[{"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"citation":{"mla":"trinh, Van Giang, et al. Mapping the Attractor Landscape of Boolean Networks. Zenodo, 2024, doi:10.5281/ZENODO.13854759.","ieee":"V. G. trinh, K. H. Park, S. Pastva, and J. Rozum, “Mapping the attractor landscape of Boolean networks.” Zenodo, 2024.","short":"V.G. trinh, K.H. Park, S. Pastva, J. Rozum, (2024).","ama":"trinh VG, Park KH, Pastva S, Rozum J. Mapping the attractor landscape of Boolean networks. 2024. doi:10.5281/ZENODO.13854759","apa":"trinh, V. G., Park, K. H., Pastva, S., & Rozum, J. (2024). Mapping the attractor landscape of Boolean networks. Zenodo. https://doi.org/10.5281/ZENODO.13854759","chicago":"trinh, Van Giang, Kyu Hyong Park, Samuel Pastva, and Jordan Rozum. “Mapping the Attractor Landscape of Boolean Networks.” Zenodo, 2024. https://doi.org/10.5281/ZENODO.13854759.","ista":"trinh VG, Park KH, Pastva S, Rozum J. 2024. Mapping the attractor landscape of Boolean networks, Zenodo, 10.5281/ZENODO.13854759."},"fulldoi":"https://doi.org/10.5281/ZENODO.13854759","main_file_link":[{"open_access":"1","url":"https://doi.org/10.5281/zenodo.13854760"}],"month":"09","article_processing_charge":"No","oa":1,"ddc":["000"],"status":"public","publisher":"Zenodo","date_created":"2025-06-10T07:10:01Z","has_accepted_license":"1","type":"research_data_reference","date_updated":"2025-09-30T12:46:33Z","OA_type":"green","date_published":"2024-09-28T00:00:00Z","doi":"10.5281/ZENODO.13854759","license":"https://creativecommons.org/licenses/by/4.0/","department":[{"_id":"ToHe"}],"_id":"19800","title":"Mapping the attractor landscape of Boolean networks","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","OA_place":"repository","year":"2024","day":"28","related_material":{"record":[{"relation":"used_in_publication","status":"public","id":"19796"}]},"oa_version":"Published Version","author":[{"first_name":"Van Giang","last_name":"trinh","full_name":"trinh, Van Giang"},{"last_name":"Park","full_name":"Park, Kyu Hyong","first_name":"Kyu Hyong"},{"last_name":"Pastva","full_name":"Pastva, Samuel","first_name":"Samuel","id":"07c5ea74-f61c-11ec-a664-aa7c5d957b2b","orcid":"0000-0003-1993-0331"},{"first_name":"Jordan","full_name":"Rozum, Jordan","last_name":"Rozum"}],"abstract":[{"text":"This archive contains all the code and data necessary to reproduce the results presented in the \r\n\"Mapping the attractor landscape of Boolean networks\" paper.","lang":"eng"}]},{"scopus_import":"1","citation":{"apa":"Sun, F., Mishra, S., Stockert, U., Daou, R., Kikugawa, N., Perry, R. S., … Sunko, V. (2024). The Lorenz ratio as a guide to scattering contributions to transport in strongly correlated metals. Proceedings of the National Academy of Sciences. National Academy of Sciences. https://doi.org/10.1073/pnas.2318159121","ama":"Sun F, Mishra S, Stockert U, et al. The Lorenz ratio as a guide to scattering contributions to transport in strongly correlated metals. Proceedings of the National Academy of Sciences. 2024;121(35). doi:10.1073/pnas.2318159121","chicago":"Sun, Fei, Simli Mishra, Ulrike Stockert, Ramzy Daou, Naoki Kikugawa, Robin S. Perry, Elena Hassinger, Sean A. Hartnoll, Andrew P. Mackenzie, and Veronika Sunko. “The Lorenz Ratio as a Guide to Scattering Contributions to Transport in Strongly Correlated Metals.” Proceedings of the National Academy of Sciences. National Academy of Sciences, 2024. https://doi.org/10.1073/pnas.2318159121.","ista":"Sun F, Mishra S, Stockert U, Daou R, Kikugawa N, Perry RS, Hassinger E, Hartnoll SA, Mackenzie AP, Sunko V. 2024. The Lorenz ratio as a guide to scattering contributions to transport in strongly correlated metals. Proceedings of the National Academy of Sciences. 121(35).","mla":"Sun, Fei, et al. “The Lorenz Ratio as a Guide to Scattering Contributions to Transport in Strongly Correlated Metals.” Proceedings of the National Academy of Sciences, vol. 121, no. 35, National Academy of Sciences, 2024, doi:10.1073/pnas.2318159121.","short":"F. Sun, S. Mishra, U. Stockert, R. Daou, N. Kikugawa, R.S. Perry, E. Hassinger, S.A. Hartnoll, A.P. Mackenzie, V. Sunko, Proceedings of the National Academy of Sciences 121 (2024).","ieee":"F. Sun et al., “The Lorenz ratio as a guide to scattering contributions to transport in strongly correlated metals,” Proceedings of the National Academy of Sciences, vol. 121, no. 35. National Academy of Sciences, 2024."},"intvolume":" 121","month":"08","issue":"35","status":"public","publisher":"National Academy of Sciences","date_created":"2025-06-10T09:12:41Z","language":[{"iso":"eng"}],"has_accepted_license":"1","type":"journal_article","doi":"10.1073/pnas.2318159121","publication_identifier":{"issn":["0027-8424"],"eissn":["1091-6490"]},"title":"The Lorenz ratio as a guide to scattering contributions to transport in strongly correlated metals","day":"27","oa_version":"Published Version","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"fulldoi":"https://doi.org/10.1073/pnas.2318159121","volume":121,"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1073/pnas.2318159121"}],"oa":1,"article_processing_charge":"No","publication_status":"published","pmid":1,"date_updated":"2025-06-10T11:50:48Z","OA_type":"hybrid","date_published":"2024-08-27T00:00:00Z","external_id":{"pmid":["39172781"]},"_id":"19809","OA_place":"publisher","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","extern":"1","year":"2024","author":[{"first_name":"Fei","last_name":"Sun","full_name":"Sun, Fei"},{"full_name":"Mishra, Simli","last_name":"Mishra","first_name":"Simli"},{"first_name":"Ulrike","full_name":"Stockert, Ulrike","last_name":"Stockert"},{"full_name":"Daou, Ramzy","last_name":"Daou","first_name":"Ramzy"},{"first_name":"Naoki","full_name":"Kikugawa, Naoki","last_name":"Kikugawa"},{"last_name":"Perry","full_name":"Perry, Robin S.","first_name":"Robin S."},{"first_name":"Elena","full_name":"Hassinger, Elena","last_name":"Hassinger"},{"full_name":"Hartnoll, Sean A.","last_name":"Hartnoll","first_name":"Sean A."},{"first_name":"Andrew P.","last_name":"Mackenzie","full_name":"Mackenzie, Andrew P."},{"full_name":"Sunko, Veronika","last_name":"Sunko","first_name":"Veronika","id":"23cb1cf6-2c7a-11ef-91a4-f72fc19f20b3","orcid":"0000-0003-2724-3523"}],"article_type":"original","quality_controlled":"1","publication":"Proceedings of the National Academy of Sciences","abstract":[{"text":"In many physical situations in which many-body assemblies exist at temperature T, a characteristic quantum-mechanical time scale of approximately h/kbT can be identified in both theory and experiment, leading to speculation that it may be the shortest meaningful time in such circumstances. This behavior can be investigated by probing the scattering rate of electrons in a broad class of materials often referred to as “strongly correlated metals”. It is clear that in some cases only electron–electron scattering can be its cause, while in others it arises from high-temperature scattering of electrons from quantized lattice vibrations, i.e., phonons. In metallic oxides, which are among the most studied materials, analysis of electrical transport does not satisfactorily identify the relevant scattering mechanism at “high” temperatures near room temperature. We therefore employ a contactless optical method to measure thermal diffusivity in two Ru-based layered perovskites, Sr3Ru2O7 and Sr2RuO4, and use the measurements to extract the dimensionless Lorenz ratio. By comparing our results to the literature data on both conventional and unconventional metals, we show how the analysis of high-temperature thermal transport can both give important insight into dominant scattering mechanisms and be offered as a stringent test of theories attempting to explain anomalous scattering.","lang":"eng"}]},{"type":"journal_article","language":[{"iso":"eng"}],"date_created":"2025-06-10T09:17:30Z","doi":"10.1103/physrevx.14.031013","day":"22","title":"Multimodal approach reveals the symmetry-breaking pathway to the broken helix in EuIn2As2","publication_identifier":{"eissn":["2160-3308"]},"oa_version":"Published Version","intvolume":" 14","citation":{"ieee":"E. Donoway et al., “Multimodal approach reveals the symmetry-breaking pathway to the broken helix in EuIn2As2,” Physical Review X, vol. 14, no. 3. American Physical Society, 2024.","short":"E. Donoway, T.V. Trevisan, A. Liebman-Peláez, R.P. Day, K. Yamakawa, Y. Sun, J.R. Soh, D. Prabhakaran, A.T. Boothroyd, R.M. Fernandes, J.G. Analytis, J.E. Moore, J. Orenstein, V. Sunko, Physical Review X 14 (2024).","mla":"Donoway, E., et al. “Multimodal Approach Reveals the Symmetry-Breaking Pathway to the Broken Helix in EuIn2As2.” Physical Review X, vol. 14, no. 3, 031013, American Physical Society, 2024, doi:10.1103/physrevx.14.031013.","ista":"Donoway E, Trevisan TV, Liebman-Peláez A, Day RP, Yamakawa K, Sun Y, Soh JR, Prabhakaran D, Boothroyd AT, Fernandes RM, Analytis JG, Moore JE, Orenstein J, Sunko V. 2024. Multimodal approach reveals the symmetry-breaking pathway to the broken helix in EuIn2As2. Physical Review X. 14(3), 031013.","ama":"Donoway E, Trevisan TV, Liebman-Peláez A, et al. Multimodal approach reveals the symmetry-breaking pathway to the broken helix in EuIn2As2. Physical Review X. 2024;14(3). doi:10.1103/physrevx.14.031013","chicago":"Donoway, E., T. V. Trevisan, A. Liebman-Peláez, R. P. Day, K. Yamakawa, Y. Sun, J. R. Soh, et al. “Multimodal Approach Reveals the Symmetry-Breaking Pathway to the Broken Helix in EuIn2As2.” Physical Review X. American Physical Society, 2024. https://doi.org/10.1103/physrevx.14.031013.","apa":"Donoway, E., Trevisan, T. V., Liebman-Peláez, A., Day, R. P., Yamakawa, K., Sun, Y., … Sunko, V. (2024). Multimodal approach reveals the symmetry-breaking pathway to the broken helix in EuIn2As2. Physical Review X. American Physical Society. https://doi.org/10.1103/physrevx.14.031013"},"scopus_import":"1","month":"07","status":"public","article_number":"031013","issue":"3","publisher":"American Physical Society","publication_status":"published","date_published":"2024-07-22T00:00:00Z","OA_type":"gold","date_updated":"2025-06-10T13:14:20Z","year":"2024","OA_place":"publisher","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","extern":"1","DOAJ_listed":"1","_id":"19816","abstract":[{"lang":"eng","text":"Understanding and manipulating emergent phases, which are themes at the forefront of quantum-materials research, rely on identifying their underlying symmetries. This general principle has been particularly prominent in materials with coupled electronic and magnetic degrees of freedom, in which magnetic order influences the electronic band structure and can lead to exotic topological effects. However, identifying symmetry of a magnetically ordered phase can pose a challenge, particularly in the presence of small domains. Here we introduce a multimodal approach for determining magnetic structures, which combines symmetry-sensitive optical probes, scattering, and group-theoretical analysis. We apply it to EuIn2⁢As2, a material that has received attention as a candidate axion insulator. While first-principles calculations predict this state on the assumption of a simple collinear antiferromagnetic structure, subsequent neutron-scattering measurements reveal a much more intricate magnetic ground state characterized by two coexisting magnetic wave vectors reached by successive thermal phase transitions. The proposed high- and low-temperature phases are a spin helix and a state with interpenetrating helical and Néel antiferromagnetic order termed a “broken helix,” respectively. Employing a multimodal approach, we identify the magnetic structure associated with these two phases of EuIn2⁢As2. We find that the higher-temperature phase is characterized by a variation of the magnetic moment amplitude from layer to layer, with the moment vanishing entirely in every third Eu layer. The lower-temperature structure is similar to the broken helix, with one important difference: Because of local strain, the relative orientation of the magnetic structure and the lattice is not fixed. Consequently, the symmetry required to protect the axion phase is not generically protected in EuIn2⁢As2, but we show that it can be restored if the magnetic structure is tuned with uniaxial strain. Finally, we present a spin Hamiltonian that identifies the spin interactions that account for the complex magnetic order in EuIn2⁢As2. Our work highlights the importance of a multimodal approach in determining the symmetry of complex order parameters."}],"publication":"Physical Review X","quality_controlled":"1","author":[{"full_name":"Donoway, E.","last_name":"Donoway","first_name":"E."},{"full_name":"Trevisan, T. V.","last_name":"Trevisan","first_name":"T. V."