access_level":"closed","content_type":"application/pdf","file_size":17501990,"creator":"rsahu","relation":"main_file","file_id":"12929","date_updated":"2023-07-06T11:37:40Z","date_created":"2023-05-09T08:51:17Z","checksum":"439659ead46618147309be39d9dd5a8c"}],"oa_version":"Published Version","month":"05","publication_identifier":{"isbn":["978-3-99078-030-5"],"issn":["2663 - 337X"]},"project":[{"call_identifier":"H2020","name":"A Fiber Optic Transceiver for Superconducting Qubits","_id":"26336814-B435-11E9-9278-68D0E5697425","grant_number":"758053"},{"_id":"9B868D20-BA93-11EA-9121-9846C619BF3A","grant_number":"899354","call_identifier":"H2020","name":"Quantum Local Area Networks with Superconducting Qubits"},{"_id":"bdb108fd-d553-11ed-ba76-83dc74a9864f","name":"QUANTUM INFORMATION SYSTEMS BEYOND CLASSICAL CAPABILITIES / P5- Integration of Superconducting Quantum Circuits"}],"tmp":{"name":"Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode","image":"/images/cc_by_nc_sa.png","short":"CC BY-NC-SA (4.0)"},"degree_awarded":"PhD","supervisor":[{"first_name":"Johannes M","last_name":"Fink","id":"4B591CBA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8112-028X","full_name":"Fink, Johannes M"}],"acknowledged_ssus":[{"_id":"M-Shop"},{"_id":"SSU"},{"_id":"NanoFab"}],"language":[{"iso":"eng"}],"doi":"10.15479/at:ista:12900","file_date_updated":"2023-07-06T11:37:40Z","ec_funded":1,"publication_status":"published","department":[{"_id":"GradSch"},{"_id":"JoFi"}],"publisher":"Institute of Science and Technology Austria","year":"2023","date_created":"2023-05-05T11:08:50Z","date_updated":"2023-08-24T11:16:35Z","author":[{"full_name":"Sahu, Rishabh","first_name":"Rishabh","last_name":"Sahu","id":"47D26E34-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6264-2162"}],"related_material":{"record":[{"status":"public","relation":"new_edition","id":"13175"},{"id":"10924","relation":"part_of_dissertation","status":"public"},{"relation":"part_of_dissertation","status":"public","id":"9114"}]}},{"type":"conference","abstract":[{"text":"We study the problem of training and certifying adversarially robust quantized neural networks (QNNs). Quantization is a technique for making neural networks more efficient by running them using low-bit integer arithmetic and is therefore commonly adopted in industry. Recent work has shown that floating-point neural networks that have been verified to be robust can become vulnerable to adversarial attacks after quantization, and certification of the quantized representation is necessary to guarantee robustness. In this work, we present quantization-aware interval bound propagation (QA-IBP), a novel method for training robust QNNs. Inspired by advances in robust learning of non-quantized networks, our training algorithm computes the gradient of an abstract representation of the actual network. Unlike existing approaches, our method can handle the discrete semantics of QNNs. Based on QA-IBP, we also develop a complete verification procedure for verifying the adversarial robustness of QNNs, which is guaranteed to terminate and produce a correct answer. Compared to existing approaches, the key advantage of our verification procedure is that it runs entirely on GPU or other accelerator devices. We demonstrate experimentally that our approach significantly outperforms existing methods and establish the new state-of-the-art for training and certifying the robustness of QNNs.","lang":"eng"}],"issue":"12","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"14242","title":"Quantization-aware interval bound propagation for training certifiably robust quantized neural networks","status":"public","intvolume":" 37","oa_version":"Preprint","scopus_import":"1","day":"26","article_processing_charge":"No","publication":"Proceedings of the 37th AAAI Conference on Artificial Intelligence","citation":{"ama":"Lechner M, Zikelic D, Chatterjee K, Henzinger TA, Rus D. Quantization-aware interval bound propagation for training certifiably robust quantized neural networks. In: Proceedings of the 37th AAAI Conference on Artificial Intelligence. Vol 37. Association for the Advancement of Artificial Intelligence; 2023:14964-14973. doi:10.1609/aaai.v37i12.26747","apa":"Lechner, M., Zikelic, D., Chatterjee, K., Henzinger, T. A., & Rus, D. (2023). Quantization-aware interval bound propagation for training certifiably robust quantized neural networks. In Proceedings of the 37th AAAI Conference on Artificial Intelligence (Vol. 37, pp. 14964–14973). Washington, DC, United States: Association for the Advancement of Artificial Intelligence. https://doi.org/10.1609/aaai.v37i12.26747","ieee":"M. Lechner, D. Zikelic, K. Chatterjee, T. A. Henzinger, and D. Rus, “Quantization-aware interval bound propagation for training certifiably robust quantized neural networks,” in Proceedings of the 37th AAAI Conference on Artificial Intelligence, Washington, DC, United States, 2023, vol. 37, no. 12, pp. 14964–14973.","ista":"Lechner M, Zikelic D, Chatterjee K, Henzinger TA, Rus D. 2023. Quantization-aware interval bound propagation for training certifiably robust quantized neural networks. Proceedings of the 37th AAAI Conference on Artificial Intelligence. AAAI: Conference on Artificial Intelligence vol. 37, 14964–14973.","short":"M. Lechner, D. Zikelic, K. Chatterjee, T.A. Henzinger, D. Rus, in:, Proceedings of the 37th AAAI Conference on Artificial Intelligence, Association for the Advancement of Artificial Intelligence, 2023, pp. 14964–14973.","mla":"Lechner, Mathias, et al. “Quantization-Aware Interval Bound Propagation for Training Certifiably Robust Quantized Neural Networks.” Proceedings of the 37th AAAI Conference on Artificial Intelligence, vol. 37, no. 12, Association for the Advancement of Artificial Intelligence, 2023, pp. 14964–73, doi:10.1609/aaai.v37i12.26747.","chicago":"Lechner, Mathias, Dorde Zikelic, Krishnendu Chatterjee, Thomas A Henzinger, and Daniela Rus. “Quantization-Aware Interval Bound Propagation for Training Certifiably Robust Quantized Neural Networks.” In Proceedings of the 37th AAAI Conference on Artificial Intelligence, 37:14964–73. Association for the Advancement of Artificial Intelligence, 2023. https://doi.org/10.1609/aaai.v37i12.26747."},"page":"14964-14973","date_published":"2023-06-26T00:00:00Z","ec_funded":1,"acknowledgement":"This work was supported in part by the ERC-2020-AdG 101020093, ERC CoG 863818 (FoRM-SMArt) and the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 665385. Research was sponsored by the United\r\nStates Air Force Research Laboratory and the United States Air Force Artificial Intelligence Accelerator and was accomplished under Cooperative Agreement Number FA8750-19-2-\r\n1000. The views and conclusions contained in this document are those of the authors and should not be interpreted as representing the official policies, either expressed or implied,\r\nof the United States Air Force or the U.S. Government. The U.S. Government is authorized to reproduce and distribute reprints for Government purposes notwithstanding any copyright\r\nnotation herein. The research was also funded in part by the AI2050 program at Schmidt Futures (Grant G-22-63172) and Capgemini SE.","year":"2023","publication_status":"published","department":[{"_id":"ToHe"},{"_id":"KrCh"}],"publisher":"Association for the Advancement of Artificial Intelligence","author":[{"last_name":"Lechner","first_name":"Mathias","id":"3DC22916-F248-11E8-B48F-1D18A9856A87","full_name":"Lechner, Mathias"},{"last_name":"Zikelic","first_name":"Dorde","orcid":"0000-0002-4681-1699","id":"294AA7A6-F248-11E8-B48F-1D18A9856A87","full_name":"Zikelic, Dorde"},{"orcid":"0000-0002-4561-241X","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","last_name":"Chatterjee","first_name":"Krishnendu","full_name":"Chatterjee, Krishnendu"},{"full_name":"Henzinger, Thomas A","id":"40876CD8-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2985-7724","first_name":"Thomas A","last_name":"Henzinger"},{"first_name":"Daniela","last_name":"Rus","full_name":"Rus, Daniela"}],"date_updated":"2023-09-05T07:06:14Z","date_created":"2023-08-27T22:01:17Z","volume":37,"month":"06","publication_identifier":{"isbn":["9781577358800"]},"external_id":{"arxiv":["2211.16187"]},"oa":1,"main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2211.16187"}],"quality_controlled":"1","project":[{"name":"Vigilant Algorithmic Monitoring of Software","call_identifier":"H2020","grant_number":"101020093","_id":"62781420-2b32-11ec-9570-8d9b63373d4d"},{"grant_number":"863818","_id":"0599E47C-7A3F-11EA-A408-12923DDC885E","name":"Formal Methods for Stochastic Models: Algorithms and Applications","call_identifier":"H2020"},{"grant_number":"665385","_id":"2564DBCA-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","name":"International IST Doctoral Program"}],"conference":{"start_date":"2023-02-07","location":"Washington, DC, United States","end_date":"2023-02-14","name":"AAAI: Conference on Artificial Intelligence"},"doi":"10.1609/aaai.v37i12.26747","language":[{"iso":"eng"}]},{"volume":37,"date_created":"2023-08-27T22:01:18Z","date_updated":"2023-09-05T08:37:00Z","author":[{"full_name":"Avni, Guy","orcid":"0000-0001-5588-8287","id":"463C8BC2-F248-11E8-B48F-1D18A9856A87","last_name":"Avni","first_name":"Guy"},{"last_name":"Jecker","first_name":"Ismael R","id":"85D7C63E-7D5D-11E9-9C0F-98C4E5697425","full_name":"Jecker, Ismael R"},{"first_name":"Dorde","last_name":"Zikelic","id":"294AA7A6-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4681-1699","full_name":"Zikelic, Dorde"}],"department":[{"_id":"ToHe"},{"_id":"KrCh"}],"publication_status":"published","year":"2023","acknowledgement":"This research was supported in part by ISF grant no.1679/21, by the ERC CoG 863818 (ForM-SMArt), and the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 665385.","ec_funded":1,"language":[{"iso":"eng"}],"doi":"10.1609/aaai.v37i5.25679","conference":{"location":"Washington, DC, United States","start_date":"2023-02-07","end_date":"2023-02-14","name":"AAAI: Conference on Artificial Intelligence"},"project":[{"grant_number":"863818","_id":"0599E47C-7A3F-11EA-A408-12923DDC885E","call_identifier":"H2020","name":"Formal Methods for Stochastic Models: Algorithms and Applications"},{"name":"International IST Doctoral Program","call_identifier":"H2020","grant_number":"665385","_id":"2564DBCA-B435-11E9-9278-68D0E5697425"}],"quality_controlled":"1","main_file_link":[{"url":"https://doi.org/10.1609/aaai.v37i5.25679","open_access":"1"}],"external_id":{"arxiv":["2211.13626"]},"oa":1,"publication_identifier":{"isbn":["9781577358800"]},"month":"06","oa_version":"Published Version","intvolume":" 37","status":"public","title":"Bidding graph games with partially-observable budgets","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"14243","issue":"5","abstract":[{"text":"Two-player zero-sum \"graph games\" are central in logic, verification, and multi-agent systems. The game proceeds by placing a token on a vertex of a graph, and allowing the players to move it to produce an infinite path, which determines the winner or payoff of the game. Traditionally, the players alternate turns in moving the token. In \"bidding games\", however, the players have budgets and in each turn, an auction (bidding) determines which player moves the token. So far, bidding games have only been studied as full-information games. In this work we initiate the study of partial-information bidding games: we study bidding games in which a player's initial budget is drawn from a known probability distribution. We show that while for some bidding mechanisms and objectives, it is straightforward to adapt the results from the full-information setting to the partial-information setting, for others, the analysis is significantly more challenging, requires new techniques, and gives rise to interesting results. Specifically, we study games with \"mean-payoff\" objectives in combination with \"poorman\" bidding. We construct optimal strategies for a partially-informed player who plays against a fully-informed adversary. We show that, somewhat surprisingly, the \"value\" under pure strategies does not necessarily exist in such games.","lang":"eng"}],"type":"conference","date_published":"2023-06-27T00:00:00Z","page":"5464-5471","citation":{"ama":"Avni G, Jecker IR, Zikelic D. Bidding graph games with partially-observable budgets. In: Proceedings of the 37th AAAI Conference on Artificial Intelligence. Vol 37. ; 2023:5464-5471. doi:10.1609/aaai.v37i5.25679","ista":"Avni G, Jecker IR, Zikelic D. 2023. Bidding graph games with partially-observable budgets. Proceedings of the 37th AAAI Conference on Artificial Intelligence. AAAI: Conference on Artificial Intelligence vol. 37, 5464–5471.","ieee":"G. Avni, I. R. Jecker, and D. Zikelic, “Bidding graph games with partially-observable budgets,” in Proceedings of the 37th AAAI Conference on Artificial Intelligence, Washington, DC, United States, 2023, vol. 37, no. 5, pp. 5464–5471.","apa":"Avni, G., Jecker, I. R., & Zikelic, D. (2023). Bidding graph games with partially-observable budgets. In Proceedings of the 37th AAAI Conference on Artificial Intelligence (Vol. 37, pp. 5464–5471). Washington, DC, United States. https://doi.org/10.1609/aaai.v37i5.25679","mla":"Avni, Guy, et al. “Bidding Graph Games with Partially-Observable Budgets.” Proceedings of the 37th AAAI Conference on Artificial Intelligence, vol. 37, no. 5, 2023, pp. 5464–71, doi:10.1609/aaai.v37i5.25679.","short":"G. Avni, I.R. Jecker, D. Zikelic, in:, Proceedings of the 37th AAAI Conference on Artificial Intelligence, 2023, pp. 5464–5471.","chicago":"Avni, Guy, Ismael R Jecker, and Dorde Zikelic. “Bidding Graph Games with Partially-Observable Budgets.” In Proceedings of the 37th AAAI Conference on Artificial Intelligence, 37:5464–71, 2023. https://doi.org/10.1609/aaai.v37i5.25679."},"publication":"Proceedings of the 37th AAAI Conference on Artificial Intelligence","article_processing_charge":"No","day":"27","scopus_import":"1"},{"status":"public","title":"Stealth shaper: Reflectivity optimization as surface stylization","_id":"14241","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Preprint","type":"conference","abstract":[{"text":"We present a technique to optimize the reflectivity of a surface while preserving its overall shape. The naïve optimization of the mesh vertices using the gradients of reflectivity simulations results in undesirable distortion. In contrast, our robust formulation optimizes the surface normal as an independent variable that bridges the reflectivity term with differential rendering, and the regularization term with as-rigid-as-possible elastic energy. We further adaptively subdivide the input mesh to improve the convergence. Consequently, our method can minimize the retroreflectivity of a wide range of input shapes, resulting in sharply creased shapes ubiquitous among stealth aircraft and Sci-Fi vehicles. Furthermore, by changing the reward for the direction of the outgoing light directions, our method can be applied to other reflectivity design tasks, such as the optimization of architectural walls to concentrate light in a specific region. We have tested the proposed method using light-transport simulations and real-world 3D-printed objects.","lang":"eng"}],"publication":"SIGGRAPH 2023 Conference Proceedings","citation":{"ista":"Tojo K, Shamir A, Bickel B, Umetani N. 2023. Stealth shaper: Reflectivity optimization as surface stylization. SIGGRAPH 2023 Conference Proceedings. SIGGRAPH: Computer Graphics and Interactive Techniques Conference, 20.","ieee":"K. Tojo, A. Shamir, B. Bickel, and N. Umetani, “Stealth shaper: Reflectivity optimization as surface stylization,” in SIGGRAPH 2023 Conference Proceedings, Los Angeles, CA, United States, 2023.","apa":"Tojo, K., Shamir, A., Bickel, B., & Umetani, N. (2023). Stealth shaper: Reflectivity optimization as surface stylization. In SIGGRAPH 2023 Conference Proceedings. Los Angeles, CA, United States: Association for Computing Machinery. https://doi.org/10.1145/3588432.3591542","ama":"Tojo K, Shamir A, Bickel B, Umetani N. Stealth shaper: Reflectivity optimization as surface stylization. In: SIGGRAPH 2023 Conference Proceedings. Association for Computing Machinery; 2023. doi:10.1145/3588432.3591542","chicago":"Tojo, Kenji, Ariel Shamir, Bernd Bickel, and Nobuyuki Umetani. “Stealth Shaper: Reflectivity Optimization as Surface Stylization.” In SIGGRAPH 2023 Conference Proceedings. Association for Computing Machinery, 2023. https://doi.org/10.1145/3588432.3591542.","mla":"Tojo, Kenji, et al. “Stealth Shaper: Reflectivity Optimization as Surface Stylization.” SIGGRAPH 2023 Conference Proceedings, 20, Association for Computing Machinery, 2023, doi:10.1145/3588432.3591542.","short":"K. Tojo, A. Shamir, B. Bickel, N. Umetani, in:, SIGGRAPH 2023 Conference Proceedings, Association for Computing Machinery, 2023."},"date_published":"2023-07-23T00:00:00Z","scopus_import":"1","day":"23","article_processing_charge":"No","publication_status":"published","department":[{"_id":"BeBi"}],"publisher":"Association for Computing Machinery","year":"2023","acknowledgement":"The authors would like to thank Yuki Koyama and Takeo Igarashi for early discussions, and Yuta Yaguchi for support in 3D printing. This research is partially supported by the Israel Science Foundation grant number 1390/19.\r\n","date_updated":"2023-09-05T07:22:03Z","date_created":"2023-08-27T22:01:17Z","author":[{"last_name":"Tojo","first_name":"Kenji","full_name":"Tojo, Kenji"},{"first_name":"Ariel","last_name":"Shamir","full_name":"Shamir, Ariel"},{"full_name":"Bickel, Bernd","id":"49876194-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6511-9385","first_name":"Bernd","last_name":"Bickel"},{"full_name":"Umetani, Nobuyuki","last_name":"Umetani","first_name":"Nobuyuki"}],"article_number":"20","quality_controlled":"1","main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2305.05944","open_access":"1"}],"external_id":{"arxiv":["2305.05944"]},"oa":1,"language":[{"iso":"eng"}],"conference":{"end_date":"2023-08-10","start_date":"2023-08-06","location":"Los Angeles, CA, United States","name":"SIGGRAPH: Computer Graphics and Interactive Techniques Conference"},"doi":"10.1145/3588432.3591542","month":"07","publication_identifier":{"isbn":["9798400701597"]}},{"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","_id":"12562","intvolume":" 129","title":"Loss of ETV1/ER81 in motor neurons leads to reduced monosynaptic inputs from proprioceptive sensory neurons","status":"public","oa_version":"None","type":"journal_article","issue":"3","abstract":[{"lang":"eng","text":"Presynaptic inputs determine the pattern of activation of postsynaptic neurons in a neural circuit. Molecular and genetic pathways that regulate the selective formation of subsets of presynaptic inputs are largely unknown, despite significant understanding of the general process of synaptogenesis. In this study, we have begun to identify such factors using the spinal monosynaptic stretch reflex circuit as a model system. In this neuronal circuit, Ia proprioceptive afferents establish monosynaptic connections with spinal motor neurons that project to the same muscle (termed homonymous connections) or muscles with related or synergistic function. However, monosynaptic connections are not formed with motor neurons innervating muscles with antagonistic functions. The ETS transcription factor ER81 (also known as ETV1) is expressed by all proprioceptive afferents, but only a small set of motor neuron pools in the lumbar spinal cord of the mouse. Here we use conditional mouse genetic techniques to eliminate Er81 expression selectively from motor neurons. We find that ablation of Er81 in motor neurons reduces synaptic inputs from proprioceptive afferents conveying information from homonymous and synergistic muscles, with no change observed in the connectivity pattern from antagonistic proprioceptive afferents. In summary, these findings suggest a role for ER81 in defined motor neuron pools to control the assembly of specific presynaptic inputs and thereby influence the profile of activation of these motor neurons."}],"citation":{"chicago":"Ladle, David R., and Simon Hippenmeyer. “Loss of ETV1/ER81 in Motor Neurons Leads to Reduced Monosynaptic Inputs from Proprioceptive Sensory Neurons.” Journal of Neurophysiology. American Physiological Society, 2023. https://doi.org/10.1152/jn.00172.2022.","short":"D.R. Ladle, S. Hippenmeyer, Journal of Neurophysiology 129 (2023) 501–512.","mla":"Ladle, David R., and Simon Hippenmeyer. “Loss of ETV1/ER81 in Motor Neurons Leads to Reduced Monosynaptic Inputs from Proprioceptive Sensory Neurons.” Journal of Neurophysiology, vol. 129, no. 3, American Physiological Society, 2023, pp. 501–12, doi:10.1152/jn.00172.2022.","ieee":"D. R. Ladle and S. Hippenmeyer, “Loss of ETV1/ER81 in motor neurons leads to reduced monosynaptic inputs from proprioceptive sensory neurons,” Journal of Neurophysiology, vol. 129, no. 3. American Physiological Society, pp. 501–512, 2023.","apa":"Ladle, D. R., & Hippenmeyer, S. (2023). Loss of ETV1/ER81 in motor neurons leads to reduced monosynaptic inputs from proprioceptive sensory neurons. Journal of Neurophysiology. American Physiological Society. https://doi.org/10.1152/jn.00172.2022","ista":"Ladle DR, Hippenmeyer S. 2023. Loss of ETV1/ER81 in motor neurons leads to reduced monosynaptic inputs from proprioceptive sensory neurons. Journal of Neurophysiology. 129(3), 501–512.","ama":"Ladle DR, Hippenmeyer S. Loss of ETV1/ER81 in motor neurons leads to reduced monosynaptic inputs from proprioceptive sensory neurons. Journal of Neurophysiology. 2023;129(3):501-512. doi:10.1152/jn.00172.2022"},"publication":"Journal of Neurophysiology","page":"501-512","article_type":"original","date_published":"2023-03-01T00:00:00Z","keyword":["Physiology","General Neuroscience"],"article_processing_charge":"No","day":"01","pmid":1,"acknowledgement":"The authors gratefully thank Dr. Silvia Arber, University of Basel and Friedrich Miescher Institute for Biomedical Research, for support and in whose lab the data were collected. For advice on statistical analysis, we thank Michael Bottomley from the Statistical Consulting Center, College of Science and Mathematics, Wright State University.","year":"2023","publisher":"American Physiological Society","department":[{"_id":"SiHi"}],"publication_status":"published","author":[{"last_name":"Ladle","first_name":"David R.","full_name":"Ladle, David R."},{"full_name":"Hippenmeyer, Simon","id":"37B36620-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-2279-1061","first_name":"Simon","last_name":"Hippenmeyer"}],"volume":129,"date_created":"2023-02-15T14:46:14Z","date_updated":"2023-09-05T12:13:34Z","external_id":{"isi":["000957721600001"],"pmid":["36695533"]},"isi":1,"quality_controlled":"1","doi":"10.1152/jn.00172.2022","language":[{"iso":"eng"}],"publication_identifier":{"issn":["0022-3077"],"eissn":["1522-1598"]},"month":"03"},{"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"arxiv":["2305.15979"]},"oa":1,"project":[{"grant_number":"101020093","_id":"62781420-2b32-11ec-9570-8d9b63373d4d","call_identifier":"H2020","name":"Vigilant Algorithmic Monitoring of Software"}],"quality_controlled":"1","doi":"10.1007/978-3-031-37703-7_17","conference":{"name":"CAV: Computer Aided Verification","location":"Paris, France","start_date":"2023-07-17","end_date":"2023-07-22"},"language":[{"iso":"eng"}],"publication_identifier":{"eisbn":["9783031377037"],"issn":["0302-9743"],"eissn":["1611-3349"],"isbn":["9783031377020"]},"month":"07","year":"2023","acknowledgement":"This work is supported by the European Research Council under Grant No.: ERC-2020-AdG101020093.","publisher":"Springer Nature","department":[{"_id":"GradSch"},{"_id":"ToHe"}],"publication_status":"published","author":[{"first_name":"Thomas A","last_name":"Henzinger","id":"40876CD8-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2985-7724","full_name":"Henzinger, Thomas A"},{"first_name":"Mahyar","last_name":"Karimi","id":"f1dedef5-2f78-11ee-989a-c4c97bccf506","orcid":"0009-0005-0820-1696","full_name":"Karimi, Mahyar"},{"first_name":"Konstantin","last_name":"Kueffner","id":"8121a2d0-dc85-11ea-9058-af578f3b4515","orcid":"0000-0001-8974-2542","full_name":"Kueffner, Konstantin"},{"orcid":"0000-0001-9864-7475","id":"0834ff3c-6d72-11ec-94e0-b5b0a4fb8598","last_name":"Mallik","first_name":"Kaushik","full_name":"Mallik, Kaushik"}],"volume":13965,"date_created":"2023-07-25T18:32:40Z","date_updated":"2023-09-05T15:14:00Z","ec_funded":1,"file_date_updated":"2023-07-31T08:11:20Z","license":"https://creativecommons.org/licenses/by/4.0/","citation":{"chicago":"Henzinger, Thomas A, Mahyar Karimi, Konstantin Kueffner, and Kaushik Mallik. “Monitoring Algorithmic Fairness.” In Computer Aided Verification, 13965:358–382. Springer Nature, 2023. https://doi.org/10.1007/978-3-031-37703-7_17.","mla":"Henzinger, Thomas A., et al. “Monitoring Algorithmic Fairness.” Computer Aided Verification, vol. 13965, Springer Nature, 2023, pp. 358–382, doi:10.1007/978-3-031-37703-7_17.","short":"T.A. Henzinger, M. Karimi, K. Kueffner, K. Mallik, in:, Computer Aided Verification, Springer Nature, 2023, pp. 358–382.","ista":"Henzinger TA, Karimi M, Kueffner K, Mallik K. 2023. Monitoring algorithmic fairness. Computer Aided Verification. CAV: Computer Aided Verification, LNCS, vol. 13965, 358–382.","ieee":"T. A. Henzinger, M. Karimi, K. Kueffner, and K. Mallik, “Monitoring algorithmic fairness,” in Computer Aided Verification, Paris, France, 2023, vol. 13965, pp. 358–382.","apa":"Henzinger, T. A., Karimi, M., Kueffner, K., & Mallik, K. (2023). Monitoring algorithmic fairness. In Computer Aided Verification (Vol. 13965, pp. 358–382). Paris, France: Springer Nature. https://doi.org/10.1007/978-3-031-37703-7_17","ama":"Henzinger TA, Karimi M, Kueffner K, Mallik K. Monitoring algorithmic fairness. In: Computer Aided Verification. Vol 13965. Springer Nature; 2023:358–382. doi:10.1007/978-3-031-37703-7_17"},"publication":"Computer Aided Verification","page":"358–382","date_published":"2023-07-18T00:00:00Z","article_processing_charge":"Yes (in subscription journal)","has_accepted_license":"1","day":"18","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","_id":"13310","intvolume":" 13965","status":"public","ddc":["000"],"title":"Monitoring algorithmic fairness","oa_version":"Published Version","file":[{"relation":"main_file","file_id":"13327","checksum":"ccaf94bf7d658ba012c016e11869b54c","success":1,"date_created":"2023-07-31T08:11:20Z","date_updated":"2023-07-31T08:11:20Z","access_level":"open_access","file_name":"2023_LNCS_CAV_HenzingerT.pdf","content_type":"application/pdf","file_size":647760,"creator":"dernst"}],"type":"conference","alternative_title":["LNCS"],"abstract":[{"lang":"eng","text":"Machine-learned systems are in widespread use for making decisions about humans, and it is important that they are fair, i.e., not biased against individuals based on sensitive attributes. We present runtime verification of algorithmic fairness for systems whose models are unknown, but are assumed to have a Markov chain structure. We introduce a specification language that can model many common algorithmic fairness properties, such as demographic parity, equal opportunity, and social burden. We build monitors that observe a long sequence of events as generated by a given system, and output, after each observation, a quantitative estimate of how fair or biased the system was on that run until that point in time. The estimate is proven to be correct modulo a variable error bound and a given confidence level, where the error bound gets tighter as the observed sequence gets longer. Our monitors are of two types, and use, respectively, frequentist and Bayesian statistical inference techniques. While the frequentist monitors compute estimates that are objectively correct with respect to the ground truth, the Bayesian monitors compute estimates that are correct subject to a given prior belief about the system’s model. Using a prototype implementation, we show how we can monitor if a bank is fair in giving loans to applicants from different social backgrounds, and if a college is fair in admitting students while maintaining a reasonable financial burden on the society. Although they exhibit different theoretical complexities in certain cases, in our experiments, both frequentist and Bayesian monitors took less than a millisecond to update their verdicts after each observation."}]},{"doi":"10.1245/s10434-022-12459-3","language":[{"iso":"eng"}],"oa":1,"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"isi":["000852125500006"]},"isi":1,"quality_controlled":"1","month":"01","publication_identifier":{"issn":["1068-9265"],"eissn":["1534-4681"]},"author":[{"full_name":"Glajzer, Jacek","last_name":"Glajzer","first_name":"Jacek"},{"full_name":"Castillo-Tong, Dan Cacsire","first_name":"Dan Cacsire","last_name":"Castillo-Tong"},{"first_name":"Rolf","last_name":"Richter","full_name":"Richter, Rolf"},{"full_name":"Vergote, Ignace","first_name":"Ignace","last_name":"Vergote"},{"first_name":"Hagen","last_name":"Kulbe","full_name":"Kulbe, Hagen"},{"first_name":"Adriaan","last_name":"Vanderstichele","full_name":"Vanderstichele, Adriaan"},{"full_name":"Ruscito, Ilary","last_name":"Ruscito","first_name":"Ilary"},{"full_name":"Trillsch, Fabian","last_name":"Trillsch","first_name":"Fabian"},{"full_name":"Mustea, Alexander","first_name":"Alexander","last_name":"Mustea"},{"full_name":"Kreuzinger, Caroline","last_name":"Kreuzinger","first_name":"Caroline","id":"382077BA-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Charlie","last_name":"Gourley","full_name":"Gourley, Charlie"},{"last_name":"Gabra","first_name":"Hani","full_name":"Gabra, Hani"},{"first_name":"Eliane T.","last_name":"Taube","full_name":"Taube, Eliane T."},{"full_name":"Dorigo, Oliver","last_name":"Dorigo","first_name":"Oliver"},{"full_name":"Horst, David","first_name":"David","last_name":"Horst"},{"last_name":"Keunecke","first_name":"Carlotta","full_name":"Keunecke, Carlotta"},{"last_name":"Baum","first_name":"Joanna","full_name":"Baum, Joanna"},{"first_name":"Timothy","last_name":"Angelotti","full_name":"Angelotti, Timothy"},{"full_name":"Sehouli, Jalid","first_name":"Jalid","last_name":"Sehouli"},{"last_name":"Braicu","first_name":"Elena Ioana","full_name":"Braicu, Elena Ioana"}],"related_material":{"record":[{"relation":"other","status":"public","id":"12115"}]},"date_created":"2023-01-16T09:44:36Z","date_updated":"2023-09-05T15:18:37Z","volume":30,"acknowledgement":"E.I.B. is a Feodor Lynen fellow of the Humboldt Foundation and a participant of the Charité Clinical Scientist Program funded by the Charité Universitätsmedizin Berlin and the Berlin Institute of Health. This work was supported by European Commission’s Seventh Framework Programme under grant agreement no. 279113 (OCTIPS; www.octips.eu).\r\nOpen Access funding enabled and organized by Projekt DEAL.","year":"2023","publication_status":"published","department":[{"_id":"JoDa"}],"publisher":"Springer Nature","file_date_updated":"2023-02-02T13:01:20Z","date_published":"2023-01-01T00:00:00Z","publication":"Annals of Surgical Oncology","citation":{"mla":"Glajzer, Jacek, et al. “Impact of BRCA Mutation Status on Tumor Dissemination Pattern, Surgical Outcome and Patient Survival in Primary and Recurrent High-Grade Serous Ovarian Cancer: A Multicenter Retrospective Study by the Ovarian Cancer Therapy-Innovative Models Prolong Survival (OCTIPS) Consortium.” Annals of Surgical Oncology, vol. 30, Springer Nature, 2023, pp. 35–45, doi:10.1245/s10434-022-12459-3.","short":"J. Glajzer, D.C. Castillo-Tong, R. Richter, I. Vergote, H. Kulbe, A. Vanderstichele, I. Ruscito, F. Trillsch, A. Mustea, C. Kreuzinger, C. Gourley, H. Gabra, E.T. Taube, O. Dorigo, D. Horst, C. Keunecke, J. Baum, T. Angelotti, J. Sehouli, E.I. Braicu, Annals of Surgical Oncology 30 (2023) 35–45.","chicago":"Glajzer, Jacek, Dan Cacsire Castillo-Tong, Rolf Richter, Ignace Vergote, Hagen Kulbe, Adriaan Vanderstichele, Ilary Ruscito, et al. “Impact of BRCA Mutation Status on Tumor Dissemination Pattern, Surgical Outcome and Patient Survival in Primary and Recurrent High-Grade Serous Ovarian Cancer: A Multicenter Retrospective Study by the Ovarian Cancer Therapy-Innovative Models Prolong Survival (OCTIPS) Consortium.” Annals of Surgical Oncology. Springer Nature, 2023. https://doi.org/10.1245/s10434-022-12459-3.","ama":"Glajzer J, Castillo-Tong DC, Richter R, et al. Impact of BRCA mutation status on tumor dissemination pattern, surgical outcome and patient survival in primary and recurrent high-grade serous ovarian cancer: A multicenter retrospective study by the Ovarian Cancer Therapy-Innovative Models Prolong Survival (OCTIPS) consortium. Annals of Surgical Oncology. 2023;30:35-45. doi:10.1245/s10434-022-12459-3","ista":"Glajzer J, Castillo-Tong DC, Richter R, Vergote I, Kulbe H, Vanderstichele A, Ruscito I, Trillsch F, Mustea A, Kreuzinger C, Gourley C, Gabra H, Taube ET, Dorigo O, Horst D, Keunecke C, Baum J, Angelotti T, Sehouli J, Braicu EI. 2023. Impact of BRCA mutation status on tumor dissemination pattern, surgical outcome and patient survival in primary and recurrent high-grade serous ovarian cancer: A multicenter retrospective study by the Ovarian Cancer Therapy-Innovative Models Prolong Survival (OCTIPS) consortium. Annals of Surgical Oncology. 30, 35–45.","ieee":"J. Glajzer et al., “Impact of BRCA mutation status on tumor dissemination pattern, surgical outcome and patient survival in primary and recurrent high-grade serous ovarian cancer: A multicenter retrospective study by the Ovarian Cancer Therapy-Innovative Models Prolong Survival (OCTIPS) consortium,” Annals of Surgical Oncology, vol. 30. Springer Nature, pp. 35–45, 2023.","apa":"Glajzer, J., Castillo-Tong, D. C., Richter, R., Vergote, I., Kulbe, H., Vanderstichele, A., … Braicu, E. I. (2023). Impact of BRCA mutation status on tumor dissemination pattern, surgical outcome and patient survival in primary and recurrent high-grade serous ovarian cancer: A multicenter retrospective study by the Ovarian Cancer Therapy-Innovative Models Prolong Survival (OCTIPS) consortium. Annals of Surgical Oncology. Springer Nature. https://doi.org/10.1245/s10434-022-12459-3"},"article_type":"original","page":"35-45","day":"01","article_processing_charge":"No","has_accepted_license":"1","scopus_import":"1","keyword":["Oncology","Surgery"],"oa_version":"Published Version","file":[{"file_name":"2023_AnnalsSurgicalOncology_Glajzer.pdf","access_level":"open_access","file_size":365865,"content_type":"application/pdf","creator":"dernst","relation":"main_file","file_id":"12490","date_updated":"2023-02-02T13:01:20Z","date_created":"2023-02-02T13:01:20Z","checksum":"36a1200e1011f4b2155a8041d0308f34","success":1}],"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","_id":"12205","title":"Impact of BRCA mutation status on tumor dissemination pattern, surgical outcome and patient survival in primary and recurrent high-grade serous ovarian cancer: A multicenter retrospective study by the Ovarian Cancer Therapy-Innovative Models Prolong Survival (OCTIPS) consortium","status":"public","ddc":["610"],"intvolume":" 30","abstract":[{"lang":"eng","text":"Background: This study seeks to evaluate the impact of breast cancer (BRCA) gene status on tumor dissemination pattern, surgical outcome and survival in a multicenter cohort of paired primary ovarian cancer (pOC) and recurrent ovarian cancer (rOC).\r\n\r\nPatients and Methods: Medical records and follow-up data from 190 patients were gathered retrospectively. All patients had surgery at pOC and at least one further rOC surgery at four European high-volume centers. Patients were divided into one cohort with confirmed mutation for BRCA1 and/or BRCA2 (BRCAmut) and a second cohort with BRCA wild type or unknown (BRCAwt). Patterns of tumor presentation, surgical outcome and survival data were analyzed between the two groups.\r\n\r\nResults: Patients with BRCAmut disease were on average 4 years younger and had significantly more tumor involvement upon diagnosis. Patients with BRCAmut disease showed higher debulking rates at all stages. Multivariate analysis showed that only patient age had significant predictive value for complete tumor resection in pOC. At rOC, however, only BRCAmut status significantly correlated with optimal debulking. Patients with BRCAmut disease showed significantly prolonged overall survival (OS) by 24.3 months. Progression-free survival (PFS) was prolonged in the BRCAmut group at all stages as well, reaching statistical significance during recurrence.\r\n\r\nConclusions: Patients with BRCAmut disease showed a more aggressive course of disease with earlier onset and more extensive tumor dissemination at pOC. However, surgical outcome and OS were significantly better in patients with BRCAmut disease compared with patients with BRCAwt disease. We therefore propose to consider BRCAmut status in regard to patient selection for cytoreductive surgery, especially in rOC."}],"type":"journal_article"},{"article_processing_charge":"No","day":"01","keyword":["Oncology","Surgery"],"scopus_import":"1","date_published":"2023-01-01T00:00:00Z","page":"46-47","article_type":"original","citation":{"ama":"Glajzer J, Castillo-Tong DC, Richter R, et al. ASO Visual Abstract: Impact of BRCA mutation status on tumor dissemination pattern, surgical outcome, and patient survival in primary and recurrent high-grade serous ovarian cancer (HGSOC). A multicenter, retrospective study of the ovarian cancer therapy—innovative models prolong survival (OCTIPS) consortium. Annals of Surgical Oncology. 2023;30:46-47. doi:10.1245/s10434-022-12681-z","ieee":"J. Glajzer et al., “ASO Visual Abstract: Impact of BRCA mutation status on tumor dissemination pattern, surgical outcome, and patient survival in primary and recurrent high-grade serous ovarian cancer (HGSOC). A multicenter, retrospective study of the ovarian cancer therapy—innovative models prolong survival (OCTIPS) consortium,” Annals of Surgical Oncology, vol. 30. Springer Nature, pp. 46–47, 2023.","apa":"Glajzer, J., Castillo-Tong, D. C., Richter, R., Vergote, I., Kulbe, H., Vanderstichele, A., … Braicu, E. I. (2023). ASO Visual Abstract: Impact of BRCA mutation status on tumor dissemination pattern, surgical outcome, and patient survival in primary and recurrent high-grade serous ovarian cancer (HGSOC). A multicenter, retrospective study of the ovarian cancer therapy—innovative models prolong survival (OCTIPS) consortium. Annals of Surgical Oncology. Springer Nature. https://doi.org/10.1245/s10434-022-12681-z","ista":"Glajzer J, Castillo-Tong DC, Richter R, Vergote I, Kulbe H, Vanderstichele A, Ruscito I, Trillsch F, Mustea A, Kreuzinger C, Gourley C, Gabra H, Taube ET, Dorigo O, Horst D, Keunecke C, Baum J, Angelotti T, Sehouli J, Braicu EI. 2023. ASO Visual Abstract: Impact of BRCA mutation status on tumor dissemination pattern, surgical outcome, and patient survival in primary and recurrent high-grade serous ovarian cancer (HGSOC). A multicenter, retrospective study of the ovarian cancer therapy—innovative models prolong survival (OCTIPS) consortium. Annals of Surgical Oncology. 30, 46–47.","short":"J. Glajzer, D.C. Castillo-Tong, R. Richter, I. Vergote, H. Kulbe, A. Vanderstichele, I. Ruscito, F. Trillsch, A. Mustea, C. Kreuzinger, C. Gourley, H. Gabra, E.T. Taube, O. Dorigo, D. Horst, C. Keunecke, J. Baum, T. Angelotti, J. Sehouli, E.I. Braicu, Annals of Surgical Oncology 30 (2023) 46–47.","mla":"Glajzer, Jacek, et al. “ASO Visual Abstract: Impact of BRCA Mutation Status on Tumor Dissemination Pattern, Surgical Outcome, and Patient Survival in Primary and Recurrent High-Grade Serous Ovarian Cancer (HGSOC). A Multicenter, Retrospective Study of the Ovarian Cancer Therapy—Innovative Models Prolong Survival (OCTIPS) Consortium.” Annals of Surgical Oncology, vol. 30, Springer Nature, 2023, pp. 46–47, doi:10.1245/s10434-022-12681-z.","chicago":"Glajzer, Jacek, Dan Cacsire Castillo-Tong, Rolf Richter, Ignace Vergote, Hagen Kulbe, Adriaan Vanderstichele, Ilary Ruscito, et al. “ASO Visual Abstract: Impact of BRCA Mutation Status on Tumor Dissemination Pattern, Surgical Outcome, and Patient Survival in Primary and Recurrent High-Grade Serous Ovarian Cancer (HGSOC). A Multicenter, Retrospective Study of the Ovarian Cancer Therapy—Innovative Models Prolong Survival (OCTIPS) Consortium.” Annals of Surgical Oncology. Springer Nature, 2023. https://doi.org/10.1245/s10434-022-12681-z."},"publication":"Annals of Surgical Oncology","type":"journal_article","oa_version":"Published Version","intvolume":" 30","status":"public","title":"ASO Visual Abstract: Impact of BRCA mutation status on tumor dissemination pattern, surgical outcome, and patient survival in primary and recurrent high-grade serous ovarian cancer (HGSOC). A multicenter, retrospective study of the ovarian cancer therapy—innovative models prolong survival (OCTIPS) consortium","_id":"12115","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","publication_identifier":{"eissn":["1534-4681"],"issn":["1068-9265"]},"month":"01","language":[{"iso":"eng"}],"doi":"10.1245/s10434-022-12681-z","isi":1,"quality_controlled":"1","external_id":{"isi":["000879151800001"]},"main_file_link":[{"url":"https://doi.org/10.1245/s10434-022-12681-z","open_access":"1"}],"oa":1,"volume":30,"date_created":"2023-01-12T11:56:22Z","date_updated":"2023-09-05T15:18:36Z","related_material":{"record":[{"status":"public","relation":"other","id":"12205"}]},"author":[{"full_name":"Glajzer, Jacek","first_name":"Jacek","last_name":"Glajzer"},{"first_name":"Dan Cacsire","last_name":"Castillo-Tong","full_name":"Castillo-Tong, Dan Cacsire"},{"last_name":"Richter","first_name":"Rolf","full_name":"Richter, Rolf"},{"full_name":"Vergote, Ignace","last_name":"Vergote","first_name":"Ignace"},{"full_name":"Kulbe, Hagen","first_name":"Hagen","last_name":"Kulbe"},{"full_name":"Vanderstichele, Adriaan","last_name":"Vanderstichele","first_name":"Adriaan"},{"full_name":"Ruscito, Ilary","first_name":"Ilary","last_name":"Ruscito"},{"full_name":"Trillsch, Fabian","last_name":"Trillsch","first_name":"Fabian"},{"first_name":"Alexander","last_name":"Mustea","full_name":"Mustea, Alexander"},{"id":"382077BA-F248-11E8-B48F-1D18A9856A87","first_name":"Caroline","last_name":"Kreuzinger","full_name":"Kreuzinger, Caroline"},{"last_name":"Gourley","first_name":"Charlie","full_name":"Gourley, Charlie"},{"last_name":"Gabra","first_name":"Hani","full_name":"Gabra, Hani"},{"first_name":"Eliane T.","last_name":"Taube","full_name":"Taube, Eliane T."},{"first_name":"Oliver","last_name":"Dorigo","full_name":"Dorigo, Oliver"},{"first_name":"David","last_name":"Horst","full_name":"Horst, David"},{"first_name":"Carlotta","last_name":"Keunecke","full_name":"Keunecke, Carlotta"},{"first_name":"Joanna","last_name":"Baum","full_name":"Baum, Joanna"},{"full_name":"Angelotti, Timothy","first_name":"Timothy","last_name":"Angelotti"},{"last_name":"Sehouli","first_name":"Jalid","full_name":"Sehouli, Jalid"},{"full_name":"Braicu, Elena Ioana","last_name":"Braicu","first_name":"Elena Ioana"}],"department":[{"_id":"JoDa"}],"publisher":"Springer Nature","publication_status":"published","acknowledgement":"This work was supported by European Commission’s Seventh Framework Programme under Grant Agreement No. 279113 (OCTIPS; www.octips.eu).","year":"2023"},{"publication_identifier":{"eissn":["2041-1723"]},"month":"08","quality_controlled":"1","oa":1,"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"pmid":["37633939"]},"language":[{"iso":"eng"}],"doi":"10.1038/s41467-023-40930-6","article_number":"5231","file_date_updated":"2023-09-06T06:50:07Z","department":[{"_id":"RySh"}],"publisher":"Springer Nature","publication_status":"published","pmid":1,"acknowledgement":"We thank Kayla Templeton and Peter Turcanu for technical assistance, Michelle Salemi for assistance with LC-MS data acquisition and analysis, Dr. Belvin Gong for advice on monoclonal antibody generation, Drs. Maria Casas Prat and Eamonn Dickson for assistance with super-resolution TIRF microscopy, Dr. Oscar Cerda for assistance with the design of TAT-FFAT peptides, Dr. Fernando Santana for helpful discussions, and Dr. Jodi Nunnari for a careful reading of our manuscript. We also thank Dr. Alan Howe, Dr. Sohum Mehta, and Dr. Jin Zhang for providing plasmids used in this study. This project was funded by NIH Grants R01NS114210 and R21NS101648 (J.S.T.), and F32NS108519 (N.C.V.).","year":"2023","volume":14,"date_created":"2023-09-03T22:01:14Z","date_updated":"2023-09-06T06:53:32Z","author":[{"last_name":"Vierra","first_name":"Nicholas C.","full_name":"Vierra, Nicholas C."},{"full_name":"Ribeiro-Silva, Luisa","last_name":"Ribeiro-Silva","first_name":"Luisa"},{"first_name":"Michael","last_name":"Kirmiz","full_name":"Kirmiz, Michael"},{"last_name":"Van Der List","first_name":"Deborah","full_name":"Van Der List, Deborah"},{"full_name":"Bhandari, Pradeep","last_name":"Bhandari","first_name":"Pradeep","orcid":"0000-0003-0863-4481","id":"45EDD1BC-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Mack, Olivia A.","first_name":"Olivia A.","last_name":"Mack"},{"full_name":"Carroll, James","last_name":"Carroll","first_name":"James"},{"full_name":"Le Monnier, Elodie","id":"3B59276A-F248-11E8-B48F-1D18A9856A87","first_name":"Elodie","last_name":"Le Monnier"},{"full_name":"Aicher, Sue A.","last_name":"Aicher","first_name":"Sue A."},{"full_name":"Shigemoto, Ryuichi","first_name":"Ryuichi","last_name":"Shigemoto","id":"499F3ABC-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8761-9444"},{"full_name":"Trimmer, James S.","first_name":"James S.","last_name":"Trimmer"}],"scopus_import":"1","article_processing_charge":"Yes","has_accepted_license":"1","day":"26","article_type":"original","citation":{"ama":"Vierra NC, Ribeiro-Silva L, Kirmiz M, et al. Neuronal ER-plasma membrane junctions couple excitation to Ca2+-activated PKA signaling. Nature Communications. 2023;14. doi:10.1038/s41467-023-40930-6","ista":"Vierra NC, Ribeiro-Silva L, Kirmiz M, Van Der List D, Bhandari P, Mack OA, Carroll J, Le Monnier E, Aicher SA, Shigemoto R, Trimmer JS. 2023. Neuronal ER-plasma membrane junctions couple excitation to Ca2+-activated PKA signaling. Nature Communications. 14, 5231.","ieee":"N. C. Vierra et al., “Neuronal ER-plasma membrane junctions couple excitation to Ca2+-activated PKA signaling,” Nature Communications, vol. 14. Springer Nature, 2023.","apa":"Vierra, N. C., Ribeiro-Silva, L., Kirmiz, M., Van Der List, D., Bhandari, P., Mack, O. A., … Trimmer, J. S. (2023). Neuronal ER-plasma membrane junctions couple excitation to Ca2+-activated PKA signaling. Nature Communications. Springer Nature. https://doi.org/10.1038/s41467-023-40930-6","mla":"Vierra, Nicholas C., et al. “Neuronal ER-Plasma Membrane Junctions Couple Excitation to Ca2+-Activated PKA Signaling.” Nature Communications, vol. 14, 5231, Springer Nature, 2023, doi:10.1038/s41467-023-40930-6.","short":"N.C. Vierra, L. Ribeiro-Silva, M. Kirmiz, D. Van Der List, P. Bhandari, O.A. Mack, J. Carroll, E. Le Monnier, S.A. Aicher, R. Shigemoto, J.S. Trimmer, Nature Communications 14 (2023).","chicago":"Vierra, Nicholas C., Luisa Ribeiro-Silva, Michael Kirmiz, Deborah Van Der List, Pradeep Bhandari, Olivia A. Mack, James Carroll, et al. “Neuronal ER-Plasma Membrane Junctions Couple Excitation to Ca2+-Activated PKA Signaling.” Nature Communications. Springer Nature, 2023. https://doi.org/10.1038/s41467-023-40930-6."},"publication":"Nature Communications","date_published":"2023-08-26T00:00:00Z","type":"journal_article","abstract":[{"lang":"eng","text":"Junctions between the endoplasmic reticulum (ER) and the plasma membrane (PM) are specialized membrane contacts ubiquitous in eukaryotic cells. Concentration of intracellular signaling machinery near ER-PM junctions allows these domains to serve critical roles in lipid and Ca2+ signaling and homeostasis. Subcellular compartmentalization of protein kinase A (PKA) signaling also regulates essential cellular functions, however, no specific association between PKA and ER-PM junctional domains is known. Here, we show that in brain neurons type I PKA is directed to Kv2.1 channel-dependent ER-PM junctional domains via SPHKAP, a type I PKA-specific anchoring protein. SPHKAP association with type I PKA regulatory subunit RI and ER-resident VAP proteins results in the concentration of type I PKA between stacked ER cisternae associated with ER-PM junctions. This ER-associated PKA signalosome enables reciprocal regulation between PKA and Ca2+ signaling machinery to support Ca2+ influx and excitation-transcription coupling. These data reveal that neuronal ER-PM junctions support a receptor-independent form of PKA signaling driven by membrane depolarization and intracellular Ca2+, allowing conversion of information encoded in electrical signals into biochemical changes universally recognized throughout the cell."}],"intvolume":" 14","ddc":["570"],"title":"Neuronal ER-plasma membrane junctions couple excitation to Ca2+-activated PKA signaling","status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"14253","file":[{"file_id":"14270","relation":"main_file","success":1,"checksum":"6ab8aab4e957f626a09a1c73db3388fb","date_updated":"2023-09-06T06:50:07Z","date_created":"2023-09-06T06:50:07Z","access_level":"open_access","file_name":"2023_NatureComm_Vierra.pdf","creator":"dernst","content_type":"application/pdf","file_size":9412549}],"oa_version":"Published Version"},{"_id":"14259","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","ddc":["000"],"status":"public","title":"Guessing winning policies in LTL synthesis by semantic learning","intvolume":" 13964","oa_version":"Published Version","file":[{"file_name":"2023_LNCS_CAV_Kretinsky.pdf","access_level":"open_access","content_type":"application/pdf","file_size":428354,"creator":"dernst","relation":"main_file","file_id":"14276","date_updated":"2023-09-06T08:25:50Z","date_created":"2023-09-06T08:25:50Z","checksum":"ed66278b61bb869e1baba3d9b9081271","success":1}],"type":"conference","alternative_title":["LNCS"],"abstract":[{"lang":"eng","text":"We provide a learning-based technique for guessing a winning strategy in a parity game originating from an LTL synthesis problem. A cheaply obtained guess can be useful in several applications. Not only can the guessed strategy be applied as best-effort in cases where the game’s huge size prohibits rigorous approaches, but it can also increase the scalability of rigorous LTL synthesis in several ways. Firstly, checking whether a guessed strategy is winning is easier than constructing one. Secondly, even if the guess is wrong in some places, it can be fixed by strategy iteration faster than constructing one from scratch. Thirdly, the guess can be used in on-the-fly approaches to prioritize exploration in the most fruitful directions.\r\nIn contrast to previous works, we (i) reflect the highly structured logical information in game’s states, the so-called semantic labelling, coming from the recent LTL-to-automata translations, and (ii) learn to reflect it properly by learning from previously solved games, bringing the solving process closer to human-like reasoning."}],"publication":"35th International Conference on Computer Aided Verification ","citation":{"ama":"Kretinsky J, Meggendorfer T, Prokop M, Rieder S. Guessing winning policies in LTL synthesis by semantic learning. In: 35th International Conference on Computer Aided Verification . Vol 13964. Springer Nature; 2023:390-414. doi:10.1007/978-3-031-37706-8_20","ieee":"J. Kretinsky, T. Meggendorfer, M. Prokop, and S. Rieder, “Guessing winning policies in LTL synthesis by semantic learning,” in 35th International Conference on Computer Aided Verification , Paris, France, 2023, vol. 13964, pp. 390–414.","apa":"Kretinsky, J., Meggendorfer, T., Prokop, M., & Rieder, S. (2023). Guessing winning policies in LTL synthesis by semantic learning. In 35th International Conference on Computer Aided Verification (Vol. 13964, pp. 390–414). Paris, France: Springer Nature. https://doi.org/10.1007/978-3-031-37706-8_20","ista":"Kretinsky J, Meggendorfer T, Prokop M, Rieder S. 2023. Guessing winning policies in LTL synthesis by semantic learning. 35th International Conference on Computer Aided Verification . CAV: Computer Aided Verification, LNCS, vol. 13964, 390–414.","short":"J. Kretinsky, T. Meggendorfer, M. Prokop, S. Rieder, in:, 35th International Conference on Computer Aided Verification , Springer Nature, 2023, pp. 390–414.","mla":"Kretinsky, Jan, et al. “Guessing Winning Policies in LTL Synthesis by Semantic Learning.” 35th International Conference on Computer Aided Verification , vol. 13964, Springer Nature, 2023, pp. 390–414, doi:10.1007/978-3-031-37706-8_20.","chicago":"Kretinsky, Jan, Tobias Meggendorfer, Maximilian Prokop, and Sabine Rieder. “Guessing Winning Policies in LTL Synthesis by Semantic Learning.” In 35th International Conference on Computer Aided Verification , 13964:390–414. Springer Nature, 2023. https://doi.org/10.1007/978-3-031-37706-8_20."},"page":"390-414","date_published":"2023-07-17T00:00:00Z","scopus_import":"1","day":"17","has_accepted_license":"1","article_processing_charge":"Yes (in subscription journal)","year":"2023","acknowledgement":"This research was funded in part by the German Research Foundation (DFG) project 427755713 Group-By Objectives in Probabilistic Verification (GOPro).","publication_status":"published","department":[{"_id":"KrCh"}],"publisher":"Springer Nature","author":[{"full_name":"Kretinsky, Jan","id":"44CEF464-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8122-2881","first_name":"Jan","last_name":"Kretinsky"},{"full_name":"Meggendorfer, Tobias","id":"b21b0c15-30a2-11eb-80dc-f13ca25802e1","orcid":"0000-0002-1712-2165","first_name":"Tobias","last_name":"Meggendorfer"},{"full_name":"Prokop, Maximilian","last_name":"Prokop","first_name":"Maximilian"},{"first_name":"Sabine","last_name":"Rieder","full_name":"Rieder, Sabine"}],"date_created":"2023-09-03T22:01:16Z","date_updated":"2023-09-06T08:27:33Z","volume":13964,"file_date_updated":"2023-09-06T08:25:50Z","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"quality_controlled":"1","conference":{"end_date":"2023-07-22","location":"Paris, France","start_date":"2023-07-17","name":"CAV: Computer Aided Verification"},"doi":"10.1007/978-3-031-37706-8_20","language":[{"iso":"eng"}],"month":"07","publication_identifier":{"isbn":["9783031377051"],"eissn":["1611-3349"],"issn":["0302-9743"]}},{"publisher":"Institute of Electrical and Electronics Engineers","department":[{"_id":"FrLo"}],"title":"TeST: Test-time Self-Training under distribution shift","status":"public","publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"14105","year":"2023","oa_version":"Preprint","date_updated":"2023-09-06T10:26:56Z","date_created":"2023-08-21T12:11:38Z","author":[{"full_name":"Sinha, Samarth","first_name":"Samarth","last_name":"Sinha"},{"full_name":"Gehler, Peter","last_name":"Gehler","first_name":"Peter"},{"full_name":"Locatello, Francesco","id":"26cfd52f-2483-11ee-8040-88983bcc06d4","orcid":"0000-0002-4850-0683","first_name":"Francesco","last_name":"Locatello"},{"last_name":"Schiele","first_name":"Bernt","full_name":"Schiele, Bernt"}],"type":"conference","extern":"1","abstract":[{"lang":"eng","text":"Despite their recent success, deep neural networks continue to perform poorly when they encounter distribution shifts at test time. Many recently proposed approaches try to counter this by aligning the model to the new distribution prior to inference. With no labels available this requires unsupervised objectives to adapt the model on the observed test data. In this paper, we propose Test-Time SelfTraining (TeST): a technique that takes as input a model trained on some source data and a novel data distribution at test time, and learns invariant and robust representations using a student-teacher framework. We find that models adapted using TeST significantly improve over baseline testtime adaptation algorithms. TeST achieves competitive performance to modern domain adaptation algorithms [4, 43], while having access to 5-10x less data at time of adaption. We thoroughly evaluate a variety of baselines on two tasks:\r\nobject detection and image segmentation and find that models adapted with TeST. We find that TeST sets the new stateof-the art for test-time domain adaptation algorithms. "}],"quality_controlled":"1","citation":{"chicago":"Sinha, Samarth, Peter Gehler, Francesco Locatello, and Bernt Schiele. “TeST: Test-Time Self-Training under Distribution Shift.” In 2023 IEEE/CVF Winter Conference on Applications of Computer Vision. Institute of Electrical and Electronics Engineers, 2023. https://doi.org/10.1109/wacv56688.2023.00278.","mla":"Sinha, Samarth, et al. “TeST: Test-Time Self-Training under Distribution Shift.” 2023 IEEE/CVF Winter Conference on Applications of Computer Vision, Institute of Electrical and Electronics Engineers, 2023, doi:10.1109/wacv56688.2023.00278.","short":"S. Sinha, P. Gehler, F. Locatello, B. Schiele, in:, 2023 IEEE/CVF Winter Conference on Applications of Computer Vision, Institute of Electrical and Electronics Engineers, 2023.","ista":"Sinha S, Gehler P, Locatello F, Schiele B. 2023. TeST: Test-time Self-Training under distribution shift. 