[{"acknowledgement":"We thank F. J. Simons for the codes for computing Slepian functions,\r\nM. Rempel and R. Cameron for their insights into solar convection, J.\r\nW. Lord for the numerical simulations and J. Naranjo for his help with\r\nthe NYUAD NetDRMS system. This research was carried out with the\r\nHigh Performance Computing resources at NYUAD. The datasets were\r\nprepared in the data centre at the Center for Space Science of NYUAD.\r\nThis research is based upon work supported by Tamkeen under the\r\nNYUAD Research Institute (Grant Nos G1502 and CASS to C.S.H,\r\nS.H. and K.R.S.). S.H. acknowledges funding from the Department\r\nof Atomic Energy, India. K.R.S. and S.H. acknowledge support from\r\nthe Ofice of Sponsored Research of King Abdullah University of\r\nScience and Technology (Award No. OSR-CRG2020-4342). S.B.D.\r\nacknowledges funding from the Elisabeth H. and F. A. Dahlen Award\r\n2022 by the Department of Geosciences, Princeton University. S.B.D.\r\nalso acknowledges funding from the European Union’s Horizon 2020\r\nresearch and innovation programme under a Marie Skłodowska-Curie\r\ngrant (Grant Agreement No. 101034413). Some data products were\r\nprocessed and downloaded from the German Data Center for SDO,\r\nwhich is funded by the German Aerospace Center (DLR Grant No.\r\n500L1701).","month":"09","volume":8,"doi":"10.1038/s41550-024-02304-w","quality_controlled":"1","oa_version":"None","citation":{"mla":"Hanson, Chris S., et al. “Supergranular-Scale Solar Convection Not Explained by Mixing-Length Theory.” <i>Nature Astronomy</i>, vol. 8, Springer Nature, 2024, pp. 1088–101, doi:<a href=\"https://doi.org/10.1038/s41550-024-02304-w\">10.1038/s41550-024-02304-w</a>.","apa":"Hanson, C. S., Das, S. B., Mani, P., Hanasoge, S., &#38; Sreenivasan, K. R. (2024). Supergranular-scale solar convection not explained by mixing-length theory. <i>Nature Astronomy</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41550-024-02304-w\">https://doi.org/10.1038/s41550-024-02304-w</a>","short":"C.S. Hanson, S.B. Das, P. Mani, S. Hanasoge, K.R. Sreenivasan, Nature Astronomy 8 (2024) 1088–1101.","chicago":"Hanson, Chris S., Srijan B Das, Prasad Mani, Shravan Hanasoge, and Katepalli R. Sreenivasan. “Supergranular-Scale Solar Convection Not Explained by Mixing-Length Theory.” <i>Nature Astronomy</i>. Springer Nature, 2024. <a href=\"https://doi.org/10.1038/s41550-024-02304-w\">https://doi.org/10.1038/s41550-024-02304-w</a>.","ieee":"C. S. Hanson, S. B. Das, P. Mani, S. Hanasoge, and K. R. Sreenivasan, “Supergranular-scale solar convection not explained by mixing-length theory,” <i>Nature Astronomy</i>, vol. 8. Springer Nature, pp. 1088–1101, 2024.","ama":"Hanson CS, Das SB, Mani P, Hanasoge S, Sreenivasan KR. Supergranular-scale solar convection not explained by mixing-length theory. <i>Nature Astronomy</i>. 2024;8:1088-1101. doi:<a href=\"https://doi.org/10.1038/s41550-024-02304-w\">10.1038/s41550-024-02304-w</a>","ista":"Hanson CS, Das SB, Mani P, Hanasoge S, Sreenivasan KR. 2024. Supergranular-scale solar convection not explained by mixing-length theory. Nature Astronomy. 8, 1088–1101."},"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","day":"01","date_updated":"2025-09-08T08:04:56Z","isi":1,"_id":"17189","intvolume":"         8","article_type":"original","year":"2024","ec_funded":1,"language":[{"iso":"eng"}],"status":"public","date_created":"2024-06-30T22:01:05Z","article_processing_charge":"No","page":"1088-1101","title":"Supergranular-scale solar convection not explained by mixing-length theory","publication":"Nature Astronomy","OA_type":"closed access","publisher":"Springer Nature","scopus_import":"1","type":"journal_article","abstract":[{"lang":"eng","text":"Supergranules, which are solar flow features with a lateral scale of 30,000–40,000 km and a lifetime of ~24 h, form a prominent component of the Sun’s convective spectrum. However, their internal flows, which can be probed only by helioseismology, are not well understood. We analyse dopplergrams recorded by the Solar Dynamics Observatory satellite to identify and characterize ~23,000 supergranules. We find that the vertical flows peak at a depth of ~10,000 km, and remain invariant over the full range of lateral supergranular scales, contrary to numerical predictions. We also infer that, within the local seismic resolution (≳5,000 km), downflows are ~40% weaker than upflows, indicating an apparent mass-flux imbalance. This may imply that the descending flows also comprise plumes, which maintain the mass balance but are simply too small to be detected by seismic waves. These results challenge the widely used mixing-length description of solar convection."}],"date_published":"2024-09-01T00:00:00Z","author":[{"first_name":"Chris S.","last_name":"Hanson","full_name":"Hanson, Chris S."},{"full_name":"Das, Srijan B","last_name":"Das","orcid":"0000-0003-0896-7972","first_name":"Srijan B","id":"9ce7c423-dacf-11ed-8942-e09c6cb27149"},{"first_name":"Prasad","last_name":"Mani","full_name":"Mani, Prasad"},{"first_name":"Shravan","last_name":"Hanasoge","full_name":"Hanasoge, Shravan"},{"last_name":"Sreenivasan","full_name":"Sreenivasan, Katepalli R.","first_name":"Katepalli R."}],"publication_status":"published","publication_identifier":{"eissn":["2397-3366"]},"department":[{"_id":"LiBu"}],"project":[{"call_identifier":"H2020","grant_number":"101034413","name":"IST-BRIDGE: International postdoctoral program","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c"}],"external_id":{"isi":["001254181700001"]}},{"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","citation":{"short":"H. Edelsbrunner, A. Garber, M. Ghafaris, T. Heiss, M. Saghafiant, M. Wintraecken, SIAM Journal on Discrete Mathematics 38 (2024) 1784–1807.","ieee":"H. Edelsbrunner, A. Garber, M. Ghafaris, T. Heiss, M. Saghafiant, and M. Wintraecken, “Brillouin zones of integer lattices and their perturbations,” <i>SIAM Journal on Discrete Mathematics</i>, vol. 38, no. 2. Society for Industrial and Applied Mathematics, pp. 1784–1807, 2024.","ista":"Edelsbrunner H, Garber A, Ghafaris M, Heiss T, Saghafiant M, Wintraecken M. 2024. Brillouin zones of integer lattices and their perturbations. SIAM Journal on Discrete Mathematics. 38(2), 1784–1807.","ama":"Edelsbrunner H, Garber A, Ghafaris M, Heiss T, Saghafiant M, Wintraecken M. Brillouin zones of integer lattices and their perturbations. <i>SIAM Journal on Discrete Mathematics</i>. 2024;38(2):1784-1807. doi:<a href=\"https://doi.org/10.1137/22M1489071\">10.1137/22M1489071</a>","chicago":"Edelsbrunner, Herbert, Alexey Garber, Mohadese Ghafaris, Teresa Heiss, Morteza Saghafiant, and Mathijs Wintraecken. “Brillouin Zones of Integer Lattices and Their Perturbations.” <i>SIAM Journal on Discrete Mathematics</i>. Society for Industrial and Applied Mathematics, 2024. <a href=\"https://doi.org/10.1137/22M1489071\">https://doi.org/10.1137/22M1489071</a>.","mla":"Edelsbrunner, Herbert, et al. “Brillouin Zones of Integer Lattices and Their Perturbations.” <i>SIAM Journal on Discrete Mathematics</i>, vol. 38, no. 2, Society for Industrial and Applied Mathematics, 2024, pp. 1784–807, doi:<a href=\"https://doi.org/10.1137/22M1489071\">10.1137/22M1489071</a>.","apa":"Edelsbrunner, H., Garber, A., Ghafaris, M., Heiss, T., Saghafiant, M., &#38; Wintraecken, M. (2024). Brillouin zones of integer lattices and their perturbations. <i>SIAM Journal on Discrete Mathematics</i>. Society for Industrial and Applied Mathematics. <a href=\"https://doi.org/10.1137/22M1489071\">https://doi.org/10.1137/22M1489071</a>"},"isi":1,"date_updated":"2025-09-08T08:06:04Z","day":"07","intvolume":"        38","_id":"17190","ec_funded":1,"article_type":"original","year":"2024","acknowledgement":"The second author is partially supported by the Alexander von Humboldt Foundation. The sixth author is supported by the European Union's Horizon 2020 research and innovation programme under Marie Sklodowska-Curie grant agreement 754411, and by Austrian Science Fund(FWF) grant M-3073. All other authors are supported by European Research Council (ERC) grant 788183, by the Wittgenstein Prize, by Austrian Science Fund (FWF) grant Z 342-N31, and by the DFG Collaborative Research Center TRR 109, Austrian Science Fund (FWF) grant I 02979-N35.","volume":38,"month":"06","issue":"2","oa_version":"Preprint","quality_controlled":"1","doi":"10.1137/22M1489071","type":"journal_article","date_published":"2024-06-07T00:00:00Z","abstract":[{"lang":"eng","text":"For a locally finite set, 𝐴⊆ℝ𝑑\r\n, the 𝑘\r\nth Brillouin zone of 𝑎∈𝐴\r\n is the region of points 𝑥∈ℝ𝑑\r\n for which ‖𝑥−𝑎‖\r\n is the 𝑘\r\nth smallest among the Euclidean distances between 𝑥\r\n and the points in 𝐴\r\n. If 𝐴\r\n is a lattice, the 𝑘\r\nth Brillouin zones of the points in 𝐴\r\n are translates of each other, and together they tile space. Depending on the value of 𝑘\r\n, they express medium- or long-range order in the set. We study fundamental geometric and combinatorial properties of Brillouin zones, focusing on the integer lattice and its perturbations. Our results include the stability of a Brillouin zone under perturbations, a linear upper bound on the number of chambers in a zone for lattices in ℝ2\r\n, and the convergence of the maximum volume of a chamber to zero for the integer lattice."}],"publisher":"Society for Industrial and Applied Mathematics","scopus_import":"1","publication_status":"published","department":[{"_id":"HeEd"}],"publication_identifier":{"issn":["0895-4801"]},"oa":1,"author":[{"full_name":"Edelsbrunner, Herbert","orcid":"0000-0002-9823-6833","last_name":"Edelsbrunner","first_name":"Herbert","id":"3FB178DA-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Alexey","last_name":"Garber","full_name":"Garber, Alexey"},{"first_name":"Mohadese","last_name":"Ghafaris","full_name":"Ghafaris, Mohadese"},{"first_name":"Teresa","id":"4879BB4E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-1780-2689","last_name":"Heiss","full_name":"Heiss, Teresa"},{"last_name":"Saghafiant","full_name":"Saghafiant, Morteza","first_name":"Morteza"},{"orcid":"0000-0002-7472-2220","last_name":"Wintraecken","full_name":"Wintraecken, Mathijs","id":"307CFBC8-F248-11E8-B48F-1D18A9856A87","first_name":"Mathijs"}],"project":[{"_id":"260C2330-B435-11E9-9278-68D0E5697425","name":"ISTplus - Postdoctoral Fellowships","grant_number":"754411","call_identifier":"H2020"},{"call_identifier":"H2020","name":"Alpha Shape Theory Extended","_id":"266A2E9E-B435-11E9-9278-68D0E5697425","grant_number":"788183"},{"name":"Learning and triangulating manifolds via collapses","_id":"fc390959-9c52-11eb-aca3-afa58bd282b2","grant_number":"M03073"},{"call_identifier":"FWF","grant_number":"I02979-N35","_id":"2561EBF4-B435-11E9-9278-68D0E5697425","name":"Persistence and stability of geometric complexes"},{"call_identifier":"FWF","name":"Mathematics, Computer Science","_id":"268116B8-B435-11E9-9278-68D0E5697425","grant_number":"Z00342"}],"main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2204.01077"}],"external_id":{"arxiv":["2204.01077"],"isi":["001292728600001"]},"language":[{"iso":"eng"}],"corr_author":"1","arxiv":1,"page":"1784-1807","article_processing_charge":"No","date_created":"2024-06-30T22:01:05Z","status":"public","publication":"SIAM Journal on Discrete Mathematics","title":"Brillouin zones of integer lattices and their perturbations"},{"external_id":{"isi":["001251509300001"],"pmid":["38907047"]},"date_published":"2024-06-21T00:00:00Z","abstract":[{"text":"Dendritic cells migrate to and from lymph nodes in response to chemokine gradients.Data now show that steady-state migration of these cells can be triggered by a mechanosensitive pathway.","lang":"eng"}],"type":"journal_article","publisher":"Springer Nature","scopus_import":"1","author":[{"id":"d993a7b2-292f-11ed-aaac-fb045a912e31","first_name":"Sergio","orcid":"0000-0002-2253-8771","last_name":"Lembo","full_name":"Lembo, Sergio"},{"full_name":"Sixt, Michael K","orcid":"0000-0002-6620-9179","last_name":"Sixt","first_name":"Michael K","id":"41E9FBEA-F248-11E8-B48F-1D18A9856A87"}],"publication_status":"published","publication_identifier":{"eissn":["1529-2916"],"issn":["1529-2908"]},"department":[{"_id":"MiSi"}],"article_processing_charge":"No","date_created":"2024-06-30T22:01:05Z","pmid":1,"status":"public","page":"1131–1132 ","title":"Nuclear squeezing wakes up dendritic cells","publication":"Nature Immunology","corr_author":"1","language":[{"iso":"eng"}],"_id":"17191","intvolume":"        25","year":"2024","article_type":"letter_note","citation":{"apa":"Lembo, S., &#38; Sixt, M. K. (2024). Nuclear squeezing wakes up dendritic cells. <i>Nature Immunology</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41590-024-01881-2\">https://doi.org/10.1038/s41590-024-01881-2</a>","mla":"Lembo, Sergio, and Michael K. Sixt. “Nuclear Squeezing Wakes up Dendritic Cells.” <i>Nature Immunology</i>, vol. 25, Springer Nature, 2024, pp. 1131–1132, doi:<a href=\"https://doi.org/10.1038/s41590-024-01881-2\">10.1038/s41590-024-01881-2</a>.","ista":"Lembo S, Sixt MK. 2024. Nuclear squeezing wakes up dendritic cells. Nature Immunology. 25, 1131–1132.","ama":"Lembo S, Sixt MK. Nuclear squeezing wakes up dendritic cells. <i>Nature Immunology</i>. 2024;25:1131–1132. doi:<a href=\"https://doi.org/10.1038/s41590-024-01881-2\">10.1038/s41590-024-01881-2</a>","chicago":"Lembo, Sergio, and Michael K Sixt. “Nuclear Squeezing Wakes up Dendritic Cells.” <i>Nature Immunology</i>. Springer Nature, 2024. <a href=\"https://doi.org/10.1038/s41590-024-01881-2\">https://doi.org/10.1038/s41590-024-01881-2</a>.","ieee":"S. Lembo and M. K. Sixt, “Nuclear squeezing wakes up dendritic cells,” <i>Nature Immunology</i>, vol. 25. Springer Nature, pp. 1131–1132, 2024.","short":"S. Lembo, M.K. Sixt, Nature Immunology 25 (2024) 1131–1132."