[{"author":[{"last_name":"Csata","first_name":"Eniko","full_name":"Csata, Eniko"},{"first_name":"Alfonso","full_name":"Perez-Escudero, Alfonso","last_name":"Perez-Escudero"},{"first_name":"Emmanuel","full_name":"Laury, Emmanuel","last_name":"Laury"},{"first_name":"Hanna","id":"8fc5c6f6-5903-11ec-abad-c83f046253e7","full_name":"Leitner, Hanna","last_name":"Leitner"},{"last_name":"Latil","first_name":"Gerard","full_name":"Latil, Gerard"},{"last_name":"Heinze","first_name":"Juerge","full_name":"Heinze, Juerge"},{"last_name":"Simpson","full_name":"Simpson, Stephen","first_name":"Stephen"},{"last_name":"Cremer","id":"2F64EC8C-F248-11E8-B48F-1D18A9856A87","full_name":"Cremer, Sylvia","orcid":"0000-0002-2193-3868","first_name":"Sylvia"},{"full_name":"Dussutour, Audrey","first_name":"Audrey","last_name":"Dussutour"}],"intvolume":"        34","issue":"4","citation":{"short":"E. Csata, A. Perez-Escudero, E. Laury, H. Leitner, G. Latil, J. Heinze, S. Simpson, S. Cremer, A. Dussutour, Current Biology 34 (2024) 902–909.e6.","chicago":"Csata, Eniko, Alfonso Perez-Escudero, Emmanuel Laury, Hanna Leitner, Gerard Latil, Juerge Heinze, Stephen Simpson, Sylvia Cremer, and Audrey Dussutour. “Fungal Infection Alters Collective Nutritional Intake of Ant Colonies.” <i>Current Biology</i>. Elsevier, 2024. <a href=\"https://doi.org/10.1016/j.cub.2024.01.017\">https://doi.org/10.1016/j.cub.2024.01.017</a>.","apa":"Csata, E., Perez-Escudero, A., Laury, E., Leitner, H., Latil, G., Heinze, J., … Dussutour, A. (2024). Fungal infection alters collective nutritional intake of ant colonies. <i>Current Biology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.cub.2024.01.017\">https://doi.org/10.1016/j.cub.2024.01.017</a>","ieee":"E. Csata <i>et al.</i>, “Fungal infection alters collective nutritional intake of ant colonies,” <i>Current Biology</i>, vol. 34, no. 4. Elsevier, p. 902–909.e6, 2024.","ama":"Csata E, Perez-Escudero A, Laury E, et al. Fungal infection alters collective nutritional intake of ant colonies. <i>Current Biology</i>. 2024;34(4):902-909.e6. doi:<a href=\"https://doi.org/10.1016/j.cub.2024.01.017\">10.1016/j.cub.2024.01.017</a>","ista":"Csata E, Perez-Escudero A, Laury E, Leitner H, Latil G, Heinze J, Simpson S, Cremer S, Dussutour A. 2024. Fungal infection alters collective nutritional intake of ant colonies. Current Biology. 34(4), 902–909.e6.","mla":"Csata, Eniko, et al. “Fungal Infection Alters Collective Nutritional Intake of Ant Colonies.” <i>Current Biology</i>, vol. 34, no. 4, Elsevier, 2024, p. 902–909.e6, doi:<a href=\"https://doi.org/10.1016/j.cub.2024.01.017\">10.1016/j.cub.2024.01.017</a>."},"date_published":"2024-02-26T00:00:00Z","year":"2024","status":"public","publication_status":"published","external_id":{"isi":["001195884300001"],"pmid":["38307022"]},"language":[{"iso":"eng"}],"quality_controlled":"1","pmid":1,"date_updated":"2025-08-05T13:29:38Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","main_file_link":[{"url":"https://doi.org/10.1101/2023.10.26.564092","open_access":"1"}],"title":"Fungal infection alters collective nutritional intake of ant colonies","publication":"Current Biology","date_created":"2023-10-31T13:30:20Z","acknowledgement":"We are sincerely grateful to the referees for their valuable comments and suggestions, which helped us to improve the paper. We are thankful to Jorgen Eilenberg and Nicolai V. Meyling for the fungal strain, to Simon Tragust, Abel Bernadou, and Brian Lazarro for insightful discussions, to Iago Sanmartín-Villar, Léa Briard, Céline Maitrel, and Nolwenn Rissen for their help with the experiments. Furthermore, we thank Anna V. Grasse for help with the immune gene expression analyses. We thank Sergio Ibarra for creating the graphical abstract. E.C. was supported by a Fyssen Foundation grant and the Alexander von Humboldt Foundation. A.D. was supported by the CNRS.","publisher":"Elsevier","abstract":[{"lang":"eng","text":"In animals, parasitic infections impose significant fitness costs.1,2,3,4,5,6 Infected animals can alter their feeding behavior to resist infection,7,8,9,10,11,12 but parasites can manipulate animal foraging behavior to their own benefits.13,14,15,16 How nutrition influences host-parasite interactions is not well understood, as studies have mainly focused on the host and less on the parasite.9,12,17,18,19,20,21,22,23 We used the nutritional geometry framework24 to investigate the role of amino acids (AA) and carbohydrates (C) in a host-parasite system: the Argentine ant, Linepithema humile, and the entomopathogenic fungus, Metarhizium brunneum. First, using 18 diets varying in AA:C composition, we established that the fungus performed best on the high-amino-acid diet 1:4. Second, we found that the fungus reached this optimal diet when given various diet pairings, revealing its ability to cope with nutritional challenges. Third, we showed that the optimal fungal diet reduced the lifespan of healthy ants when compared with a high-carbohydrate diet but had no effect on infected ants. Fourth, we revealed that infected ant colonies, given a choice between the optimal fungal diet and a high-carbohydrate diet, chose the optimal fungal diet, whereas healthy colonies avoided it. Lastly, by disentangling fungal infection from host immune response, we demonstrated that infected ants foraged on the optimal fungal diet in response to immune activation and not as a result of parasite manipulation. Therefore, we revealed that infected ant colonies chose a diet that is costly for survival in the long term but beneficial in the short term—a form of collective self-medication."}],"oa":1,"article_type":"original","_id":"14479","volume":34,"doi":"10.1016/j.cub.2024.01.017","day":"26","publication_identifier":{"issn":["0960-9822"],"eissn":["1879-0445"]},"type":"journal_article","month":"02","oa_version":"Preprint","article_processing_charge":"No","department":[{"_id":"SyCr"}],"page":"902-909.e6","scopus_import":"1","isi":1},{"article_processing_charge":"Yes (via OA deal)","scopus_import":"1","isi":1,"ddc":["000"],"department":[{"_id":"BeBi"}],"page":"1148-1166","oa_version":"Published Version","type":"journal_article","month":"04","_id":"14488","volume":132,"publication_identifier":{"issn":["0920-5691"],"eissn":["1573-1405"]},"tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"doi":"10.1007/s11263-023-01899-3","day":"01","article_type":"original","publisher":"Springer Nature","oa":1,"file":[{"creator":"dernst","file_name":"2024_IJCV_Rao.pdf","file_size":9942520,"content_type":"application/pdf","relation":"main_file","checksum":"5eef1d920f6fe700d7856098000d05f1","access_level":"open_access","date_updated":"2024-07-22T11:07:14Z","date_created":"2024-07-22T11:07:14Z","file_id":"17304","success":1}],"abstract":[{"text":"Portrait viewpoint and illumination editing is an important problem with several applications in VR/AR, movies, and photography. Comprehensive knowledge of geometry and illumination is critical for obtaining photorealistic results. Current methods are unable to explicitly model in 3D while handling both viewpoint and illumination editing from a single image. In this paper, we propose VoRF, a novel approach that can take even a single portrait image as input and relight human heads under novel illuminations that can be viewed from arbitrary viewpoints. VoRF represents a human head as a continuous volumetric field and learns a prior model of human heads using a coordinate-based MLP with individual latent spaces for identity and illumination. The prior model is learned in an auto-decoder manner over a diverse class of head shapes and appearances, allowing VoRF to generalize to novel test identities from a single input image. Additionally, VoRF has a reflectance MLP that uses the intermediate features of the prior model for rendering One-Light-at-A-Time (OLAT) images under novel views. We synthesize novel illuminations by combining these OLAT images with target environment maps. Qualitative and quantitative evaluations demonstrate the effectiveness of VoRF for relighting and novel view synthesis, even when applied to unseen subjects under uncontrolled illumination. This work is an extension of Rao et al. (VoRF: Volumetric Relightable Faces 2022). We provide extensive evaluation and ablative studies of our model and also provide an application, where any face can be relighted using textual input.","lang":"eng"}],"date_updated":"2025-08-05T13:28:58Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","pmid":1,"date_created":"2023-11-05T23:00:54Z","acknowledgement":"Open Access funding enabled and organized by Projekt DEAL.","title":"A deeper analysis of volumetric relightiable faces","publication":"International Journal of Computer Vision","year":"2024","date_published":"2024-04-01T00:00:00Z","publication_status":"published","status":"public","citation":{"apa":"Rao, P., Mallikarjun, B. R., Fox, G., Weyrich, T., Bickel, B., Pfister, H., … Elgharib, M. (2024). A deeper analysis of volumetric relightiable faces. <i>International Journal of Computer Vision</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s11263-023-01899-3\">https://doi.org/10.1007/s11263-023-01899-3</a>","ieee":"P. Rao <i>et al.</i>, “A deeper analysis of volumetric relightiable faces,” <i>International Journal of Computer Vision</i>, vol. 132. Springer Nature, pp. 1148–1166, 2024.","ama":"Rao P, Mallikarjun BR, Fox G, et al. A deeper analysis of volumetric relightiable faces. <i>International Journal of Computer Vision</i>. 2024;132:1148-1166. doi:<a href=\"https://doi.org/10.1007/s11263-023-01899-3\">10.1007/s11263-023-01899-3</a>","ista":"Rao P, Mallikarjun BR, Fox G, Weyrich T, Bickel B, Pfister H, Matusik W, Zhan F, Tewari A, Theobalt C, Elgharib M. 2024. A deeper analysis of volumetric relightiable faces. International Journal of Computer Vision. 132, 1148–1166.","mla":"Rao, Pramod, et al. “A Deeper Analysis of Volumetric Relightiable Faces.” <i>International Journal of Computer Vision</i>, vol. 132, Springer Nature, 2024, pp. 1148–66, doi:<a href=\"https://doi.org/10.1007/s11263-023-01899-3\">10.1007/s11263-023-01899-3</a>.","short":"P. Rao, B.R. Mallikarjun, G. Fox, T. Weyrich, B. Bickel, H. Pfister, W. Matusik, F. Zhan, A. Tewari, C. Theobalt, M. Elgharib, International Journal of Computer Vision 132 (2024) 1148–1166.","chicago":"Rao, Pramod, B. R. Mallikarjun, Gereon Fox, Tim Weyrich, Bernd Bickel, Hanspeter Pfister, Wojciech Matusik, et al. “A Deeper Analysis of Volumetric Relightiable Faces.” <i>International Journal of Computer Vision</i>. Springer Nature, 2024. <a href=\"https://doi.org/10.1007/s11263-023-01899-3\">https://doi.org/10.1007/s11263-023-01899-3</a>."},"file_date_updated":"2024-07-22T11:07:14Z","quality_controlled":"1","language":[{"iso":"eng"}],"external_id":{"isi":["001091935600002"],"pmid":["38549787"]},"intvolume":"       132","author":[{"last_name":"Rao","full_name":"Rao, Pramod","first_name":"Pramod"},{"full_name":"Mallikarjun, B. R.","first_name":"B. R.","last_name":"Mallikarjun"},{"last_name":"Fox","first_name":"Gereon","full_name":"Fox, Gereon"},{"last_name":"Weyrich","first_name":"Tim","full_name":"Weyrich, Tim"},{"first_name":"Bernd","id":"49876194-F248-11E8-B48F-1D18A9856A87","full_name":"Bickel, Bernd","orcid":"0000-0001-6511-9385","last_name":"Bickel"},{"last_name":"Pfister","full_name":"Pfister, Hanspeter","first_name":"Hanspeter"},{"last_name":"Matusik","full_name":"Matusik, Wojciech","first_name":"Wojciech"},{"last_name":"Zhan","first_name":"Fangneng","full_name":"Zhan, Fangneng"},{"first_name":"Ayush","full_name":"Tewari, Ayush","last_name":"Tewari"},{"full_name":"Theobalt, Christian","first_name":"Christian","last_name":"Theobalt"},{"first_name":"Mohamed","full_name":"Elgharib, Mohamed","last_name":"Elgharib"}],"has_accepted_license":"1"},{"quality_controlled":"1","language":[{"iso":"eng"}],"external_id":{"pmid":["37951597"]},"extern":"1","status":"public","publication_status":"published","year":"2024","date_published":"2024-04-01T00:00:00Z","file_date_updated":"2024-07-16T08:22:13Z","citation":{"ama":"Kaiyrzhanov R, Rad A, Lin S-J, et al. Bi-allelic ACBD6 variants lead to a neurodevelopmental syndrome with progressive and complex movement disorders. <i>Brain</i>. 2024;147(4):1436-1456. doi:<a href=\"https://doi.org/10.1093/brain/awad380\">10.1093/brain/awad380</a>","ieee":"R. Kaiyrzhanov <i>et al.</i>, “Bi-allelic ACBD6 variants lead to a neurodevelopmental syndrome with progressive and complex movement disorders,” <i>Brain</i>, vol. 147, no. 4. Oxford University Press, pp. 1436–1456, 2024.","apa":"Kaiyrzhanov, R., Rad, A., Lin, S.-J., Bertoli-Avella, A., Kallemeijn, W. W., Godwin, A., … Maroofian, R. (2024). Bi-allelic ACBD6 variants lead to a neurodevelopmental syndrome with progressive and complex movement disorders. <i>Brain</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/brain/awad380\">https://doi.org/10.1093/brain/awad380</a>","ista":"Kaiyrzhanov R, Rad A, Lin S-J, Bertoli-Avella A, Kallemeijn WW, Godwin A, Zaki MS, Huang K, Lau T, Petree C, Efthymiou S, Ghayoor Karimiani E, Hempel M, Normand EA, Rudnik-Schöneborn S, Schatz UA, Baggelaar MP, Ilyas M, Sultan T, Alvi JR, Ganieva M, Fowler B, Aanicai R, Akay Tayfun G, Al Saman A, Alswaid A, Amiri N, Asilova N, Shotelersuk V, Yeetong P, Azam M, Babaei M, Bahrami Monajemi G, Mohammadi P, Samie S, Banu SH, Basto JP, Kortüm F, Bauer M, Bauer P, Beetz C, Garshasbi M, Hameed Issa A, Eyaid W, Ahmed H, Hashemi N, Hassanpour K, Herman I, Ibrohimov S, Abdul-Majeed BA, Imdad M, Isrofilov M, Kaiyal Q, Khan S, Kirmse B, Koster J, Lourenço CM, Mitani T, Moldovan O, Murphy D, Najafi M, Pehlivan D, Rocha ME, Salpietro V, Schmidts M, Shalata A, Mahroum M, Talbeya JK, Taylor RW, Vazquez D, Vetro A, Waterham HR, Zaman M, Schrader TA, Chung WK, Guerrini R, Lupski JR, Gleeson J, Suri M, Jamshidi Y, Bhatia KP, Vona B, Schrader M, Severino M, Guille M, Tate EW, Varshney GK, Houlden H, Maroofian R. 2024. Bi-allelic ACBD6 variants lead to a neurodevelopmental syndrome with progressive and complex movement disorders. Brain. 