[{"quality_controlled":"1","OA_type":"hybrid","isi":1,"project":[{"call_identifier":"H2020","_id":"62796744-2b32-11ec-9570-940b20777f1d","name":"Random matrices beyond Wigner-Dyson-Mehta","grant_number":"101020331"}],"oa":1,"_id":"20328","OA_place":"publisher","oa_version":"Published Version","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"issue":"1","type":"journal_article","volume":290,"arxiv":1,"month":"01","acknowledgement":"Partially supported by ERC Advanced Grant “RMTBeyond” No. 101020331. Partially supported by National Key R&D Program of China No. 2024YFA1013503.","publication_status":"published","doi":"10.1016/j.jfa.2025.111180","file":[{"date_created":"2026-01-05T13:05:47Z","date_updated":"2026-01-05T13:05:47Z","relation":"main_file","creator":"dernst","checksum":"ee53d5e695f0df11e017c8c9242a2b04","file_id":"20947","access_level":"open_access","file_size":2503887,"success":1,"file_name":"2026_JourFuncAnalysis_Cipolloni.pdf","content_type":"application/pdf"}],"article_number":"111180","author":[{"full_name":"Cipolloni, Giorgio","orcid":"0000-0002-4901-7992","first_name":"Giorgio","last_name":"Cipolloni","id":"42198EFA-F248-11E8-B48F-1D18A9856A87"},{"id":"4DBD5372-F248-11E8-B48F-1D18A9856A87","last_name":"Erdös","first_name":"László","orcid":"0000-0001-5366-9603","full_name":"Erdös, László"},{"id":"7902bdb1-a2a4-11eb-a164-c9216f71aea3","last_name":"Xu","orcid":"0000-0003-1559-1205","full_name":"Xu, Yuanyuan","first_name":"Yuanyuan"}],"corr_author":"1","year":"2026","status":"public","external_id":{"isi":["001583178200001"],"arxiv":["2411.16572"]},"PlanS_conform":"1","citation":{"apa":"Cipolloni, G., Erdös, L., &#38; Xu, Y. (2026). Optimal decay of eigenvector overlap for non-Hermitian random matrices. <i>Journal of Functional Analysis</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.jfa.2025.111180\">https://doi.org/10.1016/j.jfa.2025.111180</a>","ista":"Cipolloni G, Erdös L, Xu Y. 2026. Optimal decay of eigenvector overlap for non-Hermitian random matrices. Journal of Functional Analysis. 290(1), 111180.","ieee":"G. Cipolloni, L. Erdös, and Y. Xu, “Optimal decay of eigenvector overlap for non-Hermitian random matrices,” <i>Journal of Functional Analysis</i>, vol. 290, no. 1. Elsevier, 2026.","ama":"Cipolloni G, Erdös L, Xu Y. Optimal decay of eigenvector overlap for non-Hermitian random matrices. <i>Journal of Functional Analysis</i>. 2026;290(1). doi:<a href=\"https://doi.org/10.1016/j.jfa.2025.111180\">10.1016/j.jfa.2025.111180</a>","mla":"Cipolloni, Giorgio, et al. “Optimal Decay of Eigenvector Overlap for Non-Hermitian Random Matrices.” <i>Journal of Functional Analysis</i>, vol. 290, no. 1, 111180, Elsevier, 2026, doi:<a href=\"https://doi.org/10.1016/j.jfa.2025.111180\">10.1016/j.jfa.2025.111180</a>.","chicago":"Cipolloni, Giorgio, László Erdös, and Yuanyuan Xu. “Optimal Decay of Eigenvector Overlap for Non-Hermitian Random Matrices.” <i>Journal of Functional Analysis</i>. Elsevier, 2026. <a href=\"https://doi.org/10.1016/j.jfa.2025.111180\">https://doi.org/10.1016/j.jfa.2025.111180</a>.","short":"G. Cipolloni, L. Erdös, Y. Xu, Journal of Functional Analysis 290 (2026)."},"publisher":"Elsevier","has_accepted_license":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_type":"original","scopus_import":"1","article_processing_charge":"Yes (via OA deal)","file_date_updated":"2026-01-05T13:05:47Z","date_updated":"2026-01-05T13:05:52Z","publication_identifier":{"issn":["0022-1236"]},"intvolume":"       290","title":"Optimal decay of eigenvector overlap for non-Hermitian random matrices","ec_funded":1,"language":[{"iso":"eng"}],"license":"https://creativecommons.org/licenses/by/4.0/","department":[{"_id":"LaEr"}],"publication":"Journal of Functional Analysis","day":"01","abstract":[{"text":"We consider the standard overlap (math formular) of any bi-orthogonal family of left and right eigenvectors of a large random matrix X with centred i.i.d. entries and we prove that it decays as an inverse second power of the distance between the corresponding eigenvalues. This extends similar results for the complex Gaussian ensemble from Bourgade and Dubach [15], as well as Benaych-Georges and Zeitouni [13], to any i.i.d. matrix ensemble in both symmetry classes. As a main tool, we prove a two-resolvent local law for the Hermitisation of X uniformly in the spectrum with optimal decay rate and optimal dependence on the density near the spectral edge.","lang":"eng"}],"date_created":"2025-09-10T05:46:07Z","date_published":"2026-01-01T00:00:00Z","ddc":["510"]},{"date_created":"2025-10-05T22:01:34Z","abstract":[{"text":"We show that if n is odd and p>=Clog n/n, then with high probability Hamilton cycles in G(n,p) span its cycle space. More generally, we show this holds for a class of graphs satisfying certain natural pseudorandom properties. The proof is based on a novel idea of parity-switchers, which can be thought of as analogues of absorbers in the context of cycle spaces. As another application of our method, we show that Hamilton cycles in a near-Dirac graph G, that is, a graph G with odd n vertices and minimum degree n/2+C for sufficiently large constant C, span its cycle space.\r\n","lang":"eng"}],"ddc":["510"],"date_published":"2026-01-01T00:00:00Z","day":"01","department":[{"_id":"MaKw"}],"publication":"Journal of Combinatorial Theory Series B","language":[{"iso":"eng"}],"intvolume":"       176","title":"The Hamilton space of pseudorandom graphs","ec_funded":1,"article_processing_charge":"Yes (via OA deal)","scopus_import":"1","article_type":"original","publication_identifier":{"issn":["0095-8956"],"eissn":["1096-0902"]},"file_date_updated":"2026-01-05T13:29:34Z","date_updated":"2026-01-05T13:29:52Z","has_accepted_license":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","PlanS_conform":"1","citation":{"chicago":"Christoph, Micha, Rajko Nenadov, and Kalina H Petrova. “The Hamilton Space of Pseudorandom Graphs.” <i>Journal of Combinatorial Theory Series B</i>. Elsevier, 2026. <a href=\"https://doi.org/10.1016/j.jctb.2025.09.002\">https://doi.org/10.1016/j.jctb.2025.09.002</a>.","short":"M. Christoph, R. Nenadov, K.H. Petrova, Journal of Combinatorial Theory Series B 176 (2026) 254–267.","mla":"Christoph, Micha, et al. “The Hamilton Space of Pseudorandom Graphs.” <i>Journal of Combinatorial Theory Series B</i>, vol. 176, Elsevier, 2026, pp. 254–67, doi:<a href=\"https://doi.org/10.1016/j.jctb.2025.09.002\">10.1016/j.jctb.2025.09.002</a>.","ieee":"M. Christoph, R. Nenadov, and K. H. Petrova, “The Hamilton space of pseudorandom graphs,” <i>Journal of Combinatorial Theory Series B</i>, vol. 176. Elsevier, pp. 254–267, 2026.","ama":"Christoph M, Nenadov R, Petrova KH. The Hamilton space of pseudorandom graphs. <i>Journal of Combinatorial Theory Series B</i>. 2026;176:254-267. doi:<a href=\"https://doi.org/10.1016/j.jctb.2025.09.002\">10.1016/j.jctb.2025.09.002</a>","ista":"Christoph M, Nenadov R, Petrova KH. 2026. The Hamilton space of pseudorandom graphs. Journal of Combinatorial Theory Series B. 176, 254–267.","apa":"Christoph, M., Nenadov, R., &#38; Petrova, K. H. (2026). The Hamilton space of pseudorandom graphs. <i>Journal of Combinatorial Theory Series B</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.jctb.2025.09.002\">https://doi.org/10.1016/j.jctb.2025.09.002</a>"},"publisher":"Elsevier","year":"2026","corr_author":"1","status":"public","external_id":{"isi":["001585783400001"],"arxiv":["2402.01447"]},"file":[{"file_id":"20953","creator":"dernst","checksum":"60676af4af4b3243ba187e7d65440d99","access_level":"open_access","file_size":688924,"content_type":"application/pdf","file_name":"2026_JourCombTheoryB_Christoph.pdf","success":1,"date_created":"2026-01-05T13:29:34Z","relation":"main_file","date_updated":"2026-01-05T13:29:34Z"}],"doi":"10.1016/j.jctb.2025.09.002","author":[{"full_name":"Christoph, Micha","first_name":"Micha","last_name":"Christoph"},{"first_name":"Rajko","full_name":"Nenadov, Rajko","last_name":"Nenadov"},{"last_name":"Petrova","id":"554ff4e4-f325-11ee-b0c4-a10dbd523381","first_name":"Kalina H","full_name":"Petrova, Kalina H"}],"month":"01","type":"journal_article","volume":176,"arxiv":1,"publication_status":"published","acknowledgement":"This project has received funding from the European Union's Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No 101034413. Image 1 Part of this research was conducted while the author was at Department of Computer Science, ETH Zürich, Switzerland. This author was supported by grant no. CRSII5 173721 of the Swiss National Science Foundation.","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"oa_version":"Published Version","OA_place":"publisher","oa":1,"_id":"20422","isi":1,"project":[{"name":"IST-BRIDGE: International postdoctoral program","grant_number":"101034413","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c","call_identifier":"H2020"}],"quality_controlled":"1","page":"254-267","OA_type":"hybrid"},{"date_created":"2025-10-12T22:01:26Z","abstract":[{"lang":"eng","text":"Given a locally finite set A⊆Rd and a coloring χ:A→{0,1,…,s}, we introduce the chromatic Delaunay mosaic of χ, which is a Delaunay mosaic in Rs+d that represents how points of different colors mingle. Our main results are bounds on the size of the chromatic Delaunay mosaic, in which we assume that d and s are constants. For example, if A is finite with n=#A, and the coloring is random, then the chromatic Delaunay mosaic has O(n⌈d/2⌉) cells in expectation. In contrast, for Delone sets and Poisson point processes in Rd, the expected number of cells within a closed ball is only a constant times the number of points in this ball. Furthermore, in R2 all colorings of a dense set of n points have chromatic Delaunay mosaics of size O(n). This encourages the use of chromatic Delaunay mosaics in applications."}],"ddc":["510"],"date_published":"2026-01-01T00:00:00Z","day":"01","department":[{"_id":"HeEd"}],"publication":"Discrete and Computational Geometry","language":[{"iso":"eng"}],"intvolume":"        75","title":"On the size of chromatic Delaunay mosaics","ec_funded":1,"article_processing_charge":"Yes (via OA deal)","article_type":"original","scopus_import":"1","publication_identifier":{"issn":["0179-5376"],"eissn":["1432-0444"]},"file_date_updated":"2026-01-05T13:21:20Z","date_updated":"2026-01-05T13:21:56Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","has_accepted_license":"1","PlanS_conform":"1","citation":{"chicago":"Biswas, Ranita, Sebastiano Cultrera di Montesano, Ondrej Draganov, Herbert Edelsbrunner, and Morteza Saghafian. “On the Size of Chromatic Delaunay Mosaics.” <i>Discrete and Computational Geometry</i>. Springer Nature, 2026. <a href=\"https://doi.org/10.1007/s00454-025-00778-7\">https://doi.org/10.1007/s00454-025-00778-7</a>.","short":"R. Biswas, S. Cultrera di Montesano, O. Draganov, H. Edelsbrunner, M. Saghafian, Discrete and Computational Geometry 75 (2026) 24–47.","mla":"Biswas, Ranita, et al. “On the Size of Chromatic Delaunay Mosaics.” <i>Discrete and Computational Geometry</i>, vol. 75, Springer Nature, 2026, pp. 24–47, doi:<a href=\"https://doi.org/10.1007/s00454-025-00778-7\">10.1007/s00454-025-00778-7</a>.","ieee":"R. Biswas, S. Cultrera di Montesano, O. Draganov, H. Edelsbrunner, and M. Saghafian, “On the size of chromatic Delaunay mosaics,” <i>Discrete and Computational Geometry</i>, vol. 75. Springer Nature, pp. 24–47, 2026.","ama":"Biswas R, Cultrera di Montesano S, Draganov O, Edelsbrunner H, Saghafian M. On the size of chromatic Delaunay mosaics. <i>Discrete and Computational Geometry</i>. 2026;75:24-47. doi:<a href=\"https://doi.org/10.1007/s00454-025-00778-7\">10.1007/s00454-025-00778-7</a>","ista":"Biswas R, Cultrera di Montesano S, Draganov O, Edelsbrunner H, Saghafian M. 2026. On the size of chromatic Delaunay mosaics. Discrete and Computational Geometry. 