2023 IEEE/CVF Winter Conference on Applications of Computer Vision. WACV: Winter Conference on Applications of Computer Vision.","apa":"Sinha, S., Gehler, P., Locatello, F., & Schiele, B. (2023). TeST: Test-time Self-Training under distribution shift. In 2023 IEEE/CVF Winter Conference on Applications of Computer Vision. Waikoloa, HI, United States: Institute of Electrical and Electronics Engineers. https://doi.org/10.1109/wacv56688.2023.00278","ieee":"S. Sinha, P. Gehler, F. Locatello, and B. Schiele, “TeST: Test-time Self-Training under distribution shift,” in 2023 IEEE/CVF Winter Conference on Applications of Computer Vision, Waikoloa, HI, United States, 2023.","ama":"Sinha S, Gehler P, Locatello F, Schiele B. TeST: Test-time Self-Training under distribution shift. In: 2023 IEEE/CVF Winter Conference on Applications of Computer Vision. Institute of Electrical and Electronics Engineers; 2023. doi:10.1109/wacv56688.2023.00278"},"oa":1,"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/2209.11459"}],"external_id":{"arxiv":["2209.11459"]},"publication":"2023 IEEE/CVF Winter Conference on Applications of Computer Vision","language":[{"iso":"eng"}],"date_published":"2023-02-06T00:00:00Z","doi":"10.1109/wacv56688.2023.00278","conference":{"end_date":"2023-01-07","location":"Waikoloa, HI, United States","start_date":"2023-01-02","name":"WACV: Winter Conference on Applications of Computer Vision"},"scopus_import":"1","publication_identifier":{"eissn":["2642-9381"],"isbn":["9781665493475"]},"article_processing_charge":"No","month":"02","day":"06"},{"file_date_updated":"2023-09-06T07:13:19Z","article_number":"L9","author":[{"full_name":"Mathis, S.","last_name":"Mathis","first_name":"S."},{"full_name":"Bugnet, Lisa Annabelle","id":"d9edb345-f866-11ec-9b37-d119b5234501","orcid":"0000-0003-0142-4000","first_name":"Lisa Annabelle","last_name":"Bugnet"}],"volume":676,"date_created":"2023-09-03T22:01:15Z","date_updated":"2023-09-06T11:05:58Z","acknowledgement":"The authors are grateful to the referee for her/his detailed and constructive report, which has allowed us to improve our article. S. M. acknowledges support from the CNES GOLF-SOHO and PLATO grants at CEA/DAp and PNPS (CNRS/INSU). We thank R. A. Garcia for fruitful discussions and suggestions.","year":"2023","publisher":"EDP Sciences","department":[{"_id":"LiBu"}],"publication_status":"published","publication_identifier":{"issn":["0004-6361"],"eissn":["1432-0746"]},"month":"08","doi":"10.1051/0004-6361/202346832","language":[{"iso":"eng"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"external_id":{"arxiv":["2306.11587"],"isi":["001046037700007"]},"quality_controlled":"1","isi":1,"abstract":[{"lang":"eng","text":"Context. Space asteroseismology is revolutionizing our knowledge of the internal structure and dynamics of stars. A breakthrough is ongoing with the recent discoveries of signatures of strong magnetic fields in the core of red giant stars. The key signature for such a detection is the asymmetry these fields induce in the frequency splittings of observed dipolar mixed gravito-acoustic modes.\r\nAims. We investigate the ability of the observed asymmetries of the frequency splittings of dipolar mixed modes to constrain the geometrical properties of deep magnetic fields.\r\nMethods. We used the powerful analytical Racah-Wigner algebra used in quantum mechanics to characterize the geometrical couplings of dipolar mixed oscillation modes with various realistically plausible topologies of fossil magnetic fields. We also computed the induced perturbation of their frequencies.\r\nResults. First, in the case of an oblique magnetic dipole, we provide the exact analytical expression of the asymmetry as a function of the angle between the rotation and magnetic axes. Its value provides a direct measure of this angle. Second, considering a combination of axisymmetric dipolar and quadrupolar fields, we show how the asymmetry is blind to the unraveling of the relative strength and sign of each component. Finally, in the case of a given multipole, we show that a negative asymmetry is a signature of non-axisymmetric topologies.\r\nConclusions. Asymmetries of dipolar mixed modes provide a key bit of information on the geometrical topology of deep fossil magnetic fields, but this is insufficient on its own. Asteroseismic constraints should therefore be combined with spectropolarimetric observations and numerical simulations, which aim to predict the more probable stable large-scale geometries."}],"type":"journal_article","file":[{"file_size":458120,"content_type":"application/pdf","creator":"dernst","access_level":"open_access","file_name":"2023_AstronomyAstrophysics_Mathis.pdf","checksum":"7b30d26fb2b7bcb5b5be1414950615f9","success":1,"date_created":"2023-09-06T07:13:19Z","date_updated":"2023-09-06T07:13:19Z","relation":"main_file","file_id":"14271"}],"oa_version":"Published Version","_id":"14256","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","intvolume":" 676","ddc":["520"],"title":"Asymmetries of frequency splittings of dipolar mixed modes: A window on the topology of deep magnetic fields","status":"public","has_accepted_license":"1","article_processing_charge":"Yes (in subscription journal)","day":"01","scopus_import":"1","date_published":"2023-08-01T00:00:00Z","citation":{"chicago":"Mathis, S., and Lisa Annabelle Bugnet. “Asymmetries of Frequency Splittings of Dipolar Mixed Modes: A Window on the Topology of Deep Magnetic Fields.” Astronomy and Astrophysics. EDP Sciences, 2023. https://doi.org/10.1051/0004-6361/202346832.","mla":"Mathis, S., and Lisa Annabelle Bugnet. “Asymmetries of Frequency Splittings of Dipolar Mixed Modes: A Window on the Topology of Deep Magnetic Fields.” Astronomy and Astrophysics, vol. 676, L9, EDP Sciences, 2023, doi:10.1051/0004-6361/202346832.","short":"S. Mathis, L.A. Bugnet, Astronomy and Astrophysics 676 (2023).","ista":"Mathis S, Bugnet LA. 2023. Asymmetries of frequency splittings of dipolar mixed modes: A window on the topology of deep magnetic fields. Astronomy and Astrophysics. 676, L9.","apa":"Mathis, S., & Bugnet, L. A. (2023). Asymmetries of frequency splittings of dipolar mixed modes: A window on the topology of deep magnetic fields. Astronomy and Astrophysics. EDP Sciences. https://doi.org/10.1051/0004-6361/202346832","ieee":"S. Mathis and L. A. Bugnet, “Asymmetries of frequency splittings of dipolar mixed modes: A window on the topology of deep magnetic fields,” Astronomy and Astrophysics, vol. 676. EDP Sciences, 2023.","ama":"Mathis S, Bugnet LA. Asymmetries of frequency splittings of dipolar mixed modes: A window on the topology of deep magnetic fields. Astronomy and Astrophysics. 2023;676. doi:10.1051/0004-6361/202346832"},"publication":"Astronomy and Astrophysics","article_type":"letter_note"},{"article_processing_charge":"Yes (in subscription journal)","has_accepted_license":"1","day":"11","scopus_import":"1","date_published":"2023-08-11T00:00:00Z","page":"7395-7403","article_type":"original","citation":{"ama":"Gamper J, Kluibenschedl F, Weiss AKH, Hofer TS. Accessing position space wave functions in band structure calculations of periodic systems - a generalized, adapted numerov implementation for one-, two-, and three-dimensional quantum problems. Journal of Physical Chemistry Letters. 2023;14(33):7395-7403. doi:10.1021/acs.jpclett.3c01707","ista":"Gamper J, Kluibenschedl F, Weiss AKH, Hofer TS. 2023. Accessing position space wave functions in band structure calculations of periodic systems - a generalized, adapted numerov implementation for one-, two-, and three-dimensional quantum problems. Journal of Physical Chemistry Letters. 14(33), 7395–7403.","ieee":"J. Gamper, F. Kluibenschedl, A. K. H. Weiss, and T. S. Hofer, “Accessing position space wave functions in band structure calculations of periodic systems - a generalized, adapted numerov implementation for one-, two-, and three-dimensional quantum problems,” Journal of Physical Chemistry Letters, vol. 14, no. 33. American Chemical Society, pp. 7395–7403, 2023.","apa":"Gamper, J., Kluibenschedl, F., Weiss, A. K. H., & Hofer, T. S. (2023). Accessing position space wave functions in band structure calculations of periodic systems - a generalized, adapted numerov implementation for one-, two-, and three-dimensional quantum problems. Journal of Physical Chemistry Letters. American Chemical Society. https://doi.org/10.1021/acs.jpclett.3c01707","mla":"Gamper, Jakob, et al. “Accessing Position Space Wave Functions in Band Structure Calculations of Periodic Systems - a Generalized, Adapted Numerov Implementation for One-, Two-, and Three-Dimensional Quantum Problems.” Journal of Physical Chemistry Letters, vol. 14, no. 33, American Chemical Society, 2023, pp. 7395–403, doi:10.1021/acs.jpclett.3c01707.","short":"J. Gamper, F. Kluibenschedl, A.K.H. Weiss, T.S. Hofer, Journal of Physical Chemistry Letters 14 (2023) 7395–7403.","chicago":"Gamper, Jakob, Florian Kluibenschedl, Alexander K.H. Weiss, and Thomas S. Hofer. “Accessing Position Space Wave Functions in Band Structure Calculations of Periodic Systems - a Generalized, Adapted Numerov Implementation for One-, Two-, and Three-Dimensional Quantum Problems.” Journal of Physical Chemistry Letters. American Chemical Society, 2023. https://doi.org/10.1021/acs.jpclett.3c01707."},"publication":"Journal of Physical Chemistry Letters","issue":"33","abstract":[{"text":"In this work, a generalized, adapted Numerov implementation capable of determining band structures of periodic quantum systems is outlined. Based on the input potential, the presented approach numerically solves the Schrödinger equation in position space at each momentum space point. Thus, in addition to the band structure, the method inherently provides information about the state functions and probability densities in position space at each momentum space point considered. The generalized, adapted Numerov framework provided reliable estimates for a variety of increasingly complex test suites in one, two, and three dimensions. The accuracy of the proposed methodology was benchmarked against results obtained for the analytically solvable Kronig-Penney model. Furthermore, the presented numerical solver was applied to a model potential representing a 2D optical lattice being a challenging application relevant, for example, in the field of quantum computing.","lang":"eng"}],"type":"journal_article","oa_version":"Published Version","file":[{"file_id":"14272","relation":"main_file","date_updated":"2023-09-06T07:32:39Z","date_created":"2023-09-06T07:32:39Z","success":1,"checksum":"637454e2b3a357498d8d622d241c4bf6","file_name":"2023_JourPhysChemistry_Gamper.pdf","access_level":"open_access","creator":"dernst","file_size":4986859,"content_type":"application/pdf"}],"intvolume":" 14","ddc":["530","540"],"title":"Accessing position space wave functions in band structure calculations of periodic systems - a generalized, adapted numerov implementation for one-, two-, and three-dimensional quantum problems","status":"public","_id":"14261","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","publication_identifier":{"eissn":["1948-7185"]},"month":"08","language":[{"iso":"eng"}],"doi":"10.1021/acs.jpclett.3c01707","isi":1,"quality_controlled":"1","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"pmid":["37566743"],"isi":["001048165800001"]},"oa":1,"file_date_updated":"2023-09-06T07:32:39Z","volume":14,"date_updated":"2023-09-06T11:04:31Z","date_created":"2023-09-03T22:01:16Z","author":[{"full_name":"Gamper, Jakob","first_name":"Jakob","last_name":"Gamper"},{"id":"7499e70e-eb2c-11ec-b98b-f925648bc9d9","first_name":"Florian","last_name":"Kluibenschedl","full_name":"Kluibenschedl, Florian"},{"full_name":"Weiss, Alexander K.H.","last_name":"Weiss","first_name":"Alexander K.H."},{"last_name":"Hofer","first_name":"Thomas S.","full_name":"Hofer, Thomas S."}],"publisher":"American Chemical Society","department":[{"_id":"GradSch"}],"publication_status":"published","pmid":1,"year":"2023","acknowledgement":"Financial supports for this work via a PhD scholarship for J. Gamper issued by the Leopold-Franzens-University of Innsbruck (Vicerector Prof. Dr Ulrike Tanzer) are gratefully acknowledged. The computational results presented have been achieved (in part) using the HPC infrastructure of the University of Innsbruck."},{"alternative_title":["PMLR"],"type":"conference","abstract":[{"text":"This paper focuses on over-parameterized deep neural networks (DNNs) with ReLU activation functions and proves that when the data distribution is well-separated, DNNs can achieve Bayes-optimal test error for classification while obtaining (nearly) zero-training error under the lazy training regime. For this purpose, we unify three interrelated concepts of overparameterization, benign overfitting, and the Lipschitz constant of DNNs. Our results indicate that interpolating with smoother functions leads to better generalization. Furthermore, we investigate the special case where interpolating smooth ground-truth functions is performed by DNNs under the Neural Tangent Kernel (NTK) regime for generalization. Our result demonstrates that the generalization error converges to a constant order that only depends on label noise and initialization noise, which theoretically verifies benign overfitting. Our analysis provides a tight lower bound on the normalized margin under non-smooth activation functions, as well as the minimum eigenvalue of NTK under high-dimensional settings, which has its own interest in learning theory.","lang":"eng"}],"intvolume":" 202","title":"Benign overfitting in deep neural networks under lazy training","status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"14208","oa_version":"Preprint","article_processing_charge":"No","day":"30","page":"43105-43128","citation":{"mla":"Zhu, Zhenyu, et al. “Benign Overfitting in Deep Neural Networks under Lazy Training.” Proceedings of the 40th International Conference on Machine Learning, vol. 202, ML Research Press, 2023, pp. 43105–28.","short":"Z. Zhu, F. Liu, G.G. Chrysos, F. Locatello, V. Cevher, in:, Proceedings of the 40th International Conference on Machine Learning, ML Research Press, 2023, pp. 43105–43128.","chicago":"Zhu, Zhenyu, Fanghui Liu, Grigorios G Chrysos, Francesco Locatello, and Volkan Cevher. “Benign Overfitting in Deep Neural Networks under Lazy Training.” In Proceedings of the 40th International Conference on Machine Learning, 202:43105–28. ML Research Press, 2023.","ama":"Zhu Z, Liu F, Chrysos GG, Locatello F, Cevher V. Benign overfitting in deep neural networks under lazy training. In: Proceedings of the 40th International Conference on Machine Learning. Vol 202. ML Research Press; 2023:43105-43128.","ista":"Zhu Z, Liu F, Chrysos GG, Locatello F, Cevher V. 2023. Benign overfitting in deep neural networks under lazy training. Proceedings of the 40th International Conference on Machine Learning. International Conference on Machine Learning, PMLR, vol. 202, 43105–43128.","ieee":"Z. Zhu, F. Liu, G. G. Chrysos, F. Locatello, and V. Cevher, “Benign overfitting in deep neural networks under lazy training,” in Proceedings of the 40th International Conference on Machine Learning, Honolulu, Hawaii, United States, 2023, vol. 202, pp. 43105–43128.","apa":"Zhu, Z., Liu, F., Chrysos, G. G., Locatello, F., & Cevher, V. (2023). Benign overfitting in deep neural networks under lazy training. In Proceedings of the 40th International Conference on Machine Learning (Vol. 202, pp. 43105–43128). Honolulu, Hawaii, United States: ML Research Press."},"publication":"Proceedings of the 40th International Conference on Machine Learning","date_published":"2023-05-30T00:00:00Z","extern":"1","publisher":"ML Research Press","department":[{"_id":"FrLo"}],"publication_status":"published","year":"2023","volume":202,"date_updated":"2023-09-13T08:46:46Z","date_created":"2023-08-22T14:18:18Z","author":[{"full_name":"Zhu, Zhenyu","last_name":"Zhu","first_name":"Zhenyu"},{"full_name":"Liu, Fanghui","first_name":"Fanghui","last_name":"Liu"},{"first_name":"Grigorios G","last_name":"Chrysos","full_name":"Chrysos, Grigorios G"},{"last_name":"Locatello","first_name":"Francesco","orcid":"0000-0002-4850-0683","id":"26cfd52f-2483-11ee-8040-88983bcc06d4","full_name":"Locatello, Francesco"},{"first_name":"Volkan","last_name":"Cevher","full_name":"Cevher, Volkan"}],"month":"05","quality_controlled":"1","external_id":{"arxiv":["2305.19377"]},"main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2305.19377","open_access":"1"}],"oa":1,"language":[{"iso":"eng"}],"conference":{"start_date":"2023-07-23","location":"Honolulu, Hawaii, United States","end_date":"2023-07-29","name":"International Conference on Machine Learning"}},{"article_processing_charge":"No","day":"20","month":"04","language":[{"iso":"eng"}],"date_published":"2023-04-20T00:00:00Z","doi":"10.48550/arXiv.2304.10253","oa":1,"citation":{"short":"M.F. Burg, F. Wenzel, D. Zietlow, M. Horn, O. Makansi, F. Locatello, C. Russell, ArXiv (n.d.).","mla":"Burg, Max F., et al. “A Data Augmentation Perspective on Diffusion Models and Retrieval.” ArXiv, 2304.10253, doi:10.48550/arXiv.2304.10253.","chicago":"Burg, Max F., Florian Wenzel, Dominik Zietlow, Max Horn, Osama Makansi, Francesco Locatello, and Chris Russell. “A Data Augmentation Perspective on Diffusion Models and Retrieval.” ArXiv, n.d. https://doi.org/10.48550/arXiv.2304.10253.","ama":"Burg MF, Wenzel F, Zietlow D, et al. A data augmentation perspective on diffusion models and retrieval. arXiv. doi:10.48550/arXiv.2304.10253","ieee":"M. F. Burg et al., “A data augmentation perspective on diffusion models and retrieval,” arXiv. .","apa":"Burg, M. F., Wenzel, F., Zietlow, D., Horn, M., Makansi, O., Locatello, F., & Russell, C. (n.d.). A data augmentation perspective on diffusion models and retrieval. arXiv. https://doi.org/10.48550/arXiv.2304.10253","ista":"Burg MF, Wenzel F, Zietlow D, Horn M, Makansi O, Locatello F, Russell C. A data augmentation perspective on diffusion models and retrieval. arXiv, 2304.10253."},"external_id":{"arxiv":["2304.10253"]},"main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2304.10253"}],"publication":"arXiv","extern":"1","abstract":[{"lang":"eng","text":"Diffusion models excel at generating photorealistic images from text-queries. Naturally, many approaches have been proposed to use these generative abilities to augment training datasets for downstream tasks, such as classification. However, diffusion models are themselves trained on large noisily supervised, but nonetheless, annotated datasets. It is an open question whether the generalization capabilities of diffusion models beyond using the additional data of the pre-training process for augmentation lead to improved downstream performance. We perform a systematic evaluation of existing methods to generate images from diffusion models and study new extensions to assess their benefit for data augmentation. While we find that personalizing diffusion models towards the target data outperforms simpler prompting strategies, we also show that using the training data of the diffusion model alone, via a simple nearest neighbor retrieval procedure, leads to even stronger downstream performance. Overall, our study probes the limitations of diffusion models for data augmentation but also highlights its potential in generating new training data to improve performance on simple downstream vision tasks."}],"type":"preprint","article_number":"2304.10253","oa_version":"Preprint","date_updated":"2023-09-13T08:51:56Z","date_created":"2023-08-22T14:18:43Z","author":[{"full_name":"Burg, Max F.","last_name":"Burg","first_name":"Max F."},{"first_name":"Florian","last_name":"Wenzel","full_name":"Wenzel, Florian"},{"full_name":"Zietlow, Dominik","first_name":"Dominik","last_name":"Zietlow"},{"full_name":"Horn, Max","first_name":"Max","last_name":"Horn"},{"last_name":"Makansi","first_name":"Osama","full_name":"Makansi, Osama"},{"id":"26cfd52f-2483-11ee-8040-88983bcc06d4","orcid":"0000-0002-4850-0683","first_name":"Francesco","last_name":"Locatello","full_name":"Locatello, Francesco"},{"first_name":"Chris","last_name":"Russell","full_name":"Russell, Chris"}],"department":[{"_id":"FrLo"}],"publication_status":"submitted","status":"public","title":"A data augmentation perspective on diffusion models and retrieval","_id":"14209","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2023"},{"abstract":[{"lang":"eng","text":"Causal discovery methods are intrinsically constrained by the set of assumptions needed to ensure structure identifiability. Moreover additional restrictions are often imposed in order to simplify the inference task: this is the case for the Gaussian noise assumption on additive non-linear models, which is common to many causal discovery approaches. In this paper we show the shortcomings of inference under this hypothesis, analyzing the risk of edge inversion under violation of Gaussianity of the noise terms. Then, we propose a novel method for inferring the topological ordering of the variables in the causal graph, from data generated according to an additive non-linear model with a generic noise distribution. This leads to NoGAM (Not only Gaussian Additive noise Models), a causal discovery algorithm with a minimal set of assumptions and state of the art performance, experimentally benchmarked on synthetic data."}],"extern":"1","type":"conference","author":[{"full_name":"Montagna, Francesco","first_name":"Francesco","last_name":"Montagna"},{"full_name":"Noceti, Nicoletta","last_name":"Noceti","first_name":"Nicoletta"},{"full_name":"Rosasco, Lorenzo","first_name":"Lorenzo","last_name":"Rosasco"},{"first_name":"Kun","last_name":"Zhang","full_name":"Zhang, Kun"},{"last_name":"Locatello","first_name":"Francesco","orcid":"0000-0002-4850-0683","id":"26cfd52f-2483-11ee-8040-88983bcc06d4","full_name":"Locatello, Francesco"}],"date_updated":"2023-09-13T09:00:31Z","date_created":"2023-08-22T14:19:21Z","oa_version":"Preprint","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"14211","year":"2023","publication_status":"published","status":"public","title":"Causal discovery with score matching on additive models with arbitrary noise","department":[{"_id":"FrLo"}],"day":"01","month":"04","article_processing_charge":"No","scopus_import":"1","conference":{"name":"CLeaR: Conference on Causal Learning and Reasoning","end_date":"2023-04-14","location":"Tübingen, Germany","start_date":"2023-04-11"},"date_published":"2023-04-01T00:00:00Z","language":[{"iso":"eng"}],"publication":"2nd Conference on Causal Learning and Reasoning","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/2304.03265"}],"citation":{"short":"F. Montagna, N. Noceti, L. Rosasco, K. Zhang, F. Locatello, in:, 2nd Conference on Causal Learning and Reasoning, 2023.","mla":"Montagna, Francesco, et al. “Causal Discovery with Score Matching on Additive Models with Arbitrary Noise.” 2nd Conference on Causal Learning and Reasoning, 2023.","chicago":"Montagna, Francesco, Nicoletta Noceti, Lorenzo Rosasco, Kun Zhang, and Francesco Locatello. “Causal Discovery with Score Matching on Additive Models with Arbitrary Noise.” In 2nd Conference on Causal Learning and Reasoning, 2023.","ama":"Montagna F, Noceti N, Rosasco L, Zhang K, Locatello F. Causal discovery with score matching on additive models with arbitrary noise. In: 2nd Conference on Causal Learning and Reasoning. ; 2023.","ieee":"F. Montagna, N. Noceti, L. Rosasco, K. Zhang, and F. Locatello, “Causal discovery with score matching on additive models with arbitrary noise,” in 2nd Conference on Causal Learning and Reasoning, Tübingen, Germany, 2023.","apa":"Montagna, F., Noceti, N., Rosasco, L., Zhang, K., & Locatello, F. (2023). Causal discovery with score matching on additive models with arbitrary noise. In 2nd Conference on Causal Learning and Reasoning. Tübingen, Germany.","ista":"Montagna F, Noceti N, Rosasco L, Zhang K, Locatello F. 2023. Causal discovery with score matching on additive models with arbitrary noise. 2nd Conference on Causal Learning and Reasoning. CLeaR: Conference on Causal Learning and Reasoning."},"oa":1,"external_id":{"arxiv":["2304.03265"]},"quality_controlled":"1"},{"scopus_import":"1","day":"01","month":"04","article_processing_charge":"No","publication":"2nd Conference on Causal Learning and Reasoning","oa":1,"external_id":{"arxiv":["2304.03382"]},"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/2304.03382"}],"citation":{"chicago":"Montagna, Francesco, Nicoletta Noceti, Lorenzo Rosasco, Kun Zhang, and Francesco Locatello. “Scalable Causal Discovery with Score Matching.” In 2nd Conference on Causal Learning and Reasoning, 2023.","mla":"Montagna, Francesco, et al. “Scalable Causal Discovery with Score Matching.” 2nd Conference on Causal Learning and Reasoning, 2023.","short":"F. Montagna, N. Noceti, L. Rosasco, K. Zhang, F. Locatello, in:, 2nd Conference on Causal Learning and Reasoning, 2023.","ista":"Montagna F, Noceti N, Rosasco L, Zhang K, Locatello F. 2023. Scalable causal discovery with score matching. 2nd Conference on Causal Learning and Reasoning. CLeaR: Conference on Causal Learning and Reasoning.","apa":"Montagna, F., Noceti, N., Rosasco, L., Zhang, K., & Locatello, F. (2023). Scalable causal discovery with score matching. In 2nd Conference on Causal Learning and Reasoning. Tübingen, Germany.","ieee":"F. Montagna, N. Noceti, L. Rosasco, K. Zhang, and F. Locatello, “Scalable causal discovery with score matching,” in 2nd Conference on Causal Learning and Reasoning, Tübingen, Germany, 2023.","ama":"Montagna F, Noceti N, Rosasco L, Zhang K, Locatello F. Scalable causal discovery with score matching. In: 2nd Conference on Causal Learning and Reasoning. ; 2023."},"quality_controlled":"1","conference":{"name":"CLeaR: Conference on Causal Learning and Reasoning","end_date":"2023-04-14","location":"Tübingen, Germany","start_date":"2023-04-11"},"date_published":"2023-04-01T00:00:00Z","language":[{"iso":"eng"}],"type":"conference","abstract":[{"text":"This paper demonstrates how to discover the whole causal graph from the second derivative of the log-likelihood in observational non-linear additive Gaussian noise models. Leveraging scalable machine learning approaches to approximate the score function ∇logp(X), we extend the work of Rolland et al. (2022) that only recovers the topological order from the score and requires an expensive pruning step removing spurious edges among those admitted by the ordering. Our analysis leads to DAS (acronym for Discovery At Scale), a practical algorithm that reduces the complexity of the pruning by a factor proportional to the graph size. In practice, DAS achieves competitive accuracy with current state-of-the-art while being over an order of magnitude faster. Overall, our approach enables principled and scalable causal discovery, significantly lowering the compute bar.","lang":"eng"}],"extern":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"14212","year":"2023","publication_status":"published","title":"Scalable causal discovery with score matching","status":"public","department":[{"_id":"FrLo"}],"author":[{"full_name":"Montagna, Francesco","first_name":"Francesco","last_name":"Montagna"},{"full_name":"Noceti, Nicoletta","first_name":"Nicoletta","last_name":"Noceti"},{"last_name":"Rosasco","first_name":"Lorenzo","full_name":"Rosasco, Lorenzo"},{"first_name":"Kun","last_name":"Zhang","full_name":"Zhang, Kun"},{"full_name":"Locatello, Francesco","last_name":"Locatello","first_name":"Francesco","orcid":"0000-0002-4850-0683","id":"26cfd52f-2483-11ee-8040-88983bcc06d4"}],"date_created":"2023-08-22T14:19:40Z","date_updated":"2023-09-13T09:03:24Z","oa_version":"Preprint"},{"oa_version":"Preprint","date_created":"2023-08-22T14:20:18Z","date_updated":"2023-09-13T09:23:08Z","author":[{"full_name":"Liu, Yuejiang","first_name":"Yuejiang","last_name":"Liu"},{"first_name":"Alexandre","last_name":"Alahi","full_name":"Alahi, Alexandre"},{"first_name":"Chris","last_name":"Russell","full_name":"Russell, Chris"},{"full_name":"Horn, Max","first_name":"Max","last_name":"Horn"},{"last_name":"Zietlow","first_name":"Dominik","full_name":"Zietlow, Dominik"},{"last_name":"Schölkopf","first_name":"Bernhard","full_name":"Schölkopf, Bernhard"},{"id":"26cfd52f-2483-11ee-8040-88983bcc06d4","orcid":"0000-0002-4850-0683","first_name":"Francesco","last_name":"Locatello","full_name":"Locatello, Francesco"}],"department":[{"_id":"FrLo"}],"title":"Causal triplet: An open challenge for intervention-centric causal representation learning","status":"public","publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"14214","year":"2023","extern":"1","abstract":[{"lang":"eng","text":"Recent years have seen a surge of interest in learning high-level causal representations from low-level image pairs under interventions. Yet, existing efforts are largely limited to simple synthetic settings that are far away from real-world problems. In this paper, we present Causal Triplet, a causal representation learning benchmark featuring not only visually more complex scenes, but also two crucial desiderata commonly overlooked in previous works: (i) an actionable counterfactual setting, where only certain object-level variables allow for counterfactual observations whereas others do not; (ii) an interventional downstream task with an emphasis on out-of-distribution robustness from the independent causal mechanisms principle. Through extensive experiments, we find that models built with the knowledge of disentangled or object-centric representations significantly outperform their distributed counterparts. However, recent causal representation learning methods still struggle to identify such latent structures, indicating substantial challenges and opportunities for future work."}],"type":"conference","language":[{"iso":"eng"}],"date_published":"2023-04-12T00:00:00Z","conference":{"end_date":"2023-04-14","location":"Tübingen, Germany","start_date":"2023-04-11","name":"CLeaR: Conference on Causal Learning and Reasoning"},"quality_controlled":"1","main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2301.05169","open_access":"1"}],"external_id":{"arxiv":["2301.05169"]},"oa":1,"citation":{"chicago":"Liu, Yuejiang, Alexandre Alahi, Chris Russell, Max Horn, Dominik Zietlow, Bernhard Schölkopf, and Francesco Locatello. “Causal Triplet: An Open Challenge for Intervention-Centric Causal Representation Learning.” In 2nd Conference on Causal Learning and Reasoning, 2023.","short":"Y. Liu, A. Alahi, C. Russell, M. Horn, D. Zietlow, B. Schölkopf, F. Locatello, in:, 2nd Conference on Causal Learning and Reasoning, 2023.","mla":"Liu, Yuejiang, et al. “Causal Triplet: An Open Challenge for Intervention-Centric Causal Representation Learning.” 2nd Conference on Causal Learning and Reasoning, 2023.","ieee":"Y. Liu et al., “Causal triplet: An open challenge for intervention-centric causal representation learning,” in 2nd Conference on Causal Learning and Reasoning, Tübingen, Germany, 2023.","apa":"Liu, Y., Alahi, A., Russell, C., Horn, M., Zietlow, D., Schölkopf, B., & Locatello, F. (2023). Causal triplet: An open challenge for intervention-centric causal representation learning. In 2nd Conference on Causal Learning and Reasoning. Tübingen, Germany.","ista":"Liu Y, Alahi A, Russell C, Horn M, Zietlow D, Schölkopf B, Locatello F. 2023. Causal triplet: An open challenge for intervention-centric causal representation learning. 2nd Conference on Causal Learning and Reasoning. CLeaR: Conference on Causal Learning and Reasoning.","ama":"Liu Y, Alahi A, Russell C, et al. Causal triplet: An open challenge for intervention-centric causal representation learning. In: 2nd Conference on Causal Learning and Reasoning. ; 2023."},"publication":"2nd Conference on Causal Learning and Reasoning","article_processing_charge":"No","month":"04","day":"12"},{"abstract":[{"text":"Neural networks embed the geometric structure of a data manifold lying in a high-dimensional space into latent representations. Ideally, the distribution of the data points in the latent space should depend only on the task, the data, the loss, and other architecture-specific constraints. However, factors such as the random weights initialization, training hyperparameters, or other sources of randomness in the training phase may induce incoherent latent spaces that hinder any form of reuse. Nevertheless, we empirically observe that, under the same data and modeling choices, the angles between the encodings within distinct latent spaces do not change. In this work, we propose the latent similarity between each sample and a fixed set of anchors as an alternative data representation, demonstrating that it can enforce the desired invariances without any additional training. We show how neural architectures can leverage these relative representations to guarantee, in practice, invariance to latent isometries and rescalings, effectively enabling latent space communication: from zero-shot model stitching to latent space comparison between diverse settings. We extensively validate the generalization capability of our approach on different datasets, spanning various modalities (images, text, graphs), tasks (e.g., classification, reconstruction) and architectures (e.g., CNNs, GCNs, transformers).","lang":"eng"}],"extern":"1","type":"conference","author":[{"full_name":"Moschella, Luca","first_name":"Luca","last_name":"Moschella"},{"full_name":"Maiorca, Valentino","first_name":"Valentino","last_name":"Maiorca"},{"last_name":"Fumero","first_name":"Marco","full_name":"Fumero, Marco"},{"full_name":"Norelli, Antonio","last_name":"Norelli","first_name":"Antonio"},{"full_name":"Locatello, Francesco","orcid":"0000-0002-4850-0683","id":"26cfd52f-2483-11ee-8040-88983bcc06d4","last_name":"Locatello","first_name":"Francesco"},{"last_name":"Rodolà","first_name":"Emanuele","full_name":"Rodolà, Emanuele"}],"oa_version":"Preprint","date_created":"2023-08-22T14:22:20Z","date_updated":"2023-09-13T09:44:26Z","_id":"14217","year":"2023","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","department":[{"_id":"FrLo"}],"title":"Relative representations enable zero-shot latent space communication","publication_status":"published","status":"public","article_processing_charge":"No","day":"01","month":"05","date_published":"2023-05-01T00:00:00Z","conference":{"name":"International Conference on Machine Learning Representations","end_date":"2023-05-05","location":"Kigali, Rwanda","start_date":"2023-05-01"},"language":[{"iso":"eng"}],"citation":{"ama":"Moschella L, Maiorca V, Fumero M, Norelli A, Locatello F, Rodolà E. Relative representations enable zero-shot latent space communication. In: The 11th International Conference on Learning Representations. ; 2023.","ieee":"L. Moschella, V. Maiorca, M. Fumero, A. Norelli, F. Locatello, and E. Rodolà, “Relative representations enable zero-shot latent space communication,” in The 11th International Conference on Learning Representations, Kigali, Rwanda, 2023.","apa":"Moschella, L., Maiorca, V., Fumero, M., Norelli, A., Locatello, F., & Rodolà, E. (2023). Relative representations enable zero-shot latent space communication. In The 11th International Conference on Learning Representations. Kigali, Rwanda.","ista":"Moschella L, Maiorca V, Fumero M, Norelli A, Locatello F, Rodolà E. 2023. Relative representations enable zero-shot latent space communication. The 11th International Conference on Learning Representations. International Conference on Machine Learning Representations.","short":"L. Moschella, V. Maiorca, M. Fumero, A. Norelli, F. Locatello, E. Rodolà, in:, The 11th International Conference on Learning Representations, 2023.","mla":"Moschella, Luca, et al. “Relative Representations Enable Zero-Shot Latent Space Communication.” The 11th International Conference on Learning Representations, 2023.","chicago":"Moschella, Luca, Valentino Maiorca, Marco Fumero, Antonio Norelli, Francesco Locatello, and Emanuele Rodolà. “Relative Representations Enable Zero-Shot Latent Space Communication.” In The 11th International Conference on Learning Representations, 2023."},"main_file_link":[{"url":"https://arxiv.org/abs/2209.15430","open_access":"1"}],"external_id":{"arxiv":["2209.15430"]},"oa":1,"publication":"The 11th International Conference on Learning Representations","quality_controlled":"1"},{"abstract":[{"lang":"eng","text":"Learning generative object models from unlabelled videos is a long standing problem and required for causal scene modeling. We decompose this problem into three easier subtasks, and provide candidate solutions for each of them. Inspired by the Common Fate Principle of Gestalt Psychology, we first extract (noisy) masks of moving objects via unsupervised motion segmentation. Second, generative models are trained on the masks of the background and the moving objects, respectively. Third, background and foreground models are combined in a conditional \"dead leaves\" scene model to sample novel scene configurations where occlusions and depth layering arise naturally. To evaluate the individual stages, we introduce the Fishbowl dataset positioned between complex real-world scenes and common object-centric benchmarks of simplistic objects. We show that our approach allows learning generative models that generalize beyond the occlusions present in the input videos, and represent scenes in a modular fashion that allows sampling plausible scenes outside the training distribution by permitting, for instance, object numbers or densities not observed in the training set."}],"extern":"1","article_number":"2110.06562","type":"conference","author":[{"full_name":"Tangemann, Matthias","last_name":"Tangemann","first_name":"Matthias"},{"last_name":"Schneider","first_name":"Steffen","full_name":"Schneider, Steffen"},{"full_name":"Kügelgen, Julius von","first_name":"Julius von","last_name":"Kügelgen"},{"full_name":"Locatello, Francesco","id":"26cfd52f-2483-11ee-8040-88983bcc06d4","orcid":"0000-0002-4850-0683","first_name":"Francesco","last_name":"Locatello"},{"full_name":"Gehler, Peter","first_name":"Peter","last_name":"Gehler"},{"first_name":"Thomas","last_name":"Brox","full_name":"Brox, Thomas"},{"last_name":"Kümmerer","first_name":"Matthias","full_name":"Kümmerer, Matthias"},{"first_name":"Matthias","last_name":"Bethge","full_name":"Bethge, Matthias"},{"full_name":"Schölkopf, Bernhard","first_name":"Bernhard","last_name":"Schölkopf"}],"date_updated":"2023-09-13T11:31:14Z","date_created":"2023-08-22T14:23:54Z","oa_version":"Preprint","_id":"14222","year":"2023","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","publication_status":"published","title":"Unsupervised object learning via common fate","department":[{"_id":"FrLo"}],"day":"15","month":"04","article_processing_charge":"No","conference":{"name":"CLeaR: Conference on Causal Learning and Reasoning","end_date":"2023-04-14","location":"Tübingen, Germany","start_date":"2023-04-11"},"date_published":"2023-04-15T00:00:00Z","language":[{"iso":"eng"}],"publication":"2nd Conference on Causal Learning and Reasoning","citation":{"chicago":"Tangemann, Matthias, Steffen Schneider, Julius von Kügelgen, Francesco Locatello, Peter Gehler, Thomas Brox, Matthias Kümmerer, Matthias Bethge, and Bernhard Schölkopf. “Unsupervised Object Learning via Common Fate.” In 2nd Conference on Causal Learning and Reasoning, 2023.","short":"M. Tangemann, S. Schneider, J. von Kügelgen, F. Locatello, P. Gehler, T. Brox, M. Kümmerer, M. Bethge, B. Schölkopf, in:, 2nd Conference on Causal Learning and Reasoning, 2023.","mla":"Tangemann, Matthias, et al. “Unsupervised Object Learning via Common Fate.” 2nd Conference on Causal Learning and Reasoning, 2110.06562, 2023.","apa":"Tangemann, M., Schneider, S., Kügelgen, J. von, Locatello, F., Gehler, P., Brox, T., … Schölkopf, B. (2023). Unsupervised object learning via common fate. In 2nd Conference on Causal Learning and Reasoning. Tübingen, Germany.","ieee":"M. Tangemann et al., “Unsupervised object learning via common fate,” in 2nd Conference on Causal Learning and Reasoning, Tübingen, Germany, 2023.","ista":"Tangemann M, Schneider S, Kügelgen J von, Locatello F, Gehler P, Brox T, Kümmerer M, Bethge M, Schölkopf B. 2023. Unsupervised object learning via common fate. 2nd Conference on Causal Learning and Reasoning. CLeaR: Conference on Causal Learning and Reasoning, 2110.06562.","ama":"Tangemann M, Schneider S, Kügelgen J von, et al. Unsupervised object learning via common fate. In: 2nd Conference on Causal Learning and Reasoning. ; 2023."},"external_id":{"arxiv":["2110.06562"]},"main_file_link":[{"url":"https://arxiv.org/abs/2110.06562","open_access":"1"}],"oa":1,"quality_controlled":"1"},{"department":[{"_id":"FrLo"}],"publication_status":"published","title":"Bridging the gap to real-world object-centric learning","status":"public","_id":"14218","year":"2023","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Preprint","date_created":"2023-08-22T14:22:41Z","date_updated":"2023-09-13T11:37:03Z","author":[{"first_name":"Maximilian","last_name":"Seitzer","full_name":"Seitzer, Maximilian"},{"full_name":"Horn, Max","first_name":"Max","last_name":"Horn"},{"full_name":"Zadaianchuk, Andrii","first_name":"Andrii","last_name":"Zadaianchuk"},{"full_name":"Zietlow, Dominik","first_name":"Dominik","last_name":"Zietlow"},{"full_name":"Xiao, Tianjun","last_name":"Xiao","first_name":"Tianjun"},{"first_name":"Carl-Johann Simon-Gabriel","last_name":"Carl-Johann Simon-Gabriel","full_name":"Carl-Johann Simon-Gabriel, Carl-Johann Simon-Gabriel"},{"full_name":"He, Tong","last_name":"He","first_name":"Tong"},{"full_name":"Zhang, Zheng","first_name":"Zheng","last_name":"Zhang"},{"full_name":"Schölkopf, Bernhard","last_name":"Schölkopf","first_name":"Bernhard"},{"last_name":"Brox","first_name":"Thomas","full_name":"Brox, Thomas"},{"full_name":"Locatello, Francesco","orcid":"0000-0002-4850-0683","id":"26cfd52f-2483-11ee-8040-88983bcc06d4","last_name":"Locatello","first_name":"Francesco"}],"type":"conference","extern":"1","abstract":[{"text":"Humans naturally decompose their environment into entities at the appropriate level of abstraction to act in the world. Allowing machine learning algorithms to derive this decomposition in an unsupervised way has become an important line of research. However, current methods are restricted to simulated data or require additional information in the form of motion or depth in order to successfully discover objects. In this work, we overcome this limitation by showing that reconstructing features from models trained in a self-supervised manner is a sufficient training signal for object-centric representations to arise in a fully unsupervised way. Our approach, DINOSAUR, significantly out-performs existing image-based object-centric learning models on simulated data and is the first unsupervised object-centric model that scales to real-world datasets such as COCO and PASCAL VOC. DINOSAUR is conceptually simple and shows competitive performance compared to more involved pipelines from the computer vision literature.","lang":"eng"}],"quality_controlled":"1","citation":{"ama":"Seitzer M, Horn M, Zadaianchuk A, et al. Bridging the gap to real-world object-centric learning. In: The 11th International Conference on Learning Representations. ; 2023.","ieee":"M. Seitzer et al., “Bridging the gap to real-world object-centric learning,” in The 11th International Conference on Learning Representations, Kigali, Rwanda, 2023.","apa":"Seitzer, M., Horn, M., Zadaianchuk, A., Zietlow, D., Xiao, T., Carl-Johann Simon-Gabriel, C.-J. S.-G., … Locatello, F. (2023). Bridging the gap to real-world object-centric learning. In The 11th International Conference on Learning Representations. Kigali, Rwanda.","ista":"Seitzer M, Horn M, Zadaianchuk A, Zietlow D, Xiao T, Carl-Johann Simon-Gabriel C-JS-G, He T, Zhang Z, Schölkopf B, Brox T, Locatello F. 2023. Bridging the gap to real-world object-centric learning. The 11th International Conference on Learning Representations. ICLR: International Conference on Learning Representations.","short":"M. Seitzer, M. Horn, A. Zadaianchuk, D. Zietlow, T. Xiao, C.-J.S.-G. Carl-Johann Simon-Gabriel, T. He, Z. Zhang, B. Schölkopf, T. Brox, F. Locatello, in:, The 11th International Conference on Learning Representations, 2023.","mla":"Seitzer, Maximilian, et al. “Bridging the Gap to Real-World Object-Centric Learning.” The 11th International Conference on Learning Representations, 2023.","chicago":"Seitzer, Maximilian, Max Horn, Andrii Zadaianchuk, Dominik Zietlow, Tianjun Xiao, Carl-Johann Simon-Gabriel Carl-Johann Simon-Gabriel, Tong He, et al. “Bridging the Gap to Real-World Object-Centric Learning.” In The 11th International Conference on Learning Representations, 2023."},"external_id":{"arxiv":["2209.14860"]},"oa":1,"main_file_link":[{"url":"https://arxiv.org/abs/2209.14860","open_access":"1"}],"publication":"The 11th International Conference on Learning Representations","language":[{"iso":"eng"}],"date_published":"2023-05-10T00:00:00Z","conference":{"name":"ICLR: International Conference on Learning Representations","end_date":"2023-05-05","location":"Kigali, Rwanda","start_date":"2023-05-01"},"article_processing_charge":"No","day":"10","month":"05"},{"type":"conference","abstract":[{"text":"In this paper, we show that recent advances in self-supervised feature\r\nlearning enable unsupervised object discovery and semantic segmentation with a\r\nperformance that matches the state of the field on supervised semantic\r\nsegmentation 10 years ago. We propose a methodology based on unsupervised\r\nsaliency masks and self-supervised feature clustering to kickstart object\r\ndiscovery followed by training a semantic segmentation network on pseudo-labels\r\nto bootstrap the system on images with multiple objects. We present results on\r\nPASCAL VOC that go far beyond the current state of the art (50.0 mIoU), and we\r\nreport for the first time results on MS COCO for the whole set of 81 classes:\r\nour method discovers 34 categories with more than $20\\%$ IoU, while obtaining\r\nan average IoU of 19.6 for all 81 categories.","lang":"eng"}],"extern":"1","_id":"14219","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2023","department":[{"_id":"FrLo"}],"title":"Unsupervised semantic segmentation with self-supervised object-centric representations","publication_status":"published","status":"public","author":[{"full_name":"Zadaianchuk, Andrii","last_name":"Zadaianchuk","first_name":"Andrii"},{"full_name":"Kleindessner, Matthaeus","last_name":"Kleindessner","first_name":"Matthaeus"},{"full_name":"Zhu, Yi","last_name":"Zhu","first_name":"Yi"},{"full_name":"Locatello, Francesco","id":"26cfd52f-2483-11ee-8040-88983bcc06d4","orcid":"0000-0002-4850-0683","first_name":"Francesco","last_name":"Locatello"},{"full_name":"Brox, Thomas","last_name":"Brox","first_name":"Thomas"}],"oa_version":"Preprint","date_created":"2023-08-22T14:22:58Z","date_updated":"2023-09-13T11:25:43Z","article_processing_charge":"No","month":"05","day":"01","citation":{"chicago":"Zadaianchuk, Andrii, Matthaeus Kleindessner, Yi Zhu, Francesco Locatello, and Thomas Brox. “Unsupervised Semantic Segmentation with Self-Supervised Object-Centric Representations.” In The 11th International Conference on Learning Representations, 2023.","mla":"Zadaianchuk, Andrii, et al. “Unsupervised Semantic Segmentation with Self-Supervised Object-Centric Representations.” The 11th International Conference on Learning Representations, 2023.","short":"A. Zadaianchuk, M. Kleindessner, Y. Zhu, F. Locatello, T. Brox, in:, The 11th International Conference on Learning Representations, 2023.","ista":"Zadaianchuk A, Kleindessner M, Zhu Y, Locatello F, Brox T. 2023. Unsupervised semantic segmentation with self-supervised object-centric representations. The 11th International Conference on Learning Representations. ICLR: International Conference on Learning Representations.","apa":"Zadaianchuk, A., Kleindessner, M., Zhu, Y., Locatello, F., & Brox, T. (2023). Unsupervised semantic segmentation with self-supervised object-centric representations. In The 11th International Conference on Learning Representations. Kigali, Rwanda.","ieee":"A. Zadaianchuk, M. Kleindessner, Y. Zhu, F. Locatello, and T. Brox, “Unsupervised semantic segmentation with self-supervised object-centric representations,” in The 11th International Conference on Learning Representations, Kigali, Rwanda, 2023.","ama":"Zadaianchuk A, Kleindessner M, Zhu Y, Locatello F, Brox T. Unsupervised semantic segmentation with self-supervised object-centric representations. In: The 11th International Conference on Learning Representations. ; 2023."},"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/2207.05027"}],"oa":1,"external_id":{"arxiv":["2207.05027"]},"publication":"The 11th International Conference on Learning Representations","quality_controlled":"1","date_published":"2023-05-01T00:00:00Z","conference":{"end_date":"2023-05-05","start_date":"2023-05-01","location":"Kigali, Rwanda","name":"ICLR: International Conference on Learning Representations"},"language":[{"iso":"eng"}]},{"article_number":"2307.09552","type":"preprint","extern":"1","abstract":[{"text":"As causal ground truth is incredibly rare, causal discovery algorithms are\r\ncommonly only evaluated on simulated data. This is concerning, given that\r\nsimulations reflect common preconceptions about generating processes regarding\r\nnoise distributions, model classes, and more. In this work, we propose a novel\r\nmethod for falsifying the output of a causal discovery algorithm in the absence\r\nof ground truth. Our key insight is that while statistical learning seeks\r\nstability across subsets of data points, causal learning should seek stability\r\nacross subsets of variables. Motivated by this insight, our method relies on a\r\nnotion of compatibility between causal graphs learned on different subsets of\r\nvariables. We prove that detecting incompatibilities can falsify wrongly\r\ninferred causal relations due to violation of assumptions or errors from finite\r\nsample effects. Although passing such compatibility tests is only a necessary\r\ncriterion for good performance, we argue that it provides strong evidence for\r\nthe causal models whenever compatibility entails strong implications for the\r\njoint distribution. We also demonstrate experimentally that detection of\r\nincompatibilities can aid in causal model selection.","lang":"eng"}],"status":"public","publication_status":"submitted","title":"Self-compatibility: Evaluating causal discovery without ground truth","department":[{"_id":"FrLo"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"14333","year":"2023","date_updated":"2023-09-13T12:47:53Z","date_created":"2023-09-13T12:44:59Z","oa_version":"Preprint","author":[{"full_name":"Faller, Philipp M.","first_name":"Philipp M.","last_name":"Faller"},{"first_name":"Leena Chennuru","last_name":"Vankadara","full_name":"Vankadara, Leena Chennuru"},{"last_name":"Mastakouri","first_name":"Atalanti A.","full_name":"Mastakouri, Atalanti A."},{"last_name":"Locatello","first_name":"Francesco","orcid":"0000-0002-4850-0683","id":"26cfd52f-2483-11ee-8040-88983bcc06d4","full_name":"Locatello, Francesco"},{"last_name":"Janzing","first_name":"Dominik","full_name":"Janzing, Dominik"}],"day":"18","month":"07","article_processing_charge":"No","publication":"arXiv","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2307.09552"}],"external_id":{"arxiv":["2307.09552"]},"citation":{"chicago":"Faller, Philipp M., Leena Chennuru Vankadara, Atalanti A. Mastakouri, Francesco Locatello, and Dominik Janzing. “Self-Compatibility: Evaluating Causal Discovery without Ground Truth.” ArXiv, n.d. https://doi.org/10.48550/arXiv.2307.09552.","short":"P.M. Faller, L.C. Vankadara, A.A. Mastakouri, F. Locatello, D. Janzing, ArXiv (n.d.).","mla":"Faller, Philipp M., et al. “Self-Compatibility: Evaluating Causal Discovery without Ground Truth.” ArXiv, 2307.09552, doi:10.48550/arXiv.2307.09552.","ieee":"P. M. Faller, L. C. Vankadara, A. A. Mastakouri, F. Locatello, and D. Janzing, “Self-compatibility: Evaluating causal discovery without ground truth,” arXiv. .","apa":"Faller, P. M., Vankadara, L. C., Mastakouri, A. A., Locatello, F., & Janzing, D. (n.d.). Self-compatibility: Evaluating causal discovery without ground truth. arXiv. https://doi.org/10.48550/arXiv.2307.09552","ista":"Faller PM, Vankadara LC, Mastakouri AA, Locatello F, Janzing D. Self-compatibility: Evaluating causal discovery without ground truth. arXiv, 2307.09552.","ama":"Faller PM, Vankadara LC, Mastakouri AA, Locatello F, Janzing D. Self-compatibility: Evaluating causal discovery without ground truth. arXiv. doi:10.48550/arXiv.2307.09552"},"oa":1,"language":[{"iso":"eng"}],"date_published":"2023-07-18T00:00:00Z","doi":"10.48550/arXiv.2307.09552"},{"article_type":"original","publication":"PRX Life","citation":{"chicago":"Boocock, Daniel R, Tsuyoshi Hirashima, and Edouard B Hannezo. “Interplay between Mechanochemical Patterning and Glassy Dynamics in Cellular Monolayers.” PRX Life. American Physical Society, 2023. https://doi.org/10.1103/prxlife.1.013001.","mla":"Boocock, Daniel R., et al. “Interplay between Mechanochemical Patterning and Glassy Dynamics in Cellular Monolayers.” PRX Life, vol. 1, no. 1, 013001, American Physical Society, 2023, doi:10.1103/prxlife.1.013001.","short":"D.R. Boocock, T. Hirashima, E.B. Hannezo, PRX Life 1 (2023).","ista":"Boocock DR, Hirashima T, Hannezo EB. 2023. Interplay between mechanochemical patterning and glassy dynamics in cellular monolayers. PRX Life. 1(1), 013001.","ieee":"D. R. Boocock, T. Hirashima, and E. B. Hannezo, “Interplay between mechanochemical patterning and glassy dynamics in cellular monolayers,” PRX Life, vol. 1, no. 1. American Physical Society, 2023.","apa":"Boocock, D. R., Hirashima, T., & Hannezo, E. B. (2023). Interplay between mechanochemical patterning and glassy dynamics in cellular monolayers. PRX Life. American Physical Society. https://doi.org/10.1103/prxlife.1.013001","ama":"Boocock DR, Hirashima T, Hannezo EB. Interplay between mechanochemical patterning and glassy dynamics in cellular monolayers. PRX Life. 2023;1(1). doi:10.1103/prxlife.1.013001"},"date_published":"2023-07-20T00:00:00Z","day":"20","article_processing_charge":"Yes","has_accepted_license":"1","status":"public","ddc":["570"],"title":"Interplay between mechanochemical patterning and glassy dynamics in cellular monolayers","intvolume":" 1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"14277","file":[{"success":1,"checksum":"f881d98c89eb9f1aa136d7b781511553","date_updated":"2023-09-15T06:30:50Z","date_created":"2023-09-15T06:30:50Z","file_id":"14335","relation":"main_file","creator":"dernst","content_type":"application/pdf","file_size":2559520,"access_level":"open_access","file_name":"2023_PRXLife_Boocock.pdf"}],"oa_version":"Published Version","type":"journal_article","abstract":[{"lang":"eng","text":"Living tissues are characterized by an intrinsically mechanochemical interplay of active physical forces and complex biochemical signaling pathways. Either feature alone can give rise to complex emergent phenomena, for example, mechanically driven glassy dynamics and rigidity transitions, or chemically driven reaction-diffusion instabilities. An important question is how to quantitatively assess the contribution of these different cues to the large-scale dynamics of biological materials. We address this in Madin-Darby canine kidney (MDCK) monolayers, considering both mechanochemical feedback between extracellular signal-regulated kinase (ERK) signaling activity and cellular density as well as a mechanically active tissue rheology via a self-propelled vertex model. We show that the relative strength of active migration forces to mechanochemical couplings controls a transition from a uniform active glass to periodic spatiotemporal waves. We parametrize the model from published experimental data sets on MDCK monolayers and use it to make new predictions on the correlation functions of cellular dynamics and the dynamics of topological defects associated with the oscillatory phase of cells. Interestingly, MDCK monolayers are best described by an intermediary parameter region in which both mechanochemical couplings and noisy active propulsion have a strong influence on the dynamics. Finally, we study how tissue rheology and ERK waves produce feedback on one another and uncover a mechanism via which tissue fluidity can be controlled by mechanochemical waves at both the local and global levels."}],"issue":"1","quality_controlled":"1","project":[{"call_identifier":"H2020","name":"Design Principles of Branching Morphogenesis","grant_number":"851288","_id":"05943252-7A3F-11EA-A408-12923DDC885E"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"language":[{"iso":"eng"}],"doi":"10.1103/prxlife.1.013001","month":"07","publication_identifier":{"issn":["2835-8279"]},"publication_status":"published","department":[{"_id":"EdHa"}],"publisher":"American Physical Society","year":"2023","acknowledgement":"We thank all members of the Hannezo group for discussions and suggestions, as well as Sound Wai Phow for technical assistance. This work received funding from the European Research Council under the EU Horizon 2020 research and innovation program Grant Agreement No. 851288 (E.H.), JSPS KAKENHI Grant No. 21H05290, and the Ministry of Education under the Research Centres of Excellence program through the MBI at NUS.","date_created":"2023-09-06T08:30:59Z","date_updated":"2023-09-15T06:39:17Z","volume":1,"author":[{"orcid":"0000-0002-1585-2631","id":"453AF628-F248-11E8-B48F-1D18A9856A87","last_name":"Boocock","first_name":"Daniel R","full_name":"Boocock, Daniel R"},{"full_name":"Hirashima, Tsuyoshi","last_name":"Hirashima","first_name":"Tsuyoshi"},{"first_name":"Edouard B","last_name":"Hannezo","id":"3A9DB764-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6005-1561","full_name":"Hannezo, Edouard B"}],"article_number":"013001","file_date_updated":"2023-09-15T06:30:50Z","ec_funded":1},{"author":[{"first_name":"Michele","last_name":"Nardin","id":"30BD0376-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8849-6570","full_name":"Nardin, Michele"},{"full_name":"Käfer, Karola","last_name":"Käfer","first_name":"Karola","id":"2DAA49AA-F248-11E8-B48F-1D18A9856A87"},{"orcid":"0000-0001-9439-3148","id":"39AF1E74-F248-11E8-B48F-1D18A9856A87","last_name":"Stella","first_name":"Federico","full_name":"Stella, Federico"},{"full_name":"Csicsvari, Jozsef L","first_name":"Jozsef L","last_name":"Csicsvari","id":"3FA14672-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-5193-4036"}],"volume":42,"date_created":"2023-09-10T22:01:11Z","date_updated":"2023-09-15T07:14:12Z","pmid":1,"acknowledgement":"We thank A. Cumpelik, H. Chiossi, and L. Bollman for comments on an earlier version of this manuscript. This work was funded by EU-FP7 MC-ITN IN-SENS (grant 607616).","year":"2023","department":[{"_id":"JoCs"}],"publisher":"Elsevier","publication_status":"published","ec_funded":1,"file_date_updated":"2023-09-15T07:12:46Z","article_number":"113015","doi":"10.1016/j.celrep.2023.113015","language":[{"iso":"eng"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"pmid":["37632747"]},"oa":1,"project":[{"_id":"257BBB4C-B435-11E9-9278-68D0E5697425","grant_number":"607616","call_identifier":"FP7","name":"Inter-and intracellular signalling in schizophrenia"}],"quality_controlled":"1","publication_identifier":{"eissn":["2211-1247"]},"month":"09","file":[{"file_name":"2023_CellPress_Nardin.pdf","access_level":"open_access","creator":"dernst","content_type":"application/pdf","file_size":4879455,"file_id":"14337","relation":"main_file","date_created":"2023-09-15T07:12:46Z","date_updated":"2023-09-15T07:12:46Z","success":1,"checksum":"ca77a304fb813c292550b8604b0fb41d"}],"oa_version":"Published Version","_id":"14314","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","intvolume":" 42","title":"Theta oscillations as a substrate for medial prefrontal-hippocampal assembly interactions","status":"public","ddc":["570"],"issue":"9","abstract":[{"lang":"eng","text":"The execution of cognitive functions requires coordinated circuit activity across different brain areas that involves the associated firing of neuronal assemblies. Here, we tested the circuit mechanism behind assembly interactions between the hippocampus and the medial prefrontal cortex (mPFC) of adult rats by recording neuronal populations during a rule-switching task. We identified functionally coupled CA1-mPFC cells that synchronized their activity beyond that expected from common spatial coding or oscillatory firing. When such cell pairs fired together, the mPFC cell strongly phase locked to CA1 theta oscillations and maintained consistent theta firing phases, independent of the theta timing of their CA1 counterpart. These functionally connected CA1-mPFC cells formed interconnected assemblies. While firing together with their CA1 assembly partners, mPFC cells fired along specific theta sequences. Our results suggest that upregulated theta oscillatory firing of mPFC cells can signal transient interactions with specific CA1 assemblies, thus enabling distributed computations."