[{"department":[{"_id":"TiBr"}],"title":"Terminal singularities of the moduli space of curves on low degree hypersurfaces and the circle method","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"article_processing_charge":"No","citation":{"short":"J. Glas, M. Hase-Liu, ArXiv (n.d.).","ama":"Glas J, Hase-Liu M. Terminal singularities of the moduli space of curves on low degree hypersurfaces and the circle method. <i>arXiv</i>. doi:<a href=\"https://doi.org/10.48550/arXiv.2412.14923\">10.48550/arXiv.2412.14923</a>","chicago":"Glas, Jakob, and Matthew  Hase-Liu. “Terminal Singularities of the Moduli Space of Curves on Low Degree Hypersurfaces and the Circle Method.” <i>ArXiv</i>, n.d. <a href=\"https://doi.org/10.48550/arXiv.2412.14923\">https://doi.org/10.48550/arXiv.2412.14923</a>.","apa":"Glas, J., &#38; Hase-Liu, M. (n.d.). Terminal singularities of the moduli space of curves on low degree hypersurfaces and the circle method. <i>arXiv</i>. <a href=\"https://doi.org/10.48550/arXiv.2412.14923\">https://doi.org/10.48550/arXiv.2412.14923</a>","ieee":"J. Glas and M. Hase-Liu, “Terminal singularities of the moduli space of curves on low degree hypersurfaces and the circle method,” <i>arXiv</i>. .","mla":"Glas, Jakob, and Matthew Hase-Liu. “Terminal Singularities of the Moduli Space of Curves on Low Degree Hypersurfaces and the Circle Method.” <i>ArXiv</i>, doi:<a href=\"https://doi.org/10.48550/arXiv.2412.14923\">10.48550/arXiv.2412.14923</a>.","ista":"Glas J, Hase-Liu M. Terminal singularities of the moduli space of curves on low degree hypersurfaces and the circle method. arXiv, <a href=\"https://doi.org/10.48550/arXiv.2412.14923\">10.48550/arXiv.2412.14923</a>."},"publication_status":"draft","external_id":{"arxiv":["2412.14923"]},"doi":"10.48550/arXiv.2412.14923","oa_version":"Preprint","year":"2024","oa":1,"date_published":"2024-12-19T00:00:00Z","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","corr_author":"1","month":"12","publication":"arXiv","author":[{"first_name":"Jakob","full_name":"Glas, Jakob","id":"d6423cba-dc74-11ea-a0a7-ee61689ff5fb","last_name":"Glas"},{"first_name":"Matthew ","full_name":"Hase-Liu, Matthew ","last_name":"Hase-Liu"}],"abstract":[{"text":"We study the singularities of the moduli space of degree e maps from smooth genus g curves to an arbitrary smooth hypersurface of low degree. For e large compared to g, we show that these moduli spaces have at worst terminal singularities. Our main approach is to study the jet schemes of these moduli spaces by developing a suitable form of the circle method.","lang":"eng"}],"OA_place":"repository","_id":"19013","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2412.14923"}],"language":[{"iso":"eng"}],"type":"preprint","status":"public","related_material":{"record":[{"id":"18295","relation":"earlier_version","status":"public"}]},"arxiv":1,"date_created":"2025-02-07T12:04:11Z","date_updated":"2025-04-15T08:05:40Z","day":"19"},{"title":"A statistical approach to Monte Carlo denoising","article_processing_charge":"Yes (in subscription journal)","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"doi":"10.1145/3680528.3687591","external_id":{"isi":["001441591200068"]},"year":"2024","file":[{"checksum":"89f63b9237224362ec33430af9152700","creator":"dernst","file_size":14791980,"success":1,"content_type":"application/pdf","file_id":"19563","date_created":"2025-04-15T12:53:24Z","date_updated":"2025-04-15T12:53:24Z","access_level":"open_access","file_name":"2024_SIGGRAPH_Sakai.pdf","relation":"main_file"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"12","file_date_updated":"2025-04-15T12:53:24Z","has_accepted_license":"1","scopus_import":"1","publisher":"Association for Computing Machinery","ddc":["000"],"isi":1,"status":"public","conference":{"start_date":"2024-12-03","name":"SA: SIGGRAPH Asia","location":"Tokyo, Japan","end_date":"2024-12-06"},"date_created":"2025-02-16T23:02:34Z","date_updated":"2025-12-02T13:58:56Z","day":"03","acknowledgement":"We would like to thank Lukas Lipp for fruitful discussions, Károly Zsolnai-Fehér and Jaroslav Křivánek for valuable contributions to early versions of this work, and Bernhard Kerbl for help with our CUDA implementation. Moreover, we would like to thank the creators of the scenes we have used: Wig42 for “Wooden Staircase” (Fig. 1), “Grey and White Room” (Fig. S6), and “Modern Living Room” (Fig. S8); nacimus for “Bathroom” (Fig. 3, S5); NovaZeeke for “Japanese Classroom” (Fig. 4, 6); Beeple for “Zero-Day” (Fig. 8); Jay-Artist for “White Room” (Fig. S7); Mareck for “Contemporary Bathroom” (Fig. 2); Christian Freude for “Glass Caustics” (Fig. S10); and Benedikt Bitterli for “Veach Ajar” (Fig. 7, S2), “Veach MIS” (Fig. S4), and “Fur Ball” (Fig. S11). This work has received funding from the Vienna Science and Technology Fund (WWTF) project ICT22-028 (“Toward Optimal Path Guiding for Photorealistic Rendering”) and the Austrian Science Fund (FWF) project F 77 (SFB “Advanced Computational Design”).","quality_controlled":"1","publication_status":"published","citation":{"apa":"Sakai, H., Freude, C., Auzinger, T., Hahn, D., &#38; Wimmer, M. (2024). A statistical approach to Monte Carlo denoising. In <i>Proceedings - SIGGRAPH Asia 2024 Conference Papers</i>. Tokyo, Japan: Association for Computing Machinery. <a href=\"https://doi.org/10.1145/3680528.3687591\">https://doi.org/10.1145/3680528.3687591</a>","chicago":"Sakai, Hiroyuki, Christian Freude, Thomas Auzinger, David Hahn, and Michael Wimmer. “A Statistical Approach to Monte Carlo Denoising.” In <i>Proceedings - SIGGRAPH Asia 2024 Conference Papers</i>. Association for Computing Machinery, 2024. <a href=\"https://doi.org/10.1145/3680528.3687591\">https://doi.org/10.1145/3680528.3687591</a>.","ama":"Sakai H, Freude C, Auzinger T, Hahn D, Wimmer M. A statistical approach to Monte Carlo denoising. In: <i>Proceedings - SIGGRAPH Asia 2024 Conference Papers</i>. Association for Computing Machinery; 2024. doi:<a href=\"https://doi.org/10.1145/3680528.3687591\">10.1145/3680528.3687591</a>","short":"H. Sakai, C. Freude, T. Auzinger, D. Hahn, M. Wimmer, in:, Proceedings - SIGGRAPH Asia 2024 Conference Papers, Association for Computing Machinery, 2024.","ista":"Sakai H, Freude C, Auzinger T, Hahn D, Wimmer M. 2024. A statistical approach to Monte Carlo denoising. Proceedings - SIGGRAPH Asia 2024 Conference Papers. SA: SIGGRAPH Asia, 68.","mla":"Sakai, Hiroyuki, et al. “A Statistical Approach to Monte Carlo Denoising.” <i>Proceedings - SIGGRAPH Asia 2024 Conference Papers</i>, 68, Association for Computing Machinery, 2024, doi:<a href=\"https://doi.org/10.1145/3680528.3687591\">10.1145/3680528.3687591</a>.","ieee":"H. Sakai, C. Freude, T. Auzinger, D. Hahn, and M. Wimmer, “A statistical approach to Monte Carlo denoising,” in <i>Proceedings - SIGGRAPH Asia 2024 Conference Papers</i>, Tokyo, Japan, 2024."},"oa_version":"Published Version","oa":1,"date_published":"2024-12-03T00:00:00Z","publication":"Proceedings - SIGGRAPH Asia 2024 Conference Papers","author":[{"last_name":"Sakai","full_name":"Sakai, Hiroyuki","first_name":"Hiroyuki"},{"first_name":"Christian","full_name":"Freude, Christian","last_name":"Freude"},{"last_name":"Auzinger","orcid":"0000-0002-1546-3265","first_name":"Thomas","full_name":"Auzinger, Thomas","id":"4718F954-F248-11E8-B48F-1D18A9856A87"},{"first_name":"David","id":"357A6A66-F248-11E8-B48F-1D18A9856A87","full_name":"Hahn, David","last_name":"Hahn"},{"last_name":"Wimmer","full_name":"Wimmer, Michael","first_name":"Michael"}],"abstract":[{"lang":"eng","text":"The stochastic nature of modern Monte Carlo (MC) rendering methods inevitably produces noise in rendered images for a practical number of samples per pixel. The problem of denoising these images has been widely studied, with most recent methods relying on data-driven, pretrained neural networks. In contrast, in this paper we propose a statistical approach to the denoising problem, treating each pixel as a random variable and reasoning about its distribution. Considering a pixel of the noisy rendered image, we formulate fast pair-wise statistical tests—based on online estimators—to decide which of the nearby pixels to exclude from the denoising filter. We show that for symmetric pixel weights and normally distributed samples, the classical Welch t-test is optimal in terms of mean squared error. We then show how to extend this result to handle non-normal distributions, using more recent confidence-interval formulations in combination with the Box-Cox transformation. Our results show that our statistical denoising approach matches the performance of state-of-the-art neural image denoising without having to resort to any computation-intensive pretraining. Furthermore, our approach easily generalizes to other quantities besides pixel intensity, which we demonstrate by showing additional applications to Russian roulette path termination and multiple importance sampling."}],"OA_place":"publisher","_id":"19028","language":[{"iso":"eng"}],"type":"conference","OA_type":"hybrid","article_number":"68","publication_identifier":{"isbn":["9798400711312"]}},{"related_material":{"record":[{"relation":"earlier_version","status":"public","id":"254"}]},"publication_identifier":{"eissn":["1687-0247"],"issn":["1073-7928"]},"issue":"13","OA_type":"hybrid","volume":2024,"language":[{"iso":"eng"}],"type":"journal_article","_id":"19051","abstract":[{"lang":"eng","text":"This paper corrects an error in an earlier work of the author."}],"OA_place":"publisher","author":[{"full_name":"Browning, Timothy D","id":"35827D50-F248-11E8-B48F-1D18A9856A87","first_name":"Timothy D","orcid":"0000-0002-8314-0177","last_name":"Browning"}],"publication":"International Mathematics Research Notices","date_published":"2024-07-01T00:00:00Z","oa":1,"oa_version":"Published Version","citation":{"chicago":"Browning, Timothy D. “The Polynomial Sieve and Equal Sums of like Polynomials.” <i>International Mathematics Research Notices</i>. Oxford University Press, 2024. <a href=\"https://doi.org/10.1093/imrn/rnae066\">https://doi.org/10.1093/imrn/rnae066</a>.","ama":"Browning TD. The polynomial sieve and equal sums of like polynomials. <i>International Mathematics Research Notices</i>. 2024;2024(13):10165-10168. doi:<a href=\"https://doi.org/10.1093/imrn/rnae066\">10.1093/imrn/rnae066</a>","short":"T.D. Browning, International Mathematics Research Notices 2024 (2024) 10165–10168.","apa":"Browning, T. D. (2024). The polynomial sieve and equal sums of like polynomials. <i>International Mathematics Research Notices</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/imrn/rnae066\">https://doi.org/10.1093/imrn/rnae066</a>","mla":"Browning, Timothy D. “The Polynomial Sieve and Equal Sums of like Polynomials.” <i>International Mathematics Research Notices</i>, vol. 2024, no. 13, Oxford University Press, 2024, pp. 10165–68, doi:<a href=\"https://doi.org/10.1093/imrn/rnae066\">10.1093/imrn/rnae066</a>.","ieee":"T. D. Browning, “The polynomial sieve and equal sums of like polynomials,” <i>International Mathematics Research Notices</i>, vol. 2024, no. 13. Oxford University Press, pp. 10165–10168, 2024.","ista":"Browning TD. 2024. The polynomial sieve and equal sums of like polynomials. International Mathematics Research Notices. 2024(13), 10165–10168."},"publication_status":"published","quality_controlled":"1","day":"01","date_updated":"2025-09-09T12:16:45Z","date_created":"2025-02-18T07:15:50Z","intvolume":"      2024","status":"public","isi":1,"ddc":["510"],"publisher":"Oxford University Press","scopus_import":"1","has_accepted_license":"1","file_date_updated":"2025-02-18T07:56:36Z","month":"07","corr_author":"1","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","file":[{"creator":"dernst","checksum":"b625b8adf018d2a97591813c1fc17b96","file_size":205750,"relation":"main_file","file_name":"2024_IMRN_Browning.pdf","access_level":"open_access","content_type":"application/pdf","success":1,"date_created":"2025-02-18T07:56:36Z","date_updated":"2025-02-18T07:56:36Z","file_id":"19052"}],"page":"10165-10168","year":"2024","doi":"10.1093/imrn/rnae066","external_id":{"isi":["001196957300001"]},"article_processing_charge":"Yes (via OA deal)","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"title":"The polynomial sieve and equal sums of like polynomials","department":[{"_id":"TiBr"}],"article_type":"original"},{"day":"01","acknowledged_ssus":[{"_id":"ScienComp"}],"date_created":"2025-02-20T10:13:42Z","date_updated":"2025-02-24T12:52:23Z","status":"public","ddc":["000"],"has_accepted_license":"1","month":"03","file_date_updated":"2025-02-20T10:11:45Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","corr_author":"1","file":[{"file_size":530972,"checksum":"35eb43968684b87be59144603ef10af0","creator":"ezverev","file_name":"2403.06833v3.pdf","access_level":"open_access","relation":"main_file","file_id":"19064","date_updated":"2025-02-20T10:11:45Z","date_created":"2025-02-20T10:11:45Z","success":1,"content_type":"application/pdf"}],"year":"2024","external_id":{"arxiv":["2403.06833"]},"doi":"10.48550/arXiv.2403.06833","tmp":{"name":"Creative Commons Attribution-ShareAlike 4.0 International Public License (CC BY-SA 4.0)","short":"CC BY-SA (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-sa/4.0/legalcode","image":"/images/cc_by_sa.png"},"article_processing_charge":"No","department":[{"_id":"GradSch"},{"_id":"ChLa"}],"title":"Can LLMs separate instructions from data? And what do we even mean by that?","arxiv":1,"license":"https://creativecommons.org/licenses/by-sa/4.0/","related_material":{"link":[{"url":" https://github.com/egozverev/Shold-It-Be-Executed-Or-Processed","relation":"software"}]},"article_number":"2403.06833","OA_type":"green","type":"preprint","language":[{"iso":"eng"}],"main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2403.06833"}],"_id":"19063","abstract":[{"text":"Instruction-tuned Large Language Models (LLMs) show impressive results in numerous practical applications, but they lack essential safety features that are common in other areas of computer science, particularly an explicit separation of instructions and data. This makes them vulnerable to manipulations such as indirect prompt injections and generally unsuitable for safety-critical tasks. Surprisingly, there is currently no established definition or benchmark to quantify this phenomenon. In this work, we close this gap by introducing a formal measure for instruction-data separation and an empirical variant that is calculable from a model's outputs. We also present a new dataset, SEP, that allows estimating the measure for real-world models. Our results on various LLMs show that the problem of instruction-data separation is real: all models fail to achieve high separation, and canonical mitigation techniques, such as prompt engineering and fine-tuning, either fail to substantially improve separation or reduce model utility. The source code and SEP dataset are openly accessible at https://github.com/egozverev/Shold-It-Be-Executed-Or-Processed.