75, 24–47.","apa":"Biswas, R., Cultrera di Montesano, S., Draganov, O., Edelsbrunner, H., &#38; Saghafian, M. (2026). On the size of chromatic Delaunay mosaics. <i>Discrete and Computational Geometry</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s00454-025-00778-7\">https://doi.org/10.1007/s00454-025-00778-7</a>"},"publisher":"Springer Nature","corr_author":"1","year":"2026","external_id":{"arxiv":["2212.03121"],"isi":["001584166900001"]},"status":"public","file":[{"content_type":"application/pdf","file_name":"2026_DiscreteCompGeom_Biswas.pdf","success":1,"file_size":570922,"access_level":"open_access","checksum":"0addb5c1b78142f9fb453bfa04695400","creator":"dernst","file_id":"20952","relation":"main_file","date_updated":"2026-01-05T13:21:20Z","date_created":"2026-01-05T13:21:20Z"}],"doi":"10.1007/s00454-025-00778-7","author":[{"last_name":"Biswas","id":"3C2B033E-F248-11E8-B48F-1D18A9856A87","full_name":"Biswas, Ranita","orcid":"0000-0002-5372-7890","first_name":"Ranita"},{"first_name":"Sebastiano","orcid":"0000-0001-6249-0832","full_name":"Cultrera di Montesano, Sebastiano","id":"34D2A09C-F248-11E8-B48F-1D18A9856A87","last_name":"Cultrera di Montesano"},{"first_name":"Ondrej","full_name":"Draganov, Ondrej","orcid":"0000-0003-0464-3823","last_name":"Draganov","id":"2B23F01E-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Edelsbrunner, Herbert","orcid":"0000-0002-9823-6833","first_name":"Herbert","last_name":"Edelsbrunner","id":"3FB178DA-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Morteza","full_name":"Saghafian, Morteza","id":"f86f7148-b140-11ec-9577-95435b8df824","last_name":"Saghafian"}],"month":"01","type":"journal_article","volume":75,"arxiv":1,"publication_status":"published","acknowledgement":"The fourth author thanks Boris Aronov for insightful discussions on the size of the overlay of Voronoi tessellations. Open access funding provided by Institute of Science and Technology (IST Austria). This project has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme, grant no. 788183, from the Wittgenstein Prize, Austrian Science Fund (FWF), grant no. Z 342-N31, and from the DFG Collaborative Research Center TRR 109, ‘Discretization in Geometry and Dynamics’, Austrian Science Fund (FWF), grant no. I 02979-N35.","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"oa_version":"Published Version","related_material":{"record":[{"status":"public","id":"15090","relation":"earlier_version"}]},"OA_place":"publisher","_id":"20456","oa":1,"isi":1,"project":[{"call_identifier":"H2020","name":"Alpha Shape Theory Extended","grant_number":"788183","_id":"266A2E9E-B435-11E9-9278-68D0E5697425"},{"_id":"268116B8-B435-11E9-9278-68D0E5697425","grant_number":"Z00342","name":"Mathematics, Computer Science","call_identifier":"FWF"},{"_id":"2561EBF4-B435-11E9-9278-68D0E5697425","grant_number":"I02979-N35","name":"Persistence and stability of geometric complexes","call_identifier":"FWF"}],"quality_controlled":"1","page":"24-47","OA_type":"hybrid"},{"author":[{"last_name":"Boyadzhiyska","first_name":"Simona","full_name":"Boyadzhiyska, Simona"},{"last_name":"Das","full_name":"Das, Shagnik","first_name":"Shagnik"},{"last_name":"Lesgourgues","full_name":"Lesgourgues, Thomas","first_name":"Thomas"},{"first_name":"Kalina H","full_name":"Petrova, Kalina H","id":"554ff4e4-f325-11ee-b0c4-a10dbd523381","last_name":"Petrova"}],"doi":"10.1016/j.ejc.2025.104235","article_number":"104235","file":[{"date_created":"2026-01-05T13:34:40Z","date_updated":"2026-01-05T13:34:40Z","relation":"main_file","file_size":563029,"file_name":"2026_EuropJourCombinatorics_Boyadzhiyska.pdf","success":1,"content_type":"application/pdf","file_id":"20954","creator":"dernst","checksum":"52883daa217398396cbf9b8ad9ddae92","access_level":"open_access"}],"acknowledgement":"The authors would like to thank Gilles Zémor for a helpful clarification on [3], Deepak Bal and Patrick Bennett for bringing [25] to their attention, and both referees for several helpful comments.\r\nS.B.: Most of this research was conducted while the author was at the School of Mathematics, University of Birmingham, Birmingham, United Kingdom. The research leading to these results was supported by EPSRC, United Kingdom, grant no. EP/V048287/1 and by ERC Advanced Grants “GeoScape”, no. 882971 and “ERMiD”, no. 101054936. There are no additional data beyond that contained within the main manuscript.\r\nS.D.: Research supported by Taiwan NSTC grants 111-2115-M-002-009-MY2 and 113-2628-M-002-008-MY4.\r\nK.P.: This project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No 101034413. Parts of this research was conducted while K.P. was at the Department of Computer Science, ETH Zürich, Switzerland, supported by Swiss National Science Foundation, Switzerland , grant no. CRSII5 173721.","publication_status":"published","type":"journal_article","arxiv":1,"volume":131,"month":"01","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"oa_version":"Published Version","OA_place":"publisher","oa":1,"_id":"20482","project":[{"call_identifier":"H2020","name":"IST-BRIDGE: International postdoctoral program","grant_number":"101034413","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c"}],"isi":1,"OA_type":"hybrid","quality_controlled":"1","date_published":"2026-01-01T00:00:00Z","ddc":["500"],"abstract":[{"lang":"eng","text":"In his study of graph codes, Alon introduced the concept of the odd-Ramsey number of a family of graphs H in Kn, defined as the minimum number of colours needed to colour the edges of K so that every copy of a graph H E H intersects some colour class in an odd number of edges. In this paper, we focus on complete bipartite graphs. First, we completely resolve the problem when H is the family of all spanning complete bipartite graphs on n vertices. We then focus on its subfamilies, that is, {Kt,n-t : t E T} for a fixed set of integers T c [[n/2]]. We prove that the odd-Ramsey problem is equivalent to determining the maximum dimension of a linear binary code avoiding codewords of given weights, and leverage known results from coding theory to deduce asymptotically tight bounds in our setting. We conclude with bounds for the odd-Ramsey numbers of fixed (that is, non-spanning) complete bipartite subgraphs."}],"date_created":"2025-10-16T13:14:34Z","department":[{"_id":"MaKw"}],"publication":"European Journal of Combinatorics","day":"01","language":[{"iso":"eng"}],"ec_funded":1,"title":"Odd-Ramsey numbers of complete bipartite graphs","intvolume":"       131","date_updated":"2026-01-05T13:34:48Z","file_date_updated":"2026-01-05T13:34:40Z","publication_identifier":{"issn":["0195-6698"]},"article_type":"original","scopus_import":"1","article_processing_charge":"Yes (via OA deal)","has_accepted_license":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"Elsevier","PlanS_conform":"1","citation":{"ista":"Boyadzhiyska S, Das S, Lesgourgues T, Petrova KH. 2026. Odd-Ramsey numbers of complete bipartite graphs. European Journal of Combinatorics. 131, 104235.","apa":"Boyadzhiyska, S., Das, S., Lesgourgues, T., &#38; Petrova, K. H. (2026). Odd-Ramsey numbers of complete bipartite graphs. <i>European Journal of Combinatorics</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.ejc.2025.104235\">https://doi.org/10.1016/j.ejc.2025.104235</a>","ama":"Boyadzhiyska S, Das S, Lesgourgues T, Petrova KH. Odd-Ramsey numbers of complete bipartite graphs. <i>European Journal of Combinatorics</i>. 2026;131. doi:<a href=\"https://doi.org/10.1016/j.ejc.2025.104235\">10.1016/j.ejc.2025.104235</a>","ieee":"S. Boyadzhiyska, S. Das, T. Lesgourgues, and K. H. Petrova, “Odd-Ramsey numbers of complete bipartite graphs,” <i>European Journal of Combinatorics</i>, vol. 131. Elsevier, 2026.","mla":"Boyadzhiyska, Simona, et al. “Odd-Ramsey Numbers of Complete Bipartite Graphs.” <i>European Journal of Combinatorics</i>, vol. 131, 104235, Elsevier, 2026, doi:<a href=\"https://doi.org/10.1016/j.ejc.2025.104235\">10.1016/j.ejc.2025.104235</a>.","short":"S. Boyadzhiyska, S. Das, T. Lesgourgues, K.H. Petrova, European Journal of Combinatorics 131 (2026).","chicago":"Boyadzhiyska, Simona, Shagnik Das, Thomas Lesgourgues, and Kalina H Petrova. “Odd-Ramsey Numbers of Complete Bipartite Graphs.” <i>European Journal of Combinatorics</i>. Elsevier, 2026. <a href=\"https://doi.org/10.1016/j.ejc.2025.104235\">https://doi.org/10.1016/j.ejc.2025.104235</a>."},"status":"public","external_id":{"arxiv":["2410.05887"],"isi":["001573380700001"]},"year":"2026","corr_author":"1"},{"month":"01","type":"research_data","day":"8","department":[{"_id":"BeVi"}],"date_created":"2025-12-17T10:10:57Z","file":[{"date_created":"2025-12-17T10:09:25Z","relation":"main_file","date_updated":"2025-12-17T10:09:25Z","file_size":1201,"success":1,"file_name":"README.txt","content_type":"text/plain","checksum":"0b79be6229f2ad9ac117ef00fc4f5c0e","creator":"llayanaf","file_id":"20834","access_level":"open_access"},{"file_id":"20835","checksum":"daf1c03149dd170b14e5c8e109ee3c77","creator":"llayanaf","access_level":"open_access","file_size":19052849,"content_type":"application/zip","success":1,"file_name":"Supplementary_Datasets.zip","date_created":"2025-12-17T10:10:11Z","relation":"main_file","date_updated":"2025-12-17T10:10:11Z"},{"content_type":"application/zip","success":1,"file_name":"Perl_scripts.zip","file_size":4575,"access_level":"open_access","file_id":"20837","checksum":"251e7aab01917c2ad2fbccf465492ea1","creator":"llayanaf","date_updated":"2025-12-17T10:12:05Z","relation":"main_file","date_created":"2025-12-17T10:12:05Z"},{"date_created":"2026-01-08T01:35:08Z","relation":"main_file","date_updated":"2026-01-08T01:35:08Z","file_size":572362,"file_name":"Supplementary_Tables.zip","content_type":"application/zip","success":1,"checksum":"3cabf143b8cd286eae48c598da2b03bd","creator":"llayanaf","file_id":"20959","access_level":"open_access"}],"abstract":[{"lang":"eng","text":"Sex-chromosome systems are highly variable across animals, but how they transition from one to another is not well understood. Diptera have undergone multiple sex-chromosome turnovers and expansions while maintaining their general chromosomal content, which makes them an ideal clade to study such transitions. We analysed more than 100 dipteran whole-genome assemblies and identified 4 new lineages that underwent sex-chromosome turnover (in addition to the 5 previously reported). We find the majority of turnovers happened in the group Schizophora, which tend to have fewer genes on the F element (the chromosome homologous to the ancestral insect X chromosome) than lower dipterans, a factor previously hypothesized to facilitate turnover. Most derived X chromosomes have higher GC content than autosomes, consistent with a high prevalence of male-achiasmy in Diptera. In addition, an excess of gene movement out of the X is detected for most of these new X chromosomes, and many of these moved genes have high testis expression in Drosophila, suggesting that out-of-X gene movement contributes to the long-term demasculinization of X chromosomes."}],"doi":"10.15479/AT-ISTA-20833","author":[{"id":"02814589-eb8f-11eb-b029-a70074f3f18f","last_name":"Layana Franco","orcid":"0000-0002-1253-6297","full_name":"Layana Franco, Lorena Alexandra","first_name":"Lorena Alexandra"},{"last_name":"Toups","id":"4E099E4E-F248-11E8-B48F-1D18A9856A87","full_name":"Toups, Melissa A","orcid":"0000-0002-9752-7380","first_name":"Melissa A"},{"full_name":"Vicoso, Beatriz","orcid":"0000-0002-4579-8306","first_name":"Beatriz","last_name":"Vicoso","id":"49E1C5C6-F248-11E8-B48F-1D18A9856A87"}],"date_published":"2026-01-08T00:00:00Z","title":"Research Data for 'Causes and consequences of sex-chromosome turnovers in Diptera'","oa_version":"None","keyword":["Schizophora","sex chromosomes","sex-chromosome turnover","Diptera","genomic features","out-of-X movement."],"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"user_id":"68b8ca59-c5b3-11ee-8790-cd641c68093d","has_accepted_license":"1","oa":1,"_id":"20833","article_processing_charge":"No","date_updated":"2026-01-08T13:49:40Z","file_date_updated":"2026-01-08T01:35:08Z","corr_author":"1","year":"2026","status":"public","citation":{"chicago":"Layana Franco, Lorena Alexandra, Melissa A Toups, and Beatriz Vicoso. “Research Data for ‘Causes and Consequences of Sex-Chromosome Turnovers in Diptera.’” Institute of Science and Technology Austria, 2026. <a href=\"https://doi.org/10.15479/AT-ISTA-20833\">https://doi.org/10.15479/AT-ISTA-20833</a>.","short":"L.A. Layana Franco, M.A. Toups, B. Vicoso, (2026).","mla":"Layana Franco, Lorena Alexandra, et al. <i>Research Data for “Causes and Consequences of Sex-Chromosome Turnovers in Diptera.”</i> Institute of Science and Technology Austria, 2026, doi:<a href=\"https://doi.org/10.15479/AT-ISTA-20833\">10.15479/AT-ISTA-20833</a>.","ieee":"L. A. Layana Franco, M. A. Toups, and B. Vicoso, “Research Data for ‘Causes and consequences of sex-chromosome turnovers in Diptera.’” Institute of Science and Technology Austria, 2026.","ama":"Layana Franco LA, Toups MA, Vicoso B. Research Data for “Causes and consequences of sex-chromosome turnovers in Diptera.” 2026. doi:<a href=\"https://doi.org/10.15479/AT-ISTA-20833\">10.15479/AT-ISTA-20833</a>","apa":"Layana Franco, L. A., Toups, M. A., &#38; Vicoso, B. (2026). Research Data for “Causes and consequences of sex-chromosome turnovers in Diptera.” Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT-ISTA-20833\">https://doi.org/10.15479/AT-ISTA-20833</a>","ista":"Layana Franco LA, Toups MA, Vicoso B. 2026. Research Data for ‘Causes and consequences of sex-chromosome turnovers in Diptera’, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT-ISTA-20833\">10.15479/AT-ISTA-20833</a>."},"publisher":"Institute of Science and Technology Austria"},{"day":"07","publication":"Nature","department":[{"_id":"JaBr"}],"ddc":["570"],"date_published":"2026-01-07T00:00:00Z","date_created":"2026-01-08T07:57:17Z","main_file_link":[{"url":"https://doi.org/10.1038/s41586-025-09852-9","open_access":"1"}],"abstract":[{"text":"In all domains of life, tRNAs mediate the transfer of genetic information from mRNAs to proteins. As their depletion suppresses translation and, consequently, viral replication, tRNAs represent long-standing and increasingly recognized targets of innate immunity1,2,3,4,5. Here we report Cas12a3 effector nucleases from type V CRISPR–Cas adaptive immune systems in bacteria that preferentially cleave tRNAs after recognition of target RNA. Cas12a3 orthologues belong to one of two previously unreported nuclease clades that exhibit RNA-mediated cleavage of non-target RNA, and are distinct from all other known type V systems. Through cell-based and biochemical assays and direct RNA sequencing, we demonstrate that recognition of a complementary target RNA by the CRISPR RNA triggers Cas12a3 to cleave the conserved 5′-CCA-3′ tail of diverse tRNAs to drive growth arrest and anti-phage defence. Cryogenic electron microscopy structures further revealed a distinct tRNA-loading domain that positions the tRNA tail in the RuvC active site of the nuclease. By designing synthetic reporters that mimic the tRNA acceptor stem and tail, we expanded the capacity of current CRISPR-based diagnostics for multiplexed RNA detection. Overall, these findings reveal widespread tRNA inactivation as a previously unrecognized CRISPR-based immune strategy that broadens the application space of the existing CRISPR toolbox.","lang":"eng"}],"title":"RNA-triggered Cas12a3 cleaves tRNA tails to execute bacterial immunity","language":[{"iso":"eng"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","has_accepted_license":"1","publication_identifier":{"issn":["0028-0836"],"eissn":["1476-4687"]},"date_updated":"2026-01-12T10:13:56Z","article_processing_charge":"Yes (via OA deal)","scopus_import":"1","article_type":"original","status":"public","external_id":{"pmid":["41501459"]},"year":"2026","publisher":"Springer Nature","PlanS_conform":"1","citation":{"mla":"Dmytrenko, Oleg, et al. “RNA-Triggered Cas12a3 Cleaves TRNA Tails to Execute Bacterial Immunity.” <i>Nature</i>, Springer Nature, 2026, doi:<a href=\"https://doi.org/10.1038/s41586-025-09852-9\">10.1038/s41586-025-09852-9</a>.","chicago":"Dmytrenko, Oleg, Biao Yuan, Kadin T. Crosby, Max Krebel, Xiye Chen, Jakub S. Nowak, Andrzej Chramiec-Głąbik, et al. “RNA-Triggered Cas12a3 Cleaves TRNA Tails to Execute Bacterial Immunity.” <i>Nature</i>. Springer Nature, 2026. <a href=\"https://doi.org/10.1038/s41586-025-09852-9\">https://doi.org/10.1038/s41586-025-09852-9</a>.","short":"O. Dmytrenko, B. Yuan, K.T. Crosby, M. Krebel, X. Chen, J.S. Nowak, A. Chramiec-Głąbik, B. Filani, A.