[{"type":"journal_article","abstract":[{"lang":"eng","text":"Enhanced glutamatergic neurotransmission via the subthalamopallidal or subthalamonigral projection seems crucial for developing parkinsonian motor signs. In the present study, the possible changes in the expression of metabotropic glutamate receptors (mGluRs) were examined in the basal ganglia of a primate model for Parkinson's disease. When the patterns of immunohistochemical localization of mGluRs in monkeys administered systemically with 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine (MPTP) were analysed in comparison with normal controls, we found that expression of mGluR1α, but not of other subtypes, was significantly reduced in the internal and external segments of the globus pallidus and the substantia nigra pars reticulata. To elucidate the functional role of mGluR1 in the control of pallidal neuron activity, extracellular unit recordings combined with intrapallidal microinjections of mGluR1-related agents were then performed in normal and parkinsonian monkeys. In normal awake conditions, the spontaneous firing rates of neurons in the pallidal complex were increased by DHPG, a selective agonist of group I mGluRs, whereas they were decreased by AIDA, a selective antagonist of group I mGluRs, or LY367385, a selective antagonist of mGluR1. These electrophysiological data strongly indicate that the excitatory mechanism of pallidal neurons by glutamate is mediated at least partly through mGluR1. The effects of the mGluR1-related agents on neuronal firing in the internal pallidal segment became rather obscure after MPTP treatment. Our results suggest that the specific down-regulation of pallidal and nigral mGluR1 ot in the parkinsonian state may exert a compensatory action to reverse the overactivity of the subthalamic nucleus-derived glutamatergic input that is generated in the disease."}],"doi":"10.1111/j.1460-9568.2005.04488.x","day":"01","extern":1,"citation":{"short":"K. Kaneda, Y. Tachibana, M. Imanishi, H. Kita, R. Shigemoto, A. Nambu, M. Takada, European Journal of Neuroscience 22 (2005) 3241–3254.","ista":"Kaneda K, Tachibana Y, Imanishi M, Kita H, Shigemoto R, Nambu A, Takada M. 2005. Down-regulation of metabotropic glutamate receptor 1α in globus pallidus and substantia nigra of parkinsonian monkeys. European Journal of Neuroscience. 22(12), 3241–3254.","chicago":"Kaneda, Katsuyuki, Yoshihisa Tachibana, Michiko Imanishi, Hitoshi Kita, Ryuichi Shigemoto, Atsushi Nambu, and Masahiko Takada. “Down-Regulation of Metabotropic Glutamate Receptor 1α in Globus Pallidus and Substantia Nigra of Parkinsonian Monkeys.” <i>European Journal of Neuroscience</i>. Wiley-Blackwell, 2005. <a href=\"https://doi.org/10.1111/j.1460-9568.2005.04488.x\">https://doi.org/10.1111/j.1460-9568.2005.04488.x</a>.","mla":"Kaneda, Katsuyuki, et al. “Down-Regulation of Metabotropic Glutamate Receptor 1α in Globus Pallidus and Substantia Nigra of Parkinsonian Monkeys.” <i>European Journal of Neuroscience</i>, vol. 22, no. 12, Wiley-Blackwell, 2005, pp. 3241–54, doi:<a href=\"https://doi.org/10.1111/j.1460-9568.2005.04488.x\">10.1111/j.1460-9568.2005.04488.x</a>.","ieee":"K. Kaneda <i>et al.</i>, “Down-regulation of metabotropic glutamate receptor 1α in globus pallidus and substantia nigra of parkinsonian monkeys,” <i>European Journal of Neuroscience</i>, vol. 22, no. 12. Wiley-Blackwell, pp. 3241–3254, 2005.","apa":"Kaneda, K., Tachibana, Y., Imanishi, M., Kita, H., Shigemoto, R., Nambu, A., &#38; Takada, M. (2005). Down-regulation of metabotropic glutamate receptor 1α in globus pallidus and substantia nigra of parkinsonian monkeys. <i>European Journal of Neuroscience</i>. Wiley-Blackwell. <a href=\"https://doi.org/10.1111/j.1460-9568.2005.04488.x\">https://doi.org/10.1111/j.1460-9568.2005.04488.x</a>","ama":"Kaneda K, Tachibana Y, Imanishi M, et al. Down-regulation of metabotropic glutamate receptor 1α in globus pallidus and substantia nigra of parkinsonian monkeys. <i>European Journal of Neuroscience</i>. 2005;22(12):3241-3254. doi:<a href=\"https://doi.org/10.1111/j.1460-9568.2005.04488.x\">10.1111/j.1460-9568.2005.04488.x</a>"},"intvolume":"        22","quality_controlled":0,"date_published":"2005-12-01T00:00:00Z","year":"2005","volume":22,"publication":"European Journal of Neuroscience","publisher":"Wiley-Blackwell","publication_status":"published","date_created":"2018-12-11T11:58:55Z","publist_id":"4240","title":"Down-regulation of metabotropic glutamate receptor 1α in globus pallidus and substantia nigra of parkinsonian monkeys","author":[{"last_name":"Kaneda","full_name":"Kaneda, Katsuyuki","first_name":"Katsuyuki"},{"first_name":"Yoshihisa","full_name":"Tachibana, Yoshihisa","last_name":"Tachibana"},{"first_name":"Michiko","last_name":"Imanishi","full_name":"Imanishi, Michiko"},{"first_name":"Hitoshi","full_name":"Kita, Hitoshi","last_name":"Kita"},{"first_name":"Ryuichi","orcid":"0000-0001-8761-9444","id":"499F3ABC-F248-11E8-B48F-1D18A9856A87","full_name":"Ryuichi Shigemoto","last_name":"Shigemoto"},{"first_name":"Atsushi","last_name":"Nambu","full_name":"Nambu, Atsushi"},{"first_name":"Masahiko","full_name":"Takada, Masahiko","last_name":"Takada"}],"_id":"2658","date_updated":"2021-01-12T06:58:52Z","page":"3241 - 3254","status":"public","month":"12","issue":"12"},{"publication_status":"published","date_created":"2018-12-11T11:59:22Z","publist_id":"4149","author":[{"full_name":"László Erdös","last_name":"Erdös","id":"4DBD5372-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5366-9603","first_name":"László"},{"last_name":"Hasler","full_name":"Hasler, David G","first_name":"David"},{"first_name":"Jan","full_name":"Solovej, Jan P","last_name":"Solovej"}],"title":"Existence of the D0-D4 bound state: A detailed proof","date_updated":"2021-01-12T06:59:24Z","_id":"2743","page":"247 - 267","status":"public","month":"04","issue":"2","type":"journal_article","doi":"10.1007/s00023-005-0205-0","abstract":[{"text":"We consider the supersymmetric quantum mechanical system which is obtained by dimensionally reducing d = 6, N = 1 supersymmetric gauge theory with gauge group U(1) and a single charged hypermultiplet. Using the deformation method and ideas introduced by Porrati and Rozenberg [1], we present a detailed proof of the existence of a normalizable ground state for this system.","lang":"eng"}],"day":"01","extern":1,"citation":{"ama":"Erdös L, Hasler D, Solovej J. Existence of the D0-D4 bound state: A detailed proof. <i>Annales Henri Poincare</i>. 2005;6(2):247-267. doi:<a href=\"https://doi.org/10.1007/s00023-005-0205-0\">10.1007/s00023-005-0205-0</a>","ieee":"L. Erdös, D. Hasler, and J. Solovej, “Existence of the D0-D4 bound state: A detailed proof,” <i>Annales Henri Poincare</i>, vol. 6, no. 2. Birkhäuser, pp. 247–267, 2005.","apa":"Erdös, L., Hasler, D., &#38; Solovej, J. (2005). Existence of the D0-D4 bound state: A detailed proof. <i>Annales Henri Poincare</i>. Birkhäuser. <a href=\"https://doi.org/10.1007/s00023-005-0205-0\">https://doi.org/10.1007/s00023-005-0205-0</a>","chicago":"Erdös, László, David Hasler, and Jan Solovej. “Existence of the D0-D4 Bound State: A Detailed Proof.” <i>Annales Henri Poincare</i>. Birkhäuser, 2005. <a href=\"https://doi.org/10.1007/s00023-005-0205-0\">https://doi.org/10.1007/s00023-005-0205-0</a>.","ista":"Erdös L, Hasler D, Solovej J. 2005. Existence of the D0-D4 bound state: A detailed proof. Annales Henri Poincare. 6(2), 247–267.","mla":"Erdös, László, et al. “Existence of the D0-D4 Bound State: A Detailed Proof.” <i>Annales Henri Poincare</i>, vol. 6, no. 2, Birkhäuser, 2005, pp. 247–67, doi:<a href=\"https://doi.org/10.1007/s00023-005-0205-0\">10.1007/s00023-005-0205-0</a>.","short":"L. Erdös, D. Hasler, J. Solovej, Annales Henri Poincare 6 (2005) 247–267."},"intvolume":"         6","quality_controlled":0,"date_published":"2005-04-01T00:00:00Z","year":"2005","volume":6,"publication":"Annales Henri Poincare","publisher":"Birkhäuser"},{"volume":17,"publication":"Reviews in Mathematical Physics","publisher":"World Scientific Publishing","type":"journal_article","extern":1,"day":"01","doi":"10.1142/S0129055X0500242X","abstract":[{"text":"We study the long time evolution of a quantum particle interacting with a random potential in the Boltzmann-Grad low density limit. We prove that the phase space density of the quantum evolution defined through the Husimi function converges weakly to a linear Boltzmann equation. The Boltzmann collision kernel is given by the full quantum scattering cross-section of the obstacle potential.","lang":"eng"}],"citation":{"mla":"Eng, David, and László Erdös. “The Linear Boltzmann Equation as the Low Density Limit of a Random Schrödinger Equation.” <i>Reviews in Mathematical Physics</i>, vol. 17, no. 6, World Scientific Publishing, 2005, pp. 669–743, doi:<a href=\"https://doi.org/10.1142/S0129055X0500242X\">10.1142/S0129055X0500242X</a>.","chicago":"Eng, David, and László Erdös. “The Linear Boltzmann Equation as the Low Density Limit of a Random Schrödinger Equation.” <i>Reviews in Mathematical Physics</i>. World Scientific Publishing, 2005. <a href=\"https://doi.org/10.1142/S0129055X0500242X\">https://doi.org/10.1142/S0129055X0500242X</a>.","ista":"Eng D, Erdös L. 2005. The linear Boltzmann equation as the low density limit of a random Schrödinger equation. Reviews in Mathematical Physics. 