},{"first_name":"A.","last_name":"Liebman-Peláez","full_name":"Liebman-Peláez, A."},{"first_name":"R. P.","last_name":"Day","full_name":"Day, R. P."},{"first_name":"K.","full_name":"Yamakawa, K.","last_name":"Yamakawa"},{"first_name":"Y.","last_name":"Sun","full_name":"Sun, Y."},{"first_name":"J. R.","last_name":"Soh","full_name":"Soh, J. R."},{"full_name":"Prabhakaran, D.","last_name":"Prabhakaran","first_name":"D."},{"full_name":"Boothroyd, A. T.","last_name":"Boothroyd","first_name":"A. T."},{"first_name":"R. M.","last_name":"Fernandes","full_name":"Fernandes, R. M."},{"last_name":"Analytis","full_name":"Analytis, J. G.","first_name":"J. G."},{"first_name":"J. E.","last_name":"Moore","full_name":"Moore, J. E."},{"first_name":"J.","last_name":"Orenstein","full_name":"Orenstein, J."},{"full_name":"Sunko, Veronika","last_name":"Sunko","first_name":"Veronika","id":"23cb1cf6-2c7a-11ef-91a4-f72fc19f20b3","orcid":"0000-0003-2724-3523"}],"article_type":"original","fulldoi":"https://doi.org/10.1103/physrevx.14.031013","volume":14,"oa":1,"article_processing_charge":"No","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1103/physrevx.14.031013"}]},{"citation":{"ista":"Frantar E, Castro R, Chen J, Hoefler T, Alistarh D-A. 2024. MARLIN: Mixed-precision auto-regressive parallel inference on Large Language Models, Zenodo, 10.5281/ZENODO.14213091.","chicago":"Frantar, Elias, Roberto Castro, Jiale Chen, Torsten Hoefler, and Dan-Adrian Alistarh. “MARLIN: Mixed-Precision Auto-Regressive Parallel Inference on Large Language Models.” Zenodo, 2024. https://doi.org/10.5281/ZENODO.14213091.","apa":"Frantar, E., Castro, R., Chen, J., Hoefler, T., & Alistarh, D.-A. (2024). MARLIN: Mixed-precision auto-regressive parallel inference on Large Language Models. Zenodo. https://doi.org/10.5281/ZENODO.14213091","ama":"Frantar E, Castro R, Chen J, Hoefler T, Alistarh D-A. MARLIN: Mixed-precision auto-regressive parallel inference on Large Language Models. 2024. doi:10.5281/ZENODO.14213091","ieee":"E. Frantar, R. Castro, J. Chen, T. Hoefler, and D.-A. Alistarh, “MARLIN: Mixed-precision auto-regressive parallel inference on Large Language Models.” Zenodo, 2024.","short":"E. Frantar, R. Castro, J. Chen, T. Hoefler, D.-A. Alistarh, (2024).","mla":"Frantar, Elias, et al. MARLIN: Mixed-Precision Auto-Regressive Parallel Inference on Large Language Models. Zenodo, 2024, doi:10.5281/ZENODO.14213091."},"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"fulldoi":"https://doi.org/10.5281/ZENODO.14213091","corr_author":"1","main_file_link":[{"url":"https://doi.org/10.5281/ZENODO.14213091","open_access":"1"}],"month":"11","oa":1,"article_processing_charge":"No","ddc":["000"],"status":"public","publisher":"Zenodo","date_created":"2025-06-24T06:09:18Z","type":"research_data_reference","has_accepted_license":"1","date_published":"2024-11-24T00:00:00Z","date_updated":"2025-09-30T13:41:56Z","department":[{"_id":"DaAl"}],"doi":"10.5281/ZENODO.14213091","_id":"19884","year":"2024","day":"24","title":"MARLIN: Mixed-precision auto-regressive parallel inference on Large Language Models","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","OA_place":"repository","author":[{"last_name":"Frantar","full_name":"Frantar, Elias","first_name":"Elias","id":"09a8f98d-ec99-11ea-ae11-c063a7b7fe5f"},{"full_name":"Castro, Roberto","last_name":"Castro","first_name":"Roberto"},{"first_name":"Jiale","last_name":"Chen","full_name":"Chen, Jiale","orcid":"0000-0001-5337-5875","id":"4d0a9064-1ff6-11ee-9fa6-ec046c604785"},{"full_name":"Hoefler, Torsten","last_name":"Hoefler","first_name":"Torsten"},{"first_name":"Dan-Adrian","last_name":"Alistarh","full_name":"Alistarh, Dan-Adrian","orcid":"0000-0003-3650-940X","id":"4A899BFC-F248-11E8-B48F-1D18A9856A87"}],"oa_version":"Published Version","related_material":{"record":[{"relation":"used_for_analysis_in","status":"public","id":"19877"}]},"abstract":[{"lang":"eng","text":"This is Marlin, a Mixed Auto-Regressive Linear kernel (and the name of one of the planet's fastest fish), an extremely optimized FP16xINT4 matmul kernel aimed at LLM inference that can deliver close to ideal (4x) speedups up to batchsizes of 16-32 tokens (in contrast to the 1-2 tokens of prior work with comparable speedup).\r\n\r\nAdditionally, it includes Sparse-Marlin, an extension of the MARLIN kernels adding support to 2:4 weight sparsity, achieving 5.3x speedups on NVIDIA GPUs (Ampere/Ada)."}]},{"article_processing_charge":"No","volume":2,"fulldoi":"https://doi.org/10.1038/s44220-024-00315-0","author":[{"first_name":"Maja","last_name":"Neidhart","full_name":"Neidhart, Maja"},{"first_name":"Rikka","full_name":"Kjelkenes, Rikka","last_name":"Kjelkenes"},{"full_name":"Jansone, Karina","last_name":"Jansone","first_name":"Karina"},{"first_name":"Barbora","full_name":"Rehák Bučková, Barbora","last_name":"Rehák Bučková"},{"first_name":"Nathalie","last_name":"Holz","full_name":"Holz, Nathalie"},{"first_name":"Frauke","full_name":"Nees, Frauke","last_name":"Nees"},{"full_name":"Walter, Henrik","last_name":"Walter","first_name":"Henrik"},{"full_name":"Schumann, Gunter","last_name":"Schumann","first_name":"Gunter"},{"first_name":"Michael A.","last_name":"Rapp","full_name":"Rapp, Michael A."},{"first_name":"Tobias","full_name":"Banaschewski, Tobias","last_name":"Banaschewski"},{"last_name":"Schwarz","full_name":"Schwarz, Emanuel","first_name":"Emanuel"},{"full_name":"Marquand, Andre","last_name":"Marquand","first_name":"Andre"},{"last_name":"Ogoh","full_name":"Ogoh, George","first_name":"George"},{"first_name":"Bernd","full_name":"Stahl, Bernd","last_name":"Stahl"},{"full_name":"Young, Allan H.","last_name":"Young","first_name":"Allan H."},{"first_name":"Sylvane","full_name":"Desrivières, Sylvane","last_name":"Desrivières"},{"first_name":"Nicholas","last_name":"Clinton","full_name":"Clinton, Nicholas"},{"first_name":"Paul","last_name":"Thompson","full_name":"Thompson, Paul"},{"first_name":"Ameli","full_name":"Schwalber, Ameli","last_name":"Schwalber"},{"first_name":"Jingyu","last_name":"Liu","full_name":"Liu, Jingyu"},{"first_name":"Vince","last_name":"Calhoun","full_name":"Calhoun, Vince"},{"full_name":"Chang, Xiao","last_name":"Chang","first_name":"Xiao"},{"first_name":"Yunman","full_name":"Xia, Yunman","last_name":"Xia"},{"first_name":"Yanting","last_name":"Gong","full_name":"Gong, Yanting"},{"first_name":"Tianye","full_name":"Jia, Tianye","last_name":"Jia"},{"first_name":"Paul","full_name":"Renner, Paul","last_name":"Renner"},{"first_name":"Sören","last_name":"Hese","full_name":"Hese, Sören"},{"full_name":"Giner, Arantxa","last_name":"Giner","first_name":"Arantxa"},{"full_name":"Sanchez, Mavi","last_name":"Sanchez","first_name":"Mavi"},{"first_name":"Elena","last_name":"Alvarez","full_name":"Alvarez, Elena"},{"last_name":"Spanlang","full_name":"Spanlang, Bernhard","first_name":"Bernhard"},{"first_name":"Charlie","full_name":"Pearmund, Charlie","last_name":"Pearmund"},{"first_name":"Anastasios Polykarpos","last_name":"Athanasiadis","full_name":"Athanasiadis, Anastasios Polykarpos"},{"first_name":"Lisa","last_name":"Otten","full_name":"Otten, Lisa"},{"last_name":"Pitel","full_name":"Pitel, Séverine","first_name":"Séverine"},{"full_name":"Petkoski, Spase","last_name":"Petkoski","first_name":"Spase"},{"full_name":"Jirsa, Viktor","last_name":"Jirsa","first_name":"Viktor"},{"first_name":"Karen","last_name":"Schmitt","full_name":"Schmitt, Karen"},{"full_name":"Wilbertz, Johannes","last_name":"Wilbertz","first_name":"Johannes"},{"last_name":"Patraskaki","full_name":"Patraskaki, Myrto","first_name":"Myrto"},{"first_name":"Peter","last_name":"Sommer","full_name":"Sommer, Peter"},{"first_name":"Stefanie","full_name":"Heilmann-Heimbach, Stefanie","last_name":"Heilmann-Heimbach"},{"first_name":"Carina M.","last_name":"Mathey","full_name":"Mathey, Carina M."},{"first_name":"Abigail","full_name":"Miller, Abigail","last_name":"Miller"},{"last_name":"Claus","full_name":"Claus, Isabelle","first_name":"Isabelle"},{"last_name":"Nöthen","full_name":"Nöthen, Markus M.","first_name":"Markus M."},{"last_name":"Hoffmann","full_name":"Hoffmann, Per","first_name":"Per"},{"first_name":"Andreas J.","full_name":"Forstner, Andreas J.","last_name":"Forstner"},{"first_name":"Alvaro","last_name":"Pastor","full_name":"Pastor, Alvaro"},{"first_name":"Jaime","last_name":"Gallego","full_name":"Gallego, Jaime"},{"last_name":"Orosa","full_name":"Orosa, Francisco Eiroa","first_name":"Francisco Eiroa"},{"first_name":"Guillem Feixas","full_name":"Viapiana, Guillem Feixas","last_name":"Viapiana"},{"first_name":"Mel","last_name":"Slater","full_name":"Slater, Mel"},{"id":"4406F586-F248-11E8-B48F-1D18A9856A87","first_name":"Lena","last_name":"Marr","full_name":"Marr, Lena"},{"full_name":"Novarino, Gaia","last_name":"Novarino","first_name":"Gaia","id":"3E57A680-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-7673-7178"},{"last_name":"Böttger","full_name":"Böttger, Sarah Jane","first_name":"Sarah Jane"},{"full_name":"Tschorn, Mira","last_name":"Tschorn","first_name":"Mira"},{"full_name":"Rapp, Michael","last_name":"Rapp","first_name":"Michael"},{"last_name":"Ask","full_name":"Ask, Helga","first_name":"Helga"},{"full_name":"Fernandez, Sara","last_name":"Fernandez","first_name":"Sara"},{"first_name":"Dennis","full_name":"Van Der Meer, Dennis","last_name":"Van Der Meer"},{"full_name":"Westlye, Lars T.","last_name":"Westlye","first_name":"Lars T."},{"first_name":"Ole A.","full_name":"Andreassen, Ole A.","last_name":"Andreassen"},{"full_name":"Aden, Rieke","last_name":"Aden","first_name":"Rieke"},{"first_name":"Beke","last_name":"Seefried","full_name":"Seefried, Beke"},{"full_name":"Siehl, Sebastian","last_name":"Siehl","first_name":"Sebastian"},{"first_name":"Frauke","full_name":"Nees, Frauke","last_name":"Nees"},{"first_name":"Argyris","full_name":"Stringaris, Argyris","last_name":"Stringaris"},{"first_name":"Heike","full_name":"Tost, Heike","last_name":"Tost"},{"full_name":"Meyer-Lindenberg, Andreas","last_name":"Meyer-Lindenberg","first_name":"Andreas"},{"last_name":"Christmann","full_name":"Christmann, Nina","first_name":"Nina"},{"last_name":"Banks","full_name":"Banks, Jamie","first_name":"Jamie"},{"first_name":"Kerstin","last_name":"Schepanski","full_name":"Schepanski, Kerstin"},{"first_name":"Tatjana","last_name":"Schütz","full_name":"Schütz, Tatjana"},{"first_name":"Ulrike Helene","last_name":"Taron","full_name":"Taron, Ulrike Helene"},{"full_name":"Eils, Roland","last_name":"Eils","first_name":"Roland"},{"first_name":"Jean Charles","full_name":"Roy, Jean Charles","last_name":"Roy"},{"last_name":"Lett","full_name":"Lett, Tristram A.","first_name":"Tristram A."},{"last_name":"Kebir","full_name":"Kebir, Hedi","first_name":"Hedi"},{"last_name":"Polemiti","full_name":"Polemiti, Elli","first_name":"Elli"},{"last_name":"Hitchen","full_name":"Hitchen, Esther","first_name":"Esther"},{"first_name":"Marcel","last_name":"Jentsch","full_name":"Jentsch, Marcel"},{"full_name":"Serin, Emin","last_name":"Serin","first_name":"Emin"},{"first_name":"Antoine","last_name":"Bernas","full_name":"Bernas, Antoine"},{"first_name":"Nilakshi","full_name":"Vaidya, Nilakshi","last_name":"Vaidya"},{"last_name":"Twardziok","full_name":"Twardziok, Sven","first_name":"Sven"},{"first_name":"Markus","last_name":"Ralser","full_name":"Ralser, Markus"},{"last_name":"Heinz","full_name":"Heinz, Andreas","first_name":"Andreas"}],"article_type":"comment","abstract":[{"text":"This Comment presents a high-level protocol for data harmonization within large cohorts, in which it postulates four main steps including (1) expert review, (2) pre-statistical harmonization, (3) statistical harmonization, and (4) validation.","lang":"eng"}],"quality_controlled":"1","publication":"Nature Mental Health","_id":"20039","year":"2024","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_published":"2024-10-01T00:00:00Z","date_updated":"2025-07-22T08:59:10Z","OA_type":"closed access","publication_status":"published","publisher":"Springer Nature","issue":"10","status":"public","month":"10","citation":{"mla":"Neidhart, Maja, et al. “A Protocol for Data Harmonization in Large Cohorts.” Nature Mental Health, vol. 2, no. 10, Springer Nature, 2024, pp. 1134–37, doi:10.1038/s44220-024-00315-0.","short":"M. Neidhart, R. Kjelkenes, K. Jansone, B. Rehák Bučková, N. Holz, F. Nees, H. Walter, G. Schumann, M.A. Rapp, T. Banaschewski, E. Schwarz, A. Marquand, G. Ogoh, B. Stahl, A.H. Young, S. Desrivières, N. Clinton, P. Thompson, A. Schwalber, J. Liu, V. Calhoun, X. Chang, Y. Xia, Y. Gong, T. Jia, P. Renner, S. Hese, A. Giner, M. Sanchez, E. Alvarez, B. Spanlang, C. Pearmund, A.P. Athanasiadis, L. Otten, S. Pitel, S. Petkoski, V. Jirsa, K. Schmitt, J. Wilbertz, M. Patraskaki, P. Sommer, S. Heilmann-Heimbach, C.M. Mathey, A. Miller, I. Claus, M.M. Nöthen, P. Hoffmann, A.J. Forstner, A. Pastor, J. Gallego, F.E. Orosa, G.F. Viapiana, M. Slater, L. Marr, G. Novarino, S.J. Böttger, M. Tschorn, M. Rapp, H. Ask, S. Fernandez, D. Van Der Meer, L.T. Westlye, O.A. Andreassen, R. Aden, B. Seefried, S. Siehl, F. Nees, A. Stringaris, H. Tost, A. Meyer-Lindenberg, N. Christmann, J. Banks, K. Schepanski, T. Schütz, U.H. Taron, R. Eils, J.C. Roy, T.A. Lett, H. Kebir, E. Polemiti, E. Hitchen, M. Jentsch, E. Serin, A. Bernas, N. Vaidya, S. Twardziok, M. Ralser, A. Heinz, Nature Mental Health 2 (2024) 1134–1137.","ieee":"M. Neidhart et al., “A protocol for data harmonization in large cohorts,” Nature Mental Health, vol. 2, no. 10. Springer Nature, pp. 1134–1137, 2024.","apa":"Neidhart, M., Kjelkenes, R., Jansone, K., Rehák Bučková, B., Holz, N., Nees, F., … Heinz, A. (2024). A protocol for data harmonization in large cohorts. Nature Mental Health. Springer Nature. https://doi.org/10.1038/s44220-024-00315-0","ama":"Neidhart M, Kjelkenes R, Jansone K, et al. A protocol for data harmonization in large cohorts. Nature Mental Health. 