[{"doi":"10.1016/j.xpro.2023.102795","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"Elsevier","_id":"14794","status":"public","type":"journal_article","project":[{"grant_number":"24812","name":"Molecular mechanisms of radial neuronal migration","_id":"2625A13E-B435-11E9-9278-68D0E5697425"}],"date_updated":"2025-04-15T07:32:40Z","pmid":1,"abstract":[{"lang":"eng","text":"Mosaic analysis with double markers (MADM) technology enables the sparse labeling of genetically defined neurons. We present a protocol for time-lapse imaging of cortical projection neuron migration in mice using MADM. We describe steps for the isolation, culturing, and 4D imaging of neuronal dynamics in MADM-labeled brain tissue. While this protocol is compatible with other single-cell labeling methods, the MADM approach provides a genetic platform for the functional assessment of cell-autonomous candidate gene function and the relative contribution of non-cell-autonomous effects.\r\n\r\nFor complete details on the use and execution of this protocol, please refer to Hansen et al. (2022),1 Contreras et al. (2021),2 and Amberg and Hippenmeyer (2021).3"}],"file_date_updated":"2024-07-16T12:04:46Z","title":"Time-lapse imaging of cortical projection neuron migration in mice using mosaic analysis with double markers","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"language":[{"iso":"eng"}],"file":[{"file_name":"2024_STARProtoc_Hansen.pdf","content_type":"application/pdf","file_id":"17264","access_level":"open_access","creator":"dernst","success":1,"date_created":"2024-07-16T12:04:46Z","relation":"main_file","checksum":"4644d537451c5c114a9d7c7829b65bba","date_updated":"2024-07-16T12:04:46Z","file_size":3758943}],"fulldoi":"https://doi.org/10.1016/j.xpro.2023.102795","external_id":{"pmid":["38165800"]},"day":"15","date_published":"2024-03-15T00:00:00Z","article_number":"102795","acknowledgement":"We thank Florian Pauler for discussion and his expert technical support. This research was supported by the Scientific Service Units (SSU) at IST Austria through resources provided by the Imaging and Optics Facility (IOF) and Preclinical Facility (PCF). A.H.H. was a recipient of a DOC Fellowship (24812) of the Austrian Academy of Sciences.","quality_controlled":"1","publication_identifier":{"eissn":["2666-1667"]},"volume":5,"has_accepted_license":"1","acknowledged_ssus":[{"_id":"Bio"},{"_id":"PreCl"}],"related_material":{"link":[{"url":"http://github.com/hippenmeyerlab","relation":"software"}]},"citation":{"ama":"Hansen AH, Hippenmeyer S. Time-lapse imaging of cortical projection neuron migration in mice using mosaic analysis with double markers. STAR Protocols. 2024;5(1). doi:10.1016/j.xpro.2023.102795","mla":"Hansen, Andi H., and Simon Hippenmeyer. “Time-Lapse Imaging of Cortical Projection Neuron Migration in Mice Using Mosaic Analysis with Double Markers.” STAR Protocols, vol. 5, no. 1, 102795, Elsevier, 2024, doi:10.1016/j.xpro.2023.102795.","ista":"Hansen AH, Hippenmeyer S. 2024. Time-lapse imaging of cortical projection neuron migration in mice using mosaic analysis with double markers. STAR Protocols. 5(1), 102795.","chicago":"Hansen, Andi H, and Simon Hippenmeyer. “Time-Lapse Imaging of Cortical Projection Neuron Migration in Mice Using Mosaic Analysis with Double Markers.” STAR Protocols. Elsevier, 2024. https://doi.org/10.1016/j.xpro.2023.102795.","short":"A.H. Hansen, S. Hippenmeyer, STAR Protocols 5 (2024).","ieee":"A. H. Hansen and S. Hippenmeyer, “Time-lapse imaging of cortical projection neuron migration in mice using mosaic analysis with double markers,” STAR Protocols, vol. 5, no. 1. Elsevier, 2024.","apa":"Hansen, A. H., & Hippenmeyer, S. (2024). Time-lapse imaging of cortical projection neuron migration in mice using mosaic analysis with double markers. STAR Protocols. Elsevier. https://doi.org/10.1016/j.xpro.2023.102795"},"corr_author":"1","publication":"STAR Protocols","date_created":"2024-01-14T23:00:56Z","department":[{"_id":"SiHi"}],"scopus_import":"1","year":"2024","oa":1,"article_processing_charge":"Yes","intvolume":" 5","issue":"1","oa_version":"Published Version","month":"03","author":[{"last_name":"Hansen","first_name":"Andi H","full_name":"Hansen, Andi H","id":"38853E16-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Hippenmeyer, Simon","orcid":"0000-0003-2279-1061","first_name":"Simon","id":"37B36620-F248-11E8-B48F-1D18A9856A87","last_name":"Hippenmeyer"}],"publication_status":"published","article_type":"review","ddc":["570"]},{"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"day":"01","date_published":"2024-10-01T00:00:00Z","file":[{"creator":"dernst","success":1,"date_created":"2025-01-09T08:10:54Z","relation":"main_file","checksum":"34f44cad6a210ff66791ee37e590af2c","date_updated":"2025-01-09T08:10:54Z","file_size":880117,"content_type":"application/pdf","file_name":"2024_ProbTheoryRelatFields_Clozeau.pdf","file_id":"18788","access_level":"open_access"}],"fulldoi":"https://doi.org/10.1007/s00440-023-01254-0","isi":1,"language":[{"iso":"eng"}],"external_id":{"arxiv":["2303.00353"],"isi":["001136206200002"]},"type":"journal_article","project":[{"name":"Bridging Scales in Random Materials","call_identifier":"H2020","_id":"0aa76401-070f-11eb-9043-b5bb049fa26d","grant_number":"948819"}],"status":"public","_id":"14797","doi":"10.1007/s00440-023-01254-0","publisher":"Springer Nature","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","file_date_updated":"2025-01-09T08:10:54Z","abstract":[{"lang":"eng","text":"We study a random matching problem on closed compact 2 -dimensional Riemannian manifolds (with respect to the squared Riemannian distance), with samples of random points whose common law is absolutely continuous with respect to the volume measure with strictly positive and bounded density. We show that given two sequences of numbers n and m=m(n) of points, asymptotically equivalent as n goes to infinity, the optimal transport plan between the two empirical measures μn and νm is quantitatively well-approximated by (Id,exp(∇hn))#μn where hn solves a linear elliptic PDE obtained by a regularized first-order linearization of the Monge-Ampère equation. This is obtained in the case of samples of correlated random points for which a stretched exponential decay of the α -mixing coefficient holds and for a class of discrete-time Markov chains having a unique absolutely continuous invariant measure with respect to the volume measure."}],"title":"Annealed quantitative estimates for the quadratic 2D-discrete random matching problem","page":"485-541","date_updated":"2025-09-04T11:43:43Z","intvolume":" 190","oa_version":"Published Version","month":"10","article_processing_charge":"Yes (in subscription journal)","year":"2024","oa":1,"ddc":["510"],"article_type":"original","publication_status":"published","author":[{"last_name":"Clozeau","id":"fea1b376-906f-11eb-847d-b2c0cf46455b","first_name":"Nicolas","full_name":"Clozeau, Nicolas"},{"last_name":"Mattesini","full_name":"Mattesini, Francesco","first_name":"Francesco"}],"OA_type":"hybrid","quality_controlled":"1","arxiv":1,"OA_place":"publisher","volume":190,"publication_identifier":{"issn":["0178-8051"],"eissn":["1432-2064"]},"ec_funded":1,"acknowledgement":"NC has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (Grant agreement No 948819).\r\nFM is supported by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) through the SPP 2265 Random Geometric Systems. FM has been funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany’s Excellence Strategy EXC 2044 -390685587, Mathematics Münster: Dynamics–Geometry–Structure. FM has been funded by the Max Planck Institute for Mathematics in the Sciences.","publication":"Probability Theory and Related Fields","department":[{"_id":"JuFi"}],"scopus_import":"1","date_created":"2024-01-14T23:00:57Z","has_accepted_license":"1","corr_author":"1","citation":{"ama":"Clozeau N, Mattesini F. Annealed quantitative estimates for the quadratic 2D-discrete random matching problem. Probability Theory and Related Fields. 2024;190:485-541. doi:10.1007/s00440-023-01254-0","mla":"Clozeau, Nicolas, and Francesco Mattesini. “Annealed Quantitative Estimates for the Quadratic 2D-Discrete Random Matching Problem.” Probability Theory and Related Fields, vol. 190, Springer Nature, 2024, pp. 485–541, doi:10.1007/s00440-023-01254-0.","ista":"Clozeau N, Mattesini F. 2024. Annealed quantitative estimates for the quadratic 2D-discrete random matching problem. Probability Theory and Related Fields. 190, 485–541.","chicago":"Clozeau, Nicolas, and Francesco Mattesini. “Annealed Quantitative Estimates for the Quadratic 2D-Discrete Random Matching Problem.” Probability Theory and Related Fields. Springer Nature, 2024. https://doi.org/10.1007/s00440-023-01254-0.","ieee":"N. Clozeau and F. Mattesini, “Annealed quantitative estimates for the quadratic 2D-discrete random matching problem,” Probability Theory and Related Fields, vol. 190. Springer Nature, pp. 485–541, 2024.","apa":"Clozeau, N., & Mattesini, F. (2024). Annealed quantitative estimates for the quadratic 2D-discrete random matching problem. Probability Theory and Related Fields. Springer Nature. https://doi.org/10.1007/s00440-023-01254-0","short":"N. Clozeau, F. Mattesini, Probability Theory and Related Fields 190 (2024) 485–541."}},{"author":[{"last_name":"Schmid","first_name":"Stefan","full_name":"Schmid, Stefan"},{"id":"130759D2-D7DD-11E9-87D2-DE0DE6697425","first_name":"Jakub","full_name":"Svoboda, Jakub","orcid":"0000-0002-1419-3267","last_name":"Svoboda"},{"first_name":"Michelle X","orcid":"0009-0001-3676-4809","full_name":"Yeo, Michelle X","id":"2D82B818-F248-11E8-B48F-1D18A9856A87","last_name":"Yeo"}],"publication_status":"published","article_type":"original","ddc":["000"],"year":"2024","oa":1,"article_processing_charge":"Yes (via OA deal)","month":"03","oa_version":"Published Version","intvolume":" 989","citation":{"chicago":"Schmid, Stefan, Jakub Svoboda, and Michelle X Yeo. “Weighted Packet Selection for Rechargeable Links in Cryptocurrency Networks: Complexity and Approximation.” Theoretical Computer Science. Elsevier, 2024. https://doi.org/10.1016/j.tcs.2023.114353.","ieee":"S. Schmid, J. Svoboda, and M. X. Yeo, “Weighted packet selection for rechargeable links in cryptocurrency networks: Complexity and approximation,” Theoretical Computer Science, vol. 989. Elsevier, 2024.","apa":"Schmid, S., Svoboda, J., & Yeo, M. X. (2024). Weighted packet selection for rechargeable links in cryptocurrency networks: Complexity and approximation. Theoretical Computer Science. Elsevier. https://doi.org/10.1016/j.tcs.2023.114353","short":"S. Schmid, J. Svoboda, M.X. Yeo, Theoretical Computer Science 989 (2024).","ama":"Schmid S, Svoboda J, Yeo MX. Weighted packet selection for rechargeable links in cryptocurrency networks: Complexity and approximation. Theoretical Computer Science. 2024;989. doi:10.1016/j.tcs.2023.114353","mla":"Schmid, Stefan, et al. “Weighted Packet Selection for Rechargeable Links in Cryptocurrency Networks: Complexity and Approximation.” Theoretical Computer Science, vol. 989, 114353, Elsevier, 2024, doi:10.1016/j.tcs.2023.114353.","ista":"Schmid S, Svoboda J, Yeo MX. 2024. Weighted packet selection for rechargeable links in cryptocurrency networks: Complexity and approximation. Theoretical Computer Science. 989, 114353."},"corr_author":"1","has_accepted_license":"1","related_material":{"record":[{"id":"19985","relation":"earlier_version","status":"public"}]},"date_created":"2024-01-16T13:40:41Z","department":[{"_id":"KrCh"},{"_id":"KrPi"}],"scopus_import":"1","publication":"Theoretical Computer Science","article_number":"114353","acknowledgement":"We thank Mahsa Bastankhah and Mohammad Ali Maddah-Ali for fruitful discussions about different variants of the problem. This work is supported by the European Research Council (ERC) Consolidator Project 864228 (AdjustNet), 2020-2025, the ERC CoG 863818 (ForM-SMArt), and the German Research Foundation (DFG) grant 470029389 (FlexNets), 2021-2024.","volume":989,"publication_identifier":{"issn":["0304-3975"]},"ec_funded":1,"quality_controlled":"1","external_id":{"isi":["001168211400001"]},"language":[{"iso":"eng"}],"isi":1,"fulldoi":"https://doi.org/10.1016/j.tcs.2023.114353","file":[{"success":1,"creator":"dernst","relation":"main_file","date_created":"2024-07-16T12:02:25Z","date_updated":"2024-07-16T12:02:25Z","checksum":"efd5b7e738bf845312ba53889a3e13e4","file_size":603570,"content_type":"application/pdf","file_name":"2024_TheorComputerScience_Schmid.pdf","file_id":"17263","access_level":"open_access"}],"date_published":"2024-03-21T00:00:00Z","day":"21","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"keyword":["General Computer Science","Theoretical Computer Science"],"date_updated":"2025-12-02T14:02:37Z","title":"Weighted packet selection for rechargeable links in cryptocurrency networks: Complexity and approximation","abstract":[{"text":"We consider a natural problem dealing with weighted packet selection across a rechargeable link, which e.g., finds applications in cryptocurrency networks. The capacity of a link (u, v) is determined by how many nodes u and v allocate for this link. Specifically, the input is a finite ordered sequence of packets that arrive in both directions along a link. Given (u, v) and a packet of weight x going from u to v, node u can either accept or reject the packet. If u accepts the packet, the capacity on link (u, v) decreases by x. Correspondingly, v's capacity on \r\n increases by x. If a node rejects the packet, this will entail a cost affinely linear in the weight of the packet. A link is “rechargeable” in the sense that the total capacity of the link has to remain constant, but the allocation of capacity at the ends of the link can depend arbitrarily on the nodes' decisions. The goal is to minimise the sum of the capacity injected into the link and the cost of rejecting packets. We show that the problem is NP-hard, but can be approximated efficiently with a ratio of (1+E) . (1+3) for some arbitrary E>0.","lang":"eng"}],"file_date_updated":"2024-07-16T12:02:25Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","publisher":"Elsevier","doi":"10.1016/j.tcs.2023.114353","_id":"14820","status":"public","type":"journal_article","project":[{"name":"Formal Methods for Stochastic Models: Algorithms and Applications","call_identifier":"H2020","_id":"0599E47C-7A3F-11EA-A408-12923DDC885E","grant_number":"863818"}]},{"quality_controlled":"1","publication_identifier":{"issn":["2574-0962"]},"volume":7,"acknowledgement":"This work was supported by the Technology Innovation Program (20011622, Development of Battery System Applied High-Efficiency Heat Control Polymer and Part Component) funded by the Ministry of Trade, Industry & Energy (MOTIE, Korea). Author acknowledge to Prof. Tsunehiro Takeuchi from Toyota Technological Institute, Nagoya, Japan for the support of computational resources.","publication":"ACS Applied Energy Materials","department":[{"_id":"MaIb"}],"scopus_import":"1","date_created":"2024-01-17T12:48:35Z","corr_author":"1","citation":{"mla":"Kiran, Gundegowda Kalligowdanadoddi, et al. “Interface Engineering Modulation Combined with Electronic Structure Modification of Zn-Doped NiO Heterostructure for Efficient Water-Splitting Activity.” ACS Applied Energy Materials, vol. 7, no. 1, American Chemical Society, 2024, pp. 214–29, doi:10.1021/acsaem.3c02519.","ama":"Kiran GK, Singh S, Mahato N, et al. Interface engineering modulation combined with electronic structure modification of Zn-doped NiO heterostructure for efficient water-splitting activity. ACS Applied Energy Materials. 