-S. Gribling-Burrer, W. van der Toorn, M. von Kleist, T. Achmedov, R.P. Smyth, S. Glatt, J.P.K. Bravo, D.W. Heinz, R.N. Jackson, C.L. Beisel, Nature (2026).","apa":"Dmytrenko, O., Yuan, B., Crosby, K. T., Krebel, M., Chen, X., Nowak, J. S., … Beisel, C. L. (2026). RNA-triggered Cas12a3 cleaves tRNA tails to execute bacterial immunity. <i>Nature</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41586-025-09852-9\">https://doi.org/10.1038/s41586-025-09852-9</a>","ista":"Dmytrenko O, Yuan B, Crosby KT, Krebel M, Chen X, Nowak JS, Chramiec-Głąbik A, Filani B, Gribling-Burrer A-S, van der Toorn W, von Kleist M, Achmedov T, Smyth RP, Glatt S, Bravo JPK, Heinz DW, Jackson RN, Beisel CL. 2026. RNA-triggered Cas12a3 cleaves tRNA tails to execute bacterial immunity. Nature.","ieee":"O. Dmytrenko <i>et al.</i>, “RNA-triggered Cas12a3 cleaves tRNA tails to execute bacterial immunity,” <i>Nature</i>. Springer Nature, 2026.","ama":"Dmytrenko O, Yuan B, Crosby KT, et al. RNA-triggered Cas12a3 cleaves tRNA tails to execute bacterial immunity. <i>Nature</i>. 2026. doi:<a href=\"https://doi.org/10.1038/s41586-025-09852-9\">10.1038/s41586-025-09852-9</a>"},"publication_status":"epub_ahead","acknowledgement":"We thank Ł. Koziej for processing of the initial cryo-EM datasets, S. Schmelz for support in cryo-EM, A. Gatzemeier for assistance in the purification of dBa1Cas12a3, R. Rarose for support with the in vitro RNA experiments, M. Kaminski for providing purified PsmCas13b protein, L. Schönemann for protein purification, and C. Krempl and S. Backesfor providing the RSV and influenza A transcript-encoding plasmids. This work was supported through funding by the European Research Council (101001394 to S.G.; 865973 and 101158249 to C.L.B.), the R. Gaurth Hansen Family (to R.N.J.), the National Institutes of Health (R35GM138080 to R.N.J.), the PostDoc Plus Program from the Graduate School of Life Sciences at Julius-Maximilians-Universität Würzburg (to O.D.), and the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany’s Excellence Strategy–The Berlin Mathematics Research Center MATH+ (EXC−2046/1, project ID: 390685689 to M.v.K.). Open access funding provided by Helmholtz-Zentrum für Infektionsforschung GmbH (HZI).","month":"01","type":"journal_article","author":[{"full_name":"Dmytrenko, Oleg","first_name":"Oleg","last_name":"Dmytrenko"},{"last_name":"Yuan","full_name":"Yuan, Biao","first_name":"Biao"},{"last_name":"Crosby","full_name":"Crosby, Kadin T.","first_name":"Kadin T."},{"last_name":"Krebel","first_name":"Max","full_name":"Krebel, Max"},{"last_name":"Chen","full_name":"Chen, Xiye","first_name":"Xiye"},{"last_name":"Nowak","first_name":"Jakub S.","full_name":"Nowak, Jakub S."},{"full_name":"Chramiec-Głąbik, Andrzej","first_name":"Andrzej","last_name":"Chramiec-Głąbik"},{"last_name":"Filani","full_name":"Filani, Bamidele","first_name":"Bamidele"},{"first_name":"Anne-Sophie","full_name":"Gribling-Burrer, Anne-Sophie","last_name":"Gribling-Burrer"},{"full_name":"van der Toorn, Wiep","first_name":"Wiep","last_name":"van der Toorn"},{"full_name":"von Kleist, Max","first_name":"Max","last_name":"von Kleist"},{"last_name":"Achmedov","first_name":"Tatjana","full_name":"Achmedov, Tatjana"},{"first_name":"Redmond P.","full_name":"Smyth, Redmond P.","last_name":"Smyth"},{"last_name":"Glatt","full_name":"Glatt, Sebastian","first_name":"Sebastian"},{"orcid":"0000-0003-0456-0753","full_name":"Bravo, Jack Peter Kelly","first_name":"Jack Peter Kelly","id":"96aecfa5-8931-11ee-af30-aa6a5d6eee0e","last_name":"Bravo"},{"last_name":"Heinz","first_name":"Dirk W.","full_name":"Heinz, Dirk W."},{"last_name":"Jackson","first_name":"Ryan N.","full_name":"Jackson, Ryan N."},{"full_name":"Beisel, Chase L.","first_name":"Chase L.","last_name":"Beisel"}],"doi":"10.1038/s41586-025-09852-9","oa_version":"Published Version","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"oa":1,"_id":"20963","OA_place":"publisher","OA_type":"hybrid","pmid":1,"quality_controlled":"1"},{"status":"public","year":"2026","citation":{"short":"T. Sauter, B.W. Brock, E. Collier, B. Goger, A.R. Groos, K.F. Haualand, R. Mott, L. Nicholson, R. Prinz, T. Shaw, I. Stiperski, A. Georgi, M. Haugeneder, A. Mandal, D. Reynolds, M. Saigger, J.E. Sicart, A. Voordendag, Reviews of Geophysics 64 (2026).","chicago":"Sauter, T., B. W. Brock, E. Collier, B. Goger, A. R. Groos, K. F. Haualand, R. Mott, et al. “Glacier-Atmosphere Interactions and Feedbacks in High-Mountain Regions - A Review.” <i>Reviews of Geophysics</i>, 2026. <a href=\"https://doi.org/10.1029/2024RG000869\">https://doi.org/10.1029/2024RG000869</a>.","mla":"Sauter, T., et al. “Glacier-Atmosphere Interactions and Feedbacks in High-Mountain Regions - A Review.” <i>Reviews of Geophysics</i>, vol. 64, no. 1, e2024RG000869, 2026, doi:<a href=\"https://doi.org/10.1029/2024RG000869\">10.1029/2024RG000869</a>.","ieee":"T. Sauter <i>et al.</i>, “Glacier-atmosphere interactions and feedbacks in high-mountain regions - A review,” <i>Reviews of Geophysics</i>, vol. 64, no. 1. 2026.","ama":"Sauter T, Brock BW, Collier E, et al. Glacier-atmosphere interactions and feedbacks in high-mountain regions - A review. <i>Reviews of Geophysics</i>. 2026;64(1). doi:<a href=\"https://doi.org/10.1029/2024RG000869\">10.1029/2024RG000869</a>","apa":"Sauter, T., Brock, B. W., Collier, E., Goger, B., Groos, A. R., Haualand, K. F., … Voordendag, A. (2026). Glacier-atmosphere interactions and feedbacks in high-mountain regions - A review. <i>Reviews of Geophysics</i>. <a href=\"https://doi.org/10.1029/2024RG000869\">https://doi.org/10.1029/2024RG000869</a>","ista":"Sauter T, Brock BW, Collier E, Goger B, Groos AR, Haualand KF, Mott R, Nicholson L, Prinz R, Shaw T, Stiperski I, Georgi A, Haugeneder M, Mandal A, Reynolds D, Saigger M, Sicart JE, Voordendag A. 2026. Glacier-atmosphere interactions and feedbacks in high-mountain regions - A review. Reviews of Geophysics. 64(1), e2024RG000869."},"PlanS_conform":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","has_accepted_license":"1","date_updated":"2026-01-12T10:04:17Z","publication_identifier":{"eissn":["1944-9208"],"issn":["8755-1209"]},"scopus_import":"1","article_type":"original","article_processing_charge":"Yes (in subscription journal)","ec_funded":1,"intvolume":"        64","title":"Glacier-atmosphere interactions and feedbacks in high-mountain regions - A review","language":[{"iso":"eng"}],"department":[{"_id":"FrPe"}],"publication":"Reviews of Geophysics","day":"05","date_published":"2026-01-05T00:00:00Z","ddc":["550"],"abstract":[{"text":"Mountain glaciers are among the natural systems most vulnerable to climate change. However, their interactions with the atmosphere are complex and not fully understood. These interactions can trigger rapid adjustments and climate feedbacks that either amplify or attenuate atmospheric signals, influencing both glacier response and large-scale atmospheric circulation. Observing this functional coupling in nature is challenging because the key processes occur over a wide range of spatial and temporal scales. However, recent advances in observational techniques and modeling have provided new insights into these interactions. In this review, we summarize the current state of knowledge on glacier-atmosphere interactions in high-mountain regions at different scales, and highlight recent advances in observational and numerical modeling. We also highlight important knowledge gaps and outline future research directions to improve the prediction of glacier change in a warming world.","lang":"eng"}],"main_file_link":[{"url":"https://doi.org/10.1029/2024RG000869","open_access":"1"}],"date_created":"2026-01-11T23:01:33Z","OA_type":"hybrid","project":[{"_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c","grant_number":"101034413","name":"IST-BRIDGE: International postdoctoral program","call_identifier":"H2020"}],"oa":1,"_id":"20971","OA_place":"publisher","oa_version":"Published Version","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"issue":"1","acknowledgement":"This work is the result of collaboration and discussions within HEFEX II, and we are grateful to all colleagues who have contributed to and enriched these discussions in various ways. T. Sauter acknowledges funding from the German Research Foundation (DFG) (Grant 543257843). This research was funded in part by the Austrian Science Fund (FWF) (Grant https://doi.org/10.55776/P36624 and https://doi.org/10.55776/P36306) for which E. Collier and R. Prinz are grateful. A. R. Groos, T. E. Shaw, R. Mott and M. Haugeneder acknowledge Transnational Access from the European Union's H2020 project INTERACT III (Grant 871120) for participation in the HEFEX II campaign and working group. I. Stiperski (Grant Agreement No. 101001691) and A. R. Groos (Grant Agreement No. 948290) acknowledge funding from the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation program. R. Mott acknowledges funding from the Swiss National Science Foundation (SNSF) (Grant 200021_219918). B. Goger is supported by EXCLAIM, a project funded by ETH Zurich. J.E. Sicart acknowledges LabEx OSUG@2020 (Investissements d'avenir - ANR10 LABX56) for participation in the HEFEX II campaign and working group. T. E. Shaw acknowledges funding from the EU Horizon 2020 Marie Skłodowska-Curie Grant 101026058 and 101034413. K. F. Haualand and T. Sauter are supported by the JOSTICE project funded by the Research Council of Norway (RCN Grant 302458).","publication_status":"epub_ahead","volume":64,"type":"journal_article","month":"01","author":[{"full_name":"Sauter, T.","first_name":"T.","last_name":"Sauter"},{"full_name":"Brock, B. W.","first_name":"B. W.","last_name":"Brock"},{"first_name":"E.","full_name":"Collier, E.","last_name":"Collier"},{"full_name":"Goger, B.","first_name":"B.","last_name":"Goger"},{"last_name":"Groos","first_name":"A. R.","full_name":"Groos, A. R."},{"first_name":"K. F.","full_name":"Haualand, K. F.","last_name":"Haualand"},{"first_name":"R.","full_name":"Mott, R.","last_name":"Mott"},{"first_name":"L.","full_name":"Nicholson, L.","last_name":"Nicholson"},{"full_name":"Prinz, R.","first_name":"R.","last_name":"Prinz"},{"id":"3caa3f91-1f03-11ee-96ce-e0e553054d6e","last_name":"Shaw","orcid":"0000-0001-7640-6152","full_name":"Shaw, Thomas","first_name":"Thomas"},{"full_name":"Stiperski, I.","first_name":"I.","last_name":"Stiperski"},{"full_name":"Georgi, A.","first_name":"A.","last_name":"Georgi"},{"full_name":"Haugeneder, M.","first_name":"M.","last_name":"Haugeneder"},{"last_name":"Mandal","first_name":"A.","full_name":"Mandal, A."},{"last_name":"Reynolds","first_name":"D.","full_name":"Reynolds, D."},{"full_name":"Saigger, M.","first_name":"M.","last_name":"Saigger"},{"last_name":"Sicart","full_name":"Sicart, J. E.","first_name":"J. E."},{"first_name":"A.","full_name":"Voordendag, A.","last_name":"Voordendag"}],"doi":"10.1029/2024RG000869","article_number":"e2024RG000869"},{"external_id":{"pmid":["41494523"]},"status":"public","year":"2026","corr_author":"1","publisher":"Elsevier","citation":{"mla":"Kücükdereli, Hakan, and Amelia M. Douglass. “Neuroscience: What Doesn’t Kill You Makes You Stronger.” <i>Current Biology</i>, vol. 36, no. 1, Elsevier, 2026, pp. R27–29, doi:<a href=\"https://doi.org/10.1016/j.cub.2025.11.056\">10.1016/j.cub.2025.11.056</a>.","chicago":"Kücükdereli, Hakan, and Amelia M. Douglass. “Neuroscience: What Doesn’t Kill You Makes You Stronger.” <i>Current Biology</i>. Elsevier, 2026. <a href=\"https://doi.org/10.1016/j.cub.2025.11.056\">https://doi.org/10.1016/j.cub.2025.11.056</a>.","short":"H. Kücükdereli, A.M. Douglass, Current Biology 36 (2026) R27–R29.","apa":"Kücükdereli, H., &#38; Douglass, A. M. (2026). Neuroscience: What doesn’t kill you makes you stronger. <i>Current Biology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.cub.2025.11.056\">https://doi.org/10.1016/j.cub.2025.11.056</a>","ista":"Kücükdereli H, Douglass AM. 2026. Neuroscience: What doesn’t kill you makes you stronger. Current Biology. 