2024;2(10):1134-1137. doi:10.1038/s44220-024-00315-0","chicago":"Neidhart, Maja, Rikka Kjelkenes, Karina Jansone, Barbora Rehák Bučková, Nathalie Holz, Frauke Nees, Henrik Walter, et al. “A Protocol for Data Harmonization in Large Cohorts.” Nature Mental Health. Springer Nature, 2024. https://doi.org/10.1038/s44220-024-00315-0.","ista":"Neidhart M, Kjelkenes R, Jansone K, Rehák Bučková B, Holz N, Nees F, Walter H, Schumann G, Rapp MA, Banaschewski T, Schwarz E, Marquand A, Ogoh G, Stahl B, Young AH, Desrivières S, Clinton N, Thompson P, Schwalber A, Liu J, Calhoun V, Chang X, Xia Y, Gong Y, Jia T, Renner P, Hese S, Giner A, Sanchez M, Alvarez E, Spanlang B, Pearmund C, Athanasiadis AP, Otten L, Pitel S, Petkoski S, Jirsa V, Schmitt K, Wilbertz J, Patraskaki M, Sommer P, Heilmann-Heimbach S, Mathey CM, Miller A, Claus I, Nöthen MM, Hoffmann P, Forstner AJ, Pastor A, Gallego J, Orosa FE, Viapiana GF, Slater M, Marr L, Novarino G, Böttger SJ, Tschorn M, Rapp M, Ask H, Fernandez S, Van Der Meer D, Westlye LT, Andreassen OA, Aden R, Seefried B, Siehl S, Nees F, Stringaris A, Tost H, Meyer-Lindenberg A, Christmann N, Banks J, Schepanski K, Schütz T, Taron UH, Eils R, Roy JC, Lett TA, Kebir H, Polemiti E, Hitchen E, Jentsch M, Serin E, Bernas A, Vaidya N, Twardziok S, Ralser M, Heinz A. 2024. A protocol for data harmonization in large cohorts. Nature Mental Health. 2(10), 1134–1137."},"scopus_import":"1","intvolume":" 2","oa_version":"None","acknowledgement":"Funded by the European Union. Complementary funding was received by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee (10041392 and 10038599). Views and opinions expressed are however those of the author(s) only and do not necessarily reflect those of the European Union, the European Health and Digital Executive Agency (HADEA) or UKRI. The European Union, HADEA or UKRI cannot be held responsible for them. This work received support from the Chinese Ministry for Science and Technology (MOST), the Horizon 2020-funded European Research Council advanced grant ‘STRATIFY’ (695313); the German Research Foundation (COPE; 675346; NE 1383/15-1 and BA 2088/7-1 (CoviDrug)), the National Natural Science Foundation of China grant 82150710554, the Hector II foundation and the German Center for Mental Health (DZPG) (01EE2301A, 01EE2304A, 01EE2301D).","publication_identifier":{"eissn":["2731-6076"]},"day":"01","title":"A protocol for data harmonization in large cohorts","page":"1134-1137","department":[{"_id":"GaNo"}],"doi":"10.1038/s44220-024-00315-0","date_created":"2025-07-20T22:02:04Z","type":"journal_article","language":[{"iso":"eng"}]},{"article_processing_charge":"No","oa":1,"main_file_link":[{"url":"https://doi.org/10.1002/adma.202470004","open_access":"1"}],"volume":36,"fulldoi":"https://doi.org/10.1002/adma.202470004","date_published":"2024-01-04T00:00:00Z","OA_type":"free access","date_updated":"2026-06-18T18:19:28Z","publication_status":"published","abstract":[{"lang":"eng","text":"In article number 2305128, Qing Sun, Shang Wang, Yanhong Tian, Andreu Cabot, and co-workers report an investigation of the energy-storage mechanism of a layered Bi2Te3-based cathode for aqueous zinc-ion batteries (ZIBs). They demonstrate that the zinc ion is not inserted into the cathode as previously assumed; in contrast, proton charge-storage dominates the process. They also demonstrate the great application prospects of aqueous ZIBs in flexible electronics via jet printing technology."}],"publication":"Advanced Materials","quality_controlled":"1","author":[{"full_name":"Zeng, Guifang","last_name":"Zeng","first_name":"Guifang"},{"first_name":"Qing","full_name":"Sun, Qing","last_name":"Sun"},{"first_name":"Sharona","full_name":"Horta, Sharona","last_name":"Horta","id":"03a7e858-01b1-11ec-8b71-99ae6c4a05bc"},{"first_name":"Shang","full_name":"Wang, Shang","last_name":"Wang"},{"first_name":"Xuan","last_name":"Lu","full_name":"Lu, Xuan"},{"first_name":"Chao Yue","full_name":"Zhang, Chao Yue","last_name":"Zhang"},{"full_name":"Li, Jing","last_name":"Li","first_name":"Jing"},{"full_name":"Li, Junshan","last_name":"Li","first_name":"Junshan"},{"first_name":"Lijie","full_name":"Ci, Lijie","last_name":"Ci"},{"full_name":"Tian, Yanhong","last_name":"Tian","first_name":"Yanhong"},{"full_name":"Ibáñez, Maria","last_name":"Ibáñez","first_name":"Maria","id":"43C61214-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5013-2843"},{"full_name":"Cabot, Andreu","last_name":"Cabot","first_name":"Andreu"}],"year":"2024","OA_place":"publisher","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"20057","month":"01","intvolume":" 36","citation":{"ieee":"G. Zeng et al., A layered Bi2Te3@PPy cathode for aqueous Zinc‐Ion batteries: Mechanism and application in printed flexible batteries, vol. 36, no. 1. Wiley, 2024.","short":"G. Zeng, Q. Sun, S. Horta, S. Wang, X. Lu, C.Y. Zhang, J. Li, J. Li, L. Ci, Y. Tian, M. Ibáñez, A. Cabot, A Layered Bi2Te3@PPy Cathode for Aqueous Zinc‐Ion Batteries: Mechanism and Application in Printed Flexible Batteries, Wiley, 2024.","mla":"Zeng, Guifang, et al. “A Layered Bi2Te3@PPy Cathode for Aqueous Zinc‐Ion Batteries: Mechanism and Application in Printed Flexible Batteries.” Advanced Materials, vol. 36, no. 1, 2470004, Wiley, 2024, doi:10.1002/adma.202470004.","ista":"Zeng G, Sun Q, Horta S, Wang S, Lu X, Zhang CY, Li J, Li J, Ci L, Tian Y, Ibáñez M, Cabot A. 2024. A layered Bi2Te3@PPy cathode for aqueous Zinc‐Ion batteries: Mechanism and application in printed flexible batteries, Wiley,p.","chicago":"Zeng, Guifang, Qing Sun, Sharona Horta, Shang Wang, Xuan Lu, Chao Yue Zhang, Jing Li, et al. A Layered Bi2Te3@PPy Cathode for Aqueous Zinc‐Ion Batteries: Mechanism and Application in Printed Flexible Batteries. Advanced Materials. Vol. 36. Wiley, 2024. https://doi.org/10.1002/adma.202470004.","apa":"Zeng, G., Sun, Q., Horta, S., Wang, S., Lu, X., Zhang, C. Y., … Cabot, A. (2024). A layered Bi2Te3@PPy cathode for aqueous Zinc‐Ion batteries: Mechanism and application in printed flexible batteries. Advanced Materials (Vol. 36). Wiley. https://doi.org/10.1002/adma.202470004","ama":"Zeng G, Sun Q, Horta S, et al. A Layered Bi2Te3@PPy Cathode for Aqueous Zinc‐Ion Batteries: Mechanism and Application in Printed Flexible Batteries. Vol 36. Wiley; 2024. doi:10.1002/adma.202470004"},"publisher":"Wiley","status":"public","article_number":"2470004","issue":"1","ddc":["530"],"department":[{"_id":"MaIb"}],"doi":"10.1002/adma.202470004","type":"other_academic_publication","language":[{"iso":"eng"}],"date_created":"2025-07-21T08:53:06Z","oa_version":"Published Version","day":"04","title":"A layered Bi2Te3@PPy cathode for aqueous Zinc‐Ion batteries: Mechanism and application in printed flexible batteries","publication_identifier":{"issn":["0935-9648"],"eissn":["1521-4095"]}},{"doi":"10.62876/lr.vi45.6481","license":"https://creativecommons.org/licenses/by-nc-sa/4.0/","file":[{"creator":"dernst","success":1,"content_type":"application/pdf","checksum":"04c950f26ad68455c3a303c87ccf2349","date_created":"2025-09-09T08:48:53Z","access_level":"open_access","file_id":"20317","file_name":"2025_Logoi_CarlsDiamante.pdf","file_size":354124,"relation":"main_file","date_updated":"2025-09-09T08:48:53Z"}],"date_created":"2025-07-21T10:35:39Z","type":"journal_article","has_accepted_license":"1","language":[{"iso":"eng"}],"oa_version":"Published Version","acknowledgement":"Sidney Carls-Diamante was supported by the Federal Ministry of Education and Research (BMBF) and the Baden-Württemberg Ministry of Science as part of the Excellence Strategy of the German Federal and State Governments. Alice Laciny was supported by the 2021 UNESCO L’Oréal grant for women in science, awarded for the project “Neurodiversity and anthropomorphism in social insect research”.","publication_identifier":{"issn":["2790-5144"],"eissn":["1316-693X"]},"day":"19","page":"88-114","title":"Stuck in uncertainty: A predictive processing/ active inference account of procrastination-like behaviour in autism","corr_author":"1","month":"03","PlanS_conform":"1","citation":{"ista":"Carls-Diamante S, Laciny A. 2024. Stuck in uncertainty: A predictive processing/ active inference account of procrastination-like behaviour in autism. Lógoi. Revista de Filosofía. (45), 88–114.","apa":"Carls-Diamante, S., & Laciny, A. (2024). Stuck in uncertainty: A predictive processing/ active inference account of procrastination-like behaviour in autism. Lógoi. Revista de Filosofía. Universidad Católica Andrés Bello. https://doi.org/10.62876/lr.vi45.6481","ama":"Carls-Diamante S, Laciny A. Stuck in uncertainty: A predictive processing/ active inference account of procrastination-like behaviour in autism. Lógoi Revista de Filosofía. 2024;(45):88-114. doi:10.62876/lr.vi45.6481","chicago":"Carls-Diamante, Sidney, and Alice Laciny. “Stuck in Uncertainty: A Predictive Processing/ Active Inference Account of Procrastination-like Behaviour in Autism.” Lógoi. Revista de Filosofía. Universidad Católica Andrés Bello, 2024. https://doi.org/10.62876/lr.vi45.6481.","ieee":"S. Carls-Diamante and A. Laciny, “Stuck in uncertainty: A predictive processing/ active inference account of procrastination-like behaviour in autism,” Lógoi. Revista de Filosofía, no. 45. Universidad Católica Andrés Bello, pp. 88–114, 2024.","short":"S. Carls-Diamante, A. Laciny, Lógoi. Revista de Filosofía (2024) 88–114.","mla":"Carls-Diamante, Sidney, and Alice Laciny. “Stuck in Uncertainty: A Predictive Processing/ Active Inference Account of Procrastination-like Behaviour in Autism.” Lógoi. Revista de Filosofía, no. 45, Universidad Católica Andrés Bello, 2024, pp. 88–114, doi:10.62876/lr.vi45.6481."},"publisher":"Universidad Católica Andrés Bello","issue":"45","ddc":["570"],"status":"public","file_date_updated":"2025-09-09T08:48:53Z","date_published":"2024-03-19T00:00:00Z","date_updated":"2025-09-09T08:51:00Z","OA_type":"gold","publication_status":"published","article_type":"original","author":[{"last_name":"Carls-Diamante","full_name":"Carls-Diamante, Sidney","first_name":"Sidney"},{"id":"accace3f-3f77-11eb-b1df-f1221b04cb95","orcid":"0000-0002-5485-1391","last_name":"Laciny","full_name":"Laciny, Alice","first_name":"Alice"}],"abstract":[{"text":"Un fenómeno a menudo asociado con el autismo es un modo atípico de función ejecutiva, cuyas manifestaciones incluyen dificultad para iniciar tareas. En algunos casos, esto va acompañado de sentimientos de inercia y sensaciones que pueden describirse como inquietud y parálisis simultáneas. En consecuencia, la dificultad para iniciar las tareas puede dar lugar a la procrastinación, ya sea simplemente posponiendo el trabajo en la tarea objetivo o realizando otras tareas no relacionadas antes de dedicarse a la tarea objetivo. Curiosamente, sin embargo, también está documentado que, una vez iniciada una tarea, los autistas pueden centrarse en ella intensamente y durante periodos prolongados de tiempo, especialmente cuando les resulta interesante. \r\nEste trabajo utiliza el procesamiento predictivo y la inferencia activa para modelar la relación entre la función ejecutiva, la procrastinación y la hiperfocalización en el autismo. Este modelo integra las causas conocidas y propuestas de los déficits en la función ejecutiva y el papel que desempeña el interés en la regulación de la atención y la motivación. El modelo propone que la procrastinación es el resultado de procesos diferenciales de minimización de errores de predicción, como la ponderación de estímulos sensoriales. Se discuten los vínculos con modelos propuestos previamente, como la coherencia central débil (CCC), y la teoría de los priores altos e inflexibles de los errores de predicción en