2024;7(1):214-229. doi:10.1021/acsaem.3c02519","ista":"Kiran GK, Singh S, Mahato N, Sreekanth TVM, Dillip GR, Yoo K, Kim J. 2024. Interface engineering modulation combined with electronic structure modification of Zn-doped NiO heterostructure for efficient water-splitting activity. ACS Applied Energy Materials. 7(1), 214–229.","chicago":"Kiran, Gundegowda Kalligowdanadoddi, Saurabh Singh, Neelima Mahato, Thupakula Venkata Madhukar Sreekanth, Gowra Raghupathy Dillip, Kisoo Yoo, and Jonghoon Kim. “Interface Engineering Modulation Combined with Electronic Structure Modification of Zn-Doped NiO Heterostructure for Efficient Water-Splitting Activity.” ACS Applied Energy Materials. American Chemical Society, 2024. https://doi.org/10.1021/acsaem.3c02519.","apa":"Kiran, G. K., Singh, S., Mahato, N., Sreekanth, T. V. M., Dillip, G. R., Yoo, K., & Kim, J. (2024). Interface engineering modulation combined with electronic structure modification of Zn-doped NiO heterostructure for efficient water-splitting activity. ACS Applied Energy Materials. American Chemical Society. https://doi.org/10.1021/acsaem.3c02519","ieee":"G. K. Kiran et al., “Interface engineering modulation combined with electronic structure modification of Zn-doped NiO heterostructure for efficient water-splitting activity,” ACS Applied Energy Materials, vol. 7, no. 1. American Chemical Society, pp. 214–229, 2024.","short":"G.K. Kiran, S. Singh, N. Mahato, T.V.M. Sreekanth, G.R. Dillip, K. Yoo, J. Kim, ACS Applied Energy Materials 7 (2024) 214–229."},"oa_version":"None","intvolume":" 7","issue":"1","month":"01","article_processing_charge":"No","year":"2024","article_type":"original","publication_status":"published","author":[{"full_name":"Kiran, Gundegowda Kalligowdanadoddi","first_name":"Gundegowda Kalligowdanadoddi","last_name":"Kiran"},{"last_name":"Singh","first_name":"Saurabh","orcid":"0000-0003-2209-5269","full_name":"Singh, Saurabh","id":"12d625da-9cb3-11ed-9667-af09d37d3f0a"},{"full_name":"Mahato, Neelima","first_name":"Neelima","last_name":"Mahato"},{"full_name":"Sreekanth, Thupakula Venkata Madhukar","first_name":"Thupakula Venkata Madhukar","last_name":"Sreekanth"},{"full_name":"Dillip, Gowra Raghupathy","first_name":"Gowra Raghupathy","last_name":"Dillip"},{"last_name":"Yoo","full_name":"Yoo, Kisoo","first_name":"Kisoo"},{"last_name":"Kim","first_name":"Jonghoon","full_name":"Kim, Jonghoon"}],"type":"journal_article","_id":"14828","status":"public","doi":"10.1021/acsaem.3c02519","publisher":"American Chemical Society","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","abstract":[{"lang":"eng","text":"Production of hydrogen at large scale requires development of non-noble, inexpensive, and high-performing catalysts for constructing water-splitting devices. Herein, we report the synthesis of Zn-doped NiO heterostructure (ZnNiO) catalysts at room temperature via a coprecipitation method followed by drying (at 80 °C, 6 h) and calcination at an elevated temperature of 400 °C for 5 h under three distinct conditions, namely, air, N2, and vacuum. The vacuum-synthesized catalyst demonstrates a low overpotential of 88 mV at −10 mA cm–2 and a small Tafel slope of 73 mV dec–1 suggesting relatively higher charge transfer kinetics for hydrogen evolution reactions (HER) compared with the specimens synthesized under N2 or O2 atmosphere. It also demonstrates an oxygen evolution (OER) overpotential of 260 mV at 10 mA cm–2 with a low Tafel slope of 63 mV dec–1. In a full-cell water-splitting device, the vacuum-synthesized ZnNiO heterostructure demonstrates a cell voltage of 1.94 V at 50 mA cm–2 and shows remarkable stability over 24 h at a high current density of 100 mA cm–2. It is also demonstrated in this study that Zn-doping, surface, and interface engineering in transition-metal oxides play a crucial role in efficient electrocatalytic water splitting. Also, the results obtained from density functional theory (DFT + U = 0–8 eV), where U is the on-site Coulomb repulsion parameter also known as Hubbard U, based electronic structure calculations confirm that Zn doping constructively modifies the electronic structure, in both the valence band and the conduction band, and found to be suitable in tailoring the carrier’s effective masses of electrons and holes. The decrease in electron’s effective masses together with large differences between the effective masses of electrons and holes is noticed, which is found to be mainly responsible for achieving the best water-splitting performance from a 9% Zn-doped NiO sample prepared under vacuum."}],"title":"Interface engineering modulation combined with electronic structure modification of Zn-doped NiO heterostructure for efficient water-splitting activity","date_updated":"2024-10-09T21:07:53Z","page":"214-229","keyword":["Electrical and Electronic Engineering","Materials Chemistry","Electrochemistry","Energy Engineering and Power Technology","Chemical Engineering (miscellaneous)"],"day":"08","date_published":"2024-01-08T00:00:00Z","isi":1,"fulldoi":"https://doi.org/10.1021/acsaem.3c02519","language":[{"iso":"eng"}],"external_id":{"isi":["001138342900001"]}},{"article_number":"151380","acknowledgement":"We acknowledge members of the Loose laboratory at ISTA for helpful discussions—in particular M. Kojic for his insightful comments. This work was supported by the Austrian Science Fund (FWF P34607) to M.L.","quality_controlled":"1","publication_identifier":{"issn":["0171-9335"]},"volume":103,"has_accepted_license":"1","citation":{"ama":"Radler P, Loose M. A dynamic duo: Understanding the roles of FtsZ and FtsA for Escherichia coli cell division through in vitro approaches. European Journal of Cell Biology. 2024;103(1). doi:10.1016/j.ejcb.2023.151380","mla":"Radler, Philipp, and Martin Loose. “A Dynamic Duo: Understanding the Roles of FtsZ and FtsA for Escherichia Coli Cell Division through in Vitro Approaches.” European Journal of Cell Biology, vol. 103, no. 1, 151380, Elsevier, 2024, doi:10.1016/j.ejcb.2023.151380.","ista":"Radler P, Loose M. 2024. A dynamic duo: Understanding the roles of FtsZ and FtsA for Escherichia coli cell division through in vitro approaches. European Journal of Cell Biology. 103(1), 151380.","chicago":"Radler, Philipp, and Martin Loose. “A Dynamic Duo: Understanding the Roles of FtsZ and FtsA for Escherichia Coli Cell Division through in Vitro Approaches.” European Journal of Cell Biology. Elsevier, 2024. https://doi.org/10.1016/j.ejcb.2023.151380.","ieee":"P. Radler and M. Loose, “A dynamic duo: Understanding the roles of FtsZ and FtsA for Escherichia coli cell division through in vitro approaches,” European Journal of Cell Biology, vol. 103, no. 1. Elsevier, 2024.","apa":"Radler, P., & Loose, M. (2024). A dynamic duo: Understanding the roles of FtsZ and FtsA for Escherichia coli cell division through in vitro approaches. European Journal of Cell Biology. Elsevier. https://doi.org/10.1016/j.ejcb.2023.151380","short":"P. Radler, M. Loose, European Journal of Cell Biology 103 (2024)."},"corr_author":"1","publication":"European Journal of Cell Biology","date_created":"2024-01-18T08:16:43Z","scopus_import":"1","department":[{"_id":"MaLo"}],"oa":1,"year":"2024","article_processing_charge":"Yes","intvolume":" 103","oa_version":"Published Version","issue":"1","month":"03","author":[{"last_name":"Radler","full_name":"Radler, Philipp","orcid":"0000-0001-9198-2182 ","first_name":"Philipp","id":"40136C2A-F248-11E8-B48F-1D18A9856A87"},{"orcid":"0000-0001-7309-9724","full_name":"Loose, Martin","first_name":"Martin","id":"462D4284-F248-11E8-B48F-1D18A9856A87","last_name":"Loose"}],"publication_status":"published","article_type":"review","ddc":["570"],"doi":"10.1016/j.ejcb.2023.151380","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","publisher":"Elsevier","_id":"14834","status":"public","project":[{"grant_number":"P34607","name":"In vitro reconstitution of bacterial cell division","_id":"fc38323b-9c52-11eb-aca3-ff8afb4a011d"}],"type":"journal_article","date_updated":"2025-09-04T11:45:31Z","pmid":1,"abstract":[{"lang":"eng","text":"Bacteria divide by binary fission. The protein machine responsible for this process is the divisome, a transient assembly of more than 30 proteins in and on the surface of the cytoplasmic membrane. Together, they constrict the cell envelope and remodel the peptidoglycan layer to eventually split the cell into two. For Escherichia coli, most molecular players involved in this process have probably been identified, but obtaining the quantitative information needed for a mechanistic understanding can often not be achieved from experiments in vivo alone. Since the discovery of the Z-ring more than 30 years ago, in vitro reconstitution experiments have been crucial to shed light on molecular processes normally hidden in the complex environment of the living cell. In this review, we summarize how rebuilding the divisome from purified components – or at least parts of it - have been instrumental to obtain the detailed mechanistic understanding of the bacterial cell division machinery that we have today."}],"file_date_updated":"2024-07-16T12:07:20Z","title":"A dynamic duo: Understanding the roles of FtsZ and FtsA for Escherichia coli cell division through in vitro approaches","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"keyword":["Cell Biology","General Medicine","Histology","Pathology and Forensic Medicine"],"language":[{"iso":"eng"}],"fulldoi":"https://doi.org/10.1016/j.ejcb.2023.151380","isi":1,"file":[{"date_created":"2024-07-16T12:07:20Z","relation":"main_file","creator":"dernst","success":1,"file_size":9995304,"checksum":"5d170abbc87585205c010657e4552360","date_updated":"2024-07-16T12:07:20Z","file_name":"2024_EJCB_Radler.pdf","content_type":"application/pdf","access_level":"open_access","file_id":"17265"}],"external_id":{"pmid":["38218128"],"isi":["001166216800001"]},"date_published":"2024-03-01T00:00:00Z","day":"01"},{"external_id":{"pmid":["38194456"],"isi":["001167401000001"]},"fulldoi":"https://doi.org/10.1073/pnas.2307776121","file":[{"creator":"dernst","success":1,"relation":"main_file","date_created":"2025-04-23T13:51:16Z","checksum":"f498c643be81895dd3a69ee90115a782","date_updated":"2025-04-23T13:51:16Z","file_size":3060109,"content_type":"application/pdf","file_name":"2024_PNAS_Clatot.pdf","file_id":"19613","access_level":"open_access"}],"isi":1,"language":[{"iso":"eng"}],"day":"16","date_published":"2024-01-16T00:00:00Z","tmp":{"name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","short":"CC BY-NC-ND (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","image":"/images/cc_by_nc_nd.png"},"pmid":1,"date_updated":"2025-09-04T11:47:47Z","title":"A structurally precise mechanism links an epilepsy-associated KCNC2 potassium channel mutation to interneuron dysfunction","file_date_updated":"2025-04-23T13:51:16Z","abstract":[{"lang":"eng","text":"De novo heterozygous variants in KCNC2 encoding the voltage-gated potassium (K+) channel subunit Kv3.2 are a recently described cause of developmental and epileptic encephalopathy (DEE). A de novo variant in KCNC2 c.374G > A (p.Cys125Tyr) was identified via exome sequencing in a patient with DEE. Relative to wild-type Kv3.2, Kv3.2-p.Cys125Tyr induces K+ currents exhibiting a large hyperpolarizing shift in the voltage dependence of activation, accelerated activation, and delayed deactivation consistent with a relative stabilization of the open conformation, along with increased current density. Leveraging the cryogenic electron microscopy (cryo-EM) structure of Kv3.1, molecular dynamic simulations suggest that a strong π-π stacking interaction between the variant Tyr125 and Tyr156 in the α-6 helix of the T1 domain promotes a relative stabilization of the open conformation of the channel, which underlies the observed gain of function. A multicompartment computational model of a Kv3-expressing parvalbumin-positive cerebral cortex fast-spiking γ-aminobutyric acidergic (GABAergic) interneuron (PV-IN) demonstrates how the Kv3.2-Cys125Tyr variant impairs neuronal excitability and dysregulates inhibition in cerebral cortex circuits to explain the resulting epilepsy."