36(1), R27–R29.","ieee":"H. Kücükdereli and A. M. Douglass, “Neuroscience: What doesn’t kill you makes you stronger,” <i>Current Biology</i>, vol. 36, no. 1. Elsevier, pp. R27–R29, 2026.","ama":"Kücükdereli H, Douglass AM. Neuroscience: What doesn’t kill you makes you stronger. <i>Current Biology</i>. 2026;36(1):R27-R29. doi:<a href=\"https://doi.org/10.1016/j.cub.2025.11.056\">10.1016/j.cub.2025.11.056</a>"},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_identifier":{"issn":["0960-9822"],"eissn":["1879-0445"]},"date_updated":"2026-01-12T10:09:13Z","article_processing_charge":"No","scopus_import":"1","article_type":"letter_note","title":"Neuroscience: What doesn’t kill you makes you stronger","intvolume":"        36","language":[{"iso":"eng"}],"day":"05","publication":"Current Biology","department":[{"_id":"AmDo"},{"_id":"SiHi"}],"date_published":"2026-01-05T00:00:00Z","date_created":"2026-01-11T23:01:33Z","abstract":[{"text":"Small amounts of stress are thought to have beneficial effects. A new study reports a mechanism by which the psychedelic drug, psilocybin, causes acute release of stress hormones, despite its known long-term anti-anxiety effects.","lang":"eng"}],"OA_type":"closed access","page":"R27-R29","pmid":1,"quality_controlled":"1","_id":"20972","oa_version":"None","issue":"1","month":"01","volume":36,"type":"journal_article","author":[{"last_name":"Kücükdereli","id":"5d5f6ea4-ef9e-11f0-a10a-85e12a3552af","full_name":"Kücükdereli, Hakan","first_name":"Hakan"},{"first_name":"Amelia May Barnett","orcid":"0000-0001-5398-6473","full_name":"Douglass, Amelia May Barnett","id":"de5f6fda-80fb-11ef-996f-a8c4ecd8e289","last_name":"Douglass"}],"doi":"10.1016/j.cub.2025.11.056"},{"_id":"20974","oa":1,"OA_place":"publisher","quality_controlled":"1","OA_type":"gold","arxiv":1,"type":"journal_article","volume":545,"DOAJ_listed":"1","month":"01","acknowledgement":"We acknowledge helpful conversations with the ENIGMA group at UC Santa Barbara and Leiden University. This work is based on observations made with the NASA/ESA/CSA JWST. The data were obtained from the Mikulski Archive for Space Telescopes at the Space Telescope Science Institute, which is operated by the Association of Universities for Research in Astronomy, Inc., under NASA contract NAS 5-03127 for JWST. These observations are associated with programmes #1219 and #1764. This work made use of numpy (C. R. Harris et al. 2020), scipy (P. Virtanen et al. 2020), jax (J. Bradbury et al. 2018), numpyro (E. Bingham et al. 2018; D. Phan, N. Pradhan & M. Jankowiak 2019), sklearn (F. Pedregosa et al. 2011), astropy (Astropy Collaboration 2013, 2018, 2022), PypeIt (J. Prochaska et al. 2020), skycalc_ipy (K. Leschinski 2021), h5py (A. Collette 2013), matplotlib (J. D. Hunter 2007), corner.py (D. Foreman-Mackey 2016), and IPython (F. Pérez & B. E. Granger 2007). TK and JFH acknowledge support from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (grant agreement no. 885301). JFH acknowledges support from NSF grant no. 2307180. SEIB was supported by the Deutsche Forschungsgemeinschaft (DFG) under Emmy Noether grant number BO 5771/1-1. FW acknowledges support from NSF award AST-2513040.","publication_status":"published","doi":"10.1093/mnras/staf2219","file":[{"date_created":"2026-01-12T09:43:07Z","relation":"main_file","date_updated":"2026-01-12T09:43:07Z","file_id":"20979","creator":"dernst","checksum":"68f04ab0fdcee4f12341d116c5f794cd","access_level":"open_access","file_size":2174272,"content_type":"application/pdf","file_name":"2026_MonthNoticesRAS_Kist.pdf","success":1}],"article_number":"staf2219","author":[{"last_name":"Kist","first_name":"Timo","full_name":"Kist, Timo"},{"first_name":"Joseph F.","full_name":"Hennawi, Joseph F.","last_name":"Hennawi"},{"last_name":"Davies","full_name":"Davies, Frederick B.","first_name":"Frederick B."},{"last_name":"Bañados","first_name":"Eduardo","full_name":"Bañados, Eduardo"},{"full_name":"Bosman, Sarah E.I.","first_name":"Sarah E.I.","last_name":"Bosman"},{"last_name":"Cai","first_name":"Zheng","full_name":"Cai, Zheng"},{"last_name":"Eilers","first_name":"Anna Christina","full_name":"Eilers, Anna Christina"},{"last_name":"Fan","first_name":"Xiaohui","full_name":"Fan, Xiaohui"},{"full_name":"Haiman, Zoltán","orcid":"0000-0003-3633-5403","first_name":"Zoltán","last_name":"Haiman","id":"7c006e8c-cc0d-11ee-8322-cb904ef76f36"},{"last_name":"Jun","first_name":"Hyunsung D.","full_name":"Jun, Hyunsung D."},{"last_name":"Liu","first_name":"Yichen","full_name":"Liu, Yichen"},{"full_name":"Yang, Jinyi","first_name":"Jinyi","last_name":"Yang"},{"last_name":"Wang","first_name":"Feige","full_name":"Wang, Feige"}],"oa_version":"Published Version","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"issue":"3","has_accepted_license":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","scopus_import":"1","article_type":"original","article_processing_charge":"Yes","date_updated":"2026-01-12T09:45:54Z","file_date_updated":"2026-01-12T09:43:07Z","publication_identifier":{"eissn":["1365-2966"],"issn":["0035-8711"]},"year":"2026","status":"public","external_id":{"arxiv":["2508.21818"]},"citation":{"chicago":"Kist, Timo, Joseph F. Hennawi, Frederick B. Davies, Eduardo Bañados, Sarah E.I. Bosman, Zheng Cai, Anna Christina Eilers, et al. “First Constraints on the Local Ionization Topology in Front of Two Quasars at z ∼ 7.5.” <i>Monthly Notices of the Royal Astronomical Society</i>. Oxford University Press, 2026. <a href=\"https://doi.org/10.1093/mnras/staf2219\">https://doi.org/10.1093/mnras/staf2219</a>.","short":"T. Kist, J.F. Hennawi, F.B. Davies, E. Bañados, S.E.I. Bosman, Z. Cai, A.C. Eilers, X. Fan, Z. Haiman, H.D. Jun, Y. Liu, J. Yang, F. Wang, Monthly Notices of the Royal Astronomical Society 545 (2026).","mla":"Kist, Timo, et al. “First Constraints on the Local Ionization Topology in Front of Two Quasars at z ∼ 7.5.” <i>Monthly Notices of the Royal Astronomical Society</i>, vol. 545, no. 3, staf2219, Oxford University Press, 2026, doi:<a href=\"https://doi.org/10.1093/mnras/staf2219\">10.1093/mnras/staf2219</a>.","ieee":"T. Kist <i>et al.</i>, “First constraints on the local ionization topology in front of two quasars at z ∼ 7.5,” <i>Monthly Notices of the Royal Astronomical Society</i>, vol. 545, no. 3. Oxford University Press, 2026.","ama":"Kist T, Hennawi JF, Davies FB, et al. First constraints on the local ionization topology in front of two quasars at z ∼ 7.5. <i>Monthly Notices of the Royal Astronomical Society</i>. 2026;545(3). doi:<a href=\"https://doi.org/10.1093/mnras/staf2219\">10.1093/mnras/staf2219</a>","ista":"Kist T, Hennawi JF, Davies FB, Bañados E, Bosman SEI, Cai Z, Eilers AC, Fan X, Haiman Z, Jun HD, Liu Y, Yang J, Wang F. 2026. First constraints on the local ionization topology in front of two quasars at z ∼ 7.5. Monthly Notices of the Royal Astronomical Society. 545(3), staf2219.","apa":"Kist, T., Hennawi, J. F., Davies, F. B., Bañados, E., Bosman, S. E. I., Cai, Z., … Wang, F. (2026). First constraints on the local ionization topology in front of two quasars at z ∼ 7.5. <i>Monthly Notices of the Royal Astronomical Society</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/mnras/staf2219\">https://doi.org/10.1093/mnras/staf2219</a>"},"PlanS_conform":"1","publisher":"Oxford University Press","department":[{"_id":"ZoHa"}],"publication":"Monthly Notices of the Royal Astronomical Society","day":"01","abstract":[{"lang":"eng","text":"Thus far, Lyman-α damping wings towards quasars have been used to probe the global ionization state of the foreground intergalactic medium (IGM). A new parametrization has demonstrated that the damping wing signature also carries local information about the distribution of neutral hydrogen (H I) in front of the quasar before it started shining. Leveraging a recently introduced Bayesian JAX-based Hamiltonian Monte Carlo inference framework, we derive constraints on the Lorentzian-weighted H I column density NDW H I , the quasar’s distance rpatch to the first neutral patch, and its lifetime tQ based on James Webb Space\r\nTelescope (JWST) Near Infrared Spectrograph (NIRSpec) spectra of the two z ∼ 7.5 quasars J1007+2115 and J1342+0928. After folding in model-dependent topology information, we find that J1007+2115 (and J1342+0928) is most likely to reside in a (xH1)= 0.32+0.22 −0.20 (0.58+0.23 −0.23) neutral IGM while shining for a remarkably short lifetime of log10 tQ/yr = 4.14+0.74 −0.18 (an intermediate lifetime of 5.64+0.25 −0.43) along a sightline with log10 NDW\r\nH I /cm−2 = 19.70+0.35 −0.86 (20.24+0.25 −0.22) and rpatch = 28.9+54.0 −14.4 cMpc\r\n(10.9+5.6−5.9 cMpc). In light of the potential presence of local absorbers in the foreground of J1342+0928 as has been recently suggested, we also demonstrate how the Lorentzian-weighted column density NDW H I provides a natural means for quantifying their contribution to the observed damping wing signal."}],"date_created":"2026-01-11T23:01:34Z","date_published":"2026-01-01T00:00:00Z","ddc":["520"],"intvolume":"       545","title":"First constraints on the local ionization topology in front of two quasars at z ∼ 7.5","language":[{"iso":"eng"}]},{"month":"01","type":"journal_article","day":"02","publication_status":"epub_ahead","acknowledgement":"This work has received funding from the Swiss State Secretariat for Education, Research and Innovation (Contract No. MB22.00072). The Cosmic Dawn Center (DAWN) is funded by the Danish National Research Foundation (Grant No. DNRF140). The data products presented herein were retrieved from the DJA, which is an initiative of the Cosmic Dawn Center. This work is based on observations made with the NASA/ESA/CSA JWST. The data were obtained from MAST at the Space Telescope Science Institute, which is operated by the Association of Universities for Research in Astronomy, Inc., under NASA contract NAS 5-03127 for JWST. J.S.B. acknowledges support from the Simons Collaboration on Learning the Universe. J.S.B.’s simulations used resources from the Cambridge Service for Data Driven Discovery operated by the University of Cambridge Research Computing Service (www.csd3.cam.ac.uk), provided by Dell EMC and Intel using tier 2 funding from the Engineering and Physical Sciences Research Council (Capital Grant No. EP/P020259/1). K.F. gratefully acknowledges support from the National Science Foundation (Award No. 2006550). M.J.H. is fellow of the Knut & Alice Wallenberg Foundation. D.S. acknowledges support from the Science and Technology Facilities Council. U.S.K. was partially funded by the Summer Undergraduate Research Fellowships programme at Caltech.","department":[{"_id":"JoMa"}],"publication":"Nature Astronomy","date_created":"2026-01-11T23:01:34Z","doi":"10.1038/s41550-025-02745-x","abstract":[{"text":"Galaxy clusters are the most massive, gravitationally bound structures in the Universe. They emerged through hierarchical structure formation of large-scale dark matter and baryon overdensities. Early galaxy ‘proto-clusters’ are believed to have substantially contributed to the cosmic star-formation rate density and served as ‘hotspots’ for the reionization of the intergalactic medium. Our understanding of the formation of these structures at the earliest cosmic epochs is, however, limited to sparse observations of their galaxy members or is based on phenomenological models and cosmological simulations. Here we report the detection of a large and coherent structure of neutral atomic hydrogen gas (H i) extending from a galaxy proto-cluster at redshift z = 5.4, one billion years after the Big Bang. The presence of this H i gas is revealed by strong damped Lyman-α absorption features observed in several background-galaxy spectra. Although the sight lines overall probe a large range in H i column densities, NHI = 1020 cm−2 to 1023.5 cm−2, they are similar across nearby sight lines, demonstrating that they probe the same dense neutral gas. This observation of a dense large-scale overdensity of cold neutral gas challenges current cosmological simulations and has strong implications for the reionization topology of the Universe.","lang":"eng"}],"author":[{"first_name":"Kasper E.","full_name":"Heintz, Kasper E.","last_name":"Heintz"},{"first_name":"Jake S.","full_name":"Bennett, Jake S.","last_name":"Bennett"},{"first_name":"Pascal A.","full_name":"Oesch, Pascal A.","last_name":"Oesch"},{"last_name":"Sneppen","first_name":"Albert","full_name":"Sneppen, Albert"},{"last_name":"Rennehan","full_name":"Rennehan, Douglas","first_name":"Douglas"},{"first_name":"Clara L.","full_name":"Pollock, Clara L.","last_name":"Pollock"},{"last_name":"Witstok","first_name":"Joris","full_name":"Witstok, Joris"},{"last_name":"Smit","first_name":"Renske","full_name":"Smit, Renske"},{"first_name":"Simone","full_name":"Vejlgaard, Simone","last_name":"Vejlgaard"},{"first_name":"Chamilla","full_name":"Terp, Chamilla","last_name":"Terp"},{"full_name":"Koca, Umran S.","first_name":"Umran S.","last_name":"Koca"},{"full_name":"Brammer, Gabriel B.","first_name":"Gabriel B.","last_name":"Brammer"},{"last_name":"Finlator","full_name":"Finlator, Kristian","first_name":"Kristian"},{"last_name":"Hayes","full_name":"Hayes, Matthew J.","first_name":"Matthew J."},{"last_name":"Sijacki","first_name":"Debora","full_name":"Sijacki, Debora"},{"last_name":"Naidu","first_name":"Rohan P.","full_name":"Naidu, Rohan P."},{"last_name":"Matthee","id":"7439a258-f3c0-11ec-9501-9df22fe06720","first_name":"Jorryt J","full_name":"Matthee, Jorryt J","orcid":"0000-0003-2871-127X"},{"last_name":"Valentino","first_name":"Francesco","full_name":"Valentino, Francesco"},{"last_name":"Tanvir","first_name":"Nial R.","full_name":"Tanvir, Nial R."