}],"type":"journal_article","date_published":"2023-09-26T00:00:00Z","citation":{"ama":"Nardin M, Käfer K, Stella F, Csicsvari JL. Theta oscillations as a substrate for medial prefrontal-hippocampal assembly interactions. Cell Reports. 2023;42(9). doi:10.1016/j.celrep.2023.113015","ieee":"M. Nardin, K. Käfer, F. Stella, and J. L. Csicsvari, “Theta oscillations as a substrate for medial prefrontal-hippocampal assembly interactions,” Cell Reports, vol. 42, no. 9. Elsevier, 2023.","apa":"Nardin, M., Käfer, K., Stella, F., & Csicsvari, J. L. (2023). Theta oscillations as a substrate for medial prefrontal-hippocampal assembly interactions. Cell Reports. Elsevier. https://doi.org/10.1016/j.celrep.2023.113015","ista":"Nardin M, Käfer K, Stella F, Csicsvari JL. 2023. Theta oscillations as a substrate for medial prefrontal-hippocampal assembly interactions. Cell Reports. 42(9), 113015.","short":"M. Nardin, K. Käfer, F. Stella, J.L. Csicsvari, Cell Reports 42 (2023).","mla":"Nardin, Michele, et al. “Theta Oscillations as a Substrate for Medial Prefrontal-Hippocampal Assembly Interactions.” Cell Reports, vol. 42, no. 9, 113015, Elsevier, 2023, doi:10.1016/j.celrep.2023.113015.","chicago":"Nardin, Michele, Karola Käfer, Federico Stella, and Jozsef L Csicsvari. “Theta Oscillations as a Substrate for Medial Prefrontal-Hippocampal Assembly Interactions.” Cell Reports. Elsevier, 2023. https://doi.org/10.1016/j.celrep.2023.113015."},"publication":"Cell Reports","article_type":"original","article_processing_charge":"Yes","has_accepted_license":"1","day":"26","scopus_import":"1"},{"abstract":[{"text":"During apoptosis, caspases degrade 8 out of ~30 nucleoporins to irreversibly demolish the nuclear pore complex. However, for poorly understood reasons, caspases are also activated during cell differentiation. Here, we show that sublethal activation of caspases during myogenesis results in the transient proteolysis of four peripheral Nups and one transmembrane Nup. ‘Trimmed’ NPCs become nuclear export-defective, and we identified in an unbiased manner several classes of cytoplasmic, plasma membrane, and mitochondrial proteins that rapidly accumulate in the nucleus. NPC trimming by non-apoptotic caspases was also observed in neurogenesis and endoplasmic reticulum stress. Our results suggest that caspases can reversibly modulate nuclear transport activity, which allows them to function as agents of cell differentiation and adaptation at sublethal levels.","lang":"eng"}],"type":"journal_article","file":[{"date_updated":"2023-09-15T06:59:10Z","date_created":"2023-09-15T06:59:10Z","checksum":"db24bf3d595507387b48d3799c33e289","success":1,"relation":"main_file","file_id":"14336","file_size":3703097,"content_type":"application/pdf","creator":"dernst","file_name":"2023_eLife_Cho.pdf","access_level":"open_access"}],"oa_version":"Published Version","_id":"14315","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","intvolume":" 12","title":"Caspase-mediated nuclear pore complex trimming in cell differentiation and endoplasmic reticulum stress","status":"public","ddc":["570"],"article_processing_charge":"Yes","has_accepted_license":"1","day":"04","scopus_import":"1","date_published":"2023-09-04T00:00:00Z","citation":{"ieee":"U. H. Cho and M. Hetzer, “Caspase-mediated nuclear pore complex trimming in cell differentiation and endoplasmic reticulum stress,” eLife, vol. 12. eLife Sciences Publications, 2023.","apa":"Cho, U. H., & Hetzer, M. (2023). Caspase-mediated nuclear pore complex trimming in cell differentiation and endoplasmic reticulum stress. ELife. eLife Sciences Publications. https://doi.org/10.7554/eLife.89066","ista":"Cho UH, Hetzer M. 2023. Caspase-mediated nuclear pore complex trimming in cell differentiation and endoplasmic reticulum stress. eLife. 12, RP89066.","ama":"Cho UH, Hetzer M. Caspase-mediated nuclear pore complex trimming in cell differentiation and endoplasmic reticulum stress. eLife. 2023;12. doi:10.7554/eLife.89066","chicago":"Cho, Ukrae H., and Martin Hetzer. “Caspase-Mediated Nuclear Pore Complex Trimming in Cell Differentiation and Endoplasmic Reticulum Stress.” ELife. eLife Sciences Publications, 2023. https://doi.org/10.7554/eLife.89066.","short":"U.H. Cho, M. Hetzer, ELife 12 (2023).","mla":"Cho, Ukrae H., and Martin Hetzer. “Caspase-Mediated Nuclear Pore Complex Trimming in Cell Differentiation and Endoplasmic Reticulum Stress.” ELife, vol. 12, RP89066, eLife Sciences Publications, 2023, doi:10.7554/eLife.89066."},"publication":"eLife","article_type":"original","file_date_updated":"2023-09-15T06:59:10Z","article_number":"RP89066","author":[{"full_name":"Cho, Ukrae H.","first_name":"Ukrae H.","last_name":"Cho"},{"full_name":"Hetzer, Martin W","first_name":"Martin W","last_name":"Hetzer","id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","orcid":"0000-0002-2111-992X"}],"volume":12,"date_updated":"2023-09-15T07:07:10Z","date_created":"2023-09-10T22:01:11Z","pmid":1,"acknowledgement":"We thank the members of the Hetzer laboratory, Tony Hunter (Salk), Lorenzo Puri (Sanford Burnham Prebys), and Jongmin Kim (Massachusetts General Hospital) for the critical reading of the manuscript; Kenneth Diffenderfer and Aimee Pankonin (Stem Cell Core at the Salk Institute) for help with neurogenesis; Carol Marchetto and Fred Gage (Salk) for providing H9 embryonic stem cells; Lorenzo Puri, Alexandra Sacco, and Luca Caputo (Sanford Burnham Prebys) for helpful discussions and sharing mouse primary myoblasts. This work was supported by a Glenn Foundation for Medical Research Postdoctoral Fellowship in Aging Research (UHC), the NOMIS foundation (MWH), and the National Institutes of Health (R01 NS096786 to MWH and K01 AR080828 to UHC). This work was also supported by the Mass Spectrometry Core of the Salk Institute with funding from NIH-NCI CCSG: P30 014195 and the Helmsley Center for Genomic Medicine. We thank Jolene Diedrich and Antonio Pinto for technical support.","year":"2023","department":[{"_id":"MaHe"}],"publisher":"eLife Sciences Publications","publication_status":"published","publication_identifier":{"eissn":["2050-084X"]},"month":"09","doi":"10.7554/eLife.89066","language":[{"iso":"eng"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"external_id":{"pmid":["37665327"]},"quality_controlled":"1"},{"doi":"10.37236/11714","language":[{"iso":"eng"}],"external_id":{"arxiv":["2212.03100"]},"tmp":{"short":"CC BY-ND (4.0)","image":"/image/cc_by_nd.png","name":"Creative Commons Attribution-NoDerivatives 4.0 International (CC BY-ND 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nd/4.0/legalcode"},"oa":1,"quality_controlled":"1","project":[{"grant_number":"101034413","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c","name":"IST-BRIDGE: International postdoctoral program","call_identifier":"H2020"}],"month":"07","publication_identifier":{"eissn":["1077-8926"]},"author":[{"first_name":"Michael","last_name":"Anastos","id":"0b2a4358-bb35-11ec-b7b9-e3279b593dbb","full_name":"Anastos, Michael"},{"first_name":"David","last_name":"Fabian","full_name":"Fabian, David"},{"first_name":"Alp","last_name":"Müyesser","full_name":"Müyesser, Alp"},{"full_name":"Szabó, Tibor","first_name":"Tibor","last_name":"Szabó"}],"date_updated":"2023-09-15T08:12:30Z","date_created":"2023-09-10T22:01:12Z","volume":30,"year":"2023","acknowledgement":"Anastos has received funding from the European Union’s Horizon 2020 research and in-novation programme under the Marie Sk lodowska-Curie grant agreement No 101034413.Fabian’s research is supported by the Deutsche Forschungsgemeinschaft (DFG, GermanResearch Foundation) Graduiertenkolleg “Facets of Complexity” (GRK 2434).","publication_status":"published","publisher":"Electronic Journal of Combinatorics","department":[{"_id":"MaKw"}],"file_date_updated":"2023-09-15T08:02:09Z","ec_funded":1,"license":"https://creativecommons.org/licenses/by-nd/4.0/","article_number":"P3.10","date_published":"2023-07-28T00:00:00Z","publication":"Electronic Journal of Combinatorics","citation":{"apa":"Anastos, M., Fabian, D., Müyesser, A., & Szabó, T. (2023). Splitting matchings and the Ryser-Brualdi-Stein conjecture for multisets. Electronic Journal of Combinatorics. Electronic Journal of Combinatorics. https://doi.org/10.37236/11714","ieee":"M. Anastos, D. Fabian, A. Müyesser, and T. Szabó, “Splitting matchings and the Ryser-Brualdi-Stein conjecture for multisets,” Electronic Journal of Combinatorics, vol. 30, no. 3. Electronic Journal of Combinatorics, 2023.","ista":"Anastos M, Fabian D, Müyesser A, Szabó T. 2023. Splitting matchings and the Ryser-Brualdi-Stein conjecture for multisets. Electronic Journal of Combinatorics. 30(3), P3.10.","ama":"Anastos M, Fabian D, Müyesser A, Szabó T. Splitting matchings and the Ryser-Brualdi-Stein conjecture for multisets. Electronic Journal of Combinatorics. 2023;30(3). doi:10.37236/11714","chicago":"Anastos, Michael, David Fabian, Alp Müyesser, and Tibor Szabó. “Splitting Matchings and the Ryser-Brualdi-Stein Conjecture for Multisets.” Electronic Journal of Combinatorics. Electronic Journal of Combinatorics, 2023. https://doi.org/10.37236/11714.","short":"M. Anastos, D. Fabian, A. Müyesser, T. Szabó, Electronic Journal of Combinatorics 30 (2023).","mla":"Anastos, Michael, et al. “Splitting Matchings and the Ryser-Brualdi-Stein Conjecture for Multisets.” Electronic Journal of Combinatorics, vol. 30, no. 3, P3.10, Electronic Journal of Combinatorics, 2023, doi:10.37236/11714."},"article_type":"original","day":"28","has_accepted_license":"1","article_processing_charge":"Yes","scopus_import":"1","oa_version":"Published Version","file":[{"file_id":"14338","relation":"main_file","success":1,"checksum":"52c46c8cb329f9aaee9ade01525f317b","date_updated":"2023-09-15T08:02:09Z","date_created":"2023-09-15T08:02:09Z","access_level":"open_access","file_name":"2023_elecJournCombinatorics_Anastos.pdf","creator":"dernst","file_size":247917,"content_type":"application/pdf"}],"_id":"14319","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","ddc":["510"],"title":"Splitting matchings and the Ryser-Brualdi-Stein conjecture for multisets","status":"public","intvolume":" 30","abstract":[{"lang":"eng","text":"We study multigraphs whose edge-sets are the union of three perfect matchings, M1, M2, and M3. Given such a graph G and any a1; a2; a3 2 N with a1 +a2 +a3 6 n - 2, we show there exists a matching M of G with jM \\ Mij = ai for each i 2 f1; 2; 3g. The bound n - 2 in the theorem is best possible in general. We conjecture however that if G is bipartite, the same result holds with n - 2 replaced by n - 1. We give a construction that shows such a result would be tight. We\r\nalso make a conjecture generalising the Ryser-Brualdi-Stein conjecture with colour\r\nmultiplicities."}],"issue":"3","type":"journal_article"},{"doi":"10.1007/978-3-031-37709-9_2","conference":{"name":"CAV: Computer Aided Verification","end_date":"2023-07-22","location":"Paris, France","start_date":"2023-07-17"},"language":[{"iso":"eng"}],"oa":1,"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"project":[{"name":"Formal Methods for Stochastic Models: Algorithms and Applications","call_identifier":"H2020","_id":"0599E47C-7A3F-11EA-A408-12923DDC885E","grant_number":"863818"}],"quality_controlled":"1","publication_identifier":{"isbn":["9783031377082"],"eissn":["1611-3349"],"issn":["0302-9743"]},"month":"07","related_material":{"link":[{"relation":"software","url":"https://github.com/boyvolcano/PRR"}]},"author":[{"last_name":"Sun","first_name":"Yican","full_name":"Sun, Yican"},{"first_name":"Hongfei","last_name":"Fu","full_name":"Fu, Hongfei"},{"full_name":"Chatterjee, Krishnendu","first_name":"Krishnendu","last_name":"Chatterjee","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4561-241X"},{"orcid":"0000-0003-1702-6584","id":"391365CE-F248-11E8-B48F-1D18A9856A87","last_name":"Goharshady","first_name":"Amir Kafshdar","full_name":"Goharshady, Amir Kafshdar"}],"volume":13966,"date_updated":"2023-09-20T08:25:57Z","date_created":"2023-09-10T22:01:12Z","acknowledgement":"We thank Prof. Bican Xia for valuable information on the exponential theory of reals. The work is partially supported by the National Natural Science Foundation of China (NSFC) with Grant No. 62172271, ERC CoG 863818 (ForM-SMArt), the Hong Kong Research Grants Council ECS Project Number 26208122, the HKUST-Kaisa Joint Research Institute Project Grant HKJRI3A-055 and the HKUST Startup Grant R9272.","year":"2023","publisher":"Springer Nature","department":[{"_id":"KrCh"}],"publication_status":"published","ec_funded":1,"file_date_updated":"2023-09-20T08:24:47Z","date_published":"2023-07-17T00:00:00Z","citation":{"ieee":"Y. Sun, H. Fu, K. Chatterjee, and A. K. Goharshady, “Automated tail bound analysis for probabilistic recurrence relations,” in Computer Aided Verification, Paris, France, 2023, vol. 13966, pp. 16–39.","apa":"Sun, Y., Fu, H., Chatterjee, K., & Goharshady, A. K. (2023). Automated tail bound analysis for probabilistic recurrence relations. In Computer Aided Verification (Vol. 13966, pp. 16–39). Paris, France: Springer Nature. https://doi.org/10.1007/978-3-031-37709-9_2","ista":"Sun Y, Fu H, Chatterjee K, Goharshady AK. 2023. Automated tail bound analysis for probabilistic recurrence relations. Computer Aided Verification. CAV: Computer Aided Verification, LNCS, vol. 13966, 16–39.","ama":"Sun Y, Fu H, Chatterjee K, Goharshady AK. Automated tail bound analysis for probabilistic recurrence relations. In: Computer Aided Verification. Vol 13966. Springer Nature; 2023:16-39. doi:10.1007/978-3-031-37709-9_2","chicago":"Sun, Yican, Hongfei Fu, Krishnendu Chatterjee, and Amir Kafshdar Goharshady. “Automated Tail Bound Analysis for Probabilistic Recurrence Relations.” In Computer Aided Verification, 13966:16–39. Springer Nature, 2023. https://doi.org/10.1007/978-3-031-37709-9_2.","short":"Y. Sun, H. Fu, K. Chatterjee, A.K. Goharshady, in:, Computer Aided Verification, Springer Nature, 2023, pp. 16–39.","mla":"Sun, Yican, et al. “Automated Tail Bound Analysis for Probabilistic Recurrence Relations.” Computer Aided Verification, vol. 13966, Springer Nature, 2023, pp. 16–39, doi:10.1007/978-3-031-37709-9_2."},"publication":"Computer Aided Verification","page":"16-39","has_accepted_license":"1","article_processing_charge":"Yes (in subscription journal)","day":"17","scopus_import":"1","file":[{"file_id":"14348","relation":"main_file","success":1,"checksum":"42917e086f8c7699f3bccf84f74fe000","date_created":"2023-09-20T08:24:47Z","date_updated":"2023-09-20T08:24:47Z","access_level":"open_access","file_name":"2023_LNCS_Sun.pdf","creator":"dernst","file_size":624647,"content_type":"application/pdf"}],"oa_version":"Published Version","_id":"14318","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","intvolume":" 13966","status":"public","title":"Automated tail bound analysis for probabilistic recurrence relations","ddc":["000"],"abstract":[{"text":"Probabilistic recurrence relations (PRRs) are a standard formalism for describing the runtime of a randomized algorithm. Given a PRR and a time limit κ, we consider the tail probability Pr[T≥κ], i.e., the probability that the randomized runtime T of the PRR exceeds κ. Our focus is the formal analysis of tail bounds that aims at finding a tight asymptotic upper bound u≥Pr[T≥κ]. To address this problem, the classical and most well-known approach is the cookbook method by Karp (JACM 1994), while other approaches are mostly limited to deriving tail bounds of specific PRRs via involved custom analysis.\r\nIn this work, we propose a novel approach for deriving the common exponentially-decreasing tail bounds for PRRs whose preprocessing time and random passed sizes observe discrete or (piecewise) uniform distribution and whose recursive call is either a single procedure call or a divide-and-conquer. We first establish a theoretical approach via Markov’s inequality, and then instantiate the theoretical approach with a template-based algorithmic approach via a refined treatment of exponentiation. Experimental evaluation shows that our algorithmic approach is capable of deriving tail bounds that are (i) asymptotically tighter than Karp’s method, (ii) match the best-known manually-derived asymptotic tail bound for QuickSelect, and (iii) is only slightly worse (with a loglogn factor) than the manually-proven optimal asymptotic tail bound for QuickSort. Moreover, our algorithmic approach handles all examples (including realistic PRRs such as QuickSort, QuickSelect, DiameterComputation, etc.) in less than 0.1 s, showing that our approach is efficient in practice.","lang":"eng"}],"type":"conference","alternative_title":["LNCS"]},{"abstract":[{"lang":"eng","text":"Markov decision processes can be viewed as transformers of probability distributions. While this view is useful from a practical standpoint to reason about trajectories of distributions, basic reachability and safety problems are known to be computationally intractable (i.e., Skolem-hard) to solve in such models. Further, we show that even for simple examples of MDPs, strategies for safety objectives over distributions can require infinite memory and randomization.\r\nIn light of this, we present a novel overapproximation approach to synthesize strategies in an MDP, such that a safety objective over the distributions is met. More precisely, we develop a new framework for template-based synthesis of certificates as affine distributional and inductive invariants for safety objectives in MDPs. We provide two algorithms within this framework. One can only synthesize memoryless strategies, but has relative completeness guarantees, while the other can synthesize general strategies. The runtime complexity of both algorithms is in PSPACE. We implement these algorithms and show that they can solve several non-trivial examples."}],"type":"conference","alternative_title":["LNCS"],"oa_version":"Published Version","file":[{"file_name":"2023_LNCS_Akshay.pdf","access_level":"open_access","content_type":"application/pdf","file_size":531745,"creator":"dernst","relation":"main_file","file_id":"14349","date_created":"2023-09-20T08:46:43Z","date_updated":"2023-09-20T08:46:43Z","checksum":"f143c8eedf609f20f2aad2eeb496d53f","success":1}],"_id":"14317","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","intvolume":" 13966","status":"public","ddc":["000"],"title":"MDPs as distribution transformers: Affine invariant synthesis for safety objectives","has_accepted_license":"1","article_processing_charge":"Yes (in subscription journal)","day":"17","scopus_import":"1","date_published":"2023-07-17T00:00:00Z","citation":{"mla":"Akshay, S., et al. “MDPs as Distribution Transformers: Affine Invariant Synthesis for Safety Objectives.” International Conference on Computer Aided Verification, vol. 13966, Springer Nature, 2023, pp. 86–112, doi:10.1007/978-3-031-37709-9_5.","short":"S. Akshay, K. Chatterjee, T. Meggendorfer, D. Zikelic, in:, International Conference on Computer Aided Verification, Springer Nature, 2023, pp. 86–112.","chicago":"Akshay, S., Krishnendu Chatterjee, Tobias Meggendorfer, and Dorde Zikelic. “MDPs as Distribution Transformers: Affine Invariant Synthesis for Safety Objectives.” In International Conference on Computer Aided Verification, 13966:86–112. Springer Nature, 2023. https://doi.org/10.1007/978-3-031-37709-9_5.","ama":"Akshay S, Chatterjee K, Meggendorfer T, Zikelic D. MDPs as distribution transformers: Affine invariant synthesis for safety objectives. In: International Conference on Computer Aided Verification. Vol 13966. Springer Nature; 2023:86-112. doi:10.1007/978-3-031-37709-9_5","ista":"Akshay S, Chatterjee K, Meggendorfer T, Zikelic D. 2023. MDPs as distribution transformers: Affine invariant synthesis for safety objectives. International Conference on Computer Aided Verification. CAV: Computer Aided Verification, LNCS, vol. 13966, 86–112.","ieee":"S. Akshay, K. Chatterjee, T. Meggendorfer, and D. Zikelic, “MDPs as distribution transformers: Affine invariant synthesis for safety objectives,” in International Conference on Computer Aided Verification, Paris, France, 2023, vol. 13966, pp. 86–112.","apa":"Akshay, S., Chatterjee, K., Meggendorfer, T., & Zikelic, D. (2023). MDPs as distribution transformers: Affine invariant synthesis for safety objectives. In International Conference on Computer Aided Verification (Vol. 13966, pp. 86–112). Paris, France: Springer Nature. https://doi.org/10.1007/978-3-031-37709-9_5"},"publication":"International Conference on Computer Aided Verification","page":"86-112","ec_funded":1,"file_date_updated":"2023-09-20T08:46:43Z","author":[{"first_name":"S.","last_name":"Akshay","full_name":"Akshay, S."},{"full_name":"Chatterjee, Krishnendu","orcid":"0000-0002-4561-241X","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","last_name":"Chatterjee","first_name":"Krishnendu"},{"full_name":"Meggendorfer, Tobias","first_name":"Tobias","last_name":"Meggendorfer","id":"b21b0c15-30a2-11eb-80dc-f13ca25802e1","orcid":"0000-0002-1712-2165"},{"last_name":"Zikelic","first_name":"Dorde","orcid":"0000-0002-4681-1699","id":"294AA7A6-F248-11E8-B48F-1D18A9856A87","full_name":"Zikelic, Dorde"}],"volume":13966,"date_created":"2023-09-10T22:01:12Z","date_updated":"2023-09-20T09:04:40Z","year":"2023","acknowledgement":"This work was supported in part by the ERC CoG 863818 (FoRM-SMArt) and the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 665385 as well as DST/CEFIPRA/INRIA project EQuaVE and SERB Matrices grant MTR/2018/00074.","department":[{"_id":"KrCh"}],"publisher":"Springer Nature","publication_status":"published","publication_identifier":{"isbn":["9783031377082"],"eissn":["1611-3349"],"issn":["0302-9743"]},"month":"07","doi":"10.1007/978-3-031-37709-9_5","conference":{"name":"CAV: Computer Aided Verification","start_date":"2023-07-17","location":"Paris, France","end_date":"2023-07-22"},"language":[{"iso":"eng"}],"oa":1,"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"project":[{"name":"International IST Doctoral Program","call_identifier":"H2020","_id":"2564DBCA-B435-11E9-9278-68D0E5697425","grant_number":"665385"},{"name":"Formal Methods for Stochastic Models: Algorithms and Applications","call_identifier":"H2020","grant_number":"863818","_id":"0599E47C-7A3F-11EA-A408-12923DDC885E"}],"quality_controlled":"1"},{"article_type":"original","citation":{"ista":"Nagano M, Aoshima K, Shimamura H, Siekhaus DE, Toshima JY, Toshima J. 2023. Distinct role of TGN-resident clathrin adaptors for Vps21p activation in the TGN-endosome trafficking pathway. Journal of Cell Science. 136(17), jcs261448.","ieee":"M. Nagano, K. Aoshima, H. Shimamura, D. E. Siekhaus, J. Y. Toshima, and J. Toshima, “Distinct role of TGN-resident clathrin adaptors for Vps21p activation in the TGN-endosome trafficking pathway,” Journal of Cell Science, vol. 136, no. 17. The Company of Biologists, 2023.","apa":"Nagano, M., Aoshima, K., Shimamura, H., Siekhaus, D. E., Toshima, J. Y., & Toshima, J. (2023). Distinct role of TGN-resident clathrin adaptors for Vps21p activation in the TGN-endosome trafficking pathway. Journal of Cell Science. The Company of Biologists. https://doi.org/10.1242/jcs.261448","ama":"Nagano M, Aoshima K, Shimamura H, Siekhaus DE, Toshima JY, Toshima J. Distinct role of TGN-resident clathrin adaptors for Vps21p activation in the TGN-endosome trafficking pathway. Journal of Cell Science. 2023;136(17). doi:10.1242/jcs.261448","chicago":"Nagano, Makoto, Kaito Aoshima, Hiroki Shimamura, Daria E Siekhaus, Junko Y. Toshima, and Jiro Toshima. “Distinct Role of TGN-Resident Clathrin Adaptors for Vps21p Activation in the TGN-Endosome Trafficking Pathway.” Journal of Cell Science. The Company of Biologists, 2023. https://doi.org/10.1242/jcs.261448.","mla":"Nagano, Makoto, et al. “Distinct Role of TGN-Resident Clathrin Adaptors for Vps21p Activation in the TGN-Endosome Trafficking Pathway.” Journal of Cell Science, vol. 136, no. 17, jcs261448, The Company of Biologists, 2023, doi:10.1242/jcs.261448.","short":"M. Nagano, K. Aoshima, H. Shimamura, D.E. Siekhaus, J.Y. Toshima, J. Toshima, Journal of Cell Science 136 (2023)."},"publication":"Journal of Cell Science","date_published":"2023-09-01T00:00:00Z","scopus_import":"1","article_processing_charge":"No","day":"01","intvolume":" 136","title":"Distinct role of TGN-resident clathrin adaptors for Vps21p activation in the TGN-endosome trafficking pathway","status":"public","_id":"14316","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Preprint","type":"journal_article","issue":"17","abstract":[{"lang":"eng","text":"Clathrin-mediated vesicle trafficking plays central roles in post-Golgi transport. In yeast (Saccharomyces cerevisiae), the AP-1 complex and GGA adaptors are predicted to generate distinct transport vesicles at the trans-Golgi network (TGN), and the epsin-related proteins Ent3p and Ent5p (collectively Ent3p/5p) act as accessories for these adaptors. Recently, we showed that vesicle transport from the TGN is crucial for yeast Rab5 (Vps21p)-mediated endosome formation, and that Ent3p/5p are crucial for this process, whereas AP-1 and GGA adaptors are dispensable. However, these observations were incompatible with previous studies showing that these adaptors are required for Ent3p/5p recruitment to the TGN, and thus the overall mechanism responsible for regulation of Vps21p activity remains ambiguous. Here, we investigated the functional relationships between clathrin adaptors in post-Golgi-mediated Vps21p activation. We show that AP-1 disruption in the ent3Δ5Δ mutant impaired transport of the Vps21p guanine nucleotide exchange factor Vps9p transport to the Vps21p compartment and severely reduced Vps21p activity. Additionally, GGA adaptors, the phosphatidylinositol-4-kinase Pik1p and Rab11 GTPases Ypt31p and Ypt32p were found to have partially overlapping functions for recruitment of AP-1 and Ent3p/5p to the TGN. These findings suggest a distinct role of clathrin adaptors for Vps21p activation in the TGN–endosome trafficking pathway."}],"quality_controlled":"1","oa":1,"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1101/2023.03.27.534325"}],"external_id":{"pmid":["37539494"]},"language":[{"iso":"eng"}],"doi":"10.1242/jcs.261448","publication_identifier":{"eissn":["1477-9137"],"issn":["0021-9533"]},"month":"09","publisher":"The Company of Biologists","department":[{"_id":"DaSi"}],"publication_status":"published","pmid":1,"year":"2023","volume":136,"date_updated":"2023-09-20T09:14:15Z","date_created":"2023-09-10T22:01:12Z","author":[{"full_name":"Nagano, Makoto","first_name":"Makoto","last_name":"Nagano"},{"full_name":"Aoshima, Kaito","last_name":"Aoshima","first_name":"Kaito"},{"last_name":"Shimamura","first_name":"Hiroki","full_name":"Shimamura, Hiroki"},{"id":"3D224B9E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8323-8353","first_name":"Daria E","last_name":"Siekhaus","full_name":"Siekhaus, Daria E"},{"full_name":"Toshima, Junko Y.","first_name":"Junko Y.","last_name":"Toshima"},{"first_name":"Jiro","last_name":"Toshima","full_name":"Toshima, Jiro"}],"article_number":"jcs261448"},{"article_number":"125411","publisher":"American Physical Society","department":[{"_id":"MaSe"},{"_id":"ChLa"},{"_id":"MiLe"}],"publication_status":"published","acknowledgement":"A.F.Y. acknowledges primary support from the Department of Energy under award DE-SC0020043, and additional support from the Gordon and Betty Moore Foundation under award GBMF9471 for group operations.","year":"2023","volume":108,"date_created":"2023-09-12T07:12:12Z","date_updated":"2023-09-20T09:38:24Z","author":[{"full_name":"Henderson, Paul M","id":"13C09E74-18D9-11E9-8878-32CFE5697425","orcid":"0000-0002-5198-7445","first_name":"Paul M","last_name":"Henderson"},{"first_name":"Areg","last_name":"Ghazaryan","id":"4AF46FD6-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-9666-3543","full_name":"Ghazaryan, Areg"},{"first_name":"Alexander A.","last_name":"Zibrov","full_name":"Zibrov, Alexander A."},{"last_name":"Young","first_name":"Andrea F.","full_name":"Young, Andrea F."},{"full_name":"Serbyn, Maksym","first_name":"Maksym","last_name":"Serbyn","id":"47809E7E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2399-5827"}],"publication_identifier":{"issn":["2469-9950"],"eissn":["2469-9969"]},"month":"09","quality_controlled":"1","oa":1,"main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2210.06310"}],"external_id":{"arxiv":["2210.06310"]},"language":[{"iso":"eng"}],"doi":"10.1103/physrevb.108.125411","type":"journal_article","issue":"12","abstract":[{"text":"The development of two-dimensional materials has resulted in a diverse range of novel, high-quality compounds with increasing complexity. A key requirement for a comprehensive quantitative theory is the accurate determination of these materials' band structure parameters. However, this task is challenging due to the intricate band structures and the indirect nature of experimental probes. In this work, we introduce a general framework to derive band structure parameters from experimental data using deep neural networks. We applied our method to the penetration field capacitance measurement of trilayer graphene, an effective probe of its density of states. First, we demonstrate that a trained deep network gives accurate predictions for the penetration field capacitance as a function of tight-binding parameters. Next, we use the fast and accurate predictions from the trained network to automatically determine tight-binding parameters directly from experimental data, with extracted parameters being in a good agreement with values in the literature. We conclude by discussing potential applications of our method to other materials and experimental techniques beyond penetration field capacitance.","lang":"eng"}],"intvolume":" 108","title":"Deep learning extraction of band structure parameters from density of states: A case study on trilayer graphene","status":"public","_id":"14320","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Preprint","scopus_import":"1","article_processing_charge":"No","day":"15","article_type":"original","citation":{"ista":"Henderson PM, Ghazaryan A, Zibrov AA, Young AF, Serbyn M. 2023. Deep learning extraction of band structure parameters from density of states: A case study on trilayer graphene. Physical Review B. 108(12), 125411.","apa":"Henderson, P. M., Ghazaryan, A., Zibrov, A. A., Young, A. F., & Serbyn, M. (2023). Deep learning extraction of band structure parameters from density of states: A case study on trilayer graphene. Physical Review B. American Physical Society. https://doi.org/10.1103/physrevb.108.125411","ieee":"P. M. Henderson, A. Ghazaryan, A. A. Zibrov, A. F. Young, and M. Serbyn, “Deep learning extraction of band structure parameters from density of states: A case study on trilayer graphene,” Physical Review B, vol. 108, no. 12. American Physical Society, 2023.","ama":"Henderson PM, Ghazaryan A, Zibrov AA, Young AF, Serbyn M. Deep learning extraction of band structure parameters from density of states: A case study on trilayer graphene. Physical Review B. 2023;108(12). doi:10.1103/physrevb.108.125411","chicago":"Henderson, Paul M, Areg Ghazaryan, Alexander A. Zibrov, Andrea F. Young, and Maksym Serbyn. “Deep Learning Extraction of Band Structure Parameters from Density of States: A Case Study on Trilayer Graphene.” Physical Review B. American Physical Society, 2023. https://doi.org/10.1103/physrevb.108.125411.","mla":"Henderson, Paul M., et al. “Deep Learning Extraction of Band Structure Parameters from Density of States: A Case Study on Trilayer Graphene.” Physical Review B, vol. 108, no. 12, 125411, American Physical Society, 2023, doi:10.1103/physrevb.108.125411.","short":"P.M. Henderson, A. Ghazaryan, A.A. Zibrov, A.F. Young, M. Serbyn, Physical Review B 108 (2023)."},"publication":"Physical Review B","date_published":"2023-09-15T00:00:00Z"},{"_id":"12732","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","status":"public","title":"Ergodicity breaking in disordered and kinetically constrained quantum many-body systems","ddc":["530"],"file":[{"creator":"pbrighi","file_size":42167561,"content_type":"application/zip","access_level":"closed","file_name":"Thesis_sub_PBrighi.zip","checksum":"5d2de651ef9449c1b8dc27148ca74777","date_created":"2023-03-23T16:42:56Z","date_updated":"2023-03-23T16:42:56Z","file_id":"12753","relation":"source_file"},{"file_name":"Thesis_PBrighi.pdf","access_level":"open_access","creator":"pbrighi","content_type":"application/pdf","file_size":13977000,"file_id":"12754","relation":"main_file","date_created":"2023-03-23T16:43:14Z","date_updated":"2023-03-23T16:43:14Z","success":1,"checksum":"7caa153d4a5b0873a79358787d2dfe1e"}],"oa_version":"None","type":"dissertation","alternative_title":["ISTA Thesis"],"abstract":[{"lang":"eng","text":"Nonergodic systems, whose out-of-equilibrium dynamics fail to thermalize, provide a fascinating research direction both for fundamental reasons and for application in state of the art quantum devices.\r\nGoing beyond the description of statistical mechanics, ergodicity breaking yields a new paradigm in quantum many-body physics, introducing novel phases of matter with no counterpart at equilibrium.\r\nIn this Thesis, we address different open questions in the field, focusing on disorder-induced many-body localization (MBL) and on weak ergodicity breaking in kinetically constrained models.\r\nIn particular, we contribute to the debate about transport in kinetically constrained models, studying the effect of $U(1)$ conservation and inversion-symmetry breaking in a family of quantum East models.\r\nUsing tensor network techniques, we analyze the dynamics of large MBL systems beyond the limit of exact numerical methods.\r\nIn this setting, we approach the debated topic of the coexistence of localized and thermal eigenstates separated by energy thresholds known as many-body mobility edges.\r\nInspired by recent experiments, our work further investigates the localization of a small bath induced by the coupling to a large localized chain, the so-called MBL proximity effect.\r\n\r\nIn the first Chapter, we introduce a family of particle-conserving kinetically constrained models, inspired by the quantum East model.\r\nThe system we study features strong inversion-symmetry breaking, due to the nature of the correlated hopping.\r\nWe show that these models host so-called quantum Hilbert space fragmentation, consisting of disconnected subsectors in an entangled basis, and further provide an analytical description of this phenomenon.\r\nWe further probe its effect on dynamics of simple product states, showing revivals in fidelity and local observalbes.\r\nThe study of dynamics within the largest subsector reveals an anomalous transient superdiffusive behavior crossing over to slow logarithmic dynamics at later times.\r\nThis work suggests that particle conserving constrained models with inversion-symmetry breaking realize new universality classes of dynamics and invite their further theoretical and experimental studies.\r\n\r\nNext, we use kinetic constraints and disorder to design a model with many-body mobility edges in particle density.\r\nThis feature allows to study the dynamics of localized and thermal states in large systems beyond the limitations of previous studies.\r\nThe time-evolution shows typical signatures of localization at small densities, replaced by thermal behavior at larger densities.\r\nOur results provide evidence in favor of the stability of many-body mobility edges, which was recently challenged by a theoretical argument.\r\nTo support our findings, we probe the mechanism proposed as a cause of delocalization in many-body localized systems with mobility edges suggesting its ineffectiveness in the model studied.\r\n\r\nIn the last Chapter of this Thesis, we address the topic of many-body localization proximity effect.\r\nWe study a model inspired by recent experiments, featuring Anderson localized coupled to a small bath of free hard-core bosons.\r\nThe interaction among the two particle species results in non-trivial dynamics, which we probe using tensor network techniques.\r\nOur simulations show convincing evidence of many-body localization proximity effect when the bath is composed by a single free particle and interactions are strong.\r\nWe furthter observe an anomalous entanglement dynamics, which we explain through a phenomenological theory.\r\nFinally, we extract highly excited eigenstates of large systems, providing supplementary evidence in favor of our findings."}],"citation":{"ama":"Brighi P. Ergodicity breaking in disordered and kinetically constrained quantum many-body systems. 2023. doi:10.15479/at:ista:12732","ista":"Brighi P. 2023. Ergodicity breaking in disordered and kinetically constrained quantum many-body systems. Institute of Science and Technology Austria.","apa":"Brighi, P. (2023). Ergodicity breaking in disordered and kinetically constrained quantum many-body systems. Institute of Science and Technology Austria. https://doi.org/10.15479/at:ista:12732","ieee":"P. Brighi, “Ergodicity breaking in disordered and kinetically constrained quantum many-body systems,” Institute of Science and Technology Austria, 2023.","mla":"Brighi, Pietro. Ergodicity Breaking in Disordered and Kinetically Constrained Quantum Many-Body Systems. Institute of Science and Technology Austria, 2023, doi:10.15479/at:ista:12732.","short":"P. Brighi, Ergodicity Breaking in Disordered and Kinetically Constrained Quantum Many-Body Systems, Institute of Science and Technology Austria, 2023.","chicago":"Brighi, Pietro. “Ergodicity Breaking in Disordered and Kinetically Constrained Quantum Many-Body Systems.” Institute of Science and Technology Austria, 2023. https://doi.org/10.15479/at:ista:12732."},"page":"158","date_published":"2023-03-21T00:00:00Z","has_accepted_license":"1","article_processing_charge":"No","day":"21","year":"2023","department":[{"_id":"GradSch"},{"_id":"MaSe"}],"publisher":"Institute of Science and Technology Austria","publication_status":"published","related_material":{"record":[{"id":"11470","relation":"part_of_dissertation","status":"public"},{"relation":"part_of_dissertation","status":"public","id":"8308"},{"id":"11469","relation":"part_of_dissertation","status":"public"},{"relation":"part_of_dissertation","status":"public","id":"12750"}]},"author":[{"last_name":"Brighi","first_name":"Pietro","orcid":"0000-0002-7969-2729","id":"4115AF5C-F248-11E8-B48F-1D18A9856A87","full_name":"Brighi, Pietro"}],"date_updated":"2023-09-20T10:44:12Z","date_created":"2023-03-17T13:30:48Z","ec_funded":1,"file_date_updated":"2023-03-23T16:43:14Z","tmp":{"name":"Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode","image":"/images/cc_by_nc_sa.png","short":"CC BY-NC-SA (4.0)"},"oa":1,"project":[{"grant_number":"850899","_id":"23841C26-32DE-11EA-91FC-C7463DDC885E","name":"Non-Ergodic Quantum Matter: Universality, Dynamics and Control","call_identifier":"H2020"}],"doi":"10.15479/at:ista:12732","language":[{"iso":"eng"}],"supervisor":[{"id":"47809E7E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2399-5827","first_name":"Maksym","last_name":"Serbyn","full_name":"Serbyn, Maksym"}],"acknowledged_ssus":[{"_id":"ScienComp"}],"degree_awarded":"PhD","publication_identifier":{"issn":["2663-337X"]},"month":"03"},{"acknowledgement":"We would like to thank Raimel A. Medina, Hansveer Singh, and Dmitry Abanin for useful\r\ndiscussions.The authors acknowledge support by the European Research Council\r\n(ERC) under the European Union’s Horizon 2020 research and innovation program (Grant\r\nAgreement No. 850899). We acknowledge support by the Erwin Schrödinger International\r\nInstitute for Mathematics and Physics (ESI).","year":"2023","publication_status":"published","department":[{"_id":"MaSe"}],"publisher":"SciPost Foundation","author":[{"full_name":"Brighi, Pietro","first_name":"Pietro","last_name":"Brighi","id":"4115AF5C-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-7969-2729"},{"last_name":"Ljubotina","first_name":"Marko","orcid":"0000-0003-0038-7068","id":"F75EE9BE-5C90-11EA-905D-16643DDC885E","full_name":"Ljubotina, Marko"},{"full_name":"Serbyn, Maksym","first_name":"Maksym","last_name":"Serbyn","id":"47809E7E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2399-5827"}],"related_material":{"record":[{"status":"public","relation":"earlier_version","id":"12750"}]},"date_updated":"2023-09-20T10:46:29Z","date_created":"2023-09-14T13:08:23Z","volume":15,"article_number":"093","file_date_updated":"2023-09-20T10:46:10Z","ec_funded":1,"external_id":{"arxiv":["2210.15607"]},"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"quality_controlled":"1","project":[{"call_identifier":"H2020","name":"Non-Ergodic Quantum Matter: Universality, Dynamics and Control","grant_number":"850899","_id":"23841C26-32DE-11EA-91FC-C7463DDC885E"}],"doi":"10.21468/scipostphys.15.3.093","language":[{"iso":"eng"}],"month":"09","publication_identifier":{"issn":["2542-4653"]},"_id":"14334","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","ddc":["530"],"title":"Hilbert space fragmentation and slow dynamics in particle-conserving quantum East models","intvolume":" 15","file":[{"success":1,"checksum":"4cef6a8021f6b6c47ab2f2f2b1387ac2","date_updated":"2023-09-20T10:46:10Z","date_created":"2023-09-20T10:46:10Z","file_id":"14350","relation":"main_file","creator":"dernst","file_size":4866506,"content_type":"application/pdf","access_level":"open_access","file_name":"2023_SciPostPhysics_Brighi.pdf"}],"oa_version":"Published Version","type":"journal_article","abstract":[{"lang":"eng","text":"Quantum kinetically constrained models have recently attracted significant attention due to their anomalous dynamics and thermalization. In this work, we introduce a hitherto unexplored family of kinetically constrained models featuring conserved particle number and strong inversion-symmetry breaking due to facilitated hopping. We demonstrate that these models provide a generic example of so-called quantum Hilbert space fragmentation, that is manifested in disconnected sectors in the Hilbert space that are not apparent in the computational basis. Quantum Hilbert space fragmentation leads to an exponential in system size number of eigenstates with exactly zero entanglement entropy across several bipartite cuts. These eigenstates can be probed dynamically using quenches from simple initial product states. In addition, we study the particle spreading under unitary dynamics launched from the domain wall state, and find faster than diffusive dynamics at high particle densities, that crosses over into logarithmically slow relaxation at smaller densities. Using a classically simulable cellular automaton, we reproduce the logarithmic dynamics observed in the quantum case. Our work suggests that particle conserving constrained models with inversion symmetry breaking realize so far unexplored dynamical behavior and invite their further theoretical and experimental studies."}],"issue":"3","publication":"SciPost Physics","citation":{"ama":"Brighi P, Ljubotina M, Serbyn M. Hilbert space fragmentation and slow dynamics in particle-conserving quantum East models. SciPost Physics. 2023;15(3). doi:10.21468/scipostphys.15.3.093","ista":"Brighi P, Ljubotina M, Serbyn M. 2023. Hilbert space fragmentation and slow dynamics in particle-conserving quantum East models. SciPost Physics. 15(3), 093.","apa":"Brighi, P., Ljubotina, M., & Serbyn, M. (2023). Hilbert space fragmentation and slow dynamics in particle-conserving quantum East models. SciPost Physics. SciPost Foundation. https://doi.org/10.21468/scipostphys.15.3.093","ieee":"P. Brighi, M. Ljubotina, and M. Serbyn, “Hilbert space fragmentation and slow dynamics in particle-conserving quantum East models,” SciPost Physics, vol. 15, no. 3. SciPost Foundation, 2023.","mla":"Brighi, Pietro, et al. “Hilbert Space Fragmentation and Slow Dynamics in Particle-Conserving Quantum East Models.” SciPost Physics, vol. 15, no. 3, 093, SciPost Foundation, 2023, doi:10.21468/scipostphys.15.3.093.","short":"P. Brighi, M. Ljubotina, M. Serbyn, SciPost Physics 15 (2023).","chicago":"Brighi, Pietro, Marko Ljubotina, and Maksym Serbyn. “Hilbert Space Fragmentation and Slow Dynamics in Particle-Conserving Quantum East Models.” SciPost Physics. SciPost Foundation, 2023. https://doi.org/10.21468/scipostphys.15.3.093."},"article_type":"original","date_published":"2023-09-13T00:00:00Z","keyword":["General Physics and Astronomy"],"day":"13","article_processing_charge":"No","has_accepted_license":"1"},{"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"14321","intvolume":" 159","title":"Achiral dipoles on a ferromagnet can affect its magnetization direction","status":"public","ddc":["530"],"file":[{"access_level":"open_access","file_name":"104103_1_5.0165806.pdf","creator":"acappell","content_type":"application/pdf","file_size":5749653,"file_id":"14322","relation":"main_file","success":1,"checksum":"507ab65ab29e2c987c94cabad7c5370b","date_updated":"2023-09-13T09:34:20Z","date_created":"2023-09-13T09:34:20Z"}],"oa_version":"Published Version","type":"journal_article","issue":"10","abstract":[{"text":"We demonstrate the possibility of a coupling between the magnetization direction of a ferromagnet and the tilting angle of adsorbed achiral molecules. To illustrate the mechanism of the coupling, we analyze a minimal Stoner model that includes Rashba spin–orbit coupling due to the electric field on the surface of the ferromagnet. The proposed mechanism allows us to study magnetic anisotropy of the system with an extended Stoner–Wohlfarth model and argue that adsorbed achiral molecules can change magnetocrystalline anisotropy of the substrate. Our research aims to motivate further experimental studies of the current-free chirality induced spin selectivity effect involving both enantiomers.","lang":"eng"}],"citation":{"mla":"Al Hyder, Ragheed, et al. “Achiral Dipoles on a Ferromagnet Can Affect Its Magnetization Direction.” The Journal of Chemical Physics, vol. 159, no. 10, 104103, AIP Publishing, 2023, doi:10.1063/5.0165806.","short":"R. Al Hyder, A. Cappellaro, M. Lemeshko, A. Volosniev, The Journal of Chemical Physics 159 (2023).","chicago":"Al Hyder, Ragheed, Alberto Cappellaro, Mikhail Lemeshko, and Artem Volosniev. “Achiral Dipoles on a Ferromagnet Can Affect Its Magnetization Direction.” The Journal of Chemical Physics. AIP Publishing, 2023. https://doi.org/10.1063/5.0165806.","ama":"Al Hyder R, Cappellaro A, Lemeshko M, Volosniev A. Achiral dipoles on a ferromagnet can affect its magnetization direction. The Journal of Chemical Physics. 2023;159(10). doi:10.1063/5.0165806","ista":"Al Hyder R, Cappellaro A, Lemeshko M, Volosniev A. 2023. Achiral dipoles on a ferromagnet can affect its magnetization direction. The Journal of Chemical Physics. 159(10), 104103.","ieee":"R. Al Hyder, A. Cappellaro, M. Lemeshko, and A. Volosniev, “Achiral dipoles on a ferromagnet can affect its magnetization direction,” The Journal of Chemical Physics, vol. 159, no. 10. AIP Publishing, 2023.","apa":"Al Hyder, R., Cappellaro, A., Lemeshko, M., & Volosniev, A. (2023). Achiral dipoles on a ferromagnet can affect its magnetization direction. The Journal of Chemical Physics. AIP Publishing. https://doi.org/10.1063/5.0165806"},"publication":"The Journal of Chemical Physics","article_type":"original","date_published":"2023-09-11T00:00:00Z","scopus_import":"1","keyword":["Physical and Theoretical Chemistry","General Physics and Astronomy"],"has_accepted_license":"1","article_processing_charge":"Yes (in subscription journal)","day":"11","pmid":1,"acknowledgement":"We thank Zhanybek Alpichshev, Mohammad Reza Safari, Binghai Yan, and Yossi Paltiel for enlightening discussions.\r\nM.L. acknowledges support from the European Research Council (ERC) Starting Grant No. 801770 (ANGULON). A. C. received funding from the European Union’s Horizon Europe research and innovation program under the Marie Skłodowska-Curie Grant Agreement No. 101062862 - NeqMolRot.","year":"2023","department":[{"_id":"MiLe"}],"publisher":"AIP Publishing","publication_status":"published","author":[{"id":"d1c405be-ae15-11ed-8510-ccf53278162e","last_name":"Al Hyder","first_name":"Ragheed","full_name":"Al Hyder, Ragheed"},{"id":"9d13b3cb-30a2-11eb-80dc-f772505e8660","orcid":"0000-0001-6110-2359","first_name":"Alberto","last_name":"Cappellaro","full_name":"Cappellaro, Alberto"},{"full_name":"Lemeshko, Mikhail","orcid":"0000-0002-6990-7802","id":"37CB05FA-F248-11E8-B48F-1D18A9856A87","last_name":"Lemeshko","first_name":"Mikhail"},{"first_name":"Artem","last_name":"Volosniev","id":"37D278BC-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-0393-5525","full_name":"Volosniev, Artem"}],"volume":159,"date_updated":"2023-09-20T09:48:12Z","date_created":"2023-09-13T09:25:09Z","article_number":"104103","ec_funded":1,"file_date_updated":"2023-09-13T09:34:20Z","oa":1,"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"pmid":["37694742"],"arxiv":["2306.17592"]},"project":[{"name":"Non-equilibrium Field Theory of Molecular Rotations","grant_number":"101062862","_id":"bd7b5202-d553-11ed-ba76-9b1c1b258338"},{"grant_number":"801770","_id":"2688CF98-B435-11E9-9278-68D0E5697425","name":"Angulon: physics and applications of a new quasiparticle","call_identifier":"H2020"}],"quality_controlled":"1","doi":"10.1063/5.0165806","language":[{"iso":"eng"}],"publication_identifier":{"issn":["0021-9606"],"eissn":["1089-7690"]},"month":"09"},{"publication_identifier":{"issn":["0003-6951"]},"month":"08","oa":1,"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"arxiv":["2306.09043"]},"quality_controlled":"1","doi":"10.1063/5.0161713","language":[{"iso":"eng"}],"article_number":"091104","file_date_updated":"2023-09-20T11:36:16Z","year":"2023","acknowledgement":"The work was supported by IST Austria. The authors would like to gratefully acknowledge the help and assistance of Professor John M. Dudley.","publisher":"AIP Publishing","department":[{"_id":"ZhAl"}],"publication_status":"published","author":[{"first_name":"Dusan","last_name":"Lorenc","id":"40D8A3E6-F248-11E8-B48F-1D18A9856A87","full_name":"Lorenc, Dusan"},{"last_name":"Alpichshev","first_name":"Zhanybek","orcid":"0000-0002-7183-5203","id":"45E67A2A-F248-11E8-B48F-1D18A9856A87","full_name":"Alpichshev, Zhanybek"}],"volume":123,"date_updated":"2023-09-20T11:50:06Z","date_created":"2023-09-17T22:01:09Z","scopus_import":"1","article_processing_charge":"Yes (in subscription journal)","has_accepted_license":"1","day":"28","citation":{"mla":"Lorenc, Dusan, and Zhanybek Alpichshev. “Mid-Infrared Kerr Index Evaluation via Cross-Phase Modulation with a near-Infrared Probe Beam.” Applied Physics Letters, vol. 123, no. 9, 091104, AIP Publishing, 2023, doi:10.1063/5.0161713.","short":"D. Lorenc, Z. Alpichshev, Applied Physics Letters 123 (2023).","chicago":"Lorenc, Dusan, and Zhanybek Alpichshev. “Mid-Infrared Kerr Index Evaluation via Cross-Phase Modulation with a near-Infrared Probe Beam.” Applied Physics Letters. AIP Publishing, 2023. https://doi.org/10.1063/5.0161713.","ama":"Lorenc D, Alpichshev Z. Mid-infrared Kerr index evaluation via cross-phase modulation with a near-infrared probe beam. Applied Physics Letters. 2023;123(9). doi:10.1063/5.0161713","ista":"Lorenc D, Alpichshev Z. 2023. Mid-infrared Kerr index evaluation via cross-phase modulation with a near-infrared probe beam. Applied Physics Letters. 123(9), 091104.","apa":"Lorenc, D., & Alpichshev, Z. (2023). Mid-infrared Kerr index evaluation via cross-phase modulation with a near-infrared probe beam. Applied Physics Letters. AIP Publishing. https://doi.org/10.1063/5.0161713","ieee":"D. Lorenc and Z. Alpichshev, “Mid-infrared Kerr index evaluation via cross-phase modulation with a near-infrared probe beam,” Applied Physics Letters, vol. 123, no. 9. AIP Publishing, 2023."},"publication":"Applied Physics Letters","article_type":"original","date_published":"2023-08-28T00:00:00Z","type":"journal_article","issue":"9","abstract":[{"text":"We propose a simple method to measure nonlinear Kerr refractive index in mid-infrared frequency range that avoids using sophisticated infrared detectors. Our approach is based on using a near-infrared probe beam which interacts with a mid-IR beam via wavelength-non-degenerate cross-phase modulation (XPM). By carefully measuring XPM-induced spectral modifications in the probe beam and comparing the experimental data with simulation results, we extract the value for the non-degenerate Kerr index. Finally, in order to obtain the value of degenerate mid-IR Kerr index, we use the well-established two-band formalism of Sheik-Bahae et al., which is shown to become particularly simple in the limit of low frequencies. The proposed technique is complementary to the conventional techniques, such as z-scan, and has the advantage of not requiring any mid-infrared detectors.","lang":"eng"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"14342","intvolume":" 123","ddc":["530"],"status":"public","title":"Mid-infrared Kerr index evaluation via cross-phase modulation with a near-infrared probe beam","file":[{"date_created":"2023-09-20T11:36:16Z","date_updated":"2023-09-20T11:36:16Z","success":1,"checksum":"89a1b604d58b209fec66c6b6f919ac98","file_id":"14353","relation":"main_file","creator":"dernst","file_size":1486715,"content_type":"application/pdf","file_name":"2023_ApplPhysLetter_Lorenc.pdf","access_level":"open_access"}],"oa_version":"Published Version"},{"doi":"10.1038/s41586-023-06399-5","language":[{"iso":"eng"}],"acknowledged_ssus":[{"_id":"M-Shop"},{"_id":"ScienComp"}],"external_id":{"pmid":["37673988"]},"project":[{"name":"Revisiting the Turbulence Problem Using Statistical Mechanics: Experimental Studies on Transitional and Turbulent Flows","grant_number":"662960","_id":"238598C6-32DE-11EA-91FC-C7463DDC885E"},{"_id":"238B8092-32DE-11EA-91FC-C7463DDC885E","grant_number":"I04188","name":"Instabilities in pulsating pipe flow of Newtonian and complex fluids","call_identifier":"FWF"}],"quality_controlled":"1","publication_identifier":{"issn":["0028-0836"],"eissn":["1476-4687"]},"month":"09","related_material":{"link":[{"url":"https://www.ista.ac.at/en/news/pumping-like-the-heart/","relation":"press_release","description":"News on ISTA website"}]},"author":[{"id":"40315C30-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5227-4271","first_name":"Davide","last_name":"Scarselli","full_name":"Scarselli, Davide"},{"full_name":"Lopez Alonso, Jose M","last_name":"Lopez Alonso","first_name":"Jose M","orcid":"0000-0002-0384-2022","id":"40770848-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Varshney, Atul","id":"2A2006B2-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-3072-5999","first_name":"Atul","last_name":"Varshney"},{"id":"3A374330-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-2057-2754","first_name":"Björn","last_name":"Hof","full_name":"Hof, Björn"}],"volume":621,"date_created":"2023-09-17T22:01:09Z","date_updated":"2023-09-20T12:10:22Z","pmid":1,"year":"2023","acknowledgement":"We acknowledge the assistance of the Miba machine shop and the team of the ISTA-HPC cluster. We thank M. Quadrio for the discussions. The work was supported by the Simons Foundation (grant no. 662960) and by the Austrian Science Fund (grant no. I4188-N30), within Deutsche Forschungsgemeinschaft research unit FOR 2688.","publisher":"Springer Nature","department":[{"_id":"BjHo"}],"publication_status":"published","date_published":"2023-09-07T00:00:00Z","citation":{"ama":"Scarselli D, Lopez Alonso JM, Varshney A, Hof B. Turbulence suppression by cardiac-cycle-inspired driving of pipe flow. Nature. 2023;621(7977):71-74. doi:10.1038/s41586-023-06399-5","ista":"Scarselli D, Lopez Alonso JM, Varshney A, Hof B. 2023. Turbulence suppression by cardiac-cycle-inspired driving of pipe flow. Nature. 