}],"publisher":"National Academy of Sciences","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","doi":"10.1073/pnas.2307776121","project":[{"grant_number":"819603","_id":"0aacfa84-070f-11eb-9043-d7eb2c709234","call_identifier":"H2020","name":"Learning the shape of synaptic plasticity rules for neuronal architectures and function through machine learning."}],"type":"journal_article","_id":"14841","status":"public","publication_status":"published","article_type":"original","author":[{"first_name":"Jerome","full_name":"Clatot, Jerome","last_name":"Clatot"},{"first_name":"Christopher","full_name":"Currin, Christopher","orcid":"0000-0002-4809-5059","id":"e8321fc5-3091-11eb-8a53-83f309a11ac9","last_name":"Currin"},{"first_name":"Qiansheng","full_name":"Liang, Qiansheng","last_name":"Liang"},{"last_name":"Pipatpolkai","full_name":"Pipatpolkai, Tanadet","first_name":"Tanadet"},{"full_name":"Massey, Shavonne L.","first_name":"Shavonne L.","last_name":"Massey"},{"last_name":"Helbig","first_name":"Ingo","full_name":"Helbig, Ingo"},{"full_name":"Delemotte, Lucie","first_name":"Lucie","last_name":"Delemotte"},{"last_name":"Vogels","first_name":"Tim P","full_name":"Vogels, Tim P","orcid":"0000-0003-3295-6181","id":"CB6FF8D2-008F-11EA-8E08-2637E6697425"},{"first_name":"Manuel","full_name":"Covarrubias, Manuel","last_name":"Covarrubias"},{"last_name":"Goldberg","first_name":"Ethan M.","full_name":"Goldberg, Ethan M."}],"ddc":["570"],"article_processing_charge":"Yes (in subscription journal)","oa":1,"year":"2024","month":"01","oa_version":"Published Version","intvolume":" 121","issue":"3","citation":{"ista":"Clatot J, Currin C, Liang Q, Pipatpolkai T, Massey SL, Helbig I, Delemotte L, Vogels TP, Covarrubias M, Goldberg EM. 2024. A structurally precise mechanism links an epilepsy-associated KCNC2 potassium channel mutation to interneuron dysfunction. Proceedings of the National Academy of Sciences of the United States of America. 121(3), e2307776121.","ama":"Clatot J, Currin C, Liang Q, et al. A structurally precise mechanism links an epilepsy-associated KCNC2 potassium channel mutation to interneuron dysfunction. Proceedings of the National Academy of Sciences of the United States of America. 2024;121(3). doi:10.1073/pnas.2307776121","mla":"Clatot, Jerome, et al. “A Structurally Precise Mechanism Links an Epilepsy-Associated KCNC2 Potassium Channel Mutation to Interneuron Dysfunction.” Proceedings of the National Academy of Sciences of the United States of America, vol. 121, no. 3, e2307776121, National Academy of Sciences, 2024, doi:10.1073/pnas.2307776121.","short":"J. Clatot, C. Currin, Q. Liang, T. Pipatpolkai, S.L. Massey, I. Helbig, L. Delemotte, T.P. Vogels, M. Covarrubias, E.M. Goldberg, Proceedings of the National Academy of Sciences of the United States of America 121 (2024).","apa":"Clatot, J., Currin, C., Liang, Q., Pipatpolkai, T., Massey, S. L., Helbig, I., … Goldberg, E. M. (2024). A structurally precise mechanism links an epilepsy-associated KCNC2 potassium channel mutation to interneuron dysfunction. Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences. https://doi.org/10.1073/pnas.2307776121","ieee":"J. Clatot et al., “A structurally precise mechanism links an epilepsy-associated KCNC2 potassium channel mutation to interneuron dysfunction,” Proceedings of the National Academy of Sciences of the United States of America, vol. 121, no. 3. National Academy of Sciences, 2024.","chicago":"Clatot, Jerome, Christopher Currin, Qiansheng Liang, Tanadet Pipatpolkai, Shavonne L. Massey, Ingo Helbig, Lucie Delemotte, Tim P Vogels, Manuel Covarrubias, and Ethan M. Goldberg. “A Structurally Precise Mechanism Links an Epilepsy-Associated KCNC2 Potassium Channel Mutation to Interneuron Dysfunction.” Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences, 2024. https://doi.org/10.1073/pnas.2307776121."},"related_material":{"link":[{"relation":"software","url":"https://github.com/ChrisCurrin/pv-kcnc2 "}]},"has_accepted_license":"1","scopus_import":"1","department":[{"_id":"TiVo"}],"date_created":"2024-01-21T23:00:56Z","publication":"Proceedings of the National Academy of Sciences of the United States of America","acknowledgement":"This work was supported by an ERC Consolidator Grant (SYNAPSEEK) to T.P.V., the NOMIS Foundation through the NOMIS Fellowships program at IST Austria to C.B.C., a Jefferson Synaptic Biology Center Pilot Project Grant to M.C., NIH NINDS U54 NS108874 (PI, Alfred L. George), and NIH NINDS R01 NS122887 to E.M.G. The computations were enabled by resources provided by the Swedish National Infrastructure for Computing (SNIC) at the PDC Center for High-Performance Computing, KTH Royal Institute of Technology, partially funded by the Swedish Research Council through grant agreement no. 2018-05973. We thank Akshay Sridhar for the fruitful discussion of the project.","article_number":"e2307776121","ec_funded":1,"volume":121,"publication_identifier":{"eissn":["1091-6490"]},"OA_type":"hybrid","OA_place":"publisher","quality_controlled":"1"},{"corr_author":"1","citation":{"ista":"Dome T, Volosniev A, Ghazaryan A, Safari L, Schmidt R, Lemeshko M. 2024. Linear rotor in an ideal Bose gas near the threshold for binding. Physical Review B. 109(1), 014102.","ama":"Dome T, Volosniev A, Ghazaryan A, Safari L, Schmidt R, Lemeshko M. Linear rotor in an ideal Bose gas near the threshold for binding. Physical Review B. 2024;109(1). doi:10.1103/PhysRevB.109.014102","mla":"Dome, Tibor, et al. “Linear Rotor in an Ideal Bose Gas near the Threshold for Binding.” Physical Review B, vol. 109, no. 1, 014102, American Physical Society, 2024, doi:10.1103/PhysRevB.109.014102.","short":"T. Dome, A. Volosniev, A. Ghazaryan, L. Safari, R. Schmidt, M. Lemeshko, Physical Review B 109 (2024).","apa":"Dome, T., Volosniev, A., Ghazaryan, A., Safari, L., Schmidt, R., & Lemeshko, M. (2024). Linear rotor in an ideal Bose gas near the threshold for binding. Physical Review B. American Physical Society. https://doi.org/10.1103/PhysRevB.109.014102","ieee":"T. Dome, A. Volosniev, A. Ghazaryan, L. Safari, R. Schmidt, and M. Lemeshko, “Linear rotor in an ideal Bose gas near the threshold for binding,” Physical Review B, vol. 109, no. 1. American Physical Society, 2024.","chicago":"Dome, Tibor, Artem Volosniev, Areg Ghazaryan, Laleh Safari, Richard Schmidt, and Mikhail Lemeshko. “Linear Rotor in an Ideal Bose Gas near the Threshold for Binding.” Physical Review B. American Physical Society, 2024. https://doi.org/10.1103/PhysRevB.109.014102."},"publication":"Physical Review B","scopus_import":"1","department":[{"_id":"MiLe"}],"date_created":"2024-01-21T23:00:57Z","acknowledgement":"We would like to thank G. Bighin, I. Cherepanov, E. Paerschke, and E. Yakaboylu for insightful discussions on a wide range of topics. This work has been supported by the European Research Council (ERC) Starting Grant No. 801770 (ANGULON). A.G. and A.G.V. acknowledge support from the European Union’s Horizon 2020 research and innovation\r\nprogram under the Marie Skłodowska-Curie Grant Agreement No. 754411. Numerical calculations were performed on the Euler cluster managed by the HPC team at ETH Zurich.\r\nR.S. acknowledges support by the Deutsche Forschungsgemeinschaft under Germany’s Excellence Strategy Grant No. EXC 2181/1-390900948 (the Heidelberg STRUCTURES Excellence Cluster). T.D. acknowledges support from the Isaac Newton Studentship and the Science and Technology Facilities Council under Grant No. ST/V50659X/1.","article_number":"014102","OA_type":"green","arxiv":1,"OA_place":"repository","quality_controlled":"1","ec_funded":1,"volume":109,"publication_identifier":{"issn":["2469-9950"],"eissn":["2469-9969"]},"publication_status":"published","article_type":"original","author":[{"last_name":"Dome","id":"7e3293e2-b9dc-11ee-97a9-cd73400f6994","first_name":"Tibor","orcid":"0000-0003-2586-3702","full_name":"Dome, Tibor"},{"orcid":"0000-0003-0393-5525","full_name":"Volosniev, Artem","first_name":"Artem","id":"37D278BC-F248-11E8-B48F-1D18A9856A87","last_name":"Volosniev"},{"last_name":"Ghazaryan","id":"4AF46FD6-F248-11E8-B48F-1D18A9856A87","first_name":"Areg","full_name":"Ghazaryan, Areg","orcid":"0000-0001-9666-3543"},{"id":"3C325E5E-F248-11E8-B48F-1D18A9856A87","first_name":"Laleh","full_name":"Safari, Laleh","last_name":"Safari"},{"full_name":"Schmidt, Richard","first_name":"Richard","last_name":"Schmidt"},{"last_name":"Lemeshko","full_name":"Lemeshko, Mikhail","orcid":"0000-0002-6990-7802","first_name":"Mikhail","id":"37CB05FA-F248-11E8-B48F-1D18A9856A87"}],"article_processing_charge":"No","year":"2024","oa":1,"oa_version":"Preprint","main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2308.03852","open_access":"1"}],"intvolume":" 109","issue":"1","month":"01","date_updated":"2025-09-04T11:49:14Z","abstract":[{"text":"We study a linear rotor in a bosonic bath within the angulon formalism. Our focus is on systems where isotropic or anisotropic impurity-boson interactions support a shallow bound state. To study the fate of the angulon in the vicinity of bound-state formation, we formulate a beyond-linear-coupling angulon Hamiltonian. First, we use it to study attractive, spherically symmetric impurity-boson interactions for which the linear rotor can be mapped onto a static impurity. The well-known polaron formalism provides an adequate description in this limit. Second, we consider anisotropic potentials, and show that the presence of a shallow bound state with pronounced anisotropic character leads to a many-body instability that washes out the angulon dynamics.","lang":"eng"}],"title":"Linear rotor in an ideal Bose gas near the threshold for binding","doi":"10.1103/PhysRevB.109.014102","publisher":"American Physical Society","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","project":[{"call_identifier":"H2020","name":"Angulon: physics and applications of a new quasiparticle","_id":"2688CF98-B435-11E9-9278-68D0E5697425","grant_number":"801770"},{"grant_number":"754411","_id":"260C2330-B435-11E9-9278-68D0E5697425","name":"ISTplus - Postdoctoral Fellowships","call_identifier":"H2020"}],"type":"journal_article","_id":"14845","status":"public","isi":1,"fulldoi":"https://doi.org/10.1103/PhysRevB.109.014102","language":[{"iso":"eng"}],"external_id":{"arxiv":["2308.03852"],"isi":["001172754500002"]},"day":"01","date_published":"2024-01-01T00:00:00Z"},{"keyword":["General Earth and Planetary Sciences","General Environmental Science"],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"day":"01","date_published":"2024-01-01T00:00:00Z","language":[{"iso":"ger"}],"fulldoi":"https://doi.org/10.1002/piuz.202301690","file":[{"file_name":"2024_PhysikZeit_Karle.pdf","content_type":"application/pdf","access_level":"open_access","file_id":"14878","date_created":"2024-01-23T12:18:07Z","relation":"main_file","creator":"dernst","success":1,"file_size":1155244,"date_updated":"2024-01-23T12:18:07Z","checksum":"3051dadcf9bc57da97e36b647c596ab1"}],"_id":"14851","status":"public","type":"journal_article","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","publisher":"Wiley","doi":"10.1002/piuz.202301690","title":"Die faszinierende Topologie rotierender Quanten","abstract":[{"text":"Die Quantenrotation ist ein spannendes Phänomen, das in vielen verschiedenen Systemen auftritt, von Molekülen und Atomen bis hin zu subatomaren Teilchen wie Neutronen und Protonen. Durch den Einsatz von starken Laserpulsen ist es möglich, die mathematisch anspruchsvolle Topologie der Rotation von Molekülen aufzudecken und topologisch geschützte Zustände zu erzeugen, die unerwartetes Verhalten zeigen. Diese Entdeckungen könnten Auswirkungen auf die Molekülphysik und physikalische Chemie haben und die Entwicklung neuer Technologien ermöglichen. Die Verbindung von Quantenrotation und Topologie stellt ein aufregendes, interdisziplinäres Forschungsfeld dar und bietet neue Wege zur Kontrolle und Nutzung von quantenmechanischen Phänomenen.","lang":"ger"}],"file_date_updated":"2024-01-23T12:18:07Z","date_updated":"2026-04-07T11:48:52Z","page":"28-33","month":"01","oa_version":"Published Version","issue":"1","intvolume":" 55","year":"2024","oa":1,"article_processing_charge":"Yes (via OA deal)","ddc":["530"],"author":[{"first_name":"Volker","orcid":"0000-0002-6963-0129","full_name":"Karle, Volker","id":"D7C012AE-D7ED-11E9-95E8-1EC5E5697425","last_name":"Karle"},{"id":"37CB05FA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6990-7802","full_name":"Lemeshko, Mikhail","first_name":"Mikhail","last_name":"Lemeshko"}],"publication_status":"published","article_type":"original","volume":55,"publication_identifier":{"issn":["0031-9252"],"eissn":["1521-3943"]},"quality_controlled":"1","date_created":"2024-01-22T08:19:36Z","department":[{"_id":"MiLe"}],"publication":"Physik in unserer Zeit","citation":{"chicago":"Karle, Volker, and Mikhail Lemeshko. “Die faszinierende Topologie rotierender Quanten.” Physik in unserer Zeit. Wiley, 2024. https://doi.org/10.1002/piuz.202301690.","apa":"Karle, V., & Lemeshko, M. (2024). Die faszinierende Topologie rotierender Quanten. Physik in unserer Zeit. Wiley. https://doi.org/10.1002/piuz.202301690","ieee":"V. Karle and M. Lemeshko, “Die faszinierende Topologie rotierender Quanten,” Physik in unserer Zeit, vol. 55, no. 1. Wiley, pp. 28–33, 2024.","short":"V. Karle, M. Lemeshko, Physik in unserer Zeit 55 (2024) 28–33.","ama":"Karle V, Lemeshko M. Die faszinierende Topologie rotierender Quanten. Physik in unserer Zeit. 2024;55(1):28-33. doi:10.1002/piuz.202301690","mla":"Karle, Volker, and Mikhail Lemeshko. “Die faszinierende Topologie rotierender Quanten.” Physik in unserer Zeit, vol. 55, no. 1, Wiley, 2024, pp. 28–33, doi:10.1002/piuz.202301690.","ista":"Karle V, Lemeshko M. 2024. Die faszinierende Topologie rotierender Quanten. Physik in unserer Zeit. 55(1), 28–33."},"corr_author":"1","has_accepted_license":"1","related_material":{"record":[{"id":"19393","relation":"dissertation_contains","status":"public"}]}},{"acknowledgement":"We thank the anonymous referee for the constructive feedback that helped to improve the manuscript. We thank Michael Maseda, Daniel Schaerer, Charlotte Simmonds, and Rashmi Gottumukkala for useful comments and productive discussions. We also thank the organizers and participants of the 24th MUSE Science Busy Week in Leiden. IGK acknowledges an Excellence Master Fellowship granted by the Faculty of Science of the University of Geneva. This work has received funding from the Swiss State Secretariat for Education, Research and Innovation (SERI) under contract number MB22.00072, as well as from the Swiss National Science Foundation (SNSF) through project grant number 200020_207349 and SNSF Professorship grant number 190079. The Cosmic Dawn Center (DAWN) is funded by the Danish National Research Foundation under grant number 140. This paper is based on observations collected at the European Organisation for Astronomical Research in the Southern Hemisphere under ESO programmes 094.A-0289(B), 095.A-0010(A), 096.A-0045(A), 096.A-0045(B), 094.A-0205, 095.A-0240, 096.A-0090, 097.A-0160, and 098.A-0017. We made extensive use of several open-source software packages and we are thankful to the respective authors for sharing their work: NUMPY (Harris et al. 2020), ASTROPY (Astropy Collaboration 2022), MATPLOTLIB (Hunter 2007), IPYTHON (Perez & Granger 2007), and TOPCAT (Taylor 2005).","volume":527,"publication_identifier":{"eissn":["1365-2966"],"issn":["0035-8711"]},"quality_controlled":"1","arxiv":1,"corr_author":"1","citation":{"ista":"Kramarenko I, Kerutt J, Verhamme A, Oesch PA, Barrufet L, Matthee JJ, Kusakabe H, Goovaerts I, Thai TT. 2024. Linking UV spectral properties of MUSE Ly α emitters at z ≳ 3 to Lyman continuum escape. Monthly Notices of the Royal Astronomical Society. 527(4), 9853–9871.","ama":"Kramarenko I, Kerutt J, Verhamme A, et al. Linking UV spectral properties of MUSE Ly α emitters at z ≳ 3 to Lyman continuum escape. Monthly Notices of the Royal Astronomical Society. 2024;527(4):9853-9871. doi:10.1093/mnras/stad3853","mla":"Kramarenko, Ivan, et al. “Linking UV Spectral Properties of MUSE Ly α Emitters at z ≳ 3 to Lyman Continuum Escape.” Monthly Notices of the Royal Astronomical Society, vol. 527, no. 4, Oxford University Press, 2024, pp. 9853–71, doi:10.1093/mnras/stad3853.","ieee":"I. Kramarenko et al., “Linking UV spectral properties of MUSE Ly α emitters at z ≳ 3 to Lyman continuum escape,” Monthly Notices of the Royal Astronomical Society, vol. 527, no. 4. Oxford University Press, pp. 9853–9871, 2024.","apa":"Kramarenko, I., Kerutt, J., Verhamme, A., Oesch, P. A., Barrufet, L., Matthee, J. J., … Thai, T. T. (2024). Linking UV spectral properties of MUSE Ly α emitters at z ≳ 3 to Lyman continuum escape. Monthly Notices of the Royal Astronomical Society. Oxford University Press. https://doi.org/10.1093/mnras/stad3853","short":"I. Kramarenko, J. Kerutt, A. Verhamme, P.A. Oesch, L. Barrufet, J.J. Matthee, H. Kusakabe, I. Goovaerts, T.T. Thai, Monthly Notices of the Royal Astronomical Society 527 (2024) 9853–9871.","chicago":"Kramarenko, Ivan, J Kerutt, A Verhamme, P A Oesch, L Barrufet, Jorryt J Matthee, H Kusakabe, I Goovaerts, and T T Thai. “Linking UV Spectral Properties of MUSE Ly α Emitters at z ≳ 3 to Lyman Continuum Escape.” Monthly Notices of the Royal Astronomical Society. Oxford University Press, 2024. https://doi.org/10.1093/mnras/stad3853."},"has_accepted_license":"1","scopus_import":"1","department":[{"_id":"GradSch"},{"_id":"JoMa"}],"date_created":"2024-01-22T08:22:17Z","publication":"Monthly Notices of the Royal Astronomical Society","article_processing_charge":"Yes","year":"2024","oa":1,"month":"02","issue":"4","oa_version":"Published Version","intvolume":" 527","article_type":"original","publication_status":"published","author":[{"last_name":"Kramarenko","first_name":"Ivan","orcid":"0000-0001-5346-6048","full_name":"Kramarenko, Ivan","id":"9a9394cb-3200-11ee-973b-f5ba2a8b16e4"},{"first_name":"J","full_name":"Kerutt, J","last_name":"Kerutt"},{"last_name":"Verhamme","full_name":"Verhamme, A","first_name":"A"},{"last_name":"Oesch","full_name":"Oesch, P A","first_name":"P A"},{"last_name":"Barrufet","full_name":"Barrufet, L","first_name":"L"},{"last_name":"Matthee","first_name":"Jorryt J","full_name":"Matthee, Jorryt J","orcid":"0000-0003-2871-127X","id":"7439a258-f3c0-11ec-9501-9df22fe06720"},{"last_name":"Kusakabe","full_name":"Kusakabe, H","first_name":"H"},{"full_name":"Goovaerts, I","first_name":"I","last_name":"Goovaerts"},{"last_name":"Thai","first_name":"T T","full_name":"Thai, T T"}],"ddc":["520"],"publisher":"Oxford University Press","DOAJ_listed":"1","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","doi":"10.1093/mnras/stad3853","type":"journal_article","status":"public","_id":"14852","page":"9853-9871","date_updated":"2025-09-04T11:51:50Z","title":"Linking UV spectral properties of MUSE Ly α emitters at z ≳ 3 to Lyman continuum escape","file_date_updated":"2024-01-23T12:30:45Z","abstract":[{"text":"The physical conditions giving rise to high escape fractions of ionizing radiation (LyC fesc) in star-forming galaxies – most likely protagonists of cosmic reionization – are not yet fully understood. Using the VLT/MUSE observations of ∼1400 Ly α emitters at 2.9 < z < 6.7, we compare stacked rest-frame UV spectra of candidates for LyC leakers and non-leakers selected based on their Ly α profiles. We find that the stacks of potential LyC leakers, i.e. galaxies with narrow, symmetric Ly α profiles with small peak separation, generally show (i) strong nebular O iii]λ1666, [Si iii]λ1883, and [C iii]λ1907 +C iii]λ1909 emission, indicating a high-ionization state of the interstellar medium (ISM); (ii) high equivalent widths of He iiλ1640 (∼1 − 3 Å), suggesting the presence of hard ionizing radiation fields; (iii) Si ii*λ1533 emission, revealing substantial amounts of neutral hydrogen off the line of sight; (iv) high C ivλλ1548,1550 to [C iii]λ1907 +C iii]λ1909 ratios (C iv/C iii] ≳0.75) , signalling the presence of low column density channels in the ISM. In contrast, the stacks with broad, asymmetric Ly α profiles with large peak separation show weak nebular emission lines, low He iiλ1640 equivalent widths (≲1 Å), and low C iv/C iii] (≲0.25), implying low-ionization states and high-neutral hydrogen column densities. Our results suggest that C iv/C iii] might be sensitive to the physical conditions that govern LyC photon escape, providing a promising tool for identification of ionizing sources among star-forming galaxies in the epoch of reionization.","lang":"eng"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"keyword":["Space and Planetary Science","Astronomy and Astrophysics"],"external_id":{"isi":["001133672400004"],"arxiv":["2305.07044"]},"fulldoi":"https://doi.org/10.1093/mnras/stad3853","file":[{"file_size":4521738,"checksum":"9d02df4035c4951cf63dee0db1e462e9","date_updated":"2024-01-23T12:30:45Z","relation":"main_file","date_created":"2024-01-23T12:30:45Z","creator":"dernst","success":1,"access_level":"open_access","file_id":"14879","file_name":"2024_MNAstronomSoc_Kramarenko.pdf","content_type":"application/pdf"}],"isi":1,"language":[{"iso":"eng"}],"date_published":"2024-02-01T00:00:00Z","day":"01"},{"project":[{"grant_number":"F6504","name":"Taming Complexity in Partial Differential Systems","_id":"fc31cba2-9c52-11eb-aca3-ff467d239cd2"}],"type":"journal_article","status":"public","_id":"14884","doi":"10.1007/s00332-023-10005-3","publisher":"Springer Nature","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","abstract":[{"lang":"eng","text":"We perform a stochastic homogenization analysis for composite materials exhibiting a random microstructure. Under the assumptions of stationarity and ergodicity, we characterize the Gamma-limit of a micromagnetic energy functional defined on magnetizations taking value in the unit sphere and including both symmetric and antisymmetric exchange contributions. This Gamma-limit corresponds to a micromagnetic energy functional with homogeneous coefficients. We provide explicit formulas for the effective magnetic properties of the composite material in terms of homogenization correctors. Additionally, the variational analysis of the two exchange energy terms is performed in the more general setting of functionals defined on manifold-valued maps with Sobolev regularity, in the case in which the target manifold is a bounded, orientable smooth surface with tubular neighborhood of uniform thickness. Eventually, we present an explicit characterization of minimizers of the effective exchange in the case of magnetic multilayers, providing quantitative evidence of Dzyaloshinskii’s predictions on the emergence of helical structures in composite ferromagnetic materials with stochastic microstructure."}],"title":"Stochastic homogenization of micromagnetic energies and emergence of magnetic skyrmions","date_updated":"2025-09-04T11:54:01Z","day":"23","date_published":"2024-01-23T00:00:00Z","isi":1,"fulldoi":"https://doi.org/10.1007/s00332-023-10005-3","language":[{"iso":"eng"}],"external_id":{"arxiv":["2306.05151"],"isi":["001147480200001"]},"quality_controlled":"1","arxiv":1,"publication_identifier":{"issn":["0938-8974"],"eissn":["1432-1467"]},"volume":34,"acknowledgement":"All authors acknowledge support of the Austrian Science Fund (FWF) through the SFB project F65. The research of E. Davoli and L. D’Elia has additionally been supported by the FWF through grants V662, Y1292, and P35359, as well as from OeAD through the WTZ grant CZ09/2023.","article_number":"30","publication":"Journal of Nonlinear Science","department":[{"_id":"JuFi"}],"scopus_import":"1","date_created":"2024-01-28T23:01:42Z","citation":{"ama":"Davoli E, D’Elia L, Ingmanns J. Stochastic homogenization of micromagnetic energies and emergence of magnetic skyrmions. Journal of Nonlinear Science. 2024;34(2). doi:10.1007/s00332-023-10005-3","mla":"Davoli, Elisa, et al. “Stochastic Homogenization of Micromagnetic Energies and Emergence of Magnetic Skyrmions.” Journal of Nonlinear Science, vol. 34, no. 2, 30, Springer Nature, 2024, doi:10.1007/s00332-023-10005-3.","ista":"Davoli E, D’Elia L, Ingmanns J. 2024. Stochastic homogenization of micromagnetic energies and emergence of magnetic skyrmions. Journal of Nonlinear Science. 34(2), 30.","chicago":"Davoli, Elisa, Lorenza D’Elia, and Jonas Ingmanns. “Stochastic Homogenization of Micromagnetic Energies and Emergence of Magnetic Skyrmions.” Journal of Nonlinear Science. Springer Nature, 2024. https://doi.org/10.1007/s00332-023-10005-3.","ieee":"E. Davoli, L. D’Elia, and J. Ingmanns, “Stochastic homogenization of micromagnetic energies and emergence of magnetic skyrmions,” Journal of Nonlinear Science, vol. 34, no. 2. Springer Nature, 2024.","apa":"Davoli, E., D’Elia, L., & Ingmanns, J. (2024). Stochastic homogenization of micromagnetic energies and emergence of magnetic skyrmions. Journal of Nonlinear Science. Springer Nature. https://doi.org/10.1007/s00332-023-10005-3","short":"E. Davoli, L. D’Elia, J. Ingmanns, Journal of Nonlinear Science 34 (2024)."},"main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2306.05151"}],"issue":"2","intvolume":" 34","oa_version":"Preprint","month":"01","article_processing_charge":"No","year":"2024","oa":1,"publication_status":"published","article_type":"original","author":[{"last_name":"Davoli","full_name":"Davoli, Elisa","first_name":"Elisa"},{"first_name":"Lorenza","full_name":"D’Elia, Lorenza","last_name":"D’Elia"},{"last_name":"Ingmanns","id":"71523d30-15b2-11ec-abd3-f80aa909d6b0","full_name":"Ingmanns, Jonas","first_name":"Jonas"}]},{"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"external_id":{"isi":["001146838000001"]},"language":[{"iso":"eng"}],"file":[{"file_id":"14943","access_level":"open_access","file_name":"2024_JGRAtmospheres_Shaw.pdf","content_type":"application/pdf","date_updated":"2024-02-06T08:38:27Z","checksum":"cad5b93caadb40c14e5faedc34f7bba7","file_size":7481087,"creator":"dernst","success":1,"relation":"main_file","date_created":"2024-02-06T08:38:27Z"}],"fulldoi":"https://doi.org/10.1029/2023JD040214","isi":1,"day":"28","date_published":"2024-01-28T00:00:00Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","publisher":"Wiley","doi":"10.1029/2023JD040214","_id":"14885","status":"public","type":"journal_article","date_updated":"2025-09-04T11:58:38Z","title":"Local controls on near-surface glacier cooling under warm atmospheric conditions","abstract":[{"text":"The near-surface boundary layer can mediate the response of mountain glaciers to external climate, cooling the overlying air and promoting a density-driven glacier wind. The fundamental processes are conceptually well understood, though the magnitudes of cooling and presence of glacier winds are poorly quantified in space and time, increasing the forcing uncertainty for melt models. We utilize a new data set of on-glacier meteorological measurements on three neighboring glaciers in the Swiss Alps to explore their distinct response to regional climate under the extreme 2022 summer. We find that synoptic wind origins and local terrain modifications, not only glacier size, play an important role in the ability of a glacier to cool the near-surface air. Warm air intrusions from valley or synoptically-driven winds onto the glacier can occur between ∼19% and 64% of the time and contribute between 3% and 81% of the total sensible heat flux to the surface during warm afternoon hours, depending on the fetch of the glacier flowline and its susceptibility to boundary layer erosion. In the context of extreme summer warmth, indicative of future conditions, the boundary layer cooling (up to 6.5°C cooler than its surroundings) and resultant katabatic wind flow are highly heterogeneous between the study glaciers, highlighting the complex and likely non-linear response of glaciers to an uncertain future.","lang":"eng"}],"file_date_updated":"2024-02-06T08:38:27Z","year":"2024","oa":1,"article_processing_charge":"Yes (in subscription journal)","month":"01","intvolume":" 129","issue":"2","oa_version":"Published Version","author":[{"orcid":"0000-0001-7640-6152","full_name":"Shaw, Thomas","first_name":"Thomas","id":"3caa3f91-1f03-11ee-96ce-e0e553054d6e","last_name":"Shaw"},{"full_name":"Buri, Pascal","first_name":"Pascal","id":"317987aa-9421-11ee-ac5a-b941b041abba","last_name":"Buri"},{"last_name":"Mccarthy","id":"22a2674a-61ce-11ee-94b5-d18813baf16f","full_name":"Mccarthy, Michael","first_name":"Michael"},{"first_name":"Evan S.","full_name":"Miles, Evan S.","last_name":"Miles"},{"id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","orcid":"0000-0002-5554-8087","full_name":"Pellicciotti, Francesca","first_name":"Francesca","last_name":"Pellicciotti"}],"article_type":"original","publication_status":"published","ddc":["550"],"article_number":"e2023JD040214","acknowledgement":"This project has received funding from the European Union's Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie grant agreement No. 101026058. The authors acknowledge the invaluable field assistance of Marta Corrà, Achille Jouberton, Marin Kneib, Stefan Fugger, Celine Ducret and Alexander Groos. The authors would also like to thank Luca Carturan for advice regarding AWS setup and maintenance and Simone Fatichi for provision and support in the use of the Tethys-Chloris model. Open access funding provided by ETH-Bereich Forschungsanstalten.","volume":129,"publication_identifier":{"issn":["2169-897X"],"eissn":["2169-8996"]},"quality_controlled":"1","citation":{"chicago":"Shaw, Thomas, Pascal Buri, Michael McCarthy, Evan S. Miles, and Francesca Pellicciotti. “Local Controls on Near-Surface Glacier Cooling under Warm Atmospheric Conditions.” Journal of Geophysical Research: Atmospheres. Wiley, 2024. https://doi.org/10.1029/2023JD040214.","short":"T. Shaw, P. Buri, M. McCarthy, E.S. Miles, F. Pellicciotti, Journal of Geophysical Research: Atmospheres 129 (2024).","apa":"Shaw, T., Buri, P., McCarthy, M., Miles, E. S., & Pellicciotti, F. (2024). Local controls on near-surface glacier cooling under warm atmospheric conditions. Journal of Geophysical Research: Atmospheres. Wiley. https://doi.org/10.1029/2023JD040214","ieee":"T. Shaw, P. Buri, M. McCarthy, E. S. Miles, and F. Pellicciotti, “Local controls on near-surface glacier cooling under warm atmospheric conditions,” Journal of Geophysical Research: Atmospheres, vol. 129, no. 2. Wiley, 2024.","mla":"Shaw, Thomas, et al. “Local Controls on Near-Surface Glacier Cooling under Warm Atmospheric Conditions.” Journal of Geophysical Research: Atmospheres, vol. 129, no. 2, e2023JD040214, Wiley, 2024, doi:10.1029/2023JD040214.","ama":"Shaw T, Buri P, McCarthy M, Miles ES, Pellicciotti F. Local controls on near-surface glacier cooling under warm atmospheric conditions. Journal of Geophysical Research: Atmospheres. 2024;129(2). doi:10.1029/2023JD040214","ista":"Shaw T, Buri P, McCarthy M, Miles ES, Pellicciotti F. 2024. Local controls on near-surface glacier cooling under warm atmospheric conditions. Journal of Geophysical Research: Atmospheres. 129(2), e2023JD040214."},"corr_author":"1","has_accepted_license":"1","related_material":{"record":[{"id":"14919","relation":"research_data","status":"public"}]},"date_created":"2024-01-28T23:01:42Z","scopus_import":"1","department":[{"_id":"FrPe"}],"publication":"Journal of Geophysical Research: Atmospheres"},{"day":"11","date_published":"2024-01-11T00:00:00Z","language":[{"iso":"eng"}],"file":[{"date_created":"2024-01-31T11:59:30Z","relation":"main_file","success":1,"creator":"dernst","file_size":2863627,"checksum":"42d58f93ae74e7f2c4de058ef75ff8b2","date_updated":"2024-01-31T11:59:30Z","content_type":"application/pdf","file_name":"2024_PhysicalReviewResearch_Lorenc.pdf","access_level":"open_access","file_id":"14918"}],"fulldoi":"https://doi.org/10.1103/PhysRevResearch.6.013042","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"title":"Dispersive effects in ultrafast nonlinear phenomena: The case of optical Kerr effect","abstract":[{"text":"It is a basic principle that an effect cannot come before the cause. Dispersive relations that follow from this fundamental fact have proven to be an indispensable tool in physics and engineering. They are most powerful in the domain of linear response where they are known as Kramers-Kronig relations. However, when it comes to nonlinear phenomena the implications of causality are much less explored, apart from several notable exceptions. Here in this paper we demonstrate how to apply the dispersive formalism to analyze the ultrafast nonlinear response in the context of the paradigmatic nonlinear Kerr effect. We find that the requirement of causality introduces a noticeable effect even under assumption that Kerr effect is mediated by quasi-instantaneous off-resonant electronic hyperpolarizability. We confirm this by experimentally measuring the time-resolved Kerr dynamics in GaAs by means of a hybrid pump-probe Mach-Zehnder interferometer and demonstrate the presence of an intrinsic lagging between amplitude and phase responses as predicted by dispersive analysis. Our results describe a general property of the time-resolved nonlinear processes thereby highlighting the importance of accounting for dispersive effects in the nonlinear optical processes involving ultrashort pulses.","lang":"eng"}],"file_date_updated":"2024-01-31T11:59:30Z","date_updated":"2025-05-08T10:16:34Z","status":"public","_id":"14886","type":"journal_article","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","DOAJ_listed":"1","publisher":"American Physical Society","doi":"10.1103/PhysRevResearch.6.013042","ddc":["530"],"author":[{"full_name":"Lorenc, Dusan","first_name":"Dusan","id":"40D8A3E6-F248-11E8-B48F-1D18A9856A87","last_name":"Lorenc"},{"id":"45E67A2A-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-7183-5203","full_name":"Alpichshev, Zhanybek","first_name":"Zhanybek","last_name":"Alpichshev"}],"article_type":"original","publication_status":"published","month":"01","APC_amount":"2982,14 EUR","oa_version":"Published Version","issue":"1","intvolume":" 6","year":"2024","oa":1,"article_processing_charge":"Yes","date_created":"2024-01-28T23:01:42Z","scopus_import":"1","department":[{"_id":"ZhAl"}],"publication":"Physical Review Research","citation":{"chicago":"Lorenc, Dusan, and Zhanybek Alpichshev. “Dispersive Effects in Ultrafast Nonlinear Phenomena: The Case of Optical Kerr Effect.” Physical Review Research. American Physical Society, 2024. https://doi.org/10.1103/PhysRevResearch.6.013042.","apa":"Lorenc, D., & Alpichshev, Z. (2024). Dispersive effects in ultrafast nonlinear phenomena: The case of optical Kerr effect. Physical Review Research. American Physical Society. https://doi.org/10.1103/PhysRevResearch.6.013042","ieee":"D. Lorenc and Z. Alpichshev, “Dispersive effects in ultrafast nonlinear phenomena: The case of optical Kerr effect,” Physical Review Research, vol. 6, no. 1. American Physical Society, 2024.","short":"D. Lorenc, Z. Alpichshev, Physical Review Research 6 (2024).","ama":"Lorenc D, Alpichshev Z. Dispersive effects in ultrafast nonlinear phenomena: The case of optical Kerr effect. Physical Review Research. 2024;6(1). doi:10.1103/PhysRevResearch.6.013042","mla":"Lorenc, Dusan, and Zhanybek Alpichshev. “Dispersive Effects in Ultrafast Nonlinear Phenomena: The Case of Optical Kerr Effect.” Physical Review Research, vol. 6, no. 1, 013042, American Physical Society, 2024, doi:10.1103/PhysRevResearch.6.013042.","ista":"Lorenc D, Alpichshev Z. 2024. Dispersive effects in ultrafast nonlinear phenomena: The case of optical Kerr effect. Physical Review Research. 6(1), 013042."},"corr_author":"1","has_accepted_license":"1","publication_identifier":{"eissn":["2643-1564"]},"volume":6,"quality_controlled":"1","OA_place":"publisher","OA_type":"gold","article_number":"013042","acknowledgement":"The work was supported by the Institute of Science and Technology Austria (ISTA). We thank Prof. John M. Dudley, Dr. Ugur Sezer, and Dr. Artem Volosniev for valuable discussions."},{"day":"01","date_published":"2024-03-01T00:00:00Z","external_id":{"isi":["001145442300001"],"pmid":["38243089"]},"language":[{"iso":"eng"}],"fulldoi":"https://doi.org/10.1038/s41593-023-01551-w","isi":1,"file":[{"access_level":"open_access","file_id":"17268","content_type":"application/pdf","file_name":"2024_NatureNeuroscience_FeitosaTome.pdf","file_size":15830346,"checksum":"c509fcad757e4c1c153e857e55c20083","date_updated":"2024-07-16T12:15:19Z","relation":"main_file","date_created":"2024-07-16T12:15:19Z","creator":"dernst","success":1}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"title":"Dynamic and selective engrams emerge with memory consolidation","abstract":[{"lang":"eng","text":"Episodic memories are encoded by experience-activated neuronal ensembles that remain necessary and sufficient for recall. However, the temporal evolution of memory engrams after initial encoding is unclear. In this study, we employed computational and experimental approaches to examine how the neural composition and selectivity of engrams change with memory consolidation. Our spiking neural network model yielded testable predictions: memories transition from unselective to selective as neurons drop out of and drop into engrams; inhibitory activity during recall is essential for memory selectivity; and inhibitory synaptic plasticity during memory consolidation is critical for engrams to become selective. Using activity-dependent labeling, longitudinal calcium imaging and a combination of optogenetic and chemogenetic manipulations in mouse dentate gyrus, we conducted contextual fear conditioning experiments that supported our model’s predictions. Our results reveal that memory engrams are dynamic and that changes in engram composition mediated by inhibitory plasticity are crucial for the emergence of memory selectivity."}],"file_date_updated":"2024-07-16T12:15:19Z","pmid":1,"date_updated":"2025-04-23T07:40:21Z","page":"561-572","_id":"14887","status":"public","type":"journal_article","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"Springer Nature","doi":"10.1038/s41593-023-01551-w","ddc":["570"],"author":[{"last_name":"Feitosa Tomé","first_name":"Douglas","full_name":"Feitosa Tomé, Douglas","id":"0eed2d40-3d48-11ec-8d38-f789cc2e40b2"},{"first_name":"Ying","full_name":"Zhang, Ying","last_name":"Zhang"},{"first_name":"Tomomi","full_name":"Aida, Tomomi","last_name":"Aida"},{"last_name":"Mosto","first_name":"Olivia","full_name":"Mosto, Olivia"},{"last_name":"Lu","full_name":"Lu, Yifeng","first_name":"Yifeng"},{"last_name":"Chen","first_name":"Mandy","full_name":"Chen, Mandy"},{"last_name":"Sadeh","full_name":"Sadeh, Sadra","first_name":"Sadra"},{"first_name":"Dheeraj S.","full_name":"Roy, Dheeraj S.","last_name":"Roy"},{"full_name":"Clopath, Claudia","first_name":"Claudia","last_name":"Clopath"}],"publication_status":"published","article_type":"original","month":"03","intvolume":" 27","oa_version":"Published Version","year":"2024","oa":1,"article_processing_charge":"Yes (in subscription journal)","date_created":"2024-01-28T23:01:43Z","scopus_import":"1","department":[{"_id":"TiVo"}],"publication":"Nature Neuroscience","citation":{"mla":"Feitosa Tomé, Douglas, et al. “Dynamic and Selective Engrams Emerge with Memory Consolidation.” Nature Neuroscience, vol. 27, Springer Nature, 2024, pp. 561–72, doi:10.1038/s41593-023-01551-w.","ama":"Feitosa Tomé D, Zhang Y, Aida T, et al. Dynamic and selective engrams emerge with memory consolidation. Nature Neuroscience. 2024;27:561-572. doi:10.1038/s41593-023-01551-w","ista":"Feitosa Tomé D, Zhang Y, Aida T, Mosto O, Lu Y, Chen M, Sadeh S, Roy DS, Clopath C. 2024. Dynamic and selective engrams emerge with memory consolidation. Nature Neuroscience. 27, 561–572.","chicago":"Feitosa Tomé, Douglas, Ying Zhang, Tomomi Aida, Olivia Mosto, Yifeng Lu, Mandy Chen, Sadra Sadeh, Dheeraj S. Roy, and Claudia Clopath. “Dynamic and Selective Engrams Emerge with Memory Consolidation.” Nature Neuroscience. Springer Nature, 2024. https://doi.org/10.1038/s41593-023-01551-w.","short":"D. Feitosa Tomé, Y. Zhang, T. Aida, O. Mosto, Y. Lu, M. Chen, S. Sadeh, D.S. Roy, C. Clopath, Nature Neuroscience 27 (2024) 561–572.","ieee":"D. Feitosa Tomé et al., “Dynamic and selective engrams emerge with memory consolidation,” Nature Neuroscience, vol. 27. Springer Nature, pp. 561–572, 2024.","apa":"Feitosa Tomé, D., Zhang, Y., Aida, T., Mosto, O., Lu, Y., Chen, M., … Clopath, C. (2024). Dynamic and selective engrams emerge with memory consolidation. Nature Neuroscience. Springer Nature. https://doi.org/10.1038/s41593-023-01551-w"},"corr_author":"1","has_accepted_license":"1","related_material":{"record":[{"status":"public","relation":"research_data","id":"14892"}]},"volume":27,"publication_identifier":{"eissn":["1546-1726"],"issn":["1097-6256"]},"quality_controlled":"1","acknowledgement":"We thank S. Erisken from Inscopix for helping us establish in vivo one-photon calcium imaging for this work. We thank K. Su at Tsinghua University for assistance with this work. This work was funded by the President’s PhD Scholarship from Imperial College London (D.F.T.), the Wellcome Trust (225412/Z/22/Z) (S.S.), the Biotechnology and Biological Sciences Research Council (BB/N013956/1 and BB/N019008/1) (C.C.), the Wellcome Trust (200790/Z/16/Z) (C.C.), the Simons Foundation (564408) (C.C.) and the Engineering and Physical Sciences Research Council (EP/R035806/1) (CC). The School of Life Sciences and the IDG/McGovern Institute for Brain Research supported Y.Z. The Warren Alpert Distinguished Scholar Award and National Institutes of Health 1K99NS125131-01 supported D.S.R."},{"page":"18-33","date_updated":"2025-09-04T11:52:35Z","title":"Removing popular faces in curve arrangements","abstract":[{"lang":"eng","text":"A face in a curve arrangement is called popular if it is bounded by the same curve multiple times. Motivated by the automatic generation of curved nonogram puzzles, we investigate possibilities to eliminate the popular faces in an arrangement by inserting a single additional curve. This turns out to be NP-hard; however, it becomes tractable when the number of popular faces is small: We present a probabilistic FPT-approach in the number of popular faces."}],"conference":{"end_date":"2023-09-22","name":"GD: Graph Drawing and Network Visualization","start_date":"2023-09-20","location":"Isola delle Femmine, Palermo, Italy"},"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","publisher":"Springer Nature","doi":"10.1007/978-3-031-49275-4_2","_id":"14888","status":"public","type":"conference","external_id":{"arxiv":["2202.12175"],"isi":["001207942000002"]},"language":[{"iso":"eng"}],"fulldoi":"https://doi.org/10.1007/978-3-031-49275-4_2","isi":1,"date_published":"2024-01-06T00:00:00Z","day":"06","citation":{"short":"P. De Nooijer, S. Terziadis, A. Weinberger, Z. Masárová, T. Mchedlidze, M. Löffler, G. Rote, in:, 31st International Symposium on Graph Drawing and Network Visualization, Springer Nature, 2024, pp. 18–33.","ieee":"P. De Nooijer et al., “Removing popular faces in curve arrangements,” in 31st International Symposium on Graph Drawing and Network Visualization, Isola delle Femmine, Palermo, Italy, 2024, vol. 14466, pp. 18–33.","apa":"De Nooijer, P., Terziadis, S., Weinberger, A., Masárová, Z., Mchedlidze, T., Löffler, M., & Rote, G. (2024). Removing popular faces in curve arrangements. In 31st International Symposium on Graph Drawing and Network Visualization (Vol. 14466, pp. 18–33). Isola delle Femmine, Palermo, Italy: Springer Nature. https://doi.org/10.1007/978-3-031-49275-4_2","chicago":"De Nooijer, Phoebe, Soeren Terziadis, Alexandra Weinberger, Zuzana Masárová, Tamara Mchedlidze, Maarten Löffler, and Günter Rote. “Removing Popular Faces in Curve Arrangements.” In 31st International Symposium on Graph Drawing and Network Visualization, 14466:18–33. Springer Nature, 2024. https://doi.org/10.1007/978-3-031-49275-4_2.","ista":"De Nooijer P, Terziadis S, Weinberger A, Masárová Z, Mchedlidze T, Löffler M, Rote G. 2024. Removing popular faces in curve arrangements. 31st International Symposium on Graph Drawing and Network Visualization. GD: Graph Drawing and Network Visualization, LNCS, vol. 14466, 18–33.","ama":"De Nooijer P, Terziadis S, Weinberger A, et al. Removing popular faces in curve arrangements. In: 31st International Symposium on Graph Drawing and Network Visualization. Vol 14466. Springer Nature; 2024:18-33. doi:10.1007/978-3-031-49275-4_2","mla":"De Nooijer, Phoebe, et al. “Removing Popular Faces in Curve Arrangements.” 31st International Symposium on Graph Drawing and Network Visualization, vol. 14466, Springer Nature, 2024, pp. 18–33, doi:10.1007/978-3-031-49275-4_2."},"alternative_title":["LNCS"],"date_created":"2024-01-28T23:01:43Z","scopus_import":"1","department":[{"_id":"UlWa"},{"_id":"HeEd"}],"publication":"31st International Symposium on Graph Drawing and Network Visualization","acknowledgement":"This work was initiated at the 16th European Research Week on Geometric Graphs in Strobl in 2019. A.W. is supported by the Austrian Science Fund (FWF): W1230. S.T. has been funded by the Vienna Science and Technology Fund (WWTF) [10.47379/ICT19035]. A preliminary version of this work has been presented at the 38th European Workshop on Computational Geometry (EuroCG 2022) in Perugia [9]. A full version of this paper, which includes appendices but is otherwise identical, is available as a technical report [10].","volume":14466,"publication_identifier":{"issn":["0302-9743"],"eissn":["1611-3349"],"isbn":["9783031492747"]},"quality_controlled":"1","arxiv":1,"author":[{"full_name":"De Nooijer, Phoebe","first_name":"Phoebe","last_name":"De Nooijer"},{"full_name":"Terziadis, Soeren","first_name":"Soeren","last_name":"Terziadis"},{"full_name":"Weinberger, Alexandra","first_name":"Alexandra","last_name":"Weinberger"},{"id":"45CFE238-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6660-1322","full_name":"Masárová, Zuzana","first_name":"Zuzana","last_name":"Masárová"},{"last_name":"Mchedlidze","first_name":"Tamara","full_name":"Mchedlidze, Tamara"},{"last_name":"Löffler","first_name":"Maarten","full_name":"Löffler, Maarten"},{"full_name":"Rote, Günter","first_name":"Günter","last_name":"Rote"}],"publication_status":"published","year":"2024","oa":1,"article_processing_charge":"No","month":"01","oa_version":"Preprint","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2202.12175"}],"intvolume":" 14466"},{"day":"11","date_published":"2024-01-11T00:00:00Z","fulldoi":"https://doi.org/10.5334/ijc.1275","file":[{"access_level":"open_access","file_id":"14939","content_type":"application/pdf","file_name":"2023_IntJourCommons_Nomura.pdf","file_size":1305786,"checksum":"b80ebc889033c365d8f8c05a0c655382","date_updated":"2024-02-05T10:06:35Z","relation":"main_file","date_created":"2024-02-05T10:06:35Z","success":1,"creator":"dernst"}],"language":[{"iso":"eng"}],"keyword":["Sociology and Political Science"],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"file_date_updated":"2024-02-05T10:06:35Z","abstract":[{"lang":"eng","text":"Global services like navigation, communication, and Earth observation have increased dramatically in the 21st century due to advances in outer space industries. But as orbits become increasingly crowded with both satellites and inevitable space debris pollution, continued operations become endangered by the heightened risks of debris collisions in orbit. Kessler Syndrome is the term for when a critical threshold of orbiting debris triggers a runaway positive feedback loop of debris collisions, creating debris congestion that can render orbits unusable. As this potential tipping point becomes more widely recognized, there have been renewed calls for debris mitigation and removal. Here, we combine complex systems and social-ecological systems approaches to study how these efforts may affect space debris accumulation and the likelihood of reaching Kessler Syndrome. Specifically, we model how debris levels are affected by future launch rates, cleanup activities, and collisions between extant debris. We contextualize and interpret our dynamic model within a discussion of existing space debris governance and other social, economic, and geopolitical factors that may influence effective collective management of the orbital commons. In line with previous studies, our model finds that debris congestion may be reached in less than 200 years, though a holistic management strategy combining removal and mitigation actions can avoid such outcomes while continuing space activities. Moreover, although active debris removal may be particularly effective, the current lack of market and governance support may impede its implementation. Research into these critical dynamics and the multi-faceted variables that influence debris outcomes can support policymakers in curating impactful governance strategies and realistic transition pathways to sustaining debris-free orbits. Overall, our study is useful for communicating about space debris sustainability in policy and education settings by providing an exploration of policy portfolio options supported by a simple and clear social-ecological modeling approach."}],"title":"Tipping points of space debris in low earth orbit","date_updated":"2024-02-05T10:10:27Z","type":"journal_article","status":"public","_id":"14901","doi":"10.5334/ijc.1275","publisher":"Ubiquity Press","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","ddc":["550"],"publication_status":"published","article_type":"original","author":[{"full_name":"Nomura, Keiko","first_name":"Keiko","last_name":"Nomura"},{"last_name":"Rella","full_name":"Rella, Simon","first_name":"Simon","id":"B4765ACA-AA38-11E9-AC9A-0930E6697425"},{"last_name":"Merritt","full_name":"Merritt, Haily","first_name":"Haily"},{"first_name":"Mathieu","full_name":"Baltussen, Mathieu","last_name":"Baltussen"},{"last_name":"Bird","full_name":"Bird, Darcy","first_name":"Darcy"},{"last_name":"Tjuka","first_name":"Annika","full_name":"Tjuka, Annika"},{"full_name":"Falk, Dan","first_name":"Dan","last_name":"Falk"}],"issue":"1","intvolume":" 18","oa_version":"Published Version","month":"01","article_processing_charge":"Yes","year":"2024","oa":1,"publication":"International Journal of the Commons","department":[{"_id":"GradSch"},{"_id":"GaTk"}],"scopus_import":"1","date_created":"2024-01-30T11:58:02Z","has_accepted_license":"1","citation":{"ama":"Nomura K, Rella S, Merritt H, et al. Tipping points of space debris in low earth orbit. International Journal of the Commons. 2024;18(1). doi:10.5334/ijc.1275","mla":"Nomura, Keiko, et al. “Tipping Points of Space Debris in Low Earth Orbit.” International Journal of the Commons, vol. 18, no. 1, Ubiquity Press, 2024, doi:10.5334/ijc.1275.","ista":"Nomura K, Rella S, Merritt H, Baltussen M, Bird D, Tjuka A, Falk D. 2024. Tipping points of space debris in low earth orbit. International Journal of the Commons. 18(1).","chicago":"Nomura, Keiko, Simon Rella, Haily Merritt, Mathieu Baltussen, Darcy Bird, Annika Tjuka, and Dan Falk. “Tipping Points of Space Debris in Low Earth Orbit.” International Journal of the Commons. Ubiquity Press, 2024. https://doi.org/10.5334/ijc.1275.","apa":"Nomura, K., Rella, S., Merritt, H., Baltussen, M., Bird, D., Tjuka, A., & Falk, D. (2024). Tipping points of space debris in low earth orbit. International Journal of the Commons. Ubiquity Press. https://doi.org/10.5334/ijc.1275","ieee":"K. Nomura et al., “Tipping points of space debris in low earth orbit,” International Journal of the Commons, vol. 18, no. 1. Ubiquity Press, 2024.","short":"K. Nomura, S. Rella, H. Merritt, M. Baltussen, D. Bird, A. Tjuka, D. Falk, International Journal of the Commons 18 (2024)."},"quality_controlled":"1","publication_identifier":{"issn":["1875-0281"]},"volume":18,"acknowledgement":"The authors would like to thank the special issue co-editors, Marco Janssen and Xiao-Shan Yap, and the anonymous reviewers for their comments that helped improve the manuscript. The paper also benefited from suggestions by other author participants in this special issue. We would also like to thank the 2022 Santa Fe Institute Complex Systems Summer School for providing space to initiate this study."},{"citation":{"ista":"Hausel T, Letellier E, Rodriguez-Villegas F. 2024. Locally free representations of quivers over commutative Frobenius algebras. Selecta Mathematica. 30(2), 20.","mla":"Hausel, Tamás, et al. “Locally Free Representations of Quivers over Commutative Frobenius Algebras.” Selecta Mathematica, vol. 30, no. 2, 20, Springer Nature, 2024, doi:10.1007/s00029-023-00914-2.","ama":"Hausel T, Letellier E, Rodriguez-Villegas F. Locally free representations of quivers over commutative Frobenius algebras. Selecta Mathematica. 2024;30(2). doi:10.1007/s00029-023-00914-2","short":"T. Hausel, E. Letellier, F. Rodriguez-Villegas, Selecta Mathematica 30 (2024).","ieee":"T. Hausel, E. Letellier, and F. Rodriguez-Villegas, “Locally free representations of quivers over commutative Frobenius algebras,” Selecta Mathematica, vol. 30, no. 2. Springer Nature, 2024.","apa":"Hausel, T., Letellier, E., & Rodriguez-Villegas, F. (2024). Locally free representations of quivers over commutative Frobenius algebras. Selecta Mathematica. Springer Nature. https://doi.org/10.1007/s00029-023-00914-2","chicago":"Hausel, Tamás, Emmanuel Letellier, and Fernando Rodriguez-Villegas. “Locally Free Representations of Quivers over Commutative Frobenius Algebras.” Selecta Mathematica. Springer Nature, 2024. https://doi.org/10.1007/s00029-023-00914-2."},"publication":"Selecta Mathematica","department":[{"_id":"TaHa"}],"scopus_import":"1","date_created":"2024-02-04T23:00:53Z","acknowledgement":"Special thanks go to Christof Geiss, Bernard Leclerc and Jan Schröer for explaining their work but also for sharing some unpublished results with us. We also thank the referee for many useful suggestions. We would like to thank Tommaso Scognamiglio for pointing out a mistake in the proof of Proposition 5.17 in an earlier version of the paper. We would like also to thank Alexander Beilinson, Bill Crawley-Boevey, Joel Kamnitzer, and Peng Shan for useful discussions.","article_number":"20","OA_type":"green","arxiv":1,"OA_place":"repository","quality_controlled":"1","volume":30,"publication_identifier":{"eissn":["1420-9020"],"issn":["1022-1824"]},"article_type":"original","publication_status":"published","author":[{"id":"4A0666D8-F248-11E8-B48F-1D18A9856A87","first_name":"Tamás","orcid":"0000-0002-9582-2634","full_name":"Hausel, Tamás","last_name":"Hausel"},{"full_name":"Letellier, Emmanuel","first_name":"Emmanuel","last_name":"Letellier"},{"first_name":"Fernando","full_name":"Rodriguez-Villegas, Fernando","last_name":"Rodriguez-Villegas"}],"article_processing_charge":"No","year":"2024","oa":1,"issue":"2","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.1810.01818"}],"intvolume":" 30","oa_version":"Preprint","month":"01","date_updated":"2025-09-04T11:56:33Z","abstract":[{"lang":"eng","text":"In this paper we investigate locally free representations of a quiver Q over a commutative Frobenius algebra R by arithmetic Fourier transform. When the base field is finite we prove that the number of isomorphism classes of absolutely indecomposable locally free representations of fixed rank is independent of the orientation of Q. We also prove that the number of isomorphism classes of locally free absolutely indecomposable representations of the preprojective algebra of Q over R equals the number of isomorphism classes of locally free absolutely indecomposable representations of Q over R[t]/(t2). Using these results together with results of Geiss, Leclerc and Schröer we give, when k is algebraically closed, a classification of pairs (Q, R) such that the set of isomorphism classes of indecomposable locally free representations of Q over R is finite. Finally when the representation is free of rank 1 at each vertex of Q, we study the function that counts the number of isomorphism classes of absolutely indecomposable locally free representations of Q over the Frobenius algebra Fq[t]/(tr). We prove that they are polynomial in q and their generating function is rational and satisfies a functional equation."}],"title":"Locally free representations of quivers over commutative Frobenius algebras","doi":"10.1007/s00029-023-00914-2","publisher":"Springer Nature","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","type":"journal_article","status":"public","_id":"14930","fulldoi":"https://doi.org/10.1007/s00029-023-00914-2","isi":1,"language":[{"iso":"eng"}],"external_id":{"arxiv":["1810.01818"],"isi":["001150684300001"]},"day":"27","date_published":"2024-01-27T00:00:00Z"},{"citation":{"short":"M. Tsuboi, B.T. Kopperud, M. Matschiner, M. Grabowski, C. Syrowatka, C. Pélabon, T.F. Hansen, Evolutionary Biology 51 (2024) 149–165.","apa":"Tsuboi, M., Kopperud, B. T., Matschiner, M., Grabowski, M., Syrowatka, C., Pélabon, C., & Hansen, T. F. (2024). Antler allometry, the Irish elk and Gould revisited. Evolutionary Biology. Springer Nature. https://doi.org/10.1007/s11692-023-09624-1","ieee":"M. Tsuboi et al., “Antler allometry, the Irish elk and Gould revisited,” Evolutionary Biology, vol. 51. Springer Nature, pp. 149–165, 2024.","chicago":"Tsuboi, Masahito, Bjørn Tore Kopperud, Michael Matschiner, Mark Grabowski, Chrsitine Syrowatka, Christophe Pélabon, and Thomas F. Hansen. “Antler Allometry, the Irish Elk and Gould Revisited.” Evolutionary Biology. Springer Nature, 2024. https://doi.org/10.1007/s11692-023-09624-1.","ista":"Tsuboi M, Kopperud BT, Matschiner M, Grabowski M, Syrowatka C, Pélabon C, Hansen TF. 2024. Antler allometry, the Irish elk and Gould revisited. Evolutionary Biology. 51, 149–165.","ama":"Tsuboi M, Kopperud BT, Matschiner M, et al. Antler allometry, the Irish elk and Gould revisited. Evolutionary Biology. 2024;51:149-165. doi:10.1007/s11692-023-09624-1","mla":"Tsuboi, Masahito, et al. “Antler Allometry, the Irish Elk and Gould Revisited.” Evolutionary Biology, vol. 51, Springer Nature, 2024, pp. 149–65, doi:10.1007/s11692-023-09624-1."},"has_accepted_license":"1","date_created":"2024-02-04T23:00:53Z","scopus_import":"1","department":[{"_id":"MaRo"}],"publication":"Evolutionary Biology","acknowledgement":"Open access funding provided by University of Oslo (incl Oslo University Hospital).\r\nWe thank Adrian Lister, Louis Tomsett, Roberto Portela Miguez and Roula Pappa (NHMUK), Brian O'Toole and Eileen Westwig (AMNH), Daniela Kalthoff (NHRM), Alexander Bibl and Zachos Frank (NHMW), Darrin Lunde and John Ososky (NMNH), Matthew Parkes and Nigel Monaghan (NMI), Elizabetta Cioppi and Luca Bellucci (IGF), and Yoshihiro Tanaka and Hiroyuki Taruno (OMNH), who helped us in obtaining the museum data, and a special thanks to Jørgen Sikkeland (NTNU NHM) for assistance in obtaining the ontogenetic data for the red deer. We thank Olja Toljagic and Kjetil L. Voje for discussions, Ayumu Tsuboi for assistance with data collection, and Jean-Michel Gaillard and the anonymous reviewers for comments on the manuscript. We thank the Centre of Advanced Study (CAS) at the Norwegian Academy of Sciences and Letters for hosting us during the academic year of 2019/2020 when much of the analysis and writing were done. MT was funded by JSPS Research Fellowship for Young Scientists (201603238).","publication_identifier":{"eissn":["1934-2845"],"issn":["0071-3260"]},"volume":51,"quality_controlled":"1","author":[{"last_name":"Tsuboi","full_name":"Tsuboi, Masahito","first_name":"Masahito"},{"last_name":"Kopperud","full_name":"Kopperud, Bjørn Tore","first_name":"Bjørn Tore"},{"last_name":"Matschiner","full_name":"Matschiner, Michael","first_name":"Michael"},{"last_name":"Grabowski","full_name":"Grabowski, Mark","first_name":"Mark"},{"last_name":"Syrowatka","full_name":"Syrowatka, Chrsitine","first_name":"Chrsitine","id":"205ffb76-7fe7-11eb-aa17-958bd11b99ad"},{"first_name":"Christophe","full_name":"Pélabon, Christophe","last_name":"Pélabon"},{"last_name":"Hansen","first_name":"Thomas F.","full_name":"Hansen, Thomas F."}],"publication_status":"published","article_type":"original","ddc":["570"],"year":"2024","oa":1,"article_processing_charge":"Yes (via OA deal)","month":"03","intvolume":" 51","oa_version":"Published Version","date_updated":"2025-09-04T11:54:55Z","page":"149-165","title":"Antler allometry, the Irish elk and Gould revisited","abstract":[{"lang":"eng","text":"The huge antlers of the extinct Irish elk have invited evolutionary speculation since Darwin. In the 1970s, Stephen Jay Gould presented the first extensive data on antler size in the Irish elk and combined these with comparative data from other deer to test the hypothesis that the gigantic antlers were the outcome of a positive allometry that constrained large-bodied deer to have proportionally even larger antlers. He concluded that the Irish elk had antlers as predicted for its size and interpreted this within his emerging framework of developmental constraints as an explanatory factor in evolution. Here we reanalyze antler allometry based on new morphometric data for 57 taxa of the family Cervidae. We also present a new phylogeny for the Cervidae, which we use for comparative analyses. In contrast to Gould, we find that the antlers of Irish elk were larger than predicted from the allometry within the true deer, Cervini, as analyzed by Gould, but follow the allometry across Cervidae as a whole. After dissecting the discrepancy, we reject the allometric-constraint hypothesis because, contrary to Gould, we find no similarity between static and evolutionary allometries, and because we document extensive non-allometric evolution of antler size across the Cervidae."}],"file_date_updated":"2024-07-22T11:53:43Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","publisher":"Springer Nature","doi":"10.1007/s11692-023-09624-1","_id":"14932","status":"public","type":"journal_article","external_id":{"isi":["001151285200001"]},"language":[{"iso":"eng"}],"fulldoi":"https://doi.org/10.1007/s11692-023-09624-1","file":[{"file_id":"17311","access_level":"open_access","file_name":"2024_EvolutionaryBio_Tsuboi.pdf","content_type":"application/pdf","checksum":"416ab4dac751c443b9de51fb58278ff2","date_updated":"2024-07-22T11:53:43Z","file_size":1705974,"success":1,"creator":"dernst","date_created":"2024-07-22T11:53:43Z","relation":"main_file"}],"isi":1,"day":"01","date_published":"2024-03-01T00:00:00Z","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"}},{"has_accepted_license":"1","citation":{"chicago":"Pimenta-Marques, Ana, Tania Perestrelo, Patricia Dos Reis Rodrigues, Paulo Duarte, Ana Ferreira-Silva, Mariana Lince-Faria, and Mónica Bettencourt-Dias. “Ana1/CEP295 Is an Essential Player in the Centrosome Maintenance Program Regulated by Polo Kinase and the PCM.” EMBO Reports. Embo Press, 2024. https://doi.org/10.1038/s44319-023-00020-6.","short":"A. Pimenta-Marques, T. Perestrelo, P. Dos Reis Rodrigues, P. Duarte, A. Ferreira-Silva, M. Lince-Faria, M. Bettencourt-Dias, EMBO Reports 25 (2024) 102–127.","ieee":"A. Pimenta-Marques et al., “Ana1/CEP295 is an essential player in the centrosome maintenance program regulated by Polo kinase and the PCM,” EMBO Reports, vol. 25, no. 1. Embo Press, pp. 102–127, 2024.","apa":"Pimenta-Marques, A., Perestrelo, T., Dos Reis Rodrigues, P., Duarte, P., Ferreira-Silva, A., Lince-Faria, M., & Bettencourt-Dias, M. (2024). Ana1/CEP295 is an essential player in the centrosome maintenance program regulated by Polo kinase and the PCM. EMBO Reports. Embo Press. https://doi.org/10.1038/s44319-023-00020-6","mla":"Pimenta-Marques, Ana, et al. “Ana1/CEP295 Is an Essential Player in the Centrosome Maintenance Program Regulated by Polo Kinase and the PCM.” EMBO Reports, vol. 25, no. 1, Embo Press, 2024, pp. 102–27, doi:10.1038/s44319-023-00020-6.","ama":"Pimenta-Marques A, Perestrelo T, Dos Reis Rodrigues P, et al. Ana1/CEP295 is an essential player in the centrosome maintenance program regulated by Polo kinase and the PCM. EMBO Reports. 2024;25(1):102-127. doi:10.1038/s44319-023-00020-6","ista":"Pimenta-Marques A, Perestrelo T, Dos Reis Rodrigues P, Duarte P, Ferreira-Silva A, Lince-Faria M, Bettencourt-Dias M. 2024. Ana1/CEP295 is an essential player in the centrosome maintenance program regulated by Polo kinase and the PCM. EMBO Reports. 25(1), 102–127."},"publication":"EMBO Reports","date_created":"2024-02-04T23:00:53Z","department":[{"_id":"MiSi"}],"scopus_import":"1","acknowledgement":"We thank all members of the Cell Cycle and Regulation Lab for the discussions and for the critical reading of the manuscript. We thank Tomer Avidor-Reiss (University of Toledo, Toledo, OH), Daniel St. Johnston (The Gurdon Institute, Cambridge, UK), David Glover (University of Cambridge, Cambridge, UK), Jingyan Fu (Agricultural University, Beijing, China) Jordan Raff (University of Oxford, Oxford, UK) and Timothy Megraw (Florida State University, Tallahassee, FL) for sharing tools. We acknowledge the technical support of Instituto Gulbenkian de Ciência (IGC)‘s Advanced Imaging Facility, in particular Gabriel Martins, Nuno Pimpão Martins and José Marques. We also thank Tiago Paixão from the IGC’s Quantitative & Digital Science Unit and Marco Louro from the CCR lab for the support provided on statistical analysis. IGC’s Advanced Imaging Facility (AIF-UIC) is supported by the national Portuguese funding ref# PPBI-POCI-01-0145-FEDER -022122. We thank the IGC’s Fly Facility, supported by CONGENTO (LISBOA-01-0145-FEDER-022170). This work was supported by an ERC grant (ERC-2015-CoG-683258) awarded to MBD and a grant from the Portuguese Research Council (FCT) awarded to APM (PTDC/BIA-BID/32225/2017).","quality_controlled":"1","volume":25,"publication_identifier":{"eissn":["1469-3178"]},"author":[{"full_name":"Pimenta-Marques, Ana","first_name":"Ana","last_name":"Pimenta-Marques"},{"last_name":"Perestrelo","first_name":"Tania","full_name":"Perestrelo, Tania"},{"first_name":"Patricia","orcid":"0000-0003-1681-508X","full_name":"Dos Reis Rodrigues, Patricia","id":"26E95904-5160-11E9-9C0B-C5B0DC97E90F","last_name":"Dos Reis Rodrigues"},{"last_name":"Duarte","first_name":"Paulo","full_name":"Duarte, Paulo"},{"last_name":"Ferreira-Silva","full_name":"Ferreira-Silva, Ana","first_name":"Ana"},{"full_name":"Lince-Faria, Mariana","first_name":"Mariana","last_name":"Lince-Faria"},{"first_name":"Mónica","full_name":"Bettencourt-Dias, Mónica","last_name":"Bettencourt-Dias"}],"publication_status":"published","article_type":"original","ddc":["570"],"oa":1,"year":"2024","article_processing_charge":"Yes (in subscription journal)","issue":"1","intvolume":" 25","oa_version":"Published Version","month":"01","page":"102-127","date_updated":"2025-04-23T07:39:52Z","pmid":1,"abstract":[{"lang":"eng","text":"Centrioles are part of centrosomes and cilia, which are microtubule organising centres (MTOC) with diverse functions. Despite their stability, centrioles can disappear during differentiation, such as in oocytes, but little is known about the regulation of their structural integrity. Our previous research revealed that the pericentriolar material (PCM) that surrounds centrioles and its recruiter, Polo kinase, are downregulated in oogenesis and sufficient for maintaining both centrosome structural integrity and MTOC activity. We now show that the expression of specific components of the centriole cartwheel and wall, including ANA1/CEP295, is essential for maintaining centrosome integrity. We find that Polo kinase requires ANA1 to promote centriole stability in cultured cells and eggs. In addition, ANA1 expression prevents the loss of centrioles observed upon PCM-downregulation. However, the centrioles maintained by overexpressing and tethering ANA1 are inactive, unlike the MTOCs observed upon tethering Polo kinase. These findings demonstrate that several centriole components are needed to maintain centrosome structure. Our study also highlights that centrioles are more dynamic than previously believed, with their structural stability relying on the continuous expression of multiple components."