el autismo (HIPPEA).","lang":"spa"},{"lang":"eng","text":"A phenomenon often associated with autism is an atypical mode of executive function, manifestations of which include difficulty in initiating tasks. In some cases, this is accompanied by feelings of inertia and sensations that can be described as simultaneous restlessness and paralysis. Consequently, difficulty in getting started on tasks can result in procrastination, either by simply postponing working on the target task or by performing other unrelated tasks before engaging in the target task. Interestingly, however, it is also documented that once a task has been started, autistic persons may focus on it intensely and for prolonged periods of time, especially when it is interesting to them.This paper uses predictive processing and active inference to model therelationship between executive function, procrastination, and hyperfocus in autism. This model integrates the known and proposed causes of deficits in executive function and the role played by interest in attention regulation and motivation. The model proposes that procrastination is the outcome of differential prediction-error minimizing processes, such as weighting of sensory stimuli. Links to previously proposed models such as weak central coherence (WCC), and the theory of high, inflexible priors of prediction errors in autism (HIPPEA) are discussed"}],"quality_controlled":"1","publication":"Lógoi. Revista de Filosofía","DOAJ_listed":"1","_id":"20060","year":"2024","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","OA_place":"publisher","article_processing_charge":"Yes","oa":1,"tmp":{"name":"Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode","image":"/images/cc_by_nc_sa.png","short":"CC BY-NC-SA (4.0)"},"fulldoi":"https://doi.org/10.62876/lr.vi45.6481"},{"day":"18","year":"2024","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"PyDaddy: A Python Package for Discovering SDEs from Time Series Data","_id":"20121","acknowledgement":"This study was partially funded by Science and Engineering Research Board, Department of Science and Technology, Government of India to Vishwesha Guttal.","abstract":[{"lang":"eng","text":"PyDaddy is an open source package which is a key contribution of the manuscript Nabeel et al, arXiv:2205.02645. The basic scientific premise for this package is to discover the nature of stochasticity in ecological time series datasets. It is well known that the stochasticity can affect the dynamics of ecological systems in counter-intuitive ways. Without understanding the equations (typically, in the form of stochastic differential equations or SDEs, in short) that govern the dynamics of populations or ecosystems, it's challenging to determine the impact of randomness on real datasets. In this manuscript and accompanying package, we introduce a methodology for discovering equations (SDEs) that transforms time series data of state variables into stochastic differential equations. This approach merges traditional stochastic calculus with modern equation-discovery techniques. We showcase the generality of our method through various applications and discuss its limitations and potential pitfalls, offering diagnostic measures to address these challenges."}],"author":[{"full_name":"Nabeel, Arshed","last_name":"Nabeel","first_name":"Arshed"},{"last_name":"Karichannavar","full_name":"Karichannavar, Ashwin","first_name":"Ashwin"},{"first_name":"Shuaib","last_name":"Palathingal","full_name":"Palathingal, Shuaib"},{"first_name":"Jitesh","full_name":"Jhawar, Jitesh","last_name":"Jhawar"},{"first_name":"David","last_name":"Brückner","full_name":"Brückner, David","orcid":"0000-0001-7205-2975","id":"e1e86031-6537-11eb-953a-f7ab92be508d"},{"first_name":"Masila","last_name":"Danny Raj","full_name":"Danny Raj, Masila"},{"last_name":"Guttal","full_name":"Guttal, Vishwesha","first_name":"Vishwesha"}],"related_material":{"record":[{"relation":"used_for_analysis_in","id":"20056","status":"public"}]},"oa_version":"Published Version","type":"research_data_reference","has_accepted_license":"1","date_created":"2025-08-05T06:49:59Z","doi":"10.5281/ZENODO.7137151","department":[{"_id":"EdHa"}],"date_published":"2024-09-18T00:00:00Z","date_updated":"2025-09-30T14:14:42Z","status":"public","ddc":["570"],"publisher":"Zenodo","fulldoi":"https://doi.org/10.5281/ZENODO.7137151","citation":{"short":"A. Nabeel, A. Karichannavar, S. Palathingal, J. Jhawar, D. Brückner, M. Danny Raj, V. Guttal, (2024).","ieee":"A. Nabeel et al., “PyDaddy: A Python Package for Discovering SDEs from Time Series Data.” Zenodo, 2024.","mla":"Nabeel, Arshed, et al. PyDaddy: A Python Package for Discovering SDEs from Time Series Data. Zenodo, 2024, doi:10.5281/ZENODO.7137151.","ista":"Nabeel A, Karichannavar A, Palathingal S, Jhawar J, Brückner D, Danny Raj M, Guttal V. 2024. PyDaddy: A Python Package for Discovering SDEs from Time Series Data, Zenodo, 10.5281/ZENODO.7137151.","apa":"Nabeel, A., Karichannavar, A., Palathingal, S., Jhawar, J., Brückner, D., Danny Raj, M., & Guttal, V. (2024). PyDaddy: A Python Package for Discovering SDEs from Time Series Data. Zenodo. https://doi.org/10.5281/ZENODO.7137151","chicago":"Nabeel, Arshed, Ashwin Karichannavar, Shuaib Palathingal, Jitesh Jhawar, David Brückner, Masila Danny Raj, and Vishwesha Guttal. “PyDaddy: A Python Package for Discovering SDEs from Time Series Data.” Zenodo, 2024. https://doi.org/10.5281/ZENODO.7137151.","ama":"Nabeel A, Karichannavar A, Palathingal S, et al. PyDaddy: A Python Package for Discovering SDEs from Time Series Data. 2024. doi:10.5281/ZENODO.7137151"},"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"oa":1,"article_processing_charge":"No","month":"09","main_file_link":[{"open_access":"1","url":"https://doi.org/10.5281/zenodo.7137151"}]},{"article_processing_charge":"No","fulldoi":"https://doi.org/10.1038/s44220-024-00317-y","volume":2,"date_updated":"2025-08-11T06:44:03Z","OA_type":"closed access","date_published":"2024-10-01T00:00:00Z","publication_status":"published","author":[{"first_name":"Sylvane","last_name":"Desrivières","full_name":"Desrivières, Sylvane"},{"first_name":"Abigail","last_name":"Miller","full_name":"Miller, Abigail"},{"first_name":"Carina M.","last_name":"Mathey","full_name":"Mathey, Carina M."},{"first_name":"Xinyang","full_name":"Yu, Xinyang","last_name":"Yu"},{"first_name":"Di","full_name":"Chen, Di","last_name":"Chen"},{"last_name":"Agunbiade","full_name":"Agunbiade, Kofoworola","first_name":"Kofoworola"},{"first_name":"Stefanie","full_name":"Heilmann-Heimbach, Stefanie","last_name":"Heilmann-Heimbach"},{"first_name":"Andreas J.","full_name":"Forstner, Andreas J.","last_name":"Forstner"},{"full_name":"Schumann, Gunter","last_name":"Schumann","first_name":"Gunter"},{"first_name":"Per","full_name":"Hoffmann, Per","last_name":"Hoffmann"},{"first_name":"Markus M.","last_name":"Nöthen","full_name":"Nöthen, Markus M."},{"full_name":"Ogoh, George","last_name":"Ogoh","first_name":"George"},{"first_name":"Bernd","full_name":"Stahl, Bernd","last_name":"Stahl"},{"first_name":"Allan H.","last_name":"Young","full_name":"Young, Allan H."},{"last_name":"Clinton","full_name":"Clinton, Nicholas","first_name":"Nicholas"},{"last_name":"Thompson","full_name":"Thompson, Paul","first_name":"Paul"},{"first_name":"Ameli","full_name":"Schwalber, Ameli","last_name":"Schwalber"},{"first_name":"Jingyu","full_name":"Liu, Jingyu","last_name":"Liu"},{"full_name":"Calhoun, Vince","last_name":"Calhoun","first_name":"Vince"},{"first_name":"Xiao","full_name":"Chang, Xiao","last_name":"Chang"},{"first_name":"Yunman","full_name":"Xia, Yunman","last_name":"Xia"},{"full_name":"Gong, Yanting","last_name":"Gong","first_name":"Yanting"},{"last_name":"Jia","full_name":"Jia, Tianye","first_name":"Tianye"},{"first_name":"Paul","full_name":"Renner, Paul","last_name":"Renner"},{"first_name":"Sören","last_name":"Hese","full_name":"Hese, Sören"},{"first_name":"Arantxa","last_name":"Giner","full_name":"Giner, Arantxa"},{"first_name":"Mavi","full_name":"Sanchez, Mavi","last_name":"Sanchez"},{"last_name":"Alvarez","full_name":"Alvarez, Elena","first_name":"Elena"},{"first_name":"Bernhard","last_name":"Spanlang","full_name":"Spanlang, Bernhard"},{"first_name":"Charlie","full_name":"Pearmund, Charlie","last_name":"Pearmund"},{"full_name":"Athanasiadis, Anastasios Polykarpos","last_name":"Athanasiadis","first_name":"Anastasios Polykarpos"},{"first_name":"Lisa","full_name":"Otten, Lisa","last_name":"Otten"},{"first_name":"Séverine","full_name":"Pitel, Séverine","last_name":"Pitel"},{"full_name":"Petkoski, Spase","last_name":"Petkoski","first_name":"Spase"},{"last_name":"Jirsa","full_name":"Jirsa, Viktor","first_name":"Viktor"},{"first_name":"Karen","last_name":"Schmitt","full_name":"Schmitt, Karen"},{"last_name":"Wilbertz","full_name":"Wilbertz, Johannes","first_name":"Johannes"},{"last_name":"Patraskaki","full_name":"Patraskaki, Myrto","first_name":"Myrto"},{"last_name":"Sommer","full_name":"Sommer, Peter","first_name":"Peter"},{"first_name":"Isabelle","last_name":"Claus","full_name":"Claus, Isabelle"},{"full_name":"Pastor, Alvaro","last_name":"Pastor","first_name":"Alvaro"},{"full_name":"Gallego, Jaime","last_name":"Gallego","first_name":"Jaime"},{"first_name":"Francisco Eiroa","full_name":"Orosa, Francisco Eiroa","last_name":"Orosa"},{"last_name":"Viapiana","full_name":"Viapiana, Guillem Feixas","first_name":"Guillem Feixas"},{"first_name":"Mel","last_name":"Slater","full_name":"Slater, Mel"},{"first_name":"Lena","full_name":"Marr, Lena","last_name":"Marr","id":"4406F586-F248-11E8-B48F-1D18A9856A87"},{"id":"3E57A680-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-7673-7178","last_name":"Novarino","full_name":"Novarino, Gaia","first_name":"Gaia"},{"full_name":"Marquand, Andre","last_name":"Marquand","first_name":"Andre"},{"full_name":"Böttger, Sarah Jane","last_name":"Böttger","first_name":"Sarah Jane"},{"full_name":"Tschorn, Mira","last_name":"Tschorn","first_name":"Mira"},{"first_name":"Michael","full_name":"Rapp, Michael","last_name":"Rapp"},{"first_name":"Helga","full_name":"Ask, Helga","last_name":"Ask"},{"full_name":"Kjelkenes, Rikka","last_name":"Kjelkenes","first_name":"Rikka"},{"first_name":"Sara","full_name":"Fernandez, Sara","last_name":"Fernandez"},{"last_name":"Van Der Meer","full_name":"Van Der Meer, Dennis","first_name":"Dennis"},{"last_name":"Westlye","full_name":"Westlye, Lars T.","first_name":"Lars T."},{"first_name":"Ole A.","full_name":"Andreassen, Ole A.","last_name":"Andreassen"},{"first_name":"Rieke","last_name":"Aden","full_name":"Aden, Rieke"},{"last_name":"Seefried","full_name":"Seefried, Beke","first_name":"Beke"},{"first_name":"Sebastian","last_name":"Siehl","full_name":"Siehl, Sebastian"},{"first_name":"Frauke","last_name":"Nees","full_name":"Nees, Frauke"},{"last_name":"Neidhart","full_name":"Neidhart, Maja","first_name":"Maja"},{"first_name":"Argyris","full_name":"Stringaris, Argyris","last_name":"Stringaris"},{"first_name":"Emanuel","full_name":"Schwarz, Emanuel","last_name":"Schwarz"},{"last_name":"Holz","full_name":"Holz, Nathalie","first_name":"Nathalie"},{"first_name":"Heike","last_name":"Tost","full_name":"Tost, Heike"},{"full_name":"Meyer-Lindenberg, Andreas","last_name":"Meyer-Lindenberg","first_name":"Andreas"},{"first_name":"Nina","last_name":"Christmann","full_name":"Christmann, Nina"},{"last_name":"Jansone","full_name":"Jansone, Karina","first_name":"Karina"},{"full_name":"Banaschewski, Tobias","last_name":"Banaschewski","first_name":"Tobias"},{"last_name":"Banks","full_name":"Banks, Jamie","first_name":"Jamie"},{"first_name":"Kerstin","full_name":"Schepanski, Kerstin","last_name":"Schepanski"},{"first_name":"Tatjana","full_name":"Schütz, Tatjana","last_name":"Schütz"},{"last_name":"Taron","full_name":"Taron, Ulrike Helene","first_name":"Ulrike Helene"},{"full_name":"Eils, Roland","last_name":"Eils","first_name":"Roland"},{"last_name":"Roy","full_name":"Roy, Jean Charles","first_name":"Jean Charles"},{"last_name":"Lett","full_name":"Lett, Tristram A.","first_name":"Tristram A."