621(7977), 71–74.","ieee":"D. Scarselli, J. M. Lopez Alonso, A. Varshney, and B. Hof, “Turbulence suppression by cardiac-cycle-inspired driving of pipe flow,” Nature, vol. 621, no. 7977. Springer Nature, pp. 71–74, 2023.","apa":"Scarselli, D., Lopez Alonso, J. M., Varshney, A., & Hof, B. (2023). Turbulence suppression by cardiac-cycle-inspired driving of pipe flow. Nature. Springer Nature. https://doi.org/10.1038/s41586-023-06399-5","mla":"Scarselli, Davide, et al. “Turbulence Suppression by Cardiac-Cycle-Inspired Driving of Pipe Flow.” Nature, vol. 621, no. 7977, Springer Nature, 2023, pp. 71–74, doi:10.1038/s41586-023-06399-5.","short":"D. Scarselli, J.M. Lopez Alonso, A. Varshney, B. Hof, Nature 621 (2023) 71–74.","chicago":"Scarselli, Davide, Jose M Lopez Alonso, Atul Varshney, and Björn Hof. “Turbulence Suppression by Cardiac-Cycle-Inspired Driving of Pipe Flow.” Nature. Springer Nature, 2023. https://doi.org/10.1038/s41586-023-06399-5."},"publication":"Nature","page":"71-74","article_type":"original","article_processing_charge":"No","day":"07","scopus_import":"1","oa_version":"None","_id":"14341","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","intvolume":" 621","title":"Turbulence suppression by cardiac-cycle-inspired driving of pipe flow","status":"public","issue":"7977","abstract":[{"lang":"eng","text":"Flows through pipes and channels are, in practice, almost always turbulent, and the multiscale eddying motion is responsible for a major part of the encountered friction losses and pumping costs1. Conversely, for pulsatile flows, in particular for aortic blood flow, turbulence levels remain low despite relatively large peak velocities. For aortic blood flow, high turbulence levels are intolerable as they would damage the shear-sensitive endothelial cell layer2,3,4,5. Here we show that turbulence in ordinary pipe flow is diminished if the flow is driven in a pulsatile mode that incorporates all the key features of the cardiac waveform. At Reynolds numbers comparable to those of aortic blood flow, turbulence is largely inhibited, whereas at much higher speeds, the turbulent drag is reduced by more than 25%. This specific operation mode is more efficient when compared with steady driving, which is the present situation for virtually all fluid transport processes ranging from heating circuits to water, gas and oil pipelines."}],"type":"journal_article"},{"month":"11","publication_identifier":{"issn":["1098-3600"]},"quality_controlled":"1","oa":1,"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"language":[{"iso":"eng"}],"doi":"10.1016/j.gim.2023.100938","article_number":"100938","extern":"1","file_date_updated":"2023-09-25T08:48:54Z","publication_status":"published","publisher":"Elsevier","year":"2023","date_updated":"2023-09-25T08:50:10Z","date_created":"2023-09-25T08:44:29Z","volume":25,"author":[{"full_name":"Accogli, Andrea","first_name":"Andrea","last_name":"Accogli"},{"full_name":"Lin, Sheng-Jia","last_name":"Lin","first_name":"Sheng-Jia"},{"full_name":"Severino, Mariasavina","last_name":"Severino","first_name":"Mariasavina"},{"full_name":"Kim, Sung-Hoon","last_name":"Kim","first_name":"Sung-Hoon"},{"full_name":"Huang, Kevin","first_name":"Kevin","last_name":"Huang","id":"3b3d2888-1ff6-11ee-9fa6-8f209ca91fe3","orcid":"0000-0002-2512-7812"},{"full_name":"Rocca, Clarissa","last_name":"Rocca","first_name":"Clarissa"},{"last_name":"Landsverk","first_name":"Megan","full_name":"Landsverk, Megan"},{"last_name":"Zaki","first_name":"Maha S.","full_name":"Zaki, Maha S."},{"first_name":"Almundher","last_name":"Al-Maawali","full_name":"Al-Maawali, Almundher"},{"first_name":"Varunvenkat M.","last_name":"Srinivasan","full_name":"Srinivasan, Varunvenkat M."},{"first_name":"Khalid","last_name":"Al-Thihli","full_name":"Al-Thihli, Khalid"},{"last_name":"Schaefer","first_name":"G. Bradly","full_name":"Schaefer, G. Bradly"},{"last_name":"Davis","first_name":"Monica","full_name":"Davis, Monica"},{"first_name":"Davide","last_name":"Tonduti","full_name":"Tonduti, Davide"},{"first_name":"Chiara","last_name":"Doneda","full_name":"Doneda, Chiara"},{"first_name":"Lara M.","last_name":"Marten","full_name":"Marten, Lara M."},{"full_name":"Mühlhausen, Chris","first_name":"Chris","last_name":"Mühlhausen"},{"first_name":"Maria","last_name":"Gomez","full_name":"Gomez, Maria"},{"full_name":"Lamantea, Eleonora","last_name":"Lamantea","first_name":"Eleonora"},{"first_name":"Rafael","last_name":"Mena","full_name":"Mena, Rafael"},{"first_name":"Mathilde","last_name":"Nizon","full_name":"Nizon, Mathilde"},{"full_name":"Procaccio, Vincent","last_name":"Procaccio","first_name":"Vincent"},{"first_name":"Amber","last_name":"Begtrup","full_name":"Begtrup, Amber"},{"first_name":"Aida","last_name":"Telegrafi","full_name":"Telegrafi, Aida"},{"first_name":"Hong","last_name":"Cui","full_name":"Cui, Hong"},{"last_name":"Schulz","first_name":"Heidi L.","full_name":"Schulz, Heidi L."},{"full_name":"Mohr, Julia","first_name":"Julia","last_name":"Mohr"},{"last_name":"Biskup","first_name":"Saskia","full_name":"Biskup, Saskia"},{"full_name":"Loos, Mariana Amina","first_name":"Mariana Amina","last_name":"Loos"},{"last_name":"Aráoz","first_name":"Hilda Verónica","full_name":"Aráoz, Hilda Verónica"},{"last_name":"Salpietro","first_name":"Vincenzo","full_name":"Salpietro, Vincenzo"},{"full_name":"Keppen, Laura Davis","first_name":"Laura Davis","last_name":"Keppen"},{"last_name":"Chitre","first_name":"Manali","full_name":"Chitre, Manali"},{"full_name":"Petree, Cassidy","first_name":"Cassidy","last_name":"Petree"},{"first_name":"Lucy","last_name":"Raymond","full_name":"Raymond, Lucy"},{"full_name":"Vogt, Julie","first_name":"Julie","last_name":"Vogt"},{"full_name":"Sawyer, Lindsey B.","first_name":"Lindsey B.","last_name":"Sawyer"},{"full_name":"Basinger, Alice A.","first_name":"Alice A.","last_name":"Basinger"},{"last_name":"Pedersen","first_name":"Signe Vandal","full_name":"Pedersen, Signe Vandal"},{"first_name":"Toni S.","last_name":"Pearson","full_name":"Pearson, Toni S."},{"full_name":"Grange, Dorothy K.","first_name":"Dorothy K.","last_name":"Grange"},{"first_name":"Lokesh","last_name":"Lingappa","full_name":"Lingappa, Lokesh"},{"full_name":"McDunnah, Paige","first_name":"Paige","last_name":"McDunnah"},{"first_name":"Rita","last_name":"Horvath","full_name":"Horvath, Rita"},{"full_name":"Cognè, Benjamin","first_name":"Benjamin","last_name":"Cognè"},{"last_name":"Isidor","first_name":"Bertrand","full_name":"Isidor, Bertrand"},{"last_name":"Hahn","first_name":"Andreas","full_name":"Hahn, Andreas"},{"full_name":"Gripp, Karen W.","first_name":"Karen W.","last_name":"Gripp"},{"full_name":"Jafarnejad, Seyed Mehdi","last_name":"Jafarnejad","first_name":"Seyed Mehdi"},{"full_name":"Østergaard, Elsebet","last_name":"Østergaard","first_name":"Elsebet"},{"full_name":"Prada, Carlos E.","last_name":"Prada","first_name":"Carlos E."},{"last_name":"Ghezzi","first_name":"Daniele","full_name":"Ghezzi, Daniele"},{"full_name":"Gowda, Vykuntaraju K.","last_name":"Gowda","first_name":"Vykuntaraju K."},{"full_name":"Taylor, Robert W.","first_name":"Robert W.","last_name":"Taylor"},{"last_name":"Sonenberg","first_name":"Nahum","full_name":"Sonenberg, Nahum"},{"last_name":"Houlden","first_name":"Henry","full_name":"Houlden, Henry"},{"last_name":"Sissler","first_name":"Marie","full_name":"Sissler, Marie"},{"full_name":"Varshney, Gaurav K.","last_name":"Varshney","first_name":"Gaurav K."},{"full_name":"Maroofian, Reza","first_name":"Reza","last_name":"Maroofian"}],"keyword":["Genetics (clinical)"],"scopus_import":"1","day":"01","has_accepted_license":"1","article_processing_charge":"No","article_type":"original","publication":"Genetics in Medicine","citation":{"mla":"Accogli, Andrea, et al. “Clinical, Neuroradiological, and Molecular Characterization of Mitochondrial Threonyl-TRNA-Synthetase (TARS2)-Related Disorder.” Genetics in Medicine, vol. 25, no. 11, 100938, Elsevier, 2023, doi:10.1016/j.gim.2023.100938.","short":"A. Accogli, S.-J. Lin, M. Severino, S.-H. Kim, K. Huang, C. Rocca, M. Landsverk, M.S. Zaki, A. Al-Maawali, V.M. Srinivasan, K. Al-Thihli, G.B. Schaefer, M. Davis, D. Tonduti, C. Doneda, L.M. Marten, C. Mühlhausen, M. Gomez, E. Lamantea, R. Mena, M. Nizon, V. Procaccio, A. Begtrup, A. Telegrafi, H. Cui, H.L. Schulz, J. Mohr, S. Biskup, M.A. Loos, H.V. Aráoz, V. Salpietro, L.D. Keppen, M. Chitre, C. Petree, L. Raymond, J. Vogt, L.B. Sawyer, A.A. Basinger, S.V. Pedersen, T.S. Pearson, D.K. Grange, L. Lingappa, P. McDunnah, R. Horvath, B. Cognè, B. Isidor, A. Hahn, K.W. Gripp, S.M. Jafarnejad, E. Østergaard, C.E. Prada, D. Ghezzi, V.K. Gowda, R.W. Taylor, N. Sonenberg, H. Houlden, M. Sissler, G.K. Varshney, R. Maroofian, Genetics in Medicine 25 (2023).","chicago":"Accogli, Andrea, Sheng-Jia Lin, Mariasavina Severino, Sung-Hoon Kim, Kevin Huang, Clarissa Rocca, Megan Landsverk, et al. “Clinical, Neuroradiological, and Molecular Characterization of Mitochondrial Threonyl-TRNA-Synthetase (TARS2)-Related Disorder.” Genetics in Medicine. Elsevier, 2023. https://doi.org/10.1016/j.gim.2023.100938.","ama":"Accogli A, Lin S-J, Severino M, et al. Clinical, neuroradiological, and molecular characterization of mitochondrial threonyl-tRNA-synthetase (TARS2)-related disorder. Genetics in Medicine. 2023;25(11). doi:10.1016/j.gim.2023.100938","ista":"Accogli A, Lin S-J, Severino M, Kim S-H, Huang K, Rocca C, Landsverk M, Zaki MS, Al-Maawali A, Srinivasan VM, Al-Thihli K, Schaefer GB, Davis M, Tonduti D, Doneda C, Marten LM, Mühlhausen C, Gomez M, Lamantea E, Mena R, Nizon M, Procaccio V, Begtrup A, Telegrafi A, Cui H, Schulz HL, Mohr J, Biskup S, Loos MA, Aráoz HV, Salpietro V, Keppen LD, Chitre M, Petree C, Raymond L, Vogt J, Sawyer LB, Basinger AA, Pedersen SV, Pearson TS, Grange DK, Lingappa L, McDunnah P, Horvath R, Cognè B, Isidor B, Hahn A, Gripp KW, Jafarnejad SM, Østergaard E, Prada CE, Ghezzi D, Gowda VK, Taylor RW, Sonenberg N, Houlden H, Sissler M, Varshney GK, Maroofian R. 2023. Clinical, neuroradiological, and molecular characterization of mitochondrial threonyl-tRNA-synthetase (TARS2)-related disorder. Genetics in Medicine. 25(11), 100938.","ieee":"A. Accogli et al., “Clinical, neuroradiological, and molecular characterization of mitochondrial threonyl-tRNA-synthetase (TARS2)-related disorder,” Genetics in Medicine, vol. 25, no. 11. Elsevier, 2023.","apa":"Accogli, A., Lin, S.-J., Severino, M., Kim, S.-H., Huang, K., Rocca, C., … Maroofian, R. (2023). Clinical, neuroradiological, and molecular characterization of mitochondrial threonyl-tRNA-synthetase (TARS2)-related disorder. Genetics in Medicine. Elsevier. https://doi.org/10.1016/j.gim.2023.100938"},"date_published":"2023-11-01T00:00:00Z","type":"journal_article","abstract":[{"text":"Purpose: \r\nBiallelic variants in TARS2, encoding the mitochondrial threonyl-tRNA-synthetase, have been reported in a small group of individuals displaying a neurodevelopmental phenotype but with limited neuroradiological data and insufficient evidence for causality of the variants.\r\nMethods:\r\nExome or genome sequencing was carried out in 15 families. Clinical and neuroradiological evaluation was performed for all affected individuals, including review of 10 previously reported individuals. The pathogenicity of TARS2 variants was evaluated using in vitro assays and a zebrafish model.\r\nResults:\r\nWe report 18 new individuals harboring biallelic TARS2 variants. Phenotypically, these individuals show developmental delay/intellectual disability, regression, cerebellar and cerebral atrophy, basal ganglia signal alterations, hypotonia, cerebellar signs, and increased blood lactate. In vitro studies showed that variants within the TARS2301-381 region had decreased binding to Rag GTPases, likely impairing mTORC1 activity. The zebrafish model recapitulated key features of the human phenotype and unraveled dysregulation of downstream targets of mTORC1 signaling. Functional testing of the variants confirmed the pathogenicity in a zebrafish model.\r\nConclusion:\r\nWe define the clinico-radiological spectrum of TARS2-related mitochondrial disease, unveil the likely involvement of the mTORC1 signaling pathway as a distinct molecular mechanism, and establish a TARS2 zebrafish model as an important tool to study variant pathogenicity.","lang":"eng"}],"issue":"11","ddc":["570"],"title":"Clinical, neuroradiological, and molecular characterization of mitochondrial threonyl-tRNA-synthetase (TARS2)-related disorder","status":"public","intvolume":" 25","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"14368","file":[{"content_type":"application/pdf","file_size":4105513,"creator":"dernst","file_name":"2023_GeneticsMedicine_Accogli.pdf","access_level":"open_access","date_updated":"2023-09-25T08:48:54Z","date_created":"2023-09-25T08:48:54Z","checksum":"440f0cd8a2ffcbe03c015c1746728387","success":1,"relation":"main_file","file_id":"14369"}],"oa_version":"Published Version"},{"scopus_import":"1","has_accepted_license":"1","article_processing_charge":"No","day":"27","citation":{"ista":"Dvorak M, Blanchette J. 2023. Closure properties of general grammars - formally verified. 14th International Conference on Interactive Theorem Proving. ITP: International Conference on Interactive Theorem Proving, LIPIcs, vol. 268, 15.","ieee":"M. Dvorak and J. Blanchette, “Closure properties of general grammars - formally verified,” in 14th International Conference on Interactive Theorem Proving, Bialystok, Poland, 2023, vol. 268.","apa":"Dvorak, M., & Blanchette, J. (2023). Closure properties of general grammars - formally verified. In 14th International Conference on Interactive Theorem Proving (Vol. 268). Bialystok, Poland: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. https://doi.org/10.4230/LIPIcs.ITP.2023.15","ama":"Dvorak M, Blanchette J. Closure properties of general grammars - formally verified. In: 14th International Conference on Interactive Theorem Proving. Vol 268. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2023. doi:10.4230/LIPIcs.ITP.2023.15","chicago":"Dvorak, Martin, and Jasmin Blanchette. “Closure Properties of General Grammars - Formally Verified.” In 14th International Conference on Interactive Theorem Proving, Vol. 268. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023. https://doi.org/10.4230/LIPIcs.ITP.2023.15.","mla":"Dvorak, Martin, and Jasmin Blanchette. “Closure Properties of General Grammars - Formally Verified.” 14th International Conference on Interactive Theorem Proving, vol. 268, 15, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023, doi:10.4230/LIPIcs.ITP.2023.15.","short":"M. Dvorak, J. Blanchette, in:, 14th International Conference on Interactive Theorem Proving, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023."},"publication":"14th International Conference on Interactive Theorem Proving","date_published":"2023-07-27T00:00:00Z","type":"conference","alternative_title":["LIPIcs"],"abstract":[{"text":"We formalized general (i.e., type-0) grammars using the Lean 3 proof assistant. We defined basic notions of rewrite rules and of words derived by a grammar, and used grammars to show closure of the class of type-0 languages under four operations: union, reversal, concatenation, and the Kleene star. The literature mostly focuses on Turing machine arguments, which are possibly more difficult to formalize. For the Kleene star, we could not follow the literature and came up with our own grammar-based construction.","lang":"eng"}],"_id":"13120","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","intvolume":" 268","title":"Closure properties of general grammars - formally verified","status":"public","ddc":["000"],"file":[{"checksum":"773a0197f05b67feaa6cb1e17ec3642d","success":1,"date_created":"2023-08-07T11:55:43Z","date_updated":"2023-08-07T11:55:43Z","relation":"main_file","file_id":"13982","content_type":"application/pdf","file_size":715976,"creator":"dernst","access_level":"open_access","file_name":"2023_LIPIcS_Dvorak.pdf"}],"oa_version":"Published Version","publication_identifier":{"eissn":["1868-8969"],"isbn":["9783959772846"]},"month":"07","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"external_id":{"arxiv":["2302.06420"]},"quality_controlled":"1","doi":"10.4230/LIPIcs.ITP.2023.15","conference":{"name":"ITP: International Conference on Interactive Theorem Proving","location":"Bialystok, Poland","start_date":"2023-07-31","end_date":"2023-08-04"},"language":[{"iso":"eng"}],"article_number":"15","file_date_updated":"2023-08-07T11:55:43Z","year":"2023","acknowledgement":"Jasmin Blanchette: This research has received funding from the Netherlands Organization\r\nfor Scientific Research (NWO) under the Vidi program (project No. 016.Vidi.189.037, Lean Forward).\r\n__\r\nWe thank Vladimir Kolmogorov for making this collaboration possible. We\r\nthank Václav Končický for discussing ideas about the Kleene star construction. We thank Patrick Johnson, Floris van Doorn, and Damiano Testa for their small yet very valuable contributions to our code. We thank Eric Wieser for simplifying one of our proofs. We thank Mark Summerfield for suggesting textual improvements. We thank the anonymous reviewers for very helpful comments. Finally, we thank the Lean community for helping us with various technical issues and answering many questions. ","department":[{"_id":"GradSch"},{"_id":"VlKo"}],"publisher":"Schloss Dagstuhl - Leibniz-Zentrum für Informatik","publication_status":"published","related_material":{"link":[{"url":"https://github.com/madvorak/grammars/tree/publish","relation":"software"}]},"author":[{"full_name":"Dvorak, Martin","id":"40ED02A8-C8B4-11E9-A9C0-453BE6697425","orcid":"0000-0001-5293-214X","first_name":"Martin","last_name":"Dvorak"},{"first_name":"Jasmin","last_name":"Blanchette","full_name":"Blanchette, Jasmin"}],"volume":268,"date_created":"2023-06-05T07:29:05Z","date_updated":"2023-09-25T11:04:29Z"},{"article_type":"original","page":"433-457","publication":"Journal of Graph Algorithms and Applications","citation":{"ieee":"A. M. Arroyo Guevara and S. Felsner, “Approximating the bundled crossing number,” Journal of Graph Algorithms and Applications, vol. 27, no. 6. Brown University, pp. 433–457, 2023.","apa":"Arroyo Guevara, A. M., & Felsner, S. (2023). Approximating the bundled crossing number. Journal of Graph Algorithms and Applications. Brown University. https://doi.org/10.7155/jgaa.00629","ista":"Arroyo Guevara AM, Felsner S. 2023. Approximating the bundled crossing number. Journal of Graph Algorithms and Applications. 27(6), 433–457.","ama":"Arroyo Guevara AM, Felsner S. Approximating the bundled crossing number. Journal of Graph Algorithms and Applications. 2023;27(6):433-457. doi:10.7155/jgaa.00629","chicago":"Arroyo Guevara, Alan M, and Stefan Felsner. “Approximating the Bundled Crossing Number.” Journal of Graph Algorithms and Applications. Brown University, 2023. https://doi.org/10.7155/jgaa.00629.","short":"A.M. Arroyo Guevara, S. Felsner, Journal of Graph Algorithms and Applications 27 (2023) 433–457.","mla":"Arroyo Guevara, Alan M., and Stefan Felsner. “Approximating the Bundled Crossing Number.” Journal of Graph Algorithms and Applications, vol. 27, no. 6, Brown University, 2023, pp. 433–57, doi:10.7155/jgaa.00629."},"date_published":"2023-07-01T00:00:00Z","scopus_import":"1","day":"01","has_accepted_license":"1","article_processing_charge":"Yes","title":"Approximating the bundled crossing number","ddc":["510"],"status":"public","intvolume":" 27","_id":"13969","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file":[{"date_created":"2023-08-07T08:00:48Z","date_updated":"2023-08-07T08:00:48Z","success":1,"checksum":"9c30d2b8e324cc1c904f2aeec92013a3","file_id":"13979","relation":"main_file","creator":"dernst","content_type":"application/pdf","file_size":865774,"file_name":"2023_JourGraphAlgorithms_Arroyo.pdf","access_level":"open_access"}],"oa_version":"Published Version","type":"journal_article","abstract":[{"lang":"eng","text":"Bundling crossings is a strategy which can enhance the readability\r\nof graph drawings. In this paper we consider good drawings, i.e., we require that\r\nany two edges have at most one common point which can be a common vertex or a\r\ncrossing. Our main result is that there is a polynomial-time algorithm to compute an\r\n8-approximation of the bundled crossing number of a good drawing with no toothed\r\nhole. In general the number of toothed holes has to be added to the 8-approximation.\r\nIn the special case of circular drawings the approximation factor is 8, this improves\r\nupon the 10-approximation of Fink et al. [14]. Our approach also works with the same\r\napproximation factor for families of pseudosegments, i.e., curves intersecting at most\r\nonce. We also show how to compute a 9/2-approximation when the intersection graph of\r\nthe pseudosegments is bipartite and has no toothed hole."}],"issue":"6","quality_controlled":"1","project":[{"call_identifier":"H2020","name":"ISTplus - Postdoctoral Fellowships","_id":"260C2330-B435-11E9-9278-68D0E5697425","grant_number":"754411"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"arxiv":["2109.14892"]},"oa":1,"language":[{"iso":"eng"}],"doi":"10.7155/jgaa.00629","month":"07","publication_identifier":{"issn":["1526-1719"]},"publication_status":"published","department":[{"_id":"UlWa"}],"publisher":"Brown University","acknowledgement":"This work was initiated during the Workshop on Geometric Graphs in November 2019 in Strobl, Austria. We would like to thank Oswin Aichholzer, Fabian Klute, Man-Kwun Chiu, Martin Balko, Pavel Valtr for their avid discussions during the workshop. The first author has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Sk lodowska-Curie grant agreement No 754411. The second author has been supported by the German Research Foundation DFG Project FE 340/12-1. An extended abstract of this paper has been published in the proceedings of WALCOM 2022 in the Springer LNCS series, vol. 13174, pages 383–395.","year":"2023","date_created":"2023-08-06T22:01:11Z","date_updated":"2023-09-25T10:56:10Z","volume":27,"author":[{"first_name":"Alan M","last_name":"Arroyo Guevara","id":"3207FDC6-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-2401-8670","full_name":"Arroyo Guevara, Alan M"},{"first_name":"Stefan","last_name":"Felsner","full_name":"Felsner, Stefan"}],"related_material":{"record":[{"relation":"earlier_version","status":"public","id":"11185"}]},"file_date_updated":"2023-08-07T08:00:48Z","ec_funded":1},{"abstract":[{"text":"We study the Hamilton cycle problem with input a random graph G ~ G(n,p) in two different settings. In the first one, G is given to us in the form of randomly ordered adjacency lists while in the second one, we are given the adjacency matrix of G. In each of the two settings we derive a deterministic algorithm that w.h.p. either finds a Hamilton cycle or returns a certificate that such a cycle does not exist for p = p(n) ≥ 0. The running times of our algorithms are O(n) and respectively, each being best possible in its own setting.","lang":"eng"}],"type":"conference","oa_version":"Preprint","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"14344","title":"Fast algorithms for solving the Hamilton cycle problem with high probability","status":"public","intvolume":" 2023","day":"01","article_processing_charge":"No","scopus_import":"1","date_published":"2023-01-01T00:00:00Z","publication":"Proceedings of the Annual ACM-SIAM Symposium on Discrete Algorithms","citation":{"ama":"Anastos M. Fast algorithms for solving the Hamilton cycle problem with high probability. In: Proceedings of the Annual ACM-SIAM Symposium on Discrete Algorithms. Vol 2023. Society for Industrial and Applied Mathematics; 2023:2286-2323. doi:10.1137/1.9781611977554.ch88","ista":"Anastos M. 2023. Fast algorithms for solving the Hamilton cycle problem with high probability. Proceedings of the Annual ACM-SIAM Symposium on Discrete Algorithms. SODA: Symposium on Discrete Algorithms vol. 2023, 2286–2323.","apa":"Anastos, M. (2023). Fast algorithms for solving the Hamilton cycle problem with high probability. In Proceedings of the Annual ACM-SIAM Symposium on Discrete Algorithms (Vol. 2023, pp. 2286–2323). Florence, Italy: Society for Industrial and Applied Mathematics. https://doi.org/10.1137/1.9781611977554.ch88","ieee":"M. Anastos, “Fast algorithms for solving the Hamilton cycle problem with high probability,” in Proceedings of the Annual ACM-SIAM Symposium on Discrete Algorithms, Florence, Italy, 2023, vol. 2023, pp. 2286–2323.","mla":"Anastos, Michael. “Fast Algorithms for Solving the Hamilton Cycle Problem with High Probability.” Proceedings of the Annual ACM-SIAM Symposium on Discrete Algorithms, vol. 2023, Society for Industrial and Applied Mathematics, 2023, pp. 2286–323, doi:10.1137/1.9781611977554.ch88.","short":"M. Anastos, in:, Proceedings of the Annual ACM-SIAM Symposium on Discrete Algorithms, Society for Industrial and Applied Mathematics, 2023, pp. 2286–2323.","chicago":"Anastos, Michael. “Fast Algorithms for Solving the Hamilton Cycle Problem with High Probability.” In Proceedings of the Annual ACM-SIAM Symposium on Discrete Algorithms, 2023:2286–2323. Society for Industrial and Applied Mathematics, 2023. https://doi.org/10.1137/1.9781611977554.ch88."},"page":"2286-2323","author":[{"full_name":"Anastos, Michael","id":"0b2a4358-bb35-11ec-b7b9-e3279b593dbb","first_name":"Michael","last_name":"Anastos"}],"date_created":"2023-09-17T22:01:10Z","date_updated":"2023-09-25T09:13:41Z","volume":2023,"year":"2023","publication_status":"published","department":[{"_id":"MaKw"}],"publisher":"Society for Industrial and Applied Mathematics","month":"01","publication_identifier":{"isbn":["9781611977554"]},"conference":{"start_date":"2023-01-22","location":"Florence, Italy","end_date":"2023-01-25","name":"SODA: Symposium on Discrete Algorithms"},"doi":"10.1137/1.9781611977554.ch88","language":[{"iso":"eng"}],"oa":1,"external_id":{"arxiv":["2111.14759"]},"main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2111.14759"}],"quality_controlled":"1"},{"publication_identifier":{"eissn":["1521-4095"],"issn":["0935-9648"]},"month":"03","quality_controlled":"1","isi":1,"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"isi":["000941068900001"],"pmid":["36461812"]},"oa":1,"language":[{"iso":"eng"}],"doi":"10.1002/adma.202206110","article_number":"2206110","file_date_updated":"2023-09-26T10:51:56Z","publisher":"Wiley","department":[{"_id":"EdHa"}],"publication_status":"published","pmid":1,"acknowledgement":"B.S. and A.R. contributed equally to this work. A.P.G.C. and P.R.F. acknowledge the funding from Fundação para a Ciência e Tecnologia (Portugal), through IDMEC, under LAETA project UIDB/50022/2020. T.H.V.P. acknowledges the funding from Fundação para a Ciência e Tecnologia (Portugal), through Ph.D. Grant 2020.04417.BD. A.S. acknowledges that this work was partially supported by the ATTRACT Investigator Grant (no. A17/MS/11572821/MBRACE, to A.S.) from the Luxembourg National Research Fund. The author thanks Gerardo Ceada for his help in the graphical representations. N.A.K. acknowledges support from the European Research Council (grant 851960) and the Gravitation Program “Materials Driven Regeneration,” funded by the Netherlands Organization for Scientific Research (024.003.013). M.B.A. acknowledges support from the French National Research Agency (grant ANR-201-8-CE1-3-0008 for the project “Epimorph”). G.E.S.T. acknowledges funding by the Australian Research Council through project DP200102593. A.C. acknowledges the funding from the Deutsche Forschungsgemeinschaft (DFG) Emmy Noether Grant CI 203/-2 1, the Spanish Ministry of Science and Innovation (PID2021-123013O-BI00) and the IKERBASQUE Basque Foundation for Science.","year":"2023","volume":35,"date_updated":"2023-09-26T10:56:46Z","date_created":"2023-03-05T23:01:06Z","author":[{"full_name":"Schamberger, Barbara","last_name":"Schamberger","first_name":"Barbara"},{"full_name":"Ziege, Ricardo","last_name":"Ziege","first_name":"Ricardo"},{"last_name":"Anselme","first_name":"Karine","full_name":"Anselme, Karine"},{"full_name":"Ben Amar, Martine","last_name":"Ben Amar","first_name":"Martine"},{"full_name":"Bykowski, Michał","first_name":"Michał","last_name":"Bykowski"},{"full_name":"Castro, André P.G.","last_name":"Castro","first_name":"André P.G."},{"full_name":"Cipitria, Amaia","first_name":"Amaia","last_name":"Cipitria"},{"full_name":"Coles, Rhoslyn A.","first_name":"Rhoslyn A.","last_name":"Coles"},{"first_name":"Rumiana","last_name":"Dimova","full_name":"Dimova, Rumiana"},{"full_name":"Eder, Michaela","first_name":"Michaela","last_name":"Eder"},{"first_name":"Sebastian","last_name":"Ehrig","full_name":"Ehrig, Sebastian"},{"full_name":"Escudero, Luis M.","first_name":"Luis M.","last_name":"Escudero"},{"full_name":"Evans, Myfanwy E.","last_name":"Evans","first_name":"Myfanwy E."},{"full_name":"Fernandes, Paulo R.","first_name":"Paulo R.","last_name":"Fernandes"},{"first_name":"Peter","last_name":"Fratzl","full_name":"Fratzl, Peter"},{"full_name":"Geris, Liesbet","last_name":"Geris","first_name":"Liesbet"},{"last_name":"Gierlinger","first_name":"Notburga","full_name":"Gierlinger, Notburga"},{"full_name":"Hannezo, Edouard B","first_name":"Edouard B","last_name":"Hannezo","id":"3A9DB764-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6005-1561"},{"last_name":"Iglič","first_name":"Aleš","full_name":"Iglič, Aleš"},{"full_name":"Kirkensgaard, Jacob J.K.","first_name":"Jacob J.K.","last_name":"Kirkensgaard"},{"first_name":"Philip","last_name":"Kollmannsberger","full_name":"Kollmannsberger, Philip"},{"first_name":"Łucja","last_name":"Kowalewska","full_name":"Kowalewska, Łucja"},{"full_name":"Kurniawan, Nicholas A.","first_name":"Nicholas A.","last_name":"Kurniawan"},{"full_name":"Papantoniou, Ioannis","first_name":"Ioannis","last_name":"Papantoniou"},{"last_name":"Pieuchot","first_name":"Laurent","full_name":"Pieuchot, Laurent"},{"full_name":"Pires, Tiago H.V.","first_name":"Tiago H.V.","last_name":"Pires"},{"first_name":"Lars D.","last_name":"Renner","full_name":"Renner, Lars D."},{"first_name":"Andrew O.","last_name":"Sageman-Furnas","full_name":"Sageman-Furnas, Andrew O."},{"full_name":"Schröder-Turk, Gerd E.","first_name":"Gerd E.","last_name":"Schröder-Turk"},{"first_name":"Anupam","last_name":"Sengupta","full_name":"Sengupta, Anupam"},{"full_name":"Sharma, Vikas R.","first_name":"Vikas R.","last_name":"Sharma"},{"first_name":"Antonio","last_name":"Tagua","full_name":"Tagua, Antonio"},{"first_name":"Caterina","last_name":"Tomba","full_name":"Tomba, Caterina"},{"full_name":"Trepat, Xavier","first_name":"Xavier","last_name":"Trepat"},{"first_name":"Sarah L.","last_name":"Waters","full_name":"Waters, Sarah L."},{"full_name":"Yeo, Edwina F.","first_name":"Edwina F.","last_name":"Yeo"},{"full_name":"Roschger, Andreas","first_name":"Andreas","last_name":"Roschger"},{"first_name":"Cécile M.","last_name":"Bidan","full_name":"Bidan, Cécile M."},{"full_name":"Dunlop, John W.C.","last_name":"Dunlop","first_name":"John W.C."}],"scopus_import":"1","article_processing_charge":"No","has_accepted_license":"1","day":"29","article_type":"review","citation":{"chicago":"Schamberger, Barbara, Ricardo Ziege, Karine Anselme, Martine Ben Amar, Michał Bykowski, André P.G. Castro, Amaia Cipitria, et al. “Curvature in Biological Systems: Its Quantification, Emergence, and Implications across the Scales.” Advanced Materials. Wiley, 2023. https://doi.org/10.1002/adma.202206110.","mla":"Schamberger, Barbara, et al. “Curvature in Biological Systems: Its Quantification, Emergence, and Implications across the Scales.” Advanced Materials, vol. 35, no. 13, 2206110, Wiley, 2023, doi:10.1002/adma.202206110.","short":"B. Schamberger, R. Ziege, K. Anselme, M. Ben Amar, M. Bykowski, A.P.G. Castro, A. Cipitria, R.A. Coles, R. Dimova, M. Eder, S. Ehrig, L.M. Escudero, M.E. Evans, P.R. Fernandes, P. Fratzl, L. Geris, N. Gierlinger, E.B. Hannezo, A. Iglič, J.J.K. Kirkensgaard, P. Kollmannsberger, Ł. Kowalewska, N.A. Kurniawan, I. Papantoniou, L. Pieuchot, T.H.V. Pires, L.D. Renner, A.O. Sageman-Furnas, G.E. Schröder-Turk, A. Sengupta, V.R. Sharma, A. Tagua, C. Tomba, X. Trepat, S.L. Waters, E.F. Yeo, A. Roschger, C.M. Bidan, J.W.C. Dunlop, Advanced Materials 35 (2023).","ista":"Schamberger B, Ziege R, Anselme K, Ben Amar M, Bykowski M, Castro APG, Cipitria A, Coles RA, Dimova R, Eder M, Ehrig S, Escudero LM, Evans ME, Fernandes PR, Fratzl P, Geris L, Gierlinger N, Hannezo EB, Iglič A, Kirkensgaard JJK, Kollmannsberger P, Kowalewska Ł, Kurniawan NA, Papantoniou I, Pieuchot L, Pires THV, Renner LD, Sageman-Furnas AO, Schröder-Turk GE, Sengupta A, Sharma VR, Tagua A, Tomba C, Trepat X, Waters SL, Yeo EF, Roschger A, Bidan CM, Dunlop JWC. 2023. Curvature in biological systems: Its quantification, emergence, and implications across the scales. Advanced Materials. 35(13), 2206110.","apa":"Schamberger, B., Ziege, R., Anselme, K., Ben Amar, M., Bykowski, M., Castro, A. P. G., … Dunlop, J. W. C. (2023). Curvature in biological systems: Its quantification, emergence, and implications across the scales. Advanced Materials. Wiley. https://doi.org/10.1002/adma.202206110","ieee":"B. Schamberger et al., “Curvature in biological systems: Its quantification, emergence, and implications across the scales,” Advanced Materials, vol. 35, no. 13. Wiley, 2023.","ama":"Schamberger B, Ziege R, Anselme K, et al. Curvature in biological systems: Its quantification, emergence, and implications across the scales. Advanced Materials. 2023;35(13). doi:10.1002/adma.202206110"},"publication":"Advanced Materials","date_published":"2023-03-29T00:00:00Z","type":"journal_article","issue":"13","abstract":[{"lang":"eng","text":"Surface curvature both emerges from, and influences the behavior of, living objects at length scales ranging from cell membranes to single cells to tissues and organs. The relevance of surface curvature in biology is supported by numerous experimental and theoretical investigations in recent years. In this review, first, a brief introduction to the key ideas of surface curvature in the context of biological systems is given and the challenges that arise when measuring surface curvature are discussed. Giving an overview of the emergence of curvature in biological systems, its significance at different length scales becomes apparent. On the other hand, summarizing current findings also shows that both single cells and entire cell sheets, tissues or organisms respond to curvature by modulating their shape and their migration behavior. Finally, the interplay between the distribution of morphogens or micro-organisms and the emergence of curvature across length scales is addressed with examples demonstrating these key mechanistic principles of morphogenesis. Overall, this review highlights that curved interfaces are not merely a passive by-product of the chemical, biological, and mechanical processes but that curvature acts also as a signal that co-determines these processes."}],"intvolume":" 35","status":"public","title":"Curvature in biological systems: Its quantification, emergence, and implications across the scales","ddc":["570"],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"12710","oa_version":"Published Version","file":[{"success":1,"checksum":"5c04d68130e97a0ecd1ca27fbc15a246","date_updated":"2023-09-26T10:51:56Z","date_created":"2023-09-26T10:51:56Z","file_id":"14373","relation":"main_file","creator":"dernst","file_size":2898063,"content_type":"application/pdf","access_level":"open_access","file_name":"2023_AdvancedMaterials_Schamberger.pdf"}]},{"date_published":"2023-06-14T00:00:00Z","article_type":"original","citation":{"mla":"Andersen, Benjamin H., et al. “Symmetry-Restoring Crossover from Defect-Free to Defect-Laden Turbulence in Polar Active Matter.” Physical Review Fluids, vol. 8, no. 6, 063101, American Physical Society, 2023, doi:10.1103/physrevfluids.8.063101.","short":"B.H. Andersen, J.B. Renaud, J. Rønning, L. Angheluta, A. Doostmohammadi, Physical Review Fluids 8 (2023).","chicago":"Andersen, Benjamin H., Julian B Renaud, Jonas Rønning, Luiza Angheluta, and Amin Doostmohammadi. “Symmetry-Restoring Crossover from Defect-Free to Defect-Laden Turbulence in Polar Active Matter.” Physical Review Fluids. American Physical Society, 2023. https://doi.org/10.1103/physrevfluids.8.063101.","ama":"Andersen BH, Renaud JB, Rønning J, Angheluta L, Doostmohammadi A. Symmetry-restoring crossover from defect-free to defect-laden turbulence in polar active matter. Physical Review Fluids. 2023;8(6). doi:10.1103/physrevfluids.8.063101","ista":"Andersen BH, Renaud JB, Rønning J, Angheluta L, Doostmohammadi A. 2023. Symmetry-restoring crossover from defect-free to defect-laden turbulence in polar active matter. Physical Review Fluids. 8(6), 063101.","ieee":"B. H. Andersen, J. B. Renaud, J. Rønning, L. Angheluta, and A. Doostmohammadi, “Symmetry-restoring crossover from defect-free to defect-laden turbulence in polar active matter,” Physical Review Fluids, vol. 8, no. 6. American Physical Society, 2023.","apa":"Andersen, B. H., Renaud, J. B., Rønning, J., Angheluta, L., & Doostmohammadi, A. (2023). Symmetry-restoring crossover from defect-free to defect-laden turbulence in polar active matter. Physical Review Fluids. American Physical Society. https://doi.org/10.1103/physrevfluids.8.063101"},"publication":"Physical Review Fluids","article_processing_charge":"No","day":"14","keyword":["Fluid Flow and Transfer Processes","Modeling and Simulation","Computational Mechanics"],"scopus_import":"1","oa_version":"Preprint","intvolume":" 8","title":"Symmetry-restoring crossover from defect-free to defect-laden turbulence in polar active matter","status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"14377","issue":"6","abstract":[{"text":"Coherent flows of self-propelled particles are characterized by vortices and jets that sustain chaotic flows, referred to as active turbulence. Here, we reveal a crossover between defect-free active turbulence and active turbulence laden with topological defects. Interestingly, we show that concurrent to the crossover from defect-free to defect-laden active turbulence is the restoration of the previously broken SO(2) symmetry signaled by the fast decay of the two-point correlations. By stability analyses of the topological charge density field, we provide theoretical insights on the criterion for the crossover to the defect-laden active turbulent state. Despite the distinct symmetry features between these two active turbulence regimes, the flow fluctuations exhibit universal statistical scaling behaviors at large scales, while the spectrum of polarity fluctuations decays exponentially at small length scales compared to the active energy injection length. These findings reveal a dynamical crossover between distinct spatiotemporal organization patterns in polar active matter.","lang":"eng"}],"type":"journal_article","language":[{"iso":"eng"}],"doi":"10.1103/physrevfluids.8.063101","quality_controlled":"1","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/2209.10916"}],"external_id":{"arxiv":["2209.10916"]},"oa":1,"publication_identifier":{"issn":["2469-990X"]},"month":"06","volume":8,"date_updated":"2023-10-03T07:25:39Z","date_created":"2023-09-29T08:46:47Z","author":[{"full_name":"Andersen, Benjamin H.","last_name":"Andersen","first_name":"Benjamin H."},{"id":"7af6767d-14eb-11ed-b536-a32449ae867c","first_name":"Julian B","last_name":"Renaud","full_name":"Renaud, Julian B"},{"full_name":"Rønning, Jonas","last_name":"Rønning","first_name":"Jonas"},{"last_name":"Angheluta","first_name":"Luiza","full_name":"Angheluta, Luiza"},{"full_name":"Doostmohammadi, Amin","last_name":"Doostmohammadi","first_name":"Amin"}],"publisher":"American Physical Society","publication_status":"published","year":"2023","extern":"1","article_number":"063101"},{"publication_status":"published","department":[{"_id":"RaKl"}],"publisher":"American Association for the Advancement of Science","acknowledgement":"We acknowledge funding from the European Union’s Horizon 2020 Research and Innovation Program [European Research Council grants 820008 (Ra.K.) and 101045223 (A.P.) and Marie Skłodowska-Curie grants 812868 (J.G.) and 101022777 (T.-P.R.)], the Academy of Finland [Center of Excellence Programme LIBER grant 346107 (A.P.), Flagship Programme PREIN grant 320165 (A.P.), and Postdoctoral Researcher grant 340103 (T.-P.R.)], Zuckerman STEM Leadership Program Fellowship (J.R.C.), President’s PhD Scholarship (M.O.), and the EPSRC [Established Career Fellowship grant EP/R00188X/1 (M.J.F.)].","year":"2023","date_created":"2023-08-01T08:26:15Z","date_updated":"2023-10-03T08:11:26Z","volume":381,"author":[{"full_name":"Gemen, Julius","first_name":"Julius","last_name":"Gemen"},{"last_name":"Church","first_name":"Jonathan R.","full_name":"Church, Jonathan R."},{"full_name":"Ruoko, Tero-Petri","first_name":"Tero-Petri","last_name":"Ruoko"},{"last_name":"Durandin","first_name":"Nikita","full_name":"Durandin, Nikita"},{"first_name":"Michał J.","last_name":"Białek","full_name":"Białek, Michał J."},{"first_name":"Maren","last_name":"Weissenfels","full_name":"Weissenfels, Maren"},{"full_name":"Feller, Moran","last_name":"Feller","first_name":"Moran"},{"full_name":"Kazes, Miri","last_name":"Kazes","first_name":"Miri"},{"last_name":"Borin","first_name":"Veniamin A.","full_name":"Borin, Veniamin A."},{"last_name":"Odaybat","first_name":"Magdalena","full_name":"Odaybat, Magdalena"},{"full_name":"Kalepu, Rishir","first_name":"Rishir","last_name":"Kalepu"},{"full_name":"Diskin-Posner, Yael","first_name":"Yael","last_name":"Diskin-Posner"},{"last_name":"Oron","first_name":"Dan","full_name":"Oron, Dan"},{"full_name":"Fuchter, Matthew J.","first_name":"Matthew J.","last_name":"Fuchter"},{"first_name":"Arri","last_name":"Priimagi","full_name":"Priimagi, Arri"},{"full_name":"Schapiro, Igor","first_name":"Igor","last_name":"Schapiro"},{"full_name":"Klajn, Rafal","first_name":"Rafal","last_name":"Klajn","id":"8e84690e-1e48-11ed-a02b-a1e6fb8bb53b"}],"month":"09","publication_identifier":{"eissn":["1095-9203"]},"quality_controlled":"1","main_file_link":[{"open_access":"1","url":"https://doi.org/10.26434/chemrxiv-2023-gq2h0"}],"oa":1,"language":[{"iso":"eng"}],"doi":"10.1126/science.adh9059","type":"journal_article","abstract":[{"lang":"eng","text":"Photoisomerization of azobenzenes from their stable E isomer to the metastable Z state is the basis of numerous applications of these molecules. However, this reaction typically requires ultraviolet light, which limits applicability. In this study, we introduce disequilibration by sensitization under confinement (DESC), a supramolecular approach to induce the E-to-Z isomerization by using light of a desired color, including red. DESC relies on a combination of a macrocyclic host and a photosensitizer, which act together to selectively bind and sensitize E-azobenzenes for isomerization. The Z isomer lacks strong affinity for and is expelled from the host, which can then convert additional E-azobenzenes to the Z state. In this way, the host–photosensitizer complex converts photon energy into chemical energy in the form of out-of-equilibrium photostationary states, including ones that cannot be accessed through direct photoexcitation."}],"issue":"6664","status":"public","title":"Disequilibrating azoarenes by visible-light sensitization under confinement","intvolume":" 381","_id":"13340","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Preprint","scopus_import":"1","day":"22","article_processing_charge":"No","article_type":"original","page":"1357-1363","publication":"Science","citation":{"chicago":"Gemen, Julius, Jonathan R. Church, Tero-Petri Ruoko, Nikita Durandin, Michał J. Białek, Maren Weissenfels, Moran Feller, et al. “Disequilibrating Azoarenes by Visible-Light Sensitization under Confinement.” Science. American Association for the Advancement of Science, 2023. https://doi.org/10.1126/science.adh9059.","short":"J. Gemen, J.R. Church, T.-P. Ruoko, N. Durandin, M.J. Białek, M. Weissenfels, M. Feller, M. Kazes, V.A. Borin, M. Odaybat, R. Kalepu, Y. Diskin-Posner, D. Oron, M.J. Fuchter, A. Priimagi, I. Schapiro, R. Klajn, Science 381 (2023) 1357–1363.","mla":"Gemen, Julius, et al. “Disequilibrating Azoarenes by Visible-Light Sensitization under Confinement.” Science, vol. 381, no. 6664, American Association for the Advancement of Science, 2023, pp. 1357–63, doi:10.1126/science.adh9059.","ieee":"J. Gemen et al., “Disequilibrating azoarenes by visible-light sensitization under confinement,” Science, vol. 381, no. 6664. American Association for the Advancement of Science, pp. 1357–1363, 2023.","apa":"Gemen, J., Church, J. R., Ruoko, T.-P., Durandin, N., Białek, M. J., Weissenfels, M., … Klajn, R. (2023). Disequilibrating azoarenes by visible-light sensitization under confinement. Science. American Association for the Advancement of Science. https://doi.org/10.1126/science.adh9059","ista":"Gemen J, Church JR, Ruoko T-P, Durandin N, Białek MJ, Weissenfels M, Feller M, Kazes M, Borin VA, Odaybat M, Kalepu R, Diskin-Posner Y, Oron D, Fuchter MJ, Priimagi A, Schapiro I, Klajn R. 2023. Disequilibrating azoarenes by visible-light sensitization under confinement. Science. 381(6664), 1357–1363.","ama":"Gemen J, Church JR, Ruoko T-P, et al. Disequilibrating azoarenes by visible-light sensitization under confinement. Science. 2023;381(6664):1357-1363. doi:10.1126/science.adh9059"},"date_published":"2023-09-22T00:00:00Z"},{"article_processing_charge":"No","day":"21","scopus_import":"1","date_published":"2023-02-21T00:00:00Z","citation":{"mla":"Sorichetti, Valerio, et al. “Structure and Elasticity of Model Disordered, Polydisperse, and Defect-Free Polymer Networks.” Journal of Chemical Physics, vol. 158, no. 7, 074905, American Institute of Physics, 2023, doi:10.1063/5.0134271.","short":"V. Sorichetti, A. Ninarello, J. Ruiz-Franco, V. Hugouvieux, E. Zaccarelli, C. Micheletti, W. Kob, L. Rovigatti, Journal of Chemical Physics 158 (2023).","chicago":"Sorichetti, Valerio, Andrea Ninarello, José Ruiz-Franco, Virginie Hugouvieux, Emanuela Zaccarelli, Cristian Micheletti, Walter Kob, and Lorenzo Rovigatti. “Structure and Elasticity of Model Disordered, Polydisperse, and Defect-Free Polymer Networks.” Journal of Chemical Physics. American Institute of Physics, 2023. https://doi.org/10.1063/5.0134271.","ama":"Sorichetti V, Ninarello A, Ruiz-Franco J, et al. Structure and elasticity of model disordered, polydisperse, and defect-free polymer networks. Journal of Chemical Physics. 2023;158(7). doi:10.1063/5.0134271","ista":"Sorichetti V, Ninarello A, Ruiz-Franco J, Hugouvieux V, Zaccarelli E, Micheletti C, Kob W, Rovigatti L. 2023. Structure and elasticity of model disordered, polydisperse, and defect-free polymer networks. Journal of Chemical Physics. 158(7), 074905.","ieee":"V. Sorichetti et al., “Structure and elasticity of model disordered, polydisperse, and defect-free polymer networks,” Journal of Chemical Physics, vol. 158, no. 7. American Institute of Physics, 2023.","apa":"Sorichetti, V., Ninarello, A., Ruiz-Franco, J., Hugouvieux, V., Zaccarelli, E., Micheletti, C., … Rovigatti, L. (2023). Structure and elasticity of model disordered, polydisperse, and defect-free polymer networks. Journal of Chemical Physics. American Institute of Physics. https://doi.org/10.1063/5.0134271"},"publication":"Journal of Chemical Physics","article_type":"original","issue":"7","abstract":[{"lang":"eng","text":"The elasticity of disordered and polydisperse polymer networks is a fundamental problem of soft matter physics that is still open. Here, we self-assemble polymer networks via simulations of a mixture of bivalent and tri- or tetravalent patchy particles, which result in an exponential strand length distribution analogous to that of experimental randomly cross-linked systems. After assembly, the network connectivity and topology are frozen and the resulting system is characterized. We find that the fractal structure of the network depends on the number density at which the assembly has been carried out, but that systems with the same mean valence and same assembly density have the same structural properties. Moreover, we compute the long-time limit of the mean-squared displacement, also known as the (squared) localization length, of the cross-links and of the middle monomers of the strands, showing that the dynamics of long strands is well described by the tube model. Finally, we find a relation connecting these two localization lengths at high density and connect the cross-link localization length to the shear modulus of the system."}],"type":"journal_article","oa_version":"Preprint","_id":"12705","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","intvolume":" 158","title":"Structure and elasticity of model disordered, polydisperse, and defect-free polymer networks","status":"public","publication_identifier":{"eissn":["1089-7690"],"issn":["0021-9606"]},"month":"02","doi":"10.1063/5.0134271","language":[{"iso":"eng"}],"main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2211.04810","open_access":"1"}],"oa":1,"external_id":{"isi":["000936943800002"],"pmid":["36813705"],"arxiv":["2211.04810"]},"quality_controlled":"1","isi":1,"article_number":"074905","author":[{"first_name":"Valerio","last_name":"Sorichetti","id":"ef8a92cb-c7b6-11ec-8bea-e1fd5847bc5b","orcid":"0000-0002-9645-6576","full_name":"Sorichetti, Valerio"},{"full_name":"Ninarello, Andrea","first_name":"Andrea","last_name":"Ninarello"},{"full_name":"Ruiz-Franco, José","last_name":"Ruiz-Franco","first_name":"José"},{"last_name":"Hugouvieux","first_name":"Virginie","full_name":"Hugouvieux, Virginie"},{"first_name":"Emanuela","last_name":"Zaccarelli","full_name":"Zaccarelli, Emanuela"},{"first_name":"Cristian","last_name":"Micheletti","full_name":"Micheletti, Cristian"},{"full_name":"Kob, Walter","last_name":"Kob","first_name":"Walter"},{"full_name":"Rovigatti, Lorenzo","last_name":"Rovigatti","first_name":"Lorenzo"}],"volume":158,"date_created":"2023-03-05T23:01:05Z","date_updated":"2023-10-03T11:31:51Z","pmid":1,"acknowledgement":"We thank Michael Lang for helpful discussions. We acknowledge financial support from the European Research Council (ERC Consolidator Grant No. 681597, MIMIC) and from LabEx NUMEV (Grant No. ANR-10-LABX-20) funded by the “Investissements d’Avenir” French Government program, managed by the French National Research Agency (ANR). W.K. is a senior member of the Institut Universitaire de France.","year":"2023","department":[{"_id":"AnSa"}],"publisher":"American Institute of Physics","publication_status":"published"},{"type":"journal_article","abstract":[{"lang":"eng","text":"We study turn-based stochastic zero-sum games with lexicographic preferences over objectives. Stochastic games are standard models in control, verification, and synthesis of stochastic reactive systems that exhibit both randomness as well as controllable and adversarial non-determinism. Lexicographic order allows one to consider multiple objectives with a strict preference order. To the best of our knowledge, stochastic games with lexicographic objectives have not been studied before. For a mixture of reachability and safety objectives, we show that deterministic lexicographically optimal strategies exist and memory is only required to remember the already satisfied and violated objectives. For a constant number of objectives, we show that the relevant decision problem is in NP∩coNP, matching the current known bound for single objectives; and in general the decision problem is PSPACE-hard and can be solved in NEXPTIME∩coNEXPTIME. We present an algorithm that computes the lexicographically optimal strategies via a reduction to the computation of optimal strategies in a sequence of single-objectives games. For omega-regular objectives, we restrict our analysis to one-player games, also known as Markov decision processes. We show that lexicographically optimal strategies exist and need either randomization or finite memory. We present an algorithm that solves the relevant decision problem in polynomial time. We have implemented our algorithms and report experimental results on various case studies."}],"status":"public","ddc":["000"],"title":"Stochastic games with lexicographic objectives","_id":"12738","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Published Version","scopus_import":"1","day":"08","article_processing_charge":"No","article_type":"original","publication":"Formal Methods in System Design","citation":{"ama":"Chatterjee K, Katoen JP, Mohr S, Weininger M, Winkler T. Stochastic games with lexicographic objectives. Formal Methods in System Design. 2023. doi:10.1007/s10703-023-00411-4","ieee":"K. Chatterjee, J. P. Katoen, S. Mohr, M. Weininger, and T. Winkler, “Stochastic games with lexicographic objectives,” Formal Methods in System Design. Springer Nature, 2023.","apa":"Chatterjee, K., Katoen, J. P., Mohr, S., Weininger, M., & Winkler, T. (2023). Stochastic games with lexicographic objectives. Formal Methods in System Design. Springer Nature. https://doi.org/10.1007/s10703-023-00411-4","ista":"Chatterjee K, Katoen JP, Mohr S, Weininger M, Winkler T. 2023. Stochastic games with lexicographic objectives. Formal Methods in System Design.","short":"K. Chatterjee, J.P. Katoen, S. Mohr, M. Weininger, T. Winkler, Formal Methods in System Design (2023).","mla":"Chatterjee, Krishnendu, et al. “Stochastic Games with Lexicographic Objectives.” Formal Methods in System Design, Springer Nature, 2023, doi:10.1007/s10703-023-00411-4.","chicago":"Chatterjee, Krishnendu, Joost P Katoen, Stefanie Mohr, Maximilian Weininger, and Tobias Winkler. “Stochastic Games with Lexicographic Objectives.” Formal Methods in System Design. Springer Nature, 2023. https://doi.org/10.1007/s10703-023-00411-4."},"date_published":"2023-03-08T00:00:00Z","ec_funded":1,"publication_status":"epub_ahead","publisher":"Springer Nature","department":[{"_id":"KrCh"}],"acknowledgement":"Tobias Winkler and Joost-Pieter Katoen are supported by the DFG RTG 2236 UnRAVeL and the innovation programme under the Marie Skłodowska-Curie grant agreement No. 101008233 (Mission). Krishnendu Chatterjee is supported by the ERC CoG 863818 (ForM-SMArt) and the Vienna Science and Technology Fund (WWTF) Project ICT15-003. Maximilian Weininger is supported by the DFG projects 383882557 Statistical Unbounded Verification (SUV) and 427755713 Group-By Objectives in Probabilistic Verification (GOPro). Stefanie Mohr is supported by the DFG RTG 2428 CONVEY. Open Access funding enabled and organized by Projekt DEAL.","year":"2023","date_updated":"2023-10-03T11:36:13Z","date_created":"2023-03-19T23:00:59Z","author":[{"first_name":"Krishnendu","last_name":"Chatterjee","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4561-241X","full_name":"Chatterjee, Krishnendu"},{"first_name":"Joost P","last_name":"Katoen","id":"4524F760-F248-11E8-B48F-1D18A9856A87","full_name":"Katoen, Joost P"},{"first_name":"Stefanie","last_name":"Mohr","full_name":"Mohr, Stefanie"},{"last_name":"Weininger","first_name":"Maximilian","full_name":"Weininger, Maximilian"},{"first_name":"Tobias","last_name":"Winkler","full_name":"Winkler, Tobias"}],"related_material":{"record":[{"status":"public","relation":"earlier_version","id":"8272"}]},"month":"03","publication_identifier":{"eissn":["1572-8102"]},"quality_controlled":"1","isi":1,"project":[{"name":"Formal Methods for Stochastic Models: Algorithms and Applications","call_identifier":"H2020","grant_number":"863818","_id":"0599E47C-7A3F-11EA-A408-12923DDC885E"},{"name":"Efficient Algorithms for Computer Aided Verification","grant_number":"ICT15-003","_id":"25892FC0-B435-11E9-9278-68D0E5697425"}],"main_file_link":[{"url":"https://doi.org/10.1007/s10703-023-00411-4","open_access":"1"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"isi":["000946174300001"]},"oa":1,"language":[{"iso":"eng"}],"doi":"10.1007/s10703-023-00411-4"},{"has_accepted_license":"1","article_processing_charge":"No","day":"11","month":"07","doi":"10.5281/ZENODO.8133960","date_published":"2023-07-11T00:00:00Z","main_file_link":[{"open_access":"1","url":"https://doi.org/10.5281/zenodo.8133960"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"citation":{"ista":"Ucar MC. 2023. Source data for the manuscript ‘CCR7 acts as both a sensor and a sink for CCL19 to coordinate collective leukocyte migration’, Zenodo, 10.5281/ZENODO.8133960.","apa":"Ucar, M. C. (2023). Source data for the manuscript “CCR7 acts as both a sensor and a sink for CCL19 to coordinate collective leukocyte migration.” Zenodo. https://doi.org/10.5281/ZENODO.8133960","ieee":"M. C. Ucar, “Source data for the manuscript ‘CCR7 acts as both a sensor and a sink for CCL19 to coordinate collective leukocyte migration.’” Zenodo, 2023.","ama":"Ucar MC. Source data for the manuscript “CCR7 acts as both a sensor and a sink for CCL19 to coordinate collective leukocyte migration.” 2023. doi:10.5281/ZENODO.8133960","chicago":"Ucar, Mehmet C. “Source Data for the Manuscript ‘CCR7 Acts as Both a Sensor and a Sink for CCL19 to Coordinate Collective Leukocyte Migration.’” Zenodo, 2023. https://doi.org/10.5281/ZENODO.8133960.","mla":"Ucar, Mehmet C. Source Data for the Manuscript “CCR7 Acts as Both a Sensor and a Sink for CCL19 to Coordinate Collective Leukocyte Migration.” Zenodo, 2023, doi:10.5281/ZENODO.8133960.","short":"M.C. Ucar, (2023)."},"oa":1,"abstract":[{"text":"The zip file includes source data used in the manuscript \"CCR7 acts as both a sensor and a sink for CCL19 to coordinate collective leukocyte migration\", as well as a representative Jupyter notebook to reproduce the main figures. Please see the preprint on bioRxiv and the DOI link there to access the final published version. Note the title change between the preprint and the published manuscript.