\r\n","lang":"eng"}],"OA_place":"repository","author":[{"last_name":"Zverev","full_name":"Zverev, Egor","id":"05162b19-1340-11ed-8f02-fa94e0e8c3bc","first_name":"Egor"},{"last_name":"Abdelnabi","first_name":"Sahar","full_name":"Abdelnabi, Sahar"},{"last_name":"Tabesh","orcid":"0009-0003-4119-6281","first_name":"Soroush","full_name":"Tabesh, Soroush","id":"06000900-6068-11ef-8d61-c2472ef2e752"},{"last_name":"Fritz","first_name":"Mario","full_name":"Fritz, Mario"},{"first_name":"Christoph","id":"40C20FD2-F248-11E8-B48F-1D18A9856A87","full_name":"Lampert, Christoph","last_name":"Lampert","orcid":"0000-0001-8622-7887"}],"publication":"arXiv","oa":1,"date_published":"2024-03-01T00:00:00Z","oa_version":"Preprint","publication_status":"published","citation":{"ista":"Zverev E, Abdelnabi S, Tabesh S, Fritz M, Lampert C. 2024. Can LLMs separate instructions from data? And what do we even mean by that? arXiv, 2403.06833.","ieee":"E. Zverev, S. Abdelnabi, S. Tabesh, M. Fritz, and C. Lampert, “Can LLMs separate instructions from data? And what do we even mean by that?,” <i>arXiv</i>. 2024.","mla":"Zverev, Egor, et al. “Can LLMs Separate Instructions from Data? And What Do We Even Mean by That?” <i>ArXiv</i>, 2403.06833, 2024, doi:<a href=\"https://doi.org/10.48550/arXiv.2403.06833\">10.48550/arXiv.2403.06833</a>.","apa":"Zverev, E., Abdelnabi, S., Tabesh, S., Fritz, M., &#38; Lampert, C. (2024). Can LLMs separate instructions from data? And what do we even mean by that? <i>arXiv</i>. <a href=\"https://doi.org/10.48550/arXiv.2403.06833\">https://doi.org/10.48550/arXiv.2403.06833</a>","chicago":"Zverev, Egor, Sahar Abdelnabi, Soroush Tabesh, Mario Fritz, and Christoph Lampert. “Can LLMs Separate Instructions from Data? And What Do We Even Mean by That?” <i>ArXiv</i>, 2024. <a href=\"https://doi.org/10.48550/arXiv.2403.06833\">https://doi.org/10.48550/arXiv.2403.06833</a>.","short":"E. Zverev, S. Abdelnabi, S. Tabesh, M. Fritz, C. Lampert, ArXiv (2024).","ama":"Zverev E, Abdelnabi S, Tabesh S, Fritz M, Lampert C. Can LLMs separate instructions from data? And what do we even mean by that? <i>arXiv</i>. 2024. doi:<a href=\"https://doi.org/10.48550/arXiv.2403.06833\">10.48550/arXiv.2403.06833</a>"},"acknowledgement":"The authors would like to sincerely thank Juan Rocamonde for valuable feedback to our manuscript. We acknowledge the support from the Scientific Service Units (SSU) of ISTA through resources provided by Scientific Computing (SciComp). We thank Dan Alistarh for providing us with computational resources. This work was partially funded by the German Federal Ministry of Education and Research (BMBF) under the grant AIgenCY (16KIS2012) and ELSA – European Lighthouse on Secure and Safe AI funded by the European Union under grant agreement No. 101070617. Views and opinions expressed are however those of the authors only and do not necessarily reflect those of the European Union or European Commission. Neither the European Union nor the European Commission can be held responsible for them."},{"intvolume":"        33","isi":1,"status":"public","day":"01","date_updated":"2025-01-09T07:53:18Z","date_created":"2023-10-29T23:01:17Z","ddc":["570"],"publisher":"Wiley","file_date_updated":"2025-01-09T07:52:12Z","month":"12","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file":[{"success":1,"content_type":"application/pdf","file_id":"18785","date_created":"2025-01-09T07:52:12Z","date_updated":"2025-01-09T07:52:12Z","access_level":"open_access","file_name":"2024_MolecularEcology_Reeve.pdf","relation":"main_file","checksum":"686576036663f489c2d079df3079d126","creator":"dernst","file_size":6228700}],"scopus_import":"1","has_accepted_license":"1","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"article_processing_charge":"Yes (in subscription journal)","department":[{"_id":"NiBa"}],"title":"Chromosomal inversion polymorphisms are widespread across the species ranges of rough periwinkles (Littorina saxatilis and L. arcana)","article_type":"original","year":"2024","external_id":{"isi":["001085119000001"],"pmid":["37843465"]},"doi":"10.1111/mec.17160","_id":"14463","article_number":"e17160","publication_identifier":{"eissn":["1365-294X"],"issn":["0962-1083"]},"issue":"24","volume":33,"OA_type":"hybrid","pmid":1,"language":[{"iso":"eng"}],"type":"journal_article","author":[{"full_name":"Reeve, James","first_name":"James","last_name":"Reeve"},{"last_name":"Butlin","first_name":"Roger K.","full_name":"Butlin, Roger K."},{"full_name":"Koch, Eva L.","first_name":"Eva L.","last_name":"Koch"},{"last_name":"Stankowski","id":"43161670-5719-11EA-8025-FABC3DDC885E","full_name":"Stankowski, Sean","first_name":"Sean"},{"first_name":"Rui","full_name":"Faria, Rui","last_name":"Faria"}],"publication":"Molecular Ecology","date_published":"2024-12-01T00:00:00Z","oa":1,"OA_place":"publisher","abstract":[{"text":"Inversions are thought to play a key role in adaptation and speciation, suppressing recombination between diverging populations. Genes influencing adaptive traits cluster in inversions, and changes in inversion frequencies are associated with environmental differences. However, in many organisms, it is unclear if inversions are geographically and taxonomically widespread. The intertidal snail, Littorina saxatilis, is one such example. Strong associations between putative polymorphic inversions and phenotypic differences have been demonstrated between two ecotypes of L. saxatilis in Sweden and inferred elsewhere, but no direct evidence for inversion polymorphism currently exists across the species range. Using whole genome data from 107 snails, most inversion polymorphisms were found to be widespread across the species range. The frequencies of some inversion arrangements were significantly different among ecotypes, suggesting a parallel adaptive role. Many inversions were also polymorphic in the sister species, L. arcana, hinting at an ancient origin.","lang":"eng"}],"citation":{"mla":"Reeve, James, et al. “Chromosomal Inversion Polymorphisms Are Widespread across the Species Ranges of Rough Periwinkles (Littorina Saxatilis and L. Arcana).” <i>Molecular Ecology</i>, vol. 33, no. 24, e17160, Wiley, 2024, doi:<a href=\"https://doi.org/10.1111/mec.17160\">10.1111/mec.17160</a>.","ieee":"J. Reeve, R. K. Butlin, E. L. Koch, S. Stankowski, and R. Faria, “Chromosomal inversion polymorphisms are widespread across the species ranges of rough periwinkles (Littorina saxatilis and L. arcana),” <i>Molecular Ecology</i>, vol. 33, no. 24. Wiley, 2024.","ista":"Reeve J, Butlin RK, Koch EL, Stankowski S, Faria R. 2024. Chromosomal inversion polymorphisms are widespread across the species ranges of rough periwinkles (Littorina saxatilis and L. arcana). Molecular Ecology. 33(24), e17160.","chicago":"Reeve, James, Roger K. Butlin, Eva L. Koch, Sean Stankowski, and Rui Faria. “Chromosomal Inversion Polymorphisms Are Widespread across the Species Ranges of Rough Periwinkles (Littorina Saxatilis and L. Arcana).” <i>Molecular Ecology</i>. Wiley, 2024. <a href=\"https://doi.org/10.1111/mec.17160\">https://doi.org/10.1111/mec.17160</a>.","short":"J. Reeve, R.K. Butlin, E.L. Koch, S. Stankowski, R. Faria, Molecular Ecology 33 (2024).","ama":"Reeve J, Butlin RK, Koch EL, Stankowski S, Faria R. Chromosomal inversion polymorphisms are widespread across the species ranges of rough periwinkles (Littorina saxatilis and L. arcana). <i>Molecular Ecology</i>. 2024;33(24). doi:<a href=\"https://doi.org/10.1111/mec.17160\">10.1111/mec.17160</a>","apa":"Reeve, J., Butlin, R. K., Koch, E. L., Stankowski, S., &#38; Faria, R. (2024). Chromosomal inversion polymorphisms are widespread across the species ranges of rough periwinkles (Littorina saxatilis and L. arcana). <i>Molecular Ecology</i>. Wiley. <a href=\"https://doi.org/10.1111/mec.17160\">https://doi.org/10.1111/mec.17160</a>"},"publication_status":"published","acknowledgement":"We would like to thank members of the Littorina team for their advice and feedback during this project. In particular, we thank Alan Le Moan, who inspired us to look at heterozygosity differences to identify inversions, and Katherine Hearn for helping with the PCA scripts. We thank Edinburgh Genomics for library preparation and sequencing. Sample collections, sequencing and data preparation were supported by the European Research Council (ERC-2015-AdG-693030- BARRIERS) and the Natural Environment Research Council (NE/P001610/1). The analysis was supported by the Swedish Research Council (vetenskaprådet; 2018-03695_VR) and the Portuguese Foundation for Science and Technology (Fundación para a Ciência e Tecnologia) through a research project (PTDC/BIA-EVL/1614/2021) and CEEC contract (2020.00275.CEECIND).","quality_controlled":"1","oa_version":"Published Version"},{"abstract":[{"text":"Entire chromosomes are typically only transmitted vertically from one generation to the next. The horizontal transfer of such chromosomes has long been considered improbable, yet gained recent support in several pathogenic fungi where it may affect the fitness or host specificity. To date, it is unknown how these transfers occur, how common they are and whether they can occur between different species. In this study, we show multiple independent instances of horizontal transfers of the same accessory chromosome between two distinct strains of the asexual entomopathogenic fungus<jats:italic>Metarhizium robertsii</jats:italic>during experimental co-infection of its insect host, the Argentine ant. Notably, only the one chromosome – but no other – was transferred from the donor to the recipient strain. The recipient strain, now harboring the accessory chromosome, exhibited a competitive advantage under certain host conditions. By phylogenetic analysis we further demonstrate that the same accessory chromosome was horizontally transferred in a natural environment between<jats:italic>M. robertsii</jats:italic>and another congeneric insect pathogen,<jats:italic>M. guizhouense</jats:italic>. Hence horizontal chromosome transfer is not limited to the observed frequent events within species during experimental infections but also occurs naturally across species. The transferred accessory chromosome contains genes that might be involved in its preferential horizontal transfer, encoding putative histones and histone-modifying enzymes, but also putative virulence factors that may support its establishment. Our study reveals that both intra- and interspecies horizontal transfer of entire chromosomes is more frequent than previously assumed, likely representing a not uncommon mechanism for gene exchange.</jats:p><jats:sec><jats:title>Significance Statement</jats:title><jats:p>The enormous success of bacterial pathogens has been attributed to their ability to exchange genetic material between one another. Similarly, in eukaryotes, horizontal transfer of genetic material allowed the spread of virulence factors across species. The horizontal transfer of whole chromosomes could be an important pathway for such exchange of genetic material, but little is known about the origin of transferable chromosomes and how frequently they are exchanged. Here, we show that the transfer of accessory chromosomes - chromosomes that are non-essential but may provide fitness benefits - is common during fungal co-infections and is even possible between distant pathogenic species, highlighting the importance of horizontal gene transfer via chromosome transfer also for the evolution and function of eukaryotic pathogens.","lang":"eng"}],"OA_place":"publisher","APC_amount":"3040,36 EUR","date_published":"2024-03-12T00:00:00Z","oa":1,"publication":"Proceedings of the National Academy of Sciences of the United States of America","author":[{"full_name":"Habig, Michael","first_name":"Michael","last_name":"Habig"},{"last_name":"Grasse","first_name":"Anna V","full_name":"Grasse, Anna V","id":"406F989C-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Judith","full_name":"Müller, Judith","last_name":"Müller"},{"first_name":"Eva H.","full_name":"Stukenbrock, Eva H.","last_name":"Stukenbrock"},{"last_name":"Leitner","first_name":"Hanna","full_name":"Leitner, Hanna","id":"8fc5c6f6-5903-11ec-abad-c83f046253e7"},{"full_name":"Cremer, Sylvia","id":"2F64EC8C-F248-11E8-B48F-1D18A9856A87","first_name":"Sylvia","orcid":"0000-0002-2193-3868","last_name":"Cremer"}],"oa_version":"Published Version","acknowledgement":"We thank Bernhardt Steinwender, Jorgen Eilenberg, and Nicolai V. Meyling for the fungal strains. We further thank Chengshu Wang for providing the short sequencing reads for M. guizhouense ARESF977 he used for his published genome assembly, and Kristian Ullrich for help in the bioinformatics analysis for methylation pattern in Nanopore reads, and the VBC and the Max Planck Society for the use of their sequencing centers. We thank Barbara Milutinović and Hinrich Schulenburg for discussion, and Tal Dagan and Jens Rolff for comments on a previous version of the manuscript. Fig. 1A was created with BioRender.com. This study received funding by the European Research Council under the European Union’s Horizon 2020 Research and Innovation Programme (No. 771402; EPIDEMICSonCHIP) to S.C. and by the German Research Foundation (DFG grant HA9263/1-1) to M.H.","quality_controlled":"1","citation":{"apa":"Habig, M., Grasse, A. V., Müller, J., Stukenbrock, E. H., Leitner, H., &#38; Cremer, S. (2024). Frequent horizontal chromosome transfer between asexual fungal insect pathogens. <i>Proceedings of the National Academy of Sciences of the United States of America</i>. National Academy of Sciences. <a href=\"https://doi.org/10.1073/pnas.2316284121\">https://doi.org/10.1073/pnas.2316284121</a>","short":"M. Habig, A.V. Grasse, J. Müller, E.H. Stukenbrock, H. Leitner, S. Cremer, Proceedings of the National Academy of Sciences of the United States of America 121 (2024).","chicago":"Habig, Michael, Anna V Grasse, Judith Müller, Eva H. Stukenbrock, Hanna Leitner, and Sylvia Cremer. “Frequent Horizontal Chromosome Transfer between Asexual Fungal Insect Pathogens.” <i>Proceedings of the National Academy of Sciences of the United States of America</i>. National Academy of Sciences, 2024. <a href=\"https://doi.org/10.1073/pnas.2316284121\">https://doi.org/10.1073/pnas.2316284121</a>.","ama":"Habig M, Grasse AV, Müller J, Stukenbrock EH, Leitner H, Cremer S. Frequent horizontal chromosome transfer between asexual fungal insect pathogens. <i>Proceedings of the National Academy of Sciences of the United States of America</i>. 2024;121(11). doi:<a href=\"https://doi.org/10.1073/pnas.2316284121\">10.1073/pnas.2316284121</a>","ista":"Habig M, Grasse AV, Müller J, Stukenbrock EH, Leitner H, Cremer S. 2024. Frequent horizontal chromosome transfer between asexual fungal insect pathogens. Proceedings of the National Academy of Sciences of the United States of America. 121(11), e2316284121.","ieee":"M. Habig, A. V. Grasse, J. Müller, E. H. Stukenbrock, H. Leitner, and S. Cremer, “Frequent horizontal chromosome transfer between asexual fungal insect pathogens,” <i>Proceedings of the National Academy of Sciences of the United States of America</i>, vol. 121, no. 11. National Academy of Sciences, 2024.","mla":"Habig, Michael, et al. “Frequent Horizontal Chromosome Transfer between Asexual Fungal Insect Pathogens.” <i>Proceedings of the National Academy of Sciences of the United States of America</i>, vol. 121, no. 11, e2316284121, National Academy of Sciences, 2024, doi:<a href=\"https://doi.org/10.1073/pnas.2316284121\">10.1073/pnas.2316284121</a>."},"publication_status":"published","license":"https://creativecommons.org/licenses/by-nc-nd/4.0/","type":"journal_article","language":[{"iso":"eng"}],"pmid":1,"OA_type":"hybrid","volume":121,"publication_identifier":{"issn":["0027-8424"],"eissn":["1091-6490"]},"issue":"11","article_number":"e2316284121","_id":"14478","has_accepted_license":"1","scopus_import":"1","file":[{"relation":"main_file","access_level":"open_access","file_name":"2024_PNAS_Habig.pdf","date_updated":"2024-03-19T09:02:57Z","date_created":"2024-03-19T09:02:57Z","file_id":"15124","content_type":"application/pdf","success":1,"file_size":5750361,"creator":"dernst","checksum":"f5e871db617b682edc71fcd08670dc81"}],"corr_author":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file_date_updated":"2024-03-19T09:02:57Z","month":"03","external_id":{"isi":["001207630200005"],"pmid":["38442176"]},"doi":"10.1073/pnas.2316284121","year":"2024","title":"Frequent horizontal chromosome transfer between asexual fungal insect pathogens","article_type":"original","department":[{"_id":"SyCr"}],"tmp":{"short":"CC BY-NC-ND (4.0)","image":"/images/cc_by_nc_nd.png","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)"},"article_processing_charge":"Yes (in subscription journal)","date_updated":"2025-08-05T13:30:51Z","date_created":"2023-10-31T13:30:00Z","day":"12","isi":1,"status":"public","project":[{"grant_number":"771402","name":"Epidemics in ant societies on a chip","call_identifier":"H2020","_id":"2649B4DE-B435-11E9-9278-68D0E5697425"}],"intvolume":"       121","ec_funded":1,"publisher":"National Academy of Sciences","ddc":["570"]},{"acknowledgement":"We are sincerely grateful to the referees for their valuable comments and suggestions, which helped us to improve the paper. We are thankful to Jorgen Eilenberg and Nicolai V. Meyling for the fungal strain, to Simon Tragust, Abel Bernadou, and Brian Lazarro for insightful discussions, to Iago Sanmartín-Villar, Léa Briard, Céline Maitrel, and Nolwenn Rissen for their help with the experiments. Furthermore, we thank Anna V. Grasse for help with the immune gene expression analyses. We thank Sergio Ibarra for creating the graphical abstract. E.C. was supported by a Fyssen Foundation grant and the Alexander von Humboldt Foundation. A.D. was supported by the CNRS.","quality_controlled":"1","publication_status":"published","citation":{"ama":"Csata E, Perez-Escudero A, Laury E, et al. Fungal infection alters collective nutritional intake of ant colonies. <i>Current Biology</i>. 2024;34(4):902-909.e6. doi:<a href=\"https://doi.org/10.1016/j.cub.2024.01.017\">10.1016/j.cub.2024.01.017</a>","short":"E. Csata, A. Perez-Escudero, E. Laury, H. Leitner, G. Latil, J. Heinze, S. Simpson, S. Cremer, A. Dussutour, Current Biology 34 (2024) 902–909.e6.","chicago":"Csata, Eniko, Alfonso Perez-Escudero, Emmanuel Laury, Hanna Leitner, Gerard Latil, Juerge Heinze, Stephen Simpson, Sylvia Cremer, and Audrey Dussutour. “Fungal Infection Alters Collective Nutritional Intake of Ant Colonies.” <i>Current Biology</i>. Elsevier, 2024. <a href=\"https://doi.org/10.1016/j.cub.2024.01.017\">https://doi.org/10.1016/j.cub.2024.01.017</a>.","apa":"Csata, E., Perez-Escudero, A., Laury, E., Leitner, H., Latil, G., Heinze, J., … Dussutour, A. (2024). Fungal infection alters collective nutritional intake of ant colonies. <i>Current Biology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.cub.2024.01.017\">https://doi.org/10.1016/j.cub.2024.01.017</a>","ieee":"E. Csata <i>et al.</i>, “Fungal infection alters collective nutritional intake of ant colonies,” <i>Current Biology</i>, vol. 34, no. 4. Elsevier, p. 902–909.e6, 2024.","mla":"Csata, Eniko, et al. “Fungal Infection Alters Collective Nutritional Intake of Ant Colonies.” <i>Current Biology</i>, vol. 34, no. 4, Elsevier, 2024, p. 902–909.e6, doi:<a href=\"https://doi.org/10.1016/j.cub.2024.01.017\">10.1016/j.cub.2024.01.017</a>.","ista":"Csata E, Perez-Escudero A, Laury E, Leitner H, Latil G, Heinze J, Simpson S, Cremer S, Dussutour A. 2024. Fungal infection alters collective nutritional intake of ant colonies. Current Biology. 34(4), 902–909.e6."},"oa_version":"Preprint","oa":1,"date_published":"2024-02-26T00:00:00Z","author":[{"first_name":"Eniko","full_name":"Csata, Eniko","last_name":"Csata"},{"full_name":"Perez-Escudero, Alfonso","first_name":"Alfonso","last_name":"Perez-Escudero"},{"last_name":"Laury","first_name":"Emmanuel","full_name":"Laury, Emmanuel"},{"id":"8fc5c6f6-5903-11ec-abad-c83f046253e7","full_name":"Leitner, Hanna","first_name":"Hanna","last_name":"Leitner"},{"last_name":"Latil","full_name":"Latil, Gerard","first_name":"Gerard"},{"last_name":"Heinze","full_name":"Heinze, Juerge","first_name":"Juerge"},{"last_name":"Simpson","full_name":"Simpson, Stephen","first_name":"Stephen"},{"full_name":"Cremer, Sylvia","id":"2F64EC8C-F248-11E8-B48F-1D18A9856A87","first_name":"Sylvia","orcid":"0000-0002-2193-3868","last_name":"Cremer"},{"first_name":"Audrey","full_name":"Dussutour, Audrey","last_name":"Dussutour"}],"publication":"Current Biology","abstract":[{"lang":"eng","text":"In animals, parasitic infections impose significant fitness costs.1,2,3,4,5,6 Infected animals can alter their feeding behavior to resist infection,7,8,9,10,11,12 but parasites can manipulate animal foraging behavior to their own benefits.13,14,15,16 How nutrition influences host-parasite interactions is not well understood, as studies have mainly focused on the host and less on the parasite.9,12,17,18,19,20,21,22,23 We used the nutritional geometry framework24 to investigate the role of amino acids (AA) and carbohydrates (C) in a host-parasite system: the Argentine ant, Linepithema humile, and the entomopathogenic fungus, Metarhizium brunneum. First, using 18 diets varying in AA:C composition, we established that the fungus performed best on the high-amino-acid diet 1:4. Second, we found that the fungus reached this optimal diet when given various diet pairings, revealing its ability to cope with nutritional challenges. Third, we showed that the optimal fungal diet reduced the lifespan of healthy ants when compared with a high-carbohydrate diet but had no effect on infected ants. Fourth, we revealed that infected ant colonies, given a choice between the optimal fungal diet and a high-carbohydrate diet, chose the optimal fungal diet, whereas healthy colonies avoided it. Lastly, by disentangling fungal infection from host immune response, we demonstrated that infected ants foraged on the optimal fungal diet in response to immune activation and not as a result of parasite manipulation. Therefore, we revealed that infected ant colonies chose a diet that is costly for survival in the long term but beneficial in the short term—a form of collective self-medication."}],"_id":"14479","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1101/2023.10.26.564092"}],"pmid":1,"language":[{"iso":"eng"}],"type":"journal_article","issue":"4","publication_identifier":{"issn":["0960-9822"],"eissn":["1879-0445"]},"volume":34,"department":[{"_id":"SyCr"}],"title":"Fungal infection alters collective nutritional intake of ant colonies","article_type":"original","article_processing_charge":"No","external_id":{"isi":["001195884300001"],"pmid":["38307022"]},"doi":"10.1016/j.cub.2024.01.017","page":"902-909.e6","year":"2024","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"02","scopus_import":"1","publisher":"Elsevier","status":"public","isi":1,"intvolume":"        34","date_created":"2023-10-31T13:30:20Z","date_updated":"2025-08-05T13:29:38Z","day":"26"},{"_id":"14488","volume":132,"publication_identifier":{"issn":["0920-5691"],"eissn":["1573-1405"]},"type":"journal_article","language":[{"iso":"eng"}],"pmid":1,"citation":{"ista":"Rao P, Mallikarjun BR, Fox G, Weyrich T, Bickel B, Pfister H, Matusik W, Zhan F, Tewari A, Theobalt C, Elgharib M. 2024. A deeper analysis of volumetric relightiable faces. International Journal of Computer Vision. 132, 1148–1166.","mla":"Rao, Pramod, et al. “A Deeper Analysis of Volumetric Relightiable Faces.” <i>International Journal of Computer Vision</i>, vol. 132, Springer Nature, 2024, pp. 1148–66, doi:<a href=\"https://doi.org/10.1007/s11263-023-01899-3\">10.1007/s11263-023-01899-3</a>.","ieee":"P. Rao <i>et al.</i>, “A deeper analysis of volumetric relightiable faces,” <i>International Journal of Computer Vision</i>, vol. 132. Springer Nature, pp. 1148–1166, 2024.","apa":"Rao, P., Mallikarjun, B. R., Fox, G., Weyrich, T., Bickel, B., Pfister, H., … Elgharib, M. (2024). A deeper analysis of volumetric relightiable faces. <i>International Journal of Computer Vision</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s11263-023-01899-3\">https://doi.org/10.1007/s11263-023-01899-3</a>","ama":"Rao P, Mallikarjun BR, Fox G, et al. A deeper analysis of volumetric relightiable faces. <i>International Journal of Computer Vision</i>. 2024;132:1148-1166. doi:<a href=\"https://doi.org/10.1007/s11263-023-01899-3\">10.1007/s11263-023-01899-3</a>","short":"P. Rao, B.R. Mallikarjun, G. Fox, T. Weyrich, B. Bickel, H. Pfister, W. Matusik, F. Zhan, A. Tewari, C. Theobalt, M. Elgharib, International Journal of Computer Vision 132 (2024) 1148–1166.","chicago":"Rao, Pramod, B. R. Mallikarjun, Gereon Fox, Tim Weyrich, Bernd Bickel, Hanspeter Pfister, Wojciech Matusik, et al. “A Deeper Analysis of Volumetric Relightiable Faces.” <i>International Journal of Computer Vision</i>. Springer Nature, 2024. <a href=\"https://doi.org/10.1007/s11263-023-01899-3\">https://doi.org/10.1007/s11263-023-01899-3</a>."},"publication_status":"published","acknowledgement":"Open Access funding enabled and organized by Projekt DEAL.","quality_controlled":"1","oa_version":"Published Version","publication":"International Journal of Computer Vision","author":[{"last_name":"Rao","first_name":"Pramod","full_name":"Rao, Pramod"},{"last_name":"Mallikarjun","full_name":"Mallikarjun, B. R.","first_name":"B. R."},{"last_name":"Fox","first_name":"Gereon","full_name":"Fox, Gereon"},{"first_name":"Tim","full_name":"Weyrich, Tim","last_name":"Weyrich"},{"orcid":"0000-0001-6511-9385","last_name":"Bickel","id":"49876194-F248-11E8-B48F-1D18A9856A87","full_name":"Bickel, Bernd","first_name":"Bernd"},{"last_name":"Pfister","full_name":"Pfister, Hanspeter","first_name":"Hanspeter"},{"full_name":"Matusik, Wojciech","first_name":"Wojciech","last_name":"Matusik"},{"full_name":"Zhan, Fangneng","first_name":"Fangneng","last_name":"Zhan"},{"last_name":"Tewari","first_name":"Ayush","full_name":"Tewari, Ayush"},{"full_name":"Theobalt, Christian","first_name":"Christian","last_name":"Theobalt"},{"last_name":"Elgharib","first_name":"Mohamed","full_name":"Elgharib, Mohamed"}],"oa":1,"date_published":"2024-04-01T00:00:00Z","abstract":[{"text":"Portrait viewpoint and illumination editing is an important problem with several applications in VR/AR, movies, and photography. Comprehensive knowledge of geometry and illumination is critical for obtaining photorealistic results. Current methods are unable to explicitly model in 3D while handling both viewpoint and illumination editing from a single image. In this paper, we propose VoRF, a novel approach that can take even a single portrait image as input and relight human heads under novel illuminations that can be viewed from arbitrary viewpoints. VoRF represents a human head as a continuous volumetric field and learns a prior model of human heads using a coordinate-based MLP with individual latent spaces for identity and illumination. The prior model is learned in an auto-decoder manner over a diverse class of head shapes and appearances, allowing VoRF to generalize to novel test identities from a single input image. Additionally, VoRF has a reflectance MLP that uses the intermediate features of the prior model for rendering One-Light-at-A-Time (OLAT) images under novel views. We synthesize novel illuminations by combining these OLAT images with target environment maps. Qualitative and quantitative evaluations demonstrate the effectiveness of VoRF for relighting and novel view synthesis, even when applied to unseen subjects under uncontrolled illumination. This work is an extension of Rao et al. (VoRF: Volumetric Relightable Faces 2022). We provide extensive evaluation and ablative studies of our model and also provide an application, where any face can be relighted using textual input.","lang":"eng"}],"publisher":"Springer Nature","ddc":["000"],"intvolume":"       132","status":"public","isi":1,"day":"01","date_updated":"2025-08-05T13:28:58Z","date_created":"2023-11-05T23:00:54Z","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"article_processing_charge":"Yes (via OA deal)","department":[{"_id":"BeBi"}],"title":"A deeper analysis of volumetric relightiable faces","article_type":"original","year":"2024","page":"1148-1166","external_id":{"isi":["001091935600002"],"pmid":["38549787"]},"doi":"10.1007/s11263-023-01899-3","file_date_updated":"2024-07-22T11:07:14Z","month":"04","file":[{"checksum":"5eef1d920f6fe700d7856098000d05f1","creator":"dernst","file_size":9942520,"file_name":"2024_IJCV_Rao.pdf","access_level":"open_access","relation":"main_file","success":1,"content_type":"application/pdf","file_id":"17304","date_created":"2024-07-22T11:07:14Z","date_updated":"2024-07-22T11:07:14Z"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","has_accepted_license":"1","scopus_import":"1"},{"ec_funded":1,"ddc":["510"],"publisher":"World Scientific Publishing","date_updated":"2026-04-07T13:01:40Z","date_created":"2023-11-15T23:48:14Z","day":"01","status":"public","isi":1,"intvolume":"        36","project":[{"call_identifier":"H2020","name":"Random matrices beyond Wigner-Dyson-Mehta","grant_number":"101020331","_id":"62796744-2b32-11ec-9570-940b20777f1d"},{"_id":"bda63fe5-d553-11ed-ba76-a16e3d2f256b","grant_number":"I06427","name":"Mathematical Challenges in BCS Theory of Superconductivity"}],"external_id":{"isi":["001099640300002"],"arxiv":["2301.05621"]},"doi":"10.1142/s0129055x2360005x","year":"2024","title":"Universality in low-dimensional BCS theory","department":[{"_id":"GradSch"},{"_id":"LaEr"},{"_id":"RoSe"}],"article_type":"original","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"article_processing_charge":"Yes (in subscription journal)","scopus_import":"1","has_accepted_license":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","corr_author":"1","file":[{"checksum":"2b053a4223b4db14b90520999ec56054","creator":"dernst","file_size":503910,"access_level":"open_access","file_name":"2024_ReviewsmathPhysics_Henheik.pdf","relation":"main_file","success":1,"content_type":"application/pdf","file_id":"18786","date_created":"2025-01-09T07:56:28Z","date_updated":"2025-01-09T07:56:28Z"}],"month":"10","file_date_updated":"2025-01-09T07:56:28Z","type":"journal_article","language":[{"iso":"eng"}],"issue":"9","article_number":"2360005 ","publication_identifier":{"issn":["0129-055X"],"eissn":["1793-6659"]},"OA_type":"hybrid","volume":36,"_id":"14542","arxiv":1,"related_material":{"record":[{"status":"public","relation":"dissertation_contains","id":"19540"},{"relation":"dissertation_contains","status":"public","id":"18135"}]},"oa_version":"Published Version","quality_controlled":"1","acknowledgement":"We thank Robert Seiringer for comments on the paper. J. H. gratefully acknowledges  partial  financial  support  by  the  ERC  Advanced  Grant  “RMTBeyond”No. 101020331.This research was funded in part by the Austrian Science Fund (FWF) grantnumber I6427.","citation":{"ista":"Henheik SJ, Lauritsen AB, Roos B. 2024. Universality in low-dimensional BCS theory. Reviews in Mathematical Physics. 36(9), 2360005.","ieee":"S. J. Henheik, A. B. Lauritsen, and B. Roos, “Universality in low-dimensional BCS theory,” <i>Reviews in Mathematical Physics</i>, vol. 36, no. 9. World Scientific Publishing, 2024.","mla":"Henheik, Sven Joscha, et al. “Universality in Low-Dimensional BCS Theory.” <i>Reviews in Mathematical Physics</i>, vol. 36, no. 9, 2360005, World Scientific Publishing, 2024, doi:<a href=\"https://doi.org/10.1142/s0129055x2360005x\">10.1142/s0129055x2360005x</a>.","apa":"Henheik, S. J., Lauritsen, A. B., &#38; Roos, B. (2024). Universality in low-dimensional BCS theory. <i>Reviews in Mathematical Physics</i>. World Scientific Publishing. <a href=\"https://doi.org/10.1142/s0129055x2360005x\">https://doi.org/10.1142/s0129055x2360005x</a>","chicago":"Henheik, Sven Joscha, Asbjørn Bækgaard Lauritsen, and Barbara Roos. “Universality in Low-Dimensional BCS Theory.” <i>Reviews in Mathematical Physics</i>. World Scientific Publishing, 2024. <a href=\"https://doi.org/10.1142/s0129055x2360005x\">https://doi.org/10.1142/s0129055x2360005x</a>.","ama":"Henheik SJ, Lauritsen AB, Roos B. Universality in low-dimensional BCS theory. <i>Reviews in Mathematical Physics</i>. 2024;36(9). doi:<a href=\"https://doi.org/10.1142/s0129055x2360005x\">10.1142/s0129055x2360005x</a>","short":"S.J. Henheik, A.B. Lauritsen, B. Roos, Reviews in Mathematical Physics 36 (2024)."},"publication_status":"published","OA_place":"publisher","abstract":[{"text":"It is a remarkable property of BCS theory that the ratio of the energy gap at zero temperature Ξ\r\n and the critical temperature Tc is (approximately) given by a universal constant, independent of the microscopic details of the fermionic interaction. This universality has rigorously been proven quite recently in three spatial dimensions and three different limiting regimes: weak coupling, low density and high density. The goal of this short note is to extend the universal behavior to lower dimensions d=1,2 and give an exemplary proof in the weak coupling limit.","lang":"eng"}],"date_published":"2024-10-01T00:00:00Z","oa":1,"author":[{"first_name":"Sven Joscha","full_name":"Henheik, Sven Joscha","id":"31d731d7-d235-11ea-ad11-b50331c8d7fb","last_name":"Henheik","orcid":"0000-0003-1106-327X"},{"orcid":"0000-0003-4476-2288","last_name":"Lauritsen","full_name":"Lauritsen, Asbjørn Bækgaard","id":"e1a2682f-dc8d-11ea-abe3-81da9ac728f1","first_name":"Asbjørn Bækgaard"},{"full_name":"Roos, Barbara","id":"5DA90512-D80F-11E9-8994-2E2EE6697425","first_name":"Barbara","orcid":"0000-0002-9071-5880","last_name":"Roos"}],"publication":"Reviews in Mathematical Physics"},{"abstract":[{"lang":"eng","text":"The acyl-CoA-binding domain-containing protein 6 (ACBD6) is ubiquitously expressed, plays a role in the acylation of lipids and proteins, and regulates the N-myristoylation of proteins via N-myristoyltransferase enzymes (NMTs). However, its precise function in cells is still unclear, as is the consequence of ACBD6 defects on human pathophysiology. Utilizing exome sequencing and extensive international data sharing efforts, we identified 45 affected individuals from 28 unrelated families (consanguinity 93%) with bi-allelic pathogenic, predominantly loss-of-function (18/20) variants in ACBD6. We generated zebrafish and Xenopus tropicalis acbd6 knockouts by CRISPR/Cas9 and characterized the role of ACBD6 on protein N-myristoylation with YnMyr chemical proteomics in the model organisms and human cells, with the latter also being subjected further to ACBD6 peroxisomal localization studies. The affected individuals (23 males and 22 females), with ages ranging from 1 to 50 years old, typically present with a complex and progressive disease involving moderate-to-severe global developmental delay/intellectual disability (100%) with significant expressive language impairment (98%), movement disorders (97%), facial dysmorphism (95%), and mild cerebellar ataxia (85%) associated with gait impairment (94%), limb spasticity/hypertonia (76%), oculomotor (71%) and behavioural abnormalities (65%), overweight (59%), microcephaly (39%) and epilepsy (33%). The most conspicuous and common movement disorder was dystonia (94%), frequently leading to early-onset progressive postural deformities (97%), limb dystonia (55%), and cervical dystonia (31%). A jerky tremor in the upper limbs (63%), a mild head tremor (59%), parkinsonism/hypokinesia developing with advancing age (32%), and simple motor and vocal tics were among other frequent movement disorders. Midline brain malformations including corpus callosum abnormalities (70%), hypoplasia/agenesis of the anterior commissure (66%), short midbrain and small inferior cerebellar vermis (38% each), as well as hypertrophy of the clava (24%) were common neuroimaging findings. acbd6-deficient zebrafish and Xenopus models effectively recapitulated many clinical phenotypes reported in patients including movement disorders, progressive neuromotor impairment, seizures, microcephaly, craniofacial dysmorphism, and midbrain defects accompanied by developmental delay with increased mortality over time. Unlike ACBD5, ACBD6 did not show a peroxisomal localisation and ACBD6-deficiency was not associated with altered peroxisomal parameters in patient fibroblasts. Significant differences in YnMyr-labelling were observed for 68 co- and 18 post-translationally N-myristoylated proteins in patient-derived fibroblasts. N-Myristoylation was similarly affected in acbd6-deficient zebrafish and Xenopus tropicalis models, including Fus, Marcks, and Chchd-related proteins implicated in neurological diseases. The present study provides evidence that bi-allelic pathogenic variants in ACBD6 lead to a distinct neurodevelopmental syndrome accompanied by complex and progressive cognitive and movement disorders."}],"publication":"Brain","author":[{"last_name":"Kaiyrzhanov","full_name":"Kaiyrzhanov, Rauan","first_name":"Rauan"},{"last_name":"Rad","full_name":"Rad, Aboulfazl","first_name":"Aboulfazl"},{"full_name":"Lin, Sheng-Jia","first_name":"Sheng-Jia","last_name":"Lin"},{"first_name":"Aida","full_name":"Bertoli-Avella, Aida","last_name":"Bertoli-Avella"},{"first_name":"Wouter W","full_name":"Kallemeijn, Wouter W","last_name":"Kallemeijn"},{"first_name":"Annie","full_name":"Godwin, Annie","last_name":"Godwin"},{"last_name":"Zaki","first_name":"Maha S","full_name":"Zaki, Maha S"},{"id":"3b3d2888-1ff6-11ee-9fa6-8f209ca91fe3","full_name":"Huang, Kevin","first_name":"Kevin","orcid":"0000-0002-2512-7812","last_name":"Huang"},{"full_name":"Lau, Tracy","first_name":"Tracy","last_name":"Lau"},{"last_name":"Petree","first_name":"Cassidy","full_name":"Petree, Cassidy"},{"first_name":"Stephanie","full_name":"Efthymiou, Stephanie","last_name":"Efthymiou"},{"first_name":"Ehsan","full_name":"Ghayoor Karimiani, Ehsan","last_name":"Ghayoor Karimiani"},{"last_name":"Hempel","first_name":"Maja","full_name":"Hempel, Maja"},{"last_name":"Normand","first_name":"Elizabeth A","full_name":"Normand, Elizabeth A"},{"last_name":"Rudnik-Schöneborn","first_name":"Sabine","full_name":"Rudnik-Schöneborn, Sabine"},{"last_name":"Schatz","full_name":"Schatz, Ulrich A","first_name":"Ulrich A"},{"full_name":"Baggelaar, Marc P","first_name":"Marc P","last_name":"Baggelaar"},{"first_name":"Muhammad","full_name":"Ilyas, Muhammad","last_name":"Ilyas"},{"last_name":"Sultan","first_name":"Tipu","full_name":"Sultan, Tipu"},{"first_name":"Javeria Raza","full_name":"Alvi, Javeria Raza","last_name":"Alvi"},{"full_name":"Ganieva, Manizha","first_name":"Manizha","last_name":"Ganieva"},{"last_name":"Fowler","first_name":"Ben","full_name":"Fowler, Ben"},{"full_name":"Aanicai, Ruxandra","first_name":"Ruxandra","last_name":"Aanicai"},{"full_name":"Akay Tayfun, Gulsen","first_name":"Gulsen","last_name":"Akay Tayfun"},{"last_name":"Al Saman","first_name":"Abdulaziz","full_name":"Al Saman, Abdulaziz"},{"last_name":"Alswaid","full_name":"Alswaid, Abdulrahman","first_name":"Abdulrahman"},{"last_name":"Amiri","full_name":"Amiri, Nafise","first_name":"Nafise"},{"last_name":"Asilova","full_name":"Asilova, Nilufar","first_name":"Nilufar"},{"full_name":"Shotelersuk, Vorasuk","first_name":"Vorasuk","last_name":"Shotelersuk"},{"last_name":"Yeetong","full_name":"Yeetong, Patra","first_name":"Patra"},{"first_name":"Matloob","full_name":"Azam, Matloob","last_name":"Azam"},{"last_name":"Babaei","first_name":"Meisam","full_name":"Babaei, Meisam"},{"full_name":"Bahrami Monajemi, Gholamreza","first_name":"Gholamreza","last_name":"Bahrami Monajemi"},{"last_name":"Mohammadi","full_name":"Mohammadi, Pouria","first_name":"Pouria"},{"first_name":"Saeed","full_name":"Samie, Saeed","last_name":"Samie"},{"first_name":"Selina Husna","full_name":"Banu, Selina Husna","last_name":"Banu"},{"last_name":"Basto","full_name":"Basto, Jorge Pinto","first_name":"Jorge Pinto"},{"first_name":"Fanny","full_name":"Kortüm, Fanny","last_name":"Kortüm"},{"last_name":"Bauer","first_name":"Mislen","full_name":"Bauer, Mislen"},{"full_name":"Bauer, Peter","first_name":"Peter","last_name":"Bauer"},{"last_name":"Beetz","first_name":"Christian","full_name":"Beetz, Christian"},{"last_name":"Garshasbi","full_name":"Garshasbi, Masoud","first_name":"Masoud"},{"full_name":"Hameed Issa, Awatif","first_name":"Awatif","last_name":"Hameed Issa"},{"full_name":"Eyaid, Wafaa","first_name":"Wafaa","last_name":"Eyaid"},{"full_name":"Ahmed, Hind","first_name":"Hind","last_name":"Ahmed"},{"last_name":"Hashemi","first_name":"Narges","full_name":"Hashemi, Narges"},{"full_name":"Hassanpour, Kazem","first_name":"Kazem","last_name":"Hassanpour"},{"full_name":"Herman, Isabella","first_name":"Isabella","last_name":"Herman"},{"first_name":"Sherozjon","full_name":"Ibrohimov, Sherozjon","last_name":"Ibrohimov"},{"last_name":"Abdul-Majeed","first_name":"Ban A","full_name":"Abdul-Majeed, Ban A"},{"last_name":"Imdad","full_name":"Imdad, Maria","first_name":"Maria"},{"full_name":"Isrofilov, Maksudjon","first_name":"Maksudjon","last_name":"Isrofilov"},{"full_name":"Kaiyal, Qassem","first_name":"Qassem","last_name":"Kaiyal"},{"first_name":"Suliman","full_name":"Khan, Suliman","last_name":"Khan"},{"first_name":"Brian","full_name":"Kirmse, Brian","last_name":"Kirmse"},{"last_name":"Koster","first_name":"Janet","full_name":"Koster, Janet"},{"first_name":"Charles Marques","full_name":"Lourenço, Charles Marques","last_name":"Lourenço"},{"last_name":"Mitani","full_name":"Mitani, Tadahiro","first_name":"Tadahiro"},{"full_name":"Moldovan, Oana","first_name":"Oana","last_name":"Moldovan"},{"last_name":"Murphy","first_name":"David","full_name":"Murphy, David"},{"last_name":"Najafi","full_name":"Najafi, Maryam","first_name":"Maryam"},{"full_name":"Pehlivan, Davut","first_name":"Davut","last_name":"Pehlivan"},{"full_name":"Rocha, Maria Eugenia","first_name":"Maria Eugenia","last_name":"Rocha"},{"last_name":"Salpietro","first_name":"Vincenzo","full_name":"Salpietro, Vincenzo"},{"last_name":"Schmidts","full_name":"Schmidts, Miriam","first_name":"Miriam"},{"last_name":"Shalata","full_name":"Shalata, Adel","first_name":"Adel"},{"first_name":"Mohammad","full_name":"Mahroum, Mohammad","last_name":"Mahroum"},{"last_name":"Talbeya","first_name":"Jawabreh Kassem","full_name":"Talbeya, Jawabreh Kassem"},{"first_name":"Robert W","full_name":"Taylor, Robert W","last_name":"Taylor"},{"last_name":"Vazquez","first_name":"Dayana","full_name":"Vazquez, Dayana"},{"first_name":"Annalisa","full_name":"Vetro, Annalisa","last_name":"Vetro"},{"last_name":"Waterham","full_name":"Waterham, Hans R","first_name":"Hans R"},{"last_name":"Zaman","full_name":"Zaman, Mashaya","first_name":"Mashaya"},{"last_name":"Schrader","full_name":"Schrader, Tina A","first_name":"Tina A"},{"last_name":"Chung","first_name":"Wendy K","full_name":"Chung, Wendy K"},{"last_name":"Guerrini","first_name":"Renzo","full_name":"Guerrini, Renzo"},{"full_name":"Lupski, James R","first_name":"James R","last_name":"Lupski"},{"last_name":"Gleeson","first_name":"Joseph","full_name":"Gleeson, Joseph"},{"last_name":"Suri","full_name":"Suri, Mohnish","first_name":"Mohnish"},{"last_name":"Jamshidi","first_name":"Yalda","full_name":"Jamshidi, Yalda"},{"first_name":"Kailash P","full_name":"Bhatia, Kailash P","last_name":"Bhatia"},{"full_name":"Vona, Barbara","first_name":"Barbara","last_name":"Vona"},{"last_name":"Schrader","full_name":"Schrader, Michael","first_name":"Michael"},{"last_name":"Severino","first_name":"Mariasavina","full_name":"Severino, Mariasavina"},{"last_name":"Guille","first_name":"Matthew","full_name":"Guille, Matthew"},{"last_name":"Tate","first_name":"Edward W","full_name":"Tate, Edward W"},{"last_name":"Varshney","full_name":"Varshney, Gaurav K","first_name":"Gaurav K"},{"first_name":"Henry","full_name":"Houlden, Henry","last_name":"Houlden"},{"last_name":"Maroofian","full_name":"Maroofian, Reza","first_name":"Reza"}],"date_published":"2024-04-01T00:00:00Z","oa":1,"oa_version":"Submitted Version","keyword":["Neurology (clinical)"],"citation":{"ama":"Kaiyrzhanov R, Rad A, Lin S-J, et al. Bi-allelic ACBD6 variants lead to a neurodevelopmental syndrome with progressive and complex movement disorders. <i>Brain</i>. 2024;147(4):1436-1456. doi:<a href=\"https://doi.org/10.1093/brain/awad380\">10.1093/brain/awad380</a>","short":"R. Kaiyrzhanov, A. Rad, S.-J. Lin, A. Bertoli-Avella, W.W. Kallemeijn, A. Godwin, M.S. Zaki, K. Huang, T. Lau, C. Petree, S. Efthymiou, E. Ghayoor Karimiani, M. Hempel, E.A. Normand, S. Rudnik-Schöneborn, U.A. Schatz, M.P. Baggelaar, M. Ilyas, T. Sultan, J.R. Alvi, M. Ganieva, B. Fowler, R. Aanicai, G. Akay Tayfun, A. Al Saman, A. Alswaid, N. Amiri, N. Asilova, V. Shotelersuk, P. Yeetong, M. Azam, M. Babaei, G. Bahrami Monajemi, P. Mohammadi, S. Samie, S.H. Banu, J.P. Basto, F. Kortüm, M. Bauer, P. Bauer, C. Beetz, M. Garshasbi, A. Hameed Issa, W. Eyaid, H. Ahmed, N. Hashemi, K. Hassanpour, I. Herman, S. Ibrohimov, B.A. Abdul-Majeed, M. Imdad, M. Isrofilov, Q. Kaiyal, S. Khan, B. Kirmse, J. Koster, C.M. Lourenço, T. Mitani, O. Moldovan, D. Murphy, M. Najafi, D. Pehlivan, M.E. Rocha, V. Salpietro, M. Schmidts, A. Shalata, M. Mahroum, J.K. Talbeya, R.W. Taylor, D. Vazquez, A. Vetro, H.R. Waterham, M. Zaman, T.A. Schrader, W.K. Chung, R. Guerrini, J.R. Lupski, J. Gleeson, M. Suri, Y. Jamshidi, K.P. Bhatia, B. Vona, M. Schrader, M. Severino, M. Guille, E.W. Tate, G.K. Varshney, H. Houlden, R. Maroofian, Brain 147 (2024) 1436–1456.","chicago":"Kaiyrzhanov, Rauan, Aboulfazl Rad, Sheng-Jia Lin, Aida Bertoli-Avella, Wouter W Kallemeijn, Annie Godwin, Maha S Zaki, et al. “Bi-Allelic ACBD6 Variants Lead to a Neurodevelopmental Syndrome with Progressive and Complex Movement Disorders.” <i>Brain</i>. Oxford University Press, 2024. <a href=\"https://doi.org/10.1093/brain/awad380\">https://doi.org/10.1093/brain/awad380</a>.","apa":"Kaiyrzhanov, R., Rad, A., Lin, S.-J., Bertoli-Avella, A., Kallemeijn, W. W., Godwin, A., … Maroofian, R. (2024). Bi-allelic ACBD6 variants lead to a neurodevelopmental syndrome with progressive and complex movement disorders. <i>Brain</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/brain/awad380\">https://doi.org/10.1093/brain/awad380</a>","ieee":"R. Kaiyrzhanov <i>et al.</i>, “Bi-allelic ACBD6 variants lead to a neurodevelopmental syndrome with progressive and complex movement disorders,” <i>Brain</i>, vol. 147, no. 4. Oxford University Press, pp. 1436–1456, 2024.","mla":"Kaiyrzhanov, Rauan, et al. “Bi-Allelic ACBD6 Variants Lead to a Neurodevelopmental Syndrome with Progressive and Complex Movement Disorders.” <i>Brain</i>, vol. 147, no. 4, Oxford University Press, 2024, pp. 1436–56, doi:<a href=\"https://doi.org/10.1093/brain/awad380\">10.1093/brain/awad380</a>.","ista":"Kaiyrzhanov R, Rad A, Lin S-J, Bertoli-Avella A, Kallemeijn WW, Godwin A, Zaki MS, Huang K, Lau T, Petree C, Efthymiou S, Ghayoor Karimiani E, Hempel M, Normand EA, Rudnik-Schöneborn S, Schatz UA, Baggelaar MP, Ilyas M, Sultan T, Alvi JR, Ganieva M, Fowler B, Aanicai R, Akay Tayfun G, Al Saman A, Alswaid A, Amiri N, Asilova N, Shotelersuk V, Yeetong P, Azam M, Babaei M, Bahrami Monajemi G, Mohammadi P, Samie S, Banu SH, Basto JP, Kortüm F, Bauer M, Bauer P, Beetz C, Garshasbi M, Hameed Issa A, Eyaid W, Ahmed H, Hashemi N, Hassanpour K, Herman I, Ibrohimov S, Abdul-Majeed BA, Imdad M, Isrofilov M, Kaiyal Q, Khan S, Kirmse B, Koster J, Lourenço CM, Mitani T, Moldovan O, Murphy D, Najafi M, Pehlivan D, Rocha ME, Salpietro V, Schmidts M, Shalata A, Mahroum M, Talbeya JK, Taylor RW, Vazquez D, Vetro A, Waterham HR, Zaman M, Schrader TA, Chung WK, Guerrini R, Lupski JR, Gleeson J, Suri M, Jamshidi Y, Bhatia KP, Vona B, Schrader M, Severino M, Guille M, Tate EW, Varshney GK, Houlden H, Maroofian R. 2024. Bi-allelic ACBD6 variants lead to a neurodevelopmental syndrome with progressive and complex movement disorders. Brain. 147(4), 1436–1456."},"publication_status":"published","quality_controlled":"1","extern":"1","volume":147,"publication_identifier":{"eissn":["1460-2156"],"issn":["0006-8950"]},"issue":"4","type":"journal_article","language":[{"iso":"eng"}],"pmid":1,"_id":"14543","has_accepted_license":"1","scopus_import":"1","file_date_updated":"2024-07-16T08:22:13Z","month":"04","file":[{"creator":"dernst","checksum":"0ee7a8ab9300225d60968f7a3e3cfa0d","file_size":2641456,"content_type":"application/pdf","success":1,"date_created":"2024-07-16T08:22:13Z","date_updated":"2024-07-16T08:22:13Z","file_id":"17254","relation":"main_file","access_level":"open_access","file_name":"2024_Brain_Kaiyrzhanov.pdf"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2024","page":"1436-1456","doi":"10.1093/brain/awad380","external_id":{"pmid":["37951597"]},"article_processing_charge":"No","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"title":"Bi-allelic ACBD6 variants lead to a neurodevelopmental syndrome with progressive and complex movement disorders","article_type":"original","department":[{"_id":"GradSch"}],"day":"01","date_created":"2023-11-16T12:36:51Z","date_updated":"2024-07-16T08:23:24Z","intvolume":"       147","status":"public","publisher":"Oxford University Press","ddc":["570"]},{"type":"journal_article","language":[{"iso":"eng"}],"volume":674,"issue":"2","article_number":"415539","publication_identifier":{"issn":["0921-4526"]},"_id":"14652","abstract":[{"text":"In order to demonstrate the stability of newly proposed iridium-based Ir2Cr(In,Sn) and IrRhCr(In,Sn) heusler alloys, we present ab-initio analysis of these alloys by examining various properties to prove their stability. The stability of these alloys can be inferred from different cohesive and formation energies as well as positive phonon frequencies. Their electronic structure results indicate that they are semi-metals in nature. The magnetic moments are computed using the Slater-Pauling formula and exhibit a high value, with the Cr atom contributing the most in all alloys. Mulliken’s charge analysis results show that our alloys contain a range of linkages, mainly ionic and covalent ones. The ductility and mechanical stability of these alloys are confirmed by elastic constants viz. Poisson’s ratio, Pugh’s ratio, and many different types of elastic moduli.","lang":"eng"}],"date_published":"2024-02-01T00:00:00Z","publication":"Physica B: Condensed Matter","author":[{"last_name":"Gupta","first_name":"Shyam Lal","full_name":"Gupta, Shyam Lal"},{"first_name":"Saurabh","id":"12d625da-9cb3-11ed-9667-af09d37d3f0a","full_name":"Singh, Saurabh","last_name":"Singh","orcid":"0000-0003-2209-5269"},{"full_name":"Kumar, Sumit","first_name":"Sumit","last_name":"Kumar"},{"last_name":"Anupam","first_name":"Unknown","full_name":"Anupam, Unknown"},{"last_name":"Thakur","first_name":"Samjeet Singh","full_name":"Thakur, Samjeet Singh"},{"full_name":"Kumar, Ashish","first_name":"Ashish","last_name":"Kumar"},{"first_name":"Sanjay","full_name":"Panwar, Sanjay","last_name":"Panwar"},{"full_name":"Diwaker, D.","first_name":"D.","last_name":"Diwaker"}],"oa_version":"None","quality_controlled":"1","citation":{"ista":"Gupta SL, Singh S, Kumar S, Anupam U, Thakur SS, Kumar A, Panwar S, Diwaker D. 2024. Ab-initio stability of Iridium based newly proposed full and quaternary heusler alloys. Physica B: Condensed Matter. 674(2), 415539.","mla":"Gupta, Shyam Lal, et al. “Ab-Initio Stability of Iridium Based Newly Proposed Full and Quaternary Heusler Alloys.” <i>Physica B: Condensed Matter</i>, vol. 674, no. 2, 415539, Elsevier, 2024, doi:<a href=\"https://doi.org/10.1016/j.physb.2023.415539\">10.1016/j.physb.2023.415539</a>.","ieee":"S. L. Gupta <i>et al.</i>, “Ab-initio stability of Iridium based newly proposed full and quaternary heusler alloys,” <i>Physica B: Condensed Matter</i>, vol. 674, no. 2. Elsevier, 2024.","apa":"Gupta, S. L., Singh, S., Kumar, S., Anupam, U., Thakur, S. S., Kumar, A., … Diwaker, D. (2024). Ab-initio stability of Iridium based newly proposed full and quaternary heusler alloys. <i>Physica B: Condensed Matter</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.physb.2023.415539\">https://doi.org/10.1016/j.physb.2023.415539</a>","chicago":"Gupta, Shyam Lal, Saurabh Singh, Sumit Kumar, Unknown Anupam, Samjeet Singh Thakur, Ashish Kumar, Sanjay Panwar, and D. Diwaker. “Ab-Initio Stability of Iridium Based Newly Proposed Full and Quaternary Heusler Alloys.” <i>Physica B: Condensed Matter</i>. Elsevier, 2024. <a href=\"https://doi.org/10.1016/j.physb.2023.415539\">https://doi.org/10.1016/j.physb.2023.415539</a>.","short":"S.L. Gupta, S. Singh, S. Kumar, U. Anupam, S.S. Thakur, A. Kumar, S. Panwar, D. Diwaker, Physica B: Condensed Matter 674 (2024).","ama":"Gupta SL, Singh S, Kumar S, et al. Ab-initio stability of Iridium based newly proposed full and quaternary heusler alloys. <i>Physica B: Condensed Matter</i>. 2024;674(2). doi:<a href=\"https://doi.org/10.1016/j.physb.2023.415539\">10.1016/j.physb.2023.415539</a>"},"publication_status":"published","date_updated":"2025-09-04T11:29:46Z","date_created":"2023-12-10T23:00:56Z","day":"01","status":"public","isi":1,"intvolume":"       674","publisher":"Elsevier","scopus_import":"1","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","month":"02","external_id":{"isi":["001127429000001"]},"doi":"10.1016/j.physb.2023.415539","year":"2024","title":"Ab-initio stability of Iridium based newly proposed full and quaternary heusler alloys","department":[{"_id":"MaIb"}],"article_type":"original","article_processing_charge":"No"},{"volume":495,"publication_identifier":{"issn":["1387-3806"]},"article_number":"117168","type":"journal_article","language":[{"iso":"eng"}],"_id":"14653","abstract":[{"lang":"eng","text":"Mass spectrometry imaging (MSI) is a powerful analytical technique for the two-dimensional (2D) localization of chemicals on surfaces. Conventional MSI experiments require to predefine the surface of interest based on photographic or microscopic images. Typically, these boundaries can no longer be changed or adjusted once the experiment has been started. In terms of a more interactive approach we recently developed a pen-like ionization interface which is directly connected to the mass spectrometer. The device allows the user to ionize chemicals by desorption electrospray ionization (DESI) and to freely move the interface over a surface of interest. A mini camera, which is mounted on the tip of the pen, magnifies the desorption area and enables a simple positioning of the pen. The combination of optical data from the camera module and chemical data obtained by mass analysis facilitates a novel type of imaging experiment: interactive mass spectrometry imaging (IMSI). For this application, we present a novel approach for a robust, optical flow-based motion detection. While the live video stream from the camera is used to track the pen's motion across the surface a post-acquisition algorithm correlates the coordinates of the pen trajectory with respective mass spectra obtained from a simultaneous mass spectrometric data acquisition. This algorithm is no longer dependent on a single, manually applied optical marker on the sample surface, which has to be visible on all video frames throughout the analysis. The advanced DESI-IMSI method was successfully tested on inkjet-printed letters as well as mouse brain tissue samples. Validation of the results was done by comparing DESI-IMSI with standard DESI-MSI data."}],"publication":"International Journal of Mass Spectrometry","author":[{"last_name":"Kluibenschedl","first_name":"Florian","full_name":"Kluibenschedl, Florian","id":"7499e70e-eb2c-11ec-b98b-f925648bc9d9"},{"full_name":"Ploner, Anna","first_name":"Anna","last_name":"Ploner"},{"first_name":"Christina","full_name":"Meisenbichler, Christina","last_name":"Meisenbichler"},{"last_name":"Konrat","full_name":"Konrat, Robert","first_name":"Robert"},{"first_name":"Thomas","full_name":"Müller, Thomas","last_name":"Müller"}],"oa":1,"date_published":"2024-01-01T00:00:00Z","oa_version":"Published Version","publication_status":"published","citation":{"ista":"Kluibenschedl F, Ploner A, Meisenbichler C, Konrat R, Müller T. 2024. Advanced motion tracking for interactive mass spectrometry imaging (IMSI). International Journal of Mass Spectrometry. 495, 117168.","mla":"Kluibenschedl, Florian, et al. “Advanced Motion Tracking for Interactive Mass Spectrometry Imaging (IMSI).” <i>International Journal of Mass Spectrometry</i>, vol. 495, 117168, Elsevier, 2024, doi:<a href=\"https://doi.org/10.1016/j.ijms.2023.117168\">10.1016/j.ijms.2023.117168</a>.","ieee":"F. Kluibenschedl, A. Ploner, C. Meisenbichler, R. Konrat, and T. Müller, “Advanced motion tracking for interactive mass spectrometry imaging (IMSI),” <i>International Journal of Mass Spectrometry</i>, vol. 495. Elsevier, 2024.","apa":"Kluibenschedl, F., Ploner, A., Meisenbichler, C., Konrat, R., &#38; Müller, T. (2024). Advanced motion tracking for interactive mass spectrometry imaging (IMSI). <i>International Journal of Mass Spectrometry</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.ijms.2023.117168\">https://doi.org/10.1016/j.ijms.2023.117168</a>","short":"F. Kluibenschedl, A. Ploner, C. Meisenbichler, R. Konrat, T. Müller, International Journal of Mass Spectrometry 495 (2024).","ama":"Kluibenschedl F, Ploner A, Meisenbichler C, Konrat R, Müller T. Advanced motion tracking for interactive mass spectrometry imaging (IMSI). <i>International Journal of Mass Spectrometry</i>. 2024;495. doi:<a href=\"https://doi.org/10.1016/j.ijms.2023.117168\">10.1016/j.ijms.2023.117168</a>","chicago":"Kluibenschedl, Florian, Anna Ploner, Christina Meisenbichler, Robert Konrat, and Thomas Müller. “Advanced Motion Tracking for Interactive Mass Spectrometry Imaging (IMSI).” <i>International Journal of Mass Spectrometry</i>. Elsevier, 2024. <a href=\"https://doi.org/10.1016/j.ijms.2023.117168\">https://doi.org/10.1016/j.ijms.2023.117168</a>."},"quality_controlled":"1","acknowledgement":"We would like to thank Marco Sealey Cardona, PhD for help with the mouse brain samples and acknowledge the financial support by 1669 Förderkreis of the University of Innsbruck, Austria Wirtschaftsservice (AWS), D. Swarovski KG and Tyrolean Science Fund (TWF).","day":"01","date_updated":"2025-09-04T11:30:59Z","date_created":"2023-12-10T23:00:57Z","intvolume":"       495","status":"public","isi":1,"publisher":"Elsevier","ddc":["540"],"has_accepted_license":"1","scopus_import":"1","month":"01","file_date_updated":"2024-07-16T08:27:34Z","file":[{"relation":"main_file","file_name":"2024_IJMS_Kluibenschedl.pdf","access_level":"open_access","content_type":"application/pdf","success":1,"date_created":"2024-07-16T08:27:34Z","date_updated":"2024-07-16T08:27:34Z","file_id":"17256","creator":"dernst","checksum":"6c5eb6dc07af70a59251d2c6fed38894","file_size":3003139}],"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","year":"2024","external_id":{"isi":["001125054400001"]},"doi":"10.1016/j.ijms.2023.117168","article_processing_charge":"Yes (in subscription journal)","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"title":"Advanced motion tracking for interactive mass spectrometry imaging (IMSI)","department":[{"_id":"GradSch"}],"article_type":"original"},{"arxiv":1,"publication_identifier":{"eissn":["1469-2120"],"issn":["0024-6093"]},"issue":"2","volume":56,"language":[{"iso":"eng"}],"type":"journal_article","_id":"14660","abstract":[{"text":"The classical Steinitz theorem states that if the origin belongs to the interior of the convex hull of a set 𝑆⊂ℝ𝑑, then there are at most 2𝑑 points of 𝑆 whose convex hull contains the origin in the interior. Bárány, Katchalski,and Pach proved the following quantitative version of Steinitz’s theorem. Let 𝑄 be a convex polytope in ℝ𝑑 containing the standard Euclidean unit ball 𝐁𝑑. Then there exist at most 2𝑑 vertices of 𝑄 whose convex hull 𝑄′ satisfies 𝑟𝐁𝑑⊂𝑄′ with 𝑟⩾𝑑−2𝑑. They conjectured that 𝑟⩾𝑐𝑑−1∕2 holds with a universal constant 𝑐>0. We prove 𝑟⩾15𝑑2, the first polynomial lower bound on 𝑟. Furthermore, we show that 𝑟 is not greater than 2/√𝑑.","lang":"eng"}],"author":[{"last_name":"Ivanov","first_name":"Grigory","full_name":"Ivanov, Grigory","id":"87744F66-5C6F-11EA-AFE0-D16B3DDC885E"},{"last_name":"Naszódi","full_name":"Naszódi, Márton","first_name":"Márton"}],"publication":"Bulletin of the London Mathematical Society","oa":1,"date_published":"2024-02-01T00:00:00Z","oa_version":"Published Version","citation":{"mla":"Ivanov, Grigory, and Márton Naszódi. “Quantitative Steinitz Theorem: A Polynomial Bound.” <i>Bulletin of the London Mathematical Society</i>, vol. 56, no. 2, London Mathematical Society, 2024, pp. 796–802, doi:<a href=\"https://doi.org/10.1112/blms.12965\">10.1112/blms.12965</a>.","ieee":"G. Ivanov and M. Naszódi, “Quantitative Steinitz theorem: A polynomial bound,” <i>Bulletin of the London Mathematical Society</i>, vol. 56, no. 2. London Mathematical Society, pp. 796–802, 2024.","ista":"Ivanov G, Naszódi M. 2024. Quantitative Steinitz theorem: A polynomial bound. Bulletin of the London Mathematical Society. 56(2), 796–802.","ama":"Ivanov G, Naszódi M. Quantitative Steinitz theorem: A polynomial bound. <i>Bulletin of the London Mathematical Society</i>. 2024;56(2):796-802. doi:<a href=\"https://doi.org/10.1112/blms.12965\">10.1112/blms.12965</a>","short":"G. Ivanov, M. Naszódi, Bulletin of the London Mathematical Society 56 (2024) 796–802.","chicago":"Ivanov, Grigory, and Márton Naszódi. “Quantitative Steinitz Theorem: A Polynomial Bound.” <i>Bulletin of the London Mathematical Society</i>. London Mathematical Society, 2024. <a href=\"https://doi.org/10.1112/blms.12965\">https://doi.org/10.1112/blms.12965</a>.","apa":"Ivanov, G., &#38; Naszódi, M. (2024). Quantitative Steinitz theorem: A polynomial bound. <i>Bulletin of the London Mathematical Society</i>. London Mathematical Society. <a href=\"https://doi.org/10.1112/blms.12965\">https://doi.org/10.1112/blms.12965</a>"},"publication_status":"published","acknowledgement":"M.N. was supported by the János Bolyai Scholarship of the Hungarian Academy of Sciences aswell as the National Research, Development and Innovation Fund (NRDI) grants K119670 andK131529, and the ÚNKP-22-5 New National Excellence Program of the Ministry for Innovationand Technology from the source of the NRDI as well as the ELTE TKP 2021-NKTA-62 fundingscheme","quality_controlled":"1","day":"01","date_created":"2023-12-10T23:00:58Z","date_updated":"2025-09-04T11:31:49Z","intvolume":"        56","status":"public","isi":1,"ddc":["510"],"publisher":"London Mathematical Society","scopus_import":"1","has_accepted_license":"1","file_date_updated":"2024-07-16T10:35:10Z","month":"02","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","corr_author":"1","file":[{"file_size":111756,"creator":"dernst","checksum":"30ea0694757bc668cf7cd15ae357b35e","relation":"main_file","file_name":"2024_BulletinLondonMathSoc_Ivanov.pdf","access_level":"open_access","date_created":"2024-07-16T10:35:10Z","date_updated":"2024-07-16T10:35:10Z","file_id":"17259","content_type":"application/pdf","success":1}],"page":"796-802","year":"2024","external_id":{"isi":["001113277100001"],"arxiv":["2212.04308"]},"doi":"10.1112/blms.12965","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"article_processing_charge":"Yes (via OA deal)","article_type":"original","title":"Quantitative Steinitz theorem: A polynomial bound","department":[{"_id":"UlWa"}]},{"article_type":"original","title":"Multiple packing: Lower bounds via error exponents","department":[{"_id":"MaMo"}],"article_processing_charge":"No","external_id":{"arxiv":["2211.04408"],"isi":["001166812100008"]},"doi":"10.1109/TIT.2023.3334032","page":"1008-1039","year":"2024","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","corr_author":"1","month":"02","scopus_import":"1","publisher":"IEEE","isi":1,"status":"public","intvolume":"        70","date_updated":"2025-09-04T11:32:49Z","date_created":"2023-12-10T23:01:00Z","day":"01","quality_controlled":"1","acknowledgement":"The work of Yihan Zhang was supported by the European Union’s Horizon 2020 Research and Innovation Programme under Grant 682203-ERC-[Inf-Speed-Tradeoff]. The work of Shashank Vatedka was supported in part by the Core Research Grant from the Science and\r\nEngineering Research Board, India, under Grant CRG/2022/004464; and in\r\npart by the Department of Science and Technology (DST), India, under Grant\r\nDST/INT/RUS/RSF/P-41/2020 (TPN No. 65025).","publication_status":"published","citation":{"mla":"Zhang, Yihan, and Shashank Vatedka. “Multiple Packing: Lower Bounds via Error Exponents.” <i>IEEE Transactions on Information Theory</i>, vol. 70, no. 2, IEEE, 2024, pp. 1008–39, doi:<a href=\"https://doi.org/10.1109/TIT.2023.3334032\">10.1109/TIT.2023.3334032</a>.","ieee":"Y. Zhang and S. Vatedka, “Multiple packing: Lower bounds via error exponents,” <i>IEEE Transactions on Information Theory</i>, vol. 70, no. 2. IEEE, pp. 1008–1039, 2024.","ista":"Zhang Y, Vatedka S. 2024. Multiple packing: Lower bounds via error exponents. IEEE Transactions on Information Theory. 70(2), 1008–1039.","short":"Y. Zhang, S. Vatedka, IEEE Transactions on Information Theory 70 (2024) 1008–1039.","chicago":"Zhang, Yihan, and Shashank Vatedka. “Multiple Packing: Lower Bounds via Error Exponents.” <i>IEEE Transactions on Information Theory</i>. IEEE, 2024. <a href=\"https://doi.org/10.1109/TIT.2023.3334032\">https://doi.org/10.1109/TIT.2023.3334032</a>.","ama":"Zhang Y, Vatedka S. Multiple packing: Lower bounds via error exponents. <i>IEEE Transactions on Information Theory</i>. 2024;70(2):1008-1039. doi:<a href=\"https://doi.org/10.1109/TIT.2023.3334032\">10.1109/TIT.2023.3334032</a>","apa":"Zhang, Y., &#38; Vatedka, S. (2024). Multiple packing: Lower bounds via error exponents. <i>IEEE Transactions on Information Theory</i>. IEEE. <a href=\"https://doi.org/10.1109/TIT.2023.3334032\">https://doi.org/10.1109/TIT.2023.3334032</a>"},"oa_version":"Preprint","oa":1,"date_published":"2024-02-01T00:00:00Z","author":[{"id":"2ce5da42-b2ea-11eb-bba5-9f264e9d002c","full_name":"Zhang, Yihan","first_name":"Yihan","orcid":"0000-0002-6465-6258","last_name":"Zhang"},{"full_name":"Vatedka, Shashank","first_name":"Shashank","last_name":"Vatedka"}],"publication":"IEEE Transactions on Information Theory","abstract":[{"lang":"eng","text":"We derive lower bounds on the maximal rates for multiple packings in high-dimensional Euclidean spaces. For any N > 0 and L ∈ Z ≥2 , a multiple packing is a set C of points in R n such that any point in R n lies in the intersection of at most L - 1 balls of radius √ nN around points in C . This is a natural generalization of the sphere packing problem. We study the multiple packing problem for both bounded point sets whose points have norm at most √ nP for some constant P > 0, and unbounded point sets whose points are allowed to be anywhere in R n . Given a well-known connection with coding theory, multiple packings can be viewed as the Euclidean analog of list-decodable codes, which are well-studied over finite fields. We derive the best known lower bounds on the optimal multiple packing density. This is accomplished by establishing an inequality which relates the list-decoding error exponent for additive white Gaussian noise channels, a quantity of average-case nature, to the list-decoding radius, a quantity of worst-case nature. We also derive novel bounds on the list-decoding error exponent for infinite constellations and closed-form expressions for the list-decoding error exponents for the power-constrained AWGN channel, which may be of independent interest beyond multiple packing."}],"_id":"14665","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2211.04408"}],"type":"journal_article","language":[{"iso":"eng"}],"publication_identifier":{"eissn":["1557-9654"],"issn":["0018-9448"]},"issue":"2","volume":70,"arxiv":1},{"_id":"14683","publication_identifier":{"issn":["2666-1667"]},"issue":"1","article_number":"102771","volume":5,"pmid":1,"type":"journal_article","language":[{"iso":"eng"}],"publication_status":"published","citation":{"ieee":"N. Amberg, G. T. Cheung, and S. Hippenmeyer, “Protocol for sorting cells from mouse brains labeled with mosaic analysis with double markers by flow cytometry,” <i>STAR Protocols</i>, vol. 5, no. 1. Elsevier, 2024.","mla":"Amberg, Nicole, et al. “Protocol for Sorting Cells from Mouse Brains Labeled with Mosaic Analysis with Double Markers by Flow Cytometry.” <i>STAR Protocols</i>, vol. 5, no. 1, 102771, Elsevier, 2024, doi:<a href=\"https://doi.org/10.1016/j.xpro.2023.102771\">10.1016/j.xpro.2023.102771</a>.","ista":"Amberg N, Cheung GT, Hippenmeyer S. 2024. Protocol for sorting cells from mouse brains labeled with mosaic analysis with double markers by flow cytometry. STAR Protocols. 5(1), 102771.","ama":"Amberg N, Cheung GT, Hippenmeyer S. Protocol for sorting cells from mouse brains labeled with mosaic analysis with double markers by flow cytometry. <i>STAR Protocols</i>. 2024;5(1). doi:<a href=\"https://doi.org/10.1016/j.xpro.2023.102771\">10.1016/j.xpro.2023.102771</a>","short":"N. Amberg, G.T. Cheung, S. Hippenmeyer, STAR Protocols 5 (2024).","chicago":"Amberg, Nicole, Giselle T Cheung, and Simon Hippenmeyer. “Protocol for Sorting Cells from Mouse Brains Labeled with Mosaic Analysis with Double Markers by Flow Cytometry.” <i>STAR Protocols</i>. Elsevier, 2024. <a href=\"https://doi.org/10.1016/j.xpro.2023.102771\">https://doi.org/10.1016/j.xpro.2023.102771</a>.","apa":"Amberg, N., Cheung, G. T., &#38; Hippenmeyer, S. (2024). Protocol for sorting cells from mouse brains labeled with mosaic analysis with double markers by flow cytometry. <i>STAR Protocols</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.xpro.2023.102771\">https://doi.org/10.1016/j.xpro.2023.102771</a>"},"quality_controlled":"1","acknowledgement":"This research was supported by the Scientific Service Units (SSU) at IST Austria through resources provided by the Imaging & Optics Facility (IOF) and Preclinical Facilities (PCF). N.A. received support from FWF Firnberg-Programme (T 1031). G.C. received support from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement no. 754411 as an ISTplus postdoctoral fellow. This work was also supported by IST Austria institutional funds, FWF SFB F78 to S.H., and the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (grant agreement no. 725780 LinPro) to S.H.","oa_version":"Published Version","keyword":["General Immunology and Microbiology","General Biochemistry","Genetics and Molecular Biology","General Neuroscience"],"author":[{"id":"4CD6AAC6-F248-11E8-B48F-1D18A9856A87","full_name":"Amberg, Nicole","first_name":"Nicole","orcid":"0000-0002-3183-8207","last_name":"Amberg"},{"last_name":"Cheung","orcid":"0000-0001-8457-2572","first_name":"Giselle T","full_name":"Cheung, Giselle T","id":"471195F6-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Hippenmeyer","orcid":"0000-0003-2279-1061","first_name":"Simon","full_name":"Hippenmeyer, Simon","id":"37B36620-F248-11E8-B48F-1D18A9856A87"}],"publication":"STAR Protocols","oa":1,"date_published":"2024-03-15T00:00:00Z","abstract":[{"text":"Mosaic analysis with double markers (MADM) technology enables the generation of genetic mosaic tissue in mice and high-resolution phenotyping at the individual cell level. Here, we present a protocol for isolating MADM-labeled cells with high yield for downstream molecular analyses using fluorescence-activated cell sorting (FACS). We describe steps for generating MADM-labeled mice, perfusion, single-cell suspension, and debris removal. We then detail procedures for cell sorting by FACS and downstream analysis. This protocol is suitable for embryonic to adult mice.\r\nFor complete details on the use and execution of this protocol, please refer to Contreras et al. (2021).1","lang":"eng"}],"ddc":["570"],"publisher":"Elsevier","ec_funded":1,"intvolume":"         5","project":[{"_id":"268F8446-B435-11E9-9278-68D0E5697425","call_identifier":"FWF","name":"Role of Eed in neural stem cell lineage progression","grant_number":"T01031"},{"grant_number":"754411","name":"ISTplus - Postdoctoral Fellowships","call_identifier":"H2020","_id":"260C2330-B435-11E9-9278-68D0E5697425"},{"_id":"059F6AB4-7A3F-11EA-A408-12923DDC885E","grant_number":"F7805","name":"Stem Cell Modulation in Neural Development and Regeneration/ P05-Molecular Mechanisms of Neural Stem Cell Lineage Progression"},{"call_identifier":"H2020","name":"Principles of Neural Stem Cell Lineage Progression in Cerebral Cortex Development","grant_number":"725780","_id":"260018B0-B435-11E9-9278-68D0E5697425"}],"status":"public","day":"15","acknowledged_ssus":[{"_id":"Bio"},{"_id":"PreCl"}],"date_updated":"2025-04-15T08:23:06Z","date_created":"2023-12-13T11:48:05Z","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"article_processing_charge":"Yes (in subscription journal)","title":"Protocol for sorting cells from mouse brains labeled with mosaic analysis with double markers by flow cytometry","department":[{"_id":"SiHi"}],"article_type":"review","year":"2024","external_id":{"pmid":["38070137"]},"doi":"10.1016/j.xpro.2023.102771","file_date_updated":"2024-07-16T11:50:03Z","month":"03","corr_author":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file":[{"relation":"main_file","access_level":"open_access","file_name":"2024_STARProtoc_Amberg.pdf","date_updated":"2024-07-16T11:50:03Z","date_created":"2024-07-16T11:50:03Z","file_id":"17260","content_type":"application/pdf","success":1,"file_size":8871807,"creator":"dernst","checksum":"3f0ee62e04bf5a44b45b035662826e95"}],"scopus_import":"1","has_accepted_license":"1"},{"publisher":"Wiley","ddc":["540"],"ec_funded":1,"project":[{"grant_number":"101034413","name":"IST-BRIDGE: International postdoctoral program","call_identifier":"H2020","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c"}],"intvolume":"        63","isi":1,"status":"public","day":"08","date_created":"2023-12-15T16:10:13Z","date_updated":"2026-04-07T12:27:23Z","tmp":{"short":"CC BY-NC-ND (4.0)","image":"/images/cc_by_nc_nd.png","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)"},"article_processing_charge":"Yes (via OA deal)","title":"To DISP or not? The far‐reaching reaction mechanisms underpinning Lithium‐air batteries","department":[{"_id":"StFr"},{"_id":"GradSch"}],"article_type":"review","year":"2024","external_id":{"pmid":["38095355"],"isi":["001241932700001"]},"doi":"10.1002/anie.202316476","file_date_updated":"2024-07-16T11:54:46Z","month":"07","file":[{"creator":"dernst","checksum":"fe2c23454279eb9d76ed6ca9970c21c7","file_size":4766445,"content_type":"application/pdf","success":1,"date_updated":"2024-07-16T11:54:46Z","date_created":"2024-07-16T11:54:46Z","file_id":"17261","relation":"main_file","file_name":"2024_AngChemieInt_Jethwa.pdf","access_level":"open_access"}],"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","corr_author":"1","has_accepted_license":"1","scopus_import":"1","_id":"14687","volume":63,"publication_identifier":{"eissn":["1521-3773"],"issn":["1433-7851"]},"issue":"28","article_number":"e202316476","language":[{"iso":"eng"}],"type":"journal_article","pmid":1,"related_material":{"record":[{"id":"20607","relation":"dissertation_contains","status":"public"}]},"publication_status":"published","citation":{"apa":"Jethwa, R. B., Mondal, S., Pant, B., &#38; Freunberger, S. A. (2024). To DISP or not? The far‐reaching reaction mechanisms underpinning Lithium‐air batteries. <i>Angewandte Chemie International Edition</i>. Wiley. <a href=\"https://doi.org/10.1002/anie.202316476\">https://doi.org/10.1002/anie.202316476</a>","ama":"Jethwa RB, Mondal S, Pant B, Freunberger SA. To DISP or not? The far‐reaching reaction mechanisms underpinning Lithium‐air batteries. <i>Angewandte Chemie International Edition</i>. 2024;63(28). doi:<a href=\"https://doi.org/10.1002/anie.202316476\">10.1002/anie.202316476</a>","short":"R.B. Jethwa, S. Mondal, B. Pant, S.A. Freunberger, Angewandte Chemie International Edition 63 (2024).","chicago":"Jethwa, Rajesh B, Soumyadip Mondal, Bhargavi Pant, and Stefan Alexander Freunberger. “To DISP or Not? The Far‐reaching Reaction Mechanisms Underpinning Lithium‐air Batteries.” <i>Angewandte Chemie International Edition</i>. Wiley, 2024. <a href=\"https://doi.org/10.1002/anie.202316476\">https://doi.org/10.1002/anie.202316476</a>.","ista":"Jethwa RB, Mondal S, Pant B, Freunberger SA. 2024. To DISP or not? The far‐reaching reaction mechanisms underpinning Lithium‐air batteries. Angewandte Chemie International Edition. 63(28), e202316476.","mla":"Jethwa, Rajesh B., et al. “To DISP or Not? The Far‐reaching Reaction Mechanisms Underpinning Lithium‐air Batteries.” <i>Angewandte Chemie International Edition</i>, vol. 63, no. 28, e202316476, Wiley, 2024, doi:<a href=\"https://doi.org/10.1002/anie.202316476\">10.1002/anie.202316476</a>.","ieee":"R. B. Jethwa, S. Mondal, B. Pant, and S. A. Freunberger, “To DISP or not? The far‐reaching reaction mechanisms underpinning Lithium‐air batteries,” <i>Angewandte Chemie International Edition</i>, vol. 63, no. 28. Wiley, 2024."},"quality_controlled":"1","acknowledgement":"S.A.F. is indebted to ISTA for support. R.B.J. thanks the European Union's Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No 101034413 for funding. B.P. thanks Alistore ERI for providing a PhD scholarship.","oa_version":"Published Version","keyword":["General Chemistry","Catalysis"],"publication":"Angewandte Chemie International Edition","author":[{"first_name":"Rajesh B","full_name":"Jethwa, Rajesh B","id":"4cc538d5-803f-11ed-ab7e-8139573aad8f","last_name":"Jethwa","orcid":"0000-0002-0404-4356"},{"last_name":"Mondal","first_name":"Soumyadip","full_name":"Mondal, Soumyadip","id":"d25d21ef-dc8d-11ea-abe3-ec4576307f48"},{"first_name":"Bhargavi","id":"50c64d4d-eb97-11eb-a6c2-d33e5e14f112","full_name":"Pant, Bhargavi","last_name":"Pant"},{"last_name":"Freunberger","orcid":"0000-0003-2902-5319","first_name":"Stefan Alexander","full_name":"Freunberger, Stefan Alexander","id":"A8CA28E6-CE23-11E9-AD2D-EC27E6697425"}],"oa":1,"date_published":"2024-07-08T00:00:00Z","abstract":[{"lang":"eng","text":"The short history of research on Li-O2 batteries has seen a remarkable number of mechanistic U-turns over the years. From the initial use of carbonate electrolytes, that were then found to be entirely unsuitable, to the belief that (su)peroxide was solely responsible for degradation, before the more reactive singlet oxygen was found to form, to the hypothesis that capacity depends on a competing surface/solution mechanism before a practically exclusive solution mechanism was identified. Herein, we argue for an ever-fresh look at the reported data without bias towards supposedly established explanations. We explain how the latest findings on rate and capacity limits, as well as the origin of side reactions, are connected via the disproportionation (DISP) step in the (dis)charge mechanism. Therefrom, directions emerge for the design of electrolytes and mediators on how to suppress side reactions and to enable high rate and high reversible capacity."}]},{"intvolume":"       248","isi":1,"status":"public","day":"29","date_updated":"2025-09-04T11:34:30Z","date_created":"2023-12-20T10:48:09Z","publisher":"Royal Society of Chemistry","month":"01","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","scopus_import":"1","article_processing_charge":"No","title":"Towards practical metal–oxygen batteries: General discussion","department":[{"_id":"StFr"}],"article_type":"letter_note","page":"392-411","year":"2024","doi":"10.1039/d3fd90062b","external_id":{"isi":["001130090400001"],"pmid":["38112202"]},"_id":"14701","publication_identifier":{"issn":["1359-6640"],"eissn":["1364-5498"]},"volume":248,"pmid":1,"language":[{"iso":"eng"}],"type":"journal_article","author":[{"first_name":"Lynden A.","full_name":"Archer, Lynden A.","last_name":"Archer"},{"first_name":"Peter G.","full_name":"Bruce, Peter G.","last_name":"Bruce"},{"last_name":"Calvo","first_name":"Ernesto J.","full_name":"Calvo, Ernesto J."},{"first_name":"Daniel","full_name":"Dewar, Daniel","last_name":"Dewar"},{"full_name":"Ellison, James H. J.","first_name":"James H. J.","last_name":"Ellison"},{"first_name":"Stefan Alexander","id":"A8CA28E6-CE23-11E9-AD2D-EC27E6697425","full_name":"Freunberger, Stefan Alexander","last_name":"Freunberger","orcid":"0000-0003-2902-5319"},{"first_name":"Xiangwen","full_name":"Gao, Xiangwen","last_name":"Gao"},{"first_name":"Laurence J.","full_name":"Hardwick, Laurence J.","last_name":"Hardwick"},{"full_name":"Horwitz, Gabriela","first_name":"Gabriela","last_name":"Horwitz"},{"first_name":"Jürgen","full_name":"Janek, Jürgen","last_name":"Janek"},{"first_name":"Lee R.","full_name":"Johnson, Lee R.","last_name":"Johnson"},{"last_name":"Jordan","full_name":"Jordan, Jack W.","first_name":"Jack W."},{"full_name":"Matsuda, Shoichi","first_name":"Shoichi","last_name":"Matsuda"},{"first_name":"Svetlana","full_name":"Menkin, Svetlana","last_name":"Menkin"},{"full_name":"Mondal, Soumyadip","id":"d25d21ef-dc8d-11ea-abe3-ec4576307f48","first_name":"Soumyadip","last_name":"Mondal"},{"last_name":"Qiu","full_name":"Qiu, Qianyuan","first_name":"Qianyuan"},{"last_name":"Samarakoon","full_name":"Samarakoon, Thukshan","first_name":"Thukshan"},{"first_name":"Israel","full_name":"Temprano, Israel","last_name":"Temprano"},{"last_name":"Uosaki","full_name":"Uosaki, Kohei","first_name":"Kohei"},{"last_name":"Vailaya","full_name":"Vailaya, Ganesh","first_name":"Ganesh"},{"full_name":"Wachsman, Eric D.","first_name":"Eric D.","last_name":"Wachsman"},{"last_name":"Wu","first_name":"Yiying","full_name":"Wu, Yiying"},{"full_name":"Ye, Shen","first_name":"Shen","last_name":"Ye"}],"publication":"Faraday Discussions","date_published":"2024-01-29T00:00:00Z","citation":{"short":"L.A. Archer, P.G. Bruce, E.J. Calvo, D. Dewar, J.H.J. Ellison, S.A. Freunberger, X. Gao, L.J. Hardwick, G. Horwitz, J. Janek, L.R. Johnson, J.W. Jordan, S. Matsuda, S. Menkin, S. Mondal, Q. Qiu, T. Samarakoon, I. Temprano, K. Uosaki, G. Vailaya, E.D. Wachsman, Y. Wu, S. Ye, Faraday Discussions 248 (2024) 392–411.","ama":"Archer LA, Bruce PG, Calvo EJ, et al. Towards practical metal–oxygen batteries: General discussion. <i>Faraday Discussions</i>. 2024;248:392-411. doi:<a href=\"https://doi.org/10.1039/d3fd90062b\">10.1039/d3fd90062b</a>","chicago":"Archer, Lynden A., Peter G. Bruce, Ernesto J. Calvo, Daniel Dewar, James H. J. Ellison, Stefan Alexander Freunberger, Xiangwen Gao, et al. “Towards Practical Metal–Oxygen Batteries: General Discussion.” <i>Faraday Discussions</i>. Royal Society of Chemistry, 2024. <a href=\"https://doi.org/10.1039/d3fd90062b\">https://doi.org/10.1039/d3fd90062b</a>.","apa":"Archer, L. A., Bruce, P. G., Calvo, E. J., Dewar, D., Ellison, J. H. J., Freunberger, S. A., … Ye, S. (2024). Towards practical metal–oxygen batteries: General discussion. <i>Faraday Discussions</i>. Royal Society of Chemistry. <a href=\"https://doi.org/10.1039/d3fd90062b\">https://doi.org/10.1039/d3fd90062b</a>","ieee":"L. A. Archer <i>et al.</i>, “Towards practical metal–oxygen batteries: General discussion,” <i>Faraday Discussions</i>, vol. 248. Royal Society of Chemistry, pp. 392–411, 2024.","mla":"Archer, Lynden A., et al. “Towards Practical Metal–Oxygen Batteries: General Discussion.” <i>Faraday Discussions</i>, vol. 248, Royal Society of Chemistry, 2024, pp. 392–411, doi:<a href=\"https://doi.org/10.1039/d3fd90062b\">10.1039/d3fd90062b</a>.","ista":"Archer LA, Bruce PG, Calvo EJ, Dewar D, Ellison JHJ, Freunberger SA, Gao X, Hardwick LJ, Horwitz G, Janek J, Johnson LR, Jordan JW, Matsuda S, Menkin S, Mondal S, Qiu Q, Samarakoon T, Temprano I, Uosaki K, Vailaya G, Wachsman ED, Wu Y, Ye S. 2024. Towards practical metal–oxygen batteries: General discussion. Faraday Discussions. 248, 392–411."},"publication_status":"published","quality_controlled":"1","oa_version":"None","keyword":["Physical and Theoretical Chemistry"]},{"publisher":"Royal Society of Chemistry","isi":1,"status":"public","intvolume":"       248","date_created":"2023-12-20T10:49:43Z","date_updated":"2025-09-04T11:35:09Z","day":"29","article_type":"letter_note","title":"Materials for stable metal–oxygen battery cathodes: general discussion","department":[{"_id":"StFr"}],"article_processing_charge":"No","external_id":{"pmid":["38109098"],"isi":["001130029600001"]},"doi":"10.1039/d3fd90059b","page":"75-88","year":"2024","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","month":"01","scopus_import":"1","_id":"14702","pmid":1,"type":"journal_article","language":[{"iso":"eng"}],"publication_identifier":{"issn":["1359-6640"],"eissn":["1364-5498"]},"volume":248,"quality_controlled":"1","publication_status":"published","citation":{"ieee":"G. A. Attard <i>et al.</i>, “Materials for stable metal–oxygen battery cathodes: general discussion,” <i>Faraday Discussions</i>, vol. 248. Royal Society of Chemistry, pp. 75–88, 2024.","mla":"Attard, Gary A., et al. “Materials for Stable Metal–Oxygen Battery Cathodes: General Discussion.” <i>Faraday Discussions</i>, vol. 248, Royal Society of Chemistry, 2024, pp. 75–88, doi:<a href=\"https://doi.org/10.1039/d3fd90059b\">10.1039/d3fd90059b</a>.","ista":"Attard GA, Calvo EJ, Curtiss LA, Dewar D, Ellison JHJ, Gao X, Grey CP, Hardwick LJ, Horwitz G, Janek J, Johnson LR, Jordan JW, Matsuda S, Mondal S, Neale AR, Ortiz-Vitoriano N, Temprano I, Vailaya G, Wachsman ED, Wang H-H, Wu Y, Ye S. 2024. Materials for stable metal–oxygen battery cathodes: general discussion. Faraday Discussions. 248, 75–88.","ama":"Attard GA, Calvo EJ, Curtiss LA, et al. Materials for stable metal–oxygen battery cathodes: general discussion. <i>Faraday Discussions</i>. 2024;248:75-88. doi:<a href=\"https://doi.org/10.1039/d3fd90059b\">10.1039/d3fd90059b</a>","short":"G.A. Attard, E.J. Calvo, L.A. Curtiss, D. Dewar, J.H.J. Ellison, X. Gao, C.P. Grey, L.J. Hardwick, G. Horwitz, J. Janek, L.R. Johnson, J.W. Jordan, S. Matsuda, S. Mondal, A.R. Neale, N. Ortiz-Vitoriano, I. Temprano, G. Vailaya, E.D. Wachsman, H.-H. Wang, Y. Wu, S. Ye, Faraday Discussions 248 (2024) 75–88.","chicago":"Attard, Gary A., Ernesto J. Calvo, Larry A. Curtiss, Daniel Dewar, James H. J. Ellison, Xiangwen Gao, Clare P. Grey, et al. “Materials for Stable Metal–Oxygen Battery Cathodes: General Discussion.” <i>Faraday Discussions</i>. Royal Society of Chemistry, 2024. <a href=\"https://doi.org/10.1039/d3fd90059b\">https://doi.org/10.1039/d3fd90059b</a>.","apa":"Attard, G. A., Calvo, E. J., Curtiss, L. A., Dewar, D., Ellison, J. H. J., Gao, X., … Ye, S. (2024). Materials for stable metal–oxygen battery cathodes: general discussion. <i>Faraday Discussions</i>. Royal Society of Chemistry. <a href=\"https://doi.org/10.1039/d3fd90059b\">https://doi.org/10.1039/d3fd90059b</a>"},"keyword":["Physical and Theoretical Chemistry"],"oa_version":"None","date_published":"2024-01-29T00:00:00Z","author":[{"last_name":"Attard","first_name":"Gary A.","full_name":"Attard, Gary A."},{"last_name":"Calvo","full_name":"Calvo, Ernesto J.","first_name":"Ernesto J."},{"last_name":"Curtiss","full_name":"Curtiss, Larry A.","first_name":"Larry A."},{"last_name":"Dewar","full_name":"Dewar, Daniel","first_name":"Daniel"},{"first_name":"James H. J.","full_name":"Ellison, James H. J.","last_name":"Ellison"},{"first_name":"Xiangwen","full_name":"Gao, Xiangwen","last_name":"Gao"},{"first_name":"Clare P.","full_name":"Grey, Clare P.","last_name":"Grey"},{"full_name":"Hardwick, Laurence J.","first_name":"Laurence J.","last_name":"Hardwick"},{"first_name":"Gabriela","full_name":"Horwitz, Gabriela","last_name":"Horwitz"},{"full_name":"Janek, Juergen","first_name":"Juergen","last_name":"Janek"},{"last_name":"Johnson","first_name":"Lee R.","full_name":"Johnson, Lee R."},{"first_name":"Jack W.","full_name":"Jordan, Jack W.","last_name":"Jordan"},{"last_name":"Matsuda","full_name":"Matsuda, Shoichi","first_name":"Shoichi"},{"last_name":"Mondal","id":"d25d21ef-dc8d-11ea-abe3-ec4576307f48","full_name":"Mondal, Soumyadip","first_name":"Soumyadip"},{"first_name":"Alex R.","full_name":"Neale, Alex R.","last_name":"Neale"},{"full_name":"Ortiz-Vitoriano, Nagore","first_name":"Nagore","last_name":"Ortiz-Vitoriano"},{"full_name":"Temprano, Israel","first_name":"Israel","last_name":"Temprano"},{"first_name":"Ganesh","full_name":"Vailaya, Ganesh","last_name":"Vailaya"},{"full_name":"Wachsman, Eric D.","first_name":"Eric D.","last_name":"Wachsman"},{"first_name":"Hsien-Hau","full_name":"Wang, Hsien-Hau","last_name":"Wang"},{"last_name":"Wu","first_name":"Yiying","full_name":"Wu, Yiying"},{"last_name":"Ye","first_name":"Shen","full_name":"Ye, Shen"}],"publication":"Faraday Discussions"},{"_id":"14703","main_file_link":[{"url":"https://doi.org/10.1007/s10208-024-09686-3","open_access":"1"}],"publication_identifier":{"eissn":["1615-3383"],"issn":["1615-3375"]},"OA_type":"hybrid","type":"journal_article","language":[{"iso":"eng"}],"arxiv":1,"citation":{"apa":"Ishida, S., &#38; Lavenant, H. (2024). Quantitative convergence of a discretization of dynamic optimal transport using the dual formulation. <i>Foundations of Computational Mathematics</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s10208-024-09686-3\">https://doi.org/10.1007/s10208-024-09686-3</a>","short":"S. Ishida, H. Lavenant, Foundations of Computational Mathematics (2024).","ama":"Ishida S, Lavenant H. Quantitative convergence of a discretization of dynamic optimal transport using the dual formulation. <i>Foundations of Computational Mathematics</i>. 2024. doi:<a href=\"https://doi.org/10.1007/s10208-024-09686-3\">10.1007/s10208-024-09686-3</a>","chicago":"Ishida, Sadashige, and Hugo Lavenant. “Quantitative Convergence of a Discretization of Dynamic Optimal Transport Using the Dual Formulation.” <i>Foundations of Computational Mathematics</i>. Springer Nature, 2024. <a href=\"https://doi.org/10.1007/s10208-024-09686-3\">https://doi.org/10.1007/s10208-024-09686-3</a>.","ista":"Ishida S, Lavenant H. 2024. Quantitative convergence of a discretization of dynamic optimal transport using the dual formulation. Foundations of Computational Mathematics.","ieee":"S. Ishida and H. Lavenant, “Quantitative convergence of a discretization of dynamic optimal transport using the dual formulation,” <i>Foundations of Computational Mathematics</i>. Springer Nature, 2024.","mla":"Ishida, Sadashige, and Hugo Lavenant. “Quantitative Convergence of a Discretization of Dynamic Optimal Transport Using the Dual Formulation.” <i>Foundations of Computational Mathematics</i>, Springer Nature, 2024, doi:<a href=\"https://doi.org/10.1007/s10208-024-09686-3\">10.1007/s10208-024-09686-3</a>."},"publication_status":"epub_ahead","quality_controlled":"1","acknowledgement":"The authors would like to thank Chris Wojtan for his continuous support and several interesting discussions. Part of this research was performed during two visits: one of SI to the BIDSA research center at Bocconi University, and one of HL to the Institute of Science and Technology Austria. Both host institutions are warmly acknowledged for the hospitality. HL is partially supported by the MUR-Prin 2022-202244A7YL “Gradient Flows and Non-Smooth Geometric Structures with Applications to Optimization and Machine Learning”, funded by the European Union - Next Generation EU. SI is supported in part by ERC Consolidator Grant 101045083 “CoDiNA” funded by the European Research Council.","oa_version":"Published Version","keyword":["Optimal transport","Hamilton-Jacobi equation","convex optimization"],"author":[{"first_name":"Sadashige","full_name":"Ishida, Sadashige","id":"6F7C4B96-A8E9-11E9-A7CA-09ECE5697425","last_name":"Ishida","orcid":"0000-0002-3121-3100"},{"last_name":"Lavenant","full_name":"Lavenant, Hugo","first_name":"Hugo"}],"publication":"Foundations of Computational Mathematics","oa":1,"date_published":"2024-11-11T00:00:00Z","OA_place":"publisher","abstract":[{"text":"We present a discretization of the dynamic optimal transport problem for which we can obtain the convergence rate for the value of the transport cost to its continuous value when the temporal and spatial stepsize vanish. This convergence result does not require any regularity assumption on the measures, though experiments suggest that the rate is not sharp. Via an analysis of the duality gap we also obtain the convergence rates for the gradient of the optimal potentials and the velocity field under mild regularity assumptions. To obtain such rates we discretize the dual formulation of the dynamic optimal transport problem and use the mature literature related to the error due to discretizing the Hamilton-Jacobi equation.","lang":"eng"}],"ddc":["000"],"publisher":"Springer Nature","project":[{"_id":"34bc2376-11ca-11ed-8bc3-9a3b3961a088","grant_number":"101045083","name":"Computational Discovery of Numerical Algorithms for Animation and Simulation of Natural Phenomena"}],"isi":1,"status":"public","day":"11","date_updated":"2026-06-18T17:37:10Z","date_created":"2023-12-21T10:14:37Z","article_processing_charge":"Yes (via OA deal)","article_type":"original","department":[{"_id":"GradSch"},{"_id":"ChWo"}],"title":"Quantitative convergence of a discretization of dynamic optimal transport using the dual formulation","year":"2024","doi":"10.1007/s10208-024-09686-3","external_id":{"isi":["001352503300001"],"arxiv":["2312.12213"]},"month":"11","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","corr_author":"1","scopus_import":"1"},{"department":[{"_id":"GradSch"},{"_id":"BeVi"}],"title":"Data from \"Chromosome-level assembly of Artemia franciscana sheds light on sex-chromosome differentiation\"","contributor":[{"first_name":"Vincent K","id":"57854184-AAE0-11E9-8D04-98D6E5697425","last_name":"Bett","contributor_type":"researcher"},{"first_name":"Ariana","id":"2A0848E2-F248-11E8-B48F-1D18A9856A87","last_name":"Macon","contributor_type":"project_member"},{"last_name":"Vicoso","orcid":"0000-0002-4579-8306","contributor_type":"supervisor","first_name":"Beatriz","id":"49E1C5C6-F248-11E8-B48F-1D18A9856A87"},{"id":"0B46FACA-A8E1-11E9-9BD3-79D1E5697425","first_name":"Marwan N","orcid":"0000-0002-5328-7231","contributor_type":"researcher","last_name":"Elkrewi"}],"citation":{"apa":"Elkrewi, M. N. (2024). Data from “Chromosome-level assembly of Artemia franciscana sheds light on sex-chromosome differentiation.” Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:14705\">https://doi.org/10.15479/AT:ISTA:14705</a>","ama":"Elkrewi MN. Data from “Chromosome-level assembly of Artemia franciscana sheds light on sex-chromosome differentiation.” 2024. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:14705\">10.15479/AT:ISTA:14705</a>","short":"M.N. Elkrewi, (2024).","chicago":"Elkrewi, Marwan N. “Data from ‘Chromosome-Level Assembly of Artemia Franciscana Sheds Light on Sex-Chromosome Differentiation.’” Institute of Science and Technology Austria, 2024. <a href=\"https://doi.org/10.15479/AT:ISTA:14705\">https://doi.org/10.15479/AT:ISTA:14705</a>.","ista":"Elkrewi MN. 2024. Data from ‘Chromosome-level assembly of Artemia franciscana sheds light on sex-chromosome differentiation’, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:14705\">10.15479/AT:ISTA:14705</a>.","ieee":"M. N. Elkrewi, “Data from ‘Chromosome-level assembly of Artemia franciscana sheds light on sex-chromosome differentiation.’” Institute of Science and Technology Austria, 2024.","mla":"Elkrewi, Marwan N. <i>Data from “Chromosome-Level Assembly of Artemia Franciscana Sheds Light on Sex-Chromosome Differentiation.”</i> Institute of Science and Technology Austria, 2024, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:14705\">10.15479/AT:ISTA:14705</a>."},"article_processing_charge":"No","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"doi":"10.15479/AT:ISTA:14705","keyword":["sex chromosome evolution","genome assembly","dosage compensation"],"oa_version":"Published Version","year":"2024","corr_author":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_published":"2024-01-02T00:00:00Z","oa":1,"file":[{"file_name":"readme.txt.txt","access_level":"open_access","relation":"main_file","file_id":"14707","date_created":"2023-12-22T13:54:21Z","date_updated":"2023-12-22T13:54:21Z","success":1,"content_type":"text/plain","file_size":847,"checksum":"bdaf1392867786634ec5466d528c36ca","creator":"melkrewi"},{"relation":"main_file","access_level":"open_access","file_name":"data_artemia_franciscana_genome.zip","content_type":"application/x-zip-compressed","success":1,"date_updated":"2023-12-22T14:14:06Z","date_created":"2023-12-22T14:14:06Z","file_id":"14708","creator":"melkrewi","checksum":"973e1cbdab923a71709782177980829f","file_size":343632753}],"author":[{"last_name":"Elkrewi","orcid":"0000-0002-5328-7231","first_name":"Marwan N","id":"0B46FACA-A8E1-11E9-9BD3-79D1E5697425","full_name":"Elkrewi, Marwan N"}],"file_date_updated":"2023-12-22T14:14:06Z","month":"01","abstract":[{"lang":"eng","text":"Since the commercialization of brine shrimp (genus Artemia) in the 1950s, this lineage, and in particular the model species Artemia franciscana, has been the subject of extensive research. However, our understanding of the genetic mechanisms underlying various aspects of their reproductive biology, including sex determination, are still lacking. This is partly due to the scarcity of genomic resources for Artemia species and crustaceans in general. Here, we present a chromosome-level genome assembly of Artemia franciscana (Kellogg 1906), from the Great Salt Lake, USA. The genome is 1GB, and the majority of the genome (81%) is scaffolded into 21 linkage groups using a previously published high-density linkage map. We performed coverage and FST analyses using male and female genomic and transcriptomic reads to quantify the extent of differentiation between the Z and W chromosomes. Additionally, we quantified the expression levels in male and female heads and gonads and found further evidence for dosage compensation in this species."}],"has_accepted_license":"1","ddc":["576"],"_id":"14705","publisher":"Institute of Science and Technology Austria","type":"research_data","status":"public","related_material":{"record":[{"id":"15009","status":"public","relation":"used_in_publication"}]},"project":[{"grant_number":"F8810","name":"The highjacking of meiosis for asexual reproduction","_id":"34ae1506-11ca-11ed-8bc3-c14f4c474396"}],"date_updated":"2025-09-04T12:05:42Z","date_created":"2023-12-22T13:40:48Z","day":"02"}]