147(4), 1436–1456.","mla":"Kaiyrzhanov, Rauan, et al. “Bi-Allelic ACBD6 Variants Lead to a Neurodevelopmental Syndrome with Progressive and Complex Movement Disorders.” <i>Brain</i>, vol. 147, no. 4, Oxford University Press, 2024, pp. 1436–56, doi:<a href=\"https://doi.org/10.1093/brain/awad380\">10.1093/brain/awad380</a>.","short":"R. Kaiyrzhanov, A. Rad, S.-J. Lin, A. Bertoli-Avella, W.W. Kallemeijn, A. Godwin, M.S. Zaki, K. Huang, T. Lau, C. Petree, S. Efthymiou, E. Ghayoor Karimiani, M. Hempel, E.A. Normand, S. Rudnik-Schöneborn, U.A. Schatz, M.P. Baggelaar, M. Ilyas, T. Sultan, J.R. Alvi, M. Ganieva, B. Fowler, R. Aanicai, G. Akay Tayfun, A. Al Saman, A. Alswaid, N. Amiri, N. Asilova, V. Shotelersuk, P. Yeetong, M. Azam, M. Babaei, G. Bahrami Monajemi, P. Mohammadi, S. Samie, S.H. Banu, J.P. Basto, F. Kortüm, M. Bauer, P. Bauer, C. Beetz, M. Garshasbi, A. Hameed Issa, W. Eyaid, H. Ahmed, N. Hashemi, K. Hassanpour, I. Herman, S. Ibrohimov, B.A. Abdul-Majeed, M. Imdad, M. Isrofilov, Q. Kaiyal, S. Khan, B. Kirmse, J. Koster, C.M. Lourenço, T. Mitani, O. Moldovan, D. Murphy, M. Najafi, D. Pehlivan, M.E. Rocha, V. Salpietro, M. Schmidts, A. Shalata, M. Mahroum, J.K. Talbeya, R.W. Taylor, D. Vazquez, A. Vetro, H.R. Waterham, M. Zaman, T.A. Schrader, W.K. Chung, R. Guerrini, J.R. Lupski, J. Gleeson, M. Suri, Y. Jamshidi, K.P. Bhatia, B. Vona, M. Schrader, M. Severino, M. Guille, E.W. Tate, G.K. Varshney, H. Houlden, R. Maroofian, Brain 147 (2024) 1436–1456.","chicago":"Kaiyrzhanov, Rauan, Aboulfazl Rad, Sheng-Jia Lin, Aida Bertoli-Avella, Wouter W Kallemeijn, Annie Godwin, Maha S Zaki, et al. “Bi-Allelic ACBD6 Variants Lead to a Neurodevelopmental Syndrome with Progressive and Complex Movement Disorders.” <i>Brain</i>. Oxford University Press, 2024. <a href=\"https://doi.org/10.1093/brain/awad380\">https://doi.org/10.1093/brain/awad380</a>."},"has_accepted_license":"1","issue":"4","intvolume":"       147","author":[{"first_name":"Rauan","full_name":"Kaiyrzhanov, Rauan","last_name":"Kaiyrzhanov"},{"first_name":"Aboulfazl","full_name":"Rad, Aboulfazl","last_name":"Rad"},{"first_name":"Sheng-Jia","full_name":"Lin, Sheng-Jia","last_name":"Lin"},{"full_name":"Bertoli-Avella, Aida","first_name":"Aida","last_name":"Bertoli-Avella"},{"last_name":"Kallemeijn","full_name":"Kallemeijn, Wouter W","first_name":"Wouter W"},{"last_name":"Godwin","full_name":"Godwin, Annie","first_name":"Annie"},{"full_name":"Zaki, Maha S","first_name":"Maha S","last_name":"Zaki"},{"last_name":"Huang","first_name":"Kevin","orcid":"0000-0002-2512-7812","id":"3b3d2888-1ff6-11ee-9fa6-8f209ca91fe3","full_name":"Huang, Kevin"},{"last_name":"Lau","full_name":"Lau, Tracy","first_name":"Tracy"},{"first_name":"Cassidy","full_name":"Petree, Cassidy","last_name":"Petree"},{"last_name":"Efthymiou","full_name":"Efthymiou, Stephanie","first_name":"Stephanie"},{"last_name":"Ghayoor Karimiani","full_name":"Ghayoor Karimiani, Ehsan","first_name":"Ehsan"},{"last_name":"Hempel","first_name":"Maja","full_name":"Hempel, Maja"},{"last_name":"Normand","first_name":"Elizabeth A","full_name":"Normand, Elizabeth A"},{"last_name":"Rudnik-Schöneborn","first_name":"Sabine","full_name":"Rudnik-Schöneborn, Sabine"},{"first_name":"Ulrich A","full_name":"Schatz, Ulrich A","last_name":"Schatz"},{"first_name":"Marc P","full_name":"Baggelaar, Marc P","last_name":"Baggelaar"},{"first_name":"Muhammad","full_name":"Ilyas, Muhammad","last_name":"Ilyas"},{"full_name":"Sultan, Tipu","first_name":"Tipu","last_name":"Sultan"},{"last_name":"Alvi","full_name":"Alvi, Javeria Raza","first_name":"Javeria Raza"},{"last_name":"Ganieva","first_name":"Manizha","full_name":"Ganieva, Manizha"},{"last_name":"Fowler","full_name":"Fowler, Ben","first_name":"Ben"},{"last_name":"Aanicai","first_name":"Ruxandra","full_name":"Aanicai, Ruxandra"},{"full_name":"Akay Tayfun, Gulsen","first_name":"Gulsen","last_name":"Akay Tayfun"},{"full_name":"Al Saman, Abdulaziz","first_name":"Abdulaziz","last_name":"Al Saman"},{"first_name":"Abdulrahman","full_name":"Alswaid, Abdulrahman","last_name":"Alswaid"},{"full_name":"Amiri, Nafise","first_name":"Nafise","last_name":"Amiri"},{"full_name":"Asilova, Nilufar","first_name":"Nilufar","last_name":"Asilova"},{"last_name":"Shotelersuk","first_name":"Vorasuk","full_name":"Shotelersuk, Vorasuk"},{"first_name":"Patra","full_name":"Yeetong, Patra","last_name":"Yeetong"},{"last_name":"Azam","full_name":"Azam, Matloob","first_name":"Matloob"},{"last_name":"Babaei","full_name":"Babaei, Meisam","first_name":"Meisam"},{"full_name":"Bahrami Monajemi, Gholamreza","first_name":"Gholamreza","last_name":"Bahrami Monajemi"},{"last_name":"Mohammadi","full_name":"Mohammadi, Pouria","first_name":"Pouria"},{"last_name":"Samie","first_name":"Saeed","full_name":"Samie, Saeed"},{"last_name":"Banu","first_name":"Selina Husna","full_name":"Banu, Selina Husna"},{"last_name":"Basto","full_name":"Basto, Jorge Pinto","first_name":"Jorge Pinto"},{"last_name":"Kortüm","first_name":"Fanny","full_name":"Kortüm, Fanny"},{"first_name":"Mislen","full_name":"Bauer, Mislen","last_name":"Bauer"},{"full_name":"Bauer, Peter","first_name":"Peter","last_name":"Bauer"},{"first_name":"Christian","full_name":"Beetz, Christian","last_name":"Beetz"},{"last_name":"Garshasbi","first_name":"Masoud","full_name":"Garshasbi, Masoud"},{"last_name":"Hameed Issa","first_name":"Awatif","full_name":"Hameed Issa, Awatif"},{"last_name":"Eyaid","full_name":"Eyaid, Wafaa","first_name":"Wafaa"},{"last_name":"Ahmed","full_name":"Ahmed, Hind","first_name":"Hind"},{"full_name":"Hashemi, Narges","first_name":"Narges","last_name":"Hashemi"},{"first_name":"Kazem","full_name":"Hassanpour, Kazem","last_name":"Hassanpour"},{"last_name":"Herman","first_name":"Isabella","full_name":"Herman, Isabella"},{"full_name":"Ibrohimov, Sherozjon","first_name":"Sherozjon","last_name":"Ibrohimov"},{"full_name":"Abdul-Majeed, Ban A","first_name":"Ban A","last_name":"Abdul-Majeed"},{"first_name":"Maria","full_name":"Imdad, Maria","last_name":"Imdad"},{"full_name":"Isrofilov, Maksudjon","first_name":"Maksudjon","last_name":"Isrofilov"},{"last_name":"Kaiyal","first_name":"Qassem","full_name":"Kaiyal, Qassem"},{"full_name":"Khan, Suliman","first_name":"Suliman","last_name":"Khan"},{"full_name":"Kirmse, Brian","first_name":"Brian","last_name":"Kirmse"},{"last_name":"Koster","first_name":"Janet","full_name":"Koster, Janet"},{"last_name":"Lourenço","full_name":"Lourenço, Charles Marques","first_name":"Charles Marques"},{"last_name":"Mitani","first_name":"Tadahiro","full_name":"Mitani, Tadahiro"},{"first_name":"Oana","full_name":"Moldovan, Oana","last_name":"Moldovan"},{"full_name":"Murphy, David","first_name":"David","last_name":"Murphy"},{"full_name":"Najafi, Maryam","first_name":"Maryam","last_name":"Najafi"},{"last_name":"Pehlivan","full_name":"Pehlivan, Davut","first_name":"Davut"},{"last_name":"Rocha","first_name":"Maria Eugenia","full_name":"Rocha, Maria Eugenia"},{"first_name":"Vincenzo","full_name":"Salpietro, Vincenzo","last_name":"Salpietro"},{"full_name":"Schmidts, Miriam","first_name":"Miriam","last_name":"Schmidts"},{"last_name":"Shalata","first_name":"Adel","full_name":"Shalata, Adel"},{"last_name":"Mahroum","full_name":"Mahroum, Mohammad","first_name":"Mohammad"},{"last_name":"Talbeya","first_name":"Jawabreh Kassem","full_name":"Talbeya, Jawabreh Kassem"},{"first_name":"Robert W","full_name":"Taylor, Robert W","last_name":"Taylor"},{"full_name":"Vazquez, Dayana","first_name":"Dayana","last_name":"Vazquez"},{"last_name":"Vetro","first_name":"Annalisa","full_name":"Vetro, Annalisa"},{"last_name":"Waterham","first_name":"Hans R","full_name":"Waterham, Hans R"},{"full_name":"Zaman, Mashaya","first_name":"Mashaya","last_name":"Zaman"},{"last_name":"Schrader","full_name":"Schrader, Tina A","first_name":"Tina A"},{"last_name":"Chung","full_name":"Chung, Wendy K","first_name":"Wendy K"},{"last_name":"Guerrini","first_name":"Renzo","full_name":"Guerrini, Renzo"},{"first_name":"James R","full_name":"Lupski, James R","last_name":"Lupski"},{"last_name":"Gleeson","full_name":"Gleeson, Joseph","first_name":"Joseph"},{"first_name":"Mohnish","full_name":"Suri, Mohnish","last_name":"Suri"},{"last_name":"Jamshidi","first_name":"Yalda","full_name":"Jamshidi, Yalda"},{"last_name":"Bhatia","first_name":"Kailash P","full_name":"Bhatia, Kailash P"},{"first_name":"Barbara","full_name":"Vona, Barbara","last_name":"Vona"},{"first_name":"Michael","full_name":"Schrader, Michael","last_name":"Schrader"},{"last_name":"Severino","full_name":"Severino, Mariasavina","first_name":"Mariasavina"},{"last_name":"Guille","full_name":"Guille, Matthew","first_name":"Matthew"},{"last_name":"Tate","full_name":"Tate, Edward W","first_name":"Edward W"},{"last_name":"Varshney","full_name":"Varshney, Gaurav K","first_name":"Gaurav K"},{"last_name":"Houlden","full_name":"Houlden, Henry","first_name":"Henry"},{"last_name":"Maroofian","first_name":"Reza","full_name":"Maroofian, Reza"}],"oa":1,"abstract":[{"text":"The acyl-CoA-binding domain-containing protein 6 (ACBD6) is ubiquitously expressed, plays a role in the acylation of lipids and proteins, and regulates the N-myristoylation of proteins via N-myristoyltransferase enzymes (NMTs). However, its precise function in cells is still unclear, as is the consequence of ACBD6 defects on human pathophysiology. Utilizing exome sequencing and extensive international data sharing efforts, we identified 45 affected individuals from 28 unrelated families (consanguinity 93%) with bi-allelic pathogenic, predominantly loss-of-function (18/20) variants in ACBD6. We generated zebrafish and Xenopus tropicalis acbd6 knockouts by CRISPR/Cas9 and characterized the role of ACBD6 on protein N-myristoylation with YnMyr chemical proteomics in the model organisms and human cells, with the latter also being subjected further to ACBD6 peroxisomal localization studies. The affected individuals (23 males and 22 females), with ages ranging from 1 to 50 years old, typically present with a complex and progressive disease involving moderate-to-severe global developmental delay/intellectual disability (100%) with significant expressive language impairment (98%), movement disorders (97%), facial dysmorphism (95%), and mild cerebellar ataxia (85%) associated with gait impairment (94%), limb spasticity/hypertonia (76%), oculomotor (71%) and behavioural abnormalities (65%), overweight (59%), microcephaly (39%) and epilepsy (33%). The most conspicuous and common movement disorder was dystonia (94%), frequently leading to early-onset progressive postural deformities (97%), limb dystonia (55%), and cervical dystonia (31%). A jerky tremor in the upper limbs (63%), a mild head tremor (59%), parkinsonism/hypokinesia developing with advancing age (32%), and simple motor and vocal tics were among other frequent movement disorders. Midline brain malformations including corpus callosum abnormalities (70%), hypoplasia/agenesis of the anterior commissure (66%), short midbrain and small inferior cerebellar vermis (38% each), as well as hypertrophy of the clava (24%) were common neuroimaging findings. acbd6-deficient zebrafish and Xenopus models effectively recapitulated many clinical phenotypes reported in patients including movement disorders, progressive neuromotor impairment, seizures, microcephaly, craniofacial dysmorphism, and midbrain defects accompanied by developmental delay with increased mortality over time. Unlike ACBD5, ACBD6 did not show a peroxisomal localisation and ACBD6-deficiency was not associated with altered peroxisomal parameters in patient fibroblasts. Significant differences in YnMyr-labelling were observed for 68 co- and 18 post-translationally N-myristoylated proteins in patient-derived fibroblasts. N-Myristoylation was similarly affected in acbd6-deficient zebrafish and Xenopus tropicalis models, including Fus, Marcks, and Chchd-related proteins implicated in neurological diseases. The present study provides evidence that bi-allelic pathogenic variants in ACBD6 lead to a distinct neurodevelopmental syndrome accompanied by complex and progressive cognitive and movement disorders.","lang":"eng"}],"file":[{"checksum":"0ee7a8ab9300225d60968f7a3e3cfa0d","relation":"main_file","content_type":"application/pdf","file_name":"2024_Brain_Kaiyrzhanov.pdf","file_size":2641456,"creator":"dernst","file_id":"17254","date_created":"2024-07-16T08:22:13Z","success":1,"access_level":"open_access","date_updated":"2024-07-16T08:22:13Z"}],"publisher":"Oxford University Press","date_created":"2023-11-16T12:36:51Z","publication":"Brain","keyword":["Neurology (clinical)"],"title":"Bi-allelic ACBD6 variants lead to a neurodevelopmental syndrome with progressive and complex movement disorders","pmid":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2024-07-16T08:23:24Z","publication_identifier":{"eissn":["1460-2156"],"issn":["0006-8950"]},"day":"01","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"doi":"10.1093/brain/awad380","volume":147,"_id":"14543","article_type":"original","ddc":["570"],"scopus_import":"1","page":"1436-1456","department":[{"_id":"GradSch"}],"article_processing_charge":"No","oa_version":"Submitted Version","month":"04","type":"journal_article"},{"_id":"14652","volume":674,"doi":"10.1016/j.physb.2023.415539","day":"01","publication_identifier":{"issn":["0921-4526"]},"article_number":"415539","article_type":"original","article_processing_charge":"No","department":[{"_id":"MaIb"}],"scopus_import":"1","isi":1,"type":"journal_article","month":"02","oa_version":"None","citation":{"short":"S.L. Gupta, S. Singh, S. Kumar, U. Anupam, S.S. Thakur, A. Kumar, S. Panwar, D. Diwaker, Physica B: Condensed Matter 674 (2024).","chicago":"Gupta, Shyam Lal, Saurabh Singh, Sumit Kumar, Unknown Anupam, Samjeet Singh Thakur, Ashish Kumar, Sanjay Panwar, and D. Diwaker. “Ab-Initio Stability of Iridium Based Newly Proposed Full and Quaternary Heusler Alloys.” <i>Physica B: Condensed Matter</i>. Elsevier, 2024. <a href=\"https://doi.org/10.1016/j.physb.2023.415539\">https://doi.org/10.1016/j.physb.2023.415539</a>.","ama":"Gupta SL, Singh S, Kumar S, et al. Ab-initio stability of Iridium based newly proposed full and quaternary heusler alloys. <i>Physica B: Condensed Matter</i>. 