\r\nA sample script for particle-based simulations of collective chemotaxis by self-generated gradients is also included (see Self-generated_chemotaxis_sample_script.ipynb) to generate exemplary cell trajectories. A detailed description of the simulation setup is provided in the supplementary information of the manuscipt.","lang":"eng"}],"type":"research_data_reference","oa_version":"Published Version","date_updated":"2023-10-03T11:42:58Z","date_created":"2023-09-06T08:39:25Z","related_material":{"record":[{"id":"14274","status":"public","relation":"used_in_publication"}]},"author":[{"orcid":"0000-0003-0506-4217","id":"50B2A802-6007-11E9-A42B-EB23E6697425","last_name":"Ucar","first_name":"Mehmet C","full_name":"Ucar, Mehmet C"}],"department":[{"_id":"EdHa"}],"publisher":"Zenodo","title":"Source data for the manuscript \"CCR7 acts as both a sensor and a sink for CCL19 to coordinate collective leukocyte migration\"","ddc":["570"],"status":"public","year":"2023","_id":"14279","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"tmp":{"name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","short":"CC BY-NC-ND (4.0)","image":"/images/cc_by_nc_nd.png"},"oa":1,"external_id":{"arxiv":["1912.04100"],"isi":["000724652500001"]},"project":[{"_id":"258DCDE6-B435-11E9-9278-68D0E5697425","grant_number":"338804","name":"Random matrices, universality and disordered quantum systems","call_identifier":"FP7"},{"call_identifier":"H2020","name":"International IST Doctoral Program","grant_number":"665385","_id":"2564DBCA-B435-11E9-9278-68D0E5697425"}],"quality_controlled":"1","isi":1,"doi":"10.1002/cpa.22028","language":[{"iso":"eng"}],"publication_identifier":{"issn":["0010-3640"],"eissn":["1097-0312"]},"month":"05","year":"2023","acknowledgement":"L.E. would like to thank Nathanaël Berestycki and D.S.would like to thank Nina Holden for valuable discussions on the Gaussian freefield.G.C. and L.E. are partially supported by ERC Advanced Grant No. 338804.G.C. received funding from the European Union’s Horizon 2020 research and in-novation programme under the Marie Skłodowska-Curie Grant Agreement No.665385. D.S. is supported by Dr. Max Rössler, the Walter Haefner Foundation, and the ETH Zürich Foundation.","department":[{"_id":"LaEr"}],"publisher":"Wiley","publication_status":"published","author":[{"full_name":"Cipolloni, Giorgio","orcid":"0000-0002-4901-7992","id":"42198EFA-F248-11E8-B48F-1D18A9856A87","last_name":"Cipolloni","first_name":"Giorgio"},{"full_name":"Erdös, László","first_name":"László","last_name":"Erdös","id":"4DBD5372-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5366-9603"},{"id":"408ED176-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2904-1856","first_name":"Dominik J","last_name":"Schröder","full_name":"Schröder, Dominik J"}],"volume":76,"date_created":"2021-12-05T23:01:41Z","date_updated":"2023-10-04T09:22:55Z","ec_funded":1,"file_date_updated":"2023-10-04T09:21:48Z","license":"https://creativecommons.org/licenses/by-nc-nd/4.0/","citation":{"short":"G. Cipolloni, L. Erdös, D.J. Schröder, Communications on Pure and Applied Mathematics 76 (2023) 946–1034.","mla":"Cipolloni, Giorgio, et al. “Central Limit Theorem for Linear Eigenvalue Statistics of Non-Hermitian Random Matrices.” Communications on Pure and Applied Mathematics, vol. 76, no. 5, Wiley, 2023, pp. 946–1034, doi:10.1002/cpa.22028.","chicago":"Cipolloni, Giorgio, László Erdös, and Dominik J Schröder. “Central Limit Theorem for Linear Eigenvalue Statistics of Non-Hermitian Random Matrices.” Communications on Pure and Applied Mathematics. Wiley, 2023. https://doi.org/10.1002/cpa.22028.","ama":"Cipolloni G, Erdös L, Schröder DJ. Central limit theorem for linear eigenvalue statistics of non-Hermitian random matrices. Communications on Pure and Applied Mathematics. 2023;76(5):946-1034. doi:10.1002/cpa.22028","apa":"Cipolloni, G., Erdös, L., & Schröder, D. J. (2023). Central limit theorem for linear eigenvalue statistics of non-Hermitian random matrices. Communications on Pure and Applied Mathematics. Wiley. https://doi.org/10.1002/cpa.22028","ieee":"G. Cipolloni, L. Erdös, and D. J. Schröder, “Central limit theorem for linear eigenvalue statistics of non-Hermitian random matrices,” Communications on Pure and Applied Mathematics, vol. 76, no. 5. Wiley, pp. 946–1034, 2023.","ista":"Cipolloni G, Erdös L, Schröder DJ. 2023. Central limit theorem for linear eigenvalue statistics of non-Hermitian random matrices. Communications on Pure and Applied Mathematics. 76(5), 946–1034."},"publication":"Communications on Pure and Applied Mathematics","page":"946-1034","article_type":"original","date_published":"2023-05-01T00:00:00Z","scopus_import":"1","has_accepted_license":"1","article_processing_charge":"Yes (via OA deal)","day":"01","_id":"10405","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","intvolume":" 76","ddc":["510"],"status":"public","title":"Central limit theorem for linear eigenvalue statistics of non-Hermitian random matrices","oa_version":"Published Version","file":[{"file_name":"2023_CommPureMathematics_Cipolloni.pdf","access_level":"open_access","creator":"dernst","file_size":803440,"content_type":"application/pdf","file_id":"14388","relation":"main_file","date_updated":"2023-10-04T09:21:48Z","date_created":"2023-10-04T09:21:48Z","success":1,"checksum":"8346bc2642afb4ccb7f38979f41df5d9"}],"type":"journal_article","issue":"5","abstract":[{"lang":"eng","text":"We consider large non-Hermitian random matrices X with complex, independent, identically distributed centred entries and show that the linear statistics of their eigenvalues are asymptotically Gaussian for test functions having 2+ϵ derivatives. Previously this result was known only for a few special cases; either the test functions were required to be analytic [72], or the distribution of the matrix elements needed to be Gaussian [73], or at least match the Gaussian up to the first four moments [82, 56]. We find the exact dependence of the limiting variance on the fourth cumulant that was not known before. The proof relies on two novel ingredients: (i) a local law for a product of two resolvents of the Hermitisation of X with different spectral parameters and (ii) a coupling of several weakly dependent Dyson Brownian motions. These methods are also the key inputs for our analogous results on the linear eigenvalue statistics of real matrices X that are presented in the companion paper [32]. "}]},{"publication":"Dynamic Games and Applications","citation":{"mla":"Graham, Thomas, et al. “Where Do Mistakes Lead? A Survey of Games with Incompetent Players.” Dynamic Games and Applications, vol. 13, Springer Nature, 2023, pp. 231–64, doi:10.1007/s13235-022-00425-3.","short":"T. Graham, M. Kleshnina, J.A. Filar, Dynamic Games and Applications 13 (2023) 231–264.","chicago":"Graham, Thomas, Maria Kleshnina, and Jerzy A. Filar. “Where Do Mistakes Lead? A Survey of Games with Incompetent Players.” Dynamic Games and Applications. Springer Nature, 2023. https://doi.org/10.1007/s13235-022-00425-3.","ama":"Graham T, Kleshnina M, Filar JA. Where do mistakes lead? A survey of games with incompetent players. Dynamic Games and Applications. 2023;13:231-264. doi:10.1007/s13235-022-00425-3","ista":"Graham T, Kleshnina M, Filar JA. 2023. Where do mistakes lead? A survey of games with incompetent players. Dynamic Games and Applications. 13, 231–264.","ieee":"T. Graham, M. Kleshnina, and J. A. Filar, “Where do mistakes lead? A survey of games with incompetent players,” Dynamic Games and Applications, vol. 13. Springer Nature, pp. 231–264, 2023.","apa":"Graham, T., Kleshnina, M., & Filar, J. A. (2023). Where do mistakes lead? A survey of games with incompetent players. Dynamic Games and Applications. Springer Nature. https://doi.org/10.1007/s13235-022-00425-3"},"article_type":"original","page":"231-264","date_published":"2023-03-01T00:00:00Z","scopus_import":"1","day":"01","has_accepted_license":"1","article_processing_charge":"No","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"10770","ddc":["000"],"title":"Where do mistakes lead? A survey of games with incompetent players","status":"public","intvolume":" 13","file":[{"file_size":1890512,"content_type":"application/pdf","creator":"dernst","file_name":"2022_DynamicGamesApplic_Graham.pdf","access_level":"open_access","date_updated":"2022-02-21T08:54:17Z","date_created":"2022-02-21T08:54:17Z","checksum":"cd53b07e96f9030ddb348f305e5b58c7","success":1,"relation":"main_file","file_id":"10781"}],"oa_version":"Published Version","type":"journal_article","abstract":[{"lang":"eng","text":"Mathematical models often aim to describe a complicated mechanism in a cohesive and simple manner. However, reaching perfect balance between being simple enough or overly simplistic is a challenging task. Frequently, game-theoretic models have an underlying assumption that players, whenever they choose to execute a specific action, do so perfectly. In fact, it is rare that action execution perfectly coincides with intentions of individuals, giving rise to behavioural mistakes. The concept of incompetence of players was suggested to address this issue in game-theoretic settings. Under the assumption of incompetence, players have non-zero probabilities of executing a different strategy from the one they chose, leading to stochastic outcomes of the interactions. In this article, we survey results related to the concept of incompetence in classic as well as evolutionary game theory and provide several new results. We also suggest future extensions of the model and argue why it is important to take into account behavioural mistakes when analysing interactions among players in both economic and biological settings."}],"oa":1,"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"isi":["000753777100001"]},"quality_controlled":"1","isi":1,"project":[{"_id":"260C2330-B435-11E9-9278-68D0E5697425","grant_number":"754411","call_identifier":"H2020","name":"ISTplus - Postdoctoral Fellowships"}],"doi":"10.1007/s13235-022-00425-3","language":[{"iso":"eng"}],"month":"03","publication_identifier":{"issn":["2153-0785"],"eissn":["2153-0793"]},"acknowledgement":"The authors would like to acknowledge stimulating email discussions with Dr Wayne Lobb of W.A. Lobb LLC on the topic of evolutionary games. We also thank Dr Thomas Taimre for his input to the material in Sect. 3.\r\nThe authors would like to acknowledge partial support from the Australian Research Council under the Discovery grant DP180101602 and support by the European Union’s Horizon 2020 research and innovation program under the Marie Sklodowska-Curie Grant Agreement #754411.","year":"2023","publication_status":"published","publisher":"Springer Nature","department":[{"_id":"KrCh"}],"author":[{"full_name":"Graham, Thomas","first_name":"Thomas","last_name":"Graham"},{"full_name":"Kleshnina, Maria","id":"4E21749C-F248-11E8-B48F-1D18A9856A87","first_name":"Maria","last_name":"Kleshnina"},{"first_name":"Jerzy A.","last_name":"Filar","full_name":"Filar, Jerzy A."}],"date_updated":"2023-10-04T09:24:30Z","date_created":"2022-02-20T23:01:32Z","volume":13,"file_date_updated":"2022-02-21T08:54:17Z","ec_funded":1},{"language":[{"iso":"eng"}],"doi":"10.1007/s11118-021-09951-y","project":[{"name":"IST Austria Open Access Fund","_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854"},{"_id":"fc31cba2-9c52-11eb-aca3-ff467d239cd2","grant_number":"F6504","name":"Taming Complexity in Partial Differential Systems"},{"_id":"256E75B8-B435-11E9-9278-68D0E5697425","grant_number":"716117","call_identifier":"H2020","name":"Optimal Transport and Stochastic Dynamics"}],"quality_controlled":"1","isi":1,"oa":1,"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"isi":["000704213400001"],"arxiv":["2003.01366"]},"publication_identifier":{"eissn":["1572-929X"],"issn":["0926-2601"]},"month":"03","volume":58,"date_created":"2021-10-17T22:01:17Z","date_updated":"2023-10-04T09:19:12Z","author":[{"id":"ECEBF480-9E4F-11EA-B557-B0823DDC885E","orcid":"0000-0002-9881-6870","first_name":"Lorenzo","last_name":"Dello Schiavo","full_name":"Dello Schiavo, Lorenzo"}],"department":[{"_id":"JaMa"}],"publisher":"Springer Nature","publication_status":"published","year":"2023","acknowledgement":"The author is grateful to Professors Sergio Albeverio and Andreas Eberle, and to Dr. Kohei Suzuki, for fruitful conversations on the subject of the present work, and for respectively pointing out the references [1, 13], and [3, 20]. Finally, he is especially grateful to an anonymous Reviewer for their very careful reading and their suggestions which improved the readability of the paper.","ec_funded":1,"file_date_updated":"2023-10-04T09:18:59Z","date_published":"2023-03-01T00:00:00Z","page":"573-615","article_type":"original","citation":{"short":"L. Dello Schiavo, Potential Analysis 58 (2023) 573–615.","mla":"Dello Schiavo, Lorenzo. “Ergodic Decomposition of Dirichlet Forms via Direct Integrals and Applications.” Potential Analysis, vol. 58, Springer Nature, 2023, pp. 573–615, doi:10.1007/s11118-021-09951-y.","chicago":"Dello Schiavo, Lorenzo. “Ergodic Decomposition of Dirichlet Forms via Direct Integrals and Applications.” Potential Analysis. Springer Nature, 2023. https://doi.org/10.1007/s11118-021-09951-y.","ama":"Dello Schiavo L. Ergodic decomposition of Dirichlet forms via direct integrals and applications. Potential Analysis. 2023;58:573-615. doi:10.1007/s11118-021-09951-y","ieee":"L. Dello Schiavo, “Ergodic decomposition of Dirichlet forms via direct integrals and applications,” Potential Analysis, vol. 58. Springer Nature, pp. 573–615, 2023.","apa":"Dello Schiavo, L. (2023). Ergodic decomposition of Dirichlet forms via direct integrals and applications. Potential Analysis. Springer Nature. https://doi.org/10.1007/s11118-021-09951-y","ista":"Dello Schiavo L. 2023. Ergodic decomposition of Dirichlet forms via direct integrals and applications. Potential Analysis. 58, 573–615."},"publication":"Potential Analysis","has_accepted_license":"1","article_processing_charge":"Yes (via OA deal)","day":"01","scopus_import":"1","file":[{"date_updated":"2023-10-04T09:18:59Z","date_created":"2023-10-04T09:18:59Z","checksum":"625526482be300ca7281c91c30d41725","success":1,"relation":"main_file","file_id":"14387","content_type":"application/pdf","file_size":806391,"creator":"dernst","file_name":"2023_PotentialAnalysis_DelloSchiavo.pdf","access_level":"open_access"}],"oa_version":"Published Version","intvolume":" 58","status":"public","title":"Ergodic decomposition of Dirichlet forms via direct integrals and applications","ddc":["510"],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"10145","abstract":[{"lang":"eng","text":"We study direct integrals of quadratic and Dirichlet forms. We show that each quasi-regular Dirichlet space over a probability space admits a unique representation as a direct integral of irreducible Dirichlet spaces, quasi-regular for the same underlying topology. The same holds for each quasi-regular strongly local Dirichlet space over a metrizable Luzin σ-finite Radon measure space, and admitting carré du champ operator. In this case, the representation is only projectively unique."}],"type":"journal_article"},{"oa":1,"main_file_link":[{"url":"https://doi.org/10.1093/plcell/koac346","open_access":"1"}],"external_id":{"pmid":["36477566"]},"quality_controlled":"1","doi":"10.1093/plcell/koac346","language":[{"iso":"eng"}],"month":"06","publication_identifier":{"issn":["1040-4651"],"eissn":["1532-298X"]},"year":"2023","pmid":1,"publication_status":"published","publisher":"Oxford University Press","department":[{"_id":"XiFe"}],"author":[{"full_name":"Manavella, Pablo A","last_name":"Manavella","first_name":"Pablo A"},{"full_name":"Godoy Herz, Micaela A","first_name":"Micaela A","last_name":"Godoy Herz"},{"first_name":"Alberto R","last_name":"Kornblihtt","full_name":"Kornblihtt, Alberto R"},{"last_name":"Sorenson","first_name":"Reed","full_name":"Sorenson, Reed"},{"full_name":"Sieburth, Leslie E","first_name":"Leslie E","last_name":"Sieburth"},{"full_name":"Nakaminami, Kentaro","last_name":"Nakaminami","first_name":"Kentaro"},{"last_name":"Seki","first_name":"Motoaki","full_name":"Seki, Motoaki"},{"first_name":"Yiliang","last_name":"Ding","full_name":"Ding, Yiliang"},{"full_name":"Sun, Qianwen","last_name":"Sun","first_name":"Qianwen"},{"first_name":"Hunseung","last_name":"Kang","full_name":"Kang, Hunseung"},{"full_name":"Ariel, Federico D","first_name":"Federico D","last_name":"Ariel"},{"full_name":"Crespi, Martin","first_name":"Martin","last_name":"Crespi"},{"full_name":"Giudicatti, Axel J","first_name":"Axel J","last_name":"Giudicatti"},{"last_name":"Cai","first_name":"Qiang","full_name":"Cai, Qiang"},{"full_name":"Jin, Hailing","first_name":"Hailing","last_name":"Jin"},{"full_name":"Feng, Xiaoqi","orcid":"0000-0002-4008-1234","id":"e0164712-22ee-11ed-b12a-d80fcdf35958","last_name":"Feng","first_name":"Xiaoqi"},{"last_name":"Qi","first_name":"Yijun","full_name":"Qi, Yijun"},{"full_name":"Pikaard, Craig S","last_name":"Pikaard","first_name":"Craig S"}],"date_created":"2023-02-23T09:14:59Z","date_updated":"2023-10-04T09:48:43Z","volume":35,"article_number":"koac346","extern":"1","publication":"The Plant Cell","citation":{"mla":"Manavella, Pablo A., et al. “Beyond Transcription: Compelling Open Questions in Plant RNA Biology.” The Plant Cell, vol. 35, no. 6, koac346, Oxford University Press, 2023, doi:10.1093/plcell/koac346.","short":"P.A. Manavella, M.A. Godoy Herz, A.R. Kornblihtt, R. Sorenson, L.E. Sieburth, K. Nakaminami, M. Seki, Y. Ding, Q. Sun, H. Kang, F.D. Ariel, M. Crespi, A.J. Giudicatti, Q. Cai, H. Jin, X. Feng, Y. Qi, C.S. Pikaard, The Plant Cell 35 (2023).","chicago":"Manavella, Pablo A, Micaela A Godoy Herz, Alberto R Kornblihtt, Reed Sorenson, Leslie E Sieburth, Kentaro Nakaminami, Motoaki Seki, et al. “Beyond Transcription: Compelling Open Questions in Plant RNA Biology.” The Plant Cell. Oxford University Press, 2023. https://doi.org/10.1093/plcell/koac346.","ama":"Manavella PA, Godoy Herz MA, Kornblihtt AR, et al. Beyond transcription: compelling open questions in plant RNA biology. The Plant Cell. 2023;35(6). doi:10.1093/plcell/koac346","ista":"Manavella PA, Godoy Herz MA, Kornblihtt AR, Sorenson R, Sieburth LE, Nakaminami K, Seki M, Ding Y, Sun Q, Kang H, Ariel FD, Crespi M, Giudicatti AJ, Cai Q, Jin H, Feng X, Qi Y, Pikaard CS. 2023. Beyond transcription: compelling open questions in plant RNA biology. The Plant Cell. 35(6), koac346.","ieee":"P. A. Manavella et al., “Beyond transcription: compelling open questions in plant RNA biology,” The Plant Cell, vol. 35, no. 6. Oxford University Press, 2023.","apa":"Manavella, P. A., Godoy Herz, M. A., Kornblihtt, A. R., Sorenson, R., Sieburth, L. E., Nakaminami, K., … Pikaard, C. S. (2023). Beyond transcription: compelling open questions in plant RNA biology. The Plant Cell. Oxford University Press. https://doi.org/10.1093/plcell/koac346"},"article_type":"original","date_published":"2023-06-01T00:00:00Z","scopus_import":"1","keyword":["Cell Biology","Plant Science"],"day":"01","article_processing_charge":"No","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"12669","title":"Beyond transcription: compelling open questions in plant RNA biology","status":"public","intvolume":" 35","oa_version":"Published Version","type":"journal_article","abstract":[{"text":"The study of RNAs has become one of the most influential research fields in contemporary biology and biomedicine. In the last few years, new sequencing technologies have produced an explosion of new and exciting discoveries in the field but have also given rise to many open questions. Defining these questions, together with old, long-standing gaps in our knowledge, is the spirit of this article. The breadth of topics within RNA biology research is vast, and every aspect of the biology of these molecules contains countless exciting open questions. Here, we asked 12 groups to discuss their most compelling question among some plant RNA biology topics. The following vignettes cover RNA alternative splicing; RNA dynamics; RNA translation; RNA structures; R-loops; epitranscriptomics; long non-coding RNAs; small RNA production and their functions in crops; small RNAs during gametogenesis and in cross-kingdom RNA interference; and RNA-directed DNA methylation. In each section, we will present the current state-of-the-art in plant RNA biology research before asking the questions that will surely motivate future discoveries in the field. We hope this article will spark a debate about the future perspective on RNA biology and provoke novel reflections in the reader.","lang":"eng"}],"issue":"6"},{"scopus_import":"1","day":"01","has_accepted_license":"1","article_processing_charge":"Yes (in subscription journal)","article_type":"original","page":"1035-1055","publication":"Random Structures and Algorithms","citation":{"chicago":"Liebenau, Anita, Letícia Mattos, Walner Mendonca dos Santos, and Jozef Skokan. “Asymmetric Ramsey Properties of Random Graphs Involving Cliques and Cycles.” Random Structures and Algorithms. Wiley, 2023. https://doi.org/10.1002/rsa.21106.","mla":"Liebenau, Anita, et al. “Asymmetric Ramsey Properties of Random Graphs Involving Cliques and Cycles.” Random Structures and Algorithms, vol. 62, no. 4, Wiley, 2023, pp. 1035–55, doi:10.1002/rsa.21106.","short":"A. Liebenau, L. Mattos, W. Mendonca dos Santos, J. Skokan, Random Structures and Algorithms 62 (2023) 1035–1055.","ista":"Liebenau A, Mattos L, Mendonca dos Santos W, Skokan J. 2023. Asymmetric Ramsey properties of random graphs involving cliques and cycles. Random Structures and Algorithms. 62(4), 1035–1055.","ieee":"A. Liebenau, L. Mattos, W. Mendonca dos Santos, and J. Skokan, “Asymmetric Ramsey properties of random graphs involving cliques and cycles,” Random Structures and Algorithms, vol. 62, no. 4. Wiley, pp. 1035–1055, 2023.","apa":"Liebenau, A., Mattos, L., Mendonca dos Santos, W., & Skokan, J. (2023). Asymmetric Ramsey properties of random graphs involving cliques and cycles. Random Structures and Algorithms. Wiley. https://doi.org/10.1002/rsa.21106","ama":"Liebenau A, Mattos L, Mendonca dos Santos W, Skokan J. Asymmetric Ramsey properties of random graphs involving cliques and cycles. Random Structures and Algorithms. 2023;62(4):1035-1055. doi:10.1002/rsa.21106"},"date_published":"2023-07-01T00:00:00Z","type":"journal_article","abstract":[{"text":"We say that (Formula presented.) if, in every edge coloring (Formula presented.), we can find either a 1-colored copy of (Formula presented.) or a 2-colored copy of (Formula presented.). The well-known states that the threshold for the property (Formula presented.) is equal to (Formula presented.), where (Formula presented.) is given by (Formula presented.) for any pair of graphs (Formula presented.) and (Formula presented.) with (Formula presented.). In this article, we show the 0-statement of the Kohayakawa–Kreuter conjecture for every pair of cycles and cliques. ","lang":"eng"}],"issue":"4","title":"Asymmetric Ramsey properties of random graphs involving cliques and cycles","status":"public","ddc":["510"],"intvolume":" 62","_id":"11706","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Published Version","file":[{"creator":"dernst","content_type":"application/pdf","file_size":1362334,"file_name":"2023_RandomStructureAlgorithms_Liebenau.pdf","access_level":"open_access","date_updated":"2023-10-04T09:37:26Z","date_created":"2023-10-04T09:37:26Z","success":1,"checksum":"3a5969d0c512aef01c30f3dc81c6d59b","file_id":"14389","relation":"main_file"}],"month":"07","publication_identifier":{"issn":["1042-9832"],"eissn":["1098-2418"]},"quality_controlled":"1","isi":1,"external_id":{"isi":["000828530400001"]},"tmp":{"name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","image":"/images/cc_by_nc.png","short":"CC BY-NC (4.0)"},"oa":1,"language":[{"iso":"eng"}],"doi":"10.1002/rsa.21106","license":"https://creativecommons.org/licenses/by-nc/4.0/","file_date_updated":"2023-10-04T09:37:26Z","publication_status":"published","publisher":"Wiley","department":[{"_id":"MaKw"}],"year":"2023","acknowledgement":"This work was started at the thematic program GRAPHS@IMPA (January–March 2018), in Rio de Janeiro. We thank IMPA and the organisers for the hospitality and for providing a pleasant research environment. We thank Rob Morris for helpful discussions, and the anonymous referees for their careful reading and many helpful suggestions. Open Access funding enabled and organized by Projekt DEAL.\r\nA. Liebenau was supported by an ARC DECRA Fellowship Grant DE170100789. L. Mattos was supported by CAPES and by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany's Excellence Strategy – The Berlin Mathematics Research Center MATH+ (EXC-2046/1, project ID: 390685689). W. Mendonça was supported by CAPES project 88882.332408/2010-01.","date_updated":"2023-10-04T09:38:45Z","date_created":"2022-07-31T22:01:49Z","volume":62,"author":[{"full_name":"Liebenau, Anita","first_name":"Anita","last_name":"Liebenau"},{"first_name":"Letícia","last_name":"Mattos","full_name":"Mattos, Letícia"},{"full_name":"Mendonca Dos Santos, Walner","id":"12c6bd4d-2cd0-11ec-a0da-e28f42f65ebd","first_name":"Walner","last_name":"Mendonca Dos Santos"},{"full_name":"Skokan, Jozef","first_name":"Jozef","last_name":"Skokan"}]},{"author":[{"full_name":"Erdös, László","last_name":"Erdös","first_name":"László","orcid":"0000-0001-5366-9603","id":"4DBD5372-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Xu, Yuanyuan","id":"7902bdb1-a2a4-11eb-a164-c9216f71aea3","orcid":"0000-0003-1559-1205","first_name":"Yuanyuan","last_name":"Xu"}],"date_created":"2023-03-05T23:01:05Z","date_updated":"2023-10-04T10:21:07Z","volume":29,"year":"2023","publication_status":"published","publisher":"Bernoulli Society for Mathematical Statistics and Probability","department":[{"_id":"LaEr"}],"ec_funded":1,"doi":"10.3150/22-BEJ1490","language":[{"iso":"eng"}],"oa":1,"main_file_link":[{"url":"https://arxiv.org/abs/2112.12093","open_access":"1"}],"external_id":{"arxiv":["2112.12093 "],"isi":["000947270100008"]},"isi":1,"quality_controlled":"1","project":[{"name":"Random matrices beyond Wigner-Dyson-Mehta","call_identifier":"H2020","grant_number":"101020331","_id":"62796744-2b32-11ec-9570-940b20777f1d"}],"month":"05","publication_identifier":{"issn":["1350-7265"]},"oa_version":"Preprint","_id":"12707","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","title":"Small deviation estimates for the largest eigenvalue of Wigner matrices","intvolume":" 29","abstract":[{"lang":"eng","text":"We establish precise right-tail small deviation estimates for the largest eigenvalue of real symmetric and complex Hermitian matrices whose entries are independent random variables with uniformly bounded moments. The proof relies on a Green function comparison along a continuous interpolating matrix flow for a long time. Less precise estimates are also obtained in the left tail."}],"issue":"2","type":"journal_article","date_published":"2023-05-01T00:00:00Z","publication":"Bernoulli","citation":{"mla":"Erdös, László, and Yuanyuan Xu. “Small Deviation Estimates for the Largest Eigenvalue of Wigner Matrices.” Bernoulli, vol. 29, no. 2, Bernoulli Society for Mathematical Statistics and Probability, 2023, pp. 1063–79, doi:10.3150/22-BEJ1490.","short":"L. Erdös, Y. Xu, Bernoulli 29 (2023) 1063–1079.","chicago":"Erdös, László, and Yuanyuan Xu. “Small Deviation Estimates for the Largest Eigenvalue of Wigner Matrices.” Bernoulli. Bernoulli Society for Mathematical Statistics and Probability, 2023. https://doi.org/10.3150/22-BEJ1490.","ama":"Erdös L, Xu Y. Small deviation estimates for the largest eigenvalue of Wigner matrices. Bernoulli. 2023;29(2):1063-1079. doi:10.3150/22-BEJ1490","ista":"Erdös L, Xu Y. 2023. Small deviation estimates for the largest eigenvalue of Wigner matrices. Bernoulli. 29(2), 1063–1079.","apa":"Erdös, L., & Xu, Y. (2023). Small deviation estimates for the largest eigenvalue of Wigner matrices. Bernoulli. Bernoulli Society for Mathematical Statistics and Probability. https://doi.org/10.3150/22-BEJ1490","ieee":"L. Erdös and Y. Xu, “Small deviation estimates for the largest eigenvalue of Wigner matrices,” Bernoulli, vol. 29, no. 2. Bernoulli Society for Mathematical Statistics and Probability, pp. 1063–1079, 2023."},"article_type":"original","page":"1063-1079","day":"01","article_processing_charge":"No","scopus_import":"1"},{"publication_status":"published","publisher":"Springer Nature","department":[{"_id":"EdHa"},{"_id":"AnKi"}],"acknowledgement":"We thank S. Hippenmeyer for the reagents and C. P. Heisenberg, J. Briscoe and K. Page for comments on the manuscript. This work was supported by IST Austria; the European Research Council under Horizon 2020 research and innovation programme grant no. 680037 and Horizon Europe grant 101044579 (A.K.); Austrian Science Fund (FWF): F78 (Stem Cell Modulation) (A.K.); ISTFELLOW postdoctoral program (A.S.); Narodowe Centrum Nauki, Poland SONATA, 2017/26/D/NZ2/00454 (M.Z.); and the Polish National Agency for Academic Exchange (M.Z.).","year":"2023","date_updated":"2023-10-04T11:14:05Z","date_created":"2023-04-16T22:01:09Z","volume":19,"author":[{"full_name":"Bocanegra, Laura","id":"4896F754-F248-11E8-B48F-1D18A9856A87","last_name":"Bocanegra","first_name":"Laura"},{"id":"76250f9f-3a21-11eb-9a80-a6180a0d7958","first_name":"Amrita","last_name":"Singh","full_name":"Singh, Amrita"},{"full_name":"Hannezo, Edouard B","last_name":"Hannezo","first_name":"Edouard B","orcid":"0000-0001-6005-1561","id":"3A9DB764-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Zagórski, Marcin P","last_name":"Zagórski","first_name":"Marcin P","orcid":"0000-0001-7896-7762","id":"343DA0DC-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Kicheva, Anna","last_name":"Kicheva","first_name":"Anna","orcid":"0000-0003-4509-4998","id":"3959A2A0-F248-11E8-B48F-1D18A9856A87"}],"related_material":{"record":[{"id":"13081","status":"public","relation":"dissertation_contains"}]},"file_date_updated":"2023-10-04T11:13:28Z","ec_funded":1,"quality_controlled":"1","isi":1,"project":[{"grant_number":"680037","_id":"B6FC0238-B512-11E9-945C-1524E6697425","name":"Coordination of Patterning And Growth In the Spinal Cord","call_identifier":"H2020"},{"name":"Mechanisms of tissue size regulation in spinal cord development","_id":"bd7e737f-d553-11ed-ba76-d69ffb5ee3aa","grant_number":"101044579"},{"grant_number":"F07802","_id":"059DF620-7A3F-11EA-A408-12923DDC885E","name":"Morphogen control of growth and pattern in the spinal cord"},{"grant_number":"291734","_id":"25681D80-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","name":"International IST Postdoc Fellowship Programme"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"external_id":{"isi":["000964029300003"]},"language":[{"iso":"eng"}],"doi":"10.1038/s41567-023-01977-w","month":"07","publication_identifier":{"issn":["1745-2473"],"eissn":["1745-2481"]},"status":"public","ddc":["570"],"title":"Cell cycle dynamics control fluidity of the developing mouse neuroepithelium","intvolume":" 19","_id":"12837","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file":[{"creator":"dernst","content_type":"application/pdf","file_size":5532285,"access_level":"open_access","file_name":"2023_NaturePhysics_Boncanegra.pdf","success":1,"checksum":"858225a4205b74406e5045006cdd853f","date_created":"2023-10-04T11:13:28Z","date_updated":"2023-10-04T11:13:28Z","file_id":"14392","relation":"main_file"}],"oa_version":"Published Version","type":"journal_article","abstract":[{"lang":"eng","text":"As developing tissues grow in size and undergo morphogenetic changes, their material properties may be altered. Such changes result from tension dynamics at cell contacts or cellular jamming. Yet, in many cases, the cellular mechanisms controlling the physical state of growing tissues are unclear. We found that at early developmental stages, the epithelium in the developing mouse spinal cord maintains both high junctional tension and high fluidity. This is achieved via a mechanism in which interkinetic nuclear movements generate cell area dynamics that drive extensive cell rearrangements. Over time, the cell proliferation rate declines, effectively solidifying the tissue. Thus, unlike well-studied jamming transitions, the solidification uncovered here resembles a glass transition that depends on the dynamical stresses generated by proliferation and differentiation. Our finding that the fluidity of developing epithelia is linked to interkinetic nuclear movements and the dynamics of growth is likely to be relevant to multiple developing tissues."}],"article_type":"original","page":"1050-1058","publication":"Nature Physics","citation":{"ista":"Bocanegra L, Singh A, Hannezo EB, Zagórski MP, Kicheva A. 2023. Cell cycle dynamics control fluidity of the developing mouse neuroepithelium. Nature Physics. 19, 1050–1058.","ieee":"L. Bocanegra, A. Singh, E. B. Hannezo, M. P. Zagórski, and A. Kicheva, “Cell cycle dynamics control fluidity of the developing mouse neuroepithelium,” Nature Physics, vol. 19. Springer Nature, pp. 1050–1058, 2023.","apa":"Bocanegra, L., Singh, A., Hannezo, E. B., Zagórski, M. P., & Kicheva, A. (2023). Cell cycle dynamics control fluidity of the developing mouse neuroepithelium. Nature Physics. Springer Nature. https://doi.org/10.1038/s41567-023-01977-w","ama":"Bocanegra L, Singh A, Hannezo EB, Zagórski MP, Kicheva A. Cell cycle dynamics control fluidity of the developing mouse neuroepithelium. Nature Physics. 2023;19:1050-1058. doi:10.1038/s41567-023-01977-w","chicago":"Bocanegra, Laura, Amrita Singh, Edouard B Hannezo, Marcin P Zagórski, and Anna Kicheva. “Cell Cycle Dynamics Control Fluidity of the Developing Mouse Neuroepithelium.” Nature Physics. Springer Nature, 2023. https://doi.org/10.1038/s41567-023-01977-w.","mla":"Bocanegra, Laura, et al. “Cell Cycle Dynamics Control Fluidity of the Developing Mouse Neuroepithelium.” Nature Physics, vol. 19, Springer Nature, 2023, pp. 1050–58, doi:10.1038/s41567-023-01977-w.","short":"L. Bocanegra, A. Singh, E.B. Hannezo, M.P. Zagórski, A. Kicheva, Nature Physics 19 (2023) 1050–1058."},"date_published":"2023-07-01T00:00:00Z","scopus_import":"1","day":"01","has_accepted_license":"1","article_processing_charge":"No"},{"abstract":[{"lang":"eng","text":"During development, tissues undergo changes in size and shape to form functional organs. Distinct cellular processes such as cell division and cell rearrangements underlie tissue morphogenesis. Yet how the distinct processes are controlled and coordinated, and how they contribute to morphogenesis is poorly understood. In our study, we addressed these questions using the developing mouse neural tube. This epithelial organ transforms from a flat epithelial sheet to an epithelial tube while increasing in size and undergoing morpho-gen-mediated patterning. The extent and mechanism of neural progenitor rearrangement within the developing mouse neuroepithelium is unknown. To investigate this, we per-formed high resolution lineage tracing analysis to quantify the extent of epithelial rear-rangement at different stages of neural tube development. We quantitatively described the relationship between apical cell size with cell cycle dependent interkinetic nuclear migra-tions (IKNM) and performed high cellular resolution live imaging of the neuroepithelium to study the dynamics of junctional remodeling. Furthermore, developed a vertex model of the neuroepithelium to investigate the quantitative contribution of cell proliferation, cell differentiation and mechanical properties to the epithelial rearrangement dynamics and validated the model predictions through functional experiments. Our analysis revealed that at early developmental stages, the apical cell area kinetics driven by IKNM induce high lev-els of cell rearrangements in a regime of high junctional tension and contractility. After E9.5, there is a sharp decline in the extent of cell rearrangements, suggesting that the epi-thelium transitions from a fluid-like to a solid-like state. We found that this transition is regulated by the growth rate of the tissue, rather than by changes in cell-cell adhesion and contractile forces. Overall, our study provides a quantitative description of the relationship between tissue growth, cell cycle dynamics, epithelia rearrangements and the emergent tissue material properties, and novel insights on how epithelial cell dynamics influences tissue morphogenesis."}],"alternative_title":["ISTA Thesis"],"type":"dissertation","oa_version":"Published Version","file":[{"relation":"source_file","file_id":"13089","date_created":"2023-05-25T06:32:12Z","date_updated":"2023-05-25T06:32:12Z","checksum":"74f3f89e59a0189bee53ebfad9c1b9af","file_name":"Thesis_final_LauraBocanegra.docx","access_level":"closed","content_type":"application/vnd.openxmlformats-officedocument.wordprocessingml.document","file_size":25615534,"creator":"lbocaneg"},{"file_name":"TotalFinal_Thesis_LauraBocanegraArx.pdf","embargo_to":"open_access","access_level":"closed","creator":"lbocaneg","file_size":12386046,"content_type":"application/pdf","embargo":"2024-05-31","file_id":"13090","relation":"main_file","date_created":"2023-05-25T06:32:16Z","date_updated":"2023-05-25T06:32:16Z","checksum":"c6cdef6323eacfb4b7a8af20f32eae97"}],"title":"Epithelial dynamics during mouse neural tube development","status":"public","ddc":["570"],"user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","_id":"13081","has_accepted_license":"1","article_processing_charge":"No","day":"23","date_published":"2023-05-23T00:00:00Z","page":"93","citation":{"mla":"Bocanegra, Laura. Epithelial Dynamics during Mouse Neural Tube Development. Institute of Science and Technology Austria, 2023, doi:10.15479/at:ista:13081.","short":"L. Bocanegra, Epithelial Dynamics during Mouse Neural Tube Development, Institute of Science and Technology Austria, 2023.","chicago":"Bocanegra, Laura. “Epithelial Dynamics during Mouse Neural Tube Development.” Institute of Science and Technology Austria, 2023. https://doi.org/10.15479/at:ista:13081.","ama":"Bocanegra L. Epithelial dynamics during mouse neural tube development. 2023. doi:10.15479/at:ista:13081","ista":"Bocanegra L. 2023. Epithelial dynamics during mouse neural tube development. Institute of Science and Technology Austria.","apa":"Bocanegra, L. (2023). Epithelial dynamics during mouse neural tube development. Institute of Science and Technology Austria. https://doi.org/10.15479/at:ista:13081","ieee":"L. Bocanegra, “Epithelial dynamics during mouse neural tube development,” Institute of Science and Technology Austria, 2023."},"file_date_updated":"2023-05-25T06:32:16Z","date_updated":"2023-10-04T11:14:04Z","date_created":"2023-05-23T19:10:42Z","related_material":{"record":[{"id":"9349","status":"public","relation":"part_of_dissertation"},{"id":"12837","status":"public","relation":"part_of_dissertation"}]},"author":[{"full_name":"Bocanegra, Laura","last_name":"Bocanegra","first_name":"Laura","id":"4896F754-F248-11E8-B48F-1D18A9856A87"}],"publisher":"Institute of Science and Technology Austria","department":[{"_id":"GradSch"},{"_id":"AnKi"}],"publication_status":"published","year":"2023","publication_identifier":{"issn":["2663 - 337X"]},"month":"05","language":[{"iso":"eng"}],"acknowledged_ssus":[{"_id":"Bio"},{"_id":"LifeSc"}],"supervisor":[{"orcid":"0000-0003-4509-4998","id":"3959A2A0-F248-11E8-B48F-1D18A9856A87","last_name":"Kicheva","first_name":"Anna","full_name":"Kicheva, Anna"}],"degree_awarded":"PhD","doi":"10.15479/at:ista:13081","tmp":{"name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","short":"CC BY-NC-ND (4.0)","image":"/images/cc_by_nc_nd.png"}},{"volume":30,"date_updated":"2023-10-04T11:23:10Z","date_created":"2023-04-23T22:01:03Z","author":[{"full_name":"Filipović Marijić, Vlatka","last_name":"Filipović Marijić","first_name":"Vlatka"},{"full_name":"Krasnici, Nesrete","id":"cb5852d4-287f-11ed-baf0-bc1dd2d5c745","first_name":"Nesrete","last_name":"Krasnici"},{"first_name":"Damir","last_name":"Valić","full_name":"Valić, Damir"},{"full_name":"Kapetanović, Damir","last_name":"Kapetanović","first_name":"Damir"},{"last_name":"Vardić Smrzlić","first_name":"Irena","full_name":"Vardić Smrzlić, Irena"},{"full_name":"Jordanova, Maja","last_name":"Jordanova","first_name":"Maja"},{"last_name":"Rebok","first_name":"Katerina","full_name":"Rebok, Katerina"},{"last_name":"Ramani","first_name":"Sheriban","full_name":"Ramani, Sheriban"},{"full_name":"Kostov, Vasil","first_name":"Vasil","last_name":"Kostov"},{"full_name":"Nastova, Rodne","last_name":"Nastova","first_name":"Rodne"},{"full_name":"Dragun, Zrinka","last_name":"Dragun","first_name":"Zrinka"}],"department":[{"_id":"LifeSc"}],"publisher":"Springer Nature","publication_status":"published","pmid":1,"year":"2023","acknowledgement":"The authors are grateful to Dr. Nevenka Mikac for the opportunity to perform metal measurements on HR ICP-MS. This research was funded by the Ministry of Science, Education and Sport of the Republic of Croatia (projects No. 098–0982934-2721 and 098–1782739-2749). The sampling was carried out as a part of two Croatian-Macedonian bilateral projects: “The assessment of availability and effects of metals on fish in the rivers under the impact of mining activities” and “Bacterial and parasitical communities of chub as indicators of the status of environment exposed to mining activities.”","language":[{"iso":"eng"}],"doi":"10.1007/s11356-023-26844-2","isi":1,"quality_controlled":"1","external_id":{"isi":["000970917900012"],"pmid":["37055686"]},"publication_identifier":{"eissn":["1614-7499"],"issn":["0944-1344"]},"month":"05","oa_version":"None","intvolume":" 30","status":"public","title":"Pollution impact on metal and biomarker responses in intestinal cytosol of freshwater fish","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"12863","abstract":[{"lang":"eng","text":"In the present study, essential and nonessential metal content and biomarker responses were investigated in the intestine of fish collected from the areas polluted by mining. Our objective was to determine metal and biomarker levels in tissue responsible for dietary intake, which is rarely studied in water pollution research. The study was conducted in the Bregalnica River, reference location, and in the Zletovska and Kriva Rivers (the Republic of North Macedonia), which are directly influenced by the active mines Zletovo and Toranica, respectively. Biological responses were analyzed in Vardar chub (Squalius vardarensis; Karaman, 1928), using for the first time intestinal cytosol as a potentially toxic cell fraction, since metal sensitivity is mostly associated with cytosol. Cytosolic metal levels were higher in fish under the influence of mining (Tl, Li, Cs, Mo, Sr, Cd, Rb, and Cu in the Zletovska River and Cr, Pb, and Se in the Kriva River compared to the Bregalnica River in both seasons). The same trend was evident for total proteins, biomarkers of general stress, and metallothioneins, biomarkers of metal exposure, indicating cellular disturbances in the intestine, the primary site of dietary metal uptake. The association of cytosolic Cu and Cd at all locations pointed to similar pathways and homeostasis of these metallothionein-binding metals. Comparison with other indicator tissues showed that metal concentrations were higher in the intestine of fish from mining-affected areas than in the liver and gills. In general, these results indicated the importance of dietary metal pathways, and cytosolic metal fraction in assessing pollution impacts in freshwater ecosystems."}],"type":"journal_article","date_published":"2023-05-01T00:00:00Z","page":"63510-63521","article_type":"original","citation":{"ama":"Filipović Marijić V, Krasnici N, Valić D, et al. Pollution impact on metal and biomarker responses in intestinal cytosol of freshwater fish. Environmental Science and Pollution Research. 2023;30:63510-63521. doi:10.1007/s11356-023-26844-2","apa":"Filipović Marijić, V., Krasnici, N., Valić, D., Kapetanović, D., Vardić Smrzlić, I., Jordanova, M., … Dragun, Z. (2023). Pollution impact on metal and biomarker responses in intestinal cytosol of freshwater fish. Environmental Science and Pollution Research. Springer Nature. https://doi.org/10.1007/s11356-023-26844-2","ieee":"V. Filipović Marijić et al., “Pollution impact on metal and biomarker responses in intestinal cytosol of freshwater fish,” Environmental Science and Pollution Research, vol. 30. Springer Nature, pp. 63510–63521, 2023.","ista":"Filipović Marijić V, Krasnici N, Valić D, Kapetanović D, Vardić Smrzlić I, Jordanova M, Rebok K, Ramani S, Kostov V, Nastova R, Dragun Z. 2023. Pollution impact on metal and biomarker responses in intestinal cytosol of freshwater fish. Environmental Science and Pollution Research. 30, 63510–63521.","short":"V. Filipović Marijić, N. Krasnici, D. Valić, D. Kapetanović, I. Vardić Smrzlić, M. Jordanova, K. Rebok, S. Ramani, V. Kostov, R. Nastova, Z. Dragun, Environmental Science and Pollution Research 30 (2023) 63510–63521.","mla":"Filipović Marijić, Vlatka, et al. “Pollution Impact on Metal and Biomarker Responses in Intestinal Cytosol of Freshwater Fish.” Environmental Science and Pollution Research, vol. 30, Springer Nature, 2023, pp. 63510–21, doi:10.1007/s11356-023-26844-2.","chicago":"Filipović Marijić, Vlatka, Nesrete Krasnici, Damir Valić, Damir Kapetanović, Irena Vardić Smrzlić, Maja Jordanova, Katerina Rebok, et al. “Pollution Impact on Metal and Biomarker Responses in Intestinal Cytosol of Freshwater Fish.” Environmental Science and Pollution Research. Springer Nature, 2023. https://doi.org/10.1007/s11356-023-26844-2."},"publication":"Environmental Science and Pollution Research","article_processing_charge":"No","day":"01","scopus_import":"1"},{"type":"journal_article","abstract":[{"lang":"eng","text":"Coherent control and manipulation of quantum degrees of freedom such as spins forms the basis of emerging quantum technologies. In this context, the robust valley degree of freedom and the associated valley pseudospin found in two-dimensional transition metal dichalcogenides is a highly attractive platform. Valley polarization and coherent superposition of valley states have been observed in these systems even up to room temperature. Control of valley coherence is an important building block for the implementation of valley qubit. Large magnetic fields or high-power lasers have been used in the past to demonstrate the control (initialization and rotation) of the valley coherent states. Here, the control of layer–valley coherence via strong coupling of valley excitons in bilayer WS2 to microcavity photons is demonstrated by exploiting the pseudomagnetic field arising in optical cavities owing to the transverse electric–transverse magnetic (TE–TM)mode splitting. The use of photonic structures to generate pseudomagnetic fields which can be used to manipulate exciton-polaritons presents an attractive approach to control optical responses without the need for large magnets or high-intensity optical pump powers."}],"issue":"13","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"12836","title":"Optical manipulation of Layer–Valley coherence via strong exciton–photon coupling in microcavities","status":"public","intvolume":" 11","oa_version":"Preprint","scopus_import":"1","day":"04","article_processing_charge":"No","publication":"Advanced Optical Materials","citation":{"ista":"Khatoniar M, Yama N, Ghazaryan A, Guddala S, Ghaemi P, Majumdar K, Menon V. 2023. Optical manipulation of Layer–Valley coherence via strong exciton–photon coupling in microcavities. Advanced Optical Materials. 11(13), 2202631.","apa":"Khatoniar, M., Yama, N., Ghazaryan, A., Guddala, S., Ghaemi, P., Majumdar, K., & Menon, V. (2023). Optical manipulation of Layer–Valley coherence via strong exciton–photon coupling in microcavities. Advanced Optical Materials. Wiley. https://doi.org/10.1002/adom.202202631","ieee":"M. Khatoniar et al., “Optical manipulation of Layer–Valley coherence via strong exciton–photon coupling in microcavities,” Advanced Optical Materials, vol. 11, no. 13. Wiley, 2023.","ama":"Khatoniar M, Yama N, Ghazaryan A, et al. Optical manipulation of Layer–Valley coherence via strong exciton–photon coupling in microcavities. Advanced Optical Materials. 2023;11(13). doi:10.1002/adom.202202631","chicago":"Khatoniar, Mandeep, Nicholas Yama, Areg Ghazaryan, Sriram Guddala, Pouyan Ghaemi, Kausik Majumdar, and Vinod Menon. “Optical Manipulation of Layer–Valley Coherence via Strong Exciton–Photon Coupling in Microcavities.” Advanced Optical Materials. Wiley, 2023. https://doi.org/10.1002/adom.202202631.","mla":"Khatoniar, Mandeep, et al. “Optical Manipulation of Layer–Valley Coherence via Strong Exciton–Photon Coupling in Microcavities.” Advanced Optical Materials, vol. 11, no. 13, 2202631, Wiley, 2023, doi:10.1002/adom.202202631.","short":"M. Khatoniar, N. Yama, A. Ghazaryan, S. Guddala, P. Ghaemi, K. Majumdar, V. Menon, Advanced Optical Materials 11 (2023)."},"article_type":"original","date_published":"2023-07-04T00:00:00Z","article_number":"2202631","acknowledgement":"The authors acknowledge insightful discussions with Prof. Wang Yao and graphics by Rezlind Bushati. M.K. and N.Y. acknowledge support from NSF grants NSF DMR-1709996 and NSF OMA 1936276. S.G. was supported by the Army Research Office Multidisciplinary University Research Initiative program (W911NF-17-1-0312) and V.M.M. by the Army Research Office grant (W911NF-22-1-0091). K.M acknowledges the SPARC program that supported his collaboration with the CUNY team. The authors acknowledge the Nanofabrication facility at the CUNY Advanced Science Research Center where the cavity devices were fabricated.","year":"2023","publication_status":"published","publisher":"Wiley","department":[{"_id":"MiLe"}],"author":[{"last_name":"Khatoniar","first_name":"Mandeep","full_name":"Khatoniar, Mandeep"},{"full_name":"Yama, Nicholas","last_name":"Yama","first_name":"Nicholas"},{"full_name":"Ghazaryan, Areg","first_name":"Areg","last_name":"Ghazaryan","id":"4AF46FD6-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-9666-3543"},{"last_name":"Guddala","first_name":"Sriram","full_name":"Guddala, Sriram"},{"first_name":"Pouyan","last_name":"Ghaemi","full_name":"Ghaemi, Pouyan"},{"full_name":"Majumdar, Kausik","last_name":"Majumdar","first_name":"Kausik"},{"full_name":"Menon, Vinod","first_name":"Vinod","last_name":"Menon"}],"date_created":"2023-04-16T22:01:09Z","date_updated":"2023-10-04T11:15:17Z","volume":11,"month":"07","publication_identifier":{"eissn":["2195-1071"]},"external_id":{"arxiv":["2211.08755"],"isi":["000963866700001"]},"oa":1,"main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2211.08755","open_access":"1"}],"quality_controlled":"1","isi":1,"doi":"10.1002/adom.202202631","language":[{"iso":"eng"}]},{"date_published":"2023-04-28T00:00:00Z","article_type":"original","publication":"Calculus of Variations and Partial Differential Equations","citation":{"chicago":"Gladbach, Peter, Eva Kopfer, Jan Maas, and Lorenzo Portinale. “Homogenisation of Dynamical Optimal Transport on Periodic Graphs.” Calculus of Variations and Partial Differential Equations. Springer Nature, 2023. https://doi.org/10.1007/s00526-023-02472-z.","mla":"Gladbach, Peter, et al. “Homogenisation of Dynamical Optimal Transport on Periodic Graphs.” Calculus of Variations and Partial Differential Equations, vol. 62, no. 5, 143, Springer Nature, 2023, doi:10.1007/s00526-023-02472-z.","short":"P. Gladbach, E. Kopfer, J. Maas, L. Portinale, Calculus of Variations and Partial Differential Equations 62 (2023).","ista":"Gladbach P, Kopfer E, Maas J, Portinale L. 2023. Homogenisation of dynamical optimal transport on periodic graphs. Calculus of Variations and Partial Differential Equations. 62(5), 143.","ieee":"P. Gladbach, E. Kopfer, J. Maas, and L. Portinale, “Homogenisation of dynamical optimal transport on periodic graphs,” Calculus of Variations and Partial Differential Equations, vol. 62, no. 5. Springer Nature, 2023.","apa":"Gladbach, P., Kopfer, E., Maas, J., & Portinale, L. (2023). Homogenisation of dynamical optimal transport on periodic graphs. Calculus of Variations and Partial Differential Equations. Springer Nature. https://doi.org/10.1007/s00526-023-02472-z","ama":"Gladbach P, Kopfer E, Maas J, Portinale L. Homogenisation of dynamical optimal transport on periodic graphs. Calculus of Variations and Partial Differential Equations. 2023;62(5). doi:10.1007/s00526-023-02472-z"},"day":"28","has_accepted_license":"1","article_processing_charge":"Yes (via OA deal)","scopus_import":"1","file":[{"file_id":"14393","relation":"main_file","success":1,"checksum":"359bee38d94b7e0aa73925063cb8884d","date_updated":"2023-10-04T11:34:10Z","date_created":"2023-10-04T11:34:10Z","access_level":"open_access","file_name":"2023_CalculusEquations_Gladbach.pdf","creator":"dernst","content_type":"application/pdf","file_size":1240995}],"oa_version":"Published Version","status":"public","ddc":["510"],"title":"Homogenisation of dynamical optimal transport on periodic graphs","intvolume":" 62","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"12959","abstract":[{"lang":"eng","text":"This paper deals with the large-scale behaviour of dynamical optimal transport on Zd\r\n-periodic graphs with general lower semicontinuous and convex energy densities. Our main contribution is a homogenisation result that describes the effective behaviour of the discrete problems in terms of a continuous optimal transport problem. The effective energy density can be explicitly expressed in terms of a cell formula, which is a finite-dimensional convex programming problem that depends non-trivially on the local geometry of the discrete graph and the discrete energy density. Our homogenisation result is derived from a Γ\r\n-convergence result for action functionals on curves of measures, which we prove under very mild growth conditions on the energy density. We investigate the cell formula in several cases of interest, including finite-volume discretisations of the Wasserstein distance, where non-trivial limiting behaviour occurs."}],"issue":"5","type":"journal_article","language":[{"iso":"eng"}],"doi":"10.1007/s00526-023-02472-z","quality_controlled":"1","isi":1,"project":[{"_id":"256E75B8-B435-11E9-9278-68D0E5697425","grant_number":"716117","call_identifier":"H2020","name":"Optimal Transport and Stochastic Dynamics"},{"_id":"fc31cba2-9c52-11eb-aca3-ff467d239cd2","grant_number":"F6504","name":"Taming Complexity in Partial Differential Systems"},{"call_identifier":"FWF","name":"Dissipation and Dispersion in Nonlinear Partial Differential Equations","_id":"260788DE-B435-11E9-9278-68D0E5697425"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"isi":["000980588900001"],"arxiv":["2110.15321"]},"oa":1,"month":"04","publication_identifier":{"issn":["0944-2669"],"eissn":["1432-0835"]},"date_created":"2023-05-14T22:01:00Z","date_updated":"2023-10-04T11:34:49Z","volume":62,"author":[{"last_name":"Gladbach","first_name":"Peter","full_name":"Gladbach, Peter"},{"last_name":"Kopfer","first_name":"Eva","full_name":"Kopfer, Eva"},{"full_name":"Maas, Jan","id":"4C5696CE-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-0845-1338","first_name":"Jan","last_name":"Maas"},{"full_name":"Portinale, Lorenzo","id":"30AD2CBC-F248-11E8-B48F-1D18A9856A87","first_name":"Lorenzo","last_name":"Portinale"}],"publication_status":"published","department":[{"_id":"JaMa"}],"publisher":"Springer Nature","acknowledgement":"J.M. gratefully acknowledges support by the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (Grant Agreement No. 716117). J.M and L.P. also acknowledge support from the Austrian Science Fund (FWF), grants No F65 and W1245. E.K. gratefully acknowledges support by the German Research Foundation through the Hausdorff Center for Mathematics and the Collaborative Research Center 1060. P.G. is partially funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation)—350398276. We thank the anonymous reviewer for the careful reading and for useful suggestions. Open access funding provided by Austrian Science Fund (FWF).","year":"2023","file_date_updated":"2023-10-04T11:34:10Z","ec_funded":1,"article_number":"143"},{"oa_version":"None","status":"public","title":"Thermoelectric performance of surface-engineered Cu1.5–xTe–Cu2Se nanocomposites","intvolume":" 17","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"12915","abstract":[{"text":"Cu2–xS and Cu2–xSe have recently been reported as promising thermoelectric (TE) materials for medium-temperature applications. In contrast, Cu2–xTe, another member of the copper chalcogenide family, typically exhibits low Seebeck coefficients that limit its potential to achieve a superior thermoelectric figure of merit, zT, particularly in the low-temperature range where this material could be effective. To address this, we investigated the TE performance of Cu1.5–xTe–Cu2Se nanocomposites by consolidating surface-engineered Cu1.5Te nanocrystals. This surface engineering strategy allows for precise adjustment of Cu/Te ratios and results in a reversible phase transition at around 600 K in Cu1.5–xTe–Cu2Se nanocomposites, as systematically confirmed by in situ high-temperature X-ray diffraction combined with differential scanning calorimetry analysis. The phase transition leads to a conversion from metallic-like to semiconducting-like TE properties. Additionally, a layer of Cu2Se generated around Cu1.5–xTe nanoparticles effectively inhibits Cu1.5–xTe grain growth, minimizing thermal conductivity and decreasing hole concentration. These properties indicate that copper telluride based compounds have a promising thermoelectric potential, translated into a high dimensionless zT of 1.3 at 560 K.","lang":"eng"}],"issue":"9","type":"journal_article","date_published":"2023-05-09T00:00:00Z","article_type":"original","page":"8442-8452","publication":"ACS Nano","citation":{"ama":"Xing C, Zhang Y, Xiao K, et al. Thermoelectric performance of surface-engineered Cu1.5–xTe–Cu2Se nanocomposites. ACS Nano. 2023;17(9):8442-8452. doi:10.1021/acsnano.3c00495","apa":"Xing, C., Zhang, Y., Xiao, K., Han, X., Liu, Y., Nan, B., … Cabot, A. (2023). Thermoelectric performance of surface-engineered Cu1.5–xTe–Cu2Se nanocomposites. ACS Nano. American Chemical Society. https://doi.org/10.1021/acsnano.3c00495","ieee":"C. Xing et al., “Thermoelectric performance of surface-engineered Cu1.5–xTe–Cu2Se nanocomposites,” ACS Nano, vol. 17, no. 9. American Chemical Society, pp. 8442–8452, 2023.","ista":"Xing C, Zhang Y, Xiao K, Han X, Liu Y, Nan B, Ramon MG, Lim KH, Li J, Arbiol J, Poudel B, Nozariasbmarz A, Li W, Ibáñez M, Cabot A. 2023. Thermoelectric performance of surface-engineered Cu1.5–xTe–Cu2Se nanocomposites. ACS Nano. 17(9), 8442–8452.","short":"C. Xing, Y. Zhang, K. Xiao, X. Han, Y. Liu, B. Nan, M.G. Ramon, K.H. Lim, J. Li, J. Arbiol, B. Poudel, A. Nozariasbmarz, W. Li, M. Ibáñez, A. Cabot, ACS Nano 17 (2023) 8442–8452.","mla":"Xing, Congcong, et al. “Thermoelectric Performance of Surface-Engineered Cu1.5–XTe–Cu2Se Nanocomposites.” ACS Nano, vol. 17, no. 9, American Chemical Society, 2023, pp. 8442–52, doi:10.1021/acsnano.3c00495.","chicago":"Xing, Congcong, Yu Zhang, Ke Xiao, Xu Han, Yu Liu, Bingfei Nan, Maria Garcia Ramon, et al. “Thermoelectric Performance of Surface-Engineered Cu1.5–XTe–Cu2Se Nanocomposites.” ACS Nano. American Chemical Society, 2023. https://doi.org/10.1021/acsnano.3c00495."