},{"first_name":"Páll","full_name":"Jakobsson, Páll","last_name":"Jakobsson"},{"last_name":"Laursen","full_name":"Laursen, Peter","first_name":"Peter"},{"last_name":"Watson","full_name":"Watson, Darach J.","first_name":"Darach J."},{"first_name":"Romeel","full_name":"Davé, Romeel","last_name":"Davé"},{"first_name":"Laura C.","full_name":"Keating, Laura C.","last_name":"Keating"},{"first_name":"Alba","full_name":"Covelo-Paz, Alba","last_name":"Covelo-Paz"}],"date_published":"2026-01-02T00:00:00Z","title":"A dense web of neutral gas in a galaxy proto-cluster post-reionization","oa_version":"None","language":[{"iso":"eng"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"20975","article_processing_charge":"No","article_type":"original","scopus_import":"1","publication_identifier":{"eissn":["2397-3366"]},"date_updated":"2026-01-12T09:53:21Z","year":"2026","quality_controlled":"1","OA_type":"closed access","status":"public","citation":{"short":"K.E. Heintz, J.S. Bennett, P.A. Oesch, A. Sneppen, D. Rennehan, C.L. Pollock, J. Witstok, R. Smit, S. Vejlgaard, C. Terp, U.S. Koca, G.B. Brammer, K. Finlator, M.J. Hayes, D. Sijacki, R.P. Naidu, J.J. Matthee, F. Valentino, N.R. Tanvir, P. Jakobsson, P. Laursen, D.J. Watson, R. Davé, L.C. Keating, A. Covelo-Paz, Nature Astronomy (2026).","chicago":"Heintz, Kasper E., Jake S. Bennett, Pascal A. Oesch, Albert Sneppen, Douglas Rennehan, Clara L. Pollock, Joris Witstok, et al. “A Dense Web of Neutral Gas in a Galaxy Proto-Cluster Post-Reionization.” <i>Nature Astronomy</i>. Springer Nature, 2026. <a href=\"https://doi.org/10.1038/s41550-025-02745-x\">https://doi.org/10.1038/s41550-025-02745-x</a>.","mla":"Heintz, Kasper E., et al. “A Dense Web of Neutral Gas in a Galaxy Proto-Cluster Post-Reionization.” <i>Nature Astronomy</i>, Springer Nature, 2026, doi:<a href=\"https://doi.org/10.1038/s41550-025-02745-x\">10.1038/s41550-025-02745-x</a>.","ieee":"K. E. Heintz <i>et al.</i>, “A dense web of neutral gas in a galaxy proto-cluster post-reionization,” <i>Nature Astronomy</i>. Springer Nature, 2026.","ama":"Heintz KE, Bennett JS, Oesch PA, et al. A dense web of neutral gas in a galaxy proto-cluster post-reionization. <i>Nature Astronomy</i>. 2026. doi:<a href=\"https://doi.org/10.1038/s41550-025-02745-x\">10.1038/s41550-025-02745-x</a>","ista":"Heintz KE, Bennett JS, Oesch PA, Sneppen A, Rennehan D, Pollock CL, Witstok J, Smit R, Vejlgaard S, Terp C, Koca US, Brammer GB, Finlator K, Hayes MJ, Sijacki D, Naidu RP, Matthee JJ, Valentino F, Tanvir NR, Jakobsson P, Laursen P, Watson DJ, Davé R, Keating LC, Covelo-Paz A. 2026. A dense web of neutral gas in a galaxy proto-cluster post-reionization. Nature Astronomy.","apa":"Heintz, K. E., Bennett, J. S., Oesch, P. A., Sneppen, A., Rennehan, D., Pollock, C. L., … Covelo-Paz, A. (2026). A dense web of neutral gas in a galaxy proto-cluster post-reionization. <i>Nature Astronomy</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41550-025-02745-x\">https://doi.org/10.1038/s41550-025-02745-x</a>"},"publisher":"Springer Nature"},{"quality_controlled":"1","page":"108-130","OA_type":"green","project":[{"call_identifier":"H2020","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c","grant_number":"101034413","name":"IST-BRIDGE: International postdoctoral program"}],"oa":1,"_id":"20980","OA_place":"repository","oa_version":"Preprint","issue":"1","type":"journal_article","volume":25,"arxiv":1,"month":"01","acknowledgement":"This research was supported by NSF grants DMS-2301360 and CCF-2437030 as well as from the European Union's Horizon 2020 research and innovation programme under Marie Sk\\lodowska-Curie grant 101034413.\r\n","publication_status":"published","doi":"10.1137/25m1739406","author":[{"first_name":"Tamal K.","full_name":"Dey, Tamal K.","last_name":"Dey"},{"last_name":"Haas","full_name":"Haas, Andrew","first_name":"Andrew"},{"id":"dfffb474-4317-11ee-8f5c-fe3fc95a425e","last_name":"Lipiński","orcid":"0000-0001-9789-9750","full_name":"Lipiński, Michał","first_name":"Michał"}],"year":"2026","external_id":{"arxiv":["2502.19369"]},"status":"public","citation":{"chicago":"Dey, Tamal K., Andrew Haas, and Michał Lipiński. “Computing a Connection Matrix and Persistence Efficiently from a Morse Decomposition.” <i>SIAM Journal on Applied Dynamical Systems</i>. Society for Industrial &#38; Applied Mathematics, 2026. <a href=\"https://doi.org/10.1137/25m1739406\">https://doi.org/10.1137/25m1739406</a>.","short":"T.K. Dey, A. Haas, M. Lipiński, SIAM Journal on Applied Dynamical Systems 25 (2026) 108–130.","mla":"Dey, Tamal K., et al. “Computing a Connection Matrix and Persistence Efficiently from a Morse Decomposition.” <i>SIAM Journal on Applied Dynamical Systems</i>, vol. 25, no. 1, Society for Industrial &#38; Applied Mathematics, 2026, pp. 108–30, doi:<a href=\"https://doi.org/10.1137/25m1739406\">10.1137/25m1739406</a>.","ieee":"T. K. Dey, A. Haas, and M. Lipiński, “Computing a connection matrix and persistence efficiently from a morse decomposition,” <i>SIAM Journal on Applied Dynamical Systems</i>, vol. 25, no. 1. Society for Industrial &#38; Applied Mathematics, pp. 108–130, 2026.","ama":"Dey TK, Haas A, Lipiński M. Computing a connection matrix and persistence efficiently from a morse decomposition. <i>SIAM Journal on Applied Dynamical Systems</i>. 2026;25(1):108-130. doi:<a href=\"https://doi.org/10.1137/25m1739406\">10.1137/25m1739406</a>","ista":"Dey TK, Haas A, Lipiński M. 2026. Computing a connection matrix and persistence efficiently from a morse decomposition. SIAM Journal on Applied Dynamical Systems. 25(1), 108–130.","apa":"Dey, T. K., Haas, A., &#38; Lipiński, M. (2026). Computing a connection matrix and persistence efficiently from a morse decomposition. <i>SIAM Journal on Applied Dynamical Systems</i>. Society for Industrial &#38; Applied Mathematics. <a href=\"https://doi.org/10.1137/25m1739406\">https://doi.org/10.1137/25m1739406</a>"},"publisher":"Society for Industrial & Applied Mathematics","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_type":"original","scopus_import":"1","article_processing_charge":"No","date_updated":"2026-01-20T07:40:39Z","publication_identifier":{"issn":["1536-0040"]},"title":"Computing a connection matrix and persistence efficiently from a morse decomposition","intvolume":"        25","ec_funded":1,"language":[{"iso":"eng"}],"publication":"SIAM Journal on Applied Dynamical Systems","department":[{"_id":"HeEd"}],"day":"01","abstract":[{"text":"Morse decompositions partition the flows in a vector field into equivalent structures. Given such a decomposition, one can define a further summary of its flow structure by what is called a connection matrix. These matrices, a generalization of Morse boundary operators from classical Morse theory, capture the connections made by the flows among the critical structures—such as attractors, repellers, and orbits—in a vector field. Recently, in the context of combinatorial dynamics, an efficient persistence-like algorithm to compute connection matrices has been proposed in Dey, Lipiński, Mrozek, and Slechta [SIAM J. Appl. Dyn. Syst., 23 (2024), pp. 81–97]. We show that, actually, the classical persistence algorithm with exhaustive reduction retrieves connection matrices, both simplifying the algorithm of Dey et al. and bringing the theory of persistence closer to combinatorial dynamical systems. We supplement this main result with an observation: the concept of persistence as defined for scalar fields naturally adapts to Morse decompositions whose Morse sets are filtered with a Lyapunov function. We conclude by presenting preliminary experimental results.","lang":"eng"}],"date_created":"2026-01-12T11:17:06Z","main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2502.19369","open_access":"1"}],"date_published":"2026-01-01T00:00:00Z","ddc":["510"]},{"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"oa_version":"Published Version","author":[{"first_name":"Juan Sebastian","full_name":"Calderon Garcia, Juan Sebastian","last_name":"Calderon Garcia","id":"1271b54b-dbcd-11ea-9d1d-d92da838fe2c"},{"last_name":"Costalunga","first_name":"Giacomo","full_name":"Costalunga, Giacomo"},{"id":"CB6FF8D2-008F-11EA-8E08-2637E6697425","last_name":"Vogels","first_name":"Tim P","orcid":"0000-0003-3295-6181","full_name":"Vogels, Tim P"},{"last_name":"Vallentin","full_name":"Vallentin, Daniela","first_name":"Daniela"}],"doi":"10.1016/j.cub.2025.12.025","publication_status":"epub_ahead","acknowledgement":"We would like to thank J. Benichov and N. Hein for their help with fieldwork; M. Ramadas for helping with the segmentation analysis; T. Eliav, C. Chintaluri, G. Tkacik, and A. Navas for providing helpful comments to the project and manuscript; and A. Costalunga for the drawings of nightingales. Funding sources: The Joachim Herz Stiftung Add-on Fellowships for Interdisciplinary Life Science, awarded to G.C.; the ERC Consolidator Grant 819603 SYNAPSEEK, awarded to T.P.V.; and DFG Research Unit 5768–532521431, DFG Research Grant-547921981, DFG SFB 1315–327654276, and the ERC Starting Grant 757459 MIDNIGHT, awarded to D.V.","month":"01","type":"journal_article","project":[{"grant_number":"819603","name":"Learning the shape of synaptic plasticity rules for neuronal architectures and function through machine learning.","_id":"0aacfa84-070f-11eb-9043-d7eb2c709234","call_identifier":"H2020"}],"OA_type":"hybrid","quality_controlled":"1","OA_place":"publisher","_id":"20986","oa":1,"language":[{"iso":"eng"}],"ec_funded":1,"title":"Interplay between syllable duration and pitch during whistle matching in wild nightingales","ddc":["570","577"],"date_published":"2026-01-12T00:00:00Z","date_created":"2026-01-14T12:00:29Z","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1016/j.cub.2025.12.025"}],"abstract":[{"text":"During complex vocal interactions, different features of acoustic stimuli are integrated to produce appropriate vocal responses,1 such as copying sounds during vocal matching behavior in some animals.2,3,4,5,6,7,8,9,10,11,12 However, little is known about the interplay and possible trade-offs between the different temporal and spectral acoustic features during these vocal exchanges.2,13,14 Nightingales can flexibly match the pitch of their tonal “whistle songs” in real time during counter-singing duels.15,16 Here, we show that the syllable duration of whistle playbacks could alter the song responses of wild nightingales, causing their whistle duration distribution to shift toward the presented stimulus duration. When exposed to whistle playbacks featuring unnatural combinations of pitch and duration, nightingales demonstrate a flexible trade-off between pitch matching and temporal imitation, yet they are constrained by their vocal repertoire. They selectively adapted their vocal responses to approximate these novel stimuli, aligning them with their natural whistle repertoire. We developed a computational model of nightingale whistle-matching behavior that revealed a hierarchical organization of acoustic feature production. During whistle matching, the feature integration process is constrained by the duration of syllables, and pitch matching follows within this temporal framework, forcing a trade-off between the two features. Our findings reveal a complex interplay between the spectral and temporal domains that shapes song-matching behavior.","lang":"eng"}],"day":"12","department":[{"_id":"GradSch"},{"_id":"TiVo"}],"publication":"Current Biology","publisher":"Elsevier","PlanS_conform":"1","citation":{"mla":"Calderon Garcia, Juan Sebastian, et al. “Interplay between Syllable Duration and Pitch during Whistle Matching in Wild Nightingales.” <i>Current Biology</i>, Elsevier, 2026, doi:<a href=\"https://doi.org/10.1016/j.cub.2025.12.025\">10.1016/j.cub.2025.12.025</a>.","chicago":"Calderon Garcia, Juan Sebastian, Giacomo Costalunga, Tim P Vogels, and Daniela Vallentin. “Interplay between Syllable Duration and Pitch during Whistle Matching in Wild Nightingales.” <i>Current Biology</i>. Elsevier, 2026. <a href=\"https://doi.org/10.1016/j.cub.2025.12.025\">https://doi.org/10.1016/j.cub.2025.12.025</a>.","short":"J.S. Calderon Garcia, G. Costalunga, T.P. Vogels, D. Vallentin, Current Biology (2026).","ista":"Calderon Garcia JS, Costalunga G, Vogels TP, Vallentin D. 2026. Interplay between syllable duration and pitch during whistle matching in wild nightingales. Current Biology.","apa":"Calderon Garcia, J. S., Costalunga, G., Vogels, T. P., &#38; Vallentin, D. (2026). Interplay between syllable duration and pitch during whistle matching in wild nightingales. <i>Current Biology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.cub.2025.12.025\">https://doi.org/10.1016/j.cub.2025.12.025</a>","ieee":"J. S. Calderon Garcia, G. Costalunga, T. P. Vogels, and D. Vallentin, “Interplay between syllable duration and pitch during whistle matching in wild nightingales,” <i>Current Biology</i>. Elsevier, 2026.","ama":"Calderon Garcia JS, Costalunga G, Vogels TP, Vallentin D. Interplay between syllable duration and pitch during whistle matching in wild nightingales. <i>Current Biology</i>. 2026. doi:<a href=\"https://doi.org/10.1016/j.cub.2025.12.025\">10.1016/j.cub.2025.12.025</a>"},"status":"public","year":"2026","publication_identifier":{"eissn":["1879-0445"],"issn":["0960-9822"]},"date_updated":"2026-01-20T07:33:32Z","article_processing_charge":"Yes (in subscription journal)","scopus_import":"1","article_type":"original","has_accepted_license":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"month":"01","volume":11,"type":"journal_article","publication_status":"published","acknowledgement":"This publication has emanated from research conducted with the financial support of Taighde Éireann-Research Ireland under Grant number 22/FFP-P/11591. C.F. and M.I. would like to acknowledge the financial support of ISTA and the Werner Siemens Foundation. N.N.P. acknowledges the financial support of AMBER under grant number 12/rc/2278_p2.","doi":"10.1021/acsenergylett.5c02909","author":[{"last_name":"Patil","first_name":"Niraj Nitish","full_name":"Patil, Niraj Nitish"},{"last_name":"Wu","first_name":"Ruiqi","full_name":"Wu, Ruiqi"},{"last_name":"Fiedler","id":"bd3fceba-dc74-11ea-a0a7-c17f71817366","first_name":"Christine","full_name":"Fiedler, Christine"},{"full_name":"Kapuria, Nilotpal","first_name":"Nilotpal","last_name":"Kapuria"},{"first_name":"Bingfei","full_name":"Nan, Bingfei","last_name":"Nan"},{"orcid":"0000-0001-7408-8197","full_name":"Navita, Navita","first_name":"Navita","id":"6ebe278d-ba0b-11ee-8184-f34cdc671de4","last_name":"Navita"},{"first_name":"Andreu","full_name":"Cabot, Andreu","last_name":"Cabot"},{"last_name":"Ibáñez","id":"43C61214-F248-11E8-B48F-1D18A9856A87","full_name":"Ibáñez, Maria","orcid":"0000-0001-5013-2843","first_name":"Maria"},{"first_name":"Kevin M.","full_name":"Ryan, Kevin M.","last_name":"Ryan"},{"full_name":"Ganose, Alex M.","first_name":"Alex M.","last_name":"Ganose"},{"last_name":"Singh","first_name":"Shalini","full_name":"Singh, Shalini"}],"oa_version":"None","issue":"1","_id":"21001","quality_controlled":"1","page":"481-488","OA_type":"closed access","project":[{"name":"HighTE: The Werner Siemens Laboratory for the High Throughput Discovery of Semiconductors for Waste Heat Recovery","_id":"9B8F7476-BA93-11EA-9121-9846C619BF3A"}],"day":"09","publication":"ACS Energy Letters","department":[{"_id":"MaIb"},{"_id":"GradSch"}],"date_created":"2026-01-18T23:02:43Z","abstract":[{"text":"Copper chalcogenides offer high charge mobility and low lattice thermal conductivity but suffer from structural instability due to dynamic Cu+ migration. Here, we report a colloidal hot-injection synthesis of ternary cesium copper selenide (CsCu5Se3) nanocrystals (NCs), achieving precise control over phase, size, and morphology through tailored precursor-ligand modulation. This strategy enabled systematic exploration of stable and metastable Cs–Cu–Se phases and mechanistic investigation of nucleation and growth, providing insight into phase modulation and dimensional control at the nanoscale. CsCu5Se3 NCs exhibit low lattice thermal conductivity (∼0.5 Wm–1K–1) and an experimental zT of 0.27 at 718 K. Complementary first-principles calculations, consistent with experimental electronic and optical responses, predict a zT of 1.05 at 1000 K. These findings elucidate the formation dynamics of CsCu5Se3 and establish ABZ (A = alkali, B = metal, Z = chalcogen) NCs as tunable platforms for advanced functional applications.","lang":"eng"}],"date_published":"2026-01-09T00:00:00Z","title":"Layered alkali-copper selenides: Deciphering thermoelectric properties and reaction pathways for nanostructuring β-CsCu5Se3","intvolume":"        11","language":[{"iso":"eng"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_processing_charge":"No","article_type":"letter_note","scopus_import":"1","publication_identifier":{"eissn":["2380-8195"]},"date_updated":"2026-01-19T08:43:21Z","year":"2026","status":"public","citation":{"chicago":"Patil, Niraj Nitish, Ruiqi Wu, Christine Fiedler, Nilotpal Kapuria, Bingfei Nan, Navita Jakhar, Andreu Cabot, et al. “Layered Alkali-Copper Selenides: Deciphering Thermoelectric Properties and Reaction Pathways for Nanostructuring β-CsCu5Se3.” <i>ACS Energy Letters</i>. American Chemical Society, 2026. <a href=\"https://doi.org/10.1021/acsenergylett.5c02909\">https://doi.org/10.1021/acsenergylett.5c02909</a>.","short":"N.N. Patil, R. Wu, C. Fiedler, N. Kapuria, B. Nan, N. Jakhar, A. Cabot, M. Ibáñez, K.M. Ryan, A.M. Ganose, S. Singh, ACS Energy Letters 11 (2026) 481–488.","mla":"Patil, Niraj Nitish, et al. “Layered Alkali-Copper Selenides: Deciphering Thermoelectric Properties and Reaction Pathways for Nanostructuring β-CsCu5Se3.” <i>ACS Energy Letters</i>, vol. 11, no. 1, American Chemical Society, 2026, pp. 481–88, doi:<a href=\"https://doi.org/10.1021/acsenergylett.5c02909\">10.1021/acsenergylett.5c02909</a>.","ieee":"N. N. Patil <i>et al.</i>, “Layered alkali-copper selenides: Deciphering thermoelectric properties and reaction pathways for nanostructuring β-CsCu5Se3,” <i>ACS Energy Letters</i>, vol. 11, no. 1. American Chemical Society, pp. 481–488, 2026.","ama":"Patil NN, Wu R, Fiedler C, et al. Layered alkali-copper selenides: Deciphering thermoelectric properties and reaction pathways for nanostructuring β-CsCu5Se3. <i>ACS Energy Letters</i>. 2026;11(1):481-488. doi:<a href=\"https://doi.org/10.1021/acsenergylett.5c02909\">10.1021/acsenergylett.5c02909</a>","apa":"Patil, N. N., Wu, R., Fiedler, C., Kapuria, N., Nan, B., Jakhar, N., … Singh, S. (2026). Layered alkali-copper selenides: Deciphering thermoelectric properties and reaction pathways for nanostructuring β-CsCu5Se3. <i>ACS Energy Letters</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/acsenergylett.5c02909\">https://doi.org/10.1021/acsenergylett.5c02909</a>","ista":"Patil NN, Wu R, Fiedler C, Kapuria N, Nan B, Jakhar N, Cabot A, Ibáñez M, Ryan KM, Ganose AM, Singh S. 2026. Layered alkali-copper selenides: Deciphering thermoelectric properties and reaction pathways for nanostructuring β-CsCu5Se3. ACS Energy Letters. 11(1), 481–488."},"publisher":"American Chemical Society"},{"corr_author":"1","year":"2026","status":"public","PlanS_conform":"1","citation":{"mla":"Browning, Timothy D. “The Davenport–Heilbronn Method: 80 Years On.” <i>Journal of the London Mathematical Society</i>, vol. 113, no. 1, e70371, Wiley, 2026, doi:<a href=\"https://doi.org/10.1112/jlms.70371\">10.1112/jlms.70371</a>.","chicago":"Browning, Timothy D. “The Davenport–Heilbronn Method: 80 Years On.” <i>Journal of the London Mathematical Society</i>. Wiley, 2026. <a href=\"https://doi.org/10.1112/jlms.70371\">https://doi.org/10.1112/jlms.70371</a>.","short":"T.D. Browning, Journal of the London Mathematical Society 113 (2026).","apa":"Browning, T. D. (2026). The Davenport–Heilbronn method: 80 years on. <i>Journal of the London Mathematical Society</i>. Wiley. <a href=\"https://doi.org/10.1112/jlms.70371\">https://doi.org/10.1112/jlms.70371</a>","ista":"Browning TD. 2026. The Davenport–Heilbronn method: 80 years on. Journal of the London Mathematical Society. 113(1), e70371.","ieee":"T. D. Browning, “The Davenport–Heilbronn method: 80 years on,” <i>Journal of the London Mathematical Society</i>, vol. 113, no. 1. Wiley, 2026.","ama":"Browning TD. The Davenport–Heilbronn method: 80 years on. <i>Journal of the London Mathematical Society</i>. 2026;113(1). doi:<a href=\"https://doi.org/10.1112/jlms.70371\">10.1112/jlms.70371</a>"},"publisher":"Wiley","has_accepted_license":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","scopus_import":"1","article_type":"original","article_processing_charge":"Yes (via OA deal)","file_date_updated":"2026-01-19T08:19:46Z","date_updated":"2026-01-19T08:23:15Z","publication_identifier":{"eissn":["1469-7750"],"issn":["0024-6107"]},"title":"The Davenport–Heilbronn method: 80 years on","intvolume":"       113","language":[{"iso":"eng"}],"publication":"Journal of the London Mathematical Society","department":[{"_id":"TiBr"}],"day":"06","abstract":[{"text":"The Davenport–Heilbronn method is a version of the circle method that was developed for studying Diophantine inequalities in the paper (Davenport and Heilbronn, J. Lond. Math. Soc. (1) 21 (1946), 185–193). We discuss the main ideas in the paper, together with an account of the development of the subject in the intervening 80 years.","lang":"eng"}],"date_created":"2026-01-18T23:02:44Z","date_published":"2026-01-06T00:00:00Z","ddc":["510"],"quality_controlled":"1","OA_type":"hybrid","project":[{"_id":"bd8a4fdc-d553-11ed-ba76-80a0167441a3","name":"Rational curves via function field analytic number theory","grant_number":"P36278"}],"oa":1,"_id":"21002","OA_place":"publisher","oa_version":"Published Version","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"issue":"1","volume":113,"type":"journal_article","month":"01","acknowledgement":"The author is very grateful to Jörg Brüdern, Simon Rydin Myerson and Trevor Wooley for their help and advice with preparing this survey, in addition to Vinay Kumaraswamy, Victor Wang and the anonymous referee for useful comments on an earlier draft. This work was supported by a FWF Grant (DOI 10.55776/P36278).\r\nOpen Access funding provided by Institute of Science and Technology Austria/KEMÖ.","publication_status":"published","doi":"10.1112/jlms.70371","article_number":"e70371","file":[{"file_size":235238,"success":1,"content_type":"application/pdf","file_name":"2026_JourLondonMathSoc_Browning.pdf","file_id":"21004","checksum":"3b05bd625c81d038259a14f7e2ddd57c","creator":"dernst","access_level":"open_access","date_created":"2026-01-19T08:19:46Z","date_updated":"2026-01-19T08:19:46Z","relation":"main_file"}],"author":[{"last_name":"Browning","id":"35827D50-F248-11E8-B48F-1D18A9856A87","full_name":"Browning, Timothy D","orcid":"0000-0002-8314-0177","first_name":"Timothy D"}]},{"doi":"10.1021/acscatal.5c07964","file":[{"date_updated":"2026-01-21T09:12:10Z","relation":"main_file","date_created":"2026-01-21T09:12:10Z","access_level":"open_access","file_id":"21030","checksum":"05743d6d7b4bae37aad1a91471123032","creator":"dernst","content_type":"application/pdf","file_name":"2026_ACSCatalysis_Bena.pdf","success":1,"file_size":3797064}],"author":[{"full_name":"Bena, Aleksander","first_name":"Aleksander","id":"4197c39e-e8ec-11ed-86cb-afed934cd664","last_name":"Bena"},{"last_name":"Pieber","id":"93e5e5b2-0da6-11ed-8a41-af589a024726","first_name":"Bartholomäus","full_name":"Pieber, Bartholomäus","orcid":"0000-0001-8689-388X"}],"volume":16,"type":"journal_article","month":"01","acknowledgement":"We gratefully acknowledge the Institute of Science and Technology Austria for generous financial support. B.P. acknowledges the Austrian Science Fund (PAT 1250924) for funding.","publication_status":"published","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"issue":"2","oa_version":"Published Version","OA_place":"publisher","_id":"21008","oa":1,"project":[{"name":"Photoactive ligands for transformative nickel catalysis","grant_number":"PAT 1250924","_id":"8f1d607d-16d5-11f0-9cad-ab453295ba5e"}],"quality_controlled":"1","OA_type":"hybrid","page":"866-881","abstract":[{"text":"C(sp2)–heteroatom couplings operating via NiI/NiIII catalysis have emerged as an alternative to canonical Pd0/PdII systems that require complex ligand architectures. Despite intensive research efforts during the past decade, catalytic methods employing this approach are still mostly confined to activated starting materials and require high catalyst loadings due to the low catalytic activity of NiI and undesired catalyst deactivation events. This article highlights recent advances in the field toward solving these long-standing challenges. We survey strategies that streamline the generation of catalytically competent NiI species from bench-stable NiII precatalysts, and discuss mechanistic studies that shed light on deactivation pathways and the rate-determining oxidative addition of aryl halides. In the final section, we highlight recently developed synthetic methodologies, which provide evidence that limitations can indeed be addressed by working at elevated temperatures, employing alternative electrophiles, harnessing the benefits of additives, or fine-tuning the metal’s reactivity through the ligand field.","lang":"eng"}],"date_created":"2026-01-20T10:04:57Z","date_published":"2026-01-16T00:00:00Z","ddc":["540"],"department":[{"_id":"BaPi"},{"_id":"GradSch"}],"publication":"ACS Catalysis","day":"16","language":[{"iso":"eng"}],"intvolume":"        16","title":"Advances in NiI/NiIII-catalyzed C(sp2)–heteroatom cross-couplings","article_type":"original","scopus_import":"1","article_processing_charge":"Yes (via OA deal)","date_updated":"2026-01-21T09:15:16Z","file_date_updated":"2026-01-21T09:12:10Z","publication_identifier":{"eissn":["2155-5435"]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","has_accepted_license":"1","citation":{"chicago":"Bena, Aleksander, and Bartholomäus Pieber. “Advances in NiI/NiIII-Catalyzed C(Sp2)–Heteroatom Cross-Couplings.” <i>ACS Catalysis</i>. American Chemical Society, 2026. <a href=\"https://doi.org/10.1021/acscatal.5c07964\">https://doi.org/10.1021/acscatal.5c07964</a>.","short":"A. Bena, B. Pieber, ACS Catalysis 16 (2026) 866–881.","mla":"Bena, Aleksander, and Bartholomäus Pieber. “Advances in NiI/NiIII-Catalyzed C(Sp2)–Heteroatom Cross-Couplings.” <i>ACS Catalysis</i>, vol. 16, no. 2, American Chemical Society, 2026, pp. 866–81, doi:<a href=\"https://doi.org/10.1021/acscatal.5c07964\">10.1021/acscatal.5c07964</a>.","ieee":"A. Bena and B. Pieber, “Advances in NiI/NiIII-catalyzed C(sp2)–heteroatom cross-couplings,” <i>ACS Catalysis</i>, vol. 16, no. 2. American Chemical Society, pp. 866–881, 2026.","ama":"Bena A, Pieber B. Advances in NiI/NiIII-catalyzed C(sp2)–heteroatom cross-couplings. <i>ACS Catalysis</i>. 2026;16(2):866-881. doi:<a href=\"https://doi.org/10.1021/acscatal.5c07964\">10.1021/acscatal.5c07964</a>","ista":"Bena A, Pieber B. 2026. Advances in NiI/NiIII-catalyzed C(sp2)–heteroatom cross-couplings. ACS Catalysis. 16(2), 866–881.","apa":"Bena, A., &#38; Pieber, B. (2026). Advances in NiI/NiIII-catalyzed C(sp2)–heteroatom cross-couplings. <i>ACS Catalysis</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/acscatal.5c07964\">https://doi.org/10.1021/acscatal.5c07964</a>"},"PlanS_conform":"1","publisher":"American Chemical Society","year":"2026","corr_author":"1","status":"public"},{"day":"01","publication":"Communications of the ACM","department":[{"_id":"ToHe"}],"ddc":["000"],"date_published":"2026-01-01T00:00:00Z","date_created":"2026-01-20T10:08:21Z","abstract":[{"lang":"eng","text":"In certifiable machine learning, AI systems produce not only results but also verifiable certificates that the results can be trusted."}],"ec_funded":1,"intvolume":"        69","title":"Certificates in AI: Learn but verify","language":[{"iso":"eng"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","has_accepted_license":"1","publication_identifier":{"issn":["0001-0782"],"eissn":["1557-7317"]},"file_date_updated":"2026-01-21T08:52:07Z","date_updated":"2026-01-21T08:55:24Z","article_processing_charge":"Yes (via OA deal)","article_type":"original","scopus_import":"1","status":"public","year":"2026","corr_author":"1","publisher":"Association for Computing Machinery","citation":{"ama":"Barrett C, Henzinger TA, Seshia SA. Certificates in AI: Learn but verify. <i>Communications of the ACM</i>. 2026;69(1):66-75. doi:<a href=\"https://doi.org/10.1145/3737447\">10.1145/3737447</a>","ieee":"C. Barrett, T. A. Henzinger, and S. A. Seshia, “Certificates in AI: Learn but verify,” <i>Communications of the ACM</i>, vol. 69, no. 1. Association for Computing Machinery, pp. 66–75, 2026.","apa":"Barrett, C., Henzinger, T. A., &#38; Seshia, S. A. (2026). Certificates in AI: Learn but verify. <i>Communications of the ACM</i>. Association for Computing Machinery. <a href=\"https://doi.org/10.1145/3737447\">https://doi.org/10.1145/3737447</a>","ista":"Barrett C, Henzinger TA, Seshia SA. 2026. Certificates in AI: Learn but verify. Communications of the ACM. 69(1), 66–75.","short":"C. Barrett, T.A. Henzinger, S.A. Seshia, Communications of the ACM 69 (2026) 66–75.","chicago":"Barrett, Clark, Thomas A Henzinger, and Sanjit A. Seshia. “Certificates in AI: Learn but Verify.” <i>Communications of the ACM</i>. Association for Computing Machinery, 2026. <a href=\"https://doi.org/10.1145/3737447\">https://doi.org/10.1145/3737447</a>.","mla":"Barrett, Clark, et al. “Certificates in AI: Learn but Verify.” <i>Communications of the ACM</i>, vol. 69, no. 1, Association for Computing Machinery, 2026, pp. 66–75, doi:<a href=\"https://doi.org/10.1145/3737447\">10.1145/3737447</a>."},"PlanS_conform":"1","publication_status":"published","acknowledgement":"T.A.H. thanks Đorde Žikelic for many stimulating discussions about CML. This work was supported in part by NSFCPS Frontier Grant 1545126, by a BAIR Commons project, by the Berkeley iCy-Phy Center, by the Stanford Center for Automated Reasoning, and by the ERC Advanced Grant 101020093.","month":"01","type":"journal_article","volume":69,"author":[{"last_name":"Barrett","first_name":"Clark","full_name":"Barrett, Clark"},{"last_name":"Henzinger","id":"40876CD8-F248-11E8-B48F-1D18A9856A87","full_name":"Henzinger, Thomas A","orcid":"0000-0002-2985-7724","first_name":"Thomas A"},{"last_name":"Seshia","full_name":"Seshia, Sanjit A.","first_name":"Sanjit A."}],"file":[{"date_updated":"2026-01-21T08:52:07Z","relation":"main_file","date_created":"2026-01-21T08:52:07Z","file_name":"2026_CommACM_Barrett.pdf","content_type":"application/pdf","success":1,"file_size":2623108,"access_level":"open_access","file_id":"21028","checksum":"d909a9091c254b2d18ba014124663f69","creator":"dernst"}],"doi":"10.1145/3737447","oa_version":"Published Version","issue":"1","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"oa":1,"_id":"21012","OA_place":"publisher","OA_type":"hybrid","page":"66-75","quality_controlled":"1","project":[{"name":"Vigilant Algorithmic Monitoring of Software","grant_number":"101020093","_id":"62781420-2b32-11ec-9570-8d9b63373d4d","call_identifier":"H2020"}]},{"oa":1,"_id":"21013","OA_place":"publisher","quality_controlled":"1","OA_type":"gold","project":[{"name":"Organization of CLoUdS, and implications of Tropical  cyclones and for the Energetics of the tropics, in current and waRming climate","grant_number":"805041","_id":"629205d8-2b32-11ec-9570-e1356ff73576","call_identifier":"H2020"}],"month":"01","DOAJ_listed":"1","type":"journal_article","volume":18,"publication_status":"published","acknowledgement":"The authors gratefully acknowledge funding from the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation program (Project CLUSTER, Grant Agreement No. 805041). This research was supported by the Scientific Service Units (SSU) of ISTA through resources provided by Scientific Computing (SciComp). We are grateful to three anonymous reviewer(s) for their insightful suggestions that have improved the quality of our manuscript. Open Access funding provided by Institute of Science and Technology Austria/KEMÖ.","article_number":"e2024MS004576","file":[{"file_size":19509786,"file_name":"2026_JAMES_Goswami.pdf","content_type":"application/pdf","success":1,"creator":"dernst","checksum":"6ea369e3b46bea58efab4f38b6c671a7","file_id":"21027","access_level":"open_access","date_created":"2026-01-21T08:39:01Z","date_updated":"2026-01-21T08:39:01Z","relation":"main_file"}],"doi":"10.1029/2024ms004576","author":[{"id":"3a4ac09c-6d61-11ec-bf66-884cde66b64b","last_name":"GOSWAMI","orcid":"0000-0001-8602-3083","full_name":"GOSWAMI, BIDYUT B","first_name":"BIDYUT B"},{"id":"a6e549c6-8972-11ed-ae7b-a336d97ac043","last_name":"Lu","orcid":"0009-0008-5320-7730","full_name":"Lu, Ziyin","first_name":"Ziyin"},{"orcid":"0000-0001-5836-5350","full_name":"Muller, Caroline J","first_name":"Caroline J","id":"f978ccb0-3f7f-11eb-b193-b0e2bd13182b","last_name":"Muller"}],"oa_version":"Published Version","issue":"1","tmp":{"short":"CC BY-NC-ND (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","image":"/images/cc_by_nc_nd.png","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)"},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","has_accepted_license":"1","article_processing_charge":"Yes","article_type":"original","scopus_import":"1","publication_identifier":{"eissn":["1942-2466"]},"file_date_updated":"2026-01-21T08:39:01Z","date_updated":"2026-01-21T08:41:19Z","year":"2026","corr_author":"1","status":"public","PlanS_conform":"1","citation":{"short":"B.B. GOSWAMI, Z. Lu, C.J. Muller, Journal of Advances in Modeling Earth Systems 18 (2026).","chicago":"GOSWAMI, BIDYUT B, Ziyin Lu, and Caroline J Muller. “Convective Self‐aggregation in Diurnally Oscillating Sea Surface Temperature and Solar Forcing Experiments.” <i>Journal of Advances in Modeling Earth Systems</i>. Wiley, 2026. <a href=\"https://doi.org/10.1029/2024ms004576\">https://doi.org/10.1029/2024ms004576</a>.","mla":"GOSWAMI, BIDYUT B., et al. “Convective Self‐aggregation in Diurnally Oscillating Sea Surface Temperature and Solar Forcing Experiments.” <i>Journal of Advances in Modeling Earth Systems</i>, vol. 18, no. 1, e2024MS004576, Wiley, 2026, doi:<a href=\"https://doi.org/10.1029/2024ms004576\">10.1029/2024ms004576</a>.","ieee":"B. B. GOSWAMI, Z. Lu, and C. J. Muller, “Convective self‐aggregation in diurnally oscillating sea surface temperature and solar forcing experiments,” <i>Journal of Advances in Modeling Earth Systems</i>, vol. 18, no. 1. Wiley, 2026.","ama":"GOSWAMI BB, Lu Z, Muller CJ. Convective self‐aggregation in diurnally oscillating sea surface temperature and solar forcing experiments. <i>Journal of Advances in Modeling Earth Systems</i>. 2026;18(1). doi:<a href=\"https://doi.org/10.1029/2024ms004576\">10.1029/2024ms004576</a>","apa":"GOSWAMI, B. B., Lu, Z., &#38; Muller, C. J. (2026). Convective self‐aggregation in diurnally oscillating sea surface temperature and solar forcing experiments. <i>Journal of Advances in Modeling Earth Systems</i>. Wiley. <a href=\"https://doi.org/10.1029/2024ms004576\">https://doi.org/10.1029/2024ms004576</a>","ista":"GOSWAMI BB, Lu Z, Muller CJ. 2026. Convective self‐aggregation in diurnally oscillating sea surface temperature and solar forcing experiments. Journal of Advances in Modeling Earth Systems. 18(1), e2024MS004576."},"publisher":"Wiley","license":"https://creativecommons.org/licenses/by-nc-nd/4.0/","day":"12","publication":"Journal of Advances in Modeling Earth Systems","department":[{"_id":"CaMu"},{"_id":"BjHo"},{"_id":"GradSch"}],"date_created":"2026-01-20T10:08:54Z","abstract":[{"text":"We have addressed convective self‐aggregation (CSA) in steady and oscillating sea surface temperature (SST) and solar radiation (SOLIN) cloud‐resolving model simulations in a non‐rotating radiative‐convective equilibrium (RCE) framework. Our experiment designs are motivated by land‐ocean heterogeneity of atmospheric convection. The steady and oscillating forcings are idealizations of ocean and land conditions, respectively, based on their differences in heat capacities. In both kinds of simulations, the diurnal mean SST and SOLIN are the same, and both SST and SOLIN are only varied in time (i.e., they are spatially homogeneous at any given time). We find that diurnally oscillating forcing accelerates CSA. Stronger long‐wave cooling in dry regions at night and during the warm SST phase (late afternoon) both allow the long‐wave feedback, known to favor aggregation, to intensify compared to steady forcing simulations. In addition to the long‐wave, reduced short‐wave warming in dry regions (during the day) further enhances radiative cooling there compared to moist regions. Overall, the radiative cooling is enhanced in dry regions compared to neighboring moist convective regions. A dry subsidence is driven by this net radiative (short‐wave plus long‐wave) cooling, consistent with earlier work on CSA. Stronger radiative cooling allows stronger subsidence which allows low‐level circulation to more efficiently transport moisture and energy up‐gradient, driving convection to aggregate faster. We also note a sensitivity of our experimental setup to initial conditions, more so at warmer SST. This stochastic behavior might be critical in reconciling the differences of opinion regarding the response of convection aggregation to oscillating SST forcing.","lang":"eng"}],"ddc":["550"],"date_published":"2026-01-12T00:00:00Z","intvolume":"        18","title":"Convective self‐aggregation in diurnally oscillating sea surface temperature and solar forcing experiments","ec_funded":1,"acknowledged_ssus":[{"_id":"ScienComp"}],"language":[{"iso":"eng"}]},{"project":[{"call_identifier":"H2020","grant_number":"101034413","name":"IST-BRIDGE: International postdoctoral program","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c"}],"OA_type":"hybrid","quality_controlled":"1","OA_place":"publisher","oa":1,"_id":"21018","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"oa_version":"Published Version","author":[{"last_name":"Brigati","id":"63ff57e8-1fbb-11ee-88f2-f558ffc59cf1","full_name":"Brigati, Giovanni","first_name":"Giovanni"},{"first_name":"Jean","full_name":"Dolbeault, Jean","last_name":"Dolbeault"},{"first_name":"Nikita","full_name":"Simonov, Nikita","last_name":"Simonov"}],"file":[{"date_created":"2026-01-21T07:45:03Z","date_updated":"2026-01-21T07:45:03Z","relation":"main_file","file_size":4992025,"content_type":"application/pdf","success":1,"file_name":"2026_LaMatematica_Brigati.pdf","creator":"dernst","checksum":"0702d8397f216555b1d5286e5d77f09c","file_id":"21025","access_level":"open_access"}],"article_number":"5","doi":"10.1007/s44007-025-00180-y","publication_status":"published","acknowledgement":"This work has been supported by the Project Conviviality (ANR-23-CE40–0003) of the French National Research Agency. G.B. has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No 101034413. The authors thank a referee for a careful reading and suggestions which result in a significant improvement of the manuscript. Open access funding provided by Institute of Science and Technology (IST Austria). The work of GB has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No 101034413. This work has been supported by the Project Conviviality (ANR-23-CE40–0003) of the French National Research Agency.","month":"01","volume":5,"type":"journal_article","arxiv":1,"publisher":"Springer Nature","PlanS_conform":"1","citation":{"ama":"Brigati G, Dolbeault J, Simonov N. Logarithmic Sobolev Inequalities: A review on stability and instability results. <i>La Matematica</i>. 2026;5. doi:<a href=\"https://doi.org/10.1007/s44007-025-00180-y\">10.1007/s44007-025-00180-y</a>","ieee":"G. Brigati, J. Dolbeault, and N. Simonov, “Logarithmic Sobolev Inequalities: A review on stability and instability results,” <i>La Matematica</i>, vol. 5. Springer Nature, 2026.","apa":"Brigati, G., Dolbeault, J., &#38; Simonov, N. (2026). Logarithmic Sobolev Inequalities: A review on stability and instability results. <i>La Matematica</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s44007-025-00180-y\">https://doi.org/10.1007/s44007-025-00180-y</a>","ista":"Brigati G, Dolbeault J, Simonov N. 2026. Logarithmic Sobolev Inequalities: A review on stability and instability results. La Matematica. 5, 5.","short":"G. Brigati, J. Dolbeault, N. Simonov, La Matematica 5 (2026).","chicago":"Brigati, Giovanni, Jean Dolbeault, and Nikita Simonov. “Logarithmic Sobolev Inequalities: A Review on Stability and Instability Results.” <i>La Matematica</i>. Springer Nature, 2026. <a href=\"https://doi.org/10.1007/s44007-025-00180-y\">https://doi.org/10.1007/s44007-025-00180-y</a>.","mla":"Brigati, Giovanni, et al. “Logarithmic Sobolev Inequalities: A Review on Stability and Instability Results.” <i>La Matematica</i>, vol. 5, 5, Springer Nature, 2026, doi:<a href=\"https://doi.org/10.1007/s44007-025-00180-y\">10.1007/s44007-025-00180-y</a>."},"external_id":{"arxiv":["2504.08658"]},"status":"public","corr_author":"1","year":"2026","publication_identifier":{"issn":["2730-9657"]},"file_date_updated":"2026-01-21T07:45:03Z","date_updated":"2026-01-21T07:48:28Z","article_processing_charge":"Yes (via OA deal)","scopus_import":"1","article_type":"original","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","has_accepted_license":"1","language":[{"iso":"eng"}],"ec_funded":1,"title":"Logarithmic Sobolev Inequalities: A review on stability and instability results","intvolume":"         5","ddc":["510"],"date_published":"2026-01-08T00:00:00Z","date_created":"2026-01-20T10:14:55Z","abstract":[{"lang":"eng","text":"In this paper, we review recent results on stability and instability in logarithmic Sobolev inequalities, with a particular emphasis on strong norms. We consider several versions of these inequalities on the Euclidean space, for the Lebesgue and the Gaussian measures, and discuss their differences in terms of moments and stability. We give new and direct proofs, as well as examples and discuss the stability of a logarithmic uncertainty principle. Although we do not cover all aspects of the topic, we hope to contribute to establishing the state of the art."}],"day":"08","publication":"La Matematica","department":[{"_id":"JaMa"}]},{"date_created":"2026-01-25T23:01:38Z","abstract":[{"text":"According to the scientific consensus, tropical convection must decrease with global warming. This decrease is manifested by a decrease of the mass transported in the upward branch of the atmospheric overturning circulation – the convective mass flux – and a connected decrease of high clouds in the tropics, with implications for climate sensitivity. By using kilometer-scale simulations in radiative-convective equilibrium and a convective tracking algorithm, we show that no such decrease occurs in storms when taken individually and that the mass transport per storm increases instead. Storms can achieve this result by aggregating more surface of the convective cores – the inner part of the storm doing the vertical transport – so that the decrease of tropical convection is actually explained by a decrease in the total number of storms. There is little variation of the mean pressure velocity in the cores of the storms, a robust finding of this study. This remarkable invariance of the mean pressure velocity points to an emerging property of convection that should receive more attention in future studies.","lang":"eng"}],"ddc":["550"],"date_published":"2026-01-15T00:00:00Z","day":"15","publication":"npj Climate and Atmospheric Science","department":[{"_id":"CaMu"}],"language":[{"iso":"eng"}],"intvolume":"         9","title":"No decrease of tropical convection in individual deep convective systems with global warming","ec_funded":1,"article_processing_charge":"Yes","scopus_import":"1","article_type":"original","publication_identifier":{"eissn":["2397-3722"]},"date_updated":"2026-02-12T08:41:09Z","file_date_updated":"2026-02-12T08:39:27Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","has_accepted_license":"1","citation":{"mla":"Bolot, Maximilien, et al. “No Decrease of Tropical Convection in Individual Deep Convective Systems with Global Warming.” <i>Npj Climate and Atmospheric Science</i>, vol. 9, 14, Springer Nature, 2026, doi:<a href=\"https://doi.org/10.1038/s41612-025-01285-5\">10.1038/s41612-025-01285-5</a>.","chicago":"Bolot, Maximilien, Rémy Roca, Thomas Fiolleau, and Caroline J Muller. “No Decrease of Tropical Convection in Individual Deep Convective Systems with Global Warming.” <i>Npj Climate and Atmospheric Science</i>. Springer Nature, 2026. <a href=\"https://doi.org/10.1038/s41612-025-01285-5\">https://doi.org/10.1038/s41612-025-01285-5</a>.","short":"M. Bolot, R. Roca, T. Fiolleau, C.J. Muller, Npj Climate and Atmospheric Science 9 (2026).","apa":"Bolot, M., Roca, R., Fiolleau, T., &#38; Muller, C. J. (2026). No decrease of tropical convection in individual deep convective systems with global warming. <i>Npj Climate and Atmospheric Science</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41612-025-01285-5\">https://doi.org/10.1038/s41612-025-01285-5</a>","ista":"Bolot M, Roca R, Fiolleau T, Muller CJ. 2026. No decrease of tropical convection in individual deep convective systems with global warming. npj Climate and Atmospheric Science. 9, 14.","ama":"Bolot M, Roca R, Fiolleau T, Muller CJ. No decrease of tropical convection in individual deep convective systems with global warming. <i>npj Climate and Atmospheric Science</i>. 2026;9. doi:<a href=\"https://doi.org/10.1038/s41612-025-01285-5\">10.1038/s41612-025-01285-5</a>","ieee":"M. Bolot, R. Roca, T. Fiolleau, and C. J. Muller, “No decrease of tropical convection in individual deep convective systems with global warming,” <i>npj Climate and Atmospheric Science</i>, vol. 9. Springer Nature, 2026."},"publisher":"Springer Nature","year":"2026","external_id":{"pmid":["41550270"]},"status":"public","file":[{"access_level":"open_access","file_id":"21215","creator":"dernst","checksum":"c433bba3822b3c6c4a5260ad5e2429a0","content_type":"application/pdf","file_name":"2026_njpClimateAtmScience_Bolot.pdf","success":1,"file_size":511226,"relation":"main_file","date_updated":"2026-02-12T08:39:27Z","date_created":"2026-02-12T08:39:27Z"}],"article_number":"14","doi":"10.1038/s41612-025-01285-5","author":[{"first_name":"Maximilien","full_name":"Bolot, Maximilien","last_name":"Bolot"},{"full_name":"Roca, Rémy","first_name":"Rémy","last_name":"Roca"},{"last_name":"Fiolleau","full_name":"Fiolleau, Thomas","first_name":"Thomas"},{"first_name":"Caroline J","orcid":"0000-0001-5836-5350","full_name":"Muller, Caroline J","id":"f978ccb0-3f7f-11eb-b193-b0e2bd13182b","last_name":"Muller"}],"month":"01","DOAJ_listed":"1","type":"journal_article","volume":9,"publication_status":"published","acknowledgement":"We thank Sophie Cloché for her support with the handling of the various datasets. This study benefited from the IPSL mesocenter ESPRI facility which is supported by CNRS, UPMC, Labex L-IPSL, CNES and Ecole Polytechnique. The authors acknowledge the CNES and CNRS support under the Megha-Tropiques program. C.M. gratefully acknowledges funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation program (Project CLUSTER, Grant Agreement No. 805041).","tmp":{"short":"CC BY-NC-ND (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","image":"/images/cc_by_nc_nd.png","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)"},"oa_version":"Published Version","OA_place":"publisher","oa":1,"_id":"21035","project":[{"grant_number":"805041","name":"Organization of CLoUdS, and implications of Tropical  cyclones and for the Energetics of the tropics, in current and waRming climate","_id":"629205d8-2b32-11ec-9570-e1356ff73576","call_identifier":"H2020"}],"pmid":1,"quality_controlled":"1","OA_type":"gold"},{"oa_version":"None","publication_status":"epub_ahead","acknowledgement":"We would like to thank Guillermo Ortiz (CADIC-CONICET) for his invaluable support in the field and lab work. We are extremely grateful to the ranchers for kindly allowing us access to their fields. Funding for this work was provided by the Argentine National Scientific and Technical Research Council (CONICET) and the National Agency for Scientific Promotion through project PICT 2019–675. PR was also granted the Mobility Scholarship Program 2025 between Andalusian and Ibero-American Universities (AUIP). VCA is co-supported by the Community of Madrid under the 2024 call for the ‘César Nombela’ research talent attraction programme (2024-T1/ECO-31335).","month":"01","volume":400,"type":"journal_article","author":[{"last_name":"Rodríguez","full_name":"Rodríguez, Paula","first_name":"Paula"},{"last_name":"Cruz Alonso","full_name":"Cruz Alonso, Verónica","first_name":"Verónica"},{"last_name":"Romano","full_name":"Romano, Silvina","first_name":"Silvina"},{"full_name":"Bustamante, Gimena","first_name":"Gimena","last_name":"Bustamante"},{"first_name":"Rosina Matilde","full_name":"Soler Schaller, Rosina Matilde","id":"9e668447-8c32-11ed-b0c7-8dc2d7b80803","last_name":"Soler Schaller"}],"article_number":"110219","doi":"10.1016/j.agee.2026.110219","OA_type":"closed access","quality_controlled":"1","_id":"21036","intvolume":"       400","title":"Context-dependent effects of livestock grazing on forest attributes and ecosystem multifunctionality in Nothofagus forests","language":[{"iso":"eng"}],"day":"06","publication":"Agriculture, Ecosystems and Environment","department":[{"_id":"NiBa"}],"date_published":"2026-01-06T00:00:00Z","date_created":"2026-01-25T23:01:38Z","abstract":[{"lang":"eng","text":"Forests under livestock grazing sustain important ecosystem services but face potential trade-offs between production and ecological integrity. While the effects of grazing on individual forest attributes are well documented, their integrated consequences remain poorly understood, particularly in temperate forest ecosystems. We evaluated the combined influence of livestock grazing intensity and canopy cover on individual attributes and ecosystem multifunctionality in native Nothofagus forests of Tierra del Fuego, Argentina. Across eight ranches spanning two agroecological regions (Ecotone and Mountain Range), we quantified forest regeneration, understorey richness and biomass, and soil properties, integrating them into a multifunctionality index. Using generalized linear mixed models, we found strong context-dependence: in the Mountain Range, higher grazing intensity reduced seedling and sapling density, organic matter content, coarse woody debris, and overall multifunctionality. In the Ecotone, these effects of livestock use intensity were attenuated, and canopy cover diminished sapling density and multifunctionality, but moderate cover enhanced understorey. Our results extend multifunctionality research from grazed grasslands to grazed temperate forests and show that ecological responses and trade-offs vary across landscape units. We conclude that the Mountain Range is more vulnerable to grazing, requiring stricter management, whereas the Ecotone retains greater capacity to sustain multifunctionality under controlled livestock use intensity. These findings underscore the importance of region-specific silvopastoral strategies that reconcile food production with forest conservation in southern Patagonia and comparable temperate forest landscapes worldwide."}],"status":"public","year":"2026","publisher":"Elsevier","citation":{"chicago":"Rodríguez, Paula, Verónica Cruz Alonso, Silvina Romano, Gimena Bustamante, and Rosina Matilde Soler Schaller. “Context-Dependent Effects of Livestock Grazing on Forest Attributes and Ecosystem Multifunctionality in Nothofagus Forests.” <i>Agriculture, Ecosystems and Environment</i>. Elsevier, 2026. <a href=\"https://doi.org/10.1016/j.agee.2026.110219\">https://doi.org/10.1016/j.agee.2026.110219</a>.","short":"P. Rodríguez, V. Cruz Alonso, S. Romano, G. Bustamante, R.M. Soler Schaller, Agriculture, Ecosystems and Environment 400 (2026).","mla":"Rodríguez, Paula, et al. “Context-Dependent Effects of Livestock Grazing on Forest Attributes and Ecosystem Multifunctionality in Nothofagus Forests.” <i>Agriculture, Ecosystems and Environment</i>, vol. 400, 110219, Elsevier, 2026, doi:<a href=\"https://doi.org/10.1016/j.agee.2026.110219\">10.1016/j.agee.2026.110219</a>.","ama":"Rodríguez P, Cruz Alonso V, Romano S, Bustamante G, Soler Schaller RM. Context-dependent effects of livestock grazing on forest attributes and ecosystem multifunctionality in Nothofagus forests. <i>Agriculture, Ecosystems and Environment</i>. 2026;400. doi:<a href=\"https://doi.org/10.1016/j.agee.2026.110219\">10.1016/j.agee.2026.110219</a>","ieee":"P. Rodríguez, V. Cruz Alonso, S. Romano, G. Bustamante, and R. M. Soler Schaller, “Context-dependent effects of livestock grazing on forest attributes and ecosystem multifunctionality in Nothofagus forests,” <i>Agriculture, Ecosystems and Environment</i>, vol. 400. Elsevier, 2026.","apa":"Rodríguez, P., Cruz Alonso, V., Romano, S., Bustamante, G., &#38; Soler Schaller, R. M. (2026). Context-dependent effects of livestock grazing on forest attributes and ecosystem multifunctionality in Nothofagus forests. <i>Agriculture, Ecosystems and Environment</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.agee.2026.110219\">https://doi.org/10.1016/j.agee.2026.110219</a>","ista":"Rodríguez P, Cruz Alonso V, Romano S, Bustamante G, Soler Schaller RM. 2026. Context-dependent effects of livestock grazing on forest attributes and ecosystem multifunctionality in Nothofagus forests. Agriculture, Ecosystems and Environment. 400, 110219."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_identifier":{"issn":["0167-8809"]},"date_updated":"2026-02-12T08:34:21Z","article_processing_charge":"No","article_type":"original","scopus_import":"1"}]