17(6), 669–743.","ieee":"D. Eng and L. Erdös, “The linear Boltzmann equation as the low density limit of a random Schrödinger equation,” <i>Reviews in Mathematical Physics</i>, vol. 17, no. 6. World Scientific Publishing, pp. 669–743, 2005.","apa":"Eng, D., &#38; Erdös, L. (2005). The linear Boltzmann equation as the low density limit of a random Schrödinger equation. <i>Reviews in Mathematical Physics</i>. World Scientific Publishing. <a href=\"https://doi.org/10.1142/S0129055X0500242X\">https://doi.org/10.1142/S0129055X0500242X</a>","ama":"Eng D, Erdös L. The linear Boltzmann equation as the low density limit of a random Schrödinger equation. <i>Reviews in Mathematical Physics</i>. 2005;17(6):669-743. doi:<a href=\"https://doi.org/10.1142/S0129055X0500242X\">10.1142/S0129055X0500242X</a>","short":"D. Eng, L. Erdös, Reviews in Mathematical Physics 17 (2005) 669–743."},"intvolume":"        17","quality_controlled":0,"date_published":"2005-07-01T00:00:00Z","year":"2005","title":"The linear Boltzmann equation as the low density limit of a random Schrödinger equation","author":[{"full_name":"Eng, David","last_name":"Eng","first_name":"David"},{"full_name":"László Erdös","last_name":"Erdös","id":"4DBD5372-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5366-9603","first_name":"László"}],"page":"669 - 743","_id":"2744","date_updated":"2021-01-12T06:59:25Z","month":"07","status":"public","issue":"6","publication_status":"published","date_created":"2018-12-11T11:59:22Z","publist_id":"4148"},{"issue":"21","status":"public","month":"11","_id":"2788","date_updated":"2021-01-12T06:59:43Z","title":"Turbulence regeneration in pipe flow at moderate reynolds numbers","author":[{"first_name":"Björn","orcid":"0000-0003-2057-2754","full_name":"Björn Hof","last_name":"Hof","id":"3A374330-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Van Doorne","full_name":"van Doorne, Casimir W","first_name":"Casimir"},{"full_name":"Westerweel, Jerry","last_name":"Westerweel","first_name":"Jerry"},{"first_name":"Frans","last_name":"Nieuwstadt","full_name":"Nieuwstadt, Frans T"}],"date_created":"2018-12-11T11:59:36Z","publist_id":"4101","publication_status":"published","publisher":"American Physical Society","publication":"Physical Review Letters","volume":95,"year":"2005","intvolume":"        95","quality_controlled":0,"date_published":"2005-11-17T00:00:00Z","type":"journal_article","abstract":[{"text":"We present the results of an experimental investigation into the nature and structure of turbulent pipe flow at moderate Reynolds numbers. A turbulence regeneration mechanism is identified which sustains a symmetric traveling wave within the flow. The periodicity of the mechanism allows comparison to the wavelength of numerically observed exact traveling wave solutions and close agreement is found. The advection speed of the upstream turbulence laminar interface in the experimental flow is observed to form a lower bound on the phase velocities of the exact traveling wave solutions. Overall our observations suggest that the dynamics of the turbulent flow at moderate Reynolds numbers are governed by unstable nonlinear traveling waves.","lang":"eng"}],"doi":"10.1103/PhysRevLett.95.214502","day":"17","extern":1,"citation":{"apa":"Hof, B., Van Doorne, C., Westerweel, J., &#38; Nieuwstadt, F. (2005). Turbulence regeneration in pipe flow at moderate reynolds numbers. <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevLett.95.214502\">https://doi.org/10.1103/PhysRevLett.95.214502</a>","ama":"Hof B, Van Doorne C, Westerweel J, Nieuwstadt F. Turbulence regeneration in pipe flow at moderate reynolds numbers. <i>Physical Review Letters</i>. 2005;95(21). doi:<a href=\"https://doi.org/10.1103/PhysRevLett.95.214502\">10.1103/PhysRevLett.95.214502</a>","ieee":"B. Hof, C. Van Doorne, J. Westerweel, and F. Nieuwstadt, “Turbulence regeneration in pipe flow at moderate reynolds numbers,” <i>Physical Review Letters</i>, vol. 95, no. 21. American Physical Society, 2005.","mla":"Hof, Björn, et al. “Turbulence Regeneration in Pipe Flow at Moderate Reynolds Numbers.” <i>Physical Review Letters</i>, vol. 95, no. 21, American Physical Society, 2005, doi:<a href=\"https://doi.org/10.1103/PhysRevLett.95.214502\">10.1103/PhysRevLett.95.214502</a>.","chicago":"Hof, Björn, Casimir Van Doorne, Jerry Westerweel, and Frans Nieuwstadt. “Turbulence Regeneration in Pipe Flow at Moderate Reynolds Numbers.” <i>Physical Review Letters</i>. American Physical Society, 2005. <a href=\"https://doi.org/10.1103/PhysRevLett.95.214502\">https://doi.org/10.1103/PhysRevLett.95.214502</a>.","ista":"Hof B, Van Doorne C, Westerweel J, Nieuwstadt F. 2005. Turbulence regeneration in pipe flow at moderate reynolds numbers. Physical Review Letters. 95(21).","short":"B. Hof, C. Van Doorne, J. Westerweel, F. Nieuwstadt, Physical Review Letters 95 (2005)."}},{"year":"2005","day":"19","type":"journal_article","abstract":[{"lang":"eng","text":"Transitional pipe flow is investigated in two different experimental set-ups. In the first the stability threshold and the initial growth of localized perturbations are studied. Good agreement is found with an earlier investigation of the transition threshold. The measurement technique applied in the last part of this study allows the reconstruction of the streamwise vorticity in a turbulent puff."}],"doi":"10.1007/1-4020-4049-0_12","extern":1,"citation":{"mla":"Hof, Björn. “Transition to Turbulence in Pipe Flow.” <i>Fluid Mechanics and Its Applications</i>, vol. 77, Springer, 2005, pp. 221–31, doi:<a href=\"https://doi.org/10.1007/1-4020-4049-0_12\">10.1007/1-4020-4049-0_12</a>.","chicago":"Hof, Björn. “Transition to Turbulence in Pipe Flow.” <i>Fluid Mechanics and Its Applications</i>. Springer, 2005. <a href=\"https://doi.org/10.1007/1-4020-4049-0_12\">https://doi.org/10.1007/1-4020-4049-0_12</a>.","ista":"Hof B. 2005. Transition to turbulence in pipe flow. Fluid Mechanics and its Applications. 77, 221–231.","ama":"Hof B. Transition to turbulence in pipe flow. <i>Fluid Mechanics and its Applications</i>. 2005;77:221-231. doi:<a href=\"https://doi.org/10.1007/1-4020-4049-0_12\">10.1007/1-4020-4049-0_12</a>","ieee":"B. Hof, “Transition to turbulence in pipe flow,” <i>Fluid Mechanics and its Applications</i>, vol. 77. Springer, pp. 221–231, 2005.","apa":"Hof, B. (2005). Transition to turbulence in pipe flow. <i>Fluid Mechanics and Its Applications</i>. Springer. <a href=\"https://doi.org/10.1007/1-4020-4049-0_12\">https://doi.org/10.1007/1-4020-4049-0_12</a>","short":"B. Hof, Fluid Mechanics and Its Applications 77 (2005) 221–231."},"intvolume":"        77","quality_controlled":0,"date_published":"2005-09-19T00:00:00Z","publisher":"Springer","volume":77,"publication":"Fluid Mechanics and its Applications","publication_status":"published","date_created":"2018-12-11T11:59:36Z","publist_id":"4100","month":"09","status":"public","title":"Transition to turbulence in pipe flow","author":[{"orcid":"0000-0003-2057-2754","id":"3A374330-F248-11E8-B48F-1D18A9856A87","full_name":"Björn Hof","last_name":"Hof","first_name":"Björn"}],"_id":"2789","page":"221 - 231","date_updated":"2021-01-12T06:59:43Z"},{"year":"2005","date_published":"2005-12-25T00:00:00Z","intvolume":"       545","quality_controlled":0,"citation":{"ama":"Hof B, Juel A, Mullin T. Magnetohydrodynamic damping of oscillations in low-Prandtl-number convection. <i>Journal of Fluid Mechanics</i>. 2005;545:193-201. doi:<a href=\"https://doi.org/10.1017/S0022112005006762\">10.1017/S0022112005006762</a>","apa":"Hof, B., Juel, A., &#38; Mullin, T. (2005). Magnetohydrodynamic damping of oscillations in low-Prandtl-number convection. <i>Journal of Fluid Mechanics</i>. Cambridge University Press. <a href=\"https://doi.org/10.1017/S0022112005006762\">https://doi.org/10.1017/S0022112005006762</a>","ieee":"B. Hof, A. Juel, and T. Mullin, “Magnetohydrodynamic damping of oscillations in low-Prandtl-number convection,” <i>Journal of Fluid Mechanics</i>, vol. 545. Cambridge University Press, pp. 193–201, 2005.","chicago":"Hof, Björn, Anne Juel, and Tom Mullin. “Magnetohydrodynamic Damping of Oscillations in Low-Prandtl-Number Convection.” <i>Journal of Fluid Mechanics</i>. Cambridge University Press, 2005. <a href=\"https://doi.org/10.1017/S0022112005006762\">https://doi.org/10.1017/S0022112005006762</a>.","ista":"Hof B, Juel A, Mullin T. 2005. Magnetohydrodynamic damping of oscillations in low-Prandtl-number convection. Journal of Fluid Mechanics. 545, 193–201.","mla":"Hof, Björn, et al. “Magnetohydrodynamic Damping of Oscillations in Low-Prandtl-Number Convection.” <i>Journal of Fluid Mechanics</i>, vol. 545, Cambridge University Press, 2005, pp. 193–201, doi:<a href=\"https://doi.org/10.1017/S0022112005006762\">10.1017/S0022112005006762</a>.","short":"B. Hof, A. Juel, T. Mullin, Journal of Fluid Mechanics 545 (2005) 193–201."},"type":"journal_article","day":"25","extern":1,"doi":"10.1017/S0022112005006762","abstract":[{"lang":"eng","text":"We present the results of an experimental investigation of the effect of a magnetic field on the stability of convection in a liquid metal. A rectangular container of gallium is subjected to a horizontal temperature gradient and a uniform magnetic field is applied separately in three directions. The magnetic field suppresses the oscillation most effectively when it is applied in the vertical direction and is least efficient when applied in the direction of the temperature gradient. The critical temperature difference required for the onset of oscillations is found to scale exponentially with the magnitude of the magnetic field for all three orientations. Comparisons are made with available theory and qualitative differences are discussed."