},"day":"09","article_processing_charge":"No","scopus_import":"1","date_created":"2023-05-07T22:01:04Z","date_updated":"2023-10-04T11:29:22Z","volume":17,"author":[{"first_name":"Congcong","last_name":"Xing","full_name":"Xing, Congcong"},{"full_name":"Zhang, Yu","last_name":"Zhang","first_name":"Yu"},{"last_name":"Xiao","first_name":"Ke","full_name":"Xiao, Ke"},{"full_name":"Han, Xu","first_name":"Xu","last_name":"Han"},{"full_name":"Liu, Yu","first_name":"Yu","last_name":"Liu","id":"2A70014E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-7313-6740"},{"full_name":"Nan, Bingfei","last_name":"Nan","first_name":"Bingfei"},{"id":"1ffff7cd-ed76-11ed-8d5f-be5e7c364eb9","last_name":"Ramon","first_name":"Maria Garcia","full_name":"Ramon, Maria Garcia"},{"full_name":"Lim, Khak Ho","last_name":"Lim","first_name":"Khak Ho"},{"last_name":"Li","first_name":"Junshan","full_name":"Li, Junshan"},{"full_name":"Arbiol, Jordi","first_name":"Jordi","last_name":"Arbiol"},{"full_name":"Poudel, Bed","first_name":"Bed","last_name":"Poudel"},{"first_name":"Amin","last_name":"Nozariasbmarz","full_name":"Nozariasbmarz, Amin"},{"last_name":"Li","first_name":"Wenjie","full_name":"Li, Wenjie"},{"full_name":"Ibáñez, Maria","orcid":"0000-0001-5013-2843","id":"43C61214-F248-11E8-B48F-1D18A9856A87","last_name":"Ibáñez","first_name":"Maria"},{"last_name":"Cabot","first_name":"Andreu","full_name":"Cabot, Andreu"}],"publication_status":"published","publisher":"American Chemical Society","department":[{"_id":"MaIb"}],"year":"2023","acknowledgement":"The authors acknowledge support from the projects ENE2016-77798-C4-3-R and NANOGEN (PID2020-116093RB-C43) funded by MCIN/AEI/10.13039/501100011033/and by “ERDF A way of making Europe”, and by the “European Union”. K.X. and B.N. thank the China Scholarship Council (CSC) for scholarship support. The authors acknowledge funding from Generalitat de Catalunya 2017 SGR 327 and 2017 SGR 1246. ICN2 is supported by the Severo Ochoa program from the Spanish MCIN/AEI (Grant No.: CEX2021-001214-S). IREC and ICN2 are funded by the CERCA Programme/Generalitat de Catalunya. J.L. acknowledges support from the Natural Science Foundation of Sichuan province (2022NSFSC1229). Part of the present work was performed in the frameworks of Universitat de Barcelona Nanoscience Ph.D. program and Universitat Autònoma de Barcelona Materials Science Ph.D. program. Y.L. acknowledges funding from the National Natural Science Foundation of China (Grant No. 22209034) and the Innovation and Entrepreneurship Project of Overseas Returnees in Anhui Province (Grants No. 2022LCX002). K.H.L. acknowledges the financial support of the National Natural Science Foundation of China (Grant No. 22208293).","pmid":1,"language":[{"iso":"eng"}],"doi":"10.1021/acsnano.3c00495","quality_controlled":"1","isi":1,"external_id":{"pmid":["37071412"],"isi":["000976063200001"]},"month":"05","publication_identifier":{"eissn":["1936-086X"],"issn":["1936-0851"]}},{"publication_identifier":{"issn":["1363-755X"],"eissn":["1467-7687"]},"month":"09","doi":"10.1111/desc.13395","language":[{"iso":"eng"}],"external_id":{"pmid":["37101383"]},"quality_controlled":"1","article_number":"e13395","author":[{"full_name":"Wagner, Bernhard","first_name":"Bernhard","last_name":"Wagner"},{"full_name":"Šlipogor, Vedrana","last_name":"Šlipogor","first_name":"Vedrana"},{"id":"403169A4-080F-11EA-9993-BF3F3DDC885E","orcid":"0000-0001-7425-2372","first_name":"Jinook","last_name":"Oh","full_name":"Oh, Jinook"},{"full_name":"Varga, Marion","last_name":"Varga","first_name":"Marion"},{"first_name":"Marisa","last_name":"Hoeschele","full_name":"Hoeschele, Marisa"}],"volume":26,"date_created":"2023-05-14T22:01:00Z","date_updated":"2023-10-04T11:37:33Z","pmid":1,"year":"2023","acknowledgement":"We thank Prof. Dr. Thomas Bugnyar for supporting the study and financing the marmoset laboratory, and Alexandra Bohmann and the animal keeping team for their care. Vedrana Šlipogor was funded by University of South Bohemia postdoctoral fellowship.","department":[{"_id":"SyCr"}],"publisher":"Wiley","publication_status":"published","article_processing_charge":"No","day":"01","scopus_import":"1","date_published":"2023-09-01T00:00:00Z","citation":{"mla":"Wagner, Bernhard, et al. “A Comparison between Common Marmosets (Callithrix Jacchus) and Human Infants Sheds Light on Traits Proposed to Be at the Root of Human Octave Equivalence.” Developmental Science, vol. 26, no. 5, e13395, Wiley, 2023, doi:10.1111/desc.13395.","short":"B. Wagner, V. Šlipogor, J. Oh, M. Varga, M. Hoeschele, Developmental Science 26 (2023).","chicago":"Wagner, Bernhard, Vedrana Šlipogor, Jinook Oh, Marion Varga, and Marisa Hoeschele. “A Comparison between Common Marmosets (Callithrix Jacchus) and Human Infants Sheds Light on Traits Proposed to Be at the Root of Human Octave Equivalence.” Developmental Science. Wiley, 2023. https://doi.org/10.1111/desc.13395.","ama":"Wagner B, Šlipogor V, Oh J, Varga M, Hoeschele M. A comparison between common marmosets (Callithrix jacchus) and human infants sheds light on traits proposed to be at the root of human octave equivalence. Developmental Science. 2023;26(5). doi:10.1111/desc.13395","ista":"Wagner B, Šlipogor V, Oh J, Varga M, Hoeschele M. 2023. A comparison between common marmosets (Callithrix jacchus) and human infants sheds light on traits proposed to be at the root of human octave equivalence. Developmental Science. 26(5), e13395.","ieee":"B. Wagner, V. Šlipogor, J. Oh, M. Varga, and M. Hoeschele, “A comparison between common marmosets (Callithrix jacchus) and human infants sheds light on traits proposed to be at the root of human octave equivalence,” Developmental Science, vol. 26, no. 5. Wiley, 2023.","apa":"Wagner, B., Šlipogor, V., Oh, J., Varga, M., & Hoeschele, M. (2023). A comparison between common marmosets (Callithrix jacchus) and human infants sheds light on traits proposed to be at the root of human octave equivalence. Developmental Science. Wiley. https://doi.org/10.1111/desc.13395"},"publication":"Developmental Science","article_type":"original","issue":"5","abstract":[{"lang":"eng","text":"Two notes separated by a doubling in frequency sound similar to humans. This “octave equivalence” is critical to perception and production of music and speech and occurs early in human development. Because it also occurs cross-culturally, a biological basis of octave equivalence has been hypothesized. Members of our team previousy suggested four human traits are at the root of this phenomenon: (1) vocal learning, (2) clear octave information in vocal harmonics, (3) differing vocal ranges, and (4) vocalizing together. Using cross-species studies, we can test how relevant these respective traits are, while controlling for enculturation effects and addressing questions of phylogeny. Common marmosets possess forms of three of the four traits, lacking differing vocal ranges. We tested 11 common marmosets by adapting an established head-turning paradigm, creating a parallel test to an important infant study. Unlike human infants, marmosets responded similarly to tones shifted by an octave or other intervals. Because previous studies with the same head-turning paradigm produced differential results to discernable acoustic stimuli in common marmosets, our results suggest that marmosets do not perceive octave equivalence. Our work suggests differing vocal ranges between adults and children and men and women and the way they are used in singing together may be critical to the development of octave equivalence."}],"type":"journal_article","oa_version":"None","_id":"12961","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","intvolume":" 26","title":"A comparison between common marmosets (Callithrix jacchus) and human infants sheds light on traits proposed to be at the root of human octave equivalence","status":"public"},{"type":"journal_article","abstract":[{"text":"We consider billiards obtained by removing from the plane finitely many strictly convex analytic obstacles satisfying the non-eclipse condition. The restriction of the dynamics to the set of non-escaping orbits is conjugated to a subshift, which provides a natural labeling of periodic orbits. We show that under suitable symmetry and genericity assumptions, the Marked Length Spectrum determines the geometry of the billiard table.","lang":"eng"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"12877","intvolume":" 233","title":"Marked Length Spectral determination of analytic chaotic billiards with axial symmetries","status":"public","oa_version":"Preprint","scopus_import":"1","article_processing_charge":"No","day":"01","citation":{"ama":"De Simoi J, Kaloshin V, Leguil M. Marked Length Spectral determination of analytic chaotic billiards with axial symmetries. Inventiones Mathematicae. 2023;233:829-901. doi:10.1007/s00222-023-01191-8","ista":"De Simoi J, Kaloshin V, Leguil M. 2023. Marked Length Spectral determination of analytic chaotic billiards with axial symmetries. Inventiones Mathematicae. 233, 829–901.","ieee":"J. De Simoi, V. Kaloshin, and M. Leguil, “Marked Length Spectral determination of analytic chaotic billiards with axial symmetries,” Inventiones Mathematicae, vol. 233. Springer Nature, pp. 829–901, 2023.","apa":"De Simoi, J., Kaloshin, V., & Leguil, M. (2023). Marked Length Spectral determination of analytic chaotic billiards with axial symmetries. Inventiones Mathematicae. Springer Nature. https://doi.org/10.1007/s00222-023-01191-8","mla":"De Simoi, Jacopo, et al. “Marked Length Spectral Determination of Analytic Chaotic Billiards with Axial Symmetries.” Inventiones Mathematicae, vol. 233, Springer Nature, 2023, pp. 829–901, doi:10.1007/s00222-023-01191-8.","short":"J. De Simoi, V. Kaloshin, M. Leguil, Inventiones Mathematicae 233 (2023) 829–901.","chicago":"De Simoi, Jacopo, Vadim Kaloshin, and Martin Leguil. “Marked Length Spectral Determination of Analytic Chaotic Billiards with Axial Symmetries.” Inventiones Mathematicae. Springer Nature, 2023. https://doi.org/10.1007/s00222-023-01191-8."},"publication":"Inventiones Mathematicae","page":"829-901","article_type":"original","date_published":"2023-08-01T00:00:00Z","ec_funded":1,"acknowledgement":"J.D.S. and M.L. have been partially supported by the NSERC Discovery grant, reference number 502617-2017. M.L. was also supported by the ERC project 692925 NUHGD of Sylvain Crovisier, by the ANR AAPG 2021 PRC CoSyDy: Conformally symplectic dynamics, beyond symplectic dynamics (ANR-CE40-0014), and by the ANR JCJC PADAWAN: Parabolic dynamics, bifurcations and wandering domains (ANR-21-CE40-0012). V.K. acknowledges partial support of the NSF grant DMS-1402164 and ERC Grant # 885707.","year":"2023","publisher":"Springer Nature","department":[{"_id":"VaKa"}],"publication_status":"published","author":[{"full_name":"De Simoi, Jacopo","first_name":"Jacopo","last_name":"De Simoi"},{"last_name":"Kaloshin","first_name":"Vadim","orcid":"0000-0002-6051-2628","id":"FE553552-CDE8-11E9-B324-C0EBE5697425","full_name":"Kaloshin, Vadim"},{"full_name":"Leguil, Martin","first_name":"Martin","last_name":"Leguil"}],"volume":233,"date_created":"2023-04-30T22:01:05Z","date_updated":"2023-10-04T11:25:37Z","publication_identifier":{"issn":["0020-9910"],"eissn":["1432-1297"]},"month":"08","external_id":{"isi":["000978887600001"],"arxiv":["1905.00890"]},"main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.1905.00890"}],"oa":1,"project":[{"call_identifier":"H2020","name":"Spectral rigidity and integrability for billiards and geodesic flows","grant_number":"885707","_id":"9B8B92DE-BA93-11EA-9121-9846C619BF3A"}],"isi":1,"quality_controlled":"1","doi":"10.1007/s00222-023-01191-8","language":[{"iso":"eng"}]},{"month":"04","publication_identifier":{"issn":["1097-6256"],"eissn":["1546-1726"]},"doi":"10.1038/s41593-023-01280-0","acknowledged_ssus":[{"_id":"ScienComp"},{"_id":"PreCl"},{"_id":"LifeSc"},{"_id":"Bio"}],"language":[{"iso":"eng"}],"oa":1,"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"isi":["000955258300002"],"pmid":["36959418"]},"quality_controlled":"1","isi":1,"project":[{"name":"International IST Doctoral Program","call_identifier":"H2020","_id":"2564DBCA-B435-11E9-9278-68D0E5697425","grant_number":"665385"},{"name":"Efficient coding with biophysical realism","_id":"626c45b5-2b32-11ec-9570-e509828c1ba6","grant_number":"P34015"},{"_id":"2634E9D2-B435-11E9-9278-68D0E5697425","grant_number":"756502","name":"Circuits of Visual Attention","call_identifier":"H2020"},{"grant_number":"LT000256","_id":"266D407A-B435-11E9-9278-68D0E5697425","name":"Neuronal networks of salience and spatial detection in the murine superior colliculus"},{"grant_number":"ALTF 1098-2017","_id":"264FEA02-B435-11E9-9278-68D0E5697425","name":"Connecting sensory with motor processing in the superior colliculus"}],"file_date_updated":"2023-10-04T11:40:51Z","ec_funded":1,"author":[{"first_name":"Divyansh","last_name":"Gupta","id":"2A485EBE-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-7400-6665","full_name":"Gupta, Divyansh"},{"full_name":"Mlynarski, Wiktor F","first_name":"Wiktor F","last_name":"Mlynarski","id":"358A453A-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Sumser, Anton L","last_name":"Sumser","first_name":"Anton L","orcid":"0000-0002-4792-1881","id":"3320A096-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Olga","last_name":"Symonova","id":"3C0C7BC6-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-2012-9947","full_name":"Symonova, Olga"},{"orcid":"0000-0002-6198-2939","id":"f7f724c3-9d6f-11ed-9f44-e5c5f3a5bee2","last_name":"Svaton","first_name":"Jan","full_name":"Svaton, Jan"},{"full_name":"Jösch, Maximilian A","orcid":"0000-0002-3937-1330","id":"2BD278E6-F248-11E8-B48F-1D18A9856A87","last_name":"Jösch","first_name":"Maximilian A"}],"related_material":{"record":[{"id":"12370","relation":"research_data","status":"public"}]},"date_updated":"2023-10-04T11:41:05Z","date_created":"2023-01-23T14:14:19Z","volume":26,"acknowledgement":"We thank Hiroki Asari for sharing the dataset of naturalistic images, Anton Sumser for sharing visual stimulus code, Yoav Ben Simon for initial explorative work with the generation of AAVs, and Tomas Vega-Zuñiga for help with immunostainings. We also thank Gasper Tkacik and members of the Neuroethology group for their comments on the manuscript. This research was supported by the Scientific Service Units of IST Austria through resources provided by Scientific Computing, the Preclinical Facility, the Lab Support Facility, and the Imaging and Optics Facility. This work was supported by European Union Horizon 2020 Marie Skłodowska-Curie grant 665385 (DG), Austrian Science Fund (FWF) stand-alone grant P 34015 (WM), Human Frontiers Science Program LT000256/2018-L (AS), EMBO ALTF 1098-2017 (AS) and the European Research Council Starting Grant 756502 (MJ).","year":"2023","pmid":1,"publication_status":"published","publisher":"Springer Nature","department":[{"_id":"GradSch"},{"_id":"MaJö"}],"day":"01","article_processing_charge":"Yes (in subscription journal)","has_accepted_license":"1","scopus_import":"1","date_published":"2023-04-01T00:00:00Z","publication":"Nature Neuroscience","citation":{"chicago":"Gupta, Divyansh, Wiktor F Mlynarski, Anton L Sumser, Olga Symonova, Jan Svaton, and Maximilian A Jösch. “Panoramic Visual Statistics Shape Retina-Wide Organization of Receptive Fields.” Nature Neuroscience. Springer Nature, 2023. https://doi.org/10.1038/s41593-023-01280-0.","short":"D. Gupta, W.F. Mlynarski, A.L. Sumser, O. Symonova, J. Svaton, M.A. Jösch, Nature Neuroscience 26 (2023) 606–614.","mla":"Gupta, Divyansh, et al. “Panoramic Visual Statistics Shape Retina-Wide Organization of Receptive Fields.” Nature Neuroscience, vol. 26, Springer Nature, 2023, pp. 606–14, doi:10.1038/s41593-023-01280-0.","apa":"Gupta, D., Mlynarski, W. F., Sumser, A. L., Symonova, O., Svaton, J., & Jösch, M. A. (2023). Panoramic visual statistics shape retina-wide organization of receptive fields. Nature Neuroscience. Springer Nature. https://doi.org/10.1038/s41593-023-01280-0","ieee":"D. Gupta, W. F. Mlynarski, A. L. Sumser, O. Symonova, J. Svaton, and M. A. Jösch, “Panoramic visual statistics shape retina-wide organization of receptive fields,” Nature Neuroscience, vol. 26. Springer Nature, pp. 606–614, 2023.","ista":"Gupta D, Mlynarski WF, Sumser AL, Symonova O, Svaton J, Jösch MA. 2023. Panoramic visual statistics shape retina-wide organization of receptive fields. Nature Neuroscience. 26, 606–614.","ama":"Gupta D, Mlynarski WF, Sumser AL, Symonova O, Svaton J, Jösch MA. Panoramic visual statistics shape retina-wide organization of receptive fields. Nature Neuroscience. 2023;26:606-614. doi:10.1038/s41593-023-01280-0"},"article_type":"original","page":"606-614","abstract":[{"lang":"eng","text":"Statistics of natural scenes are not uniform - their structure varies dramatically from ground to sky. It remains unknown whether these non-uniformities are reflected in the large-scale organization of the early visual system and what benefits such adaptations would confer. Here, by relying on the efficient coding hypothesis, we predict that changes in the structure of receptive fields across visual space increase the efficiency of sensory coding. We show experimentally that, in agreement with our predictions, receptive fields of retinal ganglion cells change their shape along the dorsoventral retinal axis, with a marked surround asymmetry at the visual horizon. Our work demonstrates that, according to principles of efficient coding, the panoramic structure of natural scenes is exploited by the retina across space and cell-types."}],"type":"journal_article","file":[{"relation":"main_file","file_id":"14395","checksum":"a33d91e398e548f34003170e10988368","success":1,"date_updated":"2023-10-04T11:40:51Z","date_created":"2023-10-04T11:40:51Z","access_level":"open_access","file_name":"2023_NatureNeuroscience_Gupta.pdf","file_size":6144866,"content_type":"application/pdf","creator":"dernst"}],"oa_version":"Published Version","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"12349","title":"Panoramic visual statistics shape retina-wide organization of receptive fields","status":"public","ddc":["570"],"intvolume":" 26"},{"file_date_updated":"2023-01-26T10:51:34Z","abstract":[{"lang":"eng","text":"Statistics of natural scenes are not uniform - their structure varies dramatically from ground to sky. 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ICN2 is supported by the Severo Ochoa program from Spanish MCIN / AEI (Grant No.: CEX2021-001214-S). IREC and ICN2 are funded by the CERCA Programme from the Generalitat de Catalunya. Part of the present work has been performed in the frameworks of the Universitat de Barcelona Nanoscience PhD program. ICN2 acknowledges funding from Generalitat de Catalunya 2021SGR00457. This study was supported by MCIN with funding from European Union NextGenerationEU (PRTR-C17.I1) and Generalitat de Catalunya. The authors thank the support from the project NANOGEN (PID2020-116093RB-C43), funded by MCIN/ AEI/10.13039/501100011033/ and by “ERDF A way of making Europe”, by the European Union. The project on which these results are based has received funding from the European Union's Horizon 2020 research and innovation programme under Marie Skłodowska-Curie grant agreement No. 801342 (Tecniospring INDUSTRY) and the Government of Catalonia's Agency for Business Competitiveness (ACCIÓ). J. Li is grateful for the project supported by the Natural Science Foundation of Sichuan (2022NSFSC1229). M.I. acknowledges funding by ISTA and the Werner Siemens Foundation.","year":"2023","day":"01","article_processing_charge":"No","scopus_import":"1","date_published":"2023-05-01T00:00:00Z","article_type":"original","publication":"Journal of Electroanalytical Chemistry","citation":{"ista":"Montaña-Mora G, Qi X, Wang X, Chacón-Borrero J, Martinez-Alanis PR, Yu X, Li J, Xue Q, Arbiol J, Ibáñez M, Cabot A. 2023. Phosphorous incorporation into palladium tin nanoparticles for the electrocatalytic formate oxidation reaction. Journal of Electroanalytical Chemistry. 936, 117369.","apa":"Montaña-Mora, G., Qi, X., Wang, X., Chacón-Borrero, J., Martinez-Alanis, P. R., Yu, X., … Cabot, A. (2023). Phosphorous incorporation into palladium tin nanoparticles for the electrocatalytic formate oxidation reaction. Journal of Electroanalytical Chemistry. Elsevier. https://doi.org/10.1016/j.jelechem.2023.117369","ieee":"G. Montaña-Mora et al., “Phosphorous incorporation into palladium tin nanoparticles for the electrocatalytic formate oxidation reaction,” Journal of Electroanalytical Chemistry, vol. 936. Elsevier, 2023.","ama":"Montaña-Mora G, Qi X, Wang X, et al. Phosphorous incorporation into palladium tin nanoparticles for the electrocatalytic formate oxidation reaction. Journal of Electroanalytical Chemistry. 2023;936. doi:10.1016/j.jelechem.2023.117369","chicago":"Montaña-Mora, Guillem, Xueqiang Qi, Xiang Wang, Jesus Chacón-Borrero, Paulina R. Martinez-Alanis, Xiaoting Yu, Junshan Li, et al. “Phosphorous Incorporation into Palladium Tin Nanoparticles for the Electrocatalytic Formate Oxidation Reaction.” Journal of Electroanalytical Chemistry. Elsevier, 2023. https://doi.org/10.1016/j.jelechem.2023.117369.","mla":"Montaña-Mora, Guillem, et al. “Phosphorous Incorporation into Palladium Tin Nanoparticles for the Electrocatalytic Formate Oxidation Reaction.” Journal of Electroanalytical Chemistry, vol. 936, 117369, Elsevier, 2023, doi:10.1016/j.jelechem.2023.117369.","short":"G. Montaña-Mora, X. Qi, X. Wang, J. Chacón-Borrero, P.R. Martinez-Alanis, X. Yu, J. Li, Q. Xue, J. Arbiol, M. Ibáñez, A. Cabot, Journal of Electroanalytical Chemistry 936 (2023)."},"abstract":[{"lang":"eng","text":"The deployment of direct formate fuel cells (DFFCs) relies on the development of active and stable catalysts for the formate oxidation reaction (FOR). Palladium, providing effective full oxidation of formate to CO2, has been widely used as FOR catalyst, but it suffers from low stability, moderate activity, and high cost. Herein, we detail a colloidal synthesis route for the incorporation of P on Pd2Sn nanoparticles. These nanoparticles are dispersed on carbon black and the obtained composite is used as electrocatalytic material for the FOR. The Pd2Sn0.8P-based electrodes present outstanding catalytic activities with record mass current densities up to 10.0 A mgPd-1, well above those of Pd1.6Sn/C reference electrode. These high current densities are further enhanced by increasing the temperature from 25 °C to 40 °C. The Pd2Sn0.8P electrode also allows for slowing down the rapid current decay that generally happens during operation and can be rapidly re-activated through potential cycling. The excellent catalytic performance obtained is rationalized using density functional theory (DFT) calculations."}],"type":"journal_article","oa_version":"None","status":"public","title":"Phosphorous incorporation into palladium tin nanoparticles for the electrocatalytic formate oxidation reaction","intvolume":" 936","_id":"12829","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"abstract":[{"lang":"eng","text":"We study a new discretization of the Gaussian curvature for polyhedral surfaces. This discrete Gaussian curvature is defined on each conical singularity of a polyhedral surface as the quotient of the angle defect and the area of the Voronoi cell corresponding to the singularity. We divide polyhedral surfaces into discrete conformal classes using a generalization of discrete conformal equivalence pioneered by Feng Luo. We subsequently show that, in every discrete conformal class, there exists a polyhedral surface with constant discrete Gaussian curvature. 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We show both generalizations of celebrated Erdös--Ko--Rado theorem and Hilton--Milner theorem to the setting of exterior algebra in the simplest non-trivial case of two-forms.\r\n","lang":"eng"}],"type":"dissertation","alternative_title":["ISTA Master's Thesis"],"file":[{"file_name":"Exterior Algebra and Combinatorics.zip","access_level":"closed","creator":"skoese","content_type":"application/x-zip-compressed","file_size":28684,"file_id":"13333","relation":"source_file","date_updated":"2023-07-31T10:16:32Z","date_created":"2023-07-31T10:16:32Z","checksum":"96ee518d796d02af71395622c45de03c"},{"relation":"main_file","file_id":"13480","checksum":"f610f4713f88bc477de576aaa46b114e","success":1,"date_updated":"2023-08-03T15:28:55Z","date_created":"2023-08-03T15:28:55Z","access_level":"open_access","file_name":"thesis-pdfa.pdf","content_type":"application/pdf","file_size":4953418,"creator":"skoese"}],"oa_version":"Published Version","_id":"13331","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","ddc":["510","516"],"title":"Exterior algebra and combinatorics","status":"public","article_processing_charge":"No","has_accepted_license":"1","day":"31","date_published":"2023-07-31T00:00:00Z","citation":{"ista":"Köse S. 2023. Exterior algebra and combinatorics. Institute of Science and Technology Austria.","apa":"Köse, S. (2023). Exterior algebra and combinatorics. Institute of Science and Technology Austria. https://doi.org/10.15479/at:ista:13331","ieee":"S. Köse, “Exterior algebra and combinatorics,” Institute of Science and Technology Austria, 2023.","ama":"Köse S. Exterior algebra and combinatorics. 2023. doi:10.15479/at:ista:13331","chicago":"Köse, Seyda. “Exterior Algebra and Combinatorics.” Institute of Science and Technology Austria, 2023. https://doi.org/10.15479/at:ista:13331.","mla":"Köse, Seyda. Exterior Algebra and Combinatorics. Institute of Science and Technology Austria, 2023, doi:10.15479/at:ista:13331.","short":"S. Köse, Exterior Algebra and Combinatorics, Institute of Science and Technology Austria, 2023."},"page":"26"},{"doi":"10.1111/1365-2435.14310","language":[{"iso":"eng"}],"external_id":{"isi":["000948940500001"]},"isi":1,"quality_controlled":"1","month":"04","publication_identifier":{"issn":["0269-8463"],"eissn":["1365-2435"]},"author":[{"last_name":"Stockmaier","first_name":"Sebastian","full_name":"Stockmaier, Sebastian"},{"full_name":"Ulrich, Yuko","last_name":"Ulrich","first_name":"Yuko"},{"full_name":"Albery, Gregory F.","first_name":"Gregory F.","last_name":"Albery"},{"full_name":"Cremer, Sylvia","first_name":"Sylvia","last_name":"Cremer","id":"2F64EC8C-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2193-3868"},{"full_name":"Lopes, Patricia C.","first_name":"Patricia C.","last_name":"Lopes"}],"date_created":"2023-03-26T22:01:09Z","date_updated":"2023-10-04T11:50:15Z","volume":37,"year":"2023","publication_status":"published","department":[{"_id":"SyCr"}],"publisher":"British Ecological Society","date_published":"2023-04-01T00:00:00Z","publication":"Functional Ecology","citation":{"ista":"Stockmaier S, Ulrich Y, Albery GF, Cremer S, Lopes PC. 2023. Behavioural defences against parasites across host social structures. Functional Ecology. 37(4), 809–820.","ieee":"S. Stockmaier, Y. Ulrich, G. F. Albery, S. Cremer, and P. C. Lopes, “Behavioural defences against parasites across host social structures,” Functional Ecology, vol. 37, no. 4. British Ecological Society, pp. 809–820, 2023.","apa":"Stockmaier, S., Ulrich, Y., Albery, G. F., Cremer, S., & Lopes, P. C. (2023). Behavioural defences against parasites across host social structures. Functional Ecology. British Ecological Society. https://doi.org/10.1111/1365-2435.14310","ama":"Stockmaier S, Ulrich Y, Albery GF, Cremer S, Lopes PC. Behavioural defences against parasites across host social structures. Functional Ecology. 2023;37(4):809-820. doi:10.1111/1365-2435.14310","chicago":"Stockmaier, Sebastian, Yuko Ulrich, Gregory F. Albery, Sylvia Cremer, and Patricia C. Lopes. “Behavioural Defences against Parasites across Host Social Structures.” Functional Ecology. British Ecological Society, 2023. https://doi.org/10.1111/1365-2435.14310.","mla":"Stockmaier, Sebastian, et al. “Behavioural Defences against Parasites across Host Social Structures.” Functional Ecology, vol. 37, no. 4, British Ecological Society, 2023, pp. 809–20, doi:10.1111/1365-2435.14310.","short":"S. Stockmaier, Y. Ulrich, G.F. Albery, S. Cremer, P.C. Lopes, Functional Ecology 37 (2023) 809–820."},"article_type":"review","page":"809-820","day":"01","article_processing_charge":"No","scopus_import":"1","oa_version":"None","_id":"12765","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","title":"Behavioural defences against parasites across host social structures","intvolume":" 37","abstract":[{"text":"Animals exhibit a variety of behavioural defences against socially transmitted parasites. These defences evolved to increase host fitness by avoiding, resisting or tolerating infection.\r\nBecause they can occur in both infected individuals and their uninfected social partners, these defences often have important consequences for the social group.\r\nHere, we discuss the evolution and ecology of anti-parasite behavioural defences across a taxonomically wide social spectrum, considering colonial groups, stable groups, transitional groups and solitary animals.\r\nWe discuss avoidance, resistance and tolerance behaviours across these social group structures, identifying how social complexity, group composition and interdependent social relationships may contribute to the expression and evolution of behavioural strategies.\r\nFinally, we outline avenues for further investigation such as approaches to quantify group-level responses, and the connection of the physiological and behavioural response to parasites in different social contexts.","lang":"eng"}],"issue":"4","type":"journal_article"},{"related_material":{"record":[{"status":"public","relation":"dissertation_contains","id":"13331"}]},"author":[{"first_name":"Grigory","last_name":"Ivanov","id":"87744F66-5C6F-11EA-AFE0-D16B3DDC885E","full_name":"Ivanov, Grigory"},{"full_name":"Köse, Seyda","last_name":"Köse","first_name":"Seyda","id":"8ba3170d-dc85-11ea-9058-c4251c96a6eb"}],"volume":346,"date_updated":"2023-10-04T11:54:57Z","date_created":"2023-02-26T23:01:00Z","year":"2023","department":[{"_id":"UlWa"},{"_id":"GradSch"}],"publisher":"Elsevier","publication_status":"published","article_number":"113363","doi":"10.1016/j.disc.2023.113363","language":[{"iso":"eng"}],"oa":1,"external_id":{"arxiv":["2201.10892"]},"main_file_link":[{"open_access":"1","url":" https://doi.org/10.48550/arXiv.2201.10892"}],"quality_controlled":"1","publication_identifier":{"issn":["0012-365X"]},"month":"06","oa_version":"Preprint","_id":"12680","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","intvolume":" 346","title":"Erdős-Ko-Rado and Hilton-Milner theorems for two-forms","status":"public","issue":"6","abstract":[{"text":"The celebrated Erdős–Ko–Rado theorem about the maximal size of an intersecting family of r-element subsets of was extended to the setting of exterior algebra in [5, Theorem 2.3] and in [6, Theorem 1.4]. However, the equality case has not been settled yet. In this short note, we show that the extension of the Erdős–Ko–Rado theorem and the characterization of the equality case therein, as well as those of the Hilton–Milner theorem to the setting of exterior algebra in the simplest non-trivial case of two-forms follow from a folklore puzzle about possible arrangements of an intersecting family of lines.","lang":"eng"}],"type":"journal_article","date_published":"2023-06-01T00:00:00Z","citation":{"ama":"Ivanov G, Köse S. Erdős-Ko-Rado and Hilton-Milner theorems for two-forms. Discrete Mathematics. 2023;346(6). doi:10.1016/j.disc.2023.113363","apa":"Ivanov, G., & Köse, S. (2023). Erdős-Ko-Rado and Hilton-Milner theorems for two-forms. Discrete Mathematics. Elsevier. https://doi.org/10.1016/j.disc.2023.113363","ieee":"G. Ivanov and S. Köse, “Erdős-Ko-Rado and Hilton-Milner theorems for two-forms,” Discrete Mathematics, vol. 346, no. 6. Elsevier, 2023.","ista":"Ivanov G, Köse S. 2023. Erdős-Ko-Rado and Hilton-Milner theorems for two-forms. Discrete Mathematics. 346(6), 113363.","short":"G. Ivanov, S. Köse, Discrete Mathematics 346 (2023).","mla":"Ivanov, Grigory, and Seyda Köse. “Erdős-Ko-Rado and Hilton-Milner Theorems for Two-Forms.” Discrete Mathematics, vol. 346, no. 6, 113363, Elsevier, 2023, doi:10.1016/j.disc.2023.113363.","chicago":"Ivanov, Grigory, and Seyda Köse. “Erdős-Ko-Rado and Hilton-Milner Theorems for Two-Forms.” Discrete Mathematics. Elsevier, 2023. https://doi.org/10.1016/j.disc.2023.113363."},"publication":"Discrete Mathematics","article_type":"letter_note","article_processing_charge":"No","day":"01","scopus_import":"1"},{"type":"journal_article","abstract":[{"lang":"eng","text":"In the physics literature the spectral form factor (SFF), the squared Fourier transform of the empirical eigenvalue density, is the most common tool to test universality for disordered quantum systems, yet previous mathematical results have been restricted only to two exactly solvable models (Forrester in J Stat Phys 183:33, 2021. https://doi.org/10.1007/s10955-021-02767-5, Commun Math Phys 387:215–235, 2021. https://doi.org/10.1007/s00220-021-04193-w). We rigorously prove the physics prediction on SFF up to an intermediate time scale for a large class of random matrices using a robust method, the multi-resolvent local laws. Beyond Wigner matrices we also consider the monoparametric ensemble and prove that universality of SFF can already be triggered by a single random parameter, supplementing the recently proven Wigner–Dyson universality (Cipolloni et al. in Probab Theory Relat Fields, 2021. https://doi.org/10.1007/s00440-022-01156-7) to larger spectral scales. Remarkably, extensive numerics indicates that our formulas correctly predict the SFF in the entire slope-dip-ramp regime, as customarily called in physics."}],"intvolume":" 401","status":"public","title":"On the spectral form factor for random matrices","ddc":["510"],"_id":"12792","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Published Version","file":[{"date_updated":"2023-10-04T12:09:18Z","date_created":"2023-10-04T12:09:18Z","success":1,"checksum":"72057940f76654050ca84a221f21786c","file_id":"14397","relation":"main_file","creator":"dernst","content_type":"application/pdf","file_size":859967,"file_name":"2023_CommMathPhysics_Cipolloni.pdf","access_level":"open_access"}],"scopus_import":"1","has_accepted_license":"1","article_processing_charge":"Yes (via OA deal)","day":"01","page":"1665-1700","article_type":"original","citation":{"apa":"Cipolloni, G., Erdös, L., & Schröder, D. J. (2023). On the spectral form factor for random matrices. Communications in Mathematical Physics. Springer Nature. https://doi.org/10.1007/s00220-023-04692-y","ieee":"G. Cipolloni, L. Erdös, and D. J. Schröder, “On the spectral form factor for random matrices,” Communications in Mathematical Physics, vol. 401. Springer Nature, pp. 1665–1700, 2023.","ista":"Cipolloni G, Erdös L, Schröder DJ. 2023. On the spectral form factor for random matrices. Communications in Mathematical Physics. 401, 1665–1700.","ama":"Cipolloni G, Erdös L, Schröder DJ. On the spectral form factor for random matrices. Communications in Mathematical Physics. 2023;401:1665-1700. doi:10.1007/s00220-023-04692-y","chicago":"Cipolloni, Giorgio, László Erdös, and Dominik J Schröder. “On the Spectral Form Factor for Random Matrices.” Communications in Mathematical Physics. Springer Nature, 2023. https://doi.org/10.1007/s00220-023-04692-y.","short":"G. Cipolloni, L. Erdös, D.J. Schröder, Communications in Mathematical Physics 401 (2023) 1665–1700.","mla":"Cipolloni, Giorgio, et al. “On the Spectral Form Factor for Random Matrices.” Communications in Mathematical Physics, vol. 401, Springer Nature, 2023, pp. 1665–700, doi:10.1007/s00220-023-04692-y."},"publication":"Communications in Mathematical Physics","date_published":"2023-07-01T00:00:00Z","ec_funded":1,"file_date_updated":"2023-10-04T12:09:18Z","department":[{"_id":"LaEr"}],"publisher":"Springer Nature","publication_status":"published","acknowledgement":"We are grateful to the authors of [25] for sharing with us their insights and preliminary numerical results. We are especially thankful to Stephen Shenker for very valuable advice over several email communications. Helpful comments on the manuscript from Peter Forrester and from the anonymous referees are also acknowledged.\r\nOpen access funding provided by Institute of Science and Technology (IST Austria).\r\nLászló Erdős: Partially supported by ERC Advanced Grant \"RMTBeyond\" No. 101020331. Dominik Schröder: Supported by Dr. Max Rössler, the Walter Haefner Foundation and the ETH Zürich Foundation.","year":"2023","volume":401,"date_created":"2023-04-02T22:01:11Z","date_updated":"2023-10-04T12:10:31Z","author":[{"last_name":"Cipolloni","first_name":"Giorgio","orcid":"0000-0002-4901-7992","id":"42198EFA-F248-11E8-B48F-1D18A9856A87","full_name":"Cipolloni, Giorgio"},{"full_name":"Erdös, László","orcid":"0000-0001-5366-9603","id":"4DBD5372-F248-11E8-B48F-1D18A9856A87","last_name":"Erdös","first_name":"László"},{"id":"408ED176-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2904-1856","first_name":"Dominik J","last_name":"Schröder","full_name":"Schröder, Dominik J"}],"publication_identifier":{"issn":["0010-3616"],"eissn":["1432-0916"]},"month":"07","project":[{"grant_number":"101020331","_id":"62796744-2b32-11ec-9570-940b20777f1d","call_identifier":"H2020","name":"Random matrices beyond Wigner-Dyson-Mehta"}],"isi":1,"quality_controlled":"1","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"isi":["000957343500001"]},"oa":1,"language":[{"iso":"eng"}],"doi":"10.1007/s00220-023-04692-y"},{"related_material":{"record":[{"id":"9605","status":"public","relation":"earlier_version"}]},"author":[{"full_name":"Corbet, René","first_name":"René","last_name":"Corbet"},{"id":"36E4574A-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8030-9299","first_name":"Michael","last_name":"Kerber","full_name":"Kerber, Michael"},{"first_name":"Michael","last_name":"Lesnick","full_name":"Lesnick, Michael"},{"first_name":"Georg F","last_name":"Osang","id":"464B40D6-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8882-5116","full_name":"Osang, Georg F"}],"volume":70,"date_created":"2023-03-05T23:01:06Z","date_updated":"2023-10-04T12:03:40Z","year":"2023","acknowledgement":"We thank the anonymous reviewers for many helpful comments and suggestions, which led to substantial improvements of the paper. The first two authors were supported by the Austrian Science Fund (FWF) grant number P 29984-N35 and W1230. The first author was partly supported by an Austrian Marshall Plan Scholarship, and by the Brummer & Partners MathDataLab. A conference version of this paper was presented at the 37th International Symposium on Computational Geometry (SoCG 2021). Open access funding provided by the Royal Institute of Technology.","department":[{"_id":"HeEd"}],"publisher":"Springer Nature","publication_status":"published","file_date_updated":"2023-03-07T14:40:14Z","doi":"10.1007/s00454-022-00476-8","language":[{"iso":"eng"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"arxiv":["2103.07823"],"isi":["000936496800001"]},"oa":1,"isi":1,"quality_controlled":"1","publication_identifier":{"issn":["0179-5376"],"eissn":["1432-0444"]},"month":"09","file":[{"access_level":"open_access","file_name":"2023_DisCompGeo_Corbet.pdf","content_type":"application/pdf","file_size":1359323,"creator":"cchlebak","relation":"main_file","file_id":"12715","checksum":"71ce7e59f7ee4620acc704fecca620c2","success":1,"date_updated":"2023-03-07T14:40:14Z","date_created":"2023-03-07T14:40:14Z"}],"oa_version":"Published Version","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"12709","intvolume":" 70","title":"Computing the multicover bifiltration","ddc":["000"],"status":"public","abstract":[{"lang":"eng","text":"Given a finite set A ⊂ ℝ^d, let Cov_{r,k} denote the set of all points within distance r to at least k points of A. Allowing r and k to vary, we obtain a 2-parameter family of spaces that grow larger when r increases or k decreases, called the multicover bifiltration. Motivated by the problem of computing the homology of this bifiltration, we introduce two closely related combinatorial bifiltrations, one polyhedral and the other simplicial, which are both topologically equivalent to the multicover bifiltration and far smaller than a Čech-based model considered in prior work of Sheehy. Our polyhedral construction is a bifiltration of the rhomboid tiling of Edelsbrunner and Osang, and can be efficiently computed using a variant of an algorithm given by these authors as well. Using an implementation for dimension 2 and 3, we provide experimental results. Our simplicial construction is useful for understanding the polyhedral construction and proving its correctness."}],"type":"journal_article","date_published":"2023-09-01T00:00:00Z","citation":{"chicago":"Corbet, René, Michael Kerber, Michael Lesnick, and Georg F Osang. “Computing the Multicover Bifiltration.” Discrete and Computational Geometry. Springer Nature, 2023. https://doi.org/10.1007/s00454-022-00476-8.","short":"R. Corbet, M. Kerber, M. Lesnick, G.F. Osang, Discrete and Computational Geometry 70 (2023) 376–405.","mla":"Corbet, René, et al. “Computing the Multicover Bifiltration.” Discrete and Computational Geometry, vol. 70, Springer Nature, 2023, pp. 376–405, doi:10.1007/s00454-022-00476-8.","ieee":"R. Corbet, M. Kerber, M. Lesnick, and G. F. Osang, “Computing the multicover bifiltration,” Discrete and Computational Geometry, vol. 70. Springer Nature, pp. 376–405, 2023.","apa":"Corbet, R., Kerber, M., Lesnick, M., & Osang, G. F. (2023). Computing the multicover bifiltration. Discrete and Computational Geometry. Springer Nature. https://doi.org/10.1007/s00454-022-00476-8","ista":"Corbet R, Kerber M, Lesnick M, Osang GF. 2023. Computing the multicover bifiltration. Discrete and Computational Geometry. 70, 376–405.","ama":"Corbet R, Kerber M, Lesnick M, Osang GF. Computing the multicover bifiltration. Discrete and Computational Geometry. 2023;70:376-405. doi:10.1007/s00454-022-00476-8"},"publication":"Discrete and Computational Geometry","page":"376-405","article_type":"original","article_processing_charge":"Yes (via OA deal)","has_accepted_license":"1","day":"01","scopus_import":"1"},{"publication_identifier":{"eissn":["2367-1734"],"issn":["2367-1726"]},"month":"09","language":[{"iso":"eng"}],"doi":"10.1007/s41468-023-00116-x","project":[{"name":"ISTplus - Postdoctoral Fellowships","call_identifier":"H2020","grant_number":"754411","_id":"260C2330-B435-11E9-9278-68D0E5697425"},{"_id":"fc390959-9c52-11eb-aca3-afa58bd282b2","grant_number":"M03073","name":"Learning and triangulating manifolds via collapses"}],"quality_controlled":"1","oa":1,"main_file_link":[{"url":"https://inserm.hal.science/INRIA-SACLAY/hal-04083524v1","open_access":"1"}],"ec_funded":1,"volume":7,"date_created":"2023-03-26T22:01:08Z","date_updated":"2023-10-04T12:07:18Z","author":[{"full_name":"Boissonnat, Jean Daniel","first_name":"Jean Daniel","last_name":"Boissonnat"},{"full_name":"Wintraecken, Mathijs","orcid":"0000-0002-7472-2220","id":"307CFBC8-F248-11E8-B48F-1D18A9856A87","last_name":"Wintraecken","first_name":"Mathijs"}],"department":[{"_id":"HeEd"}],"publisher":"Springer Nature","publication_status":"published","acknowledgement":"We thank Eddie Aamari, David Cohen-Steiner, Isa Costantini, Fred Chazal, Ramsay Dyer, André Lieutier, and Alef Sterk for discussion and Pierre Pansu for encouragement. We further acknowledge the anonymous reviewers whose comments helped improve the exposition.\r\nThe research leading to these results has received funding from the European Research Council (ERC) under the European Union’s Seventh Framework Programme (FP/2007-2013) / ERC Grant Agreement No. 339025 GUDHI (Algorithmic Foundations of Geometry Understanding in Higher Dimensions). The first author is further supported by the French government, through the 3IA Côte d’Azur Investments in the Future project managed by the National Research Agency (ANR) with the reference number ANR-19-P3IA-0002. The second author is supported by the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 754411 and the Austrian science fund (FWF) M-3073.","year":"2023","article_processing_charge":"No","day":"01","scopus_import":"1","date_published":"2023-09-01T00:00:00Z","page":"619-641","article_type":"original","citation":{"mla":"Boissonnat, Jean Daniel, and Mathijs Wintraecken. “The Reach of Subsets of Manifolds.” Journal of Applied and Computational Topology, vol. 7, Springer Nature, 2023, pp. 619–41, doi:10.1007/s41468-023-00116-x.","short":"J.D. Boissonnat, M. Wintraecken, Journal of Applied and Computational Topology 7 (2023) 619–641.","chicago":"Boissonnat, Jean Daniel, and Mathijs Wintraecken. “The Reach of Subsets of Manifolds.” Journal of Applied and Computational Topology. Springer Nature, 2023. https://doi.org/10.1007/s41468-023-00116-x.","ama":"Boissonnat JD, Wintraecken M. The reach of subsets of manifolds. Journal of Applied and Computational Topology. 2023;7:619-641. doi:10.1007/s41468-023-00116-x","ista":"Boissonnat JD, Wintraecken M. 2023. The reach of subsets of manifolds. Journal of Applied and Computational Topology. 7, 619–641.","apa":"Boissonnat, J. D., & Wintraecken, M. (2023). The reach of subsets of manifolds. Journal of Applied and Computational Topology. Springer Nature. https://doi.org/10.1007/s41468-023-00116-x","ieee":"J. D. Boissonnat and M. Wintraecken, “The reach of subsets of manifolds,” Journal of Applied and Computational Topology, vol. 7. Springer Nature, pp. 619–641, 2023."},"publication":"Journal of Applied and Computational Topology","abstract":[{"text":"Kleinjohann (Archiv der Mathematik 35(1):574–582, 1980; Mathematische Zeitschrift 176(3), 327–344, 1981) and Bangert (Archiv der Mathematik 38(1):54–57, 1982) extended the reach rch(S) from subsets S of Euclidean space to the reach rchM(S) of subsets S of Riemannian manifolds M, where M is smooth (we’ll assume at least C3). Bangert showed that sets of positive reach in Euclidean space and Riemannian manifolds are very similar. In this paper we introduce a slight variant of Kleinjohann’s and Bangert’s extension and quantify the similarity between sets of positive reach in Euclidean space and Riemannian manifolds in a new way: Given p∈M and q∈S, we bound the local feature size (a local version of the reach) of its lifting to the tangent space via the inverse exponential map (exp−1p(S)) at q, assuming that rchM(S) and the geodesic distance dM(p,q) are bounded. These bounds are motivated by the importance of the reach and local feature size to manifold learning, topological inference, and triangulating manifolds and the fact that intrinsic approaches circumvent the curse of dimensionality.","lang":"eng"}],"type":"journal_article","oa_version":"Submitted Version","intvolume":" 7","status":"public","title":"The reach of subsets of manifolds","_id":"12763","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"file_date_updated":"2023-07-14T12:03:48Z","ec_funded":1,"article_number":"17","author":[{"last_name":"Boker","first_name":"Udi","id":"31E297B6-F248-11E8-B48F-1D18A9856A87","full_name":"Boker, Udi"},{"full_name":"Henzinger, Thomas A","id":"40876CD8-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2985-7724","first_name":"Thomas A","last_name":"Henzinger"},{"first_name":"Nicolas Adrien","last_name":"Mazzocchi","id":"b26baa86-3308-11ec-87b0-8990f34baa85","full_name":"Mazzocchi, Nicolas Adrien"},{"full_name":"Sarac, Naci E","id":"8C6B42F8-C8E6-11E9-A03A-F2DCE5697425","last_name":"Sarac","first_name":"Naci E"}],"date_updated":"2023-10-09T07:14:03Z","date_created":"2023-07-14T10:00:15Z","volume":279,"year":"2023","acknowledgement":"We thank Christof Löding for pointing us to some results on PSpace-hardess of universality problems and the anonymous reviewers for their helpful comments. This work was supported in part by the ERC-2020-AdG 101020093 and the Israel Science Foundation grant 2410/22.","publication_status":"published","publisher":"Schloss Dagstuhl - Leibniz-Zentrum für Informatik","department":[{"_id":"GradSch"},{"_id":"ToHe"}],"month":"09","publication_identifier":{"isbn":["9783959772990"],"eissn":["1868-8969"]},"conference":{"end_date":"2023-09-23","location":"Antwerp, Belgium","start_date":"2023-09-18","name":"CONCUR: Conference on Concurrency Theory"},"doi":"10.4230/LIPIcs.CONCUR.2023.17","language":[{"iso":"eng"}],"oa":1,"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"arxiv":["2307.06016"]},"quality_controlled":"1","project":[{"grant_number":"101020093","_id":"62781420-2b32-11ec-9570-8d9b63373d4d","call_identifier":"H2020","name":"Vigilant Algorithmic Monitoring of Software"}],"abstract":[{"text":"The safety-liveness dichotomy is a fundamental concept in formal languages which plays a key role in verification. Recently, this dichotomy has been lifted to quantitative properties, which are arbitrary functions from infinite words to partially-ordered domains. We look into harnessing the dichotomy for the specific classes of quantitative properties expressed by quantitative automata. These automata contain finitely many states and rational-valued transition weights, and their common value functions Inf, Sup, LimInf, LimSup, LimInfAvg, LimSupAvg, and DSum map infinite words into the totallyordered domain of real numbers. In this automata-theoretic setting, we establish a connection between quantitative safety and topological continuity and provide an alternative characterization of quantitative safety and liveness in terms of their boolean counterparts. For all common value functions, we show how the safety closure of a quantitative automaton can be constructed in PTime, and we provide PSpace-complete checks of whether a given quantitative automaton is safe or live, with the exception of LimInfAvg and LimSupAvg automata, for which the safety check is in ExpSpace. Moreover, for deterministic Sup, LimInf, and LimSup automata, we give PTime decompositions into safe and live automata. These decompositions enable the separation of techniques for safety and liveness verification for quantitative specifications.","lang":"eng"}],"type":"conference","alternative_title":["LIPIcs"],"oa_version":"Published Version","file":[{"relation":"main_file","file_id":"13224","checksum":"d40e57a04448ea5c77d7e1cfb9590a81","success":1,"date_updated":"2023-07-14T12:03:48Z","date_created":"2023-07-14T12:03:48Z","access_level":"open_access","file_name":"CONCUR23.pdf","content_type":"application/pdf","file_size":755529,"creator":"esarac"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"13221","status":"public","ddc":["000"],"title":"Safety and liveness of quantitative automata","intvolume":" 279","day":"01","article_processing_charge":"No","has_accepted_license":"1","date_published":"2023-09-01T00:00:00Z","publication":"34th International Conference on Concurrency Theory","citation":{"ama":"Boker U, Henzinger TA, Mazzocchi NA, Sarac NE. Safety and liveness of quantitative automata. In: 34th International Conference on Concurrency Theory. Vol 279. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2023. doi:10.4230/LIPIcs.CONCUR.2023.17","apa":"Boker, U., Henzinger, T. A., Mazzocchi, N. A., & Sarac, N. E. (2023). Safety and liveness of quantitative automata. In 34th International Conference on Concurrency Theory (Vol. 279). Antwerp, Belgium: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. https://doi.org/10.4230/LIPIcs.CONCUR.2023.17","ieee":"U. Boker, T. A. Henzinger, N. A. Mazzocchi, and N. E. Sarac, “Safety and liveness of quantitative automata,” in 34th International Conference on Concurrency Theory, Antwerp, Belgium, 2023, vol. 279.","ista":"Boker U, Henzinger TA, Mazzocchi NA, Sarac NE. 2023. Safety and liveness of quantitative automata. 34th International Conference on Concurrency Theory. CONCUR: Conference on Concurrency Theory, LIPIcs, vol. 279, 17.","short":"U. Boker, T.A. Henzinger, N.A. Mazzocchi, N.E. Sarac, in:, 34th International Conference on Concurrency Theory, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023.","mla":"Boker, Udi, et al. “Safety and Liveness of Quantitative Automata.” 34th International Conference on Concurrency Theory, vol. 279, 17, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023, doi:10.4230/LIPIcs.CONCUR.2023.17.","chicago":"Boker, Udi, Thomas A Henzinger, Nicolas Adrien Mazzocchi, and Naci E Sarac. “Safety and Liveness of Quantitative Automata.” In 34th International Conference on Concurrency Theory, Vol. 279. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023. https://doi.org/10.4230/LIPIcs.CONCUR.2023.17."}},{"intvolume":" 108","title":"Generalized surface multifractality in two-dimensional disordered systems","status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"14406","oa_version":"Preprint","type":"journal_article","issue":"10","abstract":[{"text":"Recently, a concept of generalized multifractality, which characterizes fluctuations and correlations of critical eigenstates, was introduced and explored for all 10 symmetry classes of disordered systems. Here, by using the nonlinear sigma-model (\r\nNL\r\nσ\r\nM\r\n) field theory, we extend the theory of generalized multifractality to boundaries of systems at criticality. Our numerical simulations on two-dimensional systems of symmetry classes A, C, and AII fully confirm the analytical predictions of pure-scaling observables and Weyl symmetry relations between critical exponents of surface generalized multifractality. This demonstrates the validity of the \r\nNL\r\nσ\r\nM\r\n for the description of Anderson-localization critical phenomena, not only in the bulk but also on the boundary. The critical exponents strongly violate generalized parabolicity, in analogy with earlier results for the bulk, corroborating the conclusion that the considered Anderson-localization critical points are not described by conformal field theories. We further derive relations between generalized surface multifractal spectra and linear combinations of Lyapunov exponents of a strip in quasi-one-dimensional geometry, which hold under the assumption of invariance with respect to a logarithmic conformal map. Our numerics demonstrate that these relations hold with an excellent accuracy. Taken together, our results indicate an intriguing situation: the conformal invariance is broken but holds partially at critical points of Anderson localization.","lang":"eng"}],"article_type":"original","citation":{"ama":"Babkin S, Karcher JF, Burmistrov IS, Mirlin AD. Generalized surface multifractality in two-dimensional disordered systems. Physical Review B. 2023;108(10). doi:10.1103/PhysRevB.108.104205","ista":"Babkin S, Karcher JF, Burmistrov IS, Mirlin AD. 2023. Generalized surface multifractality in two-dimensional disordered systems. Physical Review B. 108(10), 104205.","apa":"Babkin, S., Karcher, J. F., Burmistrov, I. S., & Mirlin, A. D. (2023). Generalized surface multifractality in two-dimensional disordered systems. Physical Review B. American Physical Society. https://doi.org/10.1103/PhysRevB.108.104205","ieee":"S. Babkin, J. F. Karcher, I. S. Burmistrov, and A. D. Mirlin, “Generalized surface multifractality in two-dimensional disordered systems,” Physical Review B, vol. 108, no. 10. American Physical Society, 2023.","mla":"Babkin, Serafim, et al. “Generalized Surface Multifractality in Two-Dimensional Disordered Systems.” Physical Review B, vol. 108, no. 10, 104205, American Physical Society, 2023, doi:10.1103/PhysRevB.108.104205.","short":"S. Babkin, J.F. Karcher, I.S. Burmistrov, A.D. Mirlin, Physical Review B 108 (2023).","chicago":"Babkin, Serafim, Jonas F. Karcher, Igor S. Burmistrov, and Alexander D. Mirlin. “Generalized Surface Multifractality in Two-Dimensional Disordered Systems.” Physical Review B. American Physical Society, 2023. https://doi.org/10.1103/PhysRevB.108.104205."},"publication":"Physical Review B","date_published":"2023-09-01T00:00:00Z","scopus_import":"1","article_processing_charge":"No","day":"01","department":[{"_id":"MaSe"}],"publisher":"American Physical Society","publication_status":"published","acknowledgement":"We thank Ilya Gruzberg for many illuminating discussions. S.S.B., J.F.K., and A.D.M. acknowledge support by the Deutsche Forschungsgemeinschaft (DFG) via the Grant\r\nNo. MI 658/14-1. I.S.B. acknowledges support from Russian Science Foundation (Grant No. 22-42-04416).","year":"2023","volume":108,"date_updated":"2023-10-09T07:09:30Z","date_created":"2023-10-08T22:01:17Z","author":[{"full_name":"Babkin, Serafim","last_name":"Babkin","first_name":"Serafim","orcid":"0009-0003-7382-8036","id":"41e64307-6672-11ee-b9ad-cc7a0075a479"},{"first_name":"Jonas F.","last_name":"Karcher","full_name":"Karcher, Jonas F."},{"last_name":"Burmistrov","first_name":"Igor S.","full_name":"Burmistrov, Igor S."},{"full_name":"Mirlin, Alexander D.","first_name":"Alexander D.","last_name":"Mirlin"}],"article_number":"104205","quality_controlled":"1","main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2306.09455","open_access":"1"}],"oa":1,"external_id":{"arxiv":["2306.09455"]},"language":[{"iso":"eng"}],"doi":"10.1103/PhysRevB.108.104205","publication_identifier":{"issn":["2469-9950"],"eissn":["2469-9969"]},"month":"09"},{"alternative_title":["LNCS"],"type":"conference","abstract":[{"text":"This paper focuses on the implementation details of the baseline methods and a recent lightweight conditional model extrapolation algorithm LIMES [5] for streaming data under class-prior shift. LIMES achieves superior performance over the baseline methods, especially concerning the minimum-across-day accuracy, which is important for the users of the system. In this work, the key measures to facilitate reproducibility and enhance the credibility of the results are described.","lang":"eng"}],"publisher":"Springer Nature","department":[{"_id":"ChLa"}],"intvolume":" 14068","title":"On the implementation of baselines and lightweight conditional model extrapolation (LIMES) under class-prior shift","publication_status":"published","status":"public","_id":"14410","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2023","oa_version":"None","volume":14068,"date_updated":"2023-10-09T06:48:02Z","date_created":"2023-10-08T22:01:18Z","author":[{"first_name":"Paulina","last_name":"Tomaszewska","full_name":"Tomaszewska, Paulina"},{"full_name":"Lampert, Christoph","orcid":"0000-0001-8622-7887","id":"40C20FD2-F248-11E8-B48F-1D18A9856A87","last_name":"Lampert","first_name":"Christoph"}],"scopus_import":"1","article_processing_charge":"No","publication_identifier":{"issn":["0302-9743"],"eissn":["1611-3349"],"isbn":["9783031407727"]},"month":"08","day":"20","page":"67-73","quality_controlled":"1","citation":{"chicago":"Tomaszewska, Paulina, and Christoph Lampert. “On the Implementation of Baselines and Lightweight Conditional Model Extrapolation (LIMES) under Class-Prior Shift.” In International Workshop on Reproducible Research in Pattern Recognition, 14068:67–73. Springer Nature, 2023. https://doi.org/10.1007/978-3-031-40773-4_6.","short":"P. Tomaszewska, C. Lampert, in:, International Workshop on Reproducible Research in Pattern Recognition, Springer Nature, 2023, pp. 67–73.","mla":"Tomaszewska, Paulina, and Christoph Lampert. “On the Implementation of Baselines and Lightweight Conditional Model Extrapolation (LIMES) under Class-Prior Shift.” International Workshop on Reproducible Research in Pattern Recognition, vol. 14068, Springer Nature, 2023, pp. 67–73, doi:10.1007/978-3-031-40773-4_6.","apa":"Tomaszewska, P., & Lampert, C. (2023). On the implementation of baselines and lightweight conditional model extrapolation (LIMES) under class-prior shift. In International Workshop on Reproducible Research in Pattern Recognition (Vol. 14068, pp. 67–73). Montreal, Canada: Springer Nature. https://doi.org/10.1007/978-3-031-40773-4_6","ieee":"P. Tomaszewska and C. Lampert, “On the implementation of baselines and lightweight conditional model extrapolation (LIMES) under class-prior shift,” in International Workshop on Reproducible Research in Pattern Recognition, Montreal, Canada, 2023, vol. 14068, pp. 67–73.","ista":"Tomaszewska P, Lampert C. 2023. On the implementation of baselines and lightweight conditional model extrapolation (LIMES) under class-prior shift. International Workshop on Reproducible Research in Pattern Recognition. RRPR: Reproducible Research in Pattern Recognition, LNCS, vol. 14068, 67–73.","ama":"Tomaszewska P, Lampert C. On the implementation of baselines and lightweight conditional model extrapolation (LIMES) under class-prior shift. In: International Workshop on Reproducible Research in Pattern Recognition. Vol 14068. Springer Nature; 2023:67-73. doi:10.1007/978-3-031-40773-4_6"},"publication":"International Workshop on Reproducible Research in Pattern Recognition","language":[{"iso":"eng"}],"doi":"10.1007/978-3-031-40773-4_6","date_published":"2023-08-20T00:00:00Z","conference":{"name":"RRPR: Reproducible Research in Pattern Recognition","end_date":"2022-08-21","start_date":"2022-08-21","location":"Montreal, Canada"}},{"abstract":[{"lang":"eng","text":"We introduce hypernode automata as a new specification formalism for hyperproperties of concurrent systems. They are finite automata with nodes labeled with hypernode logic formulas and transitions labeled with actions. A hypernode logic formula specifies relations between sequences of variable values in different system executions. Unlike HyperLTL, hypernode logic takes an asynchronous view on execution traces by constraining the values and the order of value changes of each variable without correlating the timing of the changes. Different execution traces are synchronized solely through the transitions of hypernode automata. Hypernode automata naturally combine asynchronicity at the node level with synchronicity at the transition level. We show that the model-checking problem for hypernode automata is decidable over action-labeled Kripke structures, whose actions induce transitions of the specification automata. For this reason, hypernode automaton is a suitable formalism for specifying and verifying asynchronous hyperproperties, such as declassifying observational determinism in multi-threaded programs."}],"type":"conference","alternative_title":["LIPIcs"],"file":[{"file_name":"2023_LIPcs_Bartocci.pdf","access_level":"open_access","file_size":795790,"content_type":"application/pdf","creator":"dernst","relation":"main_file","file_id":"14413","date_created":"2023-10-09T07:42:45Z","date_updated":"2023-10-09T07:42:45Z","checksum":"215765e40454d806174ac0a223e8d6fa","success":1}],"oa_version":"Published Version","_id":"14405","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","ddc":["000"],"title":"Hypernode automata","intvolume":" 279","day":"01","article_processing_charge":"Yes","has_accepted_license":"1","scopus_import":"1","date_published":"2023-09-01T00:00:00Z","publication":"34th International Conference on Concurrency Theory","citation":{"apa":"Bartocci, E., Henzinger, T. A., Nickovic, D., & Oliveira da Costa, A. (2023). Hypernode automata. In 34th International Conference on Concurrency Theory (Vol. 279). Antwerp, Belgium: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. https://doi.org/10.4230/LIPIcs.CONCUR.2023.21","ieee":"E. Bartocci, T. A. Henzinger, D. Nickovic, and A. Oliveira da Costa, “Hypernode automata,” in 34th International Conference on Concurrency Theory, Antwerp, Belgium, 2023, vol. 279.","ista":"Bartocci E, Henzinger TA, Nickovic D, Oliveira da Costa A. 2023. Hypernode automata. 34th International Conference on Concurrency Theory. CONCUR: Conference on Concurrency Theory, LIPIcs, vol. 279, 21.","ama":"Bartocci E, Henzinger TA, Nickovic D, Oliveira da Costa A. Hypernode automata. In: 34th International Conference on Concurrency Theory. Vol 279. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2023. doi:10.4230/LIPIcs.CONCUR.2023.21","chicago":"Bartocci, Ezio, Thomas A Henzinger, Dejan Nickovic, and Ana Oliveira da Costa. “Hypernode Automata.” In 34th International Conference on Concurrency Theory, Vol. 279. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023. https://doi.org/10.4230/LIPIcs.CONCUR.2023.21.","short":"E. Bartocci, T.A. Henzinger, D. Nickovic, A. Oliveira da Costa, in:, 34th International Conference on Concurrency Theory, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023.","mla":"Bartocci, Ezio, et al. “Hypernode Automata.” 34th International Conference on Concurrency Theory, vol. 279, 21, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023, doi:10.4230/LIPIcs.CONCUR.2023.21."},"file_date_updated":"2023-10-09T07:42:45Z","ec_funded":1,"article_number":"21","author":[{"full_name":"Bartocci, Ezio","last_name":"Bartocci","first_name":"Ezio"},{"orcid":"0000-0002-2985-7724","id":"40876CD8-F248-11E8-B48F-1D18A9856A87","last_name":"Henzinger","first_name":"Thomas A","full_name":"Henzinger, Thomas A"},{"full_name":"Nickovic, Dejan","first_name":"Dejan","last_name":"Nickovic","id":"41BCEE5C-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Oliveira da Costa, Ana","last_name":"Oliveira da Costa","first_name":"Ana","orcid":"0000-0002-8741-5799","id":"f347ec37-6676-11ee-b395-a888cb7b4fb4"}],"date_updated":"2023-10-09T07:43:44Z","date_created":"2023-10-08T22:01:16Z","volume":279,"acknowledgement":"This work was supported in part by the Austrian Science Fund (FWF) SFB project\r\nSpyCoDe F8502, by the FWF projects ZK-35 and W1255-N23, and by the ERC Advanced Grant\r\nVAMOS 101020093.","year":"2023","publication_status":"published","department":[{"_id":"ToHe"}],"publisher":"Schloss Dagstuhl - Leibniz-Zentrum für Informatik","month":"09","publication_identifier":{"isbn":["9783959772990"],"issn":["18688969"]},"conference":{"location":"Antwerp, Belgium","start_date":"2023-09-19","end_date":"2023-09-22","name":"CONCUR: Conference on Concurrency Theory"},"doi":"10.4230/LIPIcs.CONCUR.2023.21","language":[{"iso":"eng"}],"oa":1,"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"arxiv":["2305.02836"]},"quality_controlled":"1","project":[{"_id":"62781420-2b32-11ec-9570-8d9b63373d4d","grant_number":"101020093","name":"Vigilant Algorithmic Monitoring of Software","call_identifier":"H2020"}]},{"scopus_import":"1","month":"09","day":"28","article_processing_charge":"No","publication_identifier":{"issn":["0178-8051"],"eissn":["1432-2064"]},"quality_controlled":"1","article_type":"original","publication":"Probability Theory and Related Fields","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2210.12060"}],"external_id":{"arxiv":["2210.12060"]},"oa":1,"citation":{"ista":"Cipolloni G, Erdös L, Schröder DJ. 2023. Mesoscopic central limit theorem for non-Hermitian random matrices. Probability Theory and Related Fields.","ieee":"G. Cipolloni, L. Erdös, and D. J. Schröder, “Mesoscopic central limit theorem for non-Hermitian random matrices,” Probability Theory and Related Fields. Springer Nature, 2023.","apa":"Cipolloni, G., Erdös, L., & Schröder, D. J. (2023). Mesoscopic central limit theorem for non-Hermitian random matrices. Probability Theory and Related Fields. Springer Nature. https://doi.org/10.1007/s00440-023-01229-1","ama":"Cipolloni G, Erdös L, Schröder DJ. Mesoscopic central limit theorem for non-Hermitian random matrices. Probability Theory and Related Fields. 2023. doi:10.1007/s00440-023-01229-1","chicago":"Cipolloni, Giorgio, László Erdös, and Dominik J Schröder. “Mesoscopic Central Limit Theorem for Non-Hermitian Random Matrices.” Probability Theory and Related Fields. Springer Nature, 2023. https://doi.org/10.1007/s00440-023-01229-1.","mla":"Cipolloni, Giorgio, et al. “Mesoscopic Central Limit Theorem for Non-Hermitian Random Matrices.” Probability Theory and Related Fields, Springer Nature, 2023, doi:10.1007/s00440-023-01229-1.","short":"G. Cipolloni, L. Erdös, D.J. Schröder, Probability Theory and Related Fields (2023)."},"language":[{"iso":"eng"}],"doi":"10.1007/s00440-023-01229-1","date_published":"2023-09-28T00:00:00Z","type":"journal_article","abstract":[{"text":"We prove that the mesoscopic linear statistics ∑if(na(σi−z0)) of the eigenvalues {σi}i of large n×n non-Hermitian random matrices with complex centred i.i.d. entries are asymptotically Gaussian for any H20-functions f around any point z0 in the bulk of the spectrum on any mesoscopic scale 0Science, vol. 381, no. 6665. AAAS, pp. 1413–1414, 2023.","apa":"Balazs, D., & Ibáñez, M. (2023). Widening the use of 3D printing. Science. AAAS. https://doi.org/10.1126/science.adk3070","ista":"Balazs D, Ibáñez M. 2023. Widening the use of 3D printing. Science. 381(6665), 1413–1414.","ama":"Balazs D, Ibáñez M. Widening the use of 3D printing. Science. 2023;381(6665):1413-1414. doi:10.1126/science.adk3070","chicago":"Balazs, Daniel, and Maria Ibáñez. “Widening the Use of 3D Printing.” Science. AAAS, 2023. https://doi.org/10.1126/science.adk3070.","short":"D. Balazs, M. Ibáñez, Science 381 (2023) 1413–1414.","mla":"Balazs, Daniel, and Maria Ibáñez. “Widening the Use of 3D Printing.” Science, vol. 381, no. 6665, AAAS, 2023, pp. 1413–14, doi:10.1126/science.adk3070."},"publication":"Science","date_published":"2023-09-29T00:00:00Z","scopus_import":"1","article_processing_charge":"No","day":"29"},{"article_number":"15","ec_funded":1,"file_date_updated":"2023-10-09T09:19:11Z","acknowledgement":"This work was partly funded by the ERC CoG 863818 (ForM-SMArt), the DFG Grant\r\n389792660 as part of TRR 248 (Foundations of Perspicuous Software Systems), the Cluster of\r\nExcellence EXC 2050/1 (CeTI, project ID 390696704, as part of Germany’s Excellence Strategy), and the DFG projects BA-1679/11-1 and BA-1679/12-1.","year":"2023","publisher":"Schloss Dagstuhl - Leibniz-Zentrum für Informatik","department":[{"_id":"KrCh"}],"publication_status":"published","author":[{"full_name":"Baier, Christel","first_name":"Christel","last_name":"Baier"},{"first_name":"Krishnendu","last_name":"Chatterjee","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4561-241X","full_name":"Chatterjee, Krishnendu"},{"first_name":"Tobias","last_name":"Meggendorfer","id":"b21b0c15-30a2-11eb-80dc-f13ca25802e1","orcid":"0000-0002-1712-2165","full_name":"Meggendorfer, Tobias"},{"first_name":"Jakob","last_name":"Piribauer","full_name":"Piribauer, Jakob"}],"volume":272,"date_updated":"2023-10-09T09:22:37Z","date_created":"2023-10-09T09:21:05Z","publication_identifier":{"isbn":["9783959772921"],"eissn":["1868-8969"]},"month":"08","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"external_id":{"arxiv":["2307.06611"]},"project":[{"_id":"0599E47C-7A3F-11EA-A408-12923DDC885E","grant_number":"863818","name":"Formal Methods for Stochastic Models: Algorithms and Applications","call_identifier":"H2020"}],"quality_controlled":"1","doi":"10.4230/LIPIcs.MFCS.2023.15","conference":{"start_date":"2023-08-28","location":"Bordeaux, France","end_date":"2023-09-01","name":"MFCS: Symposium on Mathematical Foundations of Computer Science"},"language":[{"iso":"eng"}],"type":"conference","alternative_title":["LIPIcs"],"abstract":[{"text":"Entropic risk (ERisk) is an established risk measure in finance, quantifying risk by an exponential re-weighting of rewards. We study ERisk for the first time in the context of turn-based stochastic games with the total reward objective. This gives rise to an objective function that demands the control of systems in a risk-averse manner. We show that the resulting games are determined and, in particular, admit optimal memoryless deterministic strategies. This contrasts risk measures that previously have been considered in the special case of Markov decision processes and that require randomization and/or memory. We provide several results on the decidability and the computational complexity of the threshold problem, i.e. whether the optimal value of ERisk exceeds a given threshold. In the most general case, the problem is decidable subject to Shanuel’s conjecture. If all inputs are rational, the resulting threshold problem can be solved using algebraic numbers, leading to decidability via a polynomial-time reduction to the existential theory of the reals. Further restrictions on the encoding of the input allow the solution of the threshold problem in NP∩coNP. Finally, an approximation algorithm for the optimal value of ERisk is provided.","lang":"eng"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"14417","intvolume":" 272","status":"public","title":"Entropic risk for turn-based stochastic games","ddc":["000"],"file":[{"file_name":"2023_LIPIcsMFCS_Baier.pdf","access_level":"open_access","creator":"dernst","file_size":826843,"content_type":"application/pdf","file_id":"14418","relation":"main_file","date_updated":"2023-10-09T09:19:11Z","date_created":"2023-10-09T09:19:11Z","success":1,"checksum":"402281b17ed669bbf149d0fdf68ac201"}],"oa_version":"Published Version","scopus_import":"1","has_accepted_license":"1","article_processing_charge":"Yes","day":"21","citation":{"chicago":"Baier, Christel, Krishnendu Chatterjee, Tobias Meggendorfer, and Jakob Piribauer. “Entropic Risk for Turn-Based Stochastic Games.” In 48th International Symposium on Mathematical Foundations of Computer Science, Vol. 272. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023. https://doi.org/10.4230/LIPIcs.MFCS.2023.15.","mla":"Baier, Christel, et al. “Entropic Risk for Turn-Based Stochastic Games.” 48th International Symposium on Mathematical Foundations of Computer Science, vol. 272, 15, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023, doi:10.4230/LIPIcs.MFCS.2023.15.","short":"C. Baier, K. Chatterjee, T. Meggendorfer, J. Piribauer, in:, 48th International Symposium on Mathematical Foundations of Computer Science, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023.","ista":"Baier C, Chatterjee K, Meggendorfer T, Piribauer J. 2023. Entropic risk for turn-based stochastic games. 48th International Symposium on Mathematical Foundations of Computer Science. MFCS: Symposium on Mathematical Foundations of Computer Science, LIPIcs, vol. 272, 15.","apa":"Baier, C., Chatterjee, K., Meggendorfer, T., & Piribauer, J. (2023). Entropic risk for turn-based stochastic games. In 48th International Symposium on Mathematical Foundations of Computer Science (Vol. 272). Bordeaux, France: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. https://doi.org/10.4230/LIPIcs.MFCS.2023.15","ieee":"C. Baier, K. Chatterjee, T. Meggendorfer, and J. Piribauer, “Entropic risk for turn-based stochastic games,” in 48th International Symposium on Mathematical Foundations of Computer Science, Bordeaux, France, 2023, vol. 272.","ama":"Baier C, Chatterjee K, Meggendorfer T, Piribauer J. Entropic risk for turn-based stochastic games. In: 48th International Symposium on Mathematical Foundations of Computer Science. Vol 272. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2023. doi:10.4230/LIPIcs.MFCS.2023.15"},"publication":"48th International Symposium on Mathematical Foundations of Computer Science","date_published":"2023-08-21T00:00:00Z"},{"publication_identifier":{"eissn":["1095-7111"],"issn":["0097-5397"]},"month":"04","language":[{"iso":"eng"}],"doi":"10.1137/21M1412918","project":[{"call_identifier":"H2020","name":"ISTplus - Postdoctoral Fellowships","_id":"260C2330-B435-11E9-9278-68D0E5697425","grant_number":"754411"},{"grant_number":"M03073","_id":"fc390959-9c52-11eb-aca3-afa58bd282b2","name":"Learning and triangulating manifolds via collapses"}],"isi":1,"quality_controlled":"1","external_id":{"isi":["001013183000012"]},"main_file_link":[{"open_access":"1","url":"https://hal-emse.ccsd.cnrs.fr/3IA-COTEDAZUR/hal-04083489v1"}],"oa":1,"ec_funded":1,"volume":52,"date_created":"2023-05-14T22:01:00Z","date_updated":"2023-10-10T07:34:35Z","related_material":{"record":[{"status":"public","relation":"earlier_version","id":"9441"}]},"author":[{"last_name":"Boissonnat","first_name":"Jean Daniel","full_name":"Boissonnat, Jean Daniel"},{"last_name":"Kachanovich","first_name":"Siargey","full_name":"Kachanovich, Siargey"},{"last_name":"Wintraecken","first_name":"Mathijs","orcid":"0000-0002-7472-2220","id":"307CFBC8-F248-11E8-B48F-1D18A9856A87","full_name":"Wintraecken, Mathijs"}],"publisher":"Society for Industrial and Applied Mathematics","department":[{"_id":"HeEd"}],"publication_status":"published","year":"2023","acknowledgement":"The authors have received funding from the European Research Council under the European Union's ERC grant greement 339025 GUDHI (Algorithmic Foundations of Geometric Un-derstanding in Higher Dimensions). The first author was supported by the French government,through the 3IA C\\^ote d'Azur Investments in the Future project managed by the National ResearchAgency (ANR) with the reference ANR-19-P3IA-0002. The third author was supported by the Eu-ropean Union's Horizon 2020 research and innovation programme under the Marie Sk\\lodowska-Curiegrant agreement 754411 and the FWF (Austrian Science Fund) grant M 3073.","article_processing_charge":"No","day":"30","scopus_import":"1","date_published":"2023-04-30T00:00:00Z","page":"452-486","article_type":"original","citation":{"apa":"Boissonnat, J. D., Kachanovich, S., & Wintraecken, M. (2023). Tracing isomanifolds in Rd in time polynomial in d using Coxeter–Freudenthal–Kuhn triangulations. SIAM Journal on Computing. Society for Industrial and Applied Mathematics. https://doi.org/10.1137/21M1412918","ieee":"J. D. Boissonnat, S. Kachanovich, and M. Wintraecken, “Tracing isomanifolds in Rd in time polynomial in d using Coxeter–Freudenthal–Kuhn triangulations,” SIAM Journal on Computing, vol. 52, no. 2. Society for Industrial and Applied Mathematics, pp. 452–486, 2023.","ista":"Boissonnat JD, Kachanovich S, Wintraecken M. 2023. Tracing isomanifolds in Rd in time polynomial in d using Coxeter–Freudenthal–Kuhn triangulations. SIAM Journal on Computing. 52(2), 452–486.","ama":"Boissonnat JD, Kachanovich S, Wintraecken M. Tracing isomanifolds in Rd in time polynomial in d using Coxeter–Freudenthal–Kuhn triangulations. SIAM Journal on Computing. 2023;52(2):452-486. doi:10.1137/21M1412918","chicago":"Boissonnat, Jean Daniel, Siargey Kachanovich, and Mathijs Wintraecken. “Tracing Isomanifolds in Rd in Time Polynomial in d Using Coxeter–Freudenthal–Kuhn Triangulations.” SIAM Journal on Computing. Society for Industrial and Applied Mathematics, 2023. https://doi.org/10.1137/21M1412918.","short":"J.D. Boissonnat, S. Kachanovich, M. Wintraecken, SIAM Journal on Computing 52 (2023) 452–486.","mla":"Boissonnat, Jean Daniel, et al. “Tracing Isomanifolds in Rd in Time Polynomial in d Using Coxeter–Freudenthal–Kuhn Triangulations.” SIAM Journal on Computing, vol. 52, no. 2, Society for Industrial and Applied Mathematics, 2023, pp. 452–86, doi:10.1137/21M1412918."},"publication":"SIAM Journal on Computing","issue":"2","abstract":[{"lang":"eng","text":"Isomanifolds are the generalization of isosurfaces to arbitrary dimension and codimension, i.e., submanifolds of Rd defined as the zero set of some multivariate multivalued smooth function f:Rd→Rd−n, where n is the intrinsic dimension of the manifold. A natural way to approximate a smooth isomanifold M=f−1(0) is to consider its piecewise linear (PL) approximation M^\r\n based on a triangulation T of the ambient space Rd. In this paper, we describe a simple algorithm to trace isomanifolds from a given starting point. The algorithm works for arbitrary dimensions n and d, and any precision D. Our main result is that, when f (or M) has bounded complexity, the complexity of the algorithm is polynomial in d and δ=1/D (and unavoidably exponential in n). Since it is known that for δ=Ω(d2.5), M^ is O(D2)-close and isotopic to M\r\n, our algorithm produces a faithful PL-approximation of isomanifolds of bounded complexity in time polynomial in d. Combining this algorithm with dimensionality reduction techniques, the dependency on d in the size of M^ can be completely removed with high probability. We also show that the algorithm can handle isomanifolds with boundary and, more generally, isostratifolds. The algorithm for isomanifolds with boundary has been implemented and experimental results are reported, showing that it is practical and can handle cases that are far ahead of the state-of-the-art. "}],"type":"journal_article","oa_version":"Submitted Version","intvolume":" 52","title":"Tracing isomanifolds in Rd in time polynomial in d using Coxeter–Freudenthal–Kuhn triangulations","status":"public","_id":"12960","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"month":"10","publication_identifier":{"issn":["0031-3203"]},"quality_controlled":"1","isi":1,"project":[{"call_identifier":"FWF","name":"Persistence and stability of geometric complexes","_id":"2561EBF4-B435-11E9-9278-68D0E5697425","grant_number":"I02979-N35"},{"name":"Discretization in Geometry and Dynamics","_id":"0aa4bc98-070f-11eb-9043-e6fff9c6a316","grant_number":"I4887"}],"external_id":{"isi":["001013526000001"]},"language":[{"iso":"eng"}],"doi":"10.1016/j.patcog.2023.109693","article_number":"109693","publication_status":"published","department":[{"_id":"HeEd"}],"publisher":"Elsevier","acknowledgement":"The first author has been partially supported by the Ministry of Science, Technological Development and Innovation of the Republic of Serbia through the project no. 451-03-47/2023-01/200156. The fourth author is funded by the DFG Collaborative Research Center TRR 109, ‘Discretization in Geometry and Dynamics’, Austrian Science Fund (FWF), grant no. I 02979-N35.","year":"2023","date_created":"2023-06-18T22:00:45Z","date_updated":"2023-10-10T07:37:16Z","volume":142,"author":[{"last_name":"Čomić","first_name":"Lidija","full_name":"Čomić, Lidija"},{"first_name":"Gaëlle","last_name":"Largeteau-Skapin","full_name":"Largeteau-Skapin, Gaëlle"},{"last_name":"Zrour","first_name":"Rita","full_name":"Zrour, Rita"},{"full_name":"Biswas, Ranita","id":"3C2B033E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-5372-7890","first_name":"Ranita","last_name":"Biswas"},{"last_name":"Andres","first_name":"Eric","full_name":"Andres, Eric"}],"scopus_import":"1","day":"01","article_processing_charge":"No","article_type":"original","publication":"Pattern Recognition","citation":{"chicago":"Čomić, Lidija, Gaëlle Largeteau-Skapin, Rita Zrour, Ranita Biswas, and Eric Andres. “Discrete Analytical Objects in the Body-Centered Cubic Grid.” Pattern Recognition. Elsevier, 2023. https://doi.org/10.1016/j.patcog.2023.109693.","mla":"Čomić, Lidija, et al. “Discrete Analytical Objects in the Body-Centered Cubic Grid.” Pattern Recognition, vol. 142, no. 10, 109693, Elsevier, 2023, doi:10.1016/j.patcog.2023.109693.","short":"L. Čomić, G. Largeteau-Skapin, R. Zrour, R. Biswas, E. Andres, Pattern Recognition 142 (2023).","ista":"Čomić L, Largeteau-Skapin G, Zrour R, Biswas R, Andres E. 2023. Discrete analytical objects in the body-centered cubic grid. Pattern Recognition. 142(10), 109693.","ieee":"L. Čomić, G. Largeteau-Skapin, R. Zrour, R. Biswas, and E. Andres, “Discrete analytical objects in the body-centered cubic grid,” Pattern Recognition, vol. 142, no. 10. Elsevier, 2023.","apa":"Čomić, L., Largeteau-Skapin, G., Zrour, R., Biswas, R., & Andres, E. (2023). Discrete analytical objects in the body-centered cubic grid. Pattern Recognition. Elsevier. https://doi.org/10.1016/j.patcog.2023.109693","ama":"Čomić L, Largeteau-Skapin G, Zrour R, Biswas R, Andres E. Discrete analytical objects in the body-centered cubic grid. Pattern Recognition. 2023;142(10). doi:10.1016/j.patcog.2023.109693"},"date_published":"2023-10-01T00:00:00Z","type":"journal_article","abstract":[{"lang":"eng","text":"We propose a characterization of discrete analytical spheres, planes and lines in the body-centered cubic (BCC) grid, both in the Cartesian and in the recently proposed alternative compact coordinate system, in which each integer triplet addresses some voxel in the grid. We define spheres and planes through double Diophantine inequalities and investigate their relevant topological features, such as functionality or the interrelation between the thickness of the objects and their connectivity and separation properties. We define lines as the intersection of planes. The number of the planes (up to six) is equal to the number of the pairs of faces of a BCC voxel that are parallel to the line."}],"issue":"10","status":"public","title":"Discrete analytical objects in the body-centered cubic grid","intvolume":" 142","_id":"13134","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"None"},{"month":"06","publication_identifier":{"eissn":["1520-5126"],"issn":["0002-7863"]},"quality_controlled":"1","isi":1,"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"external_id":{"pmid":["37390457"],"isi":["001020623900001"]},"language":[{"iso":"eng"}],"doi":"10.1021/jacs.3c04030","file_date_updated":"2023-07-12T10:22:04Z","publication_status":"published","department":[{"_id":"MaIb"},{"_id":"BiCh"}],"publisher":"American Chemical Society","year":"2023","acknowledgement":"B.C. acknowledges resources provided by the Cambridge Tier2 system operated by the University of Cambridge Research\r\nComputing Service funded by EPSRC Tier-2 capital grant EP/\r\nP020259/1.","pmid":1,"date_updated":"2023-10-11T08:45:10Z","date_created":"2023-07-12T09:16:40Z","volume":145,"author":[{"full_name":"Bunting, Rhys","first_name":"Rhys","last_name":"Bunting","id":"91deeae8-1207-11ec-b130-c194ad5b50c6","orcid":"0000-0001-6928-074X"},{"full_name":"Wodaczek, Felix","orcid":"0009-0000-1457-795X","id":"8b4b6a9f-32b0-11ee-9fa8-bbe85e26258e","last_name":"Wodaczek","first_name":"Felix"},{"full_name":"Torabi, Tina","first_name":"Tina","last_name":"Torabi"},{"id":"cbe3cda4-d82c-11eb-8dc7-8ff94289fcc9","orcid":"0000-0002-3584-9632","first_name":"Bingqing","last_name":"Cheng","full_name":"Cheng, Bingqing"}],"keyword":["Colloid and Surface Chemistry","Biochemistry","General Chemistry","Catalysis"],"day":"30","has_accepted_license":"1","article_processing_charge":"Yes (via OA deal)","article_type":"original","page":"14894-14902","publication":"Journal of the American Chemical Society","citation":{"mla":"Bunting, Rhys, et al. “Reactivity of Single-Atom Alloy Nanoparticles: Modeling the Dehydrogenation of Propane.” Journal of the American Chemical Society, vol. 145, no. 27, American Chemical Society, 2023, pp. 14894–902, doi:10.1021/jacs.3c04030.","short":"R. Bunting, F. Wodaczek, T. Torabi, B. Cheng, Journal of the American Chemical Society 145 (2023) 14894–14902.","chicago":"Bunting, Rhys, Felix Wodaczek, Tina Torabi, and Bingqing Cheng. “Reactivity of Single-Atom Alloy Nanoparticles: Modeling the Dehydrogenation of Propane.” Journal of the American Chemical Society. American Chemical Society, 2023. https://doi.org/10.1021/jacs.3c04030.","ama":"Bunting R, Wodaczek F, Torabi T, Cheng B. Reactivity of single-atom alloy nanoparticles: Modeling the dehydrogenation of propane. Journal of the American Chemical Society. 2023;145(27):14894-14902. doi:10.1021/jacs.3c04030","ista":"Bunting R, Wodaczek F, Torabi T, Cheng B. 2023. Reactivity of single-atom alloy nanoparticles: Modeling the dehydrogenation of propane. Journal of the American Chemical Society. 145(27), 14894–14902.","apa":"Bunting, R., Wodaczek, F., Torabi, T., & Cheng, B. (2023). Reactivity of single-atom alloy nanoparticles: Modeling the dehydrogenation of propane. Journal of the American Chemical Society. American Chemical Society. https://doi.org/10.1021/jacs.3c04030","ieee":"R. Bunting, F. Wodaczek, T. Torabi, and B. Cheng, “Reactivity of single-atom alloy nanoparticles: Modeling the dehydrogenation of propane,” Journal of the American Chemical Society, vol. 145, no. 27. American Chemical Society, pp. 14894–14902, 2023."},"date_published":"2023-06-30T00:00:00Z","type":"journal_article","abstract":[{"text":"Physical catalysts often have multiple sites where reactions can take place. One prominent example is single-atom alloys, where the reactive dopant atoms can preferentially locate in the bulk or at different sites on the surface of the nanoparticle. However, ab initio modeling of catalysts usually only considers one site of the catalyst, neglecting the effects of multiple sites. Here, nanoparticles of copper doped with single-atom rhodium or palladium are modeled for the dehydrogenation of propane. Single-atom alloy nanoparticles are simulated at 400–600 K, using machine learning potentials trained on density functional theory calculations, and then the occupation of different single-atom active sites is identified using a similarity kernel. Further, the turnover frequency for all possible sites is calculated for propane dehydrogenation to propene through microkinetic modeling using density functional theory calculations. The total turnover frequencies of the whole nanoparticle are then described from both the population and the individual turnover frequency of each site. Under operating conditions, rhodium as a dopant is found to almost exclusively occupy (111) surface sites while palladium as a dopant occupies a greater variety of facets. Undercoordinated dopant surface sites are found to tend to be more reactive for propane dehydrogenation compared to the (111) surface. It is found that considering the dynamics of the single-atom alloy nanoparticle has a profound effect on the calculated catalytic activity of single-atom alloys by several orders of magnitude.","lang":"eng"}],"issue":"27","ddc":["540"],"status":"public","title":"Reactivity of single-atom alloy nanoparticles: Modeling the dehydrogenation of propane","intvolume":" 145","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","_id":"13216","file":[{"date_updated":"2023-07-12T10:22:04Z","date_created":"2023-07-12T10:22:04Z","success":1,"checksum":"e07d5323f9c0e5cbd1ad6453f29440ab","file_id":"13219","relation":"main_file","creator":"cchlebak","content_type":"application/pdf","file_size":3155843,"file_name":"2023_JACS_Bunting.pdf","access_level":"open_access"}],"oa_version":"Published Version"},{"scopus_import":"1","article_processing_charge":"No","has_accepted_license":"1","day":"04","article_type":"original","citation":{"ama":"Unterweger IA, Klepstad J, Hannezo EB, Lundegaard PR, Trusina A, Ober EA. Lineage tracing identifies heterogeneous hepatoblast contribution to cell lineages and postembryonic organ growth dynamics. PLoS Biology. 2023;21(10). doi:10.1371/journal.pbio.3002315","ista":"Unterweger IA, Klepstad J, Hannezo EB, Lundegaard PR, Trusina A, Ober EA. 2023. Lineage tracing identifies heterogeneous hepatoblast contribution to cell lineages and postembryonic organ growth dynamics. PLoS Biology. 21(10), e3002315.","ieee":"I. A. Unterweger, J. Klepstad, E. B. Hannezo, P. R. Lundegaard, A. Trusina, and E. A. Ober, “Lineage tracing identifies heterogeneous hepatoblast contribution to cell lineages and postembryonic organ growth dynamics,” PLoS Biology, vol. 21, no. 10. Public Library of Science, 2023.","apa":"Unterweger, I. A., Klepstad, J., Hannezo, E. B., Lundegaard, P. R., Trusina, A., & Ober, E. A. (2023). Lineage tracing identifies heterogeneous hepatoblast contribution to cell lineages and postembryonic organ growth dynamics. PLoS Biology. Public Library of Science. https://doi.org/10.1371/journal.pbio.3002315","mla":"Unterweger, Iris A., et al. “Lineage Tracing Identifies Heterogeneous Hepatoblast Contribution to Cell Lineages and Postembryonic Organ Growth Dynamics.” PLoS Biology, vol. 21, no. 10, e3002315, Public Library of Science, 2023, doi:10.1371/journal.pbio.3002315.","short":"I.A. Unterweger, J. Klepstad, E.B. Hannezo, P.R. Lundegaard, A. Trusina, E.A. Ober, PLoS Biology 21 (2023).","chicago":"Unterweger, Iris A., Julie Klepstad, Edouard B Hannezo, Pia R. Lundegaard, Ala Trusina, and Elke A. Ober. “Lineage Tracing Identifies Heterogeneous Hepatoblast Contribution to Cell Lineages and Postembryonic Organ Growth Dynamics.” PLoS Biology. Public Library of Science, 2023. https://doi.org/10.1371/journal.pbio.3002315."},"publication":"PLoS Biology","date_published":"2023-10-04T00:00:00Z","type":"journal_article","issue":"10","abstract":[{"lang":"eng","text":"To meet the physiological demands of the body, organs need to establish a functional tissue architecture and adequate size as the embryo develops to adulthood. In the liver, uni- and bipotent progenitor differentiation into hepatocytes and biliary epithelial cells (BECs), and their relative proportions, comprise the functional architecture. Yet, the contribution of individual liver progenitors at the organ level to both fates, and their specific proportion, is unresolved. Combining mathematical modelling with organ-wide, multispectral FRaeppli-NLS lineage tracing in zebrafish, we demonstrate that a precise BEC-to-hepatocyte ratio is established (i) fast, (ii) solely by heterogeneous lineage decisions from uni- and bipotent progenitors, and (iii) independent of subsequent cell type–specific proliferation. Extending lineage tracing to adulthood determined that embryonic cells undergo spatially heterogeneous three-dimensional growth associated with distinct environments. Strikingly, giant clusters comprising almost half a ventral lobe suggest lobe-specific dominant-like growth behaviours. We show substantial hepatocyte polyploidy in juveniles representing another hallmark of postembryonic liver growth. Our findings uncover heterogeneous progenitor contributions to tissue architecture-defining cell type proportions and postembryonic organ growth as key mechanisms forming the adult liver."}],"intvolume":" 21","title":"Lineage tracing identifies heterogeneous hepatoblast contribution to cell lineages and postembryonic organ growth dynamics","status":"public","ddc":["570"],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"14426","file":[{"file_size":6193110,"content_type":"application/pdf","creator":"dernst","access_level":"open_access","file_name":"2023_PloSBiology_Unterweger.pdf","checksum":"40a2b11b41d70a0e5939f8a52b66e389","success":1,"date_created":"2023-10-16T07:20:49Z","date_updated":"2023-10-16T07:20:49Z","relation":"main_file","file_id":"14431"}],"oa_version":"Published Version","publication_identifier":{"eissn":["1545-7885"]},"month":"10","project":[{"call_identifier":"H2020","name":"Design Principles of Branching Morphogenesis","_id":"05943252-7A3F-11EA-A408-12923DDC885E","grant_number":"851288"}],"quality_controlled":"1","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"language":[{"iso":"eng"}],"doi":"10.1371/journal.pbio.3002315","article_number":"e3002315","ec_funded":1,"file_date_updated":"2023-10-16T07:20:49Z","department":[{"_id":"EdHa"}],"publisher":"Public Library of Science","publication_status":"published","acknowledgement":"We thank the Ober group for discussion and comments on the manuscript. We are grateful to\r\nDr. F. Lemaigre for feedback on the manuscript and Dr. T. Piotrowski for invaluable support.\r\nWe thank the department of experimental medicine (AEM) in Copenhagen for expert fish\r\ncare. We gratefully acknowledge the DanStem Imaging Platform (University of Copenhagen)\r\nfor support and assistance in this work.\r\nThis work is supported by Novo Nordisk Foundation grant NNF17CC0027852 (EAO);\r\nNordisk Foundation grant NNF19OC0058327 (EAO); Novo Nordisk Foundation grant\r\nNNF17OC0031204 (PRL); https://novonordiskfonden.dk/en/; Danish National\r\nResearch Foundation grant DNRF116 (EAO and AT); https://dg.dk/en/; John and Birthe Meyer\r\nFoundation (PRL) and European Research Council (ERC) under the EU Horizon 2020 research and Innovation Programme Grant Agreement No. 851288 (EH).","year":"2023","volume":21,"date_created":"2023-10-15T22:01:10Z","date_updated":"2023-10-16T07:25:48Z","related_material":{"link":[{"url":"https://github.com/JulieKlepstad/LiverDevelopment","relation":"software"}]},"author":[{"first_name":"Iris A.","last_name":"Unterweger","full_name":"Unterweger, Iris A."},{"last_name":"Klepstad","first_name":"Julie","full_name":"Klepstad, Julie"},{"full_name":"Hannezo, Edouard B","id":"3A9DB764-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6005-1561","first_name":"Edouard B","last_name":"Hannezo"},{"full_name":"Lundegaard, Pia R.","last_name":"Lundegaard","first_name":"Pia R."},{"first_name":"Ala","last_name":"Trusina","full_name":"Trusina, Ala"},{"last_name":"Ober","first_name":"Elke A.","full_name":"Ober, Elke A."}]},{"conference":{"name":"CRYPTO: Advances in Cryptology","end_date":"2023-08-24","start_date":"2023-08-20","location":"Santa Barbara, CA, United States"},"doi":"10.1007/978-3-031-38545-2_17","language":[{"iso":"eng"}],"oa":1,"main_file_link":[{"url":"https://eprint.iacr.org/2023/1041","open_access":"1"}],"quality_controlled":"1","month":"08","publication_identifier":{"eissn":["1611-3349"],"isbn":["9783031385445"],"issn":["0302-9743"]},"author":[{"first_name":"Yevgeniy","last_name":"Dodis","full_name":"Dodis, Yevgeniy"},{"first_name":"Niels","last_name":"Ferguson","full_name":"Ferguson, Niels"},{"last_name":"Goldin","first_name":"Eli","full_name":"Goldin, Eli"},{"full_name":"Hall, Peter","first_name":"Peter","last_name":"Hall"},{"full_name":"Pietrzak, Krzysztof Z","id":"3E04A7AA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-9139-1654","first_name":"Krzysztof Z","last_name":"Pietrzak"}],"date_updated":"2023-10-16T08:02:11Z","date_created":"2023-10-15T22:01:11Z","volume":14082,"year":"2023","publication_status":"published","department":[{"_id":"KrPi"}],"publisher":"Springer Nature","date_published":"2023-08-09T00:00:00Z","publication":"43rd Annual International Cryptology Conference","citation":{"ista":"Dodis Y, Ferguson N, Goldin E, Hall P, Pietrzak KZ. 2023. Random oracle combiners: Breaking the concatenation barrier for collision-resistance. 43rd Annual International Cryptology Conference. CRYPTO: Advances in Cryptology, LNCS, vol. 14082, 514–546.","ieee":"Y. Dodis, N. Ferguson, E. Goldin, P. Hall, and K. Z. Pietrzak, “Random oracle combiners: Breaking the concatenation barrier for collision-resistance,” in 43rd Annual International Cryptology Conference, Santa Barbara, CA, United States, 2023, vol. 14082, pp. 514–546.","apa":"Dodis, Y., Ferguson, N., Goldin, E., Hall, P., & Pietrzak, K. Z. (2023). Random oracle combiners: Breaking the concatenation barrier for collision-resistance. In 43rd Annual International Cryptology Conference (Vol. 14082, pp. 514–546). Santa Barbara, CA, United States: Springer Nature. https://doi.org/10.1007/978-3-031-38545-2_17","ama":"Dodis Y, Ferguson N, Goldin E, Hall P, Pietrzak KZ. Random oracle combiners: Breaking the concatenation barrier for collision-resistance. In: 43rd Annual International Cryptology Conference. Vol 14082. Springer Nature; 2023:514-546. doi:10.1007/978-3-031-38545-2_17","chicago":"Dodis, Yevgeniy, Niels Ferguson, Eli Goldin, Peter Hall, and Krzysztof Z Pietrzak. “Random Oracle Combiners: Breaking the Concatenation Barrier for Collision-Resistance.” In 43rd Annual International Cryptology Conference, 14082:514–46. Springer Nature, 2023. https://doi.org/10.1007/978-3-031-38545-2_17.","mla":"Dodis, Yevgeniy, et al. “Random Oracle Combiners: Breaking the Concatenation Barrier for Collision-Resistance.” 43rd Annual International Cryptology Conference, vol. 14082, Springer Nature, 2023, pp. 514–46, doi:10.1007/978-3-031-38545-2_17.","short":"Y. Dodis, N. Ferguson, E. Goldin, P. Hall, K.Z. Pietrzak, in:, 43rd Annual International Cryptology Conference, Springer Nature, 2023, pp. 514–546."},"page":"514-546","day":"09","article_processing_charge":"No","scopus_import":"1","oa_version":"Preprint","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"14428","status":"public","title":"Random oracle combiners: Breaking the concatenation barrier for collision-resistance","intvolume":" 14082","abstract":[{"text":"Suppose we have two hash functions h1 and h2, but we trust the security of only one of them. To mitigate this worry, we wish to build a hash combiner Ch1,h2 which is secure so long as one of the underlying hash functions is. This question has been well-studied in the regime of collision resistance. In this case, concatenating the two hash function outputs clearly works. Unfortunately, a long series of works (Boneh and Boyen, CRYPTO’06; Pietrzak, Eurocrypt’07; Pietrzak, CRYPTO’08) showed no (noticeably) shorter combiner for collision resistance is possible.\r\nIn this work, we revisit this pessimistic state of affairs, motivated by the observation that collision-resistance is insufficient for many interesting applications of cryptographic hash functions anyway. We argue the right formulation of the “hash combiner” is to build what we call random oracle (RO) combiners, utilizing stronger assumptions for stronger constructions.\r\nIndeed, we circumvent the previous lower bounds for collision resistance by constructing a simple length-preserving RO combiner C˜h1,h2Z1,Z2(M)=h1(M,Z1)⊕h2(M,Z2),where Z1,Z2\r\n are random salts of appropriate length. We show that this extra randomness is necessary for RO combiners, and indeed our construction is somewhat tight with this lower bound.\r\nOn the negative side, we show that one cannot generically apply the composition theorem to further replace “monolithic” hash functions h1 and h2 by some simpler indifferentiable construction (such as the Merkle-Damgård transformation) from smaller components, such as fixed-length compression functions. Finally, despite this issue, we directly prove collision resistance of the Merkle-Damgård variant of our combiner, where h1 and h2 are replaced by iterative Merkle-Damgård hashes applied to a fixed-length compression function. Thus, we can still subvert the concatenation barrier for collision-resistance combiners while utilizing practically small fixed-length components underneath.","lang":"eng"}],"type":"conference","alternative_title":["LNCS"]},{"date_created":"2023-05-22T08:41:48Z","date_updated":"2023-10-17T08:44:53Z","volume":2654,"author":[{"full_name":"Leithner, Alexander F","orcid":"0000-0002-1073-744X","id":"3B1B77E4-F248-11E8-B48F-1D18A9856A87","last_name":"Leithner","first_name":"Alexander F"},{"last_name":"Merrin","first_name":"Jack","orcid":"0000-0001-5145-4609","id":"4515C308-F248-11E8-B48F-1D18A9856A87","full_name":"Merrin, Jack"},{"orcid":"0000-0002-6620-9179","id":"41E9FBEA-F248-11E8-B48F-1D18A9856A87","last_name":"Sixt","first_name":"Michael K","full_name":"Sixt, Michael K"}],"publication_status":"published","editor":[{"full_name":"Baldari, Cosima","last_name":"Baldari","first_name":"Cosima"},{"full_name":"Dustin, Michael","first_name":"Michael","last_name":"Dustin"}],"department":[{"_id":"MiSi"},{"_id":"NanoFab"}],"publisher":"Springer Nature","year":"2023","acknowledgement":"A.L. was funded by an Erwin Schrödinger postdoctoral fellowship of the Austrian Science Fund (FWF, project number: J4542-B) and is an EMBO non-stipendiary postdoctoral fellow. This work was supported by a European Research Council grant ERC-CoG-72437 to M.S. We thank the Imaging & Optics facility, the Nanofabrication facility, and the Miba Machine Shop of ISTA for their excellent support.","pmid":1,"ec_funded":1,"place":"New York, NY","acknowledged_ssus":[{"_id":"Bio"},{"_id":"NanoFab"},{"_id":"M-Shop"}],"language":[{"iso":"eng"}],"doi":"10.1007/978-1-0716-3135-5_9","quality_controlled":"1","project":[{"call_identifier":"H2020","name":"Cellular navigation along spatial gradients","grant_number":"724373","_id":"25FE9508-B435-11E9-9278-68D0E5697425"}],"external_id":{"pmid":["37106180"]},"month":"04","publication_identifier":{"isbn":["9781071631348"],"eissn":["1940-6029"],"eisbn":["9781071631355"],"issn":["1064-3745"]},"oa_version":"None","status":"public","title":"En-Face Imaging of T Cell-Dendritic Cell Immunological Synapses","intvolume":" 2654","_id":"13052","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","abstract":[{"lang":"eng","text":"Imaging of the immunological synapse (IS) between dendritic cells (DCs) and T cells in suspension is hampered by suboptimal alignment of cell-cell contacts along the vertical imaging plane. This requires optical sectioning that often results in unsatisfactory resolution in time and space. Here, we present a workflow where DCs and T cells are confined between a layer of glass and polydimethylsiloxane (PDMS) that orients the cells along one, horizontal imaging plane, allowing for fast en-face-imaging of the DC-T cell IS."}],"alternative_title":["Methods in Molecular Biology"],"type":"book_chapter","date_published":"2023-04-28T00:00:00Z","page":"137-147","publication":"The Immune Synapse","citation":{"ama":"Leithner AF, Merrin J, Sixt MK. En-Face Imaging of T Cell-Dendritic Cell Immunological Synapses. In: Baldari C, Dustin M, eds. The Immune Synapse. Vol 2654. MIMB. New York, NY: Springer Nature; 2023:137-147. doi:10.1007/978-1-0716-3135-5_9","ieee":"A. F. Leithner, J. Merrin, and M. K. Sixt, “En-Face Imaging of T Cell-Dendritic Cell Immunological Synapses,” in The Immune Synapse, vol. 2654, C. Baldari and M. Dustin, Eds. New York, NY: Springer Nature, 2023, pp. 137–147.","apa":"Leithner, A. F., Merrin, J., & Sixt, M. K. (2023). En-Face Imaging of T Cell-Dendritic Cell Immunological Synapses. In C. Baldari & M. Dustin (Eds.), The Immune Synapse (Vol. 2654, pp. 137–147). New York, NY: Springer Nature. https://doi.org/10.1007/978-1-0716-3135-5_9","ista":"Leithner AF, Merrin J, Sixt MK. 2023.En-Face Imaging of T Cell-Dendritic Cell Immunological Synapses. In: The Immune Synapse. Methods in Molecular Biology, vol. 2654, 137–147.","short":"A.F. Leithner, J. Merrin, M.K. Sixt, in:, C. Baldari, M. Dustin (Eds.), The Immune Synapse, Springer Nature, New York, NY, 2023, pp. 137–147.","mla":"Leithner, Alexander F., et al. “En-Face Imaging of T Cell-Dendritic Cell Immunological Synapses.” The Immune Synapse, edited by Cosima Baldari and Michael Dustin, vol. 2654, Springer Nature, 2023, pp. 137–47, doi:10.1007/978-1-0716-3135-5_9.","chicago":"Leithner, Alexander F, Jack Merrin, and Michael K Sixt. “En-Face Imaging of T Cell-Dendritic Cell Immunological Synapses.” In The Immune Synapse, edited by Cosima Baldari and Michael Dustin, 2654:137–47. MIMB. New York, NY: Springer Nature, 2023. https://doi.org/10.1007/978-1-0716-3135-5_9."},"day":"28","article_processing_charge":"No","series_title":"MIMB","scopus_import":"1"},{"volume":207,"date_updated":"2023-10-17T09:15:17Z","date_created":"2023-01-26T21:17:04Z","author":[{"full_name":"Diao, Yijie","id":"7b7eb4ca-eb2c-11ec-b98b-accec0b20c3b","orcid":"0000-0002-4989-5330","first_name":"Yijie","last_name":"Diao"}],"publisher":"Instytut Matematyczny","department":[{"_id":"GradSch"}],"publication_status":"published","acknowledgement":"This article is a version the author’s master thesis at the University of Bonn. The author would like to thank his advisor Valentin Blomer for introducing the problem, and giving generous feedback and encouragement along the way, especially during the global pandemic.\r\nThe author thanks Edgar Assing for his lectures on analytic number theory. Finally, the author is grateful to the anonymous referees for their valuable time and comments.\r\n","year":"2023","language":[{"iso":"eng"}],"doi":"10.4064/aa210830-24-11","quality_controlled":"1","isi":1,"oa":1,"external_id":{"arxiv":["2103.08268"],"isi":["000912903000001"]},"main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2103.08268"}],"publication_identifier":{"issn":["0065-1036"],"eissn":["1730-6264"]},"month":"01","oa_version":"Preprint","intvolume":" 207","status":"public","title":"Density of the union of positive diagonal binary quadratic forms","_id":"12406","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","abstract":[{"lang":"eng","text":"Let X be a sufficiently large positive integer. We prove that one may choose a subset S of primes with cardinality O(logX) such that a positive proportion of integers less than X can be represented by x2+py2 for at least one p∈S."}],"type":"journal_article","date_published":"2023-01-09T00:00:00Z","page":"1-17","article_type":"original","citation":{"short":"Y. Diao, Acta Arithmetica 207 (2023) 1–17.","mla":"Diao, Yijie. “Density of the Union of Positive Diagonal Binary Quadratic Forms.” Acta Arithmetica, vol. 207, Instytut Matematyczny, 2023, pp. 1–17, doi:10.4064/aa210830-24-11.","chicago":"Diao, Yijie. “Density of the Union of Positive Diagonal Binary Quadratic Forms.” Acta Arithmetica. Instytut Matematyczny, 2023. https://doi.org/10.4064/aa210830-24-11.","ama":"Diao Y. Density of the union of positive diagonal binary quadratic forms. Acta Arithmetica. 2023;207:1-17. doi:10.4064/aa210830-24-11","apa":"Diao, Y. (2023). Density of the union of positive diagonal binary quadratic forms. Acta Arithmetica. Instytut Matematyczny. https://doi.org/10.4064/aa210830-24-11","ieee":"Y. Diao, “Density of the union of positive diagonal binary quadratic forms,” Acta Arithmetica, vol. 207. Instytut Matematyczny, pp. 1–17, 2023.","ista":"Diao Y. 2023. Density of the union of positive diagonal binary quadratic forms. Acta Arithmetica. 207, 1–17."},"publication":"Acta Arithmetica","article_processing_charge":"No","day":"09","keyword":["Algebra","Number Theory"]},{"acknowledgement":"This work was supported by the European Research Council under grant agreement no. 758053 (ERC StG QUNNECT), the European Union’s Horizon 2020 research and innovation program under grant agreement no. 899354 (FETopen SuperQuLAN), and the Austrian Science Fund (FWF) through BeyondC (F7105). L.Q. acknowledges generous support from the ISTFELLOW programme. W.H. is the recipient of an ISTplus postdoctoral fellowship with funding from the European Union’s Horizon 2020 research and innovation program under the Marie Skłodowska-Curie grant agreement no. 754411. G.A. is the recipient of a DOC fellowship of the Austrian Academy of Sciences at IST Austria.","year":"2023","pmid":1,"publication_status":"published","department":[{"_id":"JoFi"}],"publisher":"Nature Research","author":[{"first_name":"Liu","last_name":"Qiu","id":"45e99c0d-1eb1-11eb-9b96-ed8ab2983cac","orcid":"0000-0003-4345-4267","full_name":"Qiu, Liu"},{"first_name":"Rishabh","last_name":"Sahu","id":"47D26E34-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6264-2162","full_name":"Sahu, Rishabh"},{"full_name":"Hease, William J","id":"29705398-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-9868-2166","first_name":"William J","last_name":"Hease"},{"full_name":"Arnold, Georg M","first_name":"Georg M","last_name":"Arnold","id":"3770C838-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-1397-7876"},{"full_name":"Fink, Johannes M","first_name":"Johannes M","last_name":"Fink","id":"4B591CBA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8112-028X"}],"date_updated":"2023-10-17T11:46:12Z","date_created":"2023-07-09T22:01:11Z","volume":14,"article_number":"3784","file_date_updated":"2023-07-10T10:10:54Z","ec_funded":1,"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"isi":["001018100800002"],"pmid":["37355691"],"arxiv":["2210.12443"]},"oa":1,"quality_controlled":"1","isi":1,"project":[{"grant_number":"758053","_id":"26336814-B435-11E9-9278-68D0E5697425","name":"A Fiber Optic Transceiver for Superconducting Qubits","call_identifier":"H2020"},{"name":"Quantum Local Area Networks with Superconducting Qubits","call_identifier":"H2020","grant_number":"899354","_id":"9B868D20-BA93-11EA-9121-9846C619BF3A"},{"_id":"bdb108fd-d553-11ed-ba76-83dc74a9864f","name":"QUANTUM INFORMATION SYSTEMS BEYOND CLASSICAL CAPABILITIES / P5- Integration of Superconducting Quantum Circuits"},{"name":"ISTplus - Postdoctoral Fellowships","call_identifier":"H2020","_id":"260C2330-B435-11E9-9278-68D0E5697425","grant_number":"754411"},{"_id":"25681D80-B435-11E9-9278-68D0E5697425","grant_number":"291734","call_identifier":"FP7","name":"International IST Postdoc Fellowship Programme"},{"name":"Coherent on-chip conversion of superconducting qubit signals from microwaves to optical frequencies","_id":"2671EB66-B435-11E9-9278-68D0E5697425"}],"doi":"10.1038/s41467-023-39493-3","language":[{"iso":"eng"}],"month":"06","publication_identifier":{"eissn":["2041-1723"]},"_id":"13200","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","title":"Coherent optical control of a superconducting microwave cavity via electro-optical dynamical back-action","ddc":["000"],"intvolume":" 14","file":[{"file_name":"2023_NatureComms_Qiu.pdf","access_level":"open_access","content_type":"application/pdf","file_size":1349134,"creator":"alisjak","relation":"main_file","file_id":"13206","date_updated":"2023-07-10T10:10:54Z","date_created":"2023-07-10T10:10:54Z","checksum":"ec7ccd2c08f90d59cab302fd0d7776a4","success":1}],"oa_version":"Published Version","type":"journal_article","abstract":[{"text":"Recent quantum technologies have established precise quantum control of various microscopic systems using electromagnetic waves. Interfaces based on cryogenic cavity electro-optic systems are particularly promising, due to the direct interaction between microwave and optical fields in the quantum regime. Quantum optical control of superconducting microwave circuits has been precluded so far due to the weak electro-optical coupling as well as quasi-particles induced by the pump laser. Here we report the coherent control of a superconducting microwave cavity using laser pulses in a multimode electro-optical device at millikelvin temperature with near-unity cooperativity. Both the stationary and instantaneous responses of the microwave and optical modes comply with the coherent electro-optical interaction, and reveal only minuscule amount of excess back-action with an unanticipated time delay. Our demonstration enables wide ranges of applications beyond quantum transductions, from squeezing and quantum non-demolition measurements of microwave fields, to entanglement generation and hybrid quantum networks.","lang":"eng"}],"publication":"Nature Communications","citation":{"mla":"Qiu, Liu, et al. “Coherent Optical Control of a Superconducting Microwave Cavity via Electro-Optical Dynamical Back-Action.” Nature Communications, vol. 14, 3784, Nature Research, 2023, doi:10.1038/s41467-023-39493-3.","short":"L. Qiu, R. Sahu, W.J. Hease, G.M. Arnold, J.M. Fink, Nature Communications 14 (2023).","chicago":"Qiu, Liu, Rishabh Sahu, William J Hease, Georg M Arnold, and Johannes M Fink. “Coherent Optical Control of a Superconducting Microwave Cavity via Electro-Optical Dynamical Back-Action.” Nature Communications. Nature Research, 2023. https://doi.org/10.1038/s41467-023-39493-3.","ama":"Qiu L, Sahu R, Hease WJ, Arnold GM, Fink JM. Coherent optical control of a superconducting microwave cavity via electro-optical dynamical back-action. Nature Communications. 2023;14. doi:10.1038/s41467-023-39493-3","ista":"Qiu L, Sahu R, Hease WJ, Arnold GM, Fink JM. 2023. Coherent optical control of a superconducting microwave cavity via electro-optical dynamical back-action. Nature Communications. 14, 3784.","apa":"Qiu, L., Sahu, R., Hease, W. J., Arnold, G. M., & Fink, J. M. (2023). Coherent optical control of a superconducting microwave cavity via electro-optical dynamical back-action. Nature Communications. Nature Research. https://doi.org/10.1038/s41467-023-39493-3","ieee":"L. Qiu, R. Sahu, W. J. Hease, G. M. Arnold, and J. M. Fink, “Coherent optical control of a superconducting microwave cavity via electro-optical dynamical back-action,” Nature Communications, vol. 14. Nature Research, 2023."},"article_type":"original","date_published":"2023-06-24T00:00:00Z","scopus_import":"1","day":"24","has_accepted_license":"1","article_processing_charge":"No"},{"oa_version":"Published Version","file":[{"relation":"main_file","file_id":"13323","date_updated":"2023-07-31T07:30:48Z","date_created":"2023-07-31T07:30:48Z","checksum":"1fc06228afdb3aa80cf8e7766bcf9dc5","success":1,"file_name":"2023_PNAS_Barbier.pdf","access_level":"open_access","file_size":995933,"content_type":"application/pdf","creator":"dernst"}],"_id":"13315","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","intvolume":" 120","title":"Fundamental limits in structured principal component analysis and how to reach them","status":"public","ddc":["000"],"issue":"30","abstract":[{"text":"How do statistical dependencies in measurement noise influence high-dimensional inference? To answer this, we study the paradigmatic spiked matrix model of principal components analysis (PCA), where a rank-one matrix is corrupted by additive noise. We go beyond the usual independence assumption on the noise entries, by drawing the noise from a low-order polynomial orthogonal matrix ensemble. The resulting noise correlations make the setting relevant for applications but analytically challenging. We provide characterization of the Bayes optimal limits of inference in this model. If the spike is rotation invariant, we show that standard spectral PCA is optimal. However, for more general priors, both PCA and the existing approximate message-passing algorithm (AMP) fall short of achieving the information-theoretic limits, which we compute using the replica method from statistical physics. We thus propose an AMP, inspired by the theory of adaptive Thouless–Anderson–Palmer equations, which is empirically observed to saturate the conjectured theoretical limit. This AMP comes with a rigorous state evolution analysis tracking its performance. Although we focus on specific noise distributions, our methodology can be generalized to a wide class of trace matrix ensembles at the cost of more involved expressions. Finally, despite the seemingly strong assumption of rotation-invariant noise, our theory empirically predicts algorithmic performance on real data, pointing at strong universality properties.","lang":"eng"}],"type":"journal_article","date_published":"2023-07-25T00:00:00Z","citation":{"ieee":"J. Barbier, F. Camilli, M. Mondelli, and M. Sáenz, “Fundamental limits in structured principal component analysis and how to reach them,” Proceedings of the National Academy of Sciences of the United States of America, vol. 120, no. 30. National Academy of Sciences, 2023.","apa":"Barbier, J., Camilli, F., Mondelli, M., & Sáenz, M. (2023). Fundamental limits in structured principal component analysis and how to reach them. Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences. https://doi.org/10.1073/pnas.2302028120","ista":"Barbier J, Camilli F, Mondelli M, Sáenz M. 2023. Fundamental limits in structured principal component analysis and how to reach them. Proceedings of the National Academy of Sciences of the United States of America. 120(30), e2302028120.","ama":"Barbier J, Camilli F, Mondelli M, Sáenz M. Fundamental limits in structured principal component analysis and how to reach them. Proceedings of the National Academy of Sciences of the United States of America. 2023;120(30). doi:10.1073/pnas.2302028120","chicago":"Barbier, Jean, Francesco Camilli, Marco Mondelli, and Manuel Sáenz. “Fundamental Limits in Structured Principal Component Analysis and How to Reach Them.” Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences, 2023. https://doi.org/10.1073/pnas.2302028120.","short":"J. Barbier, F. Camilli, M. Mondelli, M. Sáenz, Proceedings of the National Academy of Sciences of the United States of America 120 (2023).","mla":"Barbier, Jean, et al. “Fundamental Limits in Structured Principal Component Analysis and How to Reach Them.” Proceedings of the National Academy of Sciences of the United States of America, vol. 120, no. 30, e2302028120, National Academy of Sciences, 2023, doi:10.1073/pnas.2302028120."},"publication":"Proceedings of the National Academy of Sciences of the United States of America","article_type":"original","article_processing_charge":"Yes (in subscription journal)","has_accepted_license":"1","day":"25","scopus_import":"1","related_material":{"link":[{"relation":"software","url":"https://github.com/fcamilli95/Structured-PCA-"}]},"author":[{"full_name":"Barbier, Jean","last_name":"Barbier","first_name":"Jean"},{"full_name":"Camilli, Francesco","first_name":"Francesco","last_name":"Camilli"},{"full_name":"Mondelli, Marco","orcid":"0000-0002-3242-7020","id":"27EB676C-8706-11E9-9510-7717E6697425","last_name":"Mondelli","first_name":"Marco"},{"first_name":"Manuel","last_name":"Sáenz","full_name":"Sáenz, Manuel"}],"volume":120,"date_updated":"2023-10-17T11:44:55Z","date_created":"2023-07-30T22:01:02Z","pmid":1,"year":"2023","acknowledgement":"J.B. was funded by the European Union (ERC, CHORAL, project number 101039794). Views and opinions expressed are however those of the author(s) only and do not necessarily reflect those of the European Union or the European Research Council. Neither the European Union nor the granting authority can be held responsible for them. M.M. was supported by the 2019 Lopez-Loreta Prize. We would like to thank the reviewers for the insightful comments and, in particular, for suggesting the BAMP-inspired denoisers leading to AMP-AP.","department":[{"_id":"MaMo"}],"publisher":"National Academy of Sciences","publication_status":"published","file_date_updated":"2023-07-31T07:30:48Z","article_number":"e2302028120","doi":"10.1073/pnas.2302028120","language":[{"iso":"eng"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"pmid":["37463204"]},"oa":1,"project":[{"name":"Prix Lopez-Loretta 2019 - Marco Mondelli","_id":"059876FA-7A3F-11EA-A408-12923DDC885E"}],"quality_controlled":"1","publication_identifier":{"eissn":["1091-6490"]},"month":"07"},{"date_published":"2023-07-31T00:00:00Z","article_type":"original","citation":{"ista":"Vardi O, Maroudas-Sklare N, Kolodny Y, Volosniev A, Saragovi A, Galili N, Ferrera S, Ghazaryan A, Yuran N, Affek HP, Luz B, Goldsmith Y, Keren N, Yochelis S, Halevy I, Lemeshko M, Paltiel Y. 2023. Nuclear spin effects in biological processes. Proceedings of the National Academy of Sciences of the United States of America. 120(32), e2300828120.","ieee":"O. Vardi et al., “Nuclear spin effects in biological processes,” Proceedings of the National Academy of Sciences of the United States of America, vol. 120, no. 32. National Academy of Sciences, 2023.","apa":"Vardi, O., Maroudas-Sklare, N., Kolodny, Y., Volosniev, A., Saragovi, A., Galili, N., … Paltiel, Y. (2023). Nuclear spin effects in biological processes. Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences. https://doi.org/10.1073/pnas.2300828120","ama":"Vardi O, Maroudas-Sklare N, Kolodny Y, et al. Nuclear spin effects in biological processes. Proceedings of the National Academy of Sciences of the United States of America. 2023;120(32). doi:10.1073/pnas.2300828120","chicago":"Vardi, Ofek, Naama Maroudas-Sklare, Yuval Kolodny, Artem Volosniev, Amijai Saragovi, Nir Galili, Stav Ferrera, et al. “Nuclear Spin Effects in Biological Processes.” Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences, 2023. https://doi.org/10.1073/pnas.2300828120.","mla":"Vardi, Ofek, et al. “Nuclear Spin Effects in Biological Processes.” Proceedings of the National Academy of Sciences of the United States of America, vol. 120, no. 32, e2300828120, National Academy of Sciences, 2023, doi:10.1073/pnas.2300828120.","short":"O. Vardi, N. Maroudas-Sklare, Y. Kolodny, A. Volosniev, A. Saragovi, N. Galili, S. Ferrera, A. Ghazaryan, N. Yuran, H.P. Affek, B. Luz, Y. Goldsmith, N. Keren, S. Yochelis, I. Halevy, M. Lemeshko, Y. Paltiel, Proceedings of the National Academy of Sciences of the United States of America 120 (2023)."},"publication":"Proceedings of the National Academy of Sciences of the United States of America","has_accepted_license":"1","article_processing_charge":"Yes (in subscription journal)","day":"31","scopus_import":"1","file":[{"relation":"main_file","file_id":"14047","checksum":"a5ed64788a5acef9b9a300a26fa5a177","success":1,"date_created":"2023-08-14T07:43:45Z","date_updated":"2023-08-14T07:43:45Z","access_level":"open_access","file_name":"2023_PNAS_Vardi.pdf","content_type":"application/pdf","file_size":1003092,"creator":"dernst"}],"oa_version":"Published Version","intvolume":" 120","ddc":["530"],"title":"Nuclear spin effects in biological processes","status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"14037","issue":"32","abstract":[{"lang":"eng","text":"Traditionally, nuclear spin is not considered to affect biological processes. Recently, this has changed as isotopic fractionation that deviates from classical mass dependence was reported both in vitro and in vivo. In these cases, the isotopic effect correlates with the nuclear magnetic spin. Here, we show nuclear spin effects using stable oxygen isotopes (16O, 17O, and 18O) in two separate setups: an artificial dioxygen production system and biological aquaporin channels in cells. We observe that oxygen dynamics in chiral environments (in particular its transport) depend on nuclear spin, suggesting future applications for controlled isotope separation to be used, for instance, in NMR. To demonstrate the mechanism behind our findings, we formulate theoretical models based on a nuclear-spin-enhanced switch between electronic spin states. Accounting for the role of nuclear spin in biology can provide insights into the role of quantum effects in living systems and help inspire the development of future biotechnology solutions."}],"type":"journal_article","language":[{"iso":"eng"}],"doi":"10.1073/pnas.2300828120","project":[{"_id":"2688CF98-B435-11E9-9278-68D0E5697425","grant_number":"801770","call_identifier":"H2020","name":"Angulon: physics and applications of a new quasiparticle"}],"quality_controlled":"1","tmp":{"name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","short":"CC BY-NC-ND (4.0)","image":"/images/cc_by_nc_nd.png"},"external_id":{"pmid":["37523549"]},"oa":1,"publication_identifier":{"eissn":["1091-6490"]},"month":"07","volume":120,"date_updated":"2023-10-17T11:45:25Z","date_created":"2023-08-13T22:01:12Z","author":[{"full_name":"Vardi, Ofek","first_name":"Ofek","last_name":"Vardi"},{"first_name":"Naama","last_name":"Maroudas-Sklare","full_name":"Maroudas-Sklare, Naama"},{"full_name":"Kolodny, Yuval","last_name":"Kolodny","first_name":"Yuval"},{"full_name":"Volosniev, Artem","orcid":"0000-0003-0393-5525","id":"37D278BC-F248-11E8-B48F-1D18A9856A87","last_name":"Volosniev","first_name":"Artem"},{"full_name":"Saragovi, Amijai","first_name":"Amijai","last_name":"Saragovi"},{"first_name":"Nir","last_name":"Galili","full_name":"Galili, Nir"},{"first_name":"Stav","last_name":"Ferrera","full_name":"Ferrera, Stav"},{"full_name":"Ghazaryan, Areg","orcid":"0000-0001-9666-3543","id":"4AF46FD6-F248-11E8-B48F-1D18A9856A87","last_name":"Ghazaryan","first_name":"Areg"},{"last_name":"Yuran","first_name":"Nir","full_name":"Yuran, Nir"},{"full_name":"Affek, Hagit P.","last_name":"Affek","first_name":"Hagit P."},{"first_name":"Boaz","last_name":"Luz","full_name":"Luz, Boaz"},{"full_name":"Goldsmith, Yonaton","last_name":"Goldsmith","first_name":"Yonaton"},{"full_name":"Keren, Nir","first_name":"Nir","last_name":"Keren"},{"first_name":"Shira","last_name":"Yochelis","full_name":"Yochelis, Shira"},{"first_name":"Itay","last_name":"Halevy","full_name":"Halevy, Itay"},{"last_name":"Lemeshko","first_name":"Mikhail","orcid":"0000-0002-6990-7802","id":"37CB05FA-F248-11E8-B48F-1D18A9856A87","full_name":"Lemeshko, Mikhail"},{"full_name":"Paltiel, Yossi","last_name":"Paltiel","first_name":"Yossi"}],"department":[{"_id":"MiLe"}],"publisher":"National Academy of Sciences","publication_status":"published","pmid":1,"acknowledgement":"N.M.-S. acknowledges the support of the Ministry of Energy, Israel, as part of the scholarship program for graduate students in the fields of energy. M.L. acknowledges support by the European Research Council (ERC) Starting Grant No. 801770 (ANGULON). Y.P. acknowledges the support of the Ministry of Innovation, Science and Technology, Israel Grant No. 1001593872. Y.P acknowledges the support of the BSF-NSF 094 Grant No. 2022503.","year":"2023","ec_funded":1,"file_date_updated":"2023-08-14T07:43:45Z","article_number":"e2300828120"},{"publication_identifier":{"eissn":["1083-589X"]},"month":"02","doi":"10.1214/23-ECP516","language":[{"iso":"eng"}],"external_id":{"isi":["000950650200005"],"arxiv":["2108.13694"]},"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"project":[{"_id":"260C2330-B435-11E9-9278-68D0E5697425","grant_number":"754411","call_identifier":"H2020","name":"ISTplus - Postdoctoral Fellowships"},{"call_identifier":"H2020","name":"Random matrices beyond Wigner-Dyson-Mehta","grant_number":"101020331","_id":"62796744-2b32-11ec-9570-940b20777f1d"}],"quality_controlled":"1","isi":1,"ec_funded":1,"file_date_updated":"2023-02-27T09:43:27Z","author":[{"first_name":"Guillaume","last_name":"Dubach","id":"D5C6A458-10C4-11EA-ABF4-A4B43DDC885E","orcid":"0000-0001-6892-8137","full_name":"Dubach, Guillaume"},{"last_name":"Erdös","first_name":"László","orcid":"0000-0001-5366-9603","id":"4DBD5372-F248-11E8-B48F-1D18A9856A87","full_name":"Erdös, László"}],"volume":28,"date_created":"2023-02-26T23:01:01Z","date_updated":"2023-10-17T12:48:10Z","year":"2023","acknowledgement":"G. Dubach gratefully acknowledges funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 754411. L. Erdős is supported by ERC Advanced Grant “RMTBeyond” No. 101020331.","publisher":"Institute of Mathematical Statistics","department":[{"_id":"LaEr"}],"publication_status":"published","article_processing_charge":"No","has_accepted_license":"1","day":"08","scopus_import":"1","date_published":"2023-02-08T00:00:00Z","citation":{"mla":"Dubach, Guillaume, and László Erdös. “Dynamics of a Rank-One Perturbation of a Hermitian Matrix.” Electronic Communications in Probability, vol. 28, Institute of Mathematical Statistics, 2023, pp. 1–13, doi:10.1214/23-ECP516.","short":"G. Dubach, L. Erdös, Electronic Communications in Probability 28 (2023) 1–13.","chicago":"Dubach, Guillaume, and László Erdös. “Dynamics of a Rank-One Perturbation of a Hermitian Matrix.” Electronic Communications in Probability. Institute of Mathematical Statistics, 2023. https://doi.org/10.1214/23-ECP516.","ama":"Dubach G, Erdös L. Dynamics of a rank-one perturbation of a Hermitian matrix. Electronic Communications in Probability. 2023;28:1-13. doi:10.1214/23-ECP516","ista":"Dubach G, Erdös L. 2023. Dynamics of a rank-one perturbation of a Hermitian matrix. Electronic Communications in Probability. 28, 1–13.","ieee":"G. Dubach and L. Erdös, “Dynamics of a rank-one perturbation of a Hermitian matrix,” Electronic Communications in Probability, vol. 28. Institute of Mathematical Statistics, pp. 1–13, 2023.","apa":"Dubach, G., & Erdös, L. (2023). Dynamics of a rank-one perturbation of a Hermitian matrix. Electronic Communications in Probability. Institute of Mathematical Statistics. https://doi.org/10.1214/23-ECP516"},"publication":"Electronic Communications in Probability","page":"1-13","article_type":"original","abstract":[{"lang":"eng","text":"We study the eigenvalue trajectories of a time dependent matrix Gt=H+itvv∗ for t≥0, where H is an N×N Hermitian random matrix and v is a unit vector. In particular, we establish that with high probability, an outlier can be distinguished at all times t>1+N−1/3+ϵ, for any ϵ>0. The study of this natural process combines elements of Hermitian and non-Hermitian analysis, and illustrates some aspects of the intrinsic instability of (even weakly) non-Hermitian matrices."}],"type":"journal_article","file":[{"file_name":"2023_ElectCommProbability_Dubach.pdf","access_level":"open_access","content_type":"application/pdf","file_size":479105,"creator":"dernst","relation":"main_file","file_id":"12692","date_updated":"2023-02-27T09:43:27Z","date_created":"2023-02-27T09:43:27Z","checksum":"a1c6f0a3e33688fd71309c86a9aad86e","success":1}],"oa_version":"Published Version","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"12683","intvolume":" 28","ddc":["510"],"status":"public","title":"Dynamics of a rank-one perturbation of a Hermitian matrix"},{"ec_funded":1,"author":[{"id":"42198EFA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4901-7992","first_name":"Giorgio","last_name":"Cipolloni","full_name":"Cipolloni, Giorgio"},{"id":"4DBD5372-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5366-9603","first_name":"László","last_name":"Erdös","full_name":"Erdös, László"},{"full_name":"Schröder, Dominik J","last_name":"Schröder","first_name":"Dominik J","orcid":"0000-0002-2904-1856","id":"408ED176-F248-11E8-B48F-1D18A9856A87"}],"volume":33,"date_created":"2023-03-26T22:01:08Z","date_updated":"2023-10-17T12:48:52Z","acknowledgement":"The second author is partially funded by the ERC Advanced Grant “RMTBEYOND” No. 101020331. The third author is supported by Dr. Max Rössler, the Walter Haefner Foundation and the ETH Zürich Foundation.","year":"2023","publisher":"Institute of Mathematical Statistics","department":[{"_id":"LaEr"}],"publication_status":"published","publication_identifier":{"issn":["1050-5164"]},"month":"02","doi":"10.1214/22-AAP1820","language":[{"iso":"eng"}],"oa":1,"external_id":{"isi":["000946432400015"],"arxiv":["2012.13218"]},"main_file_link":[{"url":"https://arxiv.org/abs/2012.13218","open_access":"1"}],"project":[{"grant_number":"101020331","_id":"62796744-2b32-11ec-9570-940b20777f1d","name":"Random matrices beyond Wigner-Dyson-Mehta","call_identifier":"H2020"}],"isi":1,"quality_controlled":"1","issue":"1","abstract":[{"lang":"eng","text":"We consider the fluctuations of regular functions f of a Wigner matrix W viewed as an entire matrix f (W). Going beyond the well-studied tracial mode, Trf (W), which is equivalent to the customary linear statistics of eigenvalues, we show that Trf (W)A is asymptotically normal for any nontrivial bounded deterministic matrix A. We identify three different and asymptotically independent modes of this fluctuation, corresponding to the tracial part, the traceless diagonal part and the off-diagonal part of f (W) in the entire mesoscopic regime, where we find that the off-diagonal modes fluctuate on a much smaller scale than the tracial mode. As a main motivation to study CLT in such generality on small mesoscopic scales, we determine\r\nthe fluctuations in the eigenstate thermalization hypothesis (Phys. Rev. A 43 (1991) 2046–2049), that is, prove that the eigenfunction overlaps with any deterministic matrix are asymptotically Gaussian after a small spectral averaging. Finally, in the macroscopic regime our result also generalizes (Zh. Mat. Fiz. Anal. Geom. 9 (2013) 536–581, 611, 615) to complex W and to all crossover ensembles in between. The main technical inputs are the recent\r\nmultiresolvent local laws with traceless deterministic matrices from the companion paper (Comm. Math. Phys. 388 (2021) 1005–1048)."}],"type":"journal_article","oa_version":"Preprint","_id":"12761","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","intvolume":" 33","status":"public","title":"Functional central limit theorems for Wigner matrices","article_processing_charge":"No","day":"01","scopus_import":"1","date_published":"2023-02-01T00:00:00Z","citation":{"apa":"Cipolloni, G., Erdös, L., & Schröder, D. J. (2023). Functional central limit theorems for Wigner matrices. Annals of Applied Probability. Institute of Mathematical Statistics. https://doi.org/10.1214/22-AAP1820","ieee":"G. Cipolloni, L. Erdös, and D. J. Schröder, “Functional central limit theorems for Wigner matrices,” Annals of Applied Probability, vol. 33, no. 1. Institute of Mathematical Statistics, pp. 447–489, 2023.","ista":"Cipolloni G, Erdös L, Schröder DJ. 2023. Functional central limit theorems for Wigner matrices. Annals of Applied Probability. 33(1), 447–489.","ama":"Cipolloni G, Erdös L, Schröder DJ. Functional central limit theorems for Wigner matrices. Annals of Applied Probability. 2023;33(1):447-489. doi:10.1214/22-AAP1820","chicago":"Cipolloni, Giorgio, László Erdös, and Dominik J Schröder. “Functional Central Limit Theorems for Wigner Matrices.” Annals of Applied Probability. Institute of Mathematical Statistics, 2023. https://doi.org/10.1214/22-AAP1820.","short":"G. Cipolloni, L. Erdös, D.J. Schröder, Annals of Applied Probability 33 (2023) 447–489.","mla":"Cipolloni, Giorgio, et al. “Functional Central Limit Theorems for Wigner Matrices.” Annals of Applied Probability, vol. 33, no. 1, Institute of Mathematical Statistics, 2023, pp. 447–89, doi:10.1214/22-AAP1820."},"publication":"Annals of Applied Probability","page":"447-489","article_type":"original"},{"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/2006.02356"}],"external_id":{"arxiv":["2006.02356"],"isi":["000966611000003"]},"oa":1,"quality_controlled":"1","isi":1,"doi":"10.4007/annals.2023.197.3.3","language":[{"iso":"eng"}],"month":"05","publication_identifier":{"issn":["0003-486X"]},"year":"2023","publication_status":"published","department":[{"_id":"TiBr"}],"publisher":"Princeton University","author":[{"orcid":"0000-0002-8314-0177","id":"35827D50-F248-11E8-B48F-1D18A9856A87","last_name":"Browning","first_name":"Timothy D","full_name":"Browning, Timothy D"},{"last_name":"Boudec","first_name":"Pierre Le","full_name":"Boudec, Pierre Le"},{"last_name":"Sawin","first_name":"Will","full_name":"Sawin, Will"}],"related_material":{"link":[{"url":"https://ist.ac.at/en/news/when-is-necessary-sufficient/","description":"News on IST Homepage","relation":"press_release"}]},"date_updated":"2023-10-17T12:47:43Z","date_created":"2020-10-19T14:28:50Z","volume":197,"publication":"Annals of Mathematics","citation":{"ista":"Browning TD, Boudec PL, Sawin W. 2023. The Hasse principle for random Fano hypersurfaces. Annals of Mathematics. 197(3), 1115–1203.","ieee":"T. D. Browning, P. L. Boudec, and W. Sawin, “The Hasse principle for random Fano hypersurfaces,” Annals of Mathematics, vol. 197, no. 3. Princeton University, pp. 1115–1203, 2023.","apa":"Browning, T. D., Boudec, P. L., & Sawin, W. (2023). The Hasse principle for random Fano hypersurfaces. Annals of Mathematics. Princeton University. https://doi.org/10.4007/annals.2023.197.3.3","ama":"Browning TD, Boudec PL, Sawin W. The Hasse principle for random Fano hypersurfaces. Annals of Mathematics. 2023;197(3):1115-1203. doi:10.4007/annals.2023.197.3.3","chicago":"Browning, Timothy D, Pierre Le Boudec, and Will Sawin. “The Hasse Principle for Random Fano Hypersurfaces.” Annals of Mathematics. Princeton University, 2023. https://doi.org/10.4007/annals.2023.197.3.3.","mla":"Browning, Timothy D., et al. “The Hasse Principle for Random Fano Hypersurfaces.” Annals of Mathematics, vol. 197, no. 3, Princeton University, 2023, pp. 1115–203, doi:10.4007/annals.2023.197.3.3.","short":"T.D. Browning, P.L. Boudec, W. Sawin, Annals of Mathematics 197 (2023) 1115–1203."},"article_type":"original","page":"1115-1203","date_published":"2023-05-01T00:00:00Z","day":"01","article_processing_charge":"No","_id":"8682","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","title":"The Hasse principle for random Fano hypersurfaces","intvolume":" 197","oa_version":"Preprint","type":"journal_article","abstract":[{"text":"It is known that the Brauer--Manin obstruction to the Hasse principle is vacuous for smooth Fano hypersurfaces of dimension at least 3 over any number field. Moreover, for such varieties it follows from a general conjecture of Colliot-Thélène that the Brauer--Manin obstruction to the Hasse principle should be the only one, so that the Hasse principle is expected to hold. Working over the field of rational numbers and ordering Fano hypersurfaces of fixed degree and dimension by height, we prove that almost every such hypersurface satisfies the Hasse principle provided that the dimension is at least 3. This proves a conjecture of Poonen and Voloch in every case except for cubic surfaces.","lang":"eng"}],"issue":"3"},{"file_date_updated":"2023-03-07T10:26:45Z","department":[{"_id":"KrCh"}],"publisher":"Public Library of Science","publication_status":"published","pmid":1,"year":"2023","acknowledgement":"This research was supported by an Australian Government Research Training Program\r\n(RTP) Scholarship to JCM (https://www.dese.gov.au), and LB is supported by the Centre de\r\nrecherche sur le vieillissement Fellowship Program. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.","volume":18,"date_created":"2023-03-05T23:01:05Z","date_updated":"2023-10-17T12:53:30Z","author":[{"full_name":"Mckerral, Jody C.","first_name":"Jody C.","last_name":"Mckerral"},{"full_name":"Kleshnina, Maria","id":"4E21749C-F248-11E8-B48F-1D18A9856A87","first_name":"Maria","last_name":"Kleshnina"},{"first_name":"Vladimir","last_name":"Ejov","full_name":"Ejov, Vladimir"},{"last_name":"Bartle","first_name":"Louise","full_name":"Bartle, Louise"},{"first_name":"James G.","last_name":"Mitchell","full_name":"Mitchell, James G."},{"full_name":"Filar, Jerzy A.","first_name":"Jerzy A.","last_name":"Filar"}],"publication_identifier":{"eissn":["1932-6203"]},"month":"02","isi":1,"quality_controlled":"1","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"pmid":["36848357"],"isi":["000996122900022"]},"oa":1,"language":[{"iso":"eng"}],"doi":"10.1371/journal.pone.0279838","type":"journal_article","issue":"2","abstract":[{"lang":"eng","text":"Allometric settings of population dynamics models are appealing due to their parsimonious nature and broad utility when studying system level effects. Here, we parameterise the size-scaled Rosenzweig-MacArthur differential equations to eliminate prey-mass dependency, facilitating an in depth analytic study of the equations which incorporates scaling parameters’ contributions to coexistence. We define the functional response term to match empirical findings, and examine situations where metabolic theory derivations and observation diverge. The dynamical properties of the Rosenzweig-MacArthur system, encompassing the distribution of size-abundance equilibria, the scaling of period and amplitude of population cycling, and relationships between predator and prey abundances, are consistent with empirical observation. Our parameterisation is an accurate minimal model across 15+ orders of mass magnitude."}],"intvolume":" 18","title":"Empirical parameterisation and dynamical analysis of the allometric Rosenzweig-MacArthur equations","status":"public","ddc":["000"],"_id":"12706","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file":[{"file_size":1257003,"content_type":"application/pdf","creator":"cchlebak","file_name":"2023_PLOSOne_Mckerral.pdf","access_level":"open_access","date_created":"2023-03-07T10:26:45Z","date_updated":"2023-03-07T10:26:45Z","checksum":"798ed5739a4117b03173e5d56e0534c9","success":1,"relation":"main_file","file_id":"12712"}],"oa_version":"Published Version","scopus_import":"1","article_processing_charge":"No","has_accepted_license":"1","day":"27","page":"e0279838","article_type":"original","citation":{"ama":"Mckerral JC, Kleshnina M, Ejov V, Bartle L, Mitchell JG, Filar JA. Empirical parameterisation and dynamical analysis of the allometric Rosenzweig-MacArthur equations. PLoS One. 2023;18(2):e0279838. doi:10.1371/journal.pone.0279838","ista":"Mckerral JC, Kleshnina M, Ejov V, Bartle L, Mitchell JG, Filar JA. 2023. Empirical parameterisation and dynamical analysis of the allometric Rosenzweig-MacArthur equations. PLoS One. 18(2), e0279838.","ieee":"J. C. Mckerral, M. Kleshnina, V. Ejov, L. Bartle, J. G. Mitchell, and J. A. Filar, “Empirical parameterisation and dynamical analysis of the allometric Rosenzweig-MacArthur equations,” PLoS One, vol. 18, no. 2. Public Library of Science, p. e0279838, 2023.","apa":"Mckerral, J. C., Kleshnina, M., Ejov, V., Bartle, L., Mitchell, J. G., & Filar, J. A. (2023). Empirical parameterisation and dynamical analysis of the allometric Rosenzweig-MacArthur equations. PLoS One. Public Library of Science. https://doi.org/10.1371/journal.pone.0279838","mla":"Mckerral, Jody C., et al. “Empirical Parameterisation and Dynamical Analysis of the Allometric Rosenzweig-MacArthur Equations.” PLoS One, vol. 18, no. 2, Public Library of Science, 2023, p. e0279838, doi:10.1371/journal.pone.0279838.","short":"J.C. Mckerral, M. Kleshnina, V. Ejov, L. Bartle, J.G. Mitchell, J.A. Filar, PLoS One 18 (2023) e0279838.","chicago":"Mckerral, Jody C., Maria Kleshnina, Vladimir Ejov, Louise Bartle, James G. Mitchell, and Jerzy A. Filar. “Empirical Parameterisation and Dynamical Analysis of the Allometric Rosenzweig-MacArthur Equations.” PLoS One. Public Library of Science, 2023. https://doi.org/10.1371/journal.pone.0279838."},"publication":"PLoS One","date_published":"2023-02-27T00:00:00Z"},{"oa_version":"Published Version","file":[{"relation":"main_file","file_id":"13205","date_updated":"2023-07-10T09:04:58Z","date_created":"2023-07-10T09:04:58Z","checksum":"70b2141870e0bf1c94fd343e18fdbc32","success":1,"file_name":"2023_JN_Eguchi.pdf","access_level":"open_access","content_type":"application/pdf","file_size":7794425,"creator":"alisjak"}],"title":"Nanoscale phosphoinositide distribution on cell membranes of mouse cerebellar neurons","ddc":["570"],"status":"public","intvolume":" 43","_id":"13202","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","abstract":[{"text":"Phosphatidylinositol-4,5-bisphosphate (PI(4,5)P2) plays an essential role in neuronal activities through interaction with various proteins involved in signaling at membranes. However, the distribution pattern of PI(4,5)P2 and the association with these proteins on the neuronal cell membranes remain elusive. In this study, we established a method for visualizing PI(4,5)P2 by SDS-digested freeze-fracture replica labeling (SDS-FRL) to investigate the quantitative nanoscale distribution of PI(4,5)P2 in cryo-fixed brain. We demonstrate that PI(4,5)P2 forms tiny clusters with a mean size of ∼1000 nm2 rather than randomly distributed in cerebellar neuronal membranes in male C57BL/6J mice. These clusters show preferential accumulation in specific membrane compartments of different cell types, in particular, in Purkinje cell (PC) spines and granule cell (GC) presynaptic active zones. Furthermore, we revealed extensive association of PI(4,5)P2 with CaV2.1 and GIRK3 across different membrane compartments, whereas its association with mGluR1α was compartment specific. These results suggest that our SDS-FRL method provides valuable insights into the physiological functions of PI(4,5)P2 in neurons.","lang":"eng"}],"issue":"23","type":"journal_article","date_published":"2023-06-07T00:00:00Z","article_type":"original","page":"4197-4216","publication":"The Journal of Neuroscience","citation":{"ista":"Eguchi K, Le Monnier E, Shigemoto R. 2023. Nanoscale phosphoinositide distribution on cell membranes of mouse cerebellar neurons. The Journal of Neuroscience. 43(23), 4197–4216.","ieee":"K. Eguchi, E. Le Monnier, and R. Shigemoto, “Nanoscale phosphoinositide distribution on cell membranes of mouse cerebellar neurons,” The Journal of Neuroscience, vol. 43, no. 23. Society for Neuroscience, pp. 4197–4216, 2023.","apa":"Eguchi, K., Le Monnier, E., & Shigemoto, R. (2023). Nanoscale phosphoinositide distribution on cell membranes of mouse cerebellar neurons. The Journal of Neuroscience. Society for Neuroscience. https://doi.org/10.1523/JNEUROSCI.1514-22.2023","ama":"Eguchi K, Le Monnier E, Shigemoto R. Nanoscale phosphoinositide distribution on cell membranes of mouse cerebellar neurons. The Journal of Neuroscience. 2023;43(23):4197-4216. doi:10.1523/JNEUROSCI.1514-22.2023","chicago":"Eguchi, Kohgaku, Elodie Le Monnier, and Ryuichi Shigemoto. “Nanoscale Phosphoinositide Distribution on Cell Membranes of Mouse Cerebellar Neurons.” The Journal of Neuroscience. Society for Neuroscience, 2023. https://doi.org/10.1523/JNEUROSCI.1514-22.2023.","mla":"Eguchi, Kohgaku, et al. “Nanoscale Phosphoinositide Distribution on Cell Membranes of Mouse Cerebellar Neurons.” The Journal of Neuroscience, vol. 43, no. 23, Society for Neuroscience, 2023, pp. 4197–216, doi:10.1523/JNEUROSCI.1514-22.2023.","short":"K. Eguchi, E. Le Monnier, R. Shigemoto, The Journal of Neuroscience 43 (2023) 4197–4216."},"day":"07","has_accepted_license":"1","article_processing_charge":"No","scopus_import":"1","date_created":"2023-07-09T22:01:12Z","date_updated":"2023-10-18T07:12:47Z","volume":43,"author":[{"id":"2B7846DC-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6170-2546","first_name":"Kohgaku","last_name":"Eguchi","full_name":"Eguchi, Kohgaku"},{"id":"3B59276A-F248-11E8-B48F-1D18A9856A87","last_name":"Le Monnier","first_name":"Elodie","full_name":"Le Monnier, Elodie"},{"id":"499F3ABC-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8761-9444","first_name":"Ryuichi","last_name":"Shigemoto","full_name":"Shigemoto, Ryuichi"}],"publication_status":"published","publisher":"Society for Neuroscience","department":[{"_id":"RySh"}],"acknowledgement":"This work was supported by The Institute of Science and Technology (IST) Austria, the European Union's Horizon 2020 Research and Innovation Program under the Marie Skłodowska-Curie Grant Agreement No. 793482 (to K.E.) and by the European Research Council (ERC) Grant Agreement No. 694539 (to R.S.). We thank Nicoleta Condruz (IST Austria, Klosterneuburg, Austria) for technical assistance with sample preparation, the Electron Microscopy Facility of IST Austria (Klosterneuburg, Austria) for technical support with EM works, Natalia Baranova (University of Vienna, Vienna, Austria) and Martin Loose (IST Austria, Klosterneuburg, Austria) for advice on liposome preparation, and Yugo Fukazawa (University of Fukui, Fukui, Japan) for comments.","year":"2023","pmid":1,"file_date_updated":"2023-07-10T09:04:58Z","ec_funded":1,"acknowledged_ssus":[{"_id":"EM-Fac"}],"language":[{"iso":"eng"}],"doi":"10.1523/JNEUROSCI.1514-22.2023","quality_controlled":"1","isi":1,"project":[{"name":"Ultrastructural analysis of phosphoinositides in nerve terminals: distribution, dynamics and physiological roles in synaptic transmission","call_identifier":"H2020","_id":"2659CC84-B435-11E9-9278-68D0E5697425","grant_number":"793482"},{"call_identifier":"H2020","name":"In situ analysis of single channel subunit composition in neurons: physiological implication in synaptic plasticity and behaviour","_id":"25CA28EA-B435-11E9-9278-68D0E5697425","grant_number":"694539"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"pmid":["37160366"],"isi":["001020132100005"]},"oa":1,"month":"06","publication_identifier":{"issn":["0270-6474"],"eissn":["1529-2401"]}},{"_id":"12916","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","title":"Uniform bounds for rational points on hyperelliptic fibrations","intvolume":" 24","oa_version":"Preprint","type":"journal_article","abstract":[{"lang":"eng","text":"We apply a variant of the square-sieve to produce an upper bound for the number of rational points of bounded height on a family of surfaces that admit a fibration over P1 whose general fibre is a hyperelliptic curve. The implied constant does not depend on the coefficients of the polynomial defining the surface.\r\n"}],"issue":"1","publication":"Annali della Scuola Normale Superiore di Pisa - Classe di Scienze","citation":{"ama":"Bonolis D, Browning TD. Uniform bounds for rational points on hyperelliptic fibrations. Annali della Scuola Normale Superiore di Pisa - Classe di Scienze. 2023;24(1):173-204. doi:10.2422/2036-2145.202010_018","apa":"Bonolis, D., & Browning, T. D. (2023). Uniform bounds for rational points on hyperelliptic fibrations. Annali Della Scuola Normale Superiore Di Pisa - Classe Di Scienze. Scuola Normale Superiore - Edizioni della Normale. https://doi.org/10.2422/2036-2145.202010_018","ieee":"D. Bonolis and T. D. Browning, “Uniform bounds for rational points on hyperelliptic fibrations,” Annali della Scuola Normale Superiore di Pisa - Classe di Scienze, vol. 24, no. 1. Scuola Normale Superiore - Edizioni della Normale, pp. 173–204, 2023.","ista":"Bonolis D, Browning TD. 2023. Uniform bounds for rational points on hyperelliptic fibrations. Annali della Scuola Normale Superiore di Pisa - Classe di Scienze. 24(1), 173–204.","short":"D. Bonolis, T.D. Browning, Annali Della Scuola Normale Superiore Di Pisa - Classe Di Scienze 24 (2023) 173–204.","mla":"Bonolis, Dante, and Timothy D. Browning. “Uniform Bounds for Rational Points on Hyperelliptic Fibrations.” Annali Della Scuola Normale Superiore Di Pisa - Classe Di Scienze, vol. 24, no. 1, Scuola Normale Superiore - Edizioni della Normale, 2023, pp. 173–204, doi:10.2422/2036-2145.202010_018.","chicago":"Bonolis, Dante, and Timothy D Browning. “Uniform Bounds for Rational Points on Hyperelliptic Fibrations.” Annali Della Scuola Normale Superiore Di Pisa - Classe Di Scienze. Scuola Normale Superiore - Edizioni della Normale, 2023. https://doi.org/10.2422/2036-2145.202010_018."},"article_type":"original","page":"173-204","date_published":"2023-02-16T00:00:00Z","scopus_import":"1","day":"16","article_processing_charge":"No","year":"2023","publication_status":"published","publisher":"Scuola Normale Superiore - Edizioni della Normale","department":[{"_id":"TiBr"}],"author":[{"id":"6A459894-5FDD-11E9-AF35-BB24E6697425","last_name":"Bonolis","first_name":"Dante","full_name":"Bonolis, Dante"},{"full_name":"Browning, Timothy D","id":"35827D50-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8314-0177","first_name":"Timothy D","last_name":"Browning"}],"date_created":"2023-05-07T22:01:04Z","date_updated":"2023-10-18T06:54:30Z","volume":24,"main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2007.14182"}],"external_id":{"arxiv":["2007.14182"]},"oa":1,"quality_controlled":"1","doi":"10.2422/2036-2145.202010_018","language":[{"iso":"eng"}],"month":"02","publication_identifier":{"issn":["0391-173X"],"eissn":["2036-2145"]}},{"has_accepted_license":"1","article_processing_charge":"No","day":"12","date_published":"2023-10-12T00:00:00Z","citation":{"apa":"Confavreux, B. J. (2023). Synapseek: Meta-learning synaptic plasticity rules. Institute of Science and Technology Austria. https://doi.org/10.15479/at:ista:14422","ieee":"B. J. Confavreux, “Synapseek: Meta-learning synaptic plasticity rules,” Institute of Science and Technology Austria, 2023.","ista":"Confavreux BJ. 2023. Synapseek: Meta-learning synaptic plasticity rules. Institute of Science and Technology Austria.","ama":"Confavreux BJ. Synapseek: Meta-learning synaptic plasticity rules. 2023. doi:10.15479/at:ista:14422","chicago":"Confavreux, Basile J. “Synapseek: Meta-Learning Synaptic Plasticity Rules.” Institute of Science and Technology Austria, 2023. https://doi.org/10.15479/at:ista:14422.","short":"B.J. Confavreux, Synapseek: Meta-Learning Synaptic Plasticity Rules, Institute of Science and Technology Austria, 2023.","mla":"Confavreux, Basile J. Synapseek: Meta-Learning Synaptic Plasticity Rules. Institute of Science and Technology Austria, 2023, doi:10.15479/at:ista:14422."},"page":"148","abstract":[{"text":"Animals exhibit a remarkable ability to learn and remember new behaviors, skills, and associations throughout their lifetime. These capabilities are made possible thanks to a variety of\r\nchanges in the brain throughout adulthood, regrouped under the term \"plasticity\". Some cells\r\nin the brain —neurons— and specifically changes in the connections between neurons, the\r\nsynapses, were shown to be crucial for the formation, selection, and consolidation of memories\r\nfrom past experiences. These ongoing changes of synapses across time are called synaptic\r\nplasticity. Understanding how a myriad of biochemical processes operating at individual\r\nsynapses can somehow work in concert to give rise to meaningful changes in behavior is a\r\nfascinating problem and an active area of research.\r\nHowever, the experimental search for the precise plasticity mechanisms at play in the brain\r\nis daunting, as it is difficult to control and observe synapses during learning. Theoretical\r\napproaches have thus been the default method to probe the plasticity-behavior connection. Such\r\nstudies attempt to extract unifying principles across synapses and model all observed synaptic\r\nchanges using plasticity rules: equations that govern the evolution of synaptic strengths across\r\ntime in neuronal network models. These rules can use many relevant quantities to determine\r\nthe magnitude of synaptic changes, such as the precise timings of pre- and postsynaptic\r\naction potentials, the recent neuronal activity levels, the state of neighboring synapses, etc.\r\nHowever, analytical studies rely heavily on human intuition and are forced to make simplifying\r\nassumptions about plasticity rules.\r\nIn this thesis, we aim to assist and augment human intuition in this search for plasticity rules.\r\nWe explore whether a numerical approach could automatically discover the plasticity rules\r\nthat elicit desired behaviors in large networks of interconnected neurons. This approach is\r\ndubbed meta-learning synaptic plasticity: learning plasticity rules which themselves will make\r\nneuronal networks learn how to solve a desired task. We first write all the potential plasticity\r\nmechanisms to consider using a single expression with adjustable parameters. We then optimize\r\nthese plasticity parameters using evolutionary strategies or Bayesian inference on tasks known\r\nto involve synaptic plasticity, such as familiarity detection and network stabilization.\r\nWe show that these automated approaches are powerful tools, able to complement established\r\nanalytical methods. By comprehensively screening plasticity rules at all synapse types in\r\nrealistic, spiking neuronal network models, we discover entire sets of degenerate plausible\r\nplasticity rules that reliably elicit memory-related behaviors. Our approaches allow for more\r\nrobust experimental predictions, by abstracting out the idiosyncrasies of individual plasticity\r\nrules, and provide fresh insights on synaptic plasticity in spiking network models.\r\n","lang":"eng"}],"type":"dissertation","alternative_title":["ISTA Thesis"],"oa_version":"Published Version","file":[{"checksum":"7f636555eae7803323df287672fd13ed","date_updated":"2023-10-12T14:54:52Z","date_created":"2023-10-12T14:53:50Z","file_id":"14424","embargo":"2024-10-12","relation":"main_file","creator":"cchlebak","file_size":30599717,"content_type":"application/pdf","access_level":"closed","file_name":"Confavreux_Thesis_2A.pdf","embargo_to":"open_access"},{"checksum":"725e85946db92290a4583a0de9779e1b","date_updated":"2023-10-18T07:56:08Z","date_created":"2023-10-18T07:38:34Z","relation":"source_file","file_id":"14440","content_type":"application/x-zip-compressed","file_size":68406739,"creator":"cchlebak","access_level":"closed","file_name":"Confavreux Thesis.zip"}],"_id":"14422","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","title":"Synapseek: Meta-learning synaptic plasticity rules","ddc":["610"],"status":"public","publication_identifier":{"issn":["2663 - 337X"]},"month":"10","doi":"10.15479/at:ista:14422","language":[{"iso":"eng"}],"degree_awarded":"PhD","supervisor":[{"full_name":"Vogels, Tim P","first_name":"Tim P","last_name":"Vogels","id":"CB6FF8D2-008F-11EA-8E08-2637E6697425","orcid":"0000-0003-3295-6181"}],"tmp":{"name":"Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode","image":"/images/cc_by_nc_sa.png","short":"CC BY-NC-SA (4.0)"},"project":[{"_id":"0aacfa84-070f-11eb-9043-d7eb2c709234","grant_number":"819603","name":"Learning the shape of synaptic plasticity rules for neuronal architectures and function through machine learning.","call_identifier":"H2020"}],"ec_funded":1,"file_date_updated":"2023-10-18T07:56:08Z","related_material":{"record":[{"id":"9633","relation":"part_of_dissertation","status":"public"}]},"author":[{"last_name":"Confavreux","first_name":"Basile J","id":"C7610134-B532-11EA-BD9F-F5753DDC885E","full_name":"Confavreux, Basile J"}],"date_updated":"2023-10-18T09:20:56Z","date_created":"2023-10-12T14:13:25Z","year":"2023","department":[{"_id":"GradSch"},{"_id":"TiVo"}],"publisher":"Institute of Science and Technology Austria","publication_status":"published"},{"status":"public","ddc":["515","539"],"title":"Boundary superconductivity in BCS theory","_id":"14374","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","file":[{"file_id":"14398","relation":"main_file","checksum":"ef039ffc3de2cb8dee5b14110938e9b6","date_updated":"2023-10-06T11:35:56Z","date_created":"2023-10-06T11:35:56Z","access_level":"open_access","file_name":"phd-thesis-draft_pdfa_acrobat.pdf","creator":"broos","content_type":"application/pdf","file_size":2365702},{"file_id":"14399","relation":"source_file","checksum":"81dcac33daeefaf0111db52f41bb1fd0","date_updated":"2023-10-06T11:38:01Z","date_created":"2023-10-06T11:38:01Z","access_level":"closed","file_name":"Version5.zip","creator":"broos","content_type":"application/x-zip-compressed","file_size":4691734}],"oa_version":"Published Version","alternative_title":["ISTA Thesis"],"type":"dissertation","abstract":[{"text":"Superconductivity has many important applications ranging from levitating trains over qubits to MRI scanners. The phenomenon is successfully modeled by Bardeen-Cooper-Schrieffer (BCS) theory. From a mathematical perspective, BCS theory has been studied extensively for systems without boundary. However, little is known in the presence of boundaries. With the help of numerical methods physicists observed that the critical temperature may increase in the presence of a boundary. The goal of this thesis is to understand the influence of boundaries on the critical temperature in BCS theory and to give a first rigorous justification of these observations. On the way, we also study two-body Schrödinger operators on domains with boundaries and prove additional results for superconductors without boundary.\r\n\r\nBCS theory is based on a non-linear functional, where the minimizer indicates whether the system is superconducting or in the normal, non-superconducting state. By considering the Hessian of the BCS functional at the normal state, one can analyze whether the normal state is possibly a minimum of the BCS functional and estimate the critical temperature. The Hessian turns out to be a linear operator resembling a Schrödinger operator for two interacting particles, but with more complicated kinetic energy. As a first step, we study the two-body Schrödinger operator in the presence of boundaries.\r\nFor Neumann boundary conditions, we prove that the addition of a boundary can create new eigenvalues, which correspond to the two particles forming a bound state close to the boundary.\r\n\r\nSecond, we need to understand superconductivity in the translation invariant setting. While in three dimensions this has been extensively studied, there is no mathematical literature for the one and two dimensional cases. In dimensions one and two, we compute the weak coupling asymptotics of the critical temperature and the energy gap in the translation invariant setting. We also prove that their ratio is independent of the microscopic details of the model in the weak coupling limit; this property is referred to as universality.\r\n\r\nIn the third part, we study the critical temperature of superconductors in the presence of boundaries. We start by considering the one-dimensional case of a half-line with contact interaction. Then, we generalize the results to generic interactions and half-spaces in one, two and three dimensions. Finally, we compare the critical temperature of a quarter space in two dimensions to the critical temperatures of a half-space and of the full space.","lang":"eng"}],"page":"206","citation":{"short":"B. Roos, Boundary Superconductivity in BCS Theory, Institute of Science and Technology Austria, 2023.","mla":"Roos, Barbara. Boundary Superconductivity in BCS Theory. Institute of Science and Technology Austria, 2023, doi:10.15479/at:ista:14374.","chicago":"Roos, Barbara. “Boundary Superconductivity in BCS Theory.” Institute of Science and Technology Austria, 2023. https://doi.org/10.15479/at:ista:14374.","ama":"Roos B. Boundary superconductivity in BCS theory. 2023. doi:10.15479/at:ista:14374","apa":"Roos, B. (2023). Boundary superconductivity in BCS theory. Institute of Science and Technology Austria. https://doi.org/10.15479/at:ista:14374","ieee":"B. Roos, “Boundary superconductivity in BCS theory,” Institute of Science and Technology Austria, 2023.","ista":"Roos B. 2023. Boundary superconductivity in BCS theory. Institute of Science and Technology Austria."},"date_published":"2023-09-30T00:00:00Z","day":"30","has_accepted_license":"1","article_processing_charge":"No","publication_status":"published","publisher":"Institute of Science and Technology Austria","department":[{"_id":"GradSch"},{"_id":"RoSe"}],"year":"2023","date_created":"2023-09-28T14:23:04Z","date_updated":"2023-10-27T10:37:30Z","author":[{"full_name":"Roos, Barbara","orcid":"0000-0002-9071-5880","id":"5DA90512-D80F-11E9-8994-2E2EE6697425","last_name":"Roos","first_name":"Barbara"}],"related_material":{"record":[{"status":"public","relation":"part_of_dissertation","id":"13207"},{"id":"10850","relation":"part_of_dissertation","status":"public"}]},"file_date_updated":"2023-10-06T11:38:01Z","ec_funded":1,"project":[{"grant_number":"694227","_id":"25C6DC12-B435-11E9-9278-68D0E5697425","name":"Analysis of quantum many-body systems","call_identifier":"H2020"},{"name":"Mathematical Challenges in BCS Theory of Superconductivity","_id":"bda63fe5-d553-11ed-ba76-a16e3d2f256b","grant_number":"I06427"}],"tmp":{"name":"Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode","image":"/images/cc_by_nc_sa.png","short":"CC BY-NC-SA (4.0)"},"oa":1,"supervisor":[{"last_name":"Seiringer","first_name":"Robert","orcid":"0000-0002-6781-0521","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87","full_name":"Seiringer, Robert"}],"degree_awarded":"PhD","language":[{"iso":"eng"}],"doi":"10.15479/at:ista:14374","month":"09","publication_identifier":{"issn":["2663 - 337X"]}},{"publication_identifier":{"eissn":["1664-0403"],"issn":["1664-039X"]},"month":"05","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"arxiv":["2201.08090"],"isi":["000997933500008"]},"oa":1,"project":[{"call_identifier":"H2020","name":"Analysis of quantum many-body systems","grant_number":"694227","_id":"25C6DC12-B435-11E9-9278-68D0E5697425"}],"quality_controlled":"1","isi":1,"doi":"10.4171/JST/439","language":[{"iso":"eng"}],"ec_funded":1,"file_date_updated":"2023-07-11T08:19:15Z","acknowledgement":"We thank Egor Babaev for encouraging us to study this problem, and Rupert Frank for many fruitful discussions. scussions. Funding. Funding from the European Union’s Horizon 2020 research and innovation programme under the ERC grant agreement No. 694227 (Barbara Roos and Robert Seiringer) is gratefully acknowledged.","year":"2023","department":[{"_id":"GradSch"},{"_id":"RoSe"}],"publisher":"EMS Press","publication_status":"published","related_material":{"record":[{"id":"14374","status":"public","relation":"dissertation_contains"}]},"author":[{"full_name":"Hainzl, Christian","first_name":"Christian","last_name":"Hainzl"},{"first_name":"Barbara","last_name":"Roos","id":"5DA90512-D80F-11E9-8994-2E2EE6697425","orcid":"0000-0002-9071-5880","full_name":"Roos, Barbara"},{"full_name":"Seiringer, Robert","last_name":"Seiringer","first_name":"Robert","orcid":"0000-0002-6781-0521","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87"}],"volume":12,"date_created":"2023-07-10T16:35:45Z","date_updated":"2023-10-27T10:37:29Z","has_accepted_license":"1","article_processing_charge":"No","day":"18","citation":{"ama":"Hainzl C, Roos B, Seiringer R. Boundary superconductivity in the BCS model. Journal of Spectral Theory. 2023;12(4):1507–1540. doi:10.4171/JST/439","ista":"Hainzl C, Roos B, Seiringer R. 2023. Boundary superconductivity in the BCS model. Journal of Spectral Theory. 12(4), 1507–1540.","ieee":"C. Hainzl, B. Roos, and R. Seiringer, “Boundary superconductivity in the BCS model,” Journal of Spectral Theory, vol. 12, no. 4. EMS Press, pp. 1507–1540, 2023.","apa":"Hainzl, C., Roos, B., & Seiringer, R. (2023). Boundary superconductivity in the BCS model. Journal of Spectral Theory. EMS Press. https://doi.org/10.4171/JST/439","mla":"Hainzl, Christian, et al. “Boundary Superconductivity in the BCS Model.” Journal of Spectral Theory, vol. 12, no. 4, EMS Press, 2023, pp. 1507–1540, doi:10.4171/JST/439.","short":"C. Hainzl, B. Roos, R. Seiringer, Journal of Spectral Theory 12 (2023) 1507–1540.","chicago":"Hainzl, Christian, Barbara Roos, and Robert Seiringer. “Boundary Superconductivity in the BCS Model.” Journal of Spectral Theory. EMS Press, 2023. https://doi.org/10.4171/JST/439."},"publication":"Journal of Spectral Theory","page":"1507–1540","article_type":"original","date_published":"2023-05-18T00:00:00Z","type":"journal_article","issue":"4","abstract":[{"text":"We consider the linear BCS equation, determining the BCS critical temperature, in the presence of a boundary, where Dirichlet boundary conditions are imposed. In the one-dimensional case with point interactions, we prove that the critical temperature is strictly larger than the bulk value, at least at weak coupling. In particular, the Cooper-pair wave function localizes near the boundary, an effect that cannot be modeled by effective Neumann boundary conditions on the order parameter as often imposed in Ginzburg–Landau theory. We also show that the relative shift in critical temperature vanishes if the coupling constant either goes to zero or to infinity.","lang":"eng"}],"_id":"13207","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","intvolume":" 12","ddc":["530"],"title":"Boundary superconductivity in the BCS model","status":"public","file":[{"file_name":"2023_EMS_Hainzl.pdf","access_level":"open_access","file_size":304619,"content_type":"application/pdf","creator":"alisjak","relation":"main_file","file_id":"13208","date_created":"2023-07-11T08:19:15Z","date_updated":"2023-07-11T08:19:15Z","checksum":"5501da33be010b5c81440438287584d5","success":1}],"oa_version":"Published Version"},{"day":"01","has_accepted_license":"1","article_processing_charge":"Yes (in subscription journal)","scopus_import":"1","date_published":"2023-10-01T00:00:00Z","publication":"Genetics","citation":{"chicago":"Barton, Nicholas H, Alison M. Etheridge, and Amandine Véber. “The Infinitesimal Model with Dominance.” Genetics. Oxford Academic, 2023. https://doi.org/10.1093/genetics/iyad133.","short":"N.H. Barton, A.M. Etheridge, A. Véber, Genetics 225 (2023).","mla":"Barton, Nicholas H., et al. “The Infinitesimal Model with Dominance.” Genetics, vol. 225, no. 2, iyad133, Oxford Academic, 2023, doi:10.1093/genetics/iyad133.","ieee":"N. H. Barton, A. M. Etheridge, and A. Véber, “The infinitesimal model with dominance,” Genetics, vol. 225, no. 2. Oxford Academic, 2023.","apa":"Barton, N. H., Etheridge, A. M., & Véber, A. (2023). The infinitesimal model with dominance. Genetics. Oxford Academic. https://doi.org/10.1093/genetics/iyad133","ista":"Barton NH, Etheridge AM, Véber A. 2023. The infinitesimal model with dominance. Genetics. 225(2), iyad133.","ama":"Barton NH, Etheridge AM, Véber A. The infinitesimal model with dominance. 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We define the model in terms of classical quantities of quantitative genetics, before justifying it as a limit of Mendelian inheritance as the number, M, of underlying loci tends to infinity. As in the additive case, the multivariate normal distribution of trait values across the pedigree can be expressed in terms of variance components in an ancestral population and probabilities of identity by descent determined by the pedigree. Now, with just first-order dominance effects, we require two-, three-, and four-way identities. We also show that, even if we condition on parental trait values, the “shared” and “residual” components of trait values within each family will be asymptotically normally distributed as the number of loci tends to infinity, with an error of order 1/M−−√. 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AV was partly supported by the chaire Modélisation Mathématique et Biodiversité of Veolia Environment—Ecole Polytechnique—Museum National d’Histoire Naturelle—Fondation X.","publication_status":"published","department":[{"_id":"NiBa"}],"publisher":"Oxford Academic"},{"date_published":"2023-05-13T00:00:00Z","doi":"10.15479/AT:ISTA:12949","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"citation":{"ama":"Barton NH. The infinitesimal model with dominance. 2023. doi:10.15479/AT:ISTA:12949","ista":"Barton NH. 2023. The infinitesimal model with dominance, Institute of Science and Technology Austria, 10.15479/AT:ISTA:12949.","ieee":"N. H. Barton, “The infinitesimal model with dominance.” Institute of Science and Technology Austria, 2023.","apa":"Barton, N. H. (2023). The infinitesimal model with dominance. 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In this model, a quantitative trait is expressed as the sum of a genetic and a non-genetic (environmental) component and the genetic component of offspring traits within a family follows a normal distribution around the average of the parents’ trait values, and has a variance that is independent of the trait values of the parents. Although the trait distribution across the whole population can be far from normal, the trait distributions within families are normally distributed with a variance-covariance matrix that is determined entirely by that in the ancestral population and the probabilities of identity determined by the pedigree. Moreover, conditioning on some of the trait values within the pedigree has predictable effects on the mean and variance within and between families. In previous work, Barton et al. (2017), we showed that when trait values are determined by the sum of a large number of Mendelian factors, each of small effect, one can justify the infinitesimal model as limit of Mendelian inheritance. It was also shown that under some forms of epistasis, trait values within a family are still normally distributed.","lang":"eng"}],"file_date_updated":"2023-05-16T04:09:08Z","type":"research_data"}]