2024;674(2). doi:<a href=\"https://doi.org/10.1016/j.physb.2023.415539\">10.1016/j.physb.2023.415539</a>","apa":"Gupta, S. L., Singh, S., Kumar, S., Anupam, U., Thakur, S. S., Kumar, A., … Diwaker, D. (2024). Ab-initio stability of Iridium based newly proposed full and quaternary heusler alloys. <i>Physica B: Condensed Matter</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.physb.2023.415539\">https://doi.org/10.1016/j.physb.2023.415539</a>","ieee":"S. L. Gupta <i>et al.</i>, “Ab-initio stability of Iridium based newly proposed full and quaternary heusler alloys,” <i>Physica B: Condensed Matter</i>, vol. 674, no. 2. Elsevier, 2024.","ista":"Gupta SL, Singh S, Kumar S, Anupam U, Thakur SS, Kumar A, Panwar S, Diwaker D. 2024. Ab-initio stability of Iridium based newly proposed full and quaternary heusler alloys. Physica B: Condensed Matter. 674(2), 415539.","mla":"Gupta, Shyam Lal, et al. “Ab-Initio Stability of Iridium Based Newly Proposed Full and Quaternary Heusler Alloys.” <i>Physica B: Condensed Matter</i>, vol. 674, no. 2, 415539, Elsevier, 2024, doi:<a href=\"https://doi.org/10.1016/j.physb.2023.415539\">10.1016/j.physb.2023.415539</a>."},"year":"2024","date_published":"2024-02-01T00:00:00Z","status":"public","publication_status":"published","language":[{"iso":"eng"}],"external_id":{"isi":["001127429000001"]},"quality_controlled":"1","author":[{"last_name":"Gupta","full_name":"Gupta, Shyam Lal","first_name":"Shyam Lal"},{"last_name":"Singh","first_name":"Saurabh","id":"12d625da-9cb3-11ed-9667-af09d37d3f0a","orcid":"0000-0003-2209-5269","full_name":"Singh, Saurabh"},{"last_name":"Kumar","full_name":"Kumar, Sumit","first_name":"Sumit"},{"full_name":"Anupam, Unknown","first_name":"Unknown","last_name":"Anupam"},{"full_name":"Thakur, Samjeet Singh","first_name":"Samjeet Singh","last_name":"Thakur"},{"last_name":"Kumar","full_name":"Kumar, Ashish","first_name":"Ashish"},{"last_name":"Panwar","first_name":"Sanjay","full_name":"Panwar, Sanjay"},{"last_name":"Diwaker","full_name":"Diwaker, D.","first_name":"D."}],"intvolume":"       674","issue":"2","publisher":"Elsevier","abstract":[{"lang":"eng","text":"In order to demonstrate the stability of newly proposed iridium-based Ir2Cr(In,Sn) and IrRhCr(In,Sn) heusler alloys, we present ab-initio analysis of these alloys by examining various properties to prove their stability. The stability of these alloys can be inferred from different cohesive and formation energies as well as positive phonon frequencies. Their electronic structure results indicate that they are semi-metals in nature. The magnetic moments are computed using the Slater-Pauling formula and exhibit a high value, with the Cr atom contributing the most in all alloys. Mulliken’s charge analysis results show that our alloys contain a range of linkages, mainly ionic and covalent ones. The ductility and mechanical stability of these alloys are confirmed by elastic constants viz. Poisson’s ratio, Pugh’s ratio, and many different types of elastic moduli."}],"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","date_updated":"2025-09-04T11:29:46Z","title":"Ab-initio stability of Iridium based newly proposed full and quaternary heusler alloys","publication":"Physica B: Condensed Matter","date_created":"2023-12-10T23:00:56Z"},{"article_type":"original","article_number":"117168","doi":"10.1016/j.ijms.2023.117168","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"day":"01","publication_identifier":{"issn":["1387-3806"]},"volume":495,"_id":"14653","month":"01","type":"journal_article","oa_version":"Published Version","department":[{"_id":"GradSch"}],"ddc":["540"],"isi":1,"scopus_import":"1","article_processing_charge":"Yes (in subscription journal)","has_accepted_license":"1","author":[{"full_name":"Kluibenschedl, Florian","id":"7499e70e-eb2c-11ec-b98b-f925648bc9d9","first_name":"Florian","last_name":"Kluibenschedl"},{"last_name":"Ploner","full_name":"Ploner, Anna","first_name":"Anna"},{"last_name":"Meisenbichler","full_name":"Meisenbichler, Christina","first_name":"Christina"},{"last_name":"Konrat","first_name":"Robert","full_name":"Konrat, Robert"},{"last_name":"Müller","first_name":"Thomas","full_name":"Müller, Thomas"}],"intvolume":"       495","language":[{"iso":"eng"}],"external_id":{"isi":["001125054400001"]},"quality_controlled":"1","file_date_updated":"2024-07-16T08:27:34Z","citation":{"chicago":"Kluibenschedl, Florian, Anna Ploner, Christina Meisenbichler, Robert Konrat, and Thomas Müller. “Advanced Motion Tracking for Interactive Mass Spectrometry Imaging (IMSI).” <i>International Journal of Mass Spectrometry</i>. Elsevier, 2024. <a href=\"https://doi.org/10.1016/j.ijms.2023.117168\">https://doi.org/10.1016/j.ijms.2023.117168</a>.","short":"F. Kluibenschedl, A. Ploner, C. Meisenbichler, R. Konrat, T. Müller, International Journal of Mass Spectrometry 495 (2024).","mla":"Kluibenschedl, Florian, et al. “Advanced Motion Tracking for Interactive Mass Spectrometry Imaging (IMSI).” <i>International Journal of Mass Spectrometry</i>, vol. 495, 117168, Elsevier, 2024, doi:<a href=\"https://doi.org/10.1016/j.ijms.2023.117168\">10.1016/j.ijms.2023.117168</a>.","ista":"Kluibenschedl F, Ploner A, Meisenbichler C, Konrat R, Müller T. 2024. Advanced motion tracking for interactive mass spectrometry imaging (IMSI). International Journal of Mass Spectrometry. 495, 117168.","ieee":"F. Kluibenschedl, A. Ploner, C. Meisenbichler, R. Konrat, and T. Müller, “Advanced motion tracking for interactive mass spectrometry imaging (IMSI),” <i>International Journal of Mass Spectrometry</i>, vol. 495. Elsevier, 2024.","apa":"Kluibenschedl, F., Ploner, A., Meisenbichler, C., Konrat, R., &#38; Müller, T. (2024). Advanced motion tracking for interactive mass spectrometry imaging (IMSI). <i>International Journal of Mass Spectrometry</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.ijms.2023.117168\">https://doi.org/10.1016/j.ijms.2023.117168</a>","ama":"Kluibenschedl F, Ploner A, Meisenbichler C, Konrat R, Müller T. Advanced motion tracking for interactive mass spectrometry imaging (IMSI). <i>International Journal of Mass Spectrometry</i>. 2024;495. doi:<a href=\"https://doi.org/10.1016/j.ijms.2023.117168\">10.1016/j.ijms.2023.117168</a>"},"publication_status":"published","status":"public","date_published":"2024-01-01T00:00:00Z","year":"2024","publication":"International Journal of Mass Spectrometry","title":"Advanced motion tracking for interactive mass spectrometry imaging (IMSI)","acknowledgement":"We would like to thank Marco Sealey Cardona, PhD for help with the mouse brain samples and acknowledge the financial support by 1669 Förderkreis of the University of Innsbruck, Austria Wirtschaftsservice (AWS), D. Swarovski KG and Tyrolean Science Fund (TWF).","date_created":"2023-12-10T23:00:57Z","date_updated":"2025-09-04T11:30:59Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","file":[{"date_updated":"2024-07-16T08:27:34Z","access_level":"open_access","success":1,"date_created":"2024-07-16T08:27:34Z","file_id":"17256","file_name":"2024_IJMS_Kluibenschedl.pdf","file_size":3003139,"creator":"dernst","checksum":"6c5eb6dc07af70a59251d2c6fed38894","content_type":"application/pdf","relation":"main_file"}],"abstract":[{"lang":"eng","text":"Mass spectrometry imaging (MSI) is a powerful analytical technique for the two-dimensional (2D) localization of chemicals on surfaces. Conventional MSI experiments require to predefine the surface of interest based on photographic or microscopic images. Typically, these boundaries can no longer be changed or adjusted once the experiment has been started. In terms of a more interactive approach we recently developed a pen-like ionization interface which is directly connected to the mass spectrometer. The device allows the user to ionize chemicals by desorption electrospray ionization (DESI) and to freely move the interface over a surface of interest. A mini camera, which is mounted on the tip of the pen, magnifies the desorption area and enables a simple positioning of the pen. The combination of optical data from the camera module and chemical data obtained by mass analysis facilitates a novel type of imaging experiment: interactive mass spectrometry imaging (IMSI). For this application, we present a novel approach for a robust, optical flow-based motion detection. While the live video stream from the camera is used to track the pen's motion across the surface a post-acquisition algorithm correlates the coordinates of the pen trajectory with respective mass spectra obtained from a simultaneous mass spectrometric data acquisition. This algorithm is no longer dependent on a single, manually applied optical marker on the sample surface, which has to be visible on all video frames throughout the analysis. The advanced DESI-IMSI method was successfully tested on inkjet-printed letters as well as mouse brain tissue samples. Validation of the results was done by comparing DESI-IMSI with standard DESI-MSI data."}],"oa":1,"publisher":"Elsevier"},{"file":[{"file_name":"2024_BulletinLondonMathSoc_Ivanov.pdf","file_size":111756,"creator":"dernst","checksum":"30ea0694757bc668cf7cd15ae357b35e","relation":"main_file","content_type":"application/pdf","access_level":"open_access","date_updated":"2024-07-16T10:35:10Z","date_created":"2024-07-16T10:35:10Z","success":1,"file_id":"17259"}],"abstract":[{"lang":"eng","text":"The classical Steinitz theorem states that if the origin belongs to the interior of the convex hull of a set 𝑆⊂ℝ𝑑, then there are at most 2𝑑 points of 𝑆 whose convex hull contains the origin in the interior. Bárány, Katchalski,and Pach proved the following quantitative version of Steinitz’s theorem. Let 𝑄 be a convex polytope in ℝ𝑑 containing the standard Euclidean unit ball 𝐁𝑑. Then there exist at most 2𝑑 vertices of 𝑄 whose convex hull 𝑄′ satisfies 𝑟𝐁𝑑⊂𝑄′ with 𝑟⩾𝑑−2𝑑. They conjectured that 𝑟⩾𝑐𝑑−1∕2 holds with a universal constant 𝑐>0. We prove 𝑟⩾15𝑑2, the first polynomial lower bound on 𝑟. Furthermore, we show that 𝑟 is not greater than 2/√𝑑."}],"oa":1,"publisher":"London Mathematical Society","publication":"Bulletin of the London Mathematical Society","title":"Quantitative Steinitz theorem: A polynomial bound","acknowledgement":"M.N. was supported by the János Bolyai Scholarship of the Hungarian Academy of Sciences aswell as the National Research, Development and Innovation Fund (NRDI) grants K119670 andK131529, and the ÚNKP-22-5 New National Excellence Program of the Ministry for Innovationand Technology from the source of the NRDI as well as the ELTE TKP 2021-NKTA-62 fundingscheme","date_created":"2023-12-10T23:00:58Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","arxiv":1,"date_updated":"2025-09-04T11:31:49Z","language":[{"iso":"eng"}],"external_id":{"isi":["001113277100001"],"arxiv":["2212.04308"]},"quality_controlled":"1","citation":{"chicago":"Ivanov, Grigory, and Márton Naszódi. “Quantitative Steinitz Theorem: A Polynomial Bound.” <i>Bulletin of the London Mathematical Society</i>. London Mathematical Society, 2024. <a href=\"https://doi.org/10.1112/blms.12965\">https://doi.org/10.1112/blms.12965</a>.","short":"G. Ivanov, M. Naszódi, Bulletin of the London Mathematical Society 56 (2024) 796–802.","mla":"Ivanov, Grigory, and Márton Naszódi. “Quantitative Steinitz Theorem: A Polynomial Bound.” <i>Bulletin of the London Mathematical Society</i>, vol. 56, no. 2, London Mathematical Society, 2024, pp. 796–802, doi:<a href=\"https://doi.org/10.1112/blms.12965\">10.1112/blms.12965</a>.","ista":"Ivanov G, Naszódi M. 2024. Quantitative Steinitz theorem: A polynomial bound. Bulletin of the London Mathematical Society. 56(2), 796–802.","ieee":"G. Ivanov and M. Naszódi, “Quantitative Steinitz theorem: A polynomial bound,” <i>Bulletin of the London Mathematical Society</i>, vol. 56, no. 2. London Mathematical Society, pp. 796–802, 2024.","apa":"Ivanov, G., &#38; Naszódi, M. (2024). Quantitative Steinitz theorem: A polynomial bound. <i>Bulletin of the London Mathematical Society</i>. London Mathematical Society. <a href=\"https://doi.org/10.1112/blms.12965\">https://doi.org/10.1112/blms.12965</a>","ama":"Ivanov G, Naszódi M. Quantitative Steinitz theorem: A polynomial bound. <i>Bulletin of the London Mathematical Society</i>. 