},{"first_name":"Hedi","last_name":"Kebir","full_name":"Kebir, Hedi"},{"first_name":"Elli","full_name":"Polemiti, Elli","last_name":"Polemiti"},{"first_name":"Esther","full_name":"Hitchen, Esther","last_name":"Hitchen"},{"first_name":"Marcel","last_name":"Jentsch","full_name":"Jentsch, Marcel"},{"last_name":"Serin","full_name":"Serin, Emin","first_name":"Emin"},{"first_name":"Antoine","full_name":"Bernas, Antoine","last_name":"Bernas"},{"first_name":"Nilakshi","full_name":"Vaidya, Nilakshi","last_name":"Vaidya"},{"first_name":"Sven","last_name":"Twardziok","full_name":"Twardziok, Sven"},{"first_name":"Markus","last_name":"Ralser","full_name":"Ralser, Markus"},{"last_name":"Heinz","full_name":"Heinz, Andreas","first_name":"Andreas"},{"full_name":"Walter, Henrik","last_name":"Walter","first_name":"Henrik"}],"article_type":"comment","quality_controlled":"1","publication":"Nature Mental Health","abstract":[{"text":"Integrative analyses that incorporate different levels of ‘-omics’ data represent a powerful tool for deciphering the biological mechanisms that underlie environmental influences on mental health and disease. This Comment highlights various aspects of such multi-omics approaches, using the example of the EU-funded environMENTAL project.","lang":"eng"}],"_id":"20156","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2024","month":"10","scopus_import":"1","citation":{"ista":"Desrivières S, Miller A, Mathey CM, Yu X, Chen D, Agunbiade K, Heilmann-Heimbach S, Forstner AJ, Schumann G, Hoffmann P, Nöthen MM, Ogoh G, Stahl B, Young AH, Clinton N, Thompson P, Schwalber A, Liu J, Calhoun V, Chang X, Xia Y, Gong Y, Jia T, Renner P, Hese S, Giner A, Sanchez M, Alvarez E, Spanlang B, Pearmund C, Athanasiadis AP, Otten L, Pitel S, Petkoski S, Jirsa V, Schmitt K, Wilbertz J, Patraskaki M, Sommer P, Claus I, Pastor A, Gallego J, Orosa FE, Viapiana GF, Slater M, Marr L, Novarino G, Marquand A, Böttger SJ, Tschorn M, Rapp M, Ask H, Kjelkenes R, Fernandez S, Van Der Meer D, Westlye LT, Andreassen OA, Aden R, Seefried B, Siehl S, Nees F, Neidhart M, Stringaris A, Schwarz E, Holz N, Tost H, Meyer-Lindenberg A, Christmann N, Jansone K, Banaschewski T, Banks J, Schepanski K, Schütz T, Taron UH, Eils R, Roy JC, Lett TA, Kebir H, Polemiti E, Hitchen E, Jentsch M, Serin E, Bernas A, Vaidya N, Twardziok S, Ralser M, Heinz A, Walter H. 2024. Multi-omics analyses of the environMENTAL project provide insights into mental health and disease. Nature Mental Health. 2(10), 1131–1133.","ama":"Desrivières S, Miller A, Mathey CM, et al. Multi-omics analyses of the environMENTAL project provide insights into mental health and disease. Nature Mental Health. 2024;2(10):1131-1133. doi:10.1038/s44220-024-00317-y","apa":"Desrivières, S., Miller, A., Mathey, C. M., Yu, X., Chen, D., Agunbiade, K., … Walter, H. (2024). Multi-omics analyses of the environMENTAL project provide insights into mental health and disease. Nature Mental Health. Springer Nature. https://doi.org/10.1038/s44220-024-00317-y","chicago":"Desrivières, Sylvane, Abigail Miller, Carina M. Mathey, Xinyang Yu, Di Chen, Kofoworola Agunbiade, Stefanie Heilmann-Heimbach, et al. “Multi-Omics Analyses of the EnvironMENTAL Project Provide Insights into Mental Health and Disease.” Nature Mental Health. Springer Nature, 2024. https://doi.org/10.1038/s44220-024-00317-y.","ieee":"S. Desrivières et al., “Multi-omics analyses of the environMENTAL project provide insights into mental health and disease,” Nature Mental Health, vol. 2, no. 10. Springer Nature, pp. 1131–1133, 2024.","short":"S. Desrivières, A. Miller, C.M. Mathey, X. Yu, D. Chen, K. Agunbiade, S. Heilmann-Heimbach, A.J. Forstner, G. Schumann, P. Hoffmann, M.M. Nöthen, G. Ogoh, B. Stahl, A.H. Young, N. Clinton, P. Thompson, A. Schwalber, J. Liu, V. Calhoun, X. Chang, Y. Xia, Y. Gong, T. Jia, P. Renner, S. Hese, A. Giner, M. Sanchez, E. Alvarez, B. Spanlang, C. Pearmund, A.P. Athanasiadis, L. Otten, S. Pitel, S. Petkoski, V. Jirsa, K. Schmitt, J. Wilbertz, M. Patraskaki, P. Sommer, I. Claus, A. Pastor, J. Gallego, F.E. Orosa, G.F. Viapiana, M. Slater, L. Marr, G. Novarino, A. Marquand, S.J. Böttger, M. Tschorn, M. Rapp, H. Ask, R. Kjelkenes, S. Fernandez, D. Van Der Meer, L.T. Westlye, O.A. Andreassen, R. Aden, B. Seefried, S. Siehl, F. Nees, M. Neidhart, A. Stringaris, E. Schwarz, N. Holz, H. Tost, A. Meyer-Lindenberg, N. Christmann, K. Jansone, T. Banaschewski, J. Banks, K. Schepanski, T. Schütz, U.H. Taron, R. Eils, J.C. Roy, T.A. Lett, H. Kebir, E. Polemiti, E. Hitchen, M. Jentsch, E. Serin, A. Bernas, N. Vaidya, S. Twardziok, M. Ralser, A. Heinz, H. Walter, Nature Mental Health 2 (2024) 1131–1133.","mla":"Desrivières, Sylvane, et al. “Multi-Omics Analyses of the EnvironMENTAL Project Provide Insights into Mental Health and Disease.” Nature Mental Health, vol. 2, no. 10, Springer Nature, 2024, pp. 1131–33, doi:10.1038/s44220-024-00317-y."},"intvolume":" 2","publisher":"Springer Nature","issue":"10","status":"public","doi":"10.1038/s44220-024-00317-y","department":[{"_id":"GaNo"}],"date_created":"2025-08-10T22:01:30Z","language":[{"iso":"eng"}],"type":"journal_article","oa_version":"None","publication_identifier":{"eissn":["2731-6076"]},"acknowledgement":"This work was supported by the Horizon 2021 (grant 101057429) and UK Research and Innovation (grants 10038599 and 10041392)-funded project environMENTAL. Other funding included the Medical Research Council and Medical Research Foundation (MR/R00465X/, MRF-058-0004-RG-DESRI, ‘ESTRA’- Neurobiological underpinning of eating disorders: integrative biopsychosocial longitudinal analyses in adolescents; and MR/S020306/1, MRF-058-0009-RG-DESR-C0759 ‘ESTRA’-Establishing causal relationships between biopsychosocial predictors and correlates of eating disorders and their mediation by neural pathways), the EU-funded FP6 Integrated Project IMAGEN (reinforcement-related behavior in normal brain function and psychopathology; LSHM-CT- 2007-037286), the Horizon 2020-funded European Research Council advanced grant for STRATIFY (brain network-based stratification of reinforcement-related disorders; 695313) and the National Institute for Health Research (NIHR) Biomedical Research Centre at South London and Maudsley NHS Foundation Trust and King’s College London. This paper represents independent research, partly funded by the NIHR Maudsley Biomedical Research Centre at South London and Maudsley NHS Foundation Trust and King’s College London. The views expressed are those of the authors and not necessarily those of the NIHR or the Department of Health and Social Care. The authors thank C. Schmäl for proofreading the manuscript.","page":"1131-1133","title":"Multi-omics analyses of the environMENTAL project provide insights into mental health and disease","day":"01"},{"publication_identifier":{"eissn":["2731-6076"]},"acknowledgement":"Funded provided by the European Union. Complementary funding was received by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee (10131373and 10038599) and Ministry of Science and Technology of China (MOST) National Key Project of ‘Inter-governmental International Scientific and Technological Innovation Cooperation’ (2023YFE0199700).","title":"Rethinking ethics in interdisciplinary and big data-driven neuroscience projects","day":"01","oa_version":"None","date_created":"2025-08-10T22:01:30Z","language":[{"iso":"eng"}],"type":"journal_article","department":[{"_id":"GaNo"}],"doi":"10.1038/s44220-024-00320-3","issue":"10","article_number":"1128-1130","status":"public","publisher":"Springer Nature","scopus_import":"1","citation":{"ista":"Stahl B, Ogoh G, Schumann G, Walter H, Stahl B, Young AH, Desrivières S, Clinton N, Thompson P, Schwalber A, Liu J, Calhoun V, Chang X, Xia Y, Gong Y, Jia T, Renner P, Hese S, Giner A, Sanchez M, Alvarez E, Spanlang B, Pearmund C, Athanasiadis AP, Otten L, Pitel S, Petkoski S, Jirsa V, Schmitt K, Wilbertz J, Patraskaki M, Sommer P, Heilmann-Heimbach S, Mathey CM, Miller A, Claus I, Nöthen MM, Hoffmann P, Forstner AJ, Pastor A, Gallego J, Orosa FE, Viapiana GF, Slater M, Marr L, Novarino G, Marquand A, Böttger SJ, Tschorn M, Rapp M, Ask H, Kjelkenes R, Fernandez S, Van Der Meer D, Westlye LT, Andreassen OA, Aden R, Seefried B, Siehl S, Nees F, Neidhart M, Stringaris A, Schwarz E, Holz N, Tost H, Meyer-Lindenberg A, Christmann N, Jansone K, Banaschewski T, Banks J, Schepanski K, Schütz T, Taron UH, Eils R, Roy JC, Lett TA, Kebir H, Polemiti E, Hitchen E, Jentsch M, Serin E, Bernas A, Vaidya N, Twardziok S, Ralser M, Heinz A, Walter H. 2024. Rethinking ethics in interdisciplinary and big data-driven neuroscience projects. Nature Mental Health. 2(10), 1128–1130.","apa":"Stahl, B., Ogoh, G., Schumann, G., Walter, H., Stahl, B., Young, A. H., … Walter, H. (2024). Rethinking ethics in interdisciplinary and big data-driven neuroscience projects. Nature Mental Health. Springer Nature. https://doi.org/10.1038/s44220-024-00320-3","chicago":"Stahl, Bernd, George Ogoh, Gunter Schumann, Henrik Walter, Bernd Stahl, Allan H. Young, Sylvane Desrivières, et al. “Rethinking Ethics in Interdisciplinary and Big Data-Driven Neuroscience Projects.” Nature Mental Health. Springer Nature, 2024. https://doi.org/10.1038/s44220-024-00320-3.","ama":"Stahl B, Ogoh G, Schumann G, et al. Rethinking ethics in interdisciplinary and big data-driven neuroscience projects. Nature Mental Health. 2024;2(10). doi:10.1038/s44220-024-00320-3","short":"B. Stahl, G. Ogoh, G. Schumann, H. Walter, B. Stahl, A.H. Young, S. Desrivières, N. Clinton, P. Thompson, A. Schwalber, J. Liu, V. Calhoun, X. Chang, Y. Xia, Y. Gong, T. Jia, P. Renner, S. Hese, A. Giner, M. Sanchez, E. Alvarez, B. Spanlang, C. Pearmund, A.P. Athanasiadis, L. Otten, S. Pitel, S. Petkoski, V. Jirsa, K. Schmitt, J. Wilbertz, M. Patraskaki, P. Sommer, S. Heilmann-Heimbach, C.M. Mathey, A. Miller, I. Claus, M.M. Nöthen, P. Hoffmann, A.J. Forstner, A. Pastor, J. Gallego, F.E. Orosa, G.F. Viapiana, M. Slater, L. Marr, G. Novarino, A. Marquand, S.J. Böttger, M. Tschorn, M. Rapp, H. Ask, R. Kjelkenes, S. Fernandez, D. Van Der Meer, L.T. Westlye, O.A. Andreassen, R. Aden, B. Seefried, S. Siehl, F. Nees, M. Neidhart, A. Stringaris, E. Schwarz, N. Holz, H. Tost, A. Meyer-Lindenberg, N. Christmann, K. Jansone, T. Banaschewski, J. Banks, K. Schepanski, T. Schütz, U.H. Taron, R. Eils, J.C. Roy, T.A. Lett, H. Kebir, E. Polemiti, E. Hitchen, M. Jentsch, E. Serin, A. Bernas, N. Vaidya, S. Twardziok, M. Ralser, A. Heinz, H. Walter, Nature Mental Health 2 (2024).","ieee":"B. Stahl et al., “Rethinking ethics in interdisciplinary and big data-driven neuroscience projects,” Nature Mental Health, vol. 2, no. 10. Springer Nature, 2024.","mla":"Stahl, Bernd, et al. “Rethinking Ethics in Interdisciplinary and Big Data-Driven Neuroscience Projects.” Nature Mental Health, vol. 2, no. 10, 1128–1130, Springer Nature, 2024, doi:10.1038/s44220-024-00320-3."},"intvolume":" 2","month":"10","_id":"20157","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2024","article_type":"comment","author":[{"first_name":"Bernd","last_name":"Stahl","full_name":"Stahl, Bernd"},{"first_name":"George","full_name":"Ogoh, George","last_name":"Ogoh"},{"first_name":"Gunter","full_name":"Schumann, Gunter","last_name":"Schumann"},{"last_name":"Walter","full_name":"Walter, Henrik","first_name":"Henrik"},{"first_name":"Bernd","last_name":"Stahl","full_name":"Stahl, Bernd"},{"full_name":"Young, Allan H.","last_name":"Young","first_name":"Allan H."},{"full_name":"Desrivières, Sylvane","last_name":"Desrivières","first_name":"Sylvane"},{"first_name":"Nicholas","full_name":"Clinton, Nicholas","last_name":"Clinton"},{"first_name":"Paul","full_name":"Thompson, Paul","last_name":"Thompson"},{"last_name":"Schwalber","full_name":"Schwalber, Ameli","first_name":"Ameli"},{"last_name":"Liu","full_name":"Liu, Jingyu","first_name":"Jingyu"},{"full_name":"Calhoun, Vince","last_name":"Calhoun","first_name":"Vince"},{"last_name":"Chang","full_name":"Chang, Xiao","first_name":"Xiao"},{"full_name":"Xia, Yunman","last_name":"Xia","first_name":"Yunman"},{"first_name":"Yanting","last_name":"Gong","full_name":"Gong, Yanting"},{"first_name":"Tianye","full_name":"Jia, Tianye","last_name":"Jia"},{"first_name":"Paul","last_name":"Renner","full_name":"Renner, Paul"},{"first_name":"Sören","full_name":"Hese, Sören","last_name":"Hese"},{"full_name":"Giner, Arantxa","last_name":"Giner","first_name":"Arantxa"},{"first_name":"Mavi","full_name":"Sanchez, Mavi","last_name":"Sanchez"},{"first_name":"Elena","full_name":"Alvarez, 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Stefanie"},{"first_name":"Carina M.","full_name":"Mathey, Carina M.","last_name":"Mathey"},{"full_name":"Miller, Abigail","last_name":"Miller","first_name":"Abigail"},{"full_name":"Claus, Isabelle","last_name":"Claus","first_name":"Isabelle"},{"first_name":"Markus M.","last_name":"Nöthen","full_name":"Nöthen, Markus M."},{"first_name":"Per","last_name":"Hoffmann","full_name":"Hoffmann, Per"},{"first_name":"Andreas J.","last_name":"Forstner","full_name":"Forstner, Andreas J."