}],"file_date_updated":"2024-02-05T12:35:03Z","title":"Ana1/CEP295 is an essential player in the centrosome maintenance program regulated by Polo kinase and the PCM","doi":"10.1038/s44319-023-00020-6","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"Embo Press","_id":"14933","status":"public","type":"journal_article","language":[{"iso":"eng"}],"fulldoi":"https://doi.org/10.1038/s44319-023-00020-6","file":[{"creator":"dernst","success":1,"relation":"main_file","date_created":"2024-02-05T12:35:03Z","checksum":"53c3ef43d9bd6d7bff3ffcf57d763cac","date_updated":"2024-02-05T12:35:03Z","file_size":9645056,"content_type":"application/pdf","file_name":"2023_EmboReports_PimentaMarques.pdf","file_id":"14941","access_level":"open_access"}],"external_id":{"pmid":["38200359"]},"day":"10","date_published":"2024-01-10T00:00:00Z","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"}},{"acknowledgement":"The authors would like to thank Matthias Erbar and Ronan Herry for valuable discussions on this project. They are also grateful to Nathanaël Berestycki, and Fabrice Baudoin for respectively pointing out the references [7], and [6, 24], and to Julien Fageot and Thomas Letendre for pointing out a mistake in a previous version of the proof of Proposition 3.10. The authors feel very much indebted to an anonymous reviewer for his/her careful reading and the many valuable suggestions that have significantly contributed to the improvement of the paper. L.D.S. gratefully acknowledges financial support by the Deutsche Forschungsgemeinschaft through CRC 1060 as well as through SPP 2265, and by the Austrian Science Fund (FWF) grant F65 at Institute of Science and Technology Austria. This research was funded in whole or in part by the Austrian Science Fund (FWF) ESPRIT 208. For the purpose of open access, the authors have applied a CC BY public copyright licence to any Author Accepted Manuscript version arising from this submission. E.K. and K.-T.S. gratefully acknowledge funding by the Deutsche Forschungsgemeinschaft through the Hausdorff Center for Mathematics and through CRC 1060 as well as through SPP 2265.\r\nOpen Access funding enabled and organized by Projekt DEAL.","volume":61,"publication_identifier":{"eissn":["1572-929X"],"issn":["0926-2601"]},"OA_place":"publisher","arxiv":1,"quality_controlled":"1","OA_type":"hybrid","citation":{"apa":"Dello Schiavo, L., Kopfer, E., & Sturm, K. T. (2024). A discovery tour in random Riemannian geometry. Potential Analysis. Springer Nature. https://doi.org/10.1007/s11118-023-10118-0","ieee":"L. Dello Schiavo, E. Kopfer, and K. T. Sturm, “A discovery tour in random Riemannian geometry,” Potential Analysis, vol. 61. Springer Nature, pp. 501–553, 2024.","short":"L. Dello Schiavo, E. Kopfer, K.T. Sturm, Potential Analysis 61 (2024) 501–553.","chicago":"Dello Schiavo, Lorenzo, Eva Kopfer, and Karl Theodor Sturm. “A Discovery Tour in Random Riemannian Geometry.” Potential Analysis. Springer Nature, 2024. https://doi.org/10.1007/s11118-023-10118-0.","ista":"Dello Schiavo L, Kopfer E, Sturm KT. 2024. A discovery tour in random Riemannian geometry. Potential Analysis. 61, 501–553.","ama":"Dello Schiavo L, Kopfer E, Sturm KT. A discovery tour in random Riemannian geometry. Potential Analysis. 2024;61:501-553. doi:10.1007/s11118-023-10118-0","mla":"Dello Schiavo, Lorenzo, et al. “A Discovery Tour in Random Riemannian Geometry.” Potential Analysis, vol. 61, Springer Nature, 2024, pp. 501–53, doi:10.1007/s11118-023-10118-0."},"has_accepted_license":"1","date_created":"2024-02-04T23:00:54Z","scopus_import":"1","department":[{"_id":"JaMa"}],"publication":"Potential Analysis","year":"2024","oa":1,"article_processing_charge":"Yes (via OA deal)","month":"10","oa_version":"Published Version","intvolume":" 61","author":[{"last_name":"Dello Schiavo","first_name":"Lorenzo","full_name":"Dello Schiavo, Lorenzo","orcid":"0000-0002-9881-6870","id":"ECEBF480-9E4F-11EA-B557-B0823DDC885E"},{"last_name":"Kopfer","first_name":"Eva","full_name":"Kopfer, Eva"},{"last_name":"Sturm","full_name":"Sturm, Karl Theodor","first_name":"Karl Theodor"}],"publication_status":"published","article_type":"original","ddc":["510"],"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","publisher":"Springer Nature","doi":"10.1007/s11118-023-10118-0","_id":"14934","status":"public","project":[{"grant_number":"F6504","name":"Taming Complexity in Partial Differential Systems","_id":"fc31cba2-9c52-11eb-aca3-ff467d239cd2"}],"type":"journal_article","page":"501-553","date_updated":"2025-09-04T11:57:14Z","title":"A discovery tour in random Riemannian geometry","abstract":[{"lang":"eng","text":"We study random perturbations of a Riemannian manifold (M, g) by means of so-called\r\nFractional Gaussian Fields, which are defined intrinsically by the given manifold. The fields\r\nh• : ω \u0002→ hω will act on the manifold via the conformal transformation g \u0002→ gω := e2hω g.\r\nOur focus will be on the regular case with Hurst parameter H > 0, the critical case H = 0\r\nbeing the celebrated Liouville geometry in two dimensions. We want to understand how basic\r\ngeometric and functional-analytic quantities like diameter, volume, heat kernel, Brownian\r\nmotion, spectral bound, or spectral gap change under the influence of the noise. And if so, is\r\nit possible to quantify these dependencies in terms of key parameters of the noise? Another\r\ngoal is to define and analyze in detail the Fractional Gaussian Fields on a general Riemannian\r\nmanifold, a fascinating object of independent interest."}],"file_date_updated":"2025-01-09T08:13:34Z","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"external_id":{"arxiv":["2012.06796"],"isi":["001151118800001"]},"language":[{"iso":"eng"}],"fulldoi":"https://doi.org/10.1007/s11118-023-10118-0","isi":1,"file":[{"access_level":"open_access","file_id":"18789","content_type":"application/pdf","file_name":"2024_PotentialAnalysis_DelloSchiavo.pdf","file_size":1294993,"checksum":"33c688bdf296c3d8f8bbd96c7dd26037","date_updated":"2025-01-09T08:13:34Z","relation":"main_file","date_created":"2025-01-09T08:13:34Z","success":1,"creator":"dernst"}],"day":"01","date_published":"2024-10-01T00:00:00Z"},{"oa_version":"Published Version","intvolume":" 19","month":"04","year":"2024","oa":1,"article_processing_charge":"Yes","ddc":["550"],"author":[{"last_name":"Fugger","first_name":"Stefan","full_name":"Fugger, Stefan","id":"86698d64-c4c6-11ee-af02-cdf1e6a7d31f"},{"last_name":"Shaw","first_name":"Thomas","full_name":"Shaw, Thomas","orcid":"0000-0001-7640-6152","id":"3caa3f91-1f03-11ee-96ce-e0e553054d6e"},{"first_name":"Achille","full_name":"Jouberton, Achille","last_name":"Jouberton"},{"first_name":"Evan","full_name":"Miles, Evan","last_name":"Miles"},{"last_name":"Buri","id":"317987aa-9421-11ee-ac5a-b941b041abba","full_name":"Buri, Pascal","first_name":"Pascal"},{"last_name":"McCarthy","id":"22a2674a-61ce-11ee-94b5-d18813baf16f","full_name":"McCarthy, Michael","first_name":"Michael"},{"last_name":"Fyffe","id":"001b0422-8d15-11ed-bc51-cab6c037a228","full_name":"Fyffe, Catriona Louise","first_name":"Catriona Louise"},{"last_name":"Fatichi","first_name":"Simone","full_name":"Fatichi, Simone"},{"last_name":"Kneib","first_name":"Marin","full_name":"Kneib, Marin"},{"first_name":"Peter","full_name":"Molnar, Peter","last_name":"Molnar"},{"last_name":"Pellicciotti","orcid":"0000-0002-5554-8087","full_name":"Pellicciotti, Francesca","first_name":"Francesca","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70"}],"article_type":"original","publication_status":"published","quality_controlled":"1","volume":19,"publication_identifier":{"issn":["1748-9326"]},"article_number":"044057","acknowledgement":"We would like to thank the team at the Center for the Research of Glaciers, Tajik National Academy of Sciences, Abduhamid Kayumov, Khusrav Kabutov, Ardamehr Halimov, among others, for their invaluable support over multiple field seasons in Kyzylsu. We thank Wei Yang, Zhao Xhuanxi and Zhen Cheng from the Institute of Tibetan Plateau Research, Chinese Academy of Sciences, for facilitating and supporting fieldwork and for sharing crucial data from the Parlung 24K catchment. We thank Reeju Shrestha and Himalayan Research Expeditions for their great support in Langtang. We extend our thanks to Jakob Steiner and the team at ICIMOD for their relentless efforts in data acquisition and curation in Langtang. Additionally, we are indebted to Masashi Niwano from the Meteorological Research Institute, Japan Meteorological Agency, for providing NHM atmospheric simulation outputs, which proved very valuable in the downscaling process.\r\nThis project has received funding from the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation program Grant Agreements No. 772751 (RAVEN, Rapid mass losses of debris-covered glaciers in High Mountain Asia). Further funding was provided by JSPS-SNSF (Japan Society for the Promotion of Science and Swiss National Science Foundation) Bilateral Programmes project (HOPE, High-elevation precipitation in High Mountain Asia; Grant 183633). Fieldwork support for Tajikistan was received from the Swiss Polar Institute Flagship Programme PAMIR, SPI-FLAG-2021-001. The project also received funding from the ESA and NRSCC Dragon 5 cooperation project 'Cryosphere-hydrosphere interactions of the Asian water towers: using remote sensing to drive hyper-resolution ecohydrological modeling' (grant no. 59199). The National Natural Science Foundation of China (41961134035) financially supported the data collection at 24K.","publication":"Environmental Research Letters","date_created":"2024-02-05T09:01:11Z","department":[{"_id":"FrPe"}],"scopus_import":"1","has_accepted_license":"1","citation":{"chicago":"Fugger, Stefan, Thomas Shaw, Achille Jouberton, Evan Miles, Pascal Buri, Michael McCarthy, Catriona Louise Fyffe, et al. “Hydrological Regimes and Evaporative Flux Partitioning at the Climatic Ends of High Mountain Asia.” Environmental Research Letters. IOP Publishing, 2024. https://doi.org/10.1088/1748-9326/ad25a0.","short":"S. Fugger, T. Shaw, A. Jouberton, E. Miles, P. Buri, M. McCarthy, C.L. Fyffe, S. Fatichi, M. Kneib, P. Molnar, F. Pellicciotti, Environmental Research Letters 19 (2024).","apa":"Fugger, S., Shaw, T., Jouberton, A., Miles, E., Buri, P., McCarthy, M., … Pellicciotti, F. (2024). Hydrological regimes and evaporative flux partitioning at the climatic ends of High Mountain Asia. Environmental Research Letters. IOP Publishing. https://doi.org/10.1088/1748-9326/ad25a0","ieee":"S. Fugger et al., “Hydrological regimes and evaporative flux partitioning at the climatic ends of High Mountain Asia,” Environmental Research Letters, vol. 19. IOP Publishing, 2024.","ama":"Fugger S, Shaw T, Jouberton A, et al. Hydrological regimes and evaporative flux partitioning at the climatic ends of High Mountain Asia. Environmental Research Letters. 2024;19. doi:10.1088/1748-9326/ad25a0","mla":"Fugger, Stefan, et al. “Hydrological Regimes and Evaporative Flux Partitioning at the Climatic Ends of High Mountain Asia.” Environmental Research Letters, vol. 19, 044057, IOP Publishing, 2024, doi:10.1088/1748-9326/ad25a0.","ista":"Fugger S, Shaw T, Jouberton A, Miles E, Buri P, McCarthy M, Fyffe CL, Fatichi S, Kneib M, Molnar P, Pellicciotti F. 2024. Hydrological regimes and evaporative flux partitioning at the climatic ends of High Mountain Asia. Environmental Research Letters. 19, 044057."},"corr_author":"1","keyword":["Public Health","Environmental and Occupational Health","General Environmental Science","Renewable Energy","Sustainability and the Environment"],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"date_published":"2024-04-09T00:00:00Z","day":"09","language":[{"iso":"eng"}],"file":[{"content_type":"application/pdf","file_name":"2024_EnvironmResearch_Fugger.pdf","access_level":"open_access","file_id":"17295","relation":"main_file","date_created":"2024-07-22T09:14:44Z","creator":"dernst","success":1,"file_size":4433401,"checksum":"27999359b51c30fec6d81e48cdf0ee0d","date_updated":"2024-07-22T09:14:44Z"}],"fulldoi":"https://doi.org/10.1088/1748-9326/ad25a0","isi":1,"external_id":{"isi":["001198892300001"]},"status":"public","_id":"14938","type":"journal_article","doi":"10.1088/1748-9326/ad25a0","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","publisher":"IOP Publishing","abstract":[{"lang":"eng","text":"High elevation headwater catchments are complex hydrological systems that seasonally buffer water and release it in the form of snow and ice melt, modulating downstream runoff regimes and water availability. In High Mountain Asia (HMA), where a wide range of climates from semi-arid to monsoonal exist, the importance of the cryospheric contributions to the water budget varies with the amount and seasonal distribution of precipitation. Losses due to evapotranspiration and sublimation are to date largely unquantified components of the water budget in such catchments, although they can be comparable in magnitude to glacier melt contributions to streamflow. 
Here, we simulate the hydrology of three high elevation headwater catchments in distinct climates in HMA over 10 years using an ecohydrological model geared towards high-mountain areas including snow and glaciers, forced with reanalysis data. 
Our results show that evapotranspiration and sublimation together are most important at the semi-arid site, Kyzylsu, on the northernmost slopes of the Pamir mountain range. Here, the evaporative loss amounts to 28% of the water throughput, which we define as the total water added to, or removed from the water balance within a year. In comparison, evaporative losses are 19% at the Central Himalayan site Langtang and 13% at the wettest site, 24K, on the Southeastern Tibetan Plateau. At the three sites, respectively, sublimation removes 15%, 13% and 6% of snowfall, while evapotranspiration removes the equivalent of 76%, 28% and 19% of rainfall. In absolute terms, and across a comparable elevation range, the highest ET flux is 413 mm yr-1 at 24K, while the highest sublimation flux is 91 mm yr-1 at Kyzylsu. During warm and dry years, glacier melt was found to only partially compensate for the annual supply deficit."}],"file_date_updated":"2024-07-22T09:14:44Z","title":"Hydrological regimes and evaporative flux partitioning at the climatic ends of High Mountain Asia","date_updated":"2025-09-04T11:57:57Z"}]