},"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","isi":1,"day":"21","date_updated":"2025-09-08T08:06:56Z","doi":"10.1038/s41590-024-01881-2","oa_version":"None","quality_controlled":"1","month":"06","volume":25},{"has_accepted_license":"1","doi":"10.15479/AT:ISTA:17196","oa_version":"Published Version","acknowledgement":"This research was supported by the Scientific Service Units of ISTA through resources provided by the MIBA Machine Shop and the Nanofabrication facility. ","month":"07","_id":"17196","year":"2024","user_id":"68b8ca59-c5b3-11ee-8790-cd641c68093d","citation":{"ista":"Sagi O. 2024. A gate-tunable transmon in planar Ge, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:17196\">10.15479/AT:ISTA:17196</a>.","chicago":"Sagi, Oliver. “A Gate-Tunable Transmon in Planar Ge.” Institute of Science and Technology Austria, 2024. <a href=\"https://doi.org/10.15479/AT:ISTA:17196\">https://doi.org/10.15479/AT:ISTA:17196</a>.","ama":"Sagi O. A gate-tunable transmon in planar Ge. 2024. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:17196\">10.15479/AT:ISTA:17196</a>","ieee":"O. Sagi, “A gate-tunable transmon in planar Ge.” Institute of Science and Technology Austria, 2024.","short":"O. Sagi, (2024).","apa":"Sagi, O. (2024). A gate-tunable transmon in planar Ge. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:17196\">https://doi.org/10.15479/AT:ISTA:17196</a>","mla":"Sagi, Oliver. <i>A Gate-Tunable Transmon in Planar Ge</i>. Institute of Science and Technology Austria, 2024, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:17196\">10.15479/AT:ISTA:17196</a>."},"date_updated":"2025-10-15T06:31:48Z","day":"04","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"date_created":"2024-07-04T10:14:34Z","article_processing_charge":"No","status":"public","contributor":[{"first_name":"Alessandro","id":"1F2B21A2-F6E7-11E9-9B82-F7DBE5697425","orcid":"0000-0002-2968-611X","last_name":"Crippa","contributor_type":"project_member"},{"contributor_type":"project_member","last_name":"Valentini","id":"C0BB2FAC-D767-11E9-B658-BC13E6697425","first_name":"Marco"},{"first_name":"Marian","id":"396A1950-F248-11E8-B48F-1D18A9856A87","contributor_type":"project_member","last_name":"Janik"},{"first_name":"Levon","id":"7aa1f788-b527-11ee-aa9e-e6111a79e0c7","last_name":"Baghumyan","contributor_type":"project_member"},{"id":"298cf6f3-1ff6-11ee-9fa6-d94cfa0b3352","first_name":"Giorgio","last_name":"Fabris","contributor_type":"project_member"},{"last_name":"Kapoor","contributor_type":"project_member","id":"84b9700b-15b2-11ec-abd3-831089e67615","first_name":"Lucky"},{"id":"2AED110C-F248-11E8-B48F-1D18A9856A87","first_name":"Farid","orcid":"0000-0001-6937-5773","last_name":"Hassani","contributor_type":"project_member"},{"contributor_type":"project_member","orcid":"0000-0001-8112-028X","last_name":"Fink","id":"4B591CBA-F248-11E8-B48F-1D18A9856A87","first_name":"Johannes M"},{"first_name":"Stefano","contributor_type":"project_member","last_name":"Calcaterra"},{"first_name":"Daniel","last_name":"Chrastina","contributor_type":"project_member"},{"first_name":"Giovanni","last_name":"Isella","contributor_type":"project_member"},{"orcid":"0000-0001-8342-202X","last_name":"Katsaros","contributor_type":"supervisor","id":"38DB5788-F248-11E8-B48F-1D18A9856A87","first_name":"Georgios"}],"title":"A gate-tunable transmon in planar Ge","corr_author":"1","project":[{"_id":"c0977eea-5a5b-11eb-8a69-a862db0cf4d1","name":"High impedance circuit quantum electrodynamics with hole spins","grant_number":"I05060"},{"name":"Hybrid Semiconductor - Superconductor Quantum Devices","_id":"262116AA-B435-11E9-9278-68D0E5697425"},{"name":"Merging spin and superconducting qubits in planar Ge","_id":"bd8bd29e-d553-11ed-ba76-f0070d4b237a","grant_number":"P36507"}],"file":[{"access_level":"open_access","file_size":1960182,"file_name":"GeGatemon_DataAnalysis.ipynb","file_id":"17197","relation":"main_file","date_created":"2024-07-04T10:01:51Z","creator":"osagi","date_updated":"2024-07-04T10:01:51Z","checksum":"a9f640a0b72a92171353f3ea14406f0b","success":1,"content_type":"application/octet-stream"},{"content_type":"application/vnd.openxmlformats-officedocument.presentationml.presentation","checksum":"f0feec931233e8e845ade56165c1588f","success":1,"date_updated":"2024-07-04T10:01:50Z","creator":"osagi","date_created":"2024-07-04T10:01:50Z","relation":"main_file","file_id":"17198","file_name":"OlSa_Readme.pptx","file_size":34194,"access_level":"open_access"},{"relation":"main_file","date_created":"2024-07-04T10:11:16Z","file_id":"17199","file_name":"Al_Transmon.zip","access_level":"open_access","file_size":72939292,"success":1,"checksum":"92bb11e3a508d736d01ff0738a1172c7","content_type":"application/x-zip-compressed","creator":"osagi","date_updated":"2024-07-04T10:11:16Z"},{"date_created":"2024-07-04T10:11:40Z","relation":"main_file","file_name":"Gatemon_RT_5nm_1.zip","file_id":"17200","file_size":465618029,"access_level":"open_access","content_type":"application/x-zip-compressed","success":1,"checksum":"871e96fe0ecc97581196e883045cd516","date_updated":"2024-07-04T10:11:40Z","creator":"osagi"},{"date_updated":"2024-07-04T10:11:35Z","creator":"osagi","content_type":"application/x-zip-compressed","checksum":"a3e141af90f0104b7269c8a72370848a","success":1,"file_size":281503513,"access_level":"open_access","file_id":"17201","file_name":"Gatemon_RT_5nm_2.zip","date_created":"2024-07-04T10:11:35Z","relation":"main_file"}],"ddc":["530"],"abstract":[{"text":"This .zip File contains the data for the figures presented in the main text and supplementary material of \"A gate tunable transmon qubit in planar Ge\" by O.Sagi et al. The measurements were done using Qcodes. The description of the files and the instructions on opening the data can be found in the Readme. An additional Jupyter Notebook is attached that walks through the data analysis.","lang":"eng"}],"type":"research_data","date_published":"2024-07-04T00:00:00Z","publisher":"Institute of Science and Technology Austria","author":[{"last_name":"Sagi","full_name":"Sagi, Oliver","id":"71616374-A8E9-11E9-A7CA-09ECE5697425","first_name":"Oliver"}],"department":[{"_id":"GradSch"},{"_id":"GeKa"},{"_id":"JoFi"}],"acknowledged_ssus":[{"_id":"NanoFab"},{"_id":"M-Shop"}],"file_date_updated":"2024-07-04T10:11:40Z","oa":1,"related_material":{"record":[{"status":"public","relation":"used_in_publication","id":"17202"}]}},{"scopus_import":"1","publisher":"Springer Nature","date_published":"2024-07-30T00:00:00Z","abstract":[{"text":"Gate-tunable transmons (gatemons) employing semiconductor Josephson junctions have recently emerged as building blocks for hybrid quantum circuits. In this study, we present a gatemon fabricated in planar Germanium. We induce superconductivity in a two-dimensional hole gas by evaporating aluminum atop a thin spacer, which separates the superconductor from the Ge quantum well. The Josephson junction is then integrated into an Xmon circuit and capacitively coupled to a transmission line resonator. We showcase the qubit tunability in a broad frequency range with resonator and two-tone spectroscopy. Time-domain characterizations reveal energy relaxation and coherence times up to 75 ns. Our results, combined with the recent advances in the spin qubit field, pave the way towards novel hybrid and protected qubits in a group IV, CMOS-compatible material.","lang":"eng"}],"type":"journal_article","ddc":["530"],"OA_type":"gold","acknowledged_ssus":[{"_id":"ScienComp"},{"_id":"M-Shop"},{"_id":"NanoFab"}],"file_date_updated":"2024-08-05T08:38:01Z","oa":1,"related_material":{"link":[{"relation":"erratum","url":"https://doi.org/10.1038/s41467-024-53910-1"}],"record":[{"relation":"research_data","status":"public","id":"17196"},{"relation":"dissertation_contains","status":"public","id":"18076"}]},"department":[{"_id":"GeKa"},{"_id":"JoFi"},{"_id":"GradSch"}],"publication_status":"published","publication_identifier":{"eissn":["2041-1723"]},"author":[{"first_name":"Oliver","id":"71616374-A8E9-11E9-A7CA-09ECE5697425","full_name":"Sagi, Oliver","last_name":"Sagi"},{"last_name":"Crippa","orcid":"0000-0002-2968-611X","full_name":"Crippa, Alessandro","id":"1F2B21A2-F6E7-11E9-9B82-F7DBE5697425","first_name":"Alessandro"},{"id":"C0BB2FAC-D767-11E9-B658-BC13E6697425","first_name":"Marco","last_name":"Valentini","full_name":"Valentini, Marco"},{"full_name":"Janik, Marian","last_name":"Janik","orcid":"0009-0003-9037-8831","first_name":"Marian","id":"396A1950-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Baghumyan","full_name":"Baghumyan, Levon","first_name":"Levon","id":"7aa1f788-b527-11ee-aa9e-e6111a79e0c7"},{"first_name":"Giorgio","id":"298cf6f3-1ff6-11ee-9fa6-d94cfa0b3352","full_name":"Fabris, Giorgio","last_name":"Fabris"},{"full_name":"Kapoor, Lucky","last_name":"Kapoor","id":"84b9700b-15b2-11ec-abd3-831089e67615","first_name":"Lucky"},{"id":"2AED110C-F248-11E8-B48F-1D18A9856A87","first_name":"Farid","full_name":"Hassani, Farid","orcid":"0000-0001-6937-5773","last_name":"Hassani"},{"orcid":"0000-0001-8112-028X","last_name":"Fink","full_name":"Fink, Johannes M","first_name":"Johannes M","id":"4B591CBA-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Stefano","last_name":"Calcaterra","full_name":"Calcaterra, Stefano"},{"first_name":"Daniel","last_name":"Chrastina","full_name":"Chrastina, Daniel"},{"full_name":"Isella, Giovanni","last_name":"Isella","first_name":"Giovanni"},{"last_name":"Katsaros","orcid":"0000-0001-8342-202X","full_name":"Katsaros, Georgios","id":"38DB5788-F248-11E8-B48F-1D18A9856A87","first_name":"Georgios"}],"project":[{"grant_number":"P36507","name":"Merging spin and superconducting qubits in planar Ge","_id":"bd8bd29e-d553-11ed-ba76-f0070d4b237a"},{"_id":"c0977eea-5a5b-11eb-8a69-a862db0cf4d1","name":"High impedance circuit quantum electrodynamics with hole spins","grant_number":"I05060"},{"name":"Hybrid Semiconductor - Superconductor Quantum Devices","_id":"262116AA-B435-11E9-9278-68D0E5697425"},{"call_identifier":"FWF","_id":"3AC91DDA-15DF-11EA-824D-93A3E7B544D1","name":"FWF Open Access Fund"}],"file":[{"creator":"dernst","date_updated":"2024-08-05T08:38:01Z","checksum":"ddf5361dcb6c543e2cea818501c09910","success":1,"content_type":"application/pdf","file_id":"17388","file_name":"2024_NatureComm_Sagi.pdf","access_level":"open_access","file_size":1928001,"relation":"main_file","date_created":"2024-08-05T08:38:01Z"}],"article_number":"6400","external_id":{"arxiv":["2403.16774"],"pmid":["39080279"],"isi":["001281271000022"]},"APC_amount":"6828 EUR","corr_author":"1","language":[{"iso":"eng"}],"arxiv":1,"OA_place":"publisher","DOAJ_listed":"1","pmid":1,"status":"public","date_created":"2024-07-04T11:40:45Z","article_processing_charge":"Yes","publication":"Nature Communications","title":"A gate tunable transmon qubit in planar Ge","citation":{"mla":"Sagi, Oliver, et al. “A Gate Tunable Transmon Qubit in Planar Ge.” <i>Nature Communications</i>, vol. 15, 6400, Springer Nature, 2024, doi:<a href=\"https://doi.org/10.1038/s41467-024-50763-6\">10.1038/s41467-024-50763-6</a>.","apa":"Sagi, O., Crippa, A., Valentini, M., Janik, M., Baghumyan, L., Fabris, G., … Katsaros, G. (2024). A gate tunable transmon qubit in planar Ge. <i>Nature Communications</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41467-024-50763-6\">https://doi.org/10.1038/s41467-024-50763-6</a>","short":"O. Sagi, A. Crippa, M. Valentini, M. Janik, L. Baghumyan, G. Fabris, L. Kapoor, F. Hassani, J.M. Fink, S. Calcaterra, D. Chrastina, G. Isella, G. Katsaros, Nature Communications 15 (2024).","ista":"Sagi O, Crippa A, Valentini M, Janik M, Baghumyan L, Fabris G, Kapoor L, Hassani F, Fink JM, Calcaterra S, Chrastina D, Isella G, Katsaros G. 2024. A gate tunable transmon qubit in planar Ge. Nature Communications. 15, 6400.","ieee":"O. Sagi <i>et al.</i>, “A gate tunable transmon qubit in planar Ge,” <i>Nature Communications</i>, vol. 15. Springer Nature, 2024.","ama":"Sagi O, Crippa A, Valentini M, et al. A gate tunable transmon qubit in planar Ge. <i>Nature Communications</i>. 2024;15. doi:<a href=\"https://doi.org/10.1038/s41467-024-50763-6\">10.1038/s41467-024-50763-6</a>","chicago":"Sagi, Oliver, Alessandro Crippa, Marco Valentini, Marian Janik, Levon Baghumyan, Giorgio Fabris, Lucky Kapoor, et al. “A Gate Tunable Transmon Qubit in Planar Ge.” <i>Nature Communications</i>. Springer Nature, 2024. <a href=\"https://doi.org/10.1038/s41467-024-50763-6\">https://doi.org/10.1038/s41467-024-50763-6</a>."},"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"date_updated":"2025-10-15T06:31:48Z","day":"30","isi":1,"intvolume":"        15","_id":"17202","article_type":"original","year":"2024","acknowledgement":"We acknowledge Lucas Casparis, Jeroen Danon, Valla Fatemi, Morten Kjaergard and Javad Shabani for their valuable insights and comments. This research was supported by the Scientific Service Units of ISTA through resources provided by the MIBA Machine Shop\r\nand the Nanofabrication facility. This research and related results were made possible with the support of the NOMIS Foundation and the FWF Projects with DOI:10.55776/I5060 and DOI:10.55776/P36507. We also acknowledge the NextGenerationEU PRIN project\r\n2022A8CJP3 (GAMESQUAD) for partial financial support.","volume":15,"month":"07","has_accepted_license":"1","quality_controlled":"1","oa_version":"Published Version","doi":"10.1038/s41467-024-50763-6"},{"intvolume":"        43","_id":"17203","year":"2024","article_type":"original","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","citation":{"apa":"Hafner, C., Ly, M., &#38; Wojtan, C. (2024). Spin-it faster: Quadrics solve all topology optimization problems that depend only on mass moments. <i>Transactions on Graphics</i>. Denver, Colorado: Association for Computing Machinery. <a href=\"https://doi.org/10.1145/3658194\">https://doi.org/10.1145/3658194</a>","mla":"Hafner, Christian, et al. “Spin-It Faster: Quadrics Solve All Topology Optimization Problems That Depend Only on Mass Moments.” <i>Transactions on Graphics</i>, vol. 43, no. 4, 78, Association for Computing Machinery, 2024, doi:<a href=\"https://doi.org/10.1145/3658194\">10.1145/3658194</a>.","chicago":"Hafner, Christian, Mickaël Ly, and Chris Wojtan. “Spin-It Faster: Quadrics Solve All Topology Optimization Problems That Depend Only on Mass Moments.” <i>Transactions on Graphics</i>. Association for Computing Machinery, 2024. <a href=\"https://doi.org/10.1145/3658194\">https://doi.org/10.1145/3658194</a>.","ista":"Hafner C, Ly M, Wojtan C. 2024. Spin-it faster: Quadrics solve all topology optimization problems that depend only on mass moments. Transactions on Graphics. 