},{"first_name":"Alvaro","last_name":"Pastor","full_name":"Pastor, Alvaro"},{"first_name":"Jaime","last_name":"Gallego","full_name":"Gallego, Jaime"},{"full_name":"Orosa, Francisco Eiroa","last_name":"Orosa","first_name":"Francisco Eiroa"},{"full_name":"Viapiana, Guillem Feixas","last_name":"Viapiana","first_name":"Guillem Feixas"},{"first_name":"Mel","last_name":"Slater","full_name":"Slater, Mel"},{"full_name":"Marr, Lena","last_name":"Marr","first_name":"Lena","id":"4406F586-F248-11E8-B48F-1D18A9856A87"},{"orcid":"0000-0002-7673-7178","id":"3E57A680-F248-11E8-B48F-1D18A9856A87","first_name":"Gaia","full_name":"Novarino, Gaia","last_name":"Novarino"},{"first_name":"Andre","full_name":"Marquand, Andre","last_name":"Marquand"},{"first_name":"Sarah Jane","last_name":"Böttger","full_name":"Böttger, Sarah Jane"},{"first_name":"Mira","full_name":"Tschorn, Mira","last_name":"Tschorn"},{"last_name":"Rapp","full_name":"Rapp, Michael","first_name":"Michael"},{"last_name":"Ask","full_name":"Ask, Helga","first_name":"Helga"},{"first_name":"Rikka","full_name":"Kjelkenes, Rikka","last_name":"Kjelkenes"},{"first_name":"Sara","last_name":"Fernandez","full_name":"Fernandez, Sara"},{"first_name":"Dennis","last_name":"Van Der Meer","full_name":"Van Der Meer, Dennis"},{"full_name":"Westlye, Lars T.","last_name":"Westlye","first_name":"Lars T."},{"first_name":"Ole A.","last_name":"Andreassen","full_name":"Andreassen, Ole A."},{"first_name":"Rieke","last_name":"Aden","full_name":"Aden, Rieke"},{"first_name":"Beke","full_name":"Seefried, Beke","last_name":"Seefried"},{"full_name":"Siehl, Sebastian","last_name":"Siehl","first_name":"Sebastian"},{"full_name":"Nees, Frauke","last_name":"Nees","first_name":"Frauke"},{"first_name":"Maja","last_name":"Neidhart","full_name":"Neidhart, Maja"},{"first_name":"Argyris","last_name":"Stringaris","full_name":"Stringaris, Argyris"},{"full_name":"Schwarz, Emanuel","last_name":"Schwarz","first_name":"Emanuel"},{"first_name":"Nathalie","last_name":"Holz","full_name":"Holz, Nathalie"},{"last_name":"Tost","full_name":"Tost, Heike","first_name":"Heike"},{"first_name":"Andreas","full_name":"Meyer-Lindenberg, Andreas","last_name":"Meyer-Lindenberg"},{"last_name":"Christmann","full_name":"Christmann, Nina","first_name":"Nina"},{"first_name":"Karina","last_name":"Jansone","full_name":"Jansone, Karina"},{"first_name":"Tobias","last_name":"Banaschewski","full_name":"Banaschewski, Tobias"},{"full_name":"Banks, Jamie","last_name":"Banks","first_name":"Jamie"},{"first_name":"Kerstin","full_name":"Schepanski, Kerstin","last_name":"Schepanski"},{"last_name":"Schütz","full_name":"Schütz, Tatjana","first_name":"Tatjana"},{"first_name":"Ulrike Helene","full_name":"Taron, Ulrike Helene","last_name":"Taron"},{"last_name":"Eils","full_name":"Eils, Roland","first_name":"Roland"},{"first_name":"Jean Charles","last_name":"Roy","full_name":"Roy, Jean Charles"},{"first_name":"Tristram A.","full_name":"Lett, Tristram A.","last_name":"Lett"},{"full_name":"Kebir, Hedi","last_name":"Kebir","first_name":"Hedi"},{"first_name":"Elli","full_name":"Polemiti, Elli","last_name":"Polemiti"},{"full_name":"Hitchen, Esther","last_name":"Hitchen","first_name":"Esther"},{"last_name":"Jentsch","full_name":"Jentsch, Marcel","first_name":"Marcel"},{"first_name":"Emin","full_name":"Serin, Emin","last_name":"Serin"},{"last_name":"Bernas","full_name":"Bernas, Antoine","first_name":"Antoine"},{"full_name":"Vaidya, Nilakshi","last_name":"Vaidya","first_name":"Nilakshi"},{"first_name":"Sven","last_name":"Twardziok","full_name":"Twardziok, Sven"},{"first_name":"Markus","last_name":"Ralser","full_name":"Ralser, Markus"},{"first_name":"Andreas","last_name":"Heinz","full_name":"Heinz, Andreas"},{"full_name":"Walter, Henrik","last_name":"Walter","first_name":"Henrik"}],"publication":"Nature Mental Health","quality_controlled":"1","abstract":[{"lang":"eng","text":"The focus of much of contemporary research ethics is on compliance with established protocols. However, large data-driven neuroscience research raises new ethical concerns that have no agreed-upon solution. Here we reflect on these challenges and propose better integration of public and patient involvement in this evolving landscape."}],"publication_status":"published","OA_type":"closed access","date_updated":"2025-08-11T06:53:55Z","date_published":"2024-10-01T00:00:00Z","fulldoi":"https://doi.org/10.1038/s44220-024-00320-3","volume":2,"article_processing_charge":"No"},{"fulldoi":"https://doi.org/10.1038/s41557-024-01631-9","volume":16,"article_processing_charge":"No","_id":"20527","external_id":{"pmid":["39313629"]},"year":"2024","extern":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_type":"letter_note","author":[{"orcid":"0000-0002-6957-6089","id":"9ebb78a5-cc0d-11ee-8322-fae086a32caf","first_name":"Latha","last_name":"Venkataraman","full_name":"Venkataraman, Latha"},{"first_name":"Jan","last_name":"van Ruitenbeek","full_name":"van Ruitenbeek, Jan"}],"abstract":[{"lang":"eng","text":"Arising from C. Yang et al. Nature Chemistry https://doi.org/10.1038/s41557-023-01212-2 (2023)\r\n\r\nIn this work Yang et al.1 claim that an enantioselective Michael addition reaction with a barrier of 16 kcal mol−1 occurs at the single-molecule level in frozen solvent by measuring fluctuations in current flowing across graphene-based molecular devices. The article, however, contains major scientific errors that undermine their conclusions. We highlight issues with the fabrication of the devices, a lack of characterization, discrepancies between theory and experiment, unreliable inelastic electron tunnelling spectra (IETS) and a perceived misinterpretation of noise as evidence of reaction."}],"quality_controlled":"1","publication":"Nature Chemistry","pmid":1,"publication_status":"published","date_published":"2024-11-01T00:00:00Z","date_updated":"2025-10-23T12:58:52Z","OA_type":"closed access","issue":"11","status":"public","publisher":"Springer Nature","citation":{"chicago":"Venkataraman, Latha, and Jan van Ruitenbeek. “Questioning Claims of Monitoring the Michael Addition Reaction at the Single-Molecule Level.” Nature Chemistry. Springer Nature, 2024. https://doi.org/10.1038/s41557-024-01631-9.","apa":"Venkataraman, L., & van Ruitenbeek, J. (2024). Questioning claims of monitoring the Michael addition reaction at the single-molecule level. Nature Chemistry. Springer Nature. https://doi.org/10.1038/s41557-024-01631-9","ama":"Venkataraman L, van Ruitenbeek J. Questioning claims of monitoring the Michael addition reaction at the single-molecule level. Nature Chemistry. 2024;16(11):1767-1769. doi:10.1038/s41557-024-01631-9","ista":"Venkataraman L, van Ruitenbeek J. 2024. Questioning claims of monitoring the Michael addition reaction at the single-molecule level. Nature Chemistry. 16(11), 1767–1769.","mla":"Venkataraman, Latha, and Jan van Ruitenbeek. “Questioning Claims of Monitoring the Michael Addition Reaction at the Single-Molecule Level.” Nature Chemistry, vol. 16, no. 11, Springer Nature, 2024, pp. 1767–69, doi:10.1038/s41557-024-01631-9.","short":"L. Venkataraman, J. van Ruitenbeek, Nature Chemistry 16 (2024) 1767–1769.","ieee":"L. Venkataraman and J. van Ruitenbeek, “Questioning claims of monitoring the Michael addition reaction at the single-molecule level,” Nature Chemistry, vol. 16, no. 11. Springer Nature, pp. 1767–1769, 2024."},"scopus_import":"1","intvolume":" 16","month":"11","publication_identifier":{"eissn":["1755-4349"],"issn":["1755-4330"]},"day":"01","page":"1767-1769","title":"Questioning claims of monitoring the Michael addition reaction at the single-molecule level","oa_version":"None","date_created":"2025-10-23T12:16:57Z","type":"journal_article","language":[{"iso":"eng"}],"doi":"10.1038/s41557-024-01631-9"},{"doi":"10.1021/jacs.4c09782","type":"journal_article","language":[{"iso":"eng"}],"date_created":"2025-10-23T12:20:19Z","oa_version":"None","day":"04","title":"Plasmon-exciton strong coupling in single-molecule junction electroluminescence","page":"34394-34400","publication_identifier":{"issn":["0002-7863"],"eissn":["1520-5126"]},"month":"12","intvolume":" 146","citation":{"mla":"Paoletta, Angela L., et al. “Plasmon-Exciton Strong Coupling in Single-Molecule Junction Electroluminescence.” Journal of the American Chemical Society, vol. 146, no. 50, American Chemical Society, 2024, pp. 34394–400, doi:10.1021/jacs.4c09782.","short":"A.L. Paoletta, N.M. Hoffmann, D.W. Cheng, E. York, D. Xu, B. Zhang, M. Delor, T.C. Berkelbach, L. Venkataraman, Journal of the American Chemical Society 146 (2024) 34394–34400.","ieee":"A. L. Paoletta et al., “Plasmon-exciton strong coupling in single-molecule junction electroluminescence,” Journal of the American Chemical Society, vol. 146, no. 50. American Chemical Society, pp. 34394–34400, 2024.","chicago":"Paoletta, Angela L., Norah M. Hoffmann, Daniel W. Cheng, Emma York, Ding Xu, Boyuan Zhang, Milan Delor, Timothy C. Berkelbach, and Latha Venkataraman. “Plasmon-Exciton Strong Coupling in Single-Molecule Junction Electroluminescence.” Journal of the American Chemical Society. American Chemical Society, 2024. https://doi.org/10.1021/jacs.4c09782.","apa":"Paoletta, A. L., Hoffmann, N. M., Cheng, D. W., York, E., Xu, D., Zhang, B., … Venkataraman, L. (2024). Plasmon-exciton strong coupling in single-molecule junction electroluminescence. Journal of the American Chemical Society. American Chemical Society. https://doi.org/10.1021/jacs.4c09782","ama":"Paoletta AL, Hoffmann NM, Cheng DW, et al. Plasmon-exciton strong coupling in single-molecule junction electroluminescence. Journal of the American Chemical Society. 2024;146(50):34394-34400. doi:10.1021/jacs.4c09782","ista":"Paoletta AL, Hoffmann NM, Cheng DW, York E, Xu D, Zhang B, Delor M, Berkelbach TC, Venkataraman L. 2024. Plasmon-exciton strong coupling in single-molecule junction electroluminescence. Journal of the American Chemical Society. 146(50), 34394–34400."},"scopus_import":"1","publisher":"American Chemical Society","status":"public","issue":"50","date_published":"2024-12-04T00:00:00Z","OA_type":"closed access","date_updated":"2025-10-23T13:03:41Z","pmid":1,"publication_status":"published","abstract":[{"text":"Single molecules bridging two metallic electrodes can emit light through electroluminescence when subjected to a bias voltage. Typically, light emission in such devices results from transitions between molecular states, although in the presence of light-matter coupling, the emission can result from a transition between hybrid light-matter states. Here, we create single metal-molecule-metal junctions and simultaneously collect conductance and electroluminescence data using a scanning tunneling microscope (STM) equipped with a custom spectrometer. Through experimental analysis and electronic structure calculations, we provide evidence for a molecule-electrode interfacial exciton coupled to a junction cavity plasmon. Importantly, we find that close to resonant transport conditions, the molecular junction functions as a single emitter that is strongly coupled to the junction cavity mode, leading to characteristic Rabi splitting of the emission spectrum and providing the first example of an electroluminescence-driven single-molecule system in the regime of strong light-matter coupling.","lang":"eng"}],"publication":"Journal of the American Chemical Society","quality_controlled":"1","article_type":"original","author":[{"first_name":"Angela L.","last_name":"Paoletta","full_name":"Paoletta, Angela L."},{"first_name":"Norah M.","last_name":"Hoffmann","full_name":"Hoffmann, Norah M."},{"full_name":"Cheng, Daniel W.","last_name":"Cheng","first_name":"Daniel W."},{"last_name":"York","full_name":"York, Emma","first_name":"Emma"},{"first_name":"Ding","last_name":"Xu","full_name":"Xu, Ding"},{"last_name":"Zhang","full_name":"Zhang, Boyuan","first_name":"Boyuan"},{"first_name":"Milan","full_name":"Delor, Milan","last_name":"Delor"},{"last_name":"Berkelbach","full_name":"Berkelbach, Timothy C.","first_name":"Timothy C."},{"first_name":"Latha","last_name":"Venkataraman","full_name":"Venkataraman, Latha","orcid":"0000-0002-6957-6089","id":"9ebb78a5-cc0d-11ee-8322-fae086a32caf"}],"year":"2024","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","extern":"1","_id":"20529","external_id":{"pmid":["39630979"]},"article_processing_charge":"No","fulldoi":"https://doi.org/10.1021/jacs.4c09782","volume":146},{"publisher":"World Scientific Publishing","status":"public","article_processing_charge":"No","month":"01","fulldoi":"https://doi.org/10.1142/13476","scopus_import":"1","citation":{"ieee":"X. Chen and A. Zinger, Spin/Pin-structures and real enumerative geometry. World Scientific Publishing, 2024.","short":"X. Chen, A. Zinger, Spin/Pin-Structures and Real Enumerative Geometry, World Scientific Publishing, 2024.","mla":"Chen, Xujia, and Aleksey Zinger. Spin/Pin-Structures and Real Enumerative Geometry. World Scientific Publishing, 2024, doi:10.1142/13476.","ista":"Chen X, Zinger A. 2024. Spin/Pin-structures and real enumerative geometry, World Scientific Publishing,p.","apa":"Chen, X., & Zinger, A. (2024). Spin/Pin-structures and real enumerative geometry. World Scientific Publishing. https://doi.org/10.1142/13476","chicago":"Chen, Xujia, and Aleksey Zinger. Spin/Pin-Structures and Real Enumerative Geometry. World Scientific Publishing, 2024. https://doi.org/10.1142/13476.","ama":"Chen X, Zinger A. Spin/Pin-Structures and Real Enumerative Geometry. World Scientific Publishing; 2024. doi:10.1142/13476"},"quality_controlled":"1","abstract":[{"lang":"eng","text":"Spin/Pin-structures on vector bundles have long featured prominently in differential geometry, in particular providing part of the foundation for the original proof of the renowned Atiyah–Singer Index Theory. More recently, they have underpinned the symplectic topology foundations of the so-called real sector of the mirror symmetry of string theory.