2024;56(2):796-802. doi:<a href=\"https://doi.org/10.1112/blms.12965\">10.1112/blms.12965</a>"},"file_date_updated":"2024-07-16T10:35:10Z","corr_author":"1","publication_status":"published","status":"public","date_published":"2024-02-01T00:00:00Z","year":"2024","has_accepted_license":"1","author":[{"full_name":"Ivanov, Grigory","id":"87744F66-5C6F-11EA-AFE0-D16B3DDC885E","first_name":"Grigory","last_name":"Ivanov"},{"full_name":"Naszódi, Márton","first_name":"Márton","last_name":"Naszódi"}],"issue":"2","intvolume":"        56","page":"796-802","department":[{"_id":"UlWa"}],"isi":1,"ddc":["510"],"scopus_import":"1","article_processing_charge":"Yes (via OA deal)","month":"02","type":"journal_article","oa_version":"Published Version","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"doi":"10.1112/blms.12965","day":"01","publication_identifier":{"eissn":["1469-2120"],"issn":["0024-6093"]},"volume":56,"_id":"14660","article_type":"original"},{"publisher":"IEEE","oa":1,"abstract":[{"lang":"eng","text":"We derive lower bounds on the maximal rates for multiple packings in high-dimensional Euclidean spaces. For any N > 0 and L ∈ Z ≥2 , a multiple packing is a set C of points in R n such that any point in R n lies in the intersection of at most L - 1 balls of radius √ nN around points in C . This is a natural generalization of the sphere packing problem. We study the multiple packing problem for both bounded point sets whose points have norm at most √ nP for some constant P > 0, and unbounded point sets whose points are allowed to be anywhere in R n . Given a well-known connection with coding theory, multiple packings can be viewed as the Euclidean analog of list-decodable codes, which are well-studied over finite fields. We derive the best known lower bounds on the optimal multiple packing density. This is accomplished by establishing an inequality which relates the list-decoding error exponent for additive white Gaussian noise channels, a quantity of average-case nature, to the list-decoding radius, a quantity of worst-case nature. We also derive novel bounds on the list-decoding error exponent for infinite constellations and closed-form expressions for the list-decoding error exponents for the power-constrained AWGN channel, which may be of independent interest beyond multiple packing."}],"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2211.04408"}],"arxiv":1,"date_updated":"2025-09-04T11:32:49Z","acknowledgement":"The work of Yihan Zhang was supported by the European Union’s Horizon 2020 Research and Innovation Programme under Grant 682203-ERC-[Inf-Speed-Tradeoff]. The work of Shashank Vatedka was supported in part by the Core Research Grant from the Science and\r\nEngineering Research Board, India, under Grant CRG/2022/004464; and in\r\npart by the Department of Science and Technology (DST), India, under Grant\r\nDST/INT/RUS/RSF/P-41/2020 (TPN No. 65025).","date_created":"2023-12-10T23:01:00Z","publication":"IEEE Transactions on Information Theory","title":"Multiple packing: Lower bounds via error exponents","status":"public","publication_status":"published","date_published":"2024-02-01T00:00:00Z","year":"2024","citation":{"mla":"Zhang, Yihan, and Shashank Vatedka. “Multiple Packing: Lower Bounds via Error Exponents.” <i>IEEE Transactions on Information Theory</i>, vol. 70, no. 2, IEEE, 2024, pp. 1008–39, doi:<a href=\"https://doi.org/10.1109/TIT.2023.3334032\">10.1109/TIT.2023.3334032</a>.","ista":"Zhang Y, Vatedka S. 2024. Multiple packing: Lower bounds via error exponents. IEEE Transactions on Information Theory. 70(2), 1008–1039.","ama":"Zhang Y, Vatedka S. Multiple packing: Lower bounds via error exponents. <i>IEEE Transactions on Information Theory</i>. 2024;70(2):1008-1039. doi:<a href=\"https://doi.org/10.1109/TIT.2023.3334032\">10.1109/TIT.2023.3334032</a>","ieee":"Y. Zhang and S. Vatedka, “Multiple packing: Lower bounds via error exponents,” <i>IEEE Transactions on Information Theory</i>, vol. 70, no. 2. IEEE, pp. 1008–1039, 2024.","apa":"Zhang, Y., &#38; Vatedka, S. (2024). Multiple packing: Lower bounds via error exponents. <i>IEEE Transactions on Information Theory</i>. IEEE. <a href=\"https://doi.org/10.1109/TIT.2023.3334032\">https://doi.org/10.1109/TIT.2023.3334032</a>","chicago":"Zhang, Yihan, and Shashank Vatedka. “Multiple Packing: Lower Bounds via Error Exponents.” <i>IEEE Transactions on Information Theory</i>. IEEE, 2024. <a href=\"https://doi.org/10.1109/TIT.2023.3334032\">https://doi.org/10.1109/TIT.2023.3334032</a>.","short":"Y. Zhang, S. Vatedka, IEEE Transactions on Information Theory 70 (2024) 1008–1039."},"corr_author":"1","quality_controlled":"1","external_id":{"isi":["001166812100008"],"arxiv":["2211.04408"]},"language":[{"iso":"eng"}],"issue":"2","intvolume":"        70","author":[{"last_name":"Zhang","id":"2ce5da42-b2ea-11eb-bba5-9f264e9d002c","orcid":"0000-0002-6465-6258","full_name":"Zhang, Yihan","first_name":"Yihan"},{"first_name":"Shashank","full_name":"Vatedka, Shashank","last_name":"Vatedka"}],"article_processing_charge":"No","isi":1,"scopus_import":"1","page":"1008-1039","department":[{"_id":"MaMo"}],"oa_version":"Preprint","month":"02","type":"journal_article","volume":70,"_id":"14665","publication_identifier":{"issn":["0018-9448"],"eissn":["1557-9654"]},"day":"01","doi":"10.1109/TIT.2023.3334032","article_type":"original"},{"department":[{"_id":"StFr"}],"page":"392-411","scopus_import":"1","isi":1,"article_processing_charge":"No","type":"journal_article","month":"01","oa_version":"None","doi":"10.1039/d3fd90062b","day":"29","publication_identifier":{"eissn":["1364-5498"],"issn":["1359-6640"]},"_id":"14701","volume":248,"article_type":"letter_note","publisher":"Royal Society of Chemistry","title":"Towards practical metal–oxygen batteries: General discussion","publication":"Faraday Discussions","keyword":["Physical and Theoretical Chemistry"],"date_created":"2023-12-20T10:48:09Z","date_updated":"2025-09-04T11:34:30Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","pmid":1,"external_id":{"isi":["001130090400001"],"pmid":["38112202"]},"language":[{"iso":"eng"}],"quality_controlled":"1","citation":{"chicago":"Archer, Lynden A., Peter G. Bruce, Ernesto J. Calvo, Daniel Dewar, James H. J. Ellison, Stefan Alexander Freunberger, Xiangwen Gao, et al. “Towards Practical Metal–Oxygen Batteries: General Discussion.” <i>Faraday Discussions</i>. Royal Society of Chemistry, 2024. <a href=\"https://doi.org/10.1039/d3fd90062b\">https://doi.org/10.1039/d3fd90062b</a>.","short":"L.A. Archer, P.G. Bruce, E.J. Calvo, D. Dewar, J.H.J. Ellison, S.A. Freunberger, X. Gao, L.J. Hardwick, G. Horwitz, J. Janek, L.R. Johnson, J.W. Jordan, S. Matsuda, S. Menkin, S. Mondal, Q. Qiu, T. Samarakoon, I. Temprano, K. Uosaki, G. Vailaya, E.D. Wachsman, Y. Wu, S. Ye, Faraday Discussions 248 (2024) 392–411.","mla":"Archer, Lynden A., et al. “Towards Practical Metal–Oxygen Batteries: General Discussion.” <i>Faraday Discussions</i>, vol. 248, Royal Society of Chemistry, 2024, pp. 392–411, doi:<a href=\"https://doi.org/10.1039/d3fd90062b\">10.1039/d3fd90062b</a>.","ista":"Archer LA, Bruce PG, Calvo EJ, Dewar D, Ellison JHJ, Freunberger SA, Gao X, Hardwick LJ, Horwitz G, Janek J, Johnson LR, Jordan JW, Matsuda S, Menkin S, Mondal S, Qiu Q, Samarakoon T, Temprano I, Uosaki K, Vailaya G, Wachsman ED, Wu Y, Ye S. 2024. Towards practical metal–oxygen batteries: General discussion. Faraday Discussions. 248, 392–411.","ieee":"L. A. Archer <i>et al.</i>, “Towards practical metal–oxygen batteries: General discussion,” <i>Faraday Discussions</i>, vol. 248. Royal Society of Chemistry, pp. 392–411, 2024.","apa":"Archer, L. A., Bruce, P. G., Calvo, E. J., Dewar, D., Ellison, J. H. J., Freunberger, S. A., … Ye, S. (2024). Towards practical metal–oxygen batteries: General discussion. <i>Faraday Discussions</i>. Royal Society of Chemistry. <a href=\"https://doi.org/10.1039/d3fd90062b\">https://doi.org/10.1039/d3fd90062b</a>","ama":"Archer LA, Bruce PG, Calvo EJ, et al. Towards practical metal–oxygen batteries: General discussion. <i>Faraday Discussions</i>. 2024;248:392-411. doi:<a href=\"https://doi.org/10.1039/d3fd90062b\">10.1039/d3fd90062b</a>"},"date_published":"2024-01-29T00:00:00Z","year":"2024","status":"public","publication_status":"published","author":[{"full_name":"Archer, Lynden A.","first_name":"Lynden A.","last_name":"Archer"},{"first_name":"Peter G.","full_name":"Bruce, Peter G.","last_name":"Bruce"},{"last_name":"Calvo","first_name":"Ernesto J.","full_name":"Calvo, Ernesto J."},{"full_name":"Dewar, Daniel","first_name":"Daniel","last_name":"Dewar"},{"last_name":"Ellison","first_name":"James H. J.","full_name":"Ellison, James H. J."},{"last_name":"Freunberger","orcid":"0000-0003-2902-5319","id":"A8CA28E6-CE23-11E9-AD2D-EC27E6697425","full_name":"Freunberger, Stefan Alexander","first_name":"Stefan Alexander"},{"last_name":"Gao","first_name":"Xiangwen","full_name":"Gao, Xiangwen"},{"full_name":"Hardwick, Laurence J.","first_name":"Laurence J.","last_name":"Hardwick"},{"full_name":"Horwitz, Gabriela","first_name":"Gabriela","last_name":"Horwitz"},{"first_name":"Jürgen","full_name":"Janek, Jürgen","last_name":"Janek"},{"full_name":"Johnson, Lee R.","first_name":"Lee R.","last_name":"Johnson"},{"first_name":"Jack W.","full_name":"Jordan, Jack W.","last_name":"Jordan"},{"last_name":"Matsuda","full_name":"Matsuda, Shoichi","first_name":"Shoichi"},{"last_name":"Menkin","full_name":"Menkin, Svetlana","first_name":"Svetlana"},{"last_name":"Mondal","id":"d25d21ef-dc8d-11ea-abe3-ec4576307f48","full_name":"Mondal, Soumyadip","first_name":"Soumyadip"},{"last_name":"Qiu","full_name":"Qiu, Qianyuan","first_name":"Qianyuan"},{"full_name":"Samarakoon, Thukshan","first_name":"Thukshan","last_name":"Samarakoon"},{"last_name":"Temprano","full_name":"Temprano, Israel","first_name":"Israel"},{"first_name":"Kohei","full_name":"Uosaki, Kohei","last_name":"Uosaki"},{"last_name":"Vailaya","first_name":"Ganesh","full_name":"Vailaya, Ganesh"},{"last_name":"Wachsman","full_name":"Wachsman, Eric D.","first_name":"Eric D."},{"first_name":"Yiying","full_name":"Wu, Yiying","last_name":"Wu"},{"first_name":"Shen","full_name":"Ye, Shen","last_name":"Ye"}],"intvolume":"       248"},{"page":"75-88","department":[{"_id":"StFr"}],"isi":1,"scopus_import":"1","article_processing_charge":"No","month":"01","type":"journal_article","oa_version":"None","day":"29","doi":"10.1039/d3fd90059b","publication_identifier":{"issn":["1359-6640"],"eissn":["1364-5498"]},"volume":248,"_id":"14702","article_type":"letter_note","publisher":"Royal Society of Chemistry","publication":"Faraday Discussions","keyword":["Physical and Theoretical Chemistry"],"title":"Materials for stable metal–oxygen battery cathodes: general discussion","date_created":"2023-12-20T10:49:43Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","date_updated":"2025-09-04T11:35:09Z","pmid":1,"language":[{"iso":"eng"}],"external_id":{"isi":["001130029600001"],"pmid":["38109098"]},"quality_controlled":"1","citation":{"apa":"Attard, G. A., Calvo, E. J., Curtiss, L. A., Dewar, D., Ellison, J. H. J., Gao, X., … Ye, S. (2024). Materials for stable metal–oxygen battery cathodes: general discussion. <i>Faraday Discussions</i>. Royal Society of Chemistry. <a href=\"https://doi.org/10.1039/d3fd90059b\">https://doi.org/10.1039/d3fd90059b</a>","ieee":"G. A. Attard <i>et al.</i>, “Materials for stable metal–oxygen battery cathodes: general discussion,” <i>Faraday Discussions</i>, vol. 248. Royal Society of Chemistry, pp. 75–88, 2024.","ama":"Attard GA, Calvo EJ, Curtiss LA, et al. Materials for stable metal–oxygen battery cathodes: general discussion. <i>Faraday Discussions</i>. 2024;248:75-88. doi:<a href=\"https://doi.org/10.1039/d3fd90059b\">10.1039/d3fd90059b</a>","ista":"Attard GA, Calvo EJ, Curtiss LA, Dewar D, Ellison JHJ, Gao X, Grey CP, Hardwick LJ, Horwitz G, Janek J, Johnson LR, Jordan JW, Matsuda S, Mondal S, Neale AR, Ortiz-Vitoriano N, Temprano I, Vailaya G, Wachsman ED, Wang H-H, Wu Y, Ye S. 2024. Materials for stable metal–oxygen battery cathodes: general discussion. Faraday Discussions. 248, 75–88.","mla":"Attard, Gary A., et al. “Materials for Stable Metal–Oxygen Battery Cathodes: General Discussion.” <i>Faraday Discussions</i>, vol. 248, Royal Society of Chemistry, 2024, pp. 75–88, doi:<a href=\"https://doi.org/10.1039/d3fd90059b\">10.1039/d3fd90059b</a>.","short":"G.A. Attard, E.J. Calvo, L.A. Curtiss, D. Dewar, J.H.J. Ellison, X. Gao, C.P. Grey, L.J. Hardwick, G. Horwitz, J. Janek, L.R. Johnson, J.W. Jordan, S. Matsuda, S. Mondal, A.R. Neale, N. Ortiz-Vitoriano, I. Temprano, G. Vailaya, E.D. Wachsman, H.-H. Wang, Y. Wu, S. Ye, Faraday Discussions 248 (2024) 75–88.","chicago":"Attard, Gary A., Ernesto J. Calvo, Larry A. Curtiss, Daniel Dewar, James H. J. Ellison, Xiangwen Gao, Clare P. Grey, et al. “Materials for Stable Metal–Oxygen Battery Cathodes: General Discussion.” <i>Faraday Discussions</i>. Royal Society of Chemistry, 2024. <a href=\"https://doi.org/10.1039/d3fd90059b\">https://doi.org/10.1039/d3fd90059b</a>."},"publication_status":"published","status":"public","year":"2024","date_published":"2024-01-29T00:00:00Z","author":[{"last_name":"Attard","full_name":"Attard, Gary A.","first_name":"Gary A."},{"full_name":"Calvo, Ernesto J.","first_name":"Ernesto J.","last_name":"Calvo"},{"full_name":"Curtiss, Larry A.","first_name":"Larry A.","last_name":"Curtiss"},{"full_name":"Dewar, Daniel","first_name":"Daniel","last_name":"Dewar"},{"first_name":"James H. J.","full_name":"Ellison, James H. J.","last_name":"Ellison"},{"first_name":"Xiangwen","full_name":"Gao, Xiangwen","last_name":"Gao"},{"last_name":"Grey","first_name":"Clare P.","full_name":"Grey, Clare P."},{"full_name":"Hardwick, Laurence J.","first_name":"Laurence J.","last_name":"Hardwick"},{"last_name":"Horwitz","full_name":"Horwitz, Gabriela","first_name":"Gabriela"},{"full_name":"Janek, Juergen","first_name":"Juergen","last_name":"Janek"},{"last_name":"Johnson","first_name":"Lee R.","full_name":"Johnson, Lee R."},{"first_name":"Jack W.","full_name":"Jordan, Jack W.","last_name":"Jordan"},{"first_name":"Shoichi","full_name":"Matsuda, Shoichi","last_name":"Matsuda"},{"first_name":"Soumyadip","id":"d25d21ef-dc8d-11ea-abe3-ec4576307f48","full_name":"Mondal, Soumyadip","last_name":"Mondal"},{"first_name":"Alex R.","full_name":"Neale, Alex R.","last_name":"Neale"},{"full_name":"Ortiz-Vitoriano, Nagore","first_name":"Nagore","last_name":"Ortiz-Vitoriano"},{"full_name":"Temprano, Israel","first_name":"Israel","last_name":"Temprano"},{"last_name":"Vailaya","full_name":"Vailaya, Ganesh","first_name":"Ganesh"},{"full_name":"Wachsman, Eric D.","first_name":"Eric D.","last_name":"Wachsman"},{"full_name":"Wang, Hsien-Hau","first_name":"Hsien-Hau","last_name":"Wang"},{"full_name":"Wu, Yiying","first_name":"Yiying","last_name":"Wu"},{"first_name":"Shen","full_name":"Ye, Shen","last_name":"Ye"}],"intvolume":"       248"},{"type":"journal_article","month":"11","oa_version":"Published Version","department":[{"_id":"GradSch"},{"_id":"ChWo"}],"scopus_import":"1","isi":1,"article_processing_charge":"Yes (via OA deal)","article_type":"original","doi":"10.1007/s10208-024-09686-3","day":"11","publication_identifier":{"issn":["1615-3375"],"eissn":["1615-3383"]},"project":[{"grant_number":"101045083","name":"Computational Discovery of Numerical Algorithms for Animation and Simulation of Natural Phenomena","_id":"34bc2376-11ca-11ed-8bc3-9a3b3961a088"}],"_id":"14703","title":"Quantitative convergence of a discretization of dynamic optimal transport using the dual formulation","keyword":["Optimal transport","Hamilton-Jacobi equation","convex optimization"],"publication":"Foundations of Computational Mathematics","date_created":"2023-12-21T10:14:37Z","acknowledgement":"The authors would like to thank Chris Wojtan for his continuous support and several interesting discussions. Part of this research was performed during two visits: one of SI to the BIDSA research center at Bocconi University, and one of HL to the Institute of Science and Technology Austria. Both host institutions are warmly acknowledged for the hospitality. HL is partially supported by the MUR-Prin 2022-202244A7YL “Gradient Flows and Non-Smooth Geometric Structures with Applications to Optimization and Machine Learning”, funded by the European Union - Next Generation EU. SI is supported in part by ERC Consolidator Grant 101045083 “CoDiNA” funded by the European Research Council.","date_updated":"2025-09-04T11:35:55Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","arxiv":1,"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1007/s10208-024-09686-3"}],"abstract":[{"text":"We present a discretization of the dynamic optimal transport problem for which we can obtain the convergence rate for the value of the transport cost to its continuous value when the temporal and spatial stepsize vanish. This convergence result does not require any regularity assumption on the measures, though experiments suggest that the rate is not sharp. Via an analysis of the duality gap we also obtain the convergence rates for the gradient of the optimal potentials and the velocity field under mild regularity assumptions. To obtain such rates we discretize the dual formulation of the dynamic optimal transport problem and use the mature literature related to the error due to discretizing the Hamilton-Jacobi equation.","lang":"eng"}],"OA_place":"publisher","oa":1,"publisher":"Springer Nature","author":[{"last_name":"Ishida","first_name":"Sadashige","id":"6F7C4B96-A8E9-11E9-A7CA-09ECE5697425","full_name":"Ishida, Sadashige"},{"first_name":"Hugo","full_name":"Lavenant, Hugo","last_name":"Lavenant"}],"language":[{"iso":"eng"}],"external_id":{"isi":["001352503300001"],"arxiv":["2312.12213"]},"quality_controlled":"1","OA_type":"hybrid","citation":{"ista":"Ishida S, Lavenant H. 2024. Quantitative convergence of a discretization of dynamic optimal transport using the dual formulation. Foundations of Computational Mathematics.","apa":"Ishida, S., &#38; Lavenant, H. (2024). Quantitative convergence of a discretization of dynamic optimal transport using the dual formulation. <i>Foundations of Computational Mathematics</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s10208-024-09686-3\">https://doi.org/10.1007/s10208-024-09686-3</a>","ama":"Ishida S, Lavenant H. Quantitative convergence of a discretization of dynamic optimal transport using the dual formulation. <i>Foundations of Computational Mathematics</i>. 2024. doi:<a href=\"https://doi.org/10.1007/s10208-024-09686-3\">10.1007/s10208-024-09686-3</a>","ieee":"S. Ishida and H. Lavenant, “Quantitative convergence of a discretization of dynamic optimal transport using the dual formulation,” <i>Foundations of Computational Mathematics</i>. Springer Nature, 2024.","mla":"Ishida, Sadashige, and Hugo Lavenant. “Quantitative Convergence of a Discretization of Dynamic Optimal Transport Using the Dual Formulation.” <i>Foundations of Computational Mathematics</i>, Springer Nature, 2024, doi:<a href=\"https://doi.org/10.1007/s10208-024-09686-3\">10.1007/s10208-024-09686-3</a>.","short":"S. Ishida, H. Lavenant, Foundations of Computational Mathematics (2024).","chicago":"Ishida, Sadashige, and Hugo Lavenant. “Quantitative Convergence of a Discretization of Dynamic Optimal Transport Using the Dual Formulation.” <i>Foundations of Computational Mathematics</i>. Springer Nature, 2024. <a href=\"https://doi.org/10.1007/s10208-024-09686-3\">https://doi.org/10.1007/s10208-024-09686-3</a>."},"corr_author":"1","year":"2024","date_published":"2024-11-11T00:00:00Z","publication_status":"epub_ahead","status":"public"},{"publisher":"Institute of Science and Technology Austria","article_processing_charge":"No","file":[{"creator":"melkrewi","file_name":"readme.txt.txt","file_size":847,"content_type":"text/plain","relation":"main_file","checksum":"bdaf1392867786634ec5466d528c36ca","date_updated":"2023-12-22T13:54:21Z","access_level":"open_access","success":1,"date_created":"2023-12-22T13:54:21Z","file_id":"14707"},{"checksum":"973e1cbdab923a71709782177980829f","content_type":"application/x-zip-compressed","relation":"main_file","file_name":"data_artemia_franciscana_genome.zip","file_size":343632753,"creator":"melkrewi","file_id":"14708","date_created":"2023-12-22T14:14:06Z","success":1,"access_level":"open_access","date_updated":"2023-12-22T14:14:06Z"}],"department":[{"_id":"GradSch"},{"_id":"BeVi"}],"abstract":[{"text":"Since the commercialization of brine shrimp (genus Artemia) in the 1950s, this lineage, and in particular the model species Artemia franciscana, has been the subject of extensive research. However, our understanding of the genetic mechanisms underlying various aspects of their reproductive biology, including sex determination, are still lacking. This is partly due to the scarcity of genomic resources for Artemia species and crustaceans in general. Here, we present a chromosome-level genome assembly of Artemia franciscana (Kellogg 1906), from the Great Salt Lake, USA. The genome is 1GB, and the majority of the genome (81%) is scaffolded into 21 linkage groups using a previously published high-density linkage map. We performed coverage and FST analyses using male and female genomic and transcriptomic reads to quantify the extent of differentiation between the Z and W chromosomes. Additionally, we quantified the expression levels in male and female heads and gonads and found further evidence for dosage compensation in this species.","lang":"eng"}],"ddc":["576"],"oa":1,"date_updated":"2025-09-04T12:05:42Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","type":"research_data","title":"Data from \"Chromosome-level assembly of Artemia franciscana sheds light on sex-chromosome differentiation\"","keyword":["sex chromosome evolution","genome assembly","dosage compensation"],"related_material":{"record":[{"id":"15009","relation":"used_in_publication","status":"public"}]},"month":"01","date_created":"2023-12-22T13:40:48Z","oa_version":"Published Version","file_date_updated":"2023-12-22T14:14:06Z","citation":{"ista":"Elkrewi MN. 2024. Data from ‘Chromosome-level assembly of Artemia franciscana sheds light on sex-chromosome differentiation’, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:14705\">10.15479/AT:ISTA:14705</a>.","apa":"Elkrewi, M. N. (2024). Data from “Chromosome-level assembly of Artemia franciscana sheds light on sex-chromosome differentiation.” Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:14705\">https://doi.org/10.15479/AT:ISTA:14705</a>","ieee":"M. N. Elkrewi, “Data from ‘Chromosome-level assembly of Artemia franciscana sheds light on sex-chromosome differentiation.’” Institute of Science and Technology Austria, 2024.","ama":"Elkrewi MN. Data from “Chromosome-level assembly of Artemia franciscana sheds light on sex-chromosome differentiation.” 2024. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:14705\">10.15479/AT:ISTA:14705</a>","mla":"Elkrewi, Marwan N. <i>Data from “Chromosome-Level Assembly of Artemia Franciscana Sheds Light on Sex-Chromosome Differentiation.”</i> Institute of Science and Technology Austria, 2024, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:14705\">10.15479/AT:ISTA:14705</a>.","short":"M.N. Elkrewi, (2024).","chicago":"Elkrewi, Marwan N. “Data from ‘Chromosome-Level Assembly of Artemia Franciscana Sheds Light on Sex-Chromosome Differentiation.’” Institute of Science and Technology Austria, 2024. <a href=\"https://doi.org/10.15479/AT:ISTA:14705\">https://doi.org/10.15479/AT:ISTA:14705</a>."},"corr_author":"1","_id":"14705","project":[{"_id":"34ae1506-11ca-11ed-8bc3-c14f4c474396","name":"The highjacking of meiosis for asexual reproduction","grant_number":"F8810"}],"date_published":"2024-01-02T00:00:00Z","year":"2024","status":"public","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"doi":"10.15479/AT:ISTA:14705","day":"02","author":[{"first_name":"Marwan N","full_name":"Elkrewi, Marwan N","orcid":"0000-0002-5328-7231","id":"0B46FACA-A8E1-11E9-9BD3-79D1E5697425","last_name":"Elkrewi"}],"has_accepted_license":"1","contributor":[{"id":"57854184-AAE0-11E9-8D04-98D6E5697425","first_name":"Vincent K","last_name":"Bett","contributor_type":"researcher"},{"contributor_type":"project_member","last_name":"Macon","id":"2A0848E2-F248-11E8-B48F-1D18A9856A87","first_name":"Ariana"},{"last_name":"Vicoso","orcid":"0000-0002-4579-8306","id":"49E1C5C6-F248-11E8-B48F-1D18A9856A87","first_name":"Beatriz","contributor_type":"supervisor"},{"id":"0B46FACA-A8E1-11E9-9BD3-79D1E5697425","orcid":"0000-0002-5328-7231","first_name":"Marwan N","last_name":"Elkrewi","contributor_type":"researcher"}]},{"article_number":"koad324","article_type":"original","volume":36,"_id":"14726","publication_identifier":{"issn":["1040-4651"],"eissn":["1532-298X"]},"doi":"10.1093/plcell/koad324","tmp":{"name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","short":"CC BY-NC-ND (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","image":"/images/cc_by_nc_nd.png"},"day":"01","oa_version":"Published Version","month":"05","type":"journal_article","article_processing_charge":"No","ddc":["580"],"scopus_import":"1","issue":"5","intvolume":"        36","author":[{"full_name":"Zhou, Liang-Zi","first_name":"Liang-Zi","last_name":"Zhou"},{"full_name":"Wang, Lele","first_name":"Lele","last_name":"Wang"},{"last_name":"Chen","first_name":"Xia","full_name":"Chen, Xia"},{"first_name":"Zengxiang","id":"f43371a3-09ff-11eb-8013-bd0c6a2f6de8","orcid":"0000-0001-9381-3577","full_name":"Ge, Zengxiang","last_name":"Ge"},{"last_name":"Mergner","first_name":"Julia","full_name":"Mergner, Julia"},{"last_name":"Li","full_name":"Li, Xingli","first_name":"Xingli"},{"last_name":"Küster","first_name":"Bernhard","full_name":"Küster, Bernhard"},{"first_name":"Gernot","full_name":"Längst, Gernot","last_name":"Längst"},{"full_name":"Qu, Li-Jia","first_name":"Li-Jia","last_name":"Qu"},{"full_name":"Dresselhaus, Thomas","first_name":"Thomas","last_name":"Dresselhaus"}],"has_accepted_license":"1","status":"public","publication_status":"published","extern":"1","date_published":"2024-05-01T00:00:00Z","year":"2024","citation":{"short":"L.-Z. Zhou, L. Wang, X. Chen, Z. Ge, J. Mergner, X. Li, B. Küster, G. Längst, L.-J. Qu, T. Dresselhaus, The Plant Cell 36 (2024).","chicago":"Zhou, Liang-Zi, Lele Wang, Xia Chen, Zengxiang Ge, Julia Mergner, Xingli Li, Bernhard Küster, Gernot Längst, Li-Jia Qu, and Thomas Dresselhaus. “The RALF Signaling Pathway Regulates Cell Wall Integrity during Pollen Tube Growth in Maize.” <i>The Plant Cell</i>. Oxford University Press, 2024. <a href=\"https://doi.org/10.1093/plcell/koad324\">https://doi.org/10.1093/plcell/koad324</a>.","ista":"Zhou L-Z, Wang L, Chen X, Ge Z, Mergner J, Li X, Küster B, Längst G, Qu L-J, Dresselhaus T. 2024. The RALF signaling pathway regulates cell wall integrity during pollen tube growth in maize. The Plant Cell. 36(5), koad324.","ieee":"L.-Z. Zhou <i>et al.</i>, “The RALF signaling pathway regulates cell wall integrity during pollen tube growth in maize,” <i>The Plant Cell</i>, vol. 36, no. 5. Oxford University Press, 2024.","apa":"Zhou, L.-Z., Wang, L., Chen, X., Ge, Z., Mergner, J., Li, X., … Dresselhaus, T. (2024). The RALF signaling pathway regulates cell wall integrity during pollen tube growth in maize. <i>The Plant Cell</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/plcell/koad324\">https://doi.org/10.1093/plcell/koad324</a>","ama":"Zhou L-Z, Wang L, Chen X, et al. The RALF signaling pathway regulates cell wall integrity during pollen tube growth in maize. <i>The Plant Cell</i>. 2024;36(5). doi:<a href=\"https://doi.org/10.1093/plcell/koad324\">10.1093/plcell/koad324</a>","mla":"Zhou, Liang-Zi, et al. “The RALF Signaling Pathway Regulates Cell Wall Integrity during Pollen Tube Growth in Maize.” <i>The Plant Cell</i>, vol. 36, no. 5, koad324, Oxford University Press, 2024, doi:<a href=\"https://doi.org/10.1093/plcell/koad324\">10.1093/plcell/koad324</a>."},"quality_controlled":"1","language":[{"iso":"eng"}],"external_id":{"pmid":["38142229"]},"date_updated":"2024-07-16T11:18:46Z","main_file_link":[{"url":"https://doi.org/10.1093/plcell/koad324","open_access":"1"}],"pmid":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_created":"2024-01-02T11:19:37Z","publication":"The Plant Cell","keyword":["Cell Biology","Plant Science"],"title":"The RALF signaling pathway regulates cell wall integrity during pollen tube growth in maize","publisher":"Oxford University Press","oa":1,"abstract":[{"text":"Autocrine signaling pathways regulated by RAPID ALKALINIZATION FACTORs (RALFs) control cell wall integrity during pollen tube germination and growth in Arabidopsis (Arabidopsis thaliana). To investigate the role of pollen-specific RALFs in another plant species, we combined gene expression data with phylogenetic and biochemical studies to identify candidate orthologs in maize (Zea mays). We show that Clade IB ZmRALF2/3 mutations, but not Clade III ZmRALF1/5 mutations, cause cell wall instability in the sub-apical region of the growing pollen tube. ZmRALF2/3 are mainly located in the cell wall and are partially able to complement the pollen germination defect of their Arabidopsis orthologs AtRALF4/19. Mutations in ZmRALF2/3 compromise pectin distribution patterns leading to altered cell wall organization and thickness culminating in pollen tube burst. Clade IB, but not Clade III ZmRALFs, strongly interact as ligands with the pollen-specific Catharanthus roseus RLK1-like (CrRLK1L) receptor kinases Zea mays FERONIA-like (ZmFERL) 4/7/9, LORELEI-like glycosylphosphatidylinositol-anchor (LLG) proteins Zea mays LLG 1 and 2 (ZmLLG1/2) and Zea mays pollen extension-like (PEX) cell wall proteins ZmPEX2/4. Notably, ZmFERL4 outcompetes ZmLLG2 and ZmPEX2 outcompetes ZmFERL4 for ZmRALF2 binding. Based on these data, we suggest that Clade IB RALFs act in a dual role as cell wall components and extracellular sensors to regulate cell wall integrity and thickness during pollen tube growth in maize and probably other plants.","lang":"eng"}]},{"page":"414-426","department":[{"_id":"StFr"}],"ddc":["540"],"isi":1,"scopus_import":"1","article_processing_charge":"Yes (in subscription journal)","month":"01","type":"journal_article","oa_version":"Published Version","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"day":"22","doi":"10.1021/acsaem.3c02223","publication_identifier":{"eissn":["2574-0962"]},"volume":7,"_id":"14733","project":[{"grant_number":"101034413","name":"IST-BRIDGE: International postdoctoral program","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c","call_identifier":"H2020"}],"article_type":"original","abstract":[{"lang":"eng","text":"Redox flow batteries (RFBs) rely on the development of cheap, highly soluble, and high-energy-density electrolytes. Several candidate quinones have already been investigated in the literature as two-electron anolytes or catholytes, benefiting from fast kinetics, high tunability, and low cost. Here, an investigation of nitrogen-rich fused heteroaromatic quinones was carried out to explore avenues for electrolyte development. These quinones were synthesized and screened by using electrochemical techniques. The most promising candidate, 4,8-dioxo-4,8-dihydrobenzo[1,2-d:4,5-d′]bis([1,2,3]triazole)-1,5-diide (−0.68 V(SHE)), was tested in both an asymmetric and symmetric full-cell setup resulting in capacity fade rates of 0.35% per cycle and 0.0124% per cycle, respectively. In situ ultraviolet-visible spectroscopy (UV–Vis), nuclear magnetic resonance (NMR), and electron paramagnetic resonance (EPR) spectroscopies were used to investigate the electrochemical stability of the charged species during operation. UV–Vis spectroscopy, supported by density functional theory (DFT) modeling, reaffirmed that the two-step charging mechanism observed during battery operation consisted of two, single-electron transfers. The radical concentration during battery operation and the degree of delocalization of the unpaired electron were quantified with NMR and EPR spectroscopy."}],"file":[{"success":1,"file_id":"17262","date_created":"2024-07-16T11:59:24Z","access_level":"open_access","date_updated":"2024-07-16T11:59:24Z","checksum":"2841e86a041d249ac0df2531b7f9aec1","relation":"main_file","content_type":"application/pdf","file_name":"2024_ACSAppElecMaterials_Jethwa.pdf","file_size":5607177,"creator":"dernst"}],"oa":1,"publisher":"American Chemical Society","ec_funded":1,"keyword":["Electrical and Electronic Engineering","Materials Chemistry","Electrochemistry","Energy Engineering and Power Technology","Chemical Engineering (miscellaneous)"],"publication":"ACS Applied Energy Materials","title":"Exploring the landscape of heterocyclic quinones for redox flow batteries","date_created":"2024-01-05T09:20:48Z","pmid":1,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","main_file_link":[{"url":"https://doi.org/10.1021/acsaem.3c02223","open_access":"1"}],"date_updated":"2025-09-04T11:36:32Z","language":[{"iso":"eng"}],"external_id":{"isi":["001146733200001"],"pmid":["38273966"]},"quality_controlled":"1","file_date_updated":"2024-07-16T11:59:24Z","citation":{"short":"R.B. Jethwa, D. Hey, R.N. Kerber, A.D. Bond, D.S. Wright, C.P. Grey, ACS Applied Energy Materials 7 (2024) 414–426.","chicago":"Jethwa, Rajesh B, Dominic Hey, Rachel N. Kerber, Andrew D. Bond, Dominic S. Wright, and Clare P. Grey. “Exploring the Landscape of Heterocyclic Quinones for Redox Flow Batteries.” <i>ACS Applied Energy Materials</i>. American Chemical Society, 2024. <a href=\"https://doi.org/10.1021/acsaem.3c02223\">https://doi.org/10.1021/acsaem.3c02223</a>.","apa":"Jethwa, R. B., Hey, D., Kerber, R. N., Bond, A. D., Wright, D. S., &#38; Grey, C. P. (2024). Exploring the landscape of heterocyclic quinones for redox flow batteries. <i>ACS Applied Energy Materials</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/acsaem.3c02223\">https://doi.org/10.1021/acsaem.3c02223</a>","ieee":"R. B. Jethwa, D. Hey, R. N. Kerber, A. D. Bond, D. S. Wright, and C. P. Grey, “Exploring the landscape of heterocyclic quinones for redox flow batteries,” <i>ACS Applied Energy Materials</i>, vol. 7, no. 2. American Chemical Society, pp. 414–426, 2024.","ama":"Jethwa RB, Hey D, Kerber RN, Bond AD, Wright DS, Grey CP. Exploring the landscape of heterocyclic quinones for redox flow batteries. <i>ACS Applied Energy Materials</i>. 2024;7(2):414-426. doi:<a href=\"https://doi.org/10.1021/acsaem.3c02223\">10.1021/acsaem.3c02223</a>","ista":"Jethwa RB, Hey D, Kerber RN, Bond AD, Wright DS, Grey CP. 2024. Exploring the landscape of heterocyclic quinones for redox flow batteries. ACS Applied Energy Materials. 7(2), 414–426.","mla":"Jethwa, Rajesh B., et al. “Exploring the Landscape of Heterocyclic Quinones for Redox Flow Batteries.” <i>ACS Applied Energy Materials</i>, vol. 7, no. 2, American Chemical Society, 2024, pp. 414–26, doi:<a href=\"https://doi.org/10.1021/acsaem.3c02223\">10.1021/acsaem.3c02223</a>."},"publication_status":"published","status":"public","date_published":"2024-01-22T00:00:00Z","year":"2024","has_accepted_license":"1","author":[{"first_name":"Rajesh B","id":"4cc538d5-803f-11ed-ab7e-8139573aad8f","full_name":"Jethwa, Rajesh B","orcid":"0000-0002-0404-4356","last_name":"Jethwa"},{"last_name":"Hey","first_name":"Dominic","full_name":"Hey, Dominic"},{"full_name":"Kerber, Rachel N.","first_name":"Rachel N.","last_name":"Kerber"},{"last_name":"Bond","first_name":"Andrew D.","full_name":"Bond, Andrew D."},{"full_name":"Wright, Dominic S.","first_name":"Dominic S.","last_name":"Wright"},{"full_name":"Grey, Clare P.","first_name":"Clare P.","last_name":"Grey"}],"issue":"2","intvolume":"         7"},{"publisher":"Wiley","abstract":[{"lang":"eng","text":"Developing cost-effective and high-performance thermoelectric (TE) materials to assemble efficient TE devices presents a multitude of challenges and opportunities. Cu3SbSe4 is a promising p-type TE material based on relatively earth abundant elements. However, the challenge lies in its poor electrical conductivity. Herein, an efficient and scalable solution-based approach is developed to synthesize high-quality Cu3SbSe4 nanocrystals doped with Pb at the Sb site. After ligand displacement and annealing treatments, the dried powders are consolidated into dense pellets, and their TE properties are investigated. Pb doping effectively increases the charge carrier concentration, resulting in a significant increase in electrical conductivity, while the Seebeck coefficients remain consistently high. The calculated band structure shows that Pb doping induces band convergence, thereby increasing the effective mass. Furthermore, the large ionic radius of Pb2+ results in the generation of additional point and plane defects and interphases, dramatically enhancing phonon scattering, which significantly decreases the lattice thermal conductivity at high temperatures. Overall, a maximum figure of merit (zTmax) ≈ 0.85 at 653 K is obtained in Cu3Sb0.97Pb0.03Se4. This represents a 1.6-fold increase compared to the undoped sample and exceeds most doped Cu3SbSe4-based materials produced by solid-state, demonstrating advantages of versatility and cost-effectiveness using a solution-based technology."}],"pmid":1,"date_updated":"2025-09-04T11:37:19Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","acknowledgement":"Y.L. acknowledges funding from the National Natural Science Foundation of China (NSFC) (Grants No. 22209034), the Innovation and Entrepreneurship Project of Overseas Returnees in Anhui Province (Grant No. 2022LCX002). K.H.L. acknowledges financial support from the National Natural Science Foundation of China (NSFC) (Grant No. 22208293). M.I. acknowledges financial support from ISTA and the Werner Siemens Foundation.","date_created":"2024-01-07T23:00:51Z","publication":"Small Methods","title":"Band engineering through Pb-doping of nanocrystal building blocks to enhance thermoelectric performance in Cu3SbSe4","status":"public","publication_status":"published","date_published":"2024-08-01T00:00:00Z","year":"2024","OA_type":"closed access","citation":{"chicago":"Wan, Shanhong, Shanshan Xiao, Mingquan Li, Xin Wang, Khak Ho Lim, Min Hong, Maria Ibáñez, Andreu Cabot, and Yu Liu. “Band Engineering through Pb-Doping of Nanocrystal Building Blocks to Enhance Thermoelectric Performance in Cu3SbSe4.” <i>Small Methods</i>. Wiley, 2024. <a href=\"https://doi.org/10.1002/smtd.202301377\">https://doi.org/10.1002/smtd.202301377</a>.","short":"S. Wan, S. Xiao, M. Li, X. Wang, K.H. Lim, M. Hong, M. Ibáñez, A. Cabot, Y. Liu, Small Methods 8 (2024).","mla":"Wan, Shanhong, et al. “Band Engineering through Pb-Doping of Nanocrystal Building Blocks to Enhance Thermoelectric Performance in Cu3SbSe4.” <i>Small Methods</i>, vol. 8, no. 8, 2301377, Wiley, 2024, doi:<a href=\"https://doi.org/10.1002/smtd.202301377\">10.1002/smtd.202301377</a>.","ama":"Wan S, Xiao S, Li M, et al. Band engineering through Pb-doping of nanocrystal building blocks to enhance thermoelectric performance in Cu3SbSe4. <i>Small Methods</i>. 2024;8(8). doi:<a href=\"https://doi.org/10.1002/smtd.202301377\">10.1002/smtd.202301377</a>","apa":"Wan, S., Xiao, S., Li, M., Wang, X., Lim, K. H., Hong, M., … Liu, Y. (2024). Band engineering through Pb-doping of nanocrystal building blocks to enhance thermoelectric performance in Cu3SbSe4. <i>Small Methods</i>. Wiley. <a href=\"https://doi.org/10.1002/smtd.202301377\">https://doi.org/10.1002/smtd.202301377</a>","ieee":"S. Wan <i>et al.</i>, “Band engineering through Pb-doping of nanocrystal building blocks to enhance thermoelectric performance in Cu3SbSe4,” <i>Small Methods</i>, vol. 8, no. 8. Wiley, 2024.","ista":"Wan S, Xiao S, Li M, Wang X, Lim KH, Hong M, Ibáñez M, Cabot A, Liu Y. 2024. Band engineering through Pb-doping of nanocrystal building blocks to enhance thermoelectric performance in Cu3SbSe4. Small Methods. 8(8), 2301377."},"quality_controlled":"1","external_id":{"pmid":["38152986"],"isi":["001133369800001"]},"language":[{"iso":"eng"}],"issue":"8","intvolume":"         8","author":[{"full_name":"Wan, Shanhong","first_name":"Shanhong","last_name":"Wan"},{"last_name":"Xiao","full_name":"Xiao, Shanshan","first_name":"Shanshan"},{"first_name":"Mingquan","full_name":"Li, Mingquan","last_name":"Li"},{"last_name":"Wang","first_name":"Xin","full_name":"Wang, Xin"},{"first_name":"Khak Ho","full_name":"Lim, Khak Ho","last_name":"Lim"},{"full_name":"Hong, Min","first_name":"Min","last_name":"Hong"},{"full_name":"Ibáñez, Maria","id":"43C61214-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5013-2843","first_name":"Maria","last_name":"Ibáñez"},{"last_name":"Cabot","full_name":"Cabot, Andreu","first_name":"Andreu"},{"last_name":"Liu","first_name":"Yu","orcid":"0000-0001-7313-6740","full_name":"Liu, Yu","id":"2A70014E-F248-11E8-B48F-1D18A9856A87"}],"article_processing_charge":"No","isi":1,"scopus_import":"1","department":[{"_id":"MaIb"}],"oa_version":"None","month":"08","type":"journal_article","volume":8,"project":[{"name":"HighTE: The Werner Siemens Laboratory for the High Throughput Discovery of Semiconductors for Waste Heat Recovery","_id":"9B8F7476-BA93-11EA-9121-9846C619BF3A"}],"_id":"14734","publication_identifier":{"eissn":["2366-9608"]},"day":"01","doi":"10.1002/smtd.202301377","article_number":"2301377","article_type":"original"},{"author":[{"last_name":"Lee","full_name":"Lee, Woojung","first_name":"Woojung"},{"last_name":"Li","first_name":"Liang","full_name":"Li, Liang"},{"first_name":"María","full_name":"Camarasa-Gómez, María","last_name":"Camarasa-Gómez"},{"full_name":"Hernangómez-Pérez, Daniel","first_name":"Daniel","last_name":"Hernangómez-Pérez"},{"last_name":"Roy","first_name":"Xavier","full_name":"Roy, Xavier"},{"last_name":"Evers","full_name":"Evers, Ferdinand","first_name":"Ferdinand"},{"last_name":"Inkpen","full_name":"Inkpen, Michael S.","first_name":"Michael S."},{"first_name":"Latha","orcid":"0000-0002-6957-6089","full_name":"Venkataraman, Latha","id":"9ebb78a5-cc0d-11ee-8322-fae086a32caf","last_name":"Venkataraman"}],"intvolume":"        15","citation":{"chicago":"Lee, Woojung, Liang Li, María Camarasa-Gómez, Daniel Hernangómez-Pérez, Xavier Roy, Ferdinand Evers, Michael S. Inkpen, and Latha Venkataraman. “Photooxidation Driven Formation of Fe-Au Linked Ferrocene-Based Single-Molecule Junctions.” <i>Nature Communications</i>. Springer Nature, 2024. <a href=\"https://doi.org/10.1038/s41467-024-45707-z\">https://doi.org/10.1038/s41467-024-45707-z</a>.","short":"W. Lee, L. Li, M. Camarasa-Gómez, D. Hernangómez-Pérez, X. Roy, F. Evers, M.S. Inkpen, L. Venkataraman, Nature Communications 15 (2024).","mla":"Lee, Woojung, et al. “Photooxidation Driven Formation of Fe-Au Linked Ferrocene-Based Single-Molecule Junctions.” <i>Nature Communications</i>, vol. 15, 1439, Springer Nature, 2024, doi:<a href=\"https://doi.org/10.1038/s41467-024-45707-z\">10.1038/s41467-024-45707-z</a>.","ieee":"W. Lee <i>et al.</i>, “Photooxidation driven formation of Fe-Au linked ferrocene-based single-molecule junctions,” <i>Nature Communications</i>, vol. 15. Springer Nature, 2024.","ama":"Lee W, Li L, Camarasa-Gómez M, et al. Photooxidation driven formation of Fe-Au linked ferrocene-based single-molecule junctions. <i>Nature Communications</i>. 2024;15. doi:<a href=\"https://doi.org/10.1038/s41467-024-45707-z\">10.1038/s41467-024-45707-z</a>","apa":"Lee, W., Li, L., Camarasa-Gómez, M., Hernangómez-Pérez, D., Roy, X., Evers, F., … Venkataraman, L. (2024). Photooxidation driven formation of Fe-Au linked ferrocene-based single-molecule junctions. <i>Nature Communications</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41467-024-45707-z\">https://doi.org/10.1038/s41467-024-45707-z</a>","ista":"Lee W, Li L, Camarasa-Gómez M, Hernangómez-Pérez D, Roy X, Evers F, Inkpen MS, Venkataraman L. 2024. Photooxidation driven formation of Fe-Au linked ferrocene-based single-molecule junctions. Nature Communications. 15, 1439."},"OA_type":"gold","date_published":"2024-02-16T00:00:00Z","year":"2024","extern":"1","publication_status":"published","status":"public","external_id":{"pmid":["38365892"]},"language":[{"iso":"eng"}],"quality_controlled":"1","date_updated":"2024-11-18T10:47:10Z","main_file_link":[{"url":"https://doi.org/10.1038/s41467-024-45707-z","open_access":"1"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","pmid":1,"title":"Photooxidation driven formation of Fe-Au linked ferrocene-based single-molecule junctions","publication":"Nature Communications","date_created":"2024-09-06T12:38:44Z","publisher":"Springer Nature","abstract":[{"lang":"eng","text":"Metal-metal contacts, though not yet widely realized, may provide exciting opportunities to serve as tunable and functional interfaces in single-molecule devices. One of the simplest components which might facilitate such binding interactions is the ferrocene group. Notably, direct bonds between the ferrocene iron center and metals such as Pd or Co have been demonstrated in molecular complexes comprising coordinating ligands attached to the cyclopentadienyl rings. Here, we demonstrate that ferrocene-based single-molecule devices with Fe-Au interfacial contact geometries form at room temperature in the absence of supporting coordinating ligands. Applying a photoredox reaction, we propose that ferrocene only functions effectively as a contact group when oxidized, binding to gold through a formal Fe<jats:sup>3+</jats:sup> center. This observation is further supported by a series of control measurements and density functional theory calculations. Our findings extend the scope of junction contact chemistries beyond those involving main group elements, lay the foundation for light switchable ferrocene-based single-molecule devices, and highlight new potential mechanistic function(s) of unsubstituted ferrocenium groups in synthetic processes."}],"OA_place":"publisher","oa":1,"article_number":"1439","article_type":"original","_id":"17852","volume":15,"day":"16","doi":"10.1038/s41467-024-45707-z","publication_identifier":{"issn":["2041-1723"]},"type":"journal_article","month":"02","oa_version":"Published Version","DOAJ_listed":"1","article_processing_charge":"Yes","scopus_import":"1"},{"article_processing_charge":"No","scopus_import":"1","page":"16920-16925","oa_version":"None","type":"journal_article","month":"06","_id":"17853","volume":146,"publication_identifier":{"issn":["0002-7863"],"eissn":["1520-5126"]},"day":"24","doi":"10.1021/jacs.4c05699","article_type":"original","publisher":"American Chemical Society","abstract":[{"lang":"eng","text":"Single-molecule one-dimensional topological insulator (1D TI) is a class of molecular wires that exhibit increasing conductance with wire length. This unique trend is due to the coupling between the two low-lying topological edge states of 1D TIs described by the Su–Schrieffer–Heeger model. In principle, this quantum phenomenon within 1D TIs can be utilized to achieve long-range gating in molecular conductors. Here, we study electron transport through a single-edge state of doubly oxidized oligophenylene bis(triarylamine) to understand the effect of the edge state coupling on conductance. We find that conductance is elevated by approximately 1 order of magnitude compared to a control molecule with the same conductance pathway. Density function theory calculations further support that the increase in conductance is due to the interaction between the edge states of 1D TIs. This work demonstrates a new gating paradigm in molecular electronics, while also providing a deeper understanding of how edge states interact and affect electron transport within 1D TIs."}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2024-11-18T10:51:21Z","pmid":1,"date_created":"2024-09-06T12:40:17Z","title":"Long-range gating in single-molecule one-dimensional topological insulators","publication":"Journal of the American Chemical Society","year":"2024","date_published":"2024-06-24T00:00:00Z","status":"public","publication_status":"published","extern":"1","citation":{"chicago":"Li, Liang, Shayan Louie, Nicholas M. Orchanian, Colin Nuckolls, and Latha Venkataraman. “Long-Range Gating in Single-Molecule One-Dimensional Topological Insulators.” <i>Journal of the American Chemical Society</i>. American Chemical Society, 2024. <a href=\"https://doi.org/10.1021/jacs.4c05699\">https://doi.org/10.1021/jacs.4c05699</a>.","short":"L. Li, S. Louie, N.M. Orchanian, C. Nuckolls, L. Venkataraman, Journal of the American Chemical Society 146 (2024) 16920–16925.","mla":"Li, Liang, et al. “Long-Range Gating in Single-Molecule One-Dimensional Topological Insulators.” <i>Journal of the American Chemical Society</i>, vol. 146, no. 24, American Chemical Society, 2024, pp. 16920–25, doi:<a href=\"https://doi.org/10.1021/jacs.4c05699\">10.1021/jacs.4c05699</a>.","ama":"Li L, Louie S, Orchanian NM, Nuckolls C, Venkataraman L. Long-range gating in single-molecule one-dimensional topological insulators. <i>Journal of the American Chemical Society</i>. 2024;146(24):16920-16925. doi:<a href=\"https://doi.org/10.1021/jacs.4c05699\">10.1021/jacs.4c05699</a>","ieee":"L. Li, S. Louie, N. M. Orchanian, C. Nuckolls, and L. Venkataraman, “Long-range gating in single-molecule one-dimensional topological insulators,” <i>Journal of the American Chemical Society</i>, vol. 146, no. 24. American Chemical Society, pp. 16920–16925, 2024.","apa":"Li, L., Louie, S., Orchanian, N. M., Nuckolls, C., &#38; Venkataraman, L. (2024). Long-range gating in single-molecule one-dimensional topological insulators. <i>Journal of the American Chemical Society</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/jacs.4c05699\">https://doi.org/10.1021/jacs.4c05699</a>","ista":"Li L, Louie S, Orchanian NM, Nuckolls C, Venkataraman L. 2024. Long-range gating in single-molecule one-dimensional topological insulators. Journal of the American Chemical Society. 146(24), 16920–16925."},"OA_type":"closed access","quality_controlled":"1","language":[{"iso":"eng"}],"external_id":{"pmid":["38832840"]},"intvolume":"       146","issue":"24","author":[{"full_name":"Li, Liang","first_name":"Liang","last_name":"Li"},{"first_name":"Shayan","full_name":"Louie, Shayan","last_name":"Louie"},{"full_name":"Orchanian, Nicholas M.","first_name":"Nicholas M.","last_name":"Orchanian"},{"full_name":"Nuckolls, Colin","first_name":"Colin","last_name":"Nuckolls"},{"first_name":"Latha","full_name":"Venkataraman, Latha","id":"9ebb78a5-cc0d-11ee-8322-fae086a32caf","orcid":"0000-0002-6957-6089","last_name":"Venkataraman"}]},{"article_type":"original","volume":101,"_id":"17854","publication_identifier":{"issn":["0021-9584"],"eissn":["1938-1328"]},"doi":"10.1021/acs.jchemed.3c01185","day":"14","oa_version":"None","month":"02","type":"journal_article","article_processing_charge":"No","scopus_import":"1","page":"1319-1324","issue":"3","intvolume":"       101","author":[{"last_name":"Prindle","full_name":"Prindle, Claudia R.","first_name":"Claudia R."},{"first_name":"Nicholas M.","full_name":"Orchanian, Nicholas M.","last_name":"Orchanian"},{"first_name":"Latha","full_name":"Venkataraman, Latha","id":"9ebb78a5-cc0d-11ee-8322-fae086a32caf","orcid":"0000-0002-6957-6089","last_name":"Venkataraman"},{"last_name":"Nuckolls","full_name":"Nuckolls, Colin","first_name":"Colin"}],"publication_status":"published","status":"public","extern":"1","date_published":"2024-02-14T00:00:00Z","year":"2024","OA_type":"closed access","citation":{"ista":"Prindle CR, Orchanian NM, Venkataraman L, Nuckolls C. 2024. Short-form videos as an emerging social media tool for STEM edutainment. Journal of Chemical Education. 101(3), 1319–1324.","ieee":"C. R. Prindle, N. M. Orchanian, L. Venkataraman, and C. Nuckolls, “Short-form videos as an emerging social media tool for STEM edutainment,” <i>Journal of Chemical Education</i>, vol. 101, no. 3. American Chemical Society, pp. 1319–1324, 2024.","ama":"Prindle CR, Orchanian NM, Venkataraman L, Nuckolls C. Short-form videos as an emerging social media tool for STEM edutainment. <i>Journal of Chemical Education</i>. 2024;101(3):1319-1324. doi:<a href=\"https://doi.org/10.1021/acs.jchemed.3c01185\">10.1021/acs.jchemed.3c01185</a>","apa":"Prindle, C. R., Orchanian, N. M., Venkataraman, L., &#38; Nuckolls, C. (2024). Short-form videos as an emerging social media tool for STEM edutainment. <i>Journal of Chemical Education</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/acs.jchemed.3c01185\">https://doi.org/10.1021/acs.jchemed.3c01185</a>","mla":"Prindle, Claudia R., et al. “Short-Form Videos as an Emerging Social Media Tool for STEM Edutainment.” <i>Journal of Chemical Education</i>, vol. 101, no. 3, American Chemical Society, 2024, pp. 1319–24, doi:<a href=\"https://doi.org/10.1021/acs.jchemed.3c01185\">10.1021/acs.jchemed.3c01185</a>.","short":"C.R. Prindle, N.M. Orchanian, L. Venkataraman, C. Nuckolls, Journal of Chemical Education 101 (2024) 1319–1324.","chicago":"Prindle, Claudia R., Nicholas M. Orchanian, Latha Venkataraman, and Colin Nuckolls. “Short-Form Videos as an Emerging Social Media Tool for STEM Edutainment.” <i>Journal of Chemical Education</i>. American Chemical Society, 2024. <a href=\"https://doi.org/10.1021/acs.jchemed.3c01185\">https://doi.org/10.1021/acs.jchemed.3c01185</a>."