43(4), 78.","ieee":"C. Hafner, M. Ly, and C. Wojtan, “Spin-it faster: Quadrics solve all topology optimization problems that depend only on mass moments,” <i>Transactions on Graphics</i>, vol. 43, no. 4. Association for Computing Machinery, 2024.","ama":"Hafner C, Ly M, Wojtan C. Spin-it faster: Quadrics solve all topology optimization problems that depend only on mass moments. <i>Transactions on Graphics</i>. 2024;43(4). doi:<a href=\"https://doi.org/10.1145/3658194\">10.1145/3658194</a>","short":"C. Hafner, M. Ly, C. Wojtan, Transactions on Graphics 43 (2024)."},"date_updated":"2025-09-08T08:29:09Z","day":"01","keyword":["Topology Optimization","Mass Moments","Computational Geometry"],"isi":1,"issue":"4","has_accepted_license":"1","quality_controlled":"1","oa_version":"Published Version","doi":"10.1145/3658194","acknowledgement":"We thank Gianmarco Cherchi for his help in tailoring the Mesh Booleans code for this project, Stefan Jeschke for his help with the photographs, Malina Strugaru and Aleksei Kalinov for their help with the samples, and the anonymous reviewers as well as the members of the ISTA Visual Computing Group for their feedback. This project was funded in part by the European Research Council (ERC Consolidator Grant 101045083 CoDiNA).","volume":43,"month":"07","project":[{"name":"Computational Discovery of Numerical Algorithms for Animation and Simulation of Natural Phenomena","_id":"34bc2376-11ca-11ed-8bc3-9a3b3961a088","grant_number":"101045083"}],"file":[{"creator":"chafner","date_updated":"2024-07-05T12:05:17Z","checksum":"0dc9f5a6422b8a49a79026900f349ee5","success":1,"content_type":"application/pdf","file_name":"sif-final.pdf","file_id":"17204","file_size":7225150,"access_level":"open_access","relation":"main_file","date_created":"2024-07-05T12:05:17Z"},{"checksum":"cde433c6a40688d5f1187fb5721f6f94","content_type":"application/pdf","creator":"chafner","date_updated":"2024-07-05T12:06:03Z","relation":"supplementary_material","date_created":"2024-07-05T12:06:03Z","file_id":"17205","file_name":"sif-supp-final.pdf","access_level":"open_access","file_size":397262},{"date_updated":"2024-07-17T09:29:13Z","creator":"chafner","content_type":"video/mp4","checksum":"c0457a09c2ab9a1c2935c995dcc84907","title":"Submission Video","file_name":"sif-video-final.mp4","file_id":"17276","file_size":170001305,"access_level":"open_access","date_created":"2024-07-17T09:29:13Z","relation":"supplementary_material"}],"article_number":"78","external_id":{"isi":["001289270900045"]},"scopus_import":"1","publisher":"Association for Computing Machinery","date_published":"2024-07-01T00:00:00Z","abstract":[{"text":"The behavior of a rigid body primarily depends on its mass moments, which consist of the mass, center of mass, and moments of inertia. It is possible to manipulate these quantities without altering the geometric appearance of an object by introducing cavities in its interior. Algorithms that find cavities of suitable shapes and sizes have enabled the computational design of spinning tops, yo-yos, wheels, buoys, and statically balanced objects. Previous work is based, for example, on topology optimization on voxel grids, which introduces a large number of optimization variables and box constraints, or offset surface computation, which cannot guarantee that solutions to a feasible problem will always be found.\r\n\r\nIn this work, we provide a mathematical analysis of constrained topology optimization problems that depend only on mass moments. This class of problems covers, among others, all applications mentioned above. Our main result is to show that no matter the outer shape of the rigid body to be optimized or the optimization objective and constraints considered, the optimal solution always features a quadric-shaped interface between material and cavities. This proves that optimal interfaces are always ellipsoids, hyperboloids, paraboloids, or one of a few degenerate cases, such as planes.\r\n\r\nThis insight lets us replace a difficult topology optimization problem with a provably equivalent non-linear equation system in a small number (<10) of variables, which represent the coefficients of the quadric. This system can be solved in a few seconds for most examples, provides insights into the geometric structure of many specific applications, and lets us describe their solution properties. Finally, our method integrates seamlessly into modern fabrication workflows because our solutions are analytical surfaces that are native to the CAD domain.","lang":"eng"}],"type":"journal_article","ddc":["516"],"file_date_updated":"2024-07-17T09:29:13Z","oa":1,"publication_status":"published","department":[{"_id":"ChWo"}],"publication_identifier":{"eissn":["1557-7368"],"issn":["0730-0301"]},"author":[{"full_name":"Hafner, Christian","last_name":"Hafner","id":"400429CC-F248-11E8-B48F-1D18A9856A87","first_name":"Christian"},{"id":"6340d7f0-b48d-11eb-b10d-b7487e71d9f1","first_name":"Mickaël","full_name":"Ly, Mickaël","last_name":"Ly"},{"first_name":"Christopher J","id":"3C61F1D2-F248-11E8-B48F-1D18A9856A87","last_name":"Wojtan","orcid":"0000-0001-6646-5546","full_name":"Wojtan, Christopher J"}],"status":"public","date_created":"2024-07-05T12:08:57Z","article_processing_charge":"Yes (via OA deal)","publication":"Transactions on Graphics","title":"Spin-it faster: Quadrics solve all topology optimization problems that depend only on mass moments","language":[{"iso":"eng"}],"corr_author":"1","conference":{"location":"Denver, Colorado","end_date":"2024-08-01","start_date":"2024-07-28"}},{"year":"2024","article_type":"letter_note","intvolume":"        37","_id":"17207","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"day":"28","date_updated":"2025-09-08T08:08:00Z","isi":1,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","citation":{"apa":"Fouqueau, L., &#38; Polechova, J. (2024). Eco-evolutionary dynamics in changing environments: Integrating theory with data. <i>Journal of Evolutionary Biology</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/jeb/voae067\">https://doi.org/10.1093/jeb/voae067</a>","mla":"Fouqueau, Louise, and Jitka Polechova. “Eco-Evolutionary Dynamics in Changing Environments: Integrating Theory with Data.” <i>Journal of Evolutionary Biology</i>, vol. 37, no. 6, Oxford University Press, 2024, pp. 579–87, doi:<a href=\"https://doi.org/10.1093/jeb/voae067\">10.1093/jeb/voae067</a>.","ama":"Fouqueau L, Polechova J. Eco-evolutionary dynamics in changing environments: Integrating theory with data. <i>Journal of evolutionary biology</i>. 2024;37(6):579-587. doi:<a href=\"https://doi.org/10.1093/jeb/voae067\">10.1093/jeb/voae067</a>","ieee":"L. Fouqueau and J. Polechova, “Eco-evolutionary dynamics in changing environments: Integrating theory with data,” <i>Journal of evolutionary biology</i>, vol. 37, no. 6. Oxford University Press, pp. 579–587, 2024.","chicago":"Fouqueau, Louise, and Jitka Polechova. “Eco-Evolutionary Dynamics in Changing Environments: Integrating Theory with Data.” <i>Journal of Evolutionary Biology</i>. Oxford University Press, 2024. <a href=\"https://doi.org/10.1093/jeb/voae067\">https://doi.org/10.1093/jeb/voae067</a>.","ista":"Fouqueau L, Polechova J. 2024. Eco-evolutionary dynamics in changing environments: Integrating theory with data. Journal of evolutionary biology. 37(6), 579–587.","short":"L. Fouqueau, J. Polechova, Journal of Evolutionary Biology 37 (2024) 579–587."},"quality_controlled":"1","oa_version":"Published Version","doi":"10.1093/jeb/voae067","issue":"6","volume":37,"month":"06","acknowledgement":"This research was funded by the Austrian Science Fund (FWF), project doi: 10.55776/P32896, Institutional Identifier: 501100002428, grant number: P32896 and L.F. acknowledges the support of the NOMIS-ISTA Fellowship Program.\r\nWe would like to thank Nick Barton, Roger Butlin, Stuart Baird, Patrik Nosil, and Jason Sexton for their insightful comments on the earlier drafts, and to John Carchrae for his valuable contribution in refining phrasing and enhancing clarity. For open access purposes, the author has applied a CC BY public copyright license to any author-accepted manuscript version arising from this submission.","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1093/jeb/voae067"}],"external_id":{"isi":["001258359900001"],"pmid":["38941551"]},"project":[{"name":"Causes and consequences of population fragmentation","_id":"c08d3278-5a5b-11eb-8a69-fdb09b55f4b8","grant_number":"P32896"},{"_id":"9B861AAC-BA93-11EA-9121-9846C619BF3A","name":"NOMIS Fellowship Program"}],"oa":1,"publication_status":"published","publication_identifier":{"eissn":["1420-9101"]},"department":[{"_id":"NiBa"}],"author":[{"id":"1676e173-8143-11ed-8927-fe165216a93f","first_name":"Louise","full_name":"Fouqueau, Louise","orcid":"0000-0003-0371-9339","last_name":"Fouqueau"},{"full_name":"Polechova, Jitka","orcid":"0000-0003-0951-3112","last_name":"Polechova","id":"3BBFB084-F248-11E8-B48F-1D18A9856A87","first_name":"Jitka"}],"publisher":"Oxford University Press","scopus_import":"1","date_published":"2024-06-28T00:00:00Z","type":"journal_article","publication":"Journal of evolutionary biology","title":"Eco-evolutionary dynamics in changing environments: Integrating theory with data","page":"579-587","status":"public","pmid":1,"article_processing_charge":"No","date_created":"2024-07-07T22:01:04Z","language":[{"iso":"eng"}]},{"file":[{"relation":"source_file","date_created":"2024-07-09T09:21:44Z","access_level":"closed","file_size":"14218691","file_name":"Raimel_Thesis-Final.zip","file_id":"17212","checksum":"6f45273d04f4418bc2adc018baed0525","content_type":"application/zip","creator":"rmedinar","date_updated":"2024-07-10T11:34:09Z"},{"success":1,"checksum":"6724a95bec772dbabc0111b9f08a805e","content_type":"application/pdf","creator":"rmedinar","date_updated":"2024-07-17T09:23:24Z","relation":"main_file","date_created":"2024-07-17T09:23:24Z","access_level":"open_access","file_size":11253627,"file_name":"Raimel_Thesis-20_pdfa.pdf","file_id":"17275"}],"project":[{"call_identifier":"H2020","name":"Non-Ergodic Quantum Matter: Universality, Dynamics and Control","_id":"23841C26-32DE-11EA-91FC-C7463DDC885E","grant_number":"850899"}],"author":[{"orcid":"0000-0002-5383-2869","last_name":"Medina Ramos","full_name":"Medina Ramos, Raimel A","id":"CE680B90-D85A-11E9-B684-C920E6697425","first_name":"Raimel A"}],"publication_identifier":{"issn":["2663-337X"]},"publication_status":"published","department":[{"_id":"GradSch"},{"_id":"MaSe"}],"oa":1,"acknowledged_ssus":[{"_id":"ScienComp"}],"file_date_updated":"2024-07-17T09:23:24Z","related_material":{"record":[{"id":"10545","relation":"part_of_dissertation","status":"public"},{"relation":"part_of_dissertation","status":"public","id":"10067"},{"relation":"part_of_dissertation","status":"public","id":"17222"},{"relation":"part_of_dissertation","status":"public","id":"13125"},{"id":"11471","status":"public","relation":"part_of_dissertation"}]},"ddc":["539"],"abstract":[{"lang":"eng","text":"Can current quantum computers provide a speedup over their classical counterparts for some kinds of problems? In this thesis, with a focus on ground state search/preparation, we address some of the challenges that both quantum annealing and variational quantum algorithms suffer from, hindering any possible practical speedup in comparison to the best classical counterparts. \r\n\r\nIn the first part of the thesis, we study the performance of quantum annealing for solving a particular combinatorial optimization problem called 3-XOR satisfability (3-XORSAT). The classical problem is mapped into a ground state search of a 3-local classical Hamiltonian $H_C$. We consider how modifying the initial problem, by adding more interaction terms to the corresponding Hamiltonian, leads to the emergence of a first-order phase transition during the annealing process. This phenomenon causes the total annealing duration, $T$, required to prepare the ground state of $H_C$ with a high probability to increase exponentially with the size of the problem. Our findings indicate that with the growing complexity of problem instances, the likelihood of encountering first-order phase transitions also increases, making quantum annealing an impractical solution for these types of combinatorial optimization problems.\r\n\r\nIn the second part, we focus on the problem of barren plateaus in generic variational quantum algorithms. Barren plateaus correspond to flat regions in the parameter space where the gradient of the cost function is zero in expectation, and with the variance decaying exponentially with the system size, thus obstructing an efficient parameter optimization.  We propose an algorithm to circumvent Barren Plateaus by monitoring the entanglement entropy of k-local reduced density matrices, alongside a method for estimating entanglement entropy via classical shadow tomography. We illustrate the approach with the paradigmatic example of the variational quantum eigensolver, and show that our algorithm effectively avoids barren plateaus in the initialization as well as during the optimization stage. \r\n\r\nLastly, in the last two Chapters of this thesis, we focus on the quantum approximate optimization algorithm (QAOA), originally introduced as an algorithm for solving generic combinatorial optimization problems in near-term quantum devices. Specifically, we focus on how to develop rigorous initialization strategies with guarantee improvement. Our motivation for this study lies in that for random initialization, the optimization typically leads to local minima with poor performance. Our main result corresponds to the analytical construction of index-1 saddle points or transition states, stationary points with a single direction of descent, as a tool for systematically exploring the QAOA optimization landscape. This leads us to propose a novel greedy parameter initialization strategy that guarantees for the energy to decrease with an increasing number of circuit layers. Furthermore, with precise estimates for the negative Hessian eigenvalue and its eigenvector, we establish a lower bound for energy improvement following a QAOA iteration."}],"type":"dissertation","date_published":"2024-07-09T00:00:00Z","publisher":"Institute of Science and Technology Austria","title":"Exploring the optimization landscape of variational quantum algorithms","alternative_title":["ISTA Thesis"],"article_processing_charge":"No","date_created":"2024-07-09T09:14:24Z","status":"public","page":"133","degree_awarded":"PhD","corr_author":"1","language":[{"iso":"eng"}],"ec_funded":1,"year":"2024","_id":"17208","keyword":["Quantum computing","Variational Quantum Algorithms","Optimization"],"day":"09","date_updated":"2025-04-15T07:40:36Z","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","citation":{"short":"R.A. Medina Ramos, Exploring the Optimization Landscape of Variational Quantum Algorithms, Institute of Science and Technology Austria, 2024.","chicago":"Medina Ramos, Raimel A. “Exploring the Optimization Landscape of Variational Quantum Algorithms.” Institute of Science and Technology Austria, 2024. <a href=\"https://doi.org/10.15479/at:ista:17208\">https://doi.org/10.15479/at:ista:17208</a>.","ista":"Medina Ramos RA. 2024. Exploring the optimization landscape of variational quantum algorithms. Institute of Science and Technology Austria.","ama":"Medina Ramos RA. Exploring the optimization landscape of variational quantum algorithms. 2024. doi:<a href=\"https://doi.org/10.15479/at:ista:17208\">10.15479/at:ista:17208</a>","ieee":"R. A. Medina Ramos, “Exploring the optimization landscape of variational quantum algorithms,” Institute of Science and Technology Austria, 2024.","mla":"Medina Ramos, Raimel A. <i>Exploring the Optimization Landscape of Variational Quantum Algorithms</i>. Institute of Science and Technology Austria, 2024, doi:<a href=\"https://doi.org/10.15479/at:ista:17208\">10.15479/at:ista:17208</a>.","apa":"Medina Ramos, R. A. (2024). <i>Exploring the optimization landscape of variational quantum algorithms</i>. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/at:ista:17208\">https://doi.org/10.15479/at:ista:17208</a>"},"doi":"10.15479/at:ista:17208","oa_version":"Published Version","has_accepted_license":"1","supervisor":[{"last_name":"Serbyn","orcid":"0000-0002-2399-5827","full_name":"Serbyn, Maksym","id":"47809E7E-F248-11E8-B48F-1D18A9856A87","first_name":"Maksym"}],"month":"07"},{"title":"Primal-dual non-smooth friction for rigid body animation","publication":"Special Interest Group on Computer Graphics and Interactive Techniques Conference Conference Papers '24","date_created":"2024-07-10T11:06:20Z","article_processing_charge":"Yes (via OA deal)","status":"public","conference":{"location":"Denver, United States","end_date":"2024-08-01","start_date":"2024-07-28","name":"SIGGRAPH: Computer Graphics and Interactive Techniques Conference"},"language":[{"iso":"eng"}],"corr_author":"1","external_id":{"isi":["001282218200091"]},"file":[{"file_id":"17215","file_name":"sig24_friction_authors.pdf","access_level":"open_access","file_size":47309472,"relation":"main_file","date_created":"2024-07-10T11:03:14Z","creator":"yichen","date_updated":"2024-07-10T11:03:14Z","checksum":"b8b203ed09e3995ba0d7e6a76288663a","success":1,"content_type":"application/pdf"},{"date_created":"2024-07-10T11:03:12Z","relation":"main_file","file_id":"17216","file_name":"sig24_friction_supplementary.pdf","file_size":10518286,"access_level":"open_access","content_type":"application/pdf","checksum":"89d81b397b4b6469d828808a68b70820","success":1,"date_updated":"2024-07-10T11:03:12Z","creator":"yichen"},{"checksum":"7123deed34a5456810e7b5336a31c657","success":1,"content_type":"video/mp4","creator":"yichen","date_updated":"2024-07-10T11:03:51Z","relation":"main_file","date_created":"2024-07-10T11:03:51Z","file_size":71789192,"access_level":"open_access","file_name":"friction_paper_extra_video_finished.mp4","file_id":"17217"},{"file_name":"friction_paper_video_finished.mp4","file_id":"17218","access_level":"open_access","file_size":280610763,"date_created":"2024-07-10T11:03:58Z","relation":"main_file","date_updated":"2024-07-10T11:03:58Z","creator":"yichen","content_type":"video/mp4","success":1,"checksum":"e606fc1ae8f2610ce3b4421566800b45"}],"project":[{"grant_number":"101045083","_id":"34bc2376-11ca-11ed-8bc3-9a3b3961a088","name":"Computational Discovery of Numerical Algorithms for Animation and Simulation of Natural Phenomena"}],"author":[{"first_name":"Yi-Lu","id":"0b467602-dbcd-11ea-9d1d-ed480aa46b70","full_name":"Chen, Yi-Lu","last_name":"Chen"},{"first_name":"Mickaël","id":"6340d7f0-b48d-11eb-b10d-b7487e71d9f1","full_name":"Ly, Mickaël","last_name":"Ly"},{"id":"3C61F1D2-F248-11E8-B48F-1D18A9856A87","first_name":"Christopher J","full_name":"Wojtan, Christopher J","last_name":"Wojtan","orcid":"0000-0001-6646-5546"}],"publication_identifier":{"isbn":["9798400705250"]},"department":[{"_id":"GradSch"},{"_id":"ChWo"}],"publication_status":"published","oa":1,"file_date_updated":"2024-07-10T11:03:58Z","ddc":["621","531","006"],"date_published":"2024-07-01T00:00:00Z","abstract":[{"text":"Current numerical algorithms for simulating friction fall in one of two camps: smooth solvers sacrifice the stable treatment of static friction in exchange for fast convergence, and non-smooth solvers accurately compute friction at convergence rates that are often prohibitive for large graphics applications. We introduce a novel bridge between these two ideas that computes static and dynamic friction stably and efficiently. Our key idea is to convert the highly constrained non-smooth problem into an unconstrained smooth problem using logarithmic barriers that converges to the exact solution as accuracy increases. We phrase the problem as an interior point primal-dual problem that can be solved efficiently with Newton iteration. We observe quadratic convergence despite the non-smooth nature of the original problem, and our method is well-suited for large systems of tightly packed objects with many contact points. We demonstrate the efficacy of our method with stable piles of grains and stacks of objects, complex granular flows, and robust interlocking assemblies of rigid bodies.","lang":"eng"}],"type":"conference","scopus_import":"1","publisher":"Association for Computing Machinery","doi":"10.1145/3641519.3657485","oa_version":"Published Version","quality_controlled":"1","has_accepted_license":"1","month":"07","acknowledgement":"We thank Vincent Acary for his help with Siconos, as well as the anonymous reviewers and the members of the Visual Computing Group at ISTA for their helpful comments. This research was funded in part by the European Union (ERC-2021-COG 101045083 CoDiNA).","year":"2024","_id":"17214","keyword":["physical simulation","frictional contact","rigid body mechanics","non-smooth dynamics"],"isi":1,"day":"01","date_updated":"2025-09-08T08:54:38Z","citation":{"mla":"Chen, Yi-Lu, et al. “Primal-Dual Non-Smooth Friction for Rigid Body Animation.” <i>Special Interest Group on Computer Graphics and Interactive Techniques Conference Conference Papers ’24</i>, Association for Computing Machinery, 2024, doi:<a href=\"https://doi.org/10.1145/3641519.3657485\">10.1145/3641519.3657485</a>.","apa":"Chen, Y.-L., Ly, M., &#38; Wojtan, C. (2024). Primal-dual non-smooth friction for rigid body animation. In <i>Special Interest Group on Computer Graphics and Interactive Techniques Conference Conference Papers ’24</i>. Denver, United States: Association for Computing Machinery. <a href=\"https://doi.org/10.1145/3641519.3657485\">https://doi.org/10.1145/3641519.3657485</a>","short":"Y.-L. Chen, M. Ly, C. Wojtan, in:, Special Interest Group on Computer Graphics and Interactive Techniques Conference Conference Papers ’24, Association for Computing Machinery, 2024.","chicago":"Chen, Yi-Lu, Mickaël Ly, and Chris Wojtan. “Primal-Dual Non-Smooth Friction for Rigid Body Animation.” In <i>Special Interest Group on Computer Graphics and Interactive Techniques Conference Conference Papers ’24</i>. Association for Computing Machinery, 2024. <a href=\"https://doi.org/10.1145/3641519.3657485\">https://doi.org/10.1145/3641519.3657485</a>.","ama":"Chen Y-L, Ly M, Wojtan C. Primal-dual non-smooth friction for rigid body animation. In: <i>Special Interest Group on Computer Graphics and Interactive Techniques Conference Conference Papers ’24</i>. Association for Computing Machinery; 2024. doi:<a href=\"https://doi.org/10.1145/3641519.3657485\">10.1145/3641519.3657485</a>","ista":"Chen Y-L, Ly M, Wojtan C. 2024. Primal-dual non-smooth friction for rigid body animation. Special Interest Group on Computer Graphics and Interactive Techniques Conference Conference Papers ’24. SIGGRAPH: Computer Graphics and Interactive Techniques Conference.","ieee":"Y.-L. Chen, M. Ly, and C. Wojtan, “Primal-dual non-smooth friction for rigid body animation,” in <i>Special Interest Group on Computer Graphics and Interactive Techniques Conference Conference Papers ’24</i>, Denver, United States, 2024."},"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345"},{"status":"public","article_processing_charge":"Yes (via OA deal)","date_created":"2024-07-10T12:24:00Z","publication":"ACM Transactions on Graphics","title":"Multi-material mesh-based surface tracking with implicit topology changes","language":[{"iso":"eng"}],"corr_author":"1","OA_place":"publisher","project":[{"grant_number":"101045083","name":"Computational Discovery of Numerical Algorithms for Animation and Simulation of Natural Phenomena","_id":"34bc2376-11ca-11ed-8bc3-9a3b3961a088"}],"file":[{"creator":"dernst","date_updated":"2024-07-23T06:35:15Z","success":1,"checksum":"1917067d4b52d7729019b03560004e43","content_type":"application/pdf","file_id":"17317","file_name":"2024_ACMToG_HeissSynak.pdf","access_level":"open_access","file_size":48763368,"relation":"main_file","date_created":"2024-07-23T06:35:15Z"},{"relation":"main_file","date_created":"2024-07-10T12:23:44Z","file_name":"sdtopofixer_final.mp4","file_id":"17221","file_size":48021463,"access_level":"open_access","checksum":"a4f0e293184bfa034c0c585848806b17","success":1,"content_type":"video/mp4","creator":"akalinov","date_updated":"2024-07-10T12:23:44Z"},{"date_updated":"2025-11-11T09:50:52Z","creator":"akalinov","content_type":"application/pdf","checksum":"18fc310a78ec91651148c45a8b89fa44","title":"Authors' version of the text","access_level":"open_access","file_size":48639581,"file_id":"20633","file_name":"SuperDuperTopoFixer.pdf","date_created":"2025-11-11T09:50:52Z","relation":"preprint"}],"article_number":"54","external_id":{"isi":["001289270900021"]},"scopus_import":"1","publisher":"Association for Computing Machinery","date_published":"2024-07-01T00:00:00Z","abstract":[{"lang":"eng","text":"We introduce a multi-material non-manifold mesh-based surface tracking algorithm that converts self-intersections into topological changes. Our algorithm generalizes prior work on manifold surface tracking with topological changes: it preserves surface features like mesh-based methods, and it robustly handles topological changes like level set methods. Our method also offers improved efficiency and robustness over the state of the art. We demonstrate the effectiveness of the approach on a range of examples, including complex soap film simulations with thousands of interacting bubbles, and boolean unions of non-manifold meshes consisting of millions of triangles."}],"type":"journal_article","ddc":["004"],"OA_type":"hybrid","oa":1,"related_material":{"record":[{"relation":"dissertation_contains","status":"public","id":"18301"},{"id":"19630","status":"public","relation":"dissertation_contains"}]},"file_date_updated":"2025-11-11T09:50:52Z","publication_identifier":{"issn":["0730-0301"],"eissn":["1557-7368"]},"department":[{"_id":"GradSch"},{"_id":"ChWo"}],"publication_status":"published","author":[{"id":"331776E2-F248-11E8-B48F-1D18A9856A87","first_name":"Peter","full_name":"Synak, Peter","last_name":"Synak"},{"full_name":"Kalinov, Aleksei","orcid":"0000-0003-2189-3904","last_name":"Kalinov","id":"44b7120e-eb97-11eb-a6c2-e1557aa81d02","first_name":"Aleksei"},{"last_name":"Strugaru","full_name":"Strugaru, Irina-Malina","first_name":"Irina-Malina","id":"2afc607f-f128-11eb-9611-8f2a0dfcf074"},{"id":"36cea3aa-f38e-11ec-8ae0-c65ae6f6098f","first_name":"Arian","last_name":"Etemadihaghighi","full_name":"Etemadihaghighi, Arian"},{"last_name":"Yang","full_name":"Yang, Huidong","first_name":"Huidong"},{"first_name":"Christopher J","id":"3C61F1D2-F248-11E8-B48F-1D18A9856A87","full_name":"Wojtan, Christopher J","orcid":"0000-0001-6646-5546","last_name":"Wojtan"}],"issue":"4","has_accepted_license":"1","quality_controlled":"1","oa_version":"Published Version","doi":"10.1145/3658223","acknowledgement":"Peter Heiss-Synak helped conceive the project, helped formulate the algorithm structure, contributed ideas and code to Sections 6 & 8, the mesh data structure, algorithm robustness and benchmarks, helped write the paper, and provided supervision and conceptual solutions throughout the project. Aleksei Kalinov contributed ideas and code to Sections 7, 8.5, and 5, the sparse grid data structure, algorithm robustness and benchmarks, optimized the performance, produced all results, most figures, and the supplementary video, helped write the text, and provided conceptual solutions throughout the project. Malina Strugaru helped implement the mesh data structure and designed re-meshing operations for non-manifold triangle meshes. Arian Etemadi developed early prototypes for ideas in Sections 8.1 and 8.3 and helped write the paper. Huidong Yang developed early prototypes for isosurface extraction and visualization. Chris Wojtan helped conceive the project, helped write the paper, and provided supervision, prototype grid data structure code, and conceptual solutions throughout the project. We thank the anonymous reviewers for their helpful comments, the members of the Visual Computing Group at ISTA for their feedback, Christopher Batty for discussions about LosTopos, and SideFX for the Houdini Education software licenses.  This research was funded in part by the European Union (ERC-2021-COG 101045083 CoDiNA).","volume":43,"month":"07","intvolume":"        43","_id":"17219","license":"https://creativecommons.org/licenses/by-nc-sa/4.0/","article_type":"original","year":"2024","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"mla":"Synak, Peter, et al. “Multi-Material Mesh-Based Surface Tracking with Implicit Topology Changes.” <i>ACM Transactions on Graphics</i>, vol. 43, no. 4, 54, Association for Computing Machinery, 2024, doi:<a href=\"https://doi.org/10.1145/3658223\">10.1145/3658223</a>.","apa":"Synak, P., Kalinov, A., Strugaru, I.-M., Etemadi, A., Yang, H., &#38; Wojtan, C. (2024). Multi-material mesh-based surface tracking with implicit topology changes. <i>ACM Transactions on Graphics</i>. Association for Computing Machinery. <a href=\"https://doi.org/10.1145/3658223\">https://doi.org/10.1145/3658223</a>","short":"P. Synak, A. Kalinov, I.-M. Strugaru, A. Etemadi, H. Yang, C. Wojtan, ACM Transactions on Graphics 43 (2024).","ama":"Synak P, Kalinov A, Strugaru I-M, Etemadi A, Yang H, Wojtan C. Multi-material mesh-based surface tracking with implicit topology changes. <i>ACM Transactions on Graphics</i>. 2024;43(4). doi:<a href=\"https://doi.org/10.1145/3658223\">10.1145/3658223</a>","ieee":"P. Synak, A. Kalinov, I.-M. Strugaru, A. Etemadi, H. Yang, and C. Wojtan, “Multi-material mesh-based surface tracking with implicit topology changes,” <i>ACM Transactions on Graphics</i>, vol. 43, no. 4. Association for Computing Machinery, 2024.","chicago":"Synak, Peter, Aleksei Kalinov, Irina-Malina Strugaru, Arian Etemadi, Huidong Yang, and Chris Wojtan. “Multi-Material Mesh-Based Surface Tracking with Implicit Topology Changes.” <i>ACM Transactions on Graphics</i>. Association for Computing Machinery, 2024. <a href=\"https://doi.org/10.1145/3658223\">https://doi.org/10.1145/3658223</a>.","ista":"Synak P, Kalinov A, Strugaru I-M, Etemadi A, Yang H, Wojtan C. 2024. Multi-material mesh-based surface tracking with implicit topology changes. ACM Transactions on Graphics. 43(4), 54."},"tmp":{"name":"Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)","short":"CC BY-NC-SA (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode","image":"/images/cc_by_nc_sa.png"},"date_updated":"2026-01-16T09:14:23Z","day":"01","isi":1,"keyword":["surface tracking","topology change","non- manifold meshes","multi-material flows","solid modeling"]},{"_id":"17222","main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2405.10125","open_access":"1"}],"year":"2024","external_id":{"arxiv":["2405.10125"]},"article_number":"2405.10125","type":"preprint","abstract":[{"lang":"eng","text":"The quantum approximate optimization algorithm (QAOA) uses a quantum computer\r\nto implement a variational method with $2p$ layers of alternating unitary\r\noperators, optimized by a classical computer to minimize a cost function. While\r\nrigorous performance guarantees exist for the QAOA at small depths $p$, the\r\nbehavior at large depths remains less clear, though simulations suggest\r\nexponentially fast convergence for certain problems. In this work, we gain\r\ninsights into the deep QAOA using an analytic expansion of the cost function\r\naround transition states. Transition states are constructed in a recursive\r\nmanner: from the local minima of the QAOA with $p$ layers we obtain transition\r\nstates of the QAOA with $p+1$ layers, which are stationary points characterized\r\nby a unique direction of negative curvature. We construct an analytic estimate\r\nof the negative curvature and the corresponding direction in parameter space at\r\neach transition state. The expansion of the QAOA cost function along the\r\nnegative direction to the quartic order gives a lower bound of the QAOA cost\r\nfunction improvement. We provide physical intuition behind the analytic\r\nexpressions for the local curvature and quartic expansion coefficient. Our\r\nnumerical study confirms the accuracy of our approximations and reveals that\r\nthe obtained bound and the true value of the QAOA cost function gain have a\r\ncharacteristic exponential decrease with the number of layers $p$, with the\r\nbound decreasing more rapidly. Our study establishes an analytical method for\r\nrecursively studying the QAOA that is applicable in the regime of high circuit\r\ndepth."}],"date_published":"2024-05-16T00:00:00Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"short":"R.A. Medina Ramos, M. Serbyn, ArXiv (n.d.).","chicago":"Medina Ramos, Raimel A, and Maksym Serbyn. “A Recursive Lower Bound on the Energy Improvement of the Quantum Approximate Optimization Algorithm.” <i>ArXiv</i>, n.d. <a href=\"https://doi.org/10.48550/arXiv.2405.10125\">https://doi.org/10.48550/arXiv.2405.10125</a>.","ista":"Medina Ramos RA, Serbyn M. A recursive lower bound on the energy improvement of the quantum approximate optimization algorithm. arXiv, 2405.10125.","ieee":"R. A. Medina Ramos and M. Serbyn, “A recursive lower bound on the energy improvement of the quantum approximate optimization algorithm,” <i>arXiv</i>. .","ama":"Medina Ramos RA, Serbyn M. A recursive lower bound on the energy improvement of the quantum approximate optimization algorithm. <i>arXiv</i>. doi:<a href=\"https://doi.org/10.48550/arXiv.2405.10125\">10.48550/arXiv.2405.10125</a>","mla":"Medina Ramos, Raimel A., and Maksym Serbyn. “A Recursive Lower Bound on the Energy Improvement of the Quantum Approximate Optimization Algorithm.” <i>ArXiv</i>, 2405.10125, doi:<a href=\"https://doi.org/10.48550/arXiv.2405.10125\">10.48550/arXiv.2405.10125</a>.","apa":"Medina Ramos, R. A., &#38; Serbyn, M. (n.d.). A recursive lower bound on the energy improvement of the quantum approximate optimization algorithm. <i>arXiv</i>. <a href=\"https://doi.org/10.48550/arXiv.2405.10125\">https://doi.org/10.48550/arXiv.2405.10125</a>"},"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"department":[{"_id":"MaSe"}],"publication_status":"draft","oa":1,"related_material":{"record":[{"id":"17208","relation":"dissertation_contains","status":"public"}]},"author":[{"orcid":"0000-0002-5383-2869","last_name":"Medina Ramos","full_name":"Medina Ramos, Raimel A","id":"CE680B90-D85A-11E9-B684-C920E6697425","first_name":"Raimel A"},{"full_name":"Serbyn, Maksym","orcid":"0000-0002-2399-5827","last_name":"Serbyn","id":"47809E7E-F248-11E8-B48F-1D18A9856A87","first_name":"Maksym"}],"day":"16","date_updated":"2025-04-15T07:40:35Z","article_processing_charge":"No","date_created":"2024-07-10T13:12:09Z","status":"public","oa_version":"Preprint","publication":"arXiv","doi":"10.48550/arXiv.2405.10125","title":"A recursive lower bound on the energy improvement of the quantum approximate optimization algorithm","corr_author":"1","language":[{"iso":"eng"}],"arxiv":1,"OA_place":"repository","month":"05"},{"corr_author":"1","language":[{"iso":"eng"}],"degree_awarded":"PhD","title":"Towards a quantum entanglement enhanced atom interferomter","alternative_title":["ISTA Thesis"],"page":"79","article_processing_charge":"No","date_created":"2024-07-11T09:46:48Z","status":"public","publication_identifier":{"issn":["2663-337X"]},"publication_status":"published","department":[{"_id":"GradSch"},{"_id":"OnHo"}],"file_date_updated":"2024-07-11T10:26:22Z","related_material":{"record":[{"relation":"part_of_dissertation","status":"public","id":"11438"}]},"oa":1,"author":[{"first_name":"Vyacheslav","id":"3A4FAA92-F248-11E8-B48F-1D18A9856A87","full_name":"Li, Vyacheslav","last_name":"Li"}],"date_published":"2024-07-11T00:00:00Z","abstract":[{"lang":"eng","text":"This thesis describes the development of an atom interferometer designed to exploit the\r\nadvantages of utilizing quantum entanglement for enhanced precision measurements beyond\r\nthe standard quantum limit. While the project remains ongoing, significant progress has been\r\nmade.\r\nA key contribution of this work is the development of Quantrol, an experimental control\r\nsystem leveraging the ARTIQ framework. This software enables precise timing and control\r\nwithout requiring prior knowledge of ARTIQ’s implementation details or coding experience.\r\nThe interface offers user friendly visual comprehension of the experimental sequence and\r\nextended capabilities, allowing researchers to scan variables with a simple click of a mouse.\r\nThe main proposed project is to implement atom interferometric sequence with squeezed input\r\nstates inside of a dipole trap generated by a high finesse cavity. The presence of the dipole\r\ntrap allows one dimensional atomic cloud split while maintaining relatively strong confinement\r\nin other directions.\r\nWe are currently able to trap and cool 87Rb atoms to few micro kelvin temperatures, load\r\nthem into the dipole trap and state prepare them to be used for squeezing and interferometric\r\nsequence."}],"type":"dissertation","publisher":"Institute of Science and Technology Austria","ddc":["530"],"file":[{"creator":"vli","date_updated":"2024-07-11T10:26:22Z","checksum":"15b2dbe8d2c9ed7ca5dd413827928077","success":1,"content_type":"application/pdf","file_size":6729761,"access_level":"open_access","file_name":"PhD_Thesis_Vyacheslav_Li_no_signatures_PDFA.pdf","file_id":"17228","relation":"main_file","date_created":"2024-07-11T10:26:22Z"},{"date_updated":"2024-07-11T10:26:22Z","creator":"vli","content_type":"application/x-zip-compressed","checksum":"16e904a11d8d0ebb167cb654ddfc7fe5","file_size":9542859,"access_level":"closed","file_id":"17229","file_name":"PhD Thesis Vyacheslav Li.zip","date_created":"2024-07-11T10:26:22Z","relation":"source_file"}],"project":[{"grant_number":"101087907","_id":"bdb2a702-d553-11ed-ba76-f12e3e5a3bc6","name":"A quantum hybrid of atoms and milligram-scale pendulums: towards gravitational quantum mechanics"}],"month":"07","oa_version":"Published Version","doi":"10.15479/at:ista:17225","supervisor":[{"full_name":"Hosten, Onur","orcid":"0000-0002-2031-204X","last_name":"Hosten","id":"4C02D85E-F248-11E8-B48F-1D18A9856A87","first_name":"Onur"}],"has_accepted_license":"1","tmp":{"name":"Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)","short":"CC BY-NC-SA (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode","image":"/images/cc_by_nc_sa.png"},"day":"11","date_updated":"2025-04-14T08:05:44Z","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","citation":{"mla":"Li, Vyacheslav. <i>Towards a Quantum Entanglement Enhanced Atom Interferomter</i>. Institute of Science and Technology Austria, 2024, doi:<a href=\"https://doi.org/10.15479/at:ista:17225\">10.15479/at:ista:17225</a>.","apa":"Li, V. (2024). <i>Towards a quantum entanglement enhanced atom interferomter</i>. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/at:ista:17225\">https://doi.org/10.15479/at:ista:17225</a>","short":"V. Li, Towards a Quantum Entanglement Enhanced Atom Interferomter, Institute of Science and Technology Austria, 2024.","ista":"Li V. 2024. Towards a quantum entanglement enhanced atom interferomter. Institute of Science and Technology Austria.","ieee":"V. Li, “Towards a quantum entanglement enhanced atom interferomter,” Institute of Science and Technology Austria, 2024.","ama":"Li V. Towards a quantum entanglement enhanced atom interferomter. 2024. doi:<a href=\"https://doi.org/10.15479/at:ista:17225\">10.15479/at:ista:17225</a>","chicago":"Li, Vyacheslav. “Towards a Quantum Entanglement Enhanced Atom Interferomter.” Institute of Science and Technology Austria, 2024. <a href=\"https://doi.org/10.15479/at:ista:17225\">https://doi.org/10.15479/at:ista:17225</a>."},"year":"2024","_id":"17225"},{"language":[{"iso":"eng"}],"corr_author":"1","title":"Examples of projective billiards with open sets of periodic orbits","publication":"Discrete and Continuous Dynamical Systems- Series A","status":"public","article_processing_charge":"No","date_created":"2024-07-14T22:01:10Z","page":"3287-3301","author":[{"first_name":"Corentin","id":"06619f18-9070-11eb-847d-d1ee780bd88b","last_name":"Fiorebe","full_name":"Fiorebe, Corentin"}],"oa":1,"publication_identifier":{"eissn":["1553-5231"],"issn":["1078-0947"]},"department":[{"_id":"VaKa"}],"publication_status":"published","OA_type":"free access","publisher":"American Institute of Mathematical Sciences","scopus_import":"1","type":"journal_article","date_published":"2024-11-01T00:00:00Z","abstract":[{"text":"In the class of projective billiards, which contains the usual billiards, we exhibit counter-examples to Ivrii's conjecture, which states that in any planar billiard with smooth boundary the set of periodic orbits has zero measure. The counter-examples are polygons admitting a 2-parameters family of n-periodic orbits, with n being either 3 or any even integer greater than 4.","lang":"eng"}],"external_id":{"isi":["001230091000001"]},"main_file_link":[{"open_access":"1","url":"https://doi.org/10.3934/dcds.2024059"}],"month":"11","volume":44,"doi":"10.3934/dcds.2024059","quality_controlled":"1","oa_version":"Published Version","issue":"11","day":"01","date_updated":"2025-10-16T11:53:22Z","isi":1,"citation":{"mla":"Fiorebe, Corentin. “Examples of Projective Billiards with Open Sets of Periodic Orbits.” <i>Discrete and Continuous Dynamical Systems- Series A</i>, vol. 44, no. 11, American Institute of Mathematical Sciences, 2024, pp. 3287–301, doi:<a href=\"https://doi.org/10.3934/dcds.2024059\">10.3934/dcds.2024059</a>.","apa":"Fiorebe, C. (2024). Examples of projective billiards with open sets of periodic orbits. <i>Discrete and Continuous Dynamical Systems- Series A</i>. American Institute of Mathematical Sciences. <a href=\"https://doi.org/10.3934/dcds.2024059\">https://doi.org/10.3934/dcds.2024059</a>","short":"C. Fiorebe, Discrete and Continuous Dynamical Systems- Series A 44 (2024) 3287–3301.","chicago":"Fiorebe, Corentin. “Examples of Projective Billiards with Open Sets of Periodic Orbits.” <i>Discrete and Continuous Dynamical Systems- Series A</i>. American Institute of Mathematical Sciences, 2024. <a href=\"https://doi.org/10.3934/dcds.2024059\">https://doi.org/10.3934/dcds.2024059</a>.","ama":"Fiorebe C. Examples of projective billiards with open sets of periodic orbits. <i>Discrete and Continuous Dynamical Systems- Series A</i>. 2024;44(11):3287-3301. doi:<a href=\"https://doi.org/10.3934/dcds.2024059\">10.3934/dcds.2024059</a>","ieee":"C. Fiorebe, “Examples of projective billiards with open sets of periodic orbits,” <i>Discrete and Continuous Dynamical Systems- Series A</i>, vol. 44, no. 11. American Institute of Mathematical Sciences, pp. 3287–3301, 2024.","ista":"Fiorebe C. 2024. Examples of projective billiards with open sets of periodic orbits. Discrete and Continuous Dynamical Systems- Series A. 44(11), 3287–3301."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_type":"original","year":"2024","_id":"17231","intvolume":"        44"},{"project":[{"grant_number":"F7805","name":"Stem Cell Modulation in Neural Development and Regeneration/ P05-Molecular Mechanisms of Neural Stem Cell Lineage Progression","_id":"059F6AB4-7A3F-11EA-A408-12923DDC885E"}],"file":[{"checksum":"464f52ecc6ec92f509552823bb82bf79","success":1,"content_type":"application/pdf","creator":"dernst","date_updated":"2025-01-09T12:16:53Z","relation":"main_file","date_created":"2025-01-09T12:16:53Z","file_name":"2024_STARProtoc_Cheung2.pdf","file_id":"18810","access_level":"open_access","file_size":6445556}],"external_id":{"pmid":["38968076"]},"article_number":"103168","abstract":[{"lang":"eng","text":"The lineage relationship of clonally-related cells offers important insights into the ontogeny and cytoarchitecture of the brain in health and disease. Here, we provide a protocol to concurrently assess cell lineage relationship and cell-type identity among clonally-related cells in situ. We first describe the preparation and screening of acute brain slices containing clonally-related cells labeled using mosaic analysis with double markers (MADM). We then outline steps to collect RNA from individual cells for downstream applications and cell-type identification using RNA sequencing.\r\nFor complete details on the use and execution of this protocol, please refer to Cheung et al.\r\n1"}],"type":"journal_article","date_published":"2024-09-20T00:00:00Z","scopus_import":"1","publisher":"Elsevier","OA_type":"gold","ddc":["570"],"department":[{"_id":"SiHi"},{"_id":"PreCl"}],"publication_status":"published","publication_identifier":{"eissn":["2666-1667"]},"oa":1,"acknowledged_ssus":[{"_id":"Bio"},{"_id":"M-Shop"},{"_id":"PreCl"}],"file_date_updated":"2025-01-09T12:16:53Z","author":[{"full_name":"Cheung, Giselle T","last_name":"Cheung","orcid":"0000-0001-8457-2572","first_name":"Giselle T","id":"471195F6-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Florian","id":"48EA0138-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-7462-0048","last_name":"Pauler","full_name":"Pauler, Florian"},{"id":"3B8B25A8-F248-11E8-B48F-1D18A9856A87","first_name":"Peter","last_name":"Koppensteiner","orcid":"0000-0002-3509-1948","full_name":"Koppensteiner, Peter"},{"full_name":"Hippenmeyer, Simon","orcid":"0000-0003-2279-1061","last_name":"Hippenmeyer","first_name":"Simon","id":"37B36620-F248-11E8-B48F-1D18A9856A87"}],"article_processing_charge":"Yes","date_created":"2024-07-14T22:01:10Z","status":"public","pmid":1,"publication":"STAR Protocols","title":"Protocol for mapping cell lineage and cell-type identity of clonally-related cells in situ using MADM-CloneSeq","corr_author":"1","APC_amount":"804 EUR","language":[{"iso":"eng"}],"OA_place":"publisher","intvolume":"         5","license":"https://creativecommons.org/licenses/by-nc-nd/4.0/","_id":"17232","article_type":"original","year":"2024","citation":{"mla":"Cheung, Giselle T., et al. “Protocol for Mapping Cell Lineage and Cell-Type Identity of Clonally-Related Cells in Situ Using MADM-CloneSeq.” <i>STAR Protocols</i>, vol. 5, no. 3, 103168, Elsevier, 2024, doi:<a href=\"https://doi.org/10.1016/j.xpro.2024.103168\">10.1016/j.xpro.2024.103168</a>.","apa":"Cheung, G. T., Pauler, F., Koppensteiner, P., &#38; Hippenmeyer, S. (2024). Protocol for mapping cell lineage and cell-type identity of clonally-related cells in situ using MADM-CloneSeq. <i>STAR Protocols</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.xpro.2024.103168\">https://doi.org/10.1016/j.xpro.2024.103168</a>","short":"G.T. Cheung, F. Pauler, P. Koppensteiner, S. Hippenmeyer, STAR Protocols 5 (2024).","ista":"Cheung GT, Pauler F, Koppensteiner P, Hippenmeyer S. 2024. Protocol for mapping cell lineage and cell-type identity of clonally-related cells in situ using MADM-CloneSeq. STAR Protocols. 5(3), 103168.","ieee":"G. T. Cheung, F. Pauler, P. Koppensteiner, and S. Hippenmeyer, “Protocol for mapping cell lineage and cell-type identity of clonally-related cells in situ using MADM-CloneSeq,” <i>STAR Protocols</i>, vol. 5, no. 3. Elsevier, 2024.","chicago":"Cheung, Giselle T, Florian Pauler, Peter Koppensteiner, and Simon Hippenmeyer. “Protocol for Mapping Cell Lineage and Cell-Type Identity of Clonally-Related Cells in Situ Using MADM-CloneSeq.” <i>STAR Protocols</i>. Elsevier, 2024. <a href=\"https://doi.org/10.1016/j.xpro.2024.103168\">https://doi.org/10.1016/j.xpro.2024.103168</a>.","ama":"Cheung GT, Pauler F, Koppensteiner P, Hippenmeyer S. Protocol for mapping cell lineage and cell-type identity of clonally-related cells in situ using MADM-CloneSeq. <i>STAR Protocols</i>. 2024;5(3). doi:<a href=\"https://doi.org/10.1016/j.xpro.2024.103168\">10.1016/j.xpro.2024.103168</a>"},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","tmp":{"name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","short":"CC BY-NC-ND (4.0)","image":"/images/cc_by_nc_nd.png","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode"},"day":"20","date_updated":"2025-12-30T10:54:12Z","issue":"3","has_accepted_license":"1","oa_version":"Published Version","quality_controlled":"1","doi":"10.1016/j.xpro.2024.103168","acknowledgement":"We thank R. Beattie and T. Asenov for designing and producing components of the multi-well slice recover chamber. We thank R. Shigemoto for providing equipment access. We thank C. Streicher and A. Heger for mouse breeding support. This work was supported by the Scientific Service Units of IST Austria through resources provided by the Imaging & Optics, Miba Machine Shop, and Preclinical facilities. G.C. received funding from the European Commission (IST plus postdoctoral fellowship) and S.H. was funded by ISTA institutional funds and the Austrian Science Fund Special Research Programmes (FWF SFB-F78 Neuro Stem Modulation).","volume":5,"month":"09"},{"issue":"13","has_accepted_license":"1","quality_controlled":"1","oa_version":"Published Version","doi":"10.21769/BioProtoc.5029","acknowledgement":"This work was supported by the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation program (project 772103-BRIDGING to E.M.B.).","volume":14,"month":"07","intvolume":"        14","_id":"17233","year":"2024","article_type":"original","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"mla":"LI, ZIQIANG, et al. “Versatile Cloning Strategy for Efficient Multigene Editing in Arabidopsis.” <i>Bio-Protocol</i>, vol. 14, no. 13, e5029, Bio-Protocol, 2024, doi:<a href=\"https://doi.org/10.21769/BioProtoc.5029\">10.21769/BioProtoc.5029</a>.","apa":"LI, Z., Huard, J., Bayer, E. M., &#38; Wattelet-Boyer, V. (2024). Versatile cloning strategy for efficient multigene editing in Arabidopsis. <i>Bio-Protocol</i>. Bio-Protocol. <a href=\"https://doi.org/10.21769/BioProtoc.5029\">https://doi.org/10.21769/BioProtoc.5029</a>","short":"Z. LI, J. Huard, E.M. Bayer, V. Wattelet-Boyer, Bio-Protocol 14 (2024).","ieee":"Z. LI, J. Huard, E. M. Bayer, and V. Wattelet-Boyer, “Versatile cloning strategy for efficient multigene editing in Arabidopsis,” <i>Bio-protocol</i>, vol. 14, no. 13. Bio-Protocol, 2024.","ista":"LI Z, Huard J, Bayer EM, Wattelet-Boyer V. 2024. Versatile cloning strategy for efficient multigene editing in Arabidopsis. Bio-protocol. 14(13), e5029.","chicago":"LI, ZIQIANG, Jennifer Huard, Emmanuelle M. Bayer, and Valérie Wattelet-Boyer. “Versatile Cloning Strategy for Efficient Multigene Editing in Arabidopsis.” <i>Bio-Protocol</i>. Bio-Protocol, 2024. <a href=\"https://doi.org/10.21769/BioProtoc.5029\">https://doi.org/10.21769/BioProtoc.5029</a>.","ama":"LI Z, Huard J, Bayer EM, Wattelet-Boyer V. Versatile cloning strategy for efficient multigene editing in Arabidopsis. <i>Bio-protocol</i>. 2024;14(13). doi:<a href=\"https://doi.org/10.21769/BioProtoc.5029\">10.21769/BioProtoc.5029</a>"},"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"day":"05","date_updated":"2025-03-06T10:28:18Z","status":"public","pmid":1,"article_processing_charge":"Yes","date_created":"2024-07-14T22:01:11Z","publication":"Bio-protocol","title":"Versatile cloning strategy for efficient multigene editing in Arabidopsis","language":[{"iso":"eng"}],"file":[{"date_created":"2024-07-16T06:16:11Z","relation":"main_file","file_size":2896048,"access_level":"open_access","file_id":"17242","file_name":"2024_BioProtocol_Li.pdf","content_type":"application/pdf","checksum":"c8671c0ad483da6407cb16cc3fef1990","success":1,"date_updated":"2024-07-16T06:16:11Z","creator":"dernst"}],"article_number":"e5029","external_id":{"pmid":["39007160"]},"publisher":"Bio-Protocol","scopus_import":"1","type":"journal_article","date_published":"2024-07-05T00:00:00Z","abstract":[{"text":"CRISPR-Cas9 technology has become an essential tool for plant genome editing. Recent advancements have significantly improved the ability to target multiple genes simultaneously within the same genetic background through various strategies. Additionally, there has been significant progress in developing methods for inducible or tissue-specific editing. These advancements offer numerous possibilities for tailored genome modifications. Building upon existing research, we have developed an optimized and modular strategy allowing the targeting of several genes simultaneously in combination with the synchronized expression of the Cas9 endonuclease in the egg cell. This system allows significant editing efficiency while avoiding mosaicism. In addition, the versatile system we propose allows adaptation to inducible and/or tissue-specific edition according to the promoter chosen to drive the expression of the Cas9 gene. Here, we describe a step-by-step protocol for generating the binary vector necessary for establishing Arabidopsis edited lines using a versatile cloning strategy that combines Gateway® and Golden Gate technologies. We describe a versatile system that allows the cloning of as many guides as needed to target DNA, which can be multiplexed into a polycistronic gene and combined in the same construct with sequences for the expression of the Cas9 endonuclease. The expression of Cas9 is controlled by selecting from among a collection of promoters, including constitutive, inducible, ubiquitous, or tissue-specific promoters. Only one vector containing the polycistronic gene (tRNA-sgRNA) needs to be constructed. For that, sgRNA (composed of protospacers chosen to target the gene of interest and sgRNA scaffold) is cloned in tandem with the pre-tRNA sequence. Then, a single recombination reaction is required to assemble the promoter, the zCas9 coding sequence, and the tRNA-gRNA polycistronic gene. Each element is cloned in an entry vector and finally assembled according to the Multisite Gateway® Technology. Here, we detail the process to express zCas9 under the control of egg cell promoter fused to enhancer sequence (EC1.2en-EC1.1p) and to simultaneously target two multiple C2 domains and transmembrane region protein genes (MCTP3 and MCTP4, respectively at3g57880 and at1g51570), using one or two sgRNA per gene.","lang":"eng"}],"ddc":["570"],"oa":1,"file_date_updated":"2024-07-16T06:16:11Z","publication_identifier":{"eissn":["2331-8325"]},"department":[{"_id":"MiSi"}],"publication_status":"published","author":[{"first_name":"Ziqiang","id":"922e68bb-1727-11ee-857c-966e8cc1b6c3","full_name":"Li, Ziqiang","last_name":"Li"},{"first_name":"Jennifer","full_name":"Huard, Jennifer","last_name":"Huard"},{"full_name":"Bayer, Emmanuelle M.","last_name":"Bayer","first_name":"Emmanuelle M."},{"full_name":"Wattelet-Boyer, Valérie","last_name":"Wattelet-Boyer","first_name":"Valérie"}]},{"file":[{"date_created":"2024-07-16T06:24:29Z","relation":"main_file","access_level":"open_access","file_size":3273303,"file_id":"17243","file_name":"2024_AstrophysicalJourn_Wang.pdf","content_type":"application/pdf","success":1,"checksum":"bb1a6725586df12e745d091b5778bb2b","date_updated":"2024-07-16T06:24:29Z","creator":"dernst"}],"article_number":"L13","external_id":{"isi":["001257903200001"],"arxiv":["2405.01473"]},"file_date_updated":"2024-07-16T06:24:29Z","oa":1,"publication_identifier":{"eissn":["2041-8213"],"issn":["2041-8205"]},"publication_status":"published","department":[{"_id":"JoMa"}],"author":[{"first_name":"Bingjie","full_name":"Wang, Bingjie","last_name":"Wang"},{"full_name":"Leja, Joel","last_name":"Leja","first_name":"Joel"},{"first_name":"Anna","full_name":"De Graaff, Anna","last_name":"De Graaff"},{"first_name":"Gabriel B.","full_name":"Brammer, Gabriel B.","last_name":"Brammer"},{"first_name":"Andrea","last_name":"Weibel","full_name":"Weibel, Andrea"},{"first_name":"Pieter","full_name":"Van Dokkum, Pieter","last_name":"Van Dokkum"},{"first_name":"Josephine F.W.","last_name":"Baggen","full_name":"Baggen, Josephine F.W."},{"first_name":"Katherine A.","last_name":"Suess","full_name":"Suess, Katherine A."},{"first_name":"Jenny E.","full_name":"Greene, Jenny E.","last_name":"Greene"},{"last_name":"Bezanson","full_name":"Bezanson, Rachel","first_name":"Rachel"},{"last_name":"Cleri","full_name":"Cleri, Nikko J.","first_name":"Nikko J."},{"first_name":"Michaela","full_name":"Hirschmann, Michaela","last_name":"Hirschmann"},{"first_name":"Ivo","full_name":"Labbé, Ivo","last_name":"Labbé"},{"full_name":"Matthee, Jorryt J","orcid":"0000-0003-2871-127X","last_name":"Matthee","id":"7439a258-f3c0-11ec-9501-9df22fe06720","first_name":"Jorryt J"},{"first_name":"Ian","last_name":"Mcconachie","full_name":"Mcconachie, Ian"},{"first_name":"Rohan P.","full_name":"Naidu, Rohan P.","last_name":"Naidu"},{"full_name":"Nelson, Erica","last_name":"Nelson","first_name":"Erica"},{"first_name":"Pascal A.","last_name":"Oesch","full_name":"Oesch, Pascal A."},{"full_name":"Setton, David J.","last_name":"Setton","first_name":"David J."},{"first_name":"Christina C.","full_name":"Williams, Christina C.","last_name":"Williams"}],"scopus_import":"1","publisher":"IOP Publishing","type":"journal_article","date_published":"2024-07-01T00:00:00Z","abstract":[{"text":"The identification of red, apparently massive galaxies at z > 7 in early James Webb Space Telescope (JWST) photometry suggests a strongly accelerated time line compared to standard models of galaxy growth. A major uncertainty in the interpretation is whether the red colors are caused by evolved stellar populations, dust, or other effects such as emission lines or active galactic nuclei (AGNs). Here we show that three of the massive galaxy candidates at z = 6.7–8.4 have prominent Balmer breaks in JWST/NIRSpec spectroscopy from the RUBIES program. The Balmer breaks demonstrate unambiguously that stellar emission dominates at λrest = 0.4 μm and require formation histories extending hundreds of millions of years into the past in galaxies only 600–800 Myr after the big bang. Two of the three galaxies also show broad Balmer lines, with Hβ FWHM > 2500 km s−1, suggesting that dust-reddened AGNs contribute to, or even dominate, the spectral energy distributions of these galaxies at λrest ≳ 0.6 μm. All three galaxies have relatively narrow [O iii] lines, seemingly ruling out a high-mass interpretation if the lines arise in dynamically relaxed, inclined disks. Yet the inferred masses also remain highly uncertain. We model the high-quality spectra using Prospector to decompose the continuum into stellar and AGN components and explore limiting cases in stellar/AGN contribution. This produces a wide range of possible stellar masses, spanning M⋆ ∼ 109−1011M⊙. Nevertheless, all fits suggest a very early and rapid formation, most of which follow with a truncation in star formation. Potential origins and evolutionary tracks for these objects are discussed, from the cores of massive galaxies to low-mass galaxies with overmassive black holes. Intriguingly, we find all of these explanations to be incomplete; deeper and redder data are needed to understand the physics of these systems.","lang":"eng"}],"ddc":["520"],"publication":"Astrophysical Journal Letters","title":"RUBIES: Evolved stellar populations with extended formation histories at z ∼ 7-8 in candidate massive galaxies identified with JWST/NIRSpec","status":"public","DOAJ_listed":"1","date_created":"2024-07-14T22:01:11Z","article_processing_charge":"Yes","language":[{"iso":"eng"}],"arxiv":1,"article_type":"original","year":"2024","intvolume":"       969","_id":"17234","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"day":"01","date_updated":"2025-09-08T08:10:21Z","isi":1,"citation":{"short":"B. Wang, J. Leja, A. De Graaff, G.B. Brammer, A. Weibel, P. Van Dokkum, J.F.W. Baggen, K.A. Suess, J.E. Greene, R. Bezanson, N.J. Cleri, M. Hirschmann, I. Labbé, J.J. Matthee, I. Mcconachie, R.P. Naidu, E. Nelson, P.A. Oesch, D.J. Setton, C.C. Williams, Astrophysical Journal Letters 969 (2024).","chicago":"Wang, Bingjie, Joel Leja, Anna De Graaff, Gabriel B. Brammer, Andrea Weibel, Pieter Van Dokkum, Josephine F.W. Baggen, et al. “RUBIES: Evolved Stellar Populations with Extended Formation Histories at z ∼ 7-8 in Candidate Massive Galaxies Identified with JWST/NIRSpec.” <i>Astrophysical Journal Letters</i>. IOP Publishing, 2024. <a href=\"https://doi.org/10.3847/2041-8213/ad55f7\">https://doi.org/10.3847/2041-8213/ad55f7</a>.","ista":"Wang B, Leja J, De Graaff A, Brammer GB, Weibel A, Van Dokkum P, Baggen JFW, Suess KA, Greene JE, Bezanson R, Cleri NJ, Hirschmann M, Labbé I, Matthee JJ, Mcconachie I, Naidu RP, Nelson E, Oesch PA, Setton DJ, Williams CC. 2024. RUBIES: Evolved stellar populations with extended formation histories at z ∼ 7-8 in candidate massive galaxies identified with JWST/NIRSpec. Astrophysical Journal Letters. 969(1), L13.","ieee":"B. Wang <i>et al.</i>, “RUBIES: Evolved stellar populations with extended formation histories at z ∼ 7-8 in candidate massive galaxies identified with JWST/NIRSpec,” <i>Astrophysical Journal Letters</i>, vol. 969, no. 1. IOP Publishing, 2024.","ama":"Wang B, Leja J, De Graaff A, et al. RUBIES: Evolved stellar populations with extended formation histories at z ∼ 7-8 in candidate massive galaxies identified with JWST/NIRSpec. <i>Astrophysical Journal Letters</i>. 2024;969(1). doi:<a href=\"https://doi.org/10.3847/2041-8213/ad55f7\">10.3847/2041-8213/ad55f7</a>","mla":"Wang, Bingjie, et al. “RUBIES: Evolved Stellar Populations with Extended Formation Histories at z ∼ 7-8 in Candidate Massive Galaxies Identified with JWST/NIRSpec.” <i>Astrophysical Journal Letters</i>, vol. 969, no. 1, L13, IOP Publishing, 2024, doi:<a href=\"https://doi.org/10.3847/2041-8213/ad55f7\">10.3847/2041-8213/ad55f7</a>.","apa":"Wang, B., Leja, J., De Graaff, A., Brammer, G. B., Weibel, A., Van Dokkum, P., … Williams, C. C. (2024). RUBIES: Evolved stellar populations with extended formation histories at z ∼ 7-8 in candidate massive galaxies identified with JWST/NIRSpec. <i>Astrophysical Journal Letters</i>. IOP Publishing. <a href=\"https://doi.org/10.3847/2041-8213/ad55f7\">https://doi.org/10.3847/2041-8213/ad55f7</a>"},"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","quality_controlled":"1","oa_version":"Published Version","doi":"10.3847/2041-8213/ad55f7","issue":"1","has_accepted_license":"1","volume":969,"month":"07","acknowledgement":"We thank the anonymous referee for the helpful comments. B.W. and J.L. acknowledge support from JWST-GO04233.009-A. The Cosmic Dawn Center is funded by the Danish National Research Foundation (DNRF) under grant No. 140. This research was supported by the International Space Science Institute (ISSI) in Bern, through ISSI International Team project No. 562 (First Light at Cosmic Dawn: Exploiting the James Webb Space Telescope Revolution). This work is based in part on observations made with the NASA/ESA/CSA James Webb Space Telescope. The data were obtained from the Mikulski Archive for Space Telescopes at the Space Telescope Science Institute, which is operated by the Association of Universities for Research in Astronomy, Inc., under NASA contract NAS 5-03127 for JWST. The JWST data presented in this Letter were obtained from the Mikulski Archive for Space Telescopes (MAST) at the Space Telescope Science Institute. The specific observations analyzed can be accessed via doi:10.17909/3a4n-9p88. Computations for this research were performed on the Pennsylvania State University’s Institute for Computational and Data Sciences’ Roar supercomputer. This publication made use of the NASA Astrophysical Data System for bibliographic information. \r\nFacilities: HST (ACS, WFC3), JWST (NIRCam, NIRSpec). Software: Astropy (Astropy Collaboration et al. 2013, 2018, 2022), dynesty (Speagle 2020), EAzY (Brammer et al. 2008),\r\nemcee (Foreman-Mackey et al. 2013), Matplotlib (Hunter 2007), msaexp (Brammer 2023b), msafit (de Graaff et al. 2024a), NumPy (Harris et al. 2020), Prospector (Johnson et al. 2021), Python-FSPS (Johnson et al. 2023)."},{"date_updated":"2025-09-08T08:10:58Z","day":"01","isi":1,"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"citation":{"ama":"Kohopää K, Ronzani A, Jabdaraghi RN, et al. Effect of ion irradiation on superconducting thin films. <i>APL Materials</i>. 2024;12(7). doi:<a href=\"https://doi.org/10.1063/5.0202851\">10.1063/5.0202851</a>","ieee":"K. Kohopää <i>et al.</i>, “Effect of ion irradiation on superconducting thin films,” <i>APL Materials</i>, vol. 12, no. 7. AIP Publishing, 2024.","ista":"Kohopää K, Ronzani A, Jabdaraghi RN, Bera A, Ribeiro M, Hazra D, Senior JL, Prunnila M, Govenius J, Lehtinen JS, Kemppinen A. 2024. Effect of ion irradiation on superconducting thin films. APL Materials. 12(7), 071101.","chicago":"Kohopää, Katja, Alberto Ronzani, Robab Najafi Jabdaraghi, Arijit Bera, Mário Ribeiro, Dibyendu Hazra, Jorden L Senior, et al. “Effect of Ion Irradiation on Superconducting Thin Films.” <i>APL Materials</i>. AIP Publishing, 2024. <a href=\"https://doi.org/10.1063/5.0202851\">https://doi.org/10.1063/5.0202851</a>.","short":"K. Kohopää, A. Ronzani, R.N. Jabdaraghi, A. Bera, M. Ribeiro, D. Hazra, J.L. Senior, M. Prunnila, J. Govenius, J.S. Lehtinen, A. Kemppinen, APL Materials 12 (2024).","apa":"Kohopää, K., Ronzani, A., Jabdaraghi, R. N., Bera, A., Ribeiro, M., Hazra, D., … Kemppinen, A. (2024). Effect of ion irradiation on superconducting thin films. <i>APL Materials</i>. AIP Publishing. <a href=\"https://doi.org/10.1063/5.0202851\">https://doi.org/10.1063/5.0202851</a>","mla":"Kohopää, Katja, et al. “Effect of Ion Irradiation on Superconducting Thin Films.” <i>APL Materials</i>, vol. 12, no. 7, 071101, AIP Publishing, 2024, doi:<a href=\"https://doi.org/10.1063/5.0202851\">10.1063/5.0202851</a>."},"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","year":"2024","article_type":"original","ec_funded":1,"_id":"17235","intvolume":"        12","month":"07","volume":12,"acknowledgement":"We thank J. A. Sauls for useful discussions. For funding of our research project, we acknowledge the European Union’s Horizon 2020 Research and Innovation Program under Grant Agreement Nos. 862660/Quantum e-leaps, 899558/aCryComm, 766853/EFINED, and ECSEL programme 101007322/MatQu. This project has also received funding from Business Finland through Quantum Technologies Industrial (QuTI) Project No. 128291 and from Research Council of Finland through Grant Nos. 310909, 350220 and Finnish Quantum Flagship project 359284. This work was performed as part of the Research Council of Finland Centres of Excellence program (Project Nos. 336817, 336819, 352934, and 352935). We also acknowledge funding from an internal strategic innovation project of VTT related to the development of quantum computing technologies. This research was supported by the Scientific Service Units of IST Austria through resources provided by Electron Microscopy Facility. J. Senior acknowledges funding from the European Union’s Horizon 2020 Research and Innovation Program under the Marie Skłodowska-Curie Grant Agreement No. 754411. A. Ronzani acknowledges funding from Research Council of Finland (Research Fellowship Project No. 356542).","doi":"10.1063/5.0202851","quality_controlled":"1","oa_version":"Published Version","has_accepted_license":"1","issue":"7","author":[{"first_name":"Katja","full_name":"Kohopää, Katja","last_name":"Kohopää"},{"last_name":"Ronzani","full_name":"Ronzani, Alberto","first_name":"Alberto"},{"first_name":"Robab Najafi","full_name":"Jabdaraghi, Robab Najafi","last_name":"Jabdaraghi"},{"first_name":"Arijit","last_name":"Bera","full_name":"Bera, Arijit"},{"last_name":"Ribeiro","full_name":"Ribeiro, Mário","first_name":"Mário"},{"last_name":"Hazra","full_name":"Hazra, Dibyendu","first_name":"Dibyendu"},{"orcid":"0000-0002-0672-9295","last_name":"Senior","full_name":"Senior, Jorden L","first_name":"Jorden L","id":"5479D234-2D30-11EA-89CC-40953DDC885E"},{"full_name":"Prunnila, Mika","last_name":"Prunnila","first_name":"Mika"},{"last_name":"Govenius","full_name":"Govenius, Joonas","first_name":"Joonas"},{"last_name":"Lehtinen","full_name":"Lehtinen, Janne S.","first_name":"Janne S."},{"first_name":"Antti","full_name":"Kemppinen, Antti","last_name":"Kemppinen"}],"oa":1,"file_date_updated":"2024-07-16T06:30:30Z","acknowledged_ssus":[{"_id":"EM-Fac"}],"publication_identifier":{"eissn":["2166-532X"]},"publication_status":"published","department":[{"_id":"AnHi"}],"ddc":["530"],"publisher":"AIP Publishing","scopus_import":"1","date_published":"2024-07-01T00:00:00Z","abstract":[{"text":"We demonstrate ion irradiation by argon or gallium as a wafer-scale post-processing method to increase disorder in superconducting thin films. We study several widely used superconductors, both single-elements and compounds. We show that ion irradiation increases normal-state resistivity in all our films, which is expected to enable tuning their superconducting properties, for example, toward a higher kinetic inductance. We observe an increase in superconducting transition temperature for Al and MoSi and a decrease for Nb, NbN, and TiN. In MoSi, ion irradiation also improves the mixing of the two materials. We demonstrate the fabrication of an amorphous and homogeneous film of MoSi with uniform thickness, which is promising, for example, for superconducting nanowire single-photon detectors.","lang":"eng"}],"type":"journal_article","article_number":"071101","external_id":{"isi":["001260942200003"]},"file":[{"creator":"dernst","date_updated":"2024-07-16T06:30:30Z","success":1,"checksum":"32a5cdf0ea9c937f806b6039f3219917","content_type":"application/pdf","file_name":"2024_APLMaterial_Kohopaa.pdf","file_id":"17244","access_level":"open_access","file_size":9408198,"relation":"main_file","date_created":"2024-07-16T06:30:30Z"}],"project":[{"grant_number":"754411","name":"ISTplus - Postdoctoral Fellowships","_id":"260C2330-B435-11E9-9278-68D0E5697425","call_identifier":"H2020"}],"language":[{"iso":"eng"}],"title":"Effect of ion irradiation on superconducting thin films","publication":"APL Materials","status":"public","article_processing_charge":"Yes","date_created":"2024-07-14T22:01:11Z"},{"has_accepted_license":"1","oa_version":"Published Version","quality_controlled":"1","doi":"10.1145/3626183.3659969","month":"06","_id":"17236","year":"2024","citation":{"mla":"Kolmogorov, Vladimir. “A Simpler and Parallelizable O(√log n)-Approximation Algorithm for Sparsest Cut.” <i>Proceedings of the 36th ACM Symposium on Parallelism in Algorithms and Architectures</i>, Association for Computing Machinery, 2024, pp. 403–14, doi:<a href=\"https://doi.org/10.1145/3626183.3659969\">10.1145/3626183.3659969</a>.","apa":"Kolmogorov, V. (2024). A simpler and parallelizable O(√log n)-approximation algorithm for sparsest cut. In <i>Proceedings of the 36th ACM Symposium on Parallelism in Algorithms and Architectures</i> (pp. 403–414). Nantes, France: Association for Computing Machinery. <a href=\"https://doi.org/10.1145/3626183.3659969\">https://doi.org/10.1145/3626183.3659969</a>","short":"V. Kolmogorov, in:, Proceedings of the 36th ACM Symposium on Parallelism in Algorithms and Architectures, Association for Computing Machinery, 2024, pp. 403–414.","ieee":"V. Kolmogorov, “A simpler and parallelizable O(√log n)-approximation algorithm for sparsest cut,” in <i>Proceedings of the 36th ACM Symposium on Parallelism in Algorithms and Architectures</i>, Nantes, France, 2024, pp. 403–414.","ista":"Kolmogorov V. 2024. A simpler and parallelizable O(√log n)-approximation algorithm for sparsest cut. Proceedings of the 36th ACM Symposium on Parallelism in Algorithms and Architectures. SPAA: Symposium on Parallelism in Algorithms and Architectures, 403–414.","chicago":"Kolmogorov, Vladimir. “A Simpler and Parallelizable O(√log n)-Approximation Algorithm for Sparsest Cut.” In <i>Proceedings of the 36th ACM Symposium on Parallelism in Algorithms and Architectures</i>, 403–14. Association for Computing Machinery, 2024. <a href=\"https://doi.org/10.1145/3626183.3659969\">https://doi.org/10.1145/3626183.3659969</a>.","ama":"Kolmogorov V. A simpler and parallelizable O(√log n)-approximation algorithm for sparsest cut. In: <i>Proceedings of the 36th ACM Symposium on Parallelism in Algorithms and Architectures</i>. Association for Computing Machinery; 2024:403-414. doi:<a href=\"https://doi.org/10.1145/3626183.3659969\">10.1145/3626183.3659969</a>"},"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"isi":1,"day":"17","date_updated":"2026-01-21T09:46:25Z","page":"403-414","article_processing_charge":"Yes (via OA deal)","date_created":"2024-07-14T22:01:11Z","status":"public","publication":"Proceedings of the 36th ACM Symposium on Parallelism in Algorithms and Architectures","title":"A simpler and parallelizable O(√log n)-approximation algorithm for sparsest cut","corr_author":"1","language":[{"iso":"eng"}],"arxiv":1,"conference":{"end_date":"2024-06-21","start_date":"2024-06-17","name":"SPAA: Symposium on Parallelism in Algorithms and Architectures","location":"Nantes, France"},"OA_place":"publisher","file":[{"date_updated":"2024-07-16T06:38:08Z","creator":"dernst","content_type":"application/pdf","success":1,"checksum":"6ca18ac8508719dbd5d5735f4c991af2","file_size":1116166,"access_level":"open_access","file_id":"17245","file_name":"2024_SPAA_Kolmogorov.pdf","date_created":"2024-07-16T06:38:08Z","relation":"main_file"}],"external_id":{"arxiv":["2307.00115"],"isi":["001253331900044"]},"type":"conference","date_published":"2024-06-17T00:00:00Z","abstract":[{"lang":"eng","text":"Currently, the best known tradeoff between approximation ratio and complexity for the Sparsest Cut problem is achieved by the algorithm in [Sherman, FOCS 2009]: it computes O(√(log n)/ε)-approximation using O(nε logO(1) n) maxflows for any ε∈[Θ(1/log n),Θ(1)]. It works by solving the SDP relaxation of [Arora-Rao-Vazirani, STOC 2004] using the Multiplicative Weights Update algorithm (MW) of [Arora-Kale, JACM 2016]. To implement one MW step, Sherman approximately solves a multicommodity flow problem using another application of MW. Nested MW steps are solved via a certain \"chaining\" algorithm that combines results of multiple calls to the maxflow algorithm.\r\nWe present an alternative approach that avoids solving the multicommodity flow problem and instead computes \"violating paths\". This simplifies Sherman's algorithm by removing a need for a nested application of MW, and also allows parallelization: we show how to compute O(√(log n)/ε)-approximation via O(logO(1) n) maxflows using O(nε) processors.\r\nWe also revisit Sherman's chaining algorithm, and present a simpler version together with a new analysis."}],"publisher":"Association for Computing Machinery","scopus_import":"1","OA_type":"hybrid","ddc":["510"],"publication_status":"published","department":[{"_id":"VlKo"}],"publication_identifier":{"isbn":["9798400704161"],"issn":["1548-6109"]},"file_date_updated":"2024-07-16T06:38:08Z","oa":1,"related_material":{"record":[{"id":"21007","relation":"extended_version","status":"public"}]},"author":[{"last_name":"Kolmogorov","full_name":"Kolmogorov, Vladimir","first_name":"Vladimir","id":"3D50B0BA-F248-11E8-B48F-1D18A9856A87"}]},{"issue":"6","doi":"10.1093/jeb/voae048","oa_version":"Preprint","quality_controlled":"1","acknowledgement":"This work was funded by the EU project MARFOR Biodiversa/004/2015. L.F. was additionally funded by the Region Bretagne (ARED 2017 REEALG) and the NOMIS Foundation. The project leading to this publication has received funding from the EC2CO (CNRS) fund and from the European FEDER Fund under project 1166-39417.\r\nThis work is especially dedicated to the memory of Gernot Glöckner who contributed to the sequencing of Laminaria digitata genome and passed away in very recent time. The authors thank the ABiMS platform of the Roscoff biological station (http://abims.sb-roscoff.fr) for providing the HPC resources that contributed to the search results reported in this document. We also acknowledge the staff of the “Cluster de calcul intensif HPC” Platform of the OSU Institut Pythéas (Aix-Marseille Université, INSU-CNRS) for providing the computing facilities.","month":"06","volume":37,"_id":"17237","intvolume":"        37","article_type":"original","year":"2024","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"apa":"Reynes, L., Fouqueau, L., Aurelle, D., Mauger, S., Destombe, C., &#38; Valero, M. (2024). Temporal genomics help in deciphering neutral and adaptive patterns in the contemporary evolution of kelp populations. <i>Journal of Evolutionary Biology</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/jeb/voae048\">https://doi.org/10.1093/jeb/voae048</a>","mla":"Reynes, Lauric, et al. “Temporal Genomics Help in Deciphering Neutral and Adaptive Patterns in the Contemporary Evolution of Kelp Populations.” <i>Journal of Evolutionary Biology</i>, vol. 37, no. 6, Oxford University Press, 2024, pp. 677–92, doi:<a href=\"https://doi.org/10.1093/jeb/voae048\">10.1093/jeb/voae048</a>.","ista":"Reynes L, Fouqueau L, Aurelle D, Mauger S, Destombe C, Valero M. 2024. Temporal genomics help in deciphering neutral and adaptive patterns in the contemporary evolution of kelp populations. Journal of Evolutionary Biology. 37(6), 677–692.","ama":"Reynes L, Fouqueau L, Aurelle D, Mauger S, Destombe C, Valero M. Temporal genomics help in deciphering neutral and adaptive patterns in the contemporary evolution of kelp populations. <i>Journal of Evolutionary Biology</i>. 2024;37(6):677-692. doi:<a href=\"https://doi.org/10.1093/jeb/voae048\">10.1093/jeb/voae048</a>","ieee":"L. Reynes, L. Fouqueau, D. Aurelle, S. Mauger, C. Destombe, and M. Valero, “Temporal genomics help in deciphering neutral and adaptive patterns in the contemporary evolution of kelp populations,” <i>Journal of Evolutionary Biology</i>, vol. 37, no. 6. Oxford University Press, pp. 677–692, 2024.","chicago":"Reynes, Lauric, Louise Fouqueau, Didier Aurelle, Stephane Mauger, Christophe Destombe, and Myriam Valero. “Temporal Genomics Help in Deciphering Neutral and Adaptive Patterns in the Contemporary Evolution of Kelp Populations.” <i>Journal of Evolutionary Biology</i>. Oxford University Press, 2024. <a href=\"https://doi.org/10.1093/jeb/voae048\">https://doi.org/10.1093/jeb/voae048</a>.","short":"L. Reynes, L. Fouqueau, D. Aurelle, S. Mauger, C. Destombe, M. Valero, Journal of Evolutionary Biology 37 (2024) 677–692."},"date_updated":"2025-06-04T07:23:23Z","day":"01","date_created":"2024-07-14T22:01:12Z","article_processing_charge":"No","status":"public","pmid":1,"page":"677-692","title":"Temporal genomics help in deciphering neutral and adaptive patterns in the contemporary evolution of kelp populations","publication":"Journal of Evolutionary Biology","arxiv":1,"language":[{"iso":"eng"}],"external_id":{"pmid":["38629140"],"arxiv":["2404.14003"]},"main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2404.14003"}],"type":"journal_article","date_published":"2024-06-01T00:00:00Z","abstract":[{"lang":"eng","text":"The impact of climate change on populations will be contingent upon their contemporary adaptive evolution. In this study, we investigated the contemporary evolution of 4 populations of the cold-water kelp Laminaria digitata by analyzing their spatial and temporal genomic variations using ddRAD-sequencing. These populations were sampled from the center to the southern margin of its north-eastern Atlantic distribution at 2 time points, spanning at least 2 generations. Through genome scans for local adaptation at a single time point, we identified candidate loci that showed clinal variation correlated with changes in sea surface temperature (SST) along latitudinal gradients. This finding suggests that SST may drive the adaptive response of these kelp populations, although factors such as species’ demographic history should also be considered. Additionally, we performed a simulation approach to distinguish the effect of selection from genetic drift in allele frequency changes over time. This enabled the detection of loci in the southernmost population that exhibited temporal differentiation beyond what would be expected from genetic drift alone: these are candidate loci which could have evolved under selection over time. In contrast, we did not detect any outlier locus based on temporal differentiation in the population from the North Sea, which also displayed low and decreasing levels of genetic diversity. The diverse evolutionary scenarios observed among populations can be attributed to variations in the prevalence of selection relative to genetic drift across different environments. Therefore, our study highlights the potential of temporal genomics to offer valuable insights into the contemporary evolution of marine foundation species facing climate change."}],"scopus_import":"1","publisher":"Oxford University Press","author":[{"first_name":"Lauric","full_name":"Reynes, Lauric","last_name":"Reynes"},{"orcid":"0000-0003-0371-9339","last_name":"Fouqueau","full_name":"Fouqueau, Louise","first_name":"Louise","id":"1676e173-8143-11ed-8927-fe165216a93f"},{"first_name":"Didier","last_name":"Aurelle","full_name":"Aurelle, Didier"},{"full_name":"Mauger, Stephane","last_name":"Mauger","first_name":"Stephane"},{"full_name":"Destombe, Christophe","last_name":"Destombe","first_name":"Christophe"},{"last_name":"Valero","full_name":"Valero, Myriam","first_name":"Myriam"}],"publication_status":"published","publication_identifier":{"eissn":["1420-9101"],"issn":["1010-061X"]},"department":[{"_id":"NiBa"}],"oa":1},{"publication_status":"published","department":[{"_id":"NiBa"}],"publication_identifier":{"issn":["1010-061X"],"eissn":["1420-9101"]},"file_date_updated":"2024-07-15T09:45:25Z","oa":1,"author":[{"full_name":"Barton, Nicholas H","orcid":"0000-0002-8548-5240","last_name":"Barton","first_name":"Nicholas H","id":"4880FE40-F248-11E8-B48F-1D18A9856A87"}],"type":"journal_article","date_published":"2024-06-01T00:00:00Z","abstract":[{"lang":"eng","text":"We know that heritable variation is abundant, and that selection causes all but the smallest populations to rapidly shift beyond their original trait distribution. So then, what limits the range of a species? There are physical constraints and also population genetic limits to the effectiveness of selection, ultimately set by population size. Global adaptation, where the same genotype is favoured over the whole range, is most efficient when based on a multitude of weakly selected alleles and is effective even when local demes are small, provided that there is some gene flow. In contrast, local adaptation is sensitive to gene flow and may require alleles with substantial effect. How can populations combine the advantages of large effective size with the ability to specialise into local niches? To what extent does reproductive isolation help resolve this tension? I address these questions using eco-evolutionary models of polygenic adaptation, contrasting discrete demes with continuousspace."}],"publisher":"Oxford University Press","scopus_import":"1","ddc":["570"],"file":[{"creator":"dernst","date_updated":"2024-07-15T09:45:25Z","checksum":"94e6b68bddf6cadcec29c7f41647359f","success":1,"content_type":"application/pdf","file_id":"17241","file_name":"2024_JourEvolutionaryBiology_Barton.pdf","access_level":"open_access","file_size":1194263,"relation":"main_file","date_created":"2024-07-15T09:45:25Z"}],"external_id":{"pmid":["38683160"],"isi":["001225323900001"]},"project":[{"grant_number":"101055327","_id":"bd6958e0-d553-11ed-ba76-86eba6a76c00","name":"Understanding the evolution of continuous genomes"}],"corr_author":"1","language":[{"iso":"eng"}],"publication":"Journal of Evolutionary Biology","title":"Limits to species' range: The tension between local and global adaptation","page":"605-615","article_processing_charge":"Yes (via OA deal)","date_created":"2024-07-14T22:01:12Z","pmid":1,"status":"public","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"isi":1,"date_updated":"2025-09-08T08:08:41Z","day":"01","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","citation":{"ieee":"N. H. Barton, “Limits to species’ range: The tension between local and global adaptation,” <i>Journal of Evolutionary Biology</i>, vol. 37, no. 6. Oxford University Press, pp. 605–615, 2024.","ista":"Barton NH. 2024. Limits to species’ range: The tension between local and global adaptation. Journal of Evolutionary Biology. 37(6), 605–615.","chicago":"Barton, Nicholas H. “Limits to Species’ Range: The Tension between Local and Global Adaptation.” <i>Journal of Evolutionary Biology</i>. Oxford University Press, 2024. <a href=\"https://doi.org/10.1093/jeb/voae052\">https://doi.org/10.1093/jeb/voae052</a>.","ama":"Barton NH. Limits to species’ range: The tension between local and global adaptation. <i>Journal of Evolutionary Biology</i>. 2024;37(6):605-615. doi:<a href=\"https://doi.org/10.1093/jeb/voae052\">10.1093/jeb/voae052</a>","short":"N.H. Barton, Journal of Evolutionary Biology 37 (2024) 605–615.","apa":"Barton, N. H. (2024). Limits to species’ range: The tension between local and global adaptation. <i>Journal of Evolutionary Biology</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/jeb/voae052\">https://doi.org/10.1093/jeb/voae052</a>","mla":"Barton, Nicholas H. “Limits to Species’ Range: The Tension between Local and Global Adaptation.” <i>Journal of Evolutionary Biology</i>, vol. 37, no. 6, Oxford University Press, 2024, pp. 605–15, doi:<a href=\"https://doi.org/10.1093/jeb/voae052\">10.1093/jeb/voae052</a>."},"article_type":"review","year":"2024","intvolume":"        37","_id":"17238","volume":37,"month":"06","acknowledgement":"This work was supported by a grant from the ERC, 101055327, “HaplotypeStructure”. I thank Himani Sachdeva, Michal Hledik, Jitka Polechova, and the reviewers for their helpful comments.","oa_version":"Published Version","quality_controlled":"1","doi":"10.1093/jeb/voae052","issue":"6","has_accepted_license":"1"}]