\r\n\r\nThis semi-expository three-part monograph provides an accessible introduction to Spin- and Pin-structures in general, demonstrates their role in the orientability considerations in symplectic topology, and presents their applications in enumerative geometry.\r\n\r\nPart I contains a systematic treatment of Spin/Pin-structures from different topological perspectives and may be suitable for an advanced undergraduate reading seminar. This leads to Part II, which systematically studies orientability problems for the determinants of real Cauchy–Riemann operators on vector bundles. Part III introduces enumerative geometry of curves in complex projective varieties and in symplectic manifolds, demonstrating some applications of the first two parts in the process. Two appendices review the Čech cohomology perspective on fiber bundles and Lie group covering spaces."}],"oa_version":"None","author":[{"id":"968ad14a-fd86-11ee-a420-ea29715511a3","last_name":"Chen","full_name":"Chen, Xujia","first_name":"Xujia"},{"first_name":"Aleksey","full_name":"Zinger, Aleksey","last_name":"Zinger"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","extern":"1","title":"Spin/Pin-structures and real enumerative geometry","day":"01","year":"2024","publication_identifier":{"isbn":["9789811278532"],"eisbn":["9789811278556"]},"_id":"20615","doi":"10.1142/13476","date_updated":"2025-11-10T15:28:49Z","OA_type":"closed access","date_published":"2024-01-01T00:00:00Z","language":[{"iso":"eng"}],"publication_status":"published","type":"book","date_created":"2025-11-10T08:40:10Z"},{"OA_place":"repository","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","extern":"1","year":"2024","external_id":{"pmid":["39369557"]},"_id":"20756","publication":"Current Opinion in Chemical Biology","quality_controlled":"1","abstract":[{"text":"Biocatalysis has the potential to address the need for more sustainable organic synthesis routes. Protein engineering can tune enzymes to perform in cascade reactions and for efficient synthesis of enantiomerically enriched compounds, using both natural and new-to-nature reaction pathways. This review highlights recent achievements in biocatalysis, especially the development of novel enzymatic syntheses to access versatile small molecule intermediates and complex biomolecules. Biocatalytic strategies for the degradation of persistent pollutants and approaches for biomass valorization are also discussed. The transition of chemical synthesis to a greener future will be accelerated by implementing enzymes and engineering them for high performance and new activities.","lang":"eng"}],"author":[{"full_name":"Reisenbauer, Julia","last_name":"Reisenbauer","first_name":"Julia","id":"51d862e9-36ee-11f0-86d3-8534c85a5496"},{"last_name":"Sicinski","full_name":"Sicinski, Kathleen M.","first_name":"Kathleen M."},{"first_name":"Frances H.","full_name":"Arnold, Frances H.","last_name":"Arnold"}],"article_type":"original","publication_status":"published","pmid":1,"OA_type":"green","date_updated":"2025-12-16T13:03:48Z","date_published":"2024-12-01T00:00:00Z","volume":83,"fulldoi":"https://doi.org/10.1016/j.cbpa.2024.102536","article_processing_charge":"No","oa":1,"main_file_link":[{"url":"https://europepmc.org/article/med/39369557#free-full-text","open_access":"1"}],"title":"Catalyzing the future: Recent advances in chemical synthesis using enzymes","day":"01","publication_identifier":{"issn":["1367-5931"],"eissn":["1879-0402"]},"oa_version":"Submitted Version","language":[{"iso":"eng"}],"type":"journal_article","date_created":"2025-12-09T14:22:40Z","doi":"10.1016/j.cbpa.2024.102536","article_number":"102536","status":"public","publisher":"Elsevier","intvolume":" 83","scopus_import":"1","citation":{"ista":"Reisenbauer J, Sicinski KM, Arnold FH. 2024. Catalyzing the future: Recent advances in chemical synthesis using enzymes. Current Opinion in Chemical Biology. 83, 102536.","apa":"Reisenbauer, J., Sicinski, K. M., & Arnold, F. H. (2024). Catalyzing the future: Recent advances in chemical synthesis using enzymes. Current Opinion in Chemical Biology. Elsevier. https://doi.org/10.1016/j.cbpa.2024.102536","chicago":"Reisenbauer, Julia, Kathleen M. Sicinski, and Frances H. Arnold. “Catalyzing the Future: Recent Advances in Chemical Synthesis Using Enzymes.” Current Opinion in Chemical Biology. Elsevier, 2024. https://doi.org/10.1016/j.cbpa.2024.102536.","ama":"Reisenbauer J, Sicinski KM, Arnold FH. Catalyzing the future: Recent advances in chemical synthesis using enzymes. Current Opinion in Chemical Biology. 2024;83. doi:10.1016/j.cbpa.2024.102536","short":"J. Reisenbauer, K.M. Sicinski, F.H. Arnold, Current Opinion in Chemical Biology 83 (2024).","ieee":"J. Reisenbauer, K. M. Sicinski, and F. H. Arnold, “Catalyzing the future: Recent advances in chemical synthesis using enzymes,” Current Opinion in Chemical Biology, vol. 83. Elsevier, 2024.","mla":"Reisenbauer, Julia, et al. “Catalyzing the Future: Recent Advances in Chemical Synthesis Using Enzymes.” Current Opinion in Chemical Biology, vol. 83, 102536, Elsevier, 2024, doi:10.1016/j.cbpa.2024.102536."},"month":"12"},{"month":"08","intvolume":" 60","citation":{"ieee":"B. B. Botlik, P. Finkelstein, A.-S. K. Paschke, J. Reisenbauer, and B. Morandi, “Versatile dehydrogenation of carbonyls enabled by an iodine(III) reagent,” Chemical Communications, vol. 60, no. 69. Royal Society of Chemistry, pp. 9254–9257, 2024.","short":"B.B. Botlik, P. Finkelstein, A.-S.K. Paschke, J. Reisenbauer, B. Morandi, Chemical Communications 60 (2024) 9254–9257.","mla":"Botlik, Bence B., et al. “Versatile Dehydrogenation of Carbonyls Enabled by an Iodine(III) Reagent.” Chemical Communications, vol. 60, no. 69, Royal Society of Chemistry, 2024, pp. 9254–57, doi:10.1039/d4cc02609h.","ista":"Botlik BB, Finkelstein P, Paschke A-SK, Reisenbauer J, Morandi B. 2024. Versatile dehydrogenation of carbonyls enabled by an iodine(III) reagent. Chemical Communications. 60(69), 9254–9257.","ama":"Botlik BB, Finkelstein P, Paschke A-SK, Reisenbauer J, Morandi B. Versatile dehydrogenation of carbonyls enabled by an iodine(III) reagent. Chemical Communications. 2024;60(69):9254-9257. doi:10.1039/d4cc02609h","chicago":"Botlik, Bence B., Patrick Finkelstein, Ann-Sophie K. Paschke, Julia Reisenbauer, and Bill Morandi. “Versatile Dehydrogenation of Carbonyls Enabled by an Iodine(III) Reagent.” Chemical Communications. Royal Society of Chemistry, 2024. https://doi.org/10.1039/d4cc02609h.","apa":"Botlik, B. B., Finkelstein, P., Paschke, A.-S. K., Reisenbauer, J., & Morandi, B. (2024). Versatile dehydrogenation of carbonyls enabled by an iodine(III) reagent. Chemical Communications. Royal Society of Chemistry. https://doi.org/10.1039/d4cc02609h"},"scopus_import":"1","publisher":"Royal Society of Chemistry","status":"public","issue":"69","doi":"10.1039/d4cc02609h","license":"https://creativecommons.org/licenses/by-nc/3.0/","type":"journal_article","has_accepted_license":"1","language":[{"iso":"eng"}],"date_created":"2025-12-09T14:23:00Z","oa_version":"Published Version","day":"02","title":"Versatile dehydrogenation of carbonyls enabled by an iodine(III) reagent","page":"9254-9257","publication_identifier":{"eissn":["1364-548X"],"issn":["1359-7345"]},"oa":1,"article_processing_charge":"No","main_file_link":[{"url":"https://doi.org/10.1039/D4CC02609H","open_access":"1"}],"fulldoi":"https://doi.org/10.1039/d4cc02609h","volume":60,"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc/3.0/legalcode","short":"CC BY-NC (3.0)","image":"/images/cc_by_nc.png","name":"Creative Commons Attribution-NonCommercial 3.0 Unported (CC BY-NC 3.0)"},"date_published":"2024-08-02T00:00:00Z","date_updated":"2025-12-16T11:19:43Z","OA_type":"hybrid","pmid":1,"publication_status":"published","abstract":[{"lang":"eng","text":"We report the utilisation of an iodine(III) reagent to access α,β-unsaturated carbonyls from the corresponding silyl enol ethers and enol phosphates. The transformation can also be carried out in one pot, directly dehydrogenating carbonyls."}],"publication":"Chemical Communications","quality_controlled":"1","article_type":"original","author":[{"last_name":"Botlik","full_name":"Botlik, Bence B.","first_name":"Bence B."},{"first_name":"Patrick","last_name":"Finkelstein","full_name":"Finkelstein, Patrick"},{"first_name":"Ann-Sophie K.","last_name":"Paschke","full_name":"Paschke, Ann-Sophie K."},{"id":"51d862e9-36ee-11f0-86d3-8534c85a5496","last_name":"Reisenbauer","full_name":"Reisenbauer, Julia","first_name":"Julia"},{"first_name":"Bill","full_name":"Morandi, Bill","last_name":"Morandi"}],"year":"2024","extern":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","OA_place":"publisher","_id":"20757","external_id":{"pmid":["39118590"]}},{"date_updated":"2025-12-15T10:21:56Z","OA_type":"hybrid","date_published":"2024-01-12T00:00:00Z","publication_status":"published","pmid":1,"article_type":"original","author":[{"last_name":"Panska","full_name":"Panska, Lucie","first_name":"Lucie"},{"first_name":"Stepanka","full_name":"Nedvedova, Stepanka","last_name":"Nedvedova"},{"first_name":"Vojtech","full_name":"Vacek, Vojtech","last_name":"Vacek"},{"first_name":"Daniela","full_name":"Krivska, Daniela","last_name":"Krivska"},{"full_name":"Konecny, Lukas","last_name":"Konecny","first_name":"Lukas"},{"id":"25f3131f-6e7c-11ef-8296-b64ccd4a1b69","orcid":"0000-0002-3845-3465","full_name":"Knop, Filip","last_name":"Knop","first_name":"Filip"},{"full_name":"Kutil, Zsofia","last_name":"Kutil","first_name":"Zsofia"},{"full_name":"Skultetyova, Lubica","last_name":"Skultetyova","first_name":"Lubica"},{"first_name":"Adrian","full_name":"Leontovyc, Adrian","last_name":"Leontovyc"},{"last_name":"Ulrychova","full_name":"Ulrychova, Lenka","first_name":"Lenka"},{"first_name":"Judy","full_name":"Sakanari, Judy","last_name":"Sakanari"},{"first_name":"Masako","last_name":"Asahina","full_name":"Asahina, Masako"},{"full_name":"Barinka, Cyril","last_name":"Barinka","first_name":"Cyril"},{"last_name":"Macurkova","full_name":"Macurkova, Marie","first_name":"Marie"},{"full_name":"Dvorak, Jan","last_name":"Dvorak","first_name":"Jan"}],"quality_controlled":"1","publication":"Bioscience Reports","abstract":[{"text":"Human glutamate carboxypeptidase 2 (GCP2) from the M28B metalloprotease group is an important target for therapy in neurological disorders and an established tumor marker. However, its physiological functions remain unclear. To better understand general roles, we used the model organism Caenorhabditis elegans to genetically manipulate its three existing orthologous genes and evaluate the impact on worm physiology. The results of gene knockout studies showed that C. elegans GCP2 orthologs affect the pharyngeal physiology, reproduction, and structural integrity of the organism. Promoter-driven GFP expression revealed distinct localization for each of the three gene paralogs, with gcp-2.1 being most abundant in muscles, intestine, and pharyngeal interneurons, gcp-2.2 restricted to the phasmid neurons, and gcp-2.3 located in the excretory cell. The present study provides new insight into the unique phenotypic effects of GCP2 gene knockouts in C. elegans, and the specific tissue localizations. We believe that elucidation of particular roles in a non-mammalian organism can help to explain important questions linked to physiology of this protease group and in extension to human GCP2 involvement in pathophysiological processes.","lang":"eng"}],"external_id":{"pmid":["38108122 "]},"_id":"20807","OA_place":"publisher","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","extern":"1","year":"2024","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1042/BSR20230502"}],"article_processing_charge":"Yes (in subscription journal)","oa":1,"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"volume":44,"fulldoi":"https://doi.org/10.1042/bsr20230502","doi":"10.1042/bsr20230502","date_created":"2025-12-12T09:03:54Z","language":[{"iso":"eng"}],"has_accepted_license":"1","type":"journal_article","oa_version":"Published Version","publication_identifier":{"eissn":["1573-4935"],"issn":["0144-8463"]},"title":"Uncovering the essential roles of glutamate carboxypeptidase 2 orthologs in Caenorhabditis elegans","day":"12","month":"01","scopus_import":"1","citation":{"ista":"Panska L, Nedvedova S, Vacek V, Krivska D, Konecny L, Knop F, Kutil Z, Skultetyova L, Leontovyc A, Ulrychova L, Sakanari J, Asahina M, Barinka C, Macurkova M, Dvorak J. 2024. Uncovering the essential roles of glutamate carboxypeptidase 2 orthologs in Caenorhabditis elegans. Bioscience Reports. 