},"quality_controlled":"1","language":[{"iso":"eng"}],"date_updated":"2024-11-18T10:55:30Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_created":"2024-09-06T12:43:20Z","publication":"Journal of Chemical Education","title":"Short-form videos as an emerging social media tool for STEM edutainment","publisher":"American Chemical Society","abstract":[{"text":"As social media platforms continue to grow in popularity, there is an increasing need for science outreach teams to bring STEM content to the virtual landscape. Here, we highlight the use of short-form videos on our TikTok channel─@IvyLeagueScience─as a new way to approach science outreach. Through a combination of content production and data analytics, we were able to build an online platform with >150k followers, 3.6 million likes, and 18 million views. By bringing science to social media, we engage with students across the world, allowing them to experience science-based content. In this case study, we hope to encourage other scientific outreach teams to employ social media as a means of increasing visibility of scientists and STEM careers.","lang":"eng"}]},{"issue":"6","intvolume":"        24","author":[{"full_name":"Paoletta, Angela L.","first_name":"Angela L.","last_name":"Paoletta"},{"last_name":"Venkataraman","orcid":"0000-0002-6957-6089","id":"9ebb78a5-cc0d-11ee-8322-fae086a32caf","full_name":"Venkataraman, Latha","first_name":"Latha"}],"quality_controlled":"1","external_id":{"pmid":["38315038"]},"language":[{"iso":"eng"}],"status":"public","publication_status":"published","extern":"1","date_published":"2024-02-05T00:00:00Z","year":"2024","citation":{"ista":"Paoletta AL, Venkataraman L. 2024. Determining transmission characteristics from shot-noise-driven electroluminescence in single-molecule junctions. Nano Letters. 24(6), 1931–1935.","ama":"Paoletta AL, Venkataraman L. Determining transmission characteristics from shot-noise-driven electroluminescence in single-molecule junctions. <i>Nano Letters</i>. 2024;24(6):1931-1935. doi:<a href=\"https://doi.org/10.1021/acs.nanolett.3c04207\">10.1021/acs.nanolett.3c04207</a>","ieee":"A. L. Paoletta and L. Venkataraman, “Determining transmission characteristics from shot-noise-driven electroluminescence in single-molecule junctions,” <i>Nano Letters</i>, vol. 24, no. 6. American Chemical Society, pp. 1931–1935, 2024.","apa":"Paoletta, A. L., &#38; Venkataraman, L. (2024). Determining transmission characteristics from shot-noise-driven electroluminescence in single-molecule junctions. <i>Nano Letters</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/acs.nanolett.3c04207\">https://doi.org/10.1021/acs.nanolett.3c04207</a>","mla":"Paoletta, Angela L., and Latha Venkataraman. “Determining Transmission Characteristics from Shot-Noise-Driven Electroluminescence in Single-Molecule Junctions.” <i>Nano Letters</i>, vol. 24, no. 6, American Chemical Society, 2024, pp. 1931–35, doi:<a href=\"https://doi.org/10.1021/acs.nanolett.3c04207\">10.1021/acs.nanolett.3c04207</a>.","short":"A.L. Paoletta, L. Venkataraman, Nano Letters 24 (2024) 1931–1935.","chicago":"Paoletta, Angela L., and Latha Venkataraman. “Determining Transmission Characteristics from Shot-Noise-Driven Electroluminescence in Single-Molecule Junctions.” <i>Nano Letters</i>. American Chemical Society, 2024. <a href=\"https://doi.org/10.1021/acs.nanolett.3c04207\">https://doi.org/10.1021/acs.nanolett.3c04207</a>."},"date_created":"2024-09-06T12:44:24Z","publication":"Nano Letters","title":"Determining transmission characteristics from shot-noise-driven electroluminescence in single-molecule junctions","pmid":1,"date_updated":"2024-11-18T10:58:19Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","abstract":[{"lang":"eng","text":"Biased metal–molecule–metal junctions emit light through electroluminescence, a phenomenon at the intersection of molecular electronics and nanoplasmonics. This can occur when the junction plasmon mode is excited by inelastic electron current fluctuations. Here, we simultaneously measure the conductance and electroluminescence intensity from single-molecule junctions with time resolution in a solution environment at room temperature. We use current versus bias data to determine the molecular junction transport parameters and then relate these to the expected current shot noise. We find that the electroluminescence signal accurately matches the theoretical prediction of shot-noise-driven emission in a large fraction of the molecular junctions studied. This introduces a novel experimental method for qualitatively estimating finite-frequency shot noise in single-molecule junctions under ambient conditions. We further demonstrate that electroluminescence can be used to obtain the level alignment of the frontier orbital dominating transport in the molecular junction."}],"publisher":"American Chemical Society","article_type":"letter_note","publication_identifier":{"issn":["1530-6984","1530-6992"]},"day":"05","doi":"10.1021/acs.nanolett.3c04207","volume":24,"_id":"17855","oa_version":"None","month":"02","type":"journal_article","scopus_import":"1","page":"1931-1935","article_processing_charge":"No"},{"publication_identifier":{"eissn":["1520-5126"],"issn":["0002-7863"]},"day":"31","doi":"10.1021/jacs.3c14226","volume":146,"_id":"17856","article_type":"letter_note","scopus_import":"1","page":"3646-3650","article_processing_charge":"No","oa_version":"None","month":"01","type":"journal_article","quality_controlled":"1","language":[{"iso":"eng"}],"external_id":{"pmid":["38293735"]},"status":"public","extern":"1","publication_status":"published","date_published":"2024-01-31T00:00:00Z","year":"2024","citation":{"mla":"Prindle, Claudia R., et al. “Effective Gating in Single-Molecule Junctions through Fano Resonances.” <i>Journal of the American Chemical Society</i>, vol. 146, no. 6, American Chemical Society, 2024, pp. 3646–50, doi:<a href=\"https://doi.org/10.1021/jacs.3c14226\">10.1021/jacs.3c14226</a>.","ista":"Prindle CR, Shi W, Li L, Dahl Jensen J, Laursen BW, Steigerwald ML, Nuckolls C, Venkataraman L. 2024. Effective gating in single-molecule junctions through fano resonances. Journal of the American Chemical Society. 146(6), 3646–3650.","apa":"Prindle, C. R., Shi, W., Li, L., Dahl Jensen, J., Laursen, B. W., Steigerwald, M. L., … Venkataraman, L. (2024). Effective gating in single-molecule junctions through fano resonances. <i>Journal of the American Chemical Society</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/jacs.3c14226\">https://doi.org/10.1021/jacs.3c14226</a>","ieee":"C. R. Prindle <i>et al.</i>, “Effective gating in single-molecule junctions through fano resonances,” <i>Journal of the American Chemical Society</i>, vol. 146, no. 6. American Chemical Society, pp. 3646–3650, 2024.","ama":"Prindle CR, Shi W, Li L, et al. Effective gating in single-molecule junctions through fano resonances. <i>Journal of the American Chemical Society</i>. 2024;146(6):3646-3650. doi:<a href=\"https://doi.org/10.1021/jacs.3c14226\">10.1021/jacs.3c14226</a>","chicago":"Prindle, Claudia R., Wanzhuo Shi, Liang Li, Jesper Dahl Jensen, Bo W. Laursen, Michael L. Steigerwald, Colin Nuckolls, and Latha Venkataraman. “Effective Gating in Single-Molecule Junctions through Fano Resonances.” <i>Journal of the American Chemical Society</i>. American Chemical Society, 2024. <a href=\"https://doi.org/10.1021/jacs.3c14226\">https://doi.org/10.1021/jacs.3c14226</a>.","short":"C.R. Prindle, W. Shi, L. Li, J. Dahl Jensen, B.W. Laursen, M.L. Steigerwald, C. Nuckolls, L. Venkataraman, Journal of the American Chemical Society 146 (2024) 3646–3650."},"issue":"6","intvolume":"       146","author":[{"last_name":"Prindle","full_name":"Prindle, Claudia R.","first_name":"Claudia R."},{"last_name":"Shi","first_name":"Wanzhuo","full_name":"Shi, Wanzhuo"},{"full_name":"Li, Liang","first_name":"Liang","last_name":"Li"},{"last_name":"Dahl Jensen","full_name":"Dahl Jensen, Jesper","first_name":"Jesper"},{"first_name":"Bo W.","full_name":"Laursen, Bo W.","last_name":"Laursen"},{"first_name":"Michael L.","full_name":"Steigerwald, Michael L.","last_name":"Steigerwald"},{"first_name":"Colin","full_name":"Nuckolls, Colin","last_name":"Nuckolls"},{"last_name":"Venkataraman","orcid":"0000-0002-6957-6089","id":"9ebb78a5-cc0d-11ee-8322-fae086a32caf","full_name":"Venkataraman, Latha","first_name":"Latha"}],"abstract":[{"text":"The successful incorporation of molecules as active circuit elements relies on the ability to tune their electronic properties through chemical design. A synthetic strategy that has been used to manipulate and gate circuit conductance involves attaching a pendant substituent along the molecular conduction pathway. However, such a chemical gate has not yet been shown to significantly modify conductance. Here, we report a novel series of triarylmethylium and triangulenium carbocations gated by different substituents coupled to the delocalized conducting orbitals on the molecular backbone through a Fano resonance. By changing the pendant substituents to modulate the position of the Fano resonance and its coupling to the conducting orbitals, we can regulate the junction conductance by a remarkable factor of 450. This work thus provides a new design principle to enable effective chemical gating of single-molecule devices toward effective molecular transistors.","lang":"eng"}],"publisher":"American Chemical Society","date_created":"2024-09-06T12:45:11Z","publication":"Journal of the American Chemical Society","title":"Effective gating in single-molecule junctions through fano resonances","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","pmid":1,"date_updated":"2024-11-18T11:02:24Z"},{"date_updated":"2024-11-19T12:50:27Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","pmid":1,"title":"Solvent-mediated modulation of the Au–S bond in dithiol molecular junctions","publication":"Nano Letters","date_created":"2024-09-06T12:46:39Z","publisher":"American Chemical Society","abstract":[{"lang":"eng","text":"Gold–dithiol molecular junctions have been studied both experimentally and theoretically. However, the nature of the gold–thiolate bond as it relates to the solvent has seldom been investigated. It is known that solvents can impact the electronic structure of single-molecule junctions, but the correlation between the solvent and dithiol-linked single-molecule junction conductance is not well understood. We study molecular junctions formed with thiol-terminated phenylenes from both 1-chloronaphthalene and 1-bromonaphthalene solutions. We find that the most probable conductance and the distribution of conductances are both affected by the solvent. First-principles calculations show that junction conductance depends on the binding configurations (adatom, atop, and bridge) of the thiolate on the Au surface, as has been shown previously. More importantly, we find that brominated solvents can restrict the binding of thiols to specific Au sites. This mechanism offers new insight into the effects of the solvent environment on covalent bonding in molecular junctions."}],"author":[{"first_name":"Johnson","full_name":"Dalmieda, Johnson","last_name":"Dalmieda"},{"first_name":"Wanzhuo","full_name":"Shi, Wanzhuo","last_name":"Shi"},{"last_name":"Li","full_name":"Li, Liang","first_name":"Liang"},{"last_name":"Venkataraman","first_name":"Latha","orcid":"0000-0002-6957-6089","id":"9ebb78a5-cc0d-11ee-8322-fae086a32caf","full_name":"Venkataraman, Latha"}],"intvolume":"        24","issue":"2","OA_type":"closed access","citation":{"chicago":"Dalmieda, Johnson, Wanzhuo Shi, Liang Li, and Latha Venkataraman. “Solvent-Mediated Modulation of the Au–S Bond in Dithiol Molecular Junctions.” <i>Nano Letters</i>. American Chemical Society, 2024. <a href=\"https://doi.org/10.1021/acs.nanolett.3c04058\">https://doi.org/10.1021/acs.nanolett.3c04058</a>.","short":"J. Dalmieda, W. Shi, L. Li, L. Venkataraman, Nano Letters 24 (2024) 703–707.","mla":"Dalmieda, Johnson, et al. “Solvent-Mediated Modulation of the Au–S Bond in Dithiol Molecular Junctions.” <i>Nano Letters</i>, vol. 24, no. 2, American Chemical Society, 2024, pp. 703–07, doi:<a href=\"https://doi.org/10.1021/acs.nanolett.3c04058\">10.1021/acs.nanolett.3c04058</a>.","apa":"Dalmieda, J., Shi, W., Li, L., &#38; Venkataraman, L. (2024). Solvent-mediated modulation of the Au–S bond in dithiol molecular junctions. <i>Nano Letters</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/acs.nanolett.3c04058\">https://doi.org/10.1021/acs.nanolett.3c04058</a>","ama":"Dalmieda J, Shi W, Li L, Venkataraman L. Solvent-mediated modulation of the Au–S bond in dithiol molecular junctions. <i>Nano Letters</i>. 2024;24(2):703-707. doi:<a href=\"https://doi.org/10.1021/acs.nanolett.3c04058\">10.1021/acs.nanolett.3c04058</a>","ieee":"J. Dalmieda, W. Shi, L. Li, and L. Venkataraman, “Solvent-mediated modulation of the Au–S bond in dithiol molecular junctions,” <i>Nano Letters</i>, vol. 24, no. 2. American Chemical Society, pp. 703–707, 2024.","ista":"Dalmieda J, Shi W, Li L, Venkataraman L. 2024. Solvent-mediated modulation of the Au–S bond in dithiol molecular junctions. Nano Letters. 24(2), 703–707."},"date_published":"2024-01-04T00:00:00Z","year":"2024","extern":"1","status":"public","publication_status":"published","language":[{"iso":"eng"}],"external_id":{"pmid":["38175934"]},"quality_controlled":"1","type":"journal_article","month":"01","oa_version":"None","article_processing_charge":"No","page":"703-707","scopus_import":"1","article_type":"letter_note","_id":"17857","volume":24,"day":"04","doi":"10.1021/acs.nanolett.3c04058","publication_identifier":{"eissn":["1530-6992"],"issn":["1530-6984"]}}]