}],"publisher":"Cambridge University Press","publication":"Journal of Fluid Mechanics","volume":545,"publist_id":"4099","date_created":"2018-12-11T11:59:37Z","publication_status":"published","month":"12","status":"public","_id":"2790","date_updated":"2021-01-12T06:59:44Z","page":"193 - 201","author":[{"first_name":"Björn","last_name":"Hof","full_name":"Björn Hof","id":"3A374330-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-2057-2754"},{"last_name":"Juel","full_name":"Juel, Anne","first_name":"Anne"},{"first_name":"Tom","last_name":"Mullin","full_name":"Mullin, Tom P"}],"title":"Magnetohydrodynamic damping of oscillations in low-Prandtl-number convection"},{"type":"journal_article","abstract":[{"text":"The plant hormone auxin elicits many specific context-dependent developmental responses. Auxin promotes degradation of Aux/IAA proteins that prevent transcription factors of the auxin response factor (ARF) family from regulating auxin-responsive target genes. Aux/IAAs and ARFs are represented by large gene families in Arabidopsis. Here we show that stabilization of BDL/IAA12 or its sister protein IAA13 prevents MP/ARF5-dependent embryonic root formation whereas stabilized SHY2/IAA3 interferes with seedling growth. Although both bdl and shy2-2 proteins inhibited MP/ARF5-dependent reporter gene activation, shy2-2 was much less efficient than bdl to interfere with embryonic root initiation when expressed from the BDL promoter. Similarly, MP was much more efficient than ARF16 in this process. When expressed from the SHY2 promoter, both shy2-2 and bdl inhibited cell elongation and auxin-induced gene expression in the seedling hypocotyl. By contrast, gravitropism and auxin-induced gene expression in the root, which were promoted by functionally redundant NPH4/ARF7 and ARF19 proteins, were inhibited by shy2-2, but not by bdl protein. Our results suggest that auxin signals are converted into specific responses by matching pairs of coexpressed ARF and Aux/IAA proteins.","lang":"eng"}],"extern":1,"doi":"10.1038/sj.emboj.7600659","day":"18","citation":{"ista":"Weijers D, Benková E, Jäger K, Schlereth A, Hamann T, Kientz M, Wilmoth J, Reed J, Jürgens G. 2005. Developmental specificity of auxin response by pairs of ARF and Aux/IAA transcriptional regulators. EMBO Journal. 24(10), 1874–1885.","chicago":"Weijers, Dolf, Eva Benková, Katja Jäger, Alexandra Schlereth, Thorsten Hamann, Marika Kientz, Jill Wilmoth, Jason Reed, and Gerd Jürgens. “Developmental Specificity of Auxin Response by Pairs of ARF and Aux/IAA Transcriptional Regulators.” <i>EMBO Journal</i>. Wiley-Blackwell, 2005. <a href=\"https://doi.org/10.1038/sj.emboj.7600659\">https://doi.org/10.1038/sj.emboj.7600659</a>.","mla":"Weijers, Dolf, et al. “Developmental Specificity of Auxin Response by Pairs of ARF and Aux/IAA Transcriptional Regulators.” <i>EMBO Journal</i>, vol. 24, no. 10, Wiley-Blackwell, 2005, pp. 1874–85, doi:<a href=\"https://doi.org/10.1038/sj.emboj.7600659\">10.1038/sj.emboj.7600659</a>.","ama":"Weijers D, Benková E, Jäger K, et al. Developmental specificity of auxin response by pairs of ARF and Aux/IAA transcriptional regulators. <i>EMBO Journal</i>. 2005;24(10):1874-1885. doi:<a href=\"https://doi.org/10.1038/sj.emboj.7600659\">10.1038/sj.emboj.7600659</a>","ieee":"D. Weijers <i>et al.</i>, “Developmental specificity of auxin response by pairs of ARF and Aux/IAA transcriptional regulators,” <i>EMBO Journal</i>, vol. 24, no. 10. Wiley-Blackwell, pp. 1874–1885, 2005.","apa":"Weijers, D., Benková, E., Jäger, K., Schlereth, A., Hamann, T., Kientz, M., … Jürgens, G. (2005). Developmental specificity of auxin response by pairs of ARF and Aux/IAA transcriptional regulators. <i>EMBO Journal</i>. Wiley-Blackwell. <a href=\"https://doi.org/10.1038/sj.emboj.7600659\">https://doi.org/10.1038/sj.emboj.7600659</a>","short":"D. Weijers, E. Benková, K. Jäger, A. Schlereth, T. Hamann, M. Kientz, J. Wilmoth, J. Reed, G. Jürgens, EMBO Journal 24 (2005) 1874–1885."},"oa":1,"intvolume":"        24","quality_controlled":0,"date_published":"2005-05-18T00:00:00Z","year":"2005","volume":24,"publication":"EMBO Journal","publisher":"Wiley-Blackwell","main_file_link":[{"open_access":"1","url":"http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1142592/"}],"publication_status":"published","date_created":"2018-12-11T12:00:01Z","publist_id":"3918","title":"Developmental specificity of auxin response by pairs of ARF and Aux/IAA transcriptional regulators","author":[{"full_name":"Weijers, Dolf","last_name":"Weijers","first_name":"Dolf"},{"orcid":"0000-0002-8510-9739","id":"38F4F166-F248-11E8-B48F-1D18A9856A87","last_name":"Benková","full_name":"Eva Benková","first_name":"Eva"},{"full_name":"Jäger, Katja E","last_name":"Jäger","first_name":"Katja"},{"first_name":"Alexandra","full_name":"Schlereth, Alexandra","last_name":"Schlereth"},{"first_name":"Thorsten","full_name":"Hamann, Thorsten","last_name":"Hamann"},{"first_name":"Marika","full_name":"Kientz, Marika","last_name":"Kientz"},{"full_name":"Wilmoth, Jill C","last_name":"Wilmoth","first_name":"Jill"},{"last_name":"Reed","full_name":"Reed, Jason W","first_name":"Jason"},{"last_name":"Jürgens","full_name":"Jürgens, Gerd","first_name":"Gerd"}],"_id":"2867","page":"1874 - 1885","date_updated":"2021-01-12T07:00:22Z","status":"public","month":"05","issue":"10"},{"publication_status":"published","date_created":"2018-12-11T12:00:12Z","publist_id":"3863","status":"public","month":"12","issue":"1","title":"Immunological self tolerance: Lessons from mathematical modeling","author":[{"first_name":"Jorge","last_name":"Carneiro","full_name":"Carneiro, Jorge"},{"first_name":"Tiago","orcid":"0000-0003-2361-3953","full_name":"Tiago Paixao","last_name":"Paixao","id":"2C5658E6-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Dejan","full_name":"Milutinovic, Dejan","last_name":"Milutinovic"},{"first_name":"João","full_name":"Sousa, João","last_name":"Sousa"},{"full_name":"Leon, Kalet","last_name":"Leon","first_name":"Kalet"},{"last_name":"Gardner","full_name":"Gardner, Rui","first_name":"Rui"},{"last_name":"Faro","full_name":"Faro, Jose","first_name":"Jose"}],"_id":"2895","date_updated":"2021-01-12T07:00:32Z","page":"77 - 100","year":"2005","acknowledgement":"The work was financially supported by Fundação para a Ciência e Tecnologia: grants  P/BIA/10094/1998,  POCTI/36413/99,  and  POCTI/MGI/46477/2002; and fellowships to JF (Praxis/BCC/18972/98), JS (BD/13546/97), KL (SFRH/BPD+/1157/2002), DM (SFRH/BD/2960/2000) and TP (SFRH/BD/10550/2002).","type":"journal_article","abstract":[{"text":"One of the fundamental properties of the immune system is its capacity to avoid autoimmune diseases. The mechanism underlying this process, known as self-tolerance, is hitherto unresolved but seems to involve the control of clonal expansion of autoreactive lymphocytes. This article reviews mathematical modeling of self-tolerance, addressing two specific hypotheses. The first hypothesis posits that self-tolerance is mediated by tuning of activation thresholds, which makes autoreactive T lymphocytes reversibly &quot;anergic&quot; and unable to proliferate. The second hypothesis posits that the proliferation of autoreactive T lymphocytes is instead controlled by specific regulatory T lymphocytes. Models representing the population dynamics of autoreactive T lymphocytes according to these two hypotheses were derived. For each model we identified how cell density affects tolerance, and predicted the corresponding phase spaces and bifurcations. We show that the simple induction of proliferative anergy, as modeled here, has a density dependence that is only partially compatible with adoptive transfers of tolerance, and that the models of tolerance mediated by specific regulatory T cells are closer to the observations.","lang":"eng"}],"doi":"10.1016/j.cam.2004.10.025","day":"01","extern":1,"citation":{"short":"J. Carneiro, T. Paixao, D. Milutinovic, J. Sousa, K. Leon, R. Gardner, J. Faro, Journal of Computational and Applied Mathematics 184 (2005) 77–100.","ama":"Carneiro J, Paixao T, Milutinovic D, et al. Immunological self tolerance: Lessons from mathematical modeling. <i>Journal of Computational and Applied Mathematics</i>. 2005;184(1):77-100. doi:<a href=\"https://doi.org/10.1016/j.cam.2004.10.025\">10.1016/j.cam.2004.10.025</a>","ieee":"J. Carneiro <i>et al.</i>, “Immunological self tolerance: Lessons from mathematical modeling,” <i>Journal of Computational and Applied Mathematics</i>, vol. 184, no. 1. Elsevier, pp. 77–100, 2005.","apa":"Carneiro, J., Paixao, T., Milutinovic, D., Sousa, J., Leon, K., Gardner, R., &#38; Faro, J. (2005). Immunological self tolerance: Lessons from mathematical modeling. <i>Journal of Computational and Applied Mathematics</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.cam.2004.10.025\">https://doi.org/10.1016/j.cam.2004.10.025</a>","chicago":"Carneiro, Jorge, Tiago Paixao, Dejan Milutinovic, João Sousa, Kalet Leon, Rui Gardner, and Jose Faro. “Immunological Self Tolerance: Lessons from Mathematical Modeling.” <i>Journal of Computational and Applied Mathematics</i>. Elsevier, 2005. <a href=\"https://doi.org/10.1016/j.cam.2004.10.025\">https://doi.org/10.1016/j.cam.2004.10.025</a>.","ista":"Carneiro J, Paixao T, Milutinovic D, Sousa J, Leon K, Gardner R, Faro J. 2005. Immunological self tolerance: Lessons from mathematical modeling. Journal of Computational and Applied Mathematics. 184(1), 77–100.","mla":"Carneiro, Jorge, et al. “Immunological Self Tolerance: Lessons from Mathematical Modeling.” <i>Journal of Computational and Applied Mathematics</i>, vol. 184, no. 1, Elsevier, 2005, pp. 77–100, doi:<a href=\"https://doi.org/10.1016/j.cam.2004.10.025\">10.1016/j.cam.2004.10.025</a>."},"intvolume":"       184","quality_controlled":0,"date_published":"2005-12-01T00:00:00Z","publisher":"Elsevier","volume":184,"publication":"Journal of Computational and Applied Mathematics"},{"publication":"Protoplasma","volume":226,"publisher":"Springer","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","date_published":"2005-10-01T00:00:00Z","intvolume":"       226","quality_controlled":"1","citation":{"short":"P. Dhonukshe, J. Kleine Vehn, J. Friml, Protoplasma 226 (2005) 67–73.","apa":"Dhonukshe, P., Kleine Vehn, J., &#38; Friml, J. (2005). Cell polarity, auxin transport and cytoskeleton mediated division planes: Who comes first? <i>Protoplasma</i>. Springer. <a href=\"https://doi.org/10.1007/s00709-005-0104-8\">https://doi.org/10.1007/s00709-005-0104-8</a>","ama":"Dhonukshe P, Kleine Vehn J, Friml J. Cell polarity, auxin transport and cytoskeleton mediated division planes: Who comes first? <i>Protoplasma</i>. 2005;226(1-2):67-73. doi:<a href=\"https://doi.org/10.1007/s00709-005-0104-8\">10.1007/s00709-005-0104-8</a>","ieee":"P. Dhonukshe, J. Kleine Vehn, and J. Friml, “Cell polarity, auxin transport and cytoskeleton mediated division planes: Who comes first?,” <i>Protoplasma</i>, vol. 226, no. 1–2. Springer, pp. 67–73, 2005.","mla":"Dhonukshe, Pankaj, et al. “Cell Polarity, Auxin Transport and Cytoskeleton Mediated Division Planes: Who Comes First?” <i>Protoplasma</i>, vol. 226, no. 1–2, Springer, 2005, pp. 67–73, doi:<a href=\"https://doi.org/10.1007/s00709-005-0104-8\">10.1007/s00709-005-0104-8</a>.","chicago":"Dhonukshe, Pankaj, Jürgen Kleine Vehn, and Jiří Friml. “Cell Polarity, Auxin Transport and Cytoskeleton Mediated Division Planes: Who Comes First?” <i>Protoplasma</i>. Springer, 2005. <a href=\"https://doi.org/10.1007/s00709-005-0104-8\">https://doi.org/10.1007/s00709-005-0104-8</a>.","ista":"Dhonukshe P, Kleine Vehn J, Friml J. 2005. Cell polarity, auxin transport and cytoskeleton mediated division planes: Who comes first? Protoplasma. 226(1–2), 67–73."},"doi":"10.1007/s00709-005-0104-8","type":"journal_article","day":"01","extern":"1","abstract":[{"text":"In plants, cell polarity is an issue more recurring than in other systems, because plants, due to their adaptive and flexible development, often change cell polarity postembryonically according to intrinsic cues and demands of the environment. Recent findings on the directional movement of the plant signalling molecule auxin provide a unique connection between individual cell polarity and the establishment of polarity at the tissue, organ, and whole-plant levels. Decisions about the subcellular polar targeting of PIN auxin transport components determine the direction of auxin flow between cells and consequently mediate multiple developmental events. In addition, mutations or chemical interference with PIN-based auxin transport result in abnormal cell divisions. Thus, the complicated links between cell polarity establishment, auxin transport, cytoskeleton, and oriented cell divisions now begin to emerge. Here we review the available literature on the issues of cell polarity in both plants and animals to extend our understanding on the generation, maintenance, and transmission of cell polarity in plants.","lang":"eng"}],"year":"2005","page":"67 - 73","_id":"3000","date_updated":"2021-01-12T07:40:22Z","title":"Cell polarity, auxin transport and cytoskeleton mediated division planes: Who comes first?","author":[{"first_name":"Pankaj","last_name":"Dhonukshe","full_name":"Dhonukshe, Pankaj"},{"first_name":"Jürgen","last_name":"Kleine Vehn","full_name":"Kleine Vehn, Jürgen"},{"id":"4159519E-F248-11E8-B48F-1D18A9856A87","last_name":"Friml","full_name":"Friml, Jirí","orcid":"0000-0002-8302-7596","first_name":"Jirí"}],"issue":"1-2","language":[{"iso":"eng"}],"status":"public","month":"10","oa_version":"None","publist_id":"3701","date_created":"2018-12-11T12:00:47Z","publication_status":"published"},{"volume":435,"publication":"Nature","publisher":"Nature Publishing Group","abstract":[{"text":"One of the mechanisms by which signalling molecules regulate cellular behaviour is modulating subcellular protein translocation. This mode of regulation is often based on specialized vesicle trafficking, termed constitutive cycling, which consists of repeated internalization and recycling of proteins to and from the plasma membrane. No such mechanism of hormone action has been shown in plants although several proteins, including the PIN auxin efflux facilitators, exhibit constitutive cycling. Here we show that a major regulator of plant development, auxin, inhibits endocytosis. This effect is specific to biologically active auxins and requires activity of the Calossin-like protein BIG. By inhibiting the internalization step of PIN constitutive cycling, auxin increases levels of PINs at the plasma membrane. Concomitantly, auxin promotes its own efflux from cells by a vesicle-trafficking-dependent mechanism. Furthermore, asymmetric auxin translocation during gravitropism is correlated with decreased PIN internalization. Our data imply a previously undescribed mode of plant hormone action: by modulating PIN protein trafficking, auxin regulates PIN abundance and activity at the cell surface, providing a mechanism for the feedback regulation of auxin transport.","lang":"eng"}],"type":"journal_article","doi":"10.1038/nature03633","extern":1,"day":"30","citation":{"ista":"Paciorek T, Zažímalová E, Ruthardt N, Petrášek J, Stierhof Y, Kleine Vehn J, Morris D, Emans N, Jürgens G, Geldner N, Friml J. 2005. Auxin inhibits endocytosis and promotes its own efflux from cells. Nature. 435(7046), 1251–1256.","chicago":"Paciorek, Tomasz, Eva Zažímalová, Nadia Ruthardt, Jan Petrášek, York Stierhof, Jürgen Kleine Vehn, David Morris, et al. “Auxin Inhibits Endocytosis and Promotes Its Own Efflux from Cells.” <i>Nature</i>. Nature Publishing Group, 2005. <a href=\"https://doi.org/10.1038/nature03633\">https://doi.org/10.1038/nature03633</a>.","mla":"Paciorek, Tomasz, et al. “Auxin Inhibits Endocytosis and Promotes Its Own Efflux from Cells.” <i>Nature</i>, vol. 435, no. 7046, Nature Publishing Group, 2005, pp. 1251–56, doi:<a href=\"https://doi.org/10.1038/nature03633\">10.1038/nature03633</a>.","ama":"Paciorek T, Zažímalová E, Ruthardt N, et al. Auxin inhibits endocytosis and promotes its own efflux from cells. <i>Nature</i>. 2005;435(7046):1251-1256. doi:<a href=\"https://doi.org/10.1038/nature03633\">10.1038/nature03633</a>","apa":"Paciorek, T., Zažímalová, E., Ruthardt, N., Petrášek, J., Stierhof, Y., Kleine Vehn, J., … Friml, J. (2005). Auxin inhibits endocytosis and promotes its own efflux from cells. <i>Nature</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/nature03633\">https://doi.org/10.1038/nature03633</a>","ieee":"T. Paciorek <i>et al.</i>, “Auxin inhibits endocytosis and promotes its own efflux from cells,” <i>Nature</i>, vol. 435, no. 7046. Nature Publishing Group, pp. 1251–1256, 2005.","short":"T. Paciorek, E. Zažímalová, N. Ruthardt, J. Petrášek, Y. Stierhof, J. Kleine Vehn, D. Morris, N. Emans, G. Jürgens, N. Geldner, J. Friml, Nature 435 (2005) 1251–1256."},"quality_controlled":0,"intvolume":"       435","date_published":"2005-06-30T00:00:00Z","year":"2005","title":"Auxin inhibits endocytosis and promotes its own efflux from cells","author":[{"full_name":"Paciorek, Tomasz","last_name":"Paciorek","first_name":"Tomasz"},{"first_name":"Eva","last_name":"Zažímalová","full_name":"Zažímalová, Eva"},{"last_name":"Ruthardt","full_name":"Ruthardt, Nadia","first_name":"Nadia"},{"first_name":"Jan","full_name":"Petrášek, Jan","last_name":"Petrášek"},{"full_name":"Stierhof, York-Dieter","last_name":"Stierhof","first_name":"York"},{"last_name":"Kleine Vehn","full_name":"Kleine-Vehn, Jürgen","first_name":"Jürgen"},{"full_name":"Morris, David A","last_name":"Morris","first_name":"David"},{"last_name":"Emans","full_name":"Emans, Neil","first_name":"Neil"},{"full_name":"Jürgens, Gerd","last_name":"Jürgens","first_name":"Gerd"},{"first_name":"Niko","full_name":"Geldner, Niko","last_name":"Geldner"},{"orcid":"0000-0002-8302-7596","last_name":"Friml","full_name":"Jirí Friml","id":"4159519E-F248-11E8-B48F-1D18A9856A87","first_name":"Jirí"}],"date_updated":"2021-01-12T07:40:23Z","_id":"3001","page":"1251 - 1256","status":"public","month":"06","issue":"7046","publication_status":"published","date_created":"2018-12-11T12:00:47Z","publist_id":"3702"},{"publist_id":"3700","date_created":"2018-12-11T12:00:48Z","publication_status":"published","_id":"3003","date_updated":"2021-01-12T07:40:23Z","page":"4521 - 4531","author":[{"first_name":"Anne","last_name":"Vieten","full_name":"Vieten, Anne"},{"first_name":"Steffen","full_name":"Vanneste, Steffen","last_name":"Vanneste"},{"last_name":"Wiśniewska","full_name":"Wiśniewska, Justyna","first_name":"Justyna"},{"id":"38F4F166-F248-11E8-B48F-1D18A9856A87","full_name":"Eva Benková","last_name":"Benková","orcid":"0000-0002-8510-9739","first_name":"Eva"},{"first_name":"René","full_name":"Benjamins, René","last_name":"Benjamins"},{"first_name":"Tom","full_name":"Beeckman, Tom","last_name":"Beeckman"},{"first_name":"Christian","full_name":"Luschnig, Christian","last_name":"Luschnig"},{"last_name":"Friml","full_name":"Jirí Friml","id":"4159519E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8302-7596","first_name":"Jirí"}],"title":"Functional redundancy of PIN proteins is accompanied by auxin-dependent cross-regulation of PIN expression","issue":"20","status":"public","month":"10","date_published":"2005-10-01T00:00:00Z","quality_controlled":0,"intvolume":"       132","citation":{"ieee":"A. Vieten <i>et al.</i>, “Functional redundancy of PIN proteins is accompanied by auxin-dependent cross-regulation of PIN expression,” <i>Development</i>, vol. 132, no. 20. Company of Biologists, pp. 4521–4531, 2005.","ama":"Vieten A, Vanneste S, Wiśniewska J, et al. Functional redundancy of PIN proteins is accompanied by auxin-dependent cross-regulation of PIN expression. <i>Development</i>. 2005;132(20):4521-4531. doi:<a href=\"https://doi.org/10.1242/dev.02027\">10.1242/dev.02027</a>","apa":"Vieten, A., Vanneste, S., Wiśniewska, J., Benková, E., Benjamins, R., Beeckman, T., … Friml, J. (2005). Functional redundancy of PIN proteins is accompanied by auxin-dependent cross-regulation of PIN expression. <i>Development</i>. Company of Biologists. <a href=\"https://doi.org/10.1242/dev.02027\">https://doi.org/10.1242/dev.02027</a>","mla":"Vieten, Anne, et al. “Functional Redundancy of PIN Proteins Is Accompanied by Auxin-Dependent Cross-Regulation of PIN Expression.” <i>Development</i>, vol. 132, no. 20, Company of Biologists, 2005, pp. 4521–31, doi:<a href=\"https://doi.org/10.1242/dev.02027\">10.1242/dev.02027</a>.","ista":"Vieten A, Vanneste S, Wiśniewska J, Benková E, Benjamins R, Beeckman T, Luschnig C, Friml J. 2005. Functional redundancy of PIN proteins is accompanied by auxin-dependent cross-regulation of PIN expression. Development. 132(20), 4521–4531.","chicago":"Vieten, Anne, Steffen Vanneste, Justyna Wiśniewska, Eva Benková, René Benjamins, Tom Beeckman, Christian Luschnig, and Jiří Friml. “Functional Redundancy of PIN Proteins Is Accompanied by Auxin-Dependent Cross-Regulation of PIN Expression.” <i>Development</i>. Company of Biologists, 2005. <a href=\"https://doi.org/10.1242/dev.02027\">https://doi.org/10.1242/dev.02027</a>.","short":"A. Vieten, S. Vanneste, J. Wiśniewska, E. Benková, R. Benjamins, T. Beeckman, C. Luschnig, J. Friml, Development 132 (2005) 4521–4531."},"abstract":[{"lang":"eng","text":"Plant development displays an exceptional plasticity and adaptability that involves the dynamic, asymmetric distribution of the phytohormone auxin. Polar auxin flow, which requires polarly localized transport facilitators of the PIN family, largely contributes to the establishment and maintenance of the auxin gradients. Functionally overlapping action of PIN proteins mediates multiple developmental processes, including embryo formation, organ development and tropisms. Here we show that PIN proteins exhibit synergistic interactions, which involve cross-regulation of PIN gene expression in pin mutants or plants with inhibited auxin transport. Auxin itself positively feeds back on PIN gene expression in a tissue-specific manner through an AUX/IAA-dependent signalling pathway. This regulatory switch is indicative of a mechanism by which the loss of a specific PIN protein is compensated for by auxin-dependent ectopic: expression of its homologues. The compensatory properties of the PIN-dependent transport network might enable the stabilization of auxin gradients and potentially contribute to the robustness of plant adaptive development."}],"day":"01","extern":1,"doi":"10.1242/dev.02027","type":"journal_article","year":"2005","publication":"Development","volume":132,"publisher":"Company of Biologists"},{"volume":17,"publication":"Plant Cell","publisher":"American Society of Plant Biologists","type":"journal_article","extern":1,"abstract":[{"lang":"eng","text":"Molecular mechanisms of pattern formation in the plant embryo are not well understood. Recent molecular and cellular studies, in conjunction with earlier microsurgical, physiological, and genetic work, are now starting to define the outlines of a model where gradients of the signaling molecule auxin play a central role in embryo patterning. It is relatively clear how these gradients are established and interpreted, but how they are maintained is still unresolved. Here, we have studied the contributions of auxin biosynthesis, conjugation, and transport pathways to the maintenance of embryonic auxin gradients. Auxin homeostasis in the embryo was manipulated by region-specific conditional expression of indoleacetic acid-tryptophan monooxygenase or indoleacetic acid-lysine synthetase, bacterial enzymes for auxin biosynthesis or conjugation. Neither manipulation of auxin biosynthesis nor of auxin conjugation interfered with auxin gradients and patterning in the embryo. This result suggests a compensatory mechanism for buffering auxin gradients in the embryo. Chemical and genetic inhibition revealed that auxin transport activity, in particular that of the PIN-FORMED1 (PIN1) and PIN4 proteins, is a major factor in the maintenance of these gradients."}],"doi":"10.1105/tpc.105.034637","day":"01","citation":{"ieee":"D. Weijers <i>et al.</i>, “Maintenance of embryonic auxin distribution for apical basal patterning by PIN FORMED dependent auxin transport in Arabidopsis,” <i>Plant Cell</i>, vol. 17, no. 9. American Society of Plant Biologists, pp. 2517–2526, 2005.","ama":"Weijers D, Sauer M, Meurette O, et al. Maintenance of embryonic auxin distribution for apical basal patterning by PIN FORMED dependent auxin transport in Arabidopsis. <i>Plant Cell</i>. 2005;17(9):2517-2526. doi:<a href=\"https://doi.org/10.1105/tpc.105.034637\">10.1105/tpc.105.034637</a>","apa":"Weijers, D., Sauer, M., Meurette, O., Friml, J., Ljung, K., Sandberg, G., … Offringa, R. (2005). Maintenance of embryonic auxin distribution for apical basal patterning by PIN FORMED dependent auxin transport in Arabidopsis. <i>Plant Cell</i>. American Society of Plant Biologists. <a href=\"https://doi.org/10.1105/tpc.105.034637\">https://doi.org/10.1105/tpc.105.034637</a>","ista":"Weijers D, Sauer M, Meurette O, Friml J, Ljung K, Sandberg G, Hooykaas P, Offringa R. 2005. Maintenance of embryonic auxin distribution for apical basal patterning by PIN FORMED dependent auxin transport in Arabidopsis. Plant Cell. 17(9), 2517–2526.","chicago":"Weijers, Dolf, Michael Sauer, Olivier Meurette, Jiří Friml, Karin Ljung, Göran Sandberg, Paul Hooykaas, and Remko Offringa. “Maintenance of Embryonic Auxin Distribution for Apical Basal Patterning by PIN FORMED Dependent Auxin Transport in Arabidopsis.” <i>Plant Cell</i>. American Society of Plant Biologists, 2005. <a href=\"https://doi.org/10.1105/tpc.105.034637\">https://doi.org/10.1105/tpc.105.034637</a>.","mla":"Weijers, Dolf, et al. “Maintenance of Embryonic Auxin Distribution for Apical Basal Patterning by PIN FORMED Dependent Auxin Transport in Arabidopsis.” <i>Plant Cell</i>, vol. 17, no. 9, American Society of Plant Biologists, 2005, pp. 2517–26, doi:<a href=\"https://doi.org/10.1105/tpc.105.034637\">10.1105/tpc.105.034637</a>.","short":"D. Weijers, M. Sauer, O. Meurette, J. Friml, K. Ljung, G. Sandberg, P. Hooykaas, R. Offringa, Plant Cell 17 (2005) 2517–2526."},"intvolume":"        17","quality_controlled":0,"date_published":"2005-07-01T00:00:00Z","year":"2005","title":"Maintenance of embryonic auxin distribution for apical basal patterning by PIN FORMED dependent auxin transport in Arabidopsis","author":[{"first_name":"Dolf","full_name":"Weijers, Dolf","last_name":"Weijers"},{"first_name":"Michael","last_name":"Sauer","full_name":"Sauer, Michael"},{"last_name":"Meurette","full_name":"Meurette, Olivier","first_name":"Olivier"},{"orcid":"0000-0002-8302-7596","id":"4159519E-F248-11E8-B48F-1D18A9856A87","full_name":"Jirí Friml","last_name":"Friml","first_name":"Jirí"},{"first_name":"Karin","last_name":"Ljung","full_name":"Ljung, Karin"},{"last_name":"Sandberg","full_name":"Sandberg, Göran","first_name":"Göran"},{"first_name":"Paul","last_name":"Hooykaas","full_name":"Hooykaas, Paul"},{"first_name":"Remko","last_name":"Offringa","full_name":"Offringa, Remko"}],"page":"2517 - 2526","_id":"3004","date_updated":"2021-01-12T07:40:24Z","status":"public","month":"07","issue":"9","publication_status":"published","date_created":"2018-12-11T12:00:48Z","publist_id":"3698"},{"publist_id":"3554","date_created":"2018-12-11T12:01:38Z","publication_status":"published","page":"26 - 31","_id":"3141","date_updated":"2021-01-12T07:41:21Z","author":[{"first_name":"Avital","full_name":"Rodal, Avital A","last_name":"Rodal"},{"first_name":"Olga","full_name":"Sokolova, Olga","last_name":"Sokolova"},{"last_name":"Robins","full_name":"Robins, Deborah B","first_name":"Deborah"},{"full_name":"Daugherty, Karen M","last_name":"Daugherty","first_name":"Karen"},{"id":"37B36620-F248-11E8-B48F-1D18A9856A87","full_name":"Simon Hippenmeyer","last_name":"Hippenmeyer","orcid":"0000-0003-2279-1061","first_name":"Simon"},{"full_name":"Riezman, Howard","last_name":"Riezman","first_name":"Howard"},{"first_name":"Nikolaus","full_name":"Grigorieff, Nikolaus","last_name":"Grigorieff"},{"first_name":"Bruce","last_name":"Goode","full_name":"Goode, Bruce L"}],"title":"Conformational changes in the Arp2 3 complex leading to actin nucleation","issue":"1","status":"public","month":"01","date_published":"2005-01-01T00:00:00Z","quality_controlled":0,"intvolume":"        12","citation":{"apa":"Rodal, A., Sokolova, O., Robins, D., Daugherty, K., Hippenmeyer, S., Riezman, H., … Goode, B. (2005). Conformational changes in the Arp2 3 complex leading to actin nucleation. <i>Nature Structural and Molecular Biology</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/nsmb870\">https://doi.org/10.1038/nsmb870</a>","ieee":"A. Rodal <i>et al.</i>, “Conformational changes in the Arp2 3 complex leading to actin nucleation,” <i>Nature Structural and Molecular Biology</i>, vol. 12, no. 1. Nature Publishing Group, pp. 26–31, 2005.","ama":"Rodal A, Sokolova O, Robins D, et al. Conformational changes in the Arp2 3 complex leading to actin nucleation. <i>Nature Structural and Molecular Biology</i>. 2005;12(1):26-31. doi:<a href=\"https://doi.org/10.1038/nsmb870\">10.1038/nsmb870</a>","mla":"Rodal, Avital, et al. “Conformational Changes in the Arp2 3 Complex Leading to Actin Nucleation.” <i>Nature Structural and Molecular Biology</i>, vol. 12, no. 1, Nature Publishing Group, 2005, pp. 26–31, doi:<a href=\"https://doi.org/10.1038/nsmb870\">10.1038/nsmb870</a>.","ista":"Rodal A, Sokolova O, Robins D, Daugherty K, Hippenmeyer S, Riezman H, Grigorieff N, Goode B. 2005. Conformational changes in the Arp2 3 complex leading to actin nucleation. Nature Structural and Molecular Biology. 12(1), 26–31.","chicago":"Rodal, Avital, Olga Sokolova, Deborah Robins, Karen Daugherty, Simon Hippenmeyer, Howard Riezman, Nikolaus Grigorieff, and Bruce Goode. “Conformational Changes in the Arp2 3 Complex Leading to Actin Nucleation.” <i>Nature Structural and Molecular Biology</i>. Nature Publishing Group, 2005. <a href=\"https://doi.org/10.1038/nsmb870\">https://doi.org/10.1038/nsmb870</a>.","short":"A. Rodal, O. Sokolova, D. Robins, K. Daugherty, S. Hippenmeyer, H. Riezman, N. Grigorieff, B. Goode, Nature Structural and Molecular Biology 12 (2005) 26–31."},"doi":"10.1038/nsmb870","abstract":[{"text":"The two actin-related subunits of the Arp2/3 complex, Arp2 and Arp3, are proposed to form a pseudo actin dimer that nucleates actin polymerization. However, in the crystal structure of the inactive complex, they are too far apart to form such a nucleus. Here, we show using EM that yeast and bovine Arp2/3 complexes exist in a distribution among open, intermediate and closed conformations. The crystal structure docks well into the open conformation. The activator WASp binds at the cleft between Arp2 and Arp3, and all WASp-bound complexes are closed. The inhibitor coronin binds near the p35 subunit, and all coronin-bound complexes are open. Activating and loss-of-function mutations in the p35 subunit skew conformational distribution in opposite directions, closed and open, respectively. We conclude that WASp stabilizes p35-dependent closure of the complex, holding Arp2 and Arp3 closer together to nucleate an actin filament.","lang":"eng"}],"day":"01","extern":1,"type":"journal_article","year":"2005","publication":"Nature Structural and Molecular Biology","volume":12,"publisher":"Nature Publishing Group"},{"publication":"PLoS Biology","volume":3,"publisher":"Public Library of Science","intvolume":"         3","quality_controlled":0,"date_published":"2005-05-01T00:00:00Z","extern":1,"type":"journal_article","day":"01","doi":"10.1371/journal.pbio.0030159","abstract":[{"text":"Two ETS transcription factors of the Pea3 subfamily are induced in subpopulations of dorsal root ganglion (DRG) sensory and spinal motor neurons by target-derived factors. Their expression controls late aspects of neuronal differentiation such as target invasion and branching. Here, we show that the late onset of ETS gene expression is an essential requirement for normal sensory neuron differentiation. We provide genetic evidence in the mouse that precocious ETS expression in DRG sensory neurons perturbs axonal projections, the acquisition of terminal differentiation markers, and their dependence on neurotrophic support. Together, our findings indicate that DRG sensory neurons exhibit a temporal developmental switch that can be revealed by distinct responses to ETS transcription factor signaling at sequential steps of neuronal maturation.","lang":"eng"}],"citation":{"chicago":"Hippenmeyer, Simon, Eline Vrieseling, Markus Sigrist, Thomas Portmann, Celia Laengle, David Ladle, and Silvia Arber. “A Developmental Switch in the Response of DRG Neurons to ETS Transcription Factor Signaling.” <i>PLoS Biology</i>. Public Library of Science, 2005. <a href=\"https://doi.org/10.1371/journal.pbio.0030159\">https://doi.org/10.1371/journal.pbio.0030159</a>.","ista":"Hippenmeyer S, Vrieseling E, Sigrist M, Portmann T, Laengle C, Ladle D, Arber S. 2005. A developmental switch in the response of DRG neurons to ETS transcription factor signaling. PLoS Biology. 3(5), 0878–0890.","mla":"Hippenmeyer, Simon, et al. “A Developmental Switch in the Response of DRG Neurons to ETS Transcription Factor Signaling.” <i>PLoS Biology</i>, vol. 3, no. 5, Public Library of Science, 2005, pp. 0878–90, doi:<a href=\"https://doi.org/10.1371/journal.pbio.0030159\">10.1371/journal.pbio.0030159</a>.","ama":"Hippenmeyer S, Vrieseling E, Sigrist M, et al. A developmental switch in the response of DRG neurons to ETS transcription factor signaling. <i>PLoS Biology</i>. 2005;3(5):0878-0890. doi:<a href=\"https://doi.org/10.1371/journal.pbio.0030159\">10.1371/journal.pbio.0030159</a>","ieee":"S. Hippenmeyer <i>et al.</i>, “A developmental switch in the response of DRG neurons to ETS transcription factor signaling,” <i>PLoS Biology</i>, vol. 3, no. 5. Public Library of Science, pp. 0878–0890, 2005.","apa":"Hippenmeyer, S., Vrieseling, E., Sigrist, M., Portmann, T., Laengle, C., Ladle, D., &#38; Arber, S. (2005). A developmental switch in the response of DRG neurons to ETS transcription factor signaling. <i>PLoS Biology</i>. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pbio.0030159\">https://doi.org/10.1371/journal.pbio.0030159</a>","short":"S. Hippenmeyer, E. Vrieseling, M. Sigrist, T. Portmann, C. Laengle, D. Ladle, S. Arber, PLoS Biology 3 (2005) 0878–0890."},"year":"2005","date_updated":"2021-01-12T07:41:21Z","_id":"3143","page":"0878 - 0890","title":"A developmental switch in the response of DRG neurons to ETS transcription factor signaling","author":[{"first_name":"Simon","full_name":"Simon Hippenmeyer","last_name":"Hippenmeyer","id":"37B36620-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-2279-1061"},{"full_name":"Vrieseling, Eline","last_name":"Vrieseling","first_name":"Eline"},{"last_name":"Sigrist","full_name":"Sigrist, Markus","first_name":"Markus"},{"full_name":"Portmann, Thomas","last_name":"Portmann","first_name":"Thomas"},{"first_name":"Celia","last_name":"Laengle","full_name":"Laengle, Celia"},{"full_name":"Ladle, David R","last_name":"Ladle","first_name":"David"},{"last_name":"Arber","full_name":"Arber, Silvia","first_name":"Silvia"}],"issue":"5","status":"public","month":"05","date_created":"2018-12-11T12:01:38Z","publist_id":"3552","publication_status":"published","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"}},{"intvolume":"         1","quality_controlled":0,"date_published":"2005-07-25T00:00:00Z","type":"conference","extern":1,"doi":"10.1109/CVPR.2005.130","day":"25","abstract":[{"text":"This paper addresses the novel problem of automatically synthesizing an output image from a large collection of different input images. The synthesized image, called a digital tapestry, can be viewed as a visual summary or a virtual 'thumbnail' of all the images in the input collection. The problem of creating the tapestry is cast as a multi-class labeling problem such that each region in the tapestry is constructed from input image blocks that are salient and such that neighboring blocks satisfy spatial compatibility. This is formulated using a Markov Random Field and optimized via the graph cut based expansion move algorithm. The standard expansion move algorithm can only handle energies with metric terms, while our energy contains non-metric (soft and hard) constraints. Therefore we propose two novel contributions. First, we extend the expansion move algorithm for energy functions with non-metric hard constraints. Secondly, we modify it for functions with &quot;almost&quot; metric soft terms, and show that it gives good results in practice. The proposed framework was tested on several consumer photograph collections, and the results are presented.","lang":"eng"}],"citation":{"short":"C. Rother, S. Kumar, V. Kolmogorov, A. Blake, in:, IEEE, 2005, pp. 589–596.","ama":"Rother C, Kumar S, Kolmogorov V, Blake A. Digital tapestry. In: Vol 1. IEEE; 2005:589-596. doi:<a href=\"https://doi.org/10.1109/CVPR.2005.130\">10.1109/CVPR.2005.130</a>","ieee":"C. Rother, S. Kumar, V. Kolmogorov, and A. Blake, “Digital tapestry,” presented at the CVPR: Computer Vision and Pattern Recognition, 2005, vol. 1, pp. 589–596.","apa":"Rother, C., Kumar, S., Kolmogorov, V., &#38; Blake, A. (2005). Digital tapestry (Vol. 1, pp. 589–596). Presented at the CVPR: Computer Vision and Pattern Recognition, IEEE. <a href=\"https://doi.org/10.1109/CVPR.2005.130\">https://doi.org/10.1109/CVPR.2005.130</a>","mla":"Rother, Carsten, et al. <i>Digital Tapestry</i>. Vol. 1, IEEE, 2005, pp. 589–96, doi:<a href=\"https://doi.org/10.1109/CVPR.2005.130\">10.1109/CVPR.2005.130</a>.","chicago":"Rother, Carsten, Sanjiv Kumar, Vladimir Kolmogorov, and Andrew Blake. “Digital Tapestry,” 1:589–96. IEEE, 2005. <a href=\"https://doi.org/10.1109/CVPR.2005.130\">https://doi.org/10.1109/CVPR.2005.130</a>.","ista":"Rother C, Kumar S, Kolmogorov V, Blake A. 2005. Digital tapestry. CVPR: Computer Vision and Pattern Recognition vol. 1, 589–596."},"year":"2005","volume":1,"main_file_link":[{"open_access":"0","url":"http://research.microsoft.com/en-us/um/people/ablake/papers/ablake/rother_cvpr05.pdf"}],"publisher":"IEEE","date_created":"2018-12-11T12:01:50Z","publist_id":"3503","publication_status":"published","conference":{"name":"CVPR: Computer Vision and Pattern Recognition"},"_id":"3175","date_updated":"2021-01-12T07:41:35Z","page":"589 - 596","author":[{"full_name":"Rother, Carsten","last_name":"Rother","first_name":"Carsten"},{"full_name":"Kumar, Sanjiv","last_name":"Kumar","first_name":"Sanjiv"},{"id":"3D50B0BA-F248-11E8-B48F-1D18A9856A87","full_name":"Vladimir Kolmogorov","last_name":"Kolmogorov","first_name":"Vladimir"},{"last_name":"Blake","full_name":"Blake, Andrew","first_name":"Andrew"}],"title":"Digital tapestry","status":"public","month":"07"},{"publisher":"IEEE","year":"2005","citation":{"mla":"Kolmogorov, Vladimir, et al. <i>Bi-Layer Segmentation of Binocular Stereo Video</i>. IEEE, 2005, pp. 1186–1186, doi:<a href=\"https://doi.org/10.1109/CVPR.2005.90\">10.1109/CVPR.2005.90</a>.","ista":"Kolmogorov V, Criminisi A, Blake A, Cross G, Rother C. 2005. Bi-layer segmentation of binocular stereo video. CVPR: Computer Vision and Pattern Recognition, 1186–1186.","chicago":"Kolmogorov, Vladimir, Antonio Criminisi, Andrew Blake, Geoffrey Cross, and Carsten Rother. “Bi-Layer Segmentation of Binocular Stereo Video,” 1186–1186. IEEE, 2005. <a href=\"https://doi.org/10.1109/CVPR.2005.90\">https://doi.org/10.1109/CVPR.2005.90</a>.","ama":"Kolmogorov V, Criminisi A, Blake A, Cross G, Rother C. Bi-layer segmentation of binocular stereo video. In: IEEE; 2005:1186-1186. doi:<a href=\"https://doi.org/10.1109/CVPR.2005.90\">10.1109/CVPR.2005.90</a>","ieee":"V. Kolmogorov, A. Criminisi, A. Blake, G. Cross, and C. Rother, “Bi-layer segmentation of binocular stereo video,” presented at the CVPR: Computer Vision and Pattern Recognition, 2005, pp. 1186–1186.","apa":"Kolmogorov, V., Criminisi, A., Blake, A., Cross, G., &#38; Rother, C. (2005). Bi-layer segmentation of binocular stereo video (pp. 1186–1186). Presented at the CVPR: Computer Vision and Pattern Recognition, IEEE. <a href=\"https://doi.org/10.1109/CVPR.2005.90\">https://doi.org/10.1109/CVPR.2005.90</a>","short":"V. Kolmogorov, A. Criminisi, A. Blake, G. Cross, C. Rother, in:, IEEE, 2005, pp. 1186–1186."},"doi":"10.1109/CVPR.2005.90","type":"conference","extern":1,"abstract":[{"lang":"eng","text":"This paper demonstrates the high quality, real-time segmentation techniques. We achieve real-time segmentation of foreground from background layers in stereo video sequences. Automatic separation of layers from colour/contrast or from stereo alone is known to be error-prone. Here, colour, contrast and stereo matching information are fused to infer layers accurately and efficiently. The first algorithm, layered dynamic programming (LDP), solves stereo in an extended 6-state space that represents both foreground/background layers and occluded regions. The stereo-match likelihood is then fused with a contrast-sensitive colour model that is learned on the fly, and stereo disparities are obtained by dynamic programming. The second algorithm, layered graph cut (LGC), does not directly solve stereo. Instead the stereo match likelihood is marginalised over foreground and background hypotheses, and fused with a contrast-sensitive colour model like the one used in LDP. Segmentation is solved efficiently by ternary graph cut. Both algorithms are evaluated with respect to ground truth data and found to have similar performance, substantially better than stereo or colour/contrast alone. However, their characteristics with respect to computational efficiency are rather different. The algorithms are demonstrated in the application of background substitution and shown to give good quality composite video output.\n"}],"day":"01","date_published":"2005-01-01T00:00:00Z","quality_controlled":0,"month":"01","status":"public","title":"Bi-layer segmentation of binocular stereo video","author":[{"first_name":"Vladimir","id":"3D50B0BA-F248-11E8-B48F-1D18A9856A87","last_name":"Kolmogorov","full_name":"Vladimir Kolmogorov"},{"last_name":"Criminisi","full_name":"Criminisi, Antonio","first_name":"Antonio"},{"full_name":"Blake, Andrew","last_name":"Blake","first_name":"Andrew"},{"full_name":"Cross, Geoffrey","last_name":"Cross","first_name":"Geoffrey"},{"first_name":"Carsten","full_name":"Rother, Carsten","last_name":"Rother"}],"date_updated":"2021-01-12T07:41:35Z","_id":"3176","page":"1186 - 1186","conference":{"name":"CVPR: Computer Vision and Pattern Recognition"},"publication_status":"published","publist_id":"3504","date_created":"2018-12-11T12:01:50Z"},{"page":"316 - 323","_id":"3181","date_updated":"2021-01-12T07:41:38Z","author":[{"id":"3D50B0BA-F248-11E8-B48F-1D18A9856A87","full_name":"Vladimir Kolmogorov","last_name":"Kolmogorov","first_name":"Vladimir"},{"last_name":"Wainwright","full_name":"Wainwright, Martin J","first_name":"Martin"}],"title":"On the optimality of tree reweighted max product message passing","month":"07","status":"public","publist_id":"3500","date_created":"2018-12-11T12:01:51Z","publication_status":"published","conference":{"name":"UAI: Uncertainty in Artificial Intelligence"},"main_file_link":[{"open_access":"0","url":"http://research.microsoft.com/pubs/67405/trw_opt_uai05.pdf"}],"publisher":"AUAI Press","date_published":"2005-07-01T00:00:00Z","quality_controlled":0,"citation":{"short":"V. Kolmogorov, M. Wainwright, in:, AUAI Press, 2005, pp. 316–323.","ama":"Kolmogorov V, Wainwright M. On the optimality of tree reweighted max product message passing. In: AUAI Press; 2005:316-323.","ieee":"V. Kolmogorov and M. Wainwright, “On the optimality of tree reweighted max product message passing,” presented at the UAI: Uncertainty in Artificial Intelligence, 2005, pp. 316–323.","apa":"Kolmogorov, V., &#38; Wainwright, M. (2005). On the optimality of tree reweighted max product message passing (pp. 316–323). Presented at the UAI: Uncertainty in Artificial Intelligence, AUAI Press.","chicago":"Kolmogorov, Vladimir, and Martin Wainwright. “On the Optimality of Tree Reweighted Max Product Message Passing,” 316–23. AUAI Press, 2005.","ista":"Kolmogorov V, Wainwright M. 2005. On the optimality of tree reweighted max product message passing. UAI: Uncertainty in Artificial Intelligence, 316–323.","mla":"Kolmogorov, Vladimir, and Martin Wainwright. <i>On the Optimality of Tree Reweighted Max Product Message Passing</i>. AUAI Press, 2005, pp. 316–23."},"extern":1,"day":"01","type":"conference","abstract":[{"text":"Tree-reweighted max-product (TRW) message passing [9] is a modified form of the ordinary max-product algorithm for attempting to find minimal energy configurations in Markov random field with cycles. For a TRW fixed point satisfying the strong tree agreement condition, the algorithm outputs a configuration that is provably optimal. In this paper, we focus on the case of binary variables with pairwise couplings, and establish stronger properties of TRW fixed points that satisfy only the milder condition of weak tree agreement (WTA). First, we demonstrate how it is possible to identify part of the optimal solution - i.e., a provably optimal solution for a subset of nodes - without knowing a complete solution. Second, we show that for submodular functions, a WTA fixed point always yields a globally optimal solution. We establish that for binary variables, any WTA fixed point always achieves the global maximum of the linear programming relaxation underlying the TRW method.","lang":"eng"}],"year":"2005"},{"year":"2005","citation":{"apa":"Kolmogorov, V., &#38; Boykov, Y. (2005). What metrics can be approximated by geo cuts or global optimization of length area and flux (Vol. 1, pp. 564–571). Presented at the ICCV: International Conference on Computer Vision, IEEE. <a href=\"https://doi.org/10.1109/ICCV.2005.252\">https://doi.org/10.1109/ICCV.2005.252</a>","ama":"Kolmogorov V, Boykov Y. What metrics can be approximated by geo cuts or global optimization of length area and flux. In: Vol 1. IEEE; 2005:564-571. doi:<a href=\"https://doi.org/10.1109/ICCV.2005.252\">10.1109/ICCV.2005.252</a>","ieee":"V. Kolmogorov and Y. Boykov, “What metrics can be approximated by geo cuts or global optimization of length area and flux,” presented at the ICCV: International Conference on Computer Vision, 2005, vol. 1, pp. 564–571.","chicago":"Kolmogorov, Vladimir, and Yuri Boykov. “What Metrics Can Be Approximated by Geo Cuts or Global Optimization of Length Area and Flux,” 1:564–71. IEEE, 2005. <a href=\"https://doi.org/10.1109/ICCV.2005.252\">https://doi.org/10.1109/ICCV.2005.252</a>.","ista":"Kolmogorov V, Boykov Y. 2005. What metrics can be approximated by geo cuts or global optimization of length area and flux. ICCV: International Conference on Computer Vision vol. 1, 564–571.","mla":"Kolmogorov, Vladimir, and Yuri Boykov. <i>What Metrics Can Be Approximated by Geo Cuts or Global Optimization of Length Area and Flux</i>. Vol. 1, IEEE, 2005, pp. 564–71, doi:<a href=\"https://doi.org/10.1109/ICCV.2005.252\">10.1109/ICCV.2005.252</a>.","short":"V. Kolmogorov, Y. Boykov, in:, IEEE, 2005, pp. 564–571."},"abstract":[{"text":"In the work of the authors (2003), we showed that graph cuts can find hypersurfaces of globally minimal length (or area) under any Riemannian metric. Here we show that graph cuts on directed regular grids can approximate a significantly more general class of continuous non-symmetric metrics. Using submodularity condition (Boros and Hammer, 2002 and Kolmogorov and Zabih, 2004), we obtain a tight characterization of graph-representable metrics. Such &quot;submodular&quot; metrics have an elegant geometric interpretation via hypersurface functionals combining length/area and flux. Practically speaking, we attend 'geo-cuts' algorithm to a wider class of geometrically motivated hypersurface functionals and show how to globally optimize any combination of length/area and flux of a given vector field. The concept of flux was recently introduced into computer vision by Vasilevskiy and Siddiqi (2002) but it was mainly studied within variational framework so far. We are first to show that flux can be integrated into graph cuts as well. Combining geometric concepts of flux and length/area within the global optimization framework of graph cuts allows principled discrete segmentation models and advances the slate of the art for the graph cuts methods in vision. In particular we address the &quot;shrinking&quot; problem of graph cuts, improve segmentation of long thin objects, and introduce useful shape constraints.","lang":"eng"}],"type":"conference","doi":"10.1109/ICCV.2005.252","extern":1,"day":"05","date_published":"2005-12-05T00:00:00Z","quality_controlled":0,"intvolume":"         1","publisher":"IEEE","volume":1,"conference":{"name":"ICCV: International Conference on Computer Vision"},"publication_status":"published","publist_id":"3501","date_created":"2018-12-11T12:01:52Z","status":"public","month":"12","author":[{"full_name":"Vladimir Kolmogorov","last_name":"Kolmogorov","id":"3D50B0BA-F248-11E8-B48F-1D18A9856A87","first_name":"Vladimir"},{"full_name":"Boykov, Yuri","last_name":"Boykov","first_name":"Yuri"}],"title":"What metrics can be approximated by geo cuts or global optimization of length area and flux","date_updated":"2021-01-12T07:41:38Z","_id":"3182","page":"564 - 571"},{"year":"2005","day":"25","type":"conference","extern":1,"abstract":[{"text":"This paper describes two algorithms capable of real-time segmentation of foreground from background layers in stereo video sequences. Automatic separation of layers from colour/contrast or from stereo alone is known to be error-prone. Here, colour, contrast and stereo matching information are fused to infer layers accurately and efficiently. The first algorithm, Layered Dynamic Programming (LDP), solves stereo in an extended 6-state space that represents both foreground/background layers and occluded regions. The stereo-match likelihood is then fused with a contrast-sensitive colour model that is learned on the fly, and stereo disparities are obtained by dynamic programming. The second algorithm, Layered Graph Cut (LGC), does not directly solve stereo. Instead the stereo match likelihood is marginalised over foreground and background hypotheses, and fused with a contrast-sensitive colour model like the one used in LDP. Segmentation is solved efficiently by ternary graph cut. Both algorithms are evaluated with respect to ground truth data and found to have similar perfomance, substantially better than stereo or colour/contrast alone. However, their characteristics with respect to computational efficiency are rather different. The algorithms are demonstrated in the application of background substitution and shown to give good quality composite video output.","lang":"eng"}],"doi":"10.1109/CVPR.2005.91","citation":{"short":"V. Kolmogorov, A. Criminisi, A. Blake, G. Cross, C. Rother, in:, IEEE, 2005, pp. 407–414.","ieee":"V. Kolmogorov, A. Criminisi, A. Blake, G. Cross, and C. Rother, “Bi-layer segmentation of binocular stereo video,” presented at the CVPR: Computer Vision and Pattern Recognition, 2005, vol. 2, pp. 407–414.","apa":"Kolmogorov, V., Criminisi, A., Blake, A., Cross, G., &#38; Rother, C. (2005). Bi-layer segmentation of binocular stereo video (Vol. 2, pp. 407–414). Presented at the CVPR: Computer Vision and Pattern Recognition, IEEE. <a href=\"https://doi.org/10.1109/CVPR.2005.91\">https://doi.org/10.1109/CVPR.2005.91</a>","ama":"Kolmogorov V, Criminisi A, Blake A, Cross G, Rother C. Bi-layer segmentation of binocular stereo video. In: Vol 2. IEEE; 2005:407-414. doi:<a href=\"https://doi.org/10.1109/CVPR.2005.91\">10.1109/CVPR.2005.91</a>","mla":"Kolmogorov, Vladimir, et al. <i>Bi-Layer Segmentation of Binocular Stereo Video</i>. Vol. 2, IEEE, 2005, pp. 407–14, doi:<a href=\"https://doi.org/10.1109/CVPR.2005.91\">10.1109/CVPR.2005.91</a>.","ista":"Kolmogorov V, Criminisi A, Blake A, Cross G, Rother C. 2005. Bi-layer segmentation of binocular stereo video. CVPR: Computer Vision and Pattern Recognition vol. 2, 407–414.","chicago":"Kolmogorov, Vladimir, Antonio Criminisi, Andrew Blake, Geoffrey Cross, and Carsten Rother. “Bi-Layer Segmentation of Binocular Stereo Video,” 2:407–14. IEEE, 2005. <a href=\"https://doi.org/10.1109/CVPR.2005.91\">https://doi.org/10.1109/CVPR.2005.91</a>."},"intvolume":"         2","quality_controlled":0,"date_published":"2005-07-25T00:00:00Z","publisher":"IEEE","main_file_link":[{"url":"http://research.microsoft.com/pubs/67281/criminisi_cvpr2005.pdf","open_access":"0"}],"volume":2,"conference":{"name":"CVPR: Computer Vision and Pattern Recognition"},"publication_status":"published","date_created":"2018-12-11T12:01:52Z","publist_id":"3502","month":"07","status":"public","title":"Bi-layer segmentation of binocular stereo video","author":[{"last_name":"Kolmogorov","full_name":"Vladimir Kolmogorov","id":"3D50B0BA-F248-11E8-B48F-1D18A9856A87","first_name":"Vladimir"},{"first_name":"Antonio","last_name":"Criminisi","full_name":"Criminisi, Antonio"},{"last_name":"Blake","full_name":"Blake, Andrew","first_name":"Andrew"},{"full_name":"Cross, Geoffrey","last_name":"Cross","first_name":"Geoffrey"},{"first_name":"Carsten","last_name":"Rother","full_name":"Rother, Carsten"}],"_id":"3183","page":"407 - 414","date_updated":"2021-01-12T07:41:38Z"},{"volume":3621,"publisher":"Springer","date_published":"2005-09-12T00:00:00Z","quality_controlled":0,"intvolume":"      3621","citation":{"short":"M. Bellare, K.Z. Pietrzak, P. Rogaway, in:, Springer, 2005, pp. 527–545.","ama":"Bellare M, Pietrzak KZ, Rogaway P. Improved security analyses for CBC MACs. In: Vol 3621. Springer; 2005:527-545. doi:<a href=\"https://doi.org/10.1007/11535218_32\">10.1007/11535218_32</a>","ieee":"M. Bellare, K. Z. Pietrzak, and P. Rogaway, “Improved security analyses for CBC MACs,” presented at the CRYPTO: International Cryptology Conference, 2005, vol. 3621, pp. 527–545.","apa":"Bellare, M., Pietrzak, K. Z., &#38; Rogaway, P. (2005). Improved security analyses for CBC MACs (Vol. 3621, pp. 527–545). Presented at the CRYPTO: International Cryptology Conference, Springer. <a href=\"https://doi.org/10.1007/11535218_32\">https://doi.org/10.1007/11535218_32</a>","mla":"Bellare, Mihir, et al. <i>Improved Security Analyses for CBC MACs</i>. Vol. 3621, Springer, 2005, pp. 527–45, doi:<a href=\"https://doi.org/10.1007/11535218_32\">10.1007/11535218_32</a>.","ista":"Bellare M, Pietrzak KZ, Rogaway P. 2005. Improved security analyses for CBC MACs. CRYPTO: International Cryptology Conference, LNCS, vol. 3621, 527–545.","chicago":"Bellare, Mihir, Krzysztof Z Pietrzak, and Phillip Rogaway. “Improved Security Analyses for CBC MACs,” 3621:527–45. Springer, 2005. <a href=\"https://doi.org/10.1007/11535218_32\">https://doi.org/10.1007/11535218_32</a>."},"day":"12","doi":"10.1007/11535218_32","abstract":[{"lang":"eng","text":"We present an improved bound on the advantage of any q-query adversary at distinguishing between the CBC MAC over a random n-bit permutation and a random function outputting n bits. The result assumes that no message queried is a prefix of any other, as is the case when all messages to be MACed have the same length. We go on to give an improved analysis of the encrypted CBC MAC, where there is no restriction on queried messages. Letting m be the block length of the longest query, our bounds are about mq2/2n for the basic CBC MAC and mo(1)q2/2n for the encrypted CBC MAC, improving prior bounds of m2q2/2n. The new bounds translate into improved guarantees on the probability of forging these MACs."}],"extern":1,"type":"conference","year":"2005","acknowledgement":"Pietrzak was supported by the Swiss National Science Foundation, project No. 200020-103847/1.","date_updated":"2021-01-12T07:41:50Z","_id":"3211","page":"527 - 545","title":"Improved security analyses for CBC MACs","author":[{"full_name":"Bellare, Mihir","last_name":"Bellare","first_name":"Mihir"},{"first_name":"Krzysztof Z","id":"3E04A7AA-F248-11E8-B48F-1D18A9856A87","full_name":"Krzysztof Pietrzak","last_name":"Pietrzak","orcid":"0000-0002-9139-1654"},{"first_name":"Phillip","last_name":"Rogaway","full_name":"Rogaway, Phillip"}],"status":"public","month":"09","publist_id":"3469","date_created":"2018-12-11T12:02:02Z","publication_status":"published","alternative_title":["LNCS"],"conference":{"name":"CRYPTO: International Cryptology Conference"}}]