44(1), BSR20230502.","chicago":"Panska, Lucie, Stepanka Nedvedova, Vojtech Vacek, Daniela Krivska, Lukas Konecny, Filip Knop, Zsofia Kutil, et al. “Uncovering the Essential Roles of Glutamate Carboxypeptidase 2 Orthologs in Caenorhabditis Elegans.” Bioscience Reports. Portland Press, 2024. https://doi.org/10.1042/bsr20230502.","apa":"Panska, L., Nedvedova, S., Vacek, V., Krivska, D., Konecny, L., Knop, F., … Dvorak, J. (2024). Uncovering the essential roles of glutamate carboxypeptidase 2 orthologs in Caenorhabditis elegans. Bioscience Reports. Portland Press. https://doi.org/10.1042/bsr20230502","ama":"Panska L, Nedvedova S, Vacek V, et al. Uncovering the essential roles of glutamate carboxypeptidase 2 orthologs in Caenorhabditis elegans. Bioscience Reports. 2024;44(1). doi:10.1042/bsr20230502","short":"L. Panska, S. Nedvedova, V. Vacek, D. Krivska, L. Konecny, F. Knop, Z. Kutil, L. Skultetyova, A. Leontovyc, L. Ulrychova, J. Sakanari, M. Asahina, C. Barinka, M. Macurkova, J. Dvorak, Bioscience Reports 44 (2024).","ieee":"L. Panska et al., “Uncovering the essential roles of glutamate carboxypeptidase 2 orthologs in Caenorhabditis elegans,” Bioscience Reports, vol. 44, no. 1. Portland Press, 2024.","mla":"Panska, Lucie, et al. “Uncovering the Essential Roles of Glutamate Carboxypeptidase 2 Orthologs in Caenorhabditis Elegans.” Bioscience Reports, vol. 44, no. 1, BSR20230502, Portland Press, 2024, doi:10.1042/bsr20230502."},"intvolume":" 44","publisher":"Portland Press","ddc":["570"],"issue":"1","article_number":"BSR20230502","status":"public"},{"OA_type":"gold","date_updated":"2025-12-15T10:26:56Z","date_published":"2024-07-19T00:00:00Z","publication_status":"published","pmid":1,"article_type":"original","author":[{"first_name":"Filip","last_name":"Knop","full_name":"Knop, Filip","orcid":"0000-0002-3845-3465","id":"25f3131f-6e7c-11ef-8296-b64ccd4a1b69"},{"first_name":"Apolena","full_name":"Zounarová, Apolena","last_name":"Zounarová"},{"first_name":"Vojtěch","full_name":"Šabata, Vojtěch","last_name":"Šabata"},{"full_name":"Middelkoop, Teije Corneel","last_name":"Middelkoop","first_name":"Teije Corneel"},{"full_name":"Macůrková, Marie","last_name":"Macůrková","first_name":"Marie"}],"quality_controlled":"1","publication":"eLife","abstract":[{"text":"During Caenorhabditis elegans development, multiple cells migrate long distances or extend processes to reach their final position and/or attain proper shape. The Wnt signalling pathway stands out as one of the major coordinators of cell migration or cell outgrowth along the anterior-posterior body axis. The outcome of Wnt signalling is fine-tuned by various mechanisms including endocytosis. In this study, we show that SEL-5, the C. elegans orthologue of mammalian AP2-associated kinase AAK1, acts together with the retromer complex as a positive regulator of EGL-20/Wnt signalling during the migration of QL neuroblast daughter cells. At the same time, SEL-5 in cooperation with the retromer complex is also required during excretory canal cell outgrowth. Importantly, SEL-5 kinase activity is not required for its role in neuronal migration or excretory cell outgrowth, and neither of these processes is dependent on DPY-23/AP2M1 phosphorylation. We further establish that the Wnt proteins CWN-1 and CWN-2, together with the Frizzled receptor CFZ-2, positively regulate excretory cell outgrowth, while LIN-44/Wnt and LIN-17/Frizzled together generate a stop signal inhibiting its extension.","lang":"eng"}],"external_id":{"pmid":["39028260"]},"_id":"20808","DOAJ_listed":"1","extern":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","OA_place":"publisher","year":"2024","main_file_link":[{"open_access":"1","url":"https://doi.org/10.7554/elife.91054"}],"oa":1,"article_processing_charge":"Yes","volume":13,"fulldoi":"https://doi.org/10.7554/elife.91054","doi":"10.7554/elife.91054","date_created":"2025-12-12T09:06:31Z","language":[{"iso":"eng"}],"type":"journal_article","oa_version":"Published Version","publication_identifier":{"eissn":["2050-084X"]},"title":"Caenorhabditis elegans SEL-5/AAK1 regulates cell migration and cell outgrowth independently of its kinase activity","day":"19","month":"07","scopus_import":"1","citation":{"chicago":"Knop, Filip, Apolena Zounarová, Vojtěch Šabata, Teije Corneel Middelkoop, and Marie Macůrková. “Caenorhabditis Elegans SEL-5/AAK1 Regulates Cell Migration and Cell Outgrowth Independently of Its Kinase Activity.” ELife. eLife Sciences Publications, 2024. https://doi.org/10.7554/elife.91054.","ama":"Knop F, Zounarová A, Šabata V, Middelkoop TC, Macůrková M. Caenorhabditis elegans SEL-5/AAK1 regulates cell migration and cell outgrowth independently of its kinase activity. eLife. 2024;13. doi:10.7554/elife.91054","apa":"Knop, F., Zounarová, A., Šabata, V., Middelkoop, T. C., & Macůrková, M. (2024). Caenorhabditis elegans SEL-5/AAK1 regulates cell migration and cell outgrowth independently of its kinase activity. ELife. eLife Sciences Publications. https://doi.org/10.7554/elife.91054","ista":"Knop F, Zounarová A, Šabata V, Middelkoop TC, Macůrková M. 2024. Caenorhabditis elegans SEL-5/AAK1 regulates cell migration and cell outgrowth independently of its kinase activity. eLife. 13, e91054.","mla":"Knop, Filip, et al. “Caenorhabditis Elegans SEL-5/AAK1 Regulates Cell Migration and Cell Outgrowth Independently of Its Kinase Activity.” ELife, vol. 13, e91054, eLife Sciences Publications, 2024, doi:10.7554/elife.91054.","short":"F. Knop, A. Zounarová, V. Šabata, T.C. Middelkoop, M. Macůrková, ELife 13 (2024).","ieee":"F. Knop, A. Zounarová, V. Šabata, T. C. Middelkoop, and M. Macůrková, “Caenorhabditis elegans SEL-5/AAK1 regulates cell migration and cell outgrowth independently of its kinase activity,” eLife, vol. 13. eLife Sciences Publications, 2024."},"intvolume":" 13","publisher":"eLife Sciences Publications","article_number":"e91054","status":"public"},{"issue":"7","ddc":["530"],"status":"public","article_number":"071101","file_date_updated":"2024-07-16T06:30:30Z","publisher":"AIP Publishing","citation":{"ama":"Kohopää K, Ronzani A, Jabdaraghi RN, et al. Effect of ion irradiation on superconducting thin films. APL Materials. 2024;12(7). doi:10.1063/5.0202851","chicago":"Kohopää, Katja, Alberto Ronzani, Robab Najafi Jabdaraghi, Arijit Bera, Mário Ribeiro, Dibyendu Hazra, Jorden L Senior, et al. “Effect of Ion Irradiation on Superconducting Thin Films.” APL Materials. AIP Publishing, 2024. https://doi.org/10.1063/5.0202851.","apa":"Kohopää, K., Ronzani, A., Jabdaraghi, R. N., Bera, A., Ribeiro, M., Hazra, D., … Kemppinen, A. (2024). Effect of ion irradiation on superconducting thin films. APL Materials. AIP Publishing. https://doi.org/10.1063/5.0202851","ista":"Kohopää K, Ronzani A, Jabdaraghi RN, Bera A, Ribeiro M, Hazra D, Senior JL, Prunnila M, Govenius J, Lehtinen JS, Kemppinen A. 2024. Effect of ion irradiation on superconducting thin films. APL Materials. 12(7), 071101.","mla":"Kohopää, Katja, et al. “Effect of Ion Irradiation on Superconducting Thin Films.” APL Materials, vol. 12, no. 7, 071101, AIP Publishing, 2024, doi:10.1063/5.0202851.","ieee":"K. Kohopää et al., “Effect of ion irradiation on superconducting thin films,” APL Materials, vol. 12, no. 7. AIP Publishing, 2024.","short":"K. Kohopää, A. Ronzani, R.N. Jabdaraghi, A. Bera, M. Ribeiro, D. Hazra, J.L. Senior, M. Prunnila, J. Govenius, J.S. Lehtinen, A. Kemppinen, APL Materials 12 (2024)."},"scopus_import":"1","intvolume":" 12","month":"07","acknowledgement":"We thank J. A. Sauls for useful discussions. For funding of our research project, we acknowledge the European Union’s Horizon 2020 Research and Innovation Program under Grant Agreement Nos. 862660/Quantum e-leaps, 899558/aCryComm, 766853/EFINED, and ECSEL programme 101007322/MatQu. This project has also received funding from Business Finland through Quantum Technologies Industrial (QuTI) Project No. 128291 and from Research Council of Finland through Grant Nos. 310909, 350220 and Finnish Quantum Flagship project 359284. This work was performed as part of the Research Council of Finland Centres of Excellence program (Project Nos. 336817, 336819, 352934, and 352935). We also acknowledge funding from an internal strategic innovation project of VTT related to the development of quantum computing technologies. This research was supported by the Scientific Service Units of IST Austria through resources provided by Electron Microscopy Facility. J. Senior acknowledges funding from the European Union’s Horizon 2020 Research and Innovation Program under the Marie Skłodowska-Curie Grant Agreement No. 754411. A. Ronzani acknowledges funding from Research Council of Finland (Research Fellowship Project No. 356542).","publication_identifier":{"eissn":["2166-532X"]},"day":"01","title":"Effect of ion irradiation on superconducting thin films","oa_version":"Published Version","date_created":"2024-07-14T22:01:11Z","type":"journal_article","has_accepted_license":"1","language":[{"iso":"eng"}],"doi":"10.1063/5.0202851","department":[{"_id":"AnHi"}],"file":[{"file_name":"2024_APLMaterial_Kohopaa.pdf","date_updated":"2024-07-16T06:30:30Z","relation":"main_file","file_size":9408198,"file_id":"17244","access_level":"open_access","date_created":"2024-07-16T06:30:30Z","checksum":"32a5cdf0ea9c937f806b6039f3219917","content_type":"application/pdf","creator":"dernst","success":1}],"acknowledged_ssus":[{"_id":"EM-Fac"}],"project":[{"_id":"260C2330-B435-11E9-9278-68D0E5697425","grant_number":"754411","name":"ISTplus - Postdoctoral Fellowships","call_identifier":"H2020"}],"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"volume":12,"fulldoi":"https://doi.org/10.1063/5.0202851","oa":1,"article_processing_charge":"Yes","isi":1,"_id":"17235","external_id":{"isi":["001260942200003"]},"year":"2024","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","article_type":"original","author":[{"full_name":"Kohopää, Katja","last_name":"Kohopää","first_name":"Katja"},{"first_name":"Alberto","full_name":"Ronzani, Alberto","last_name":"Ronzani"},{"first_name":"Robab Najafi","full_name":"Jabdaraghi, Robab Najafi","last_name":"Jabdaraghi"},{"first_name":"Arijit","last_name":"Bera","full_name":"Bera, Arijit"},{"last_name":"Ribeiro","full_name":"Ribeiro, Mário","first_name":"Mário"},{"last_name":"Hazra","full_name":"Hazra, Dibyendu","first_name":"Dibyendu"},{"last_name":"Senior","full_name":"Senior, Jorden L","first_name":"Jorden L","id":"5479D234-2D30-11EA-89CC-40953DDC885E","orcid":"0000-0002-0672-9295"},{"full_name":"Prunnila, Mika","last_name":"Prunnila","first_name":"Mika"},{"first_name":"Joonas","full_name":"Govenius, Joonas","last_name":"Govenius"},{"first_name":"Janne S.","last_name":"Lehtinen","full_name":"Lehtinen, Janne S."},{"first_name":"Antti","full_name":"Kemppinen, Antti","last_name":"Kemppinen"}],"abstract":[{"text":"We demonstrate ion irradiation by argon or gallium as a wafer-scale post-processing method to increase disorder in superconducting thin films. We study several widely used superconductors, both single-elements and compounds. We show that ion irradiation increases normal-state resistivity in all our films, which is expected to enable tuning their superconducting properties, for example, toward a higher kinetic inductance. We observe an increase in superconducting transition temperature for Al and MoSi and a decrease for Nb, NbN, and TiN. In MoSi, ion irradiation also improves the mixing of the two materials. We demonstrate the fabrication of an amorphous and homogeneous film of MoSi with uniform thickness, which is promising, for example, for superconducting nanowire single-photon detectors.","lang":"eng"}],"quality_controlled":"1","publication":"APL Materials","publication_status":"published","date_published":"2024-07-01T00:00:00Z","date_updated":"2025-09-08T08:10:58Z","ec_funded":1},{"publisher":"Elsevier","status":"public","article_number":"107708","file_date_updated":"2024-07-23T06:23:51Z","ddc":["570"],"corr_author":"1","month":"07","intvolume":" 364","citation":{"mla":"Vallet, Alicia, et al. “MAS NMR Experiments of Corynebacterial Cell Walls: Complementary 1H- and CPMAS CryoProbe-Enhanced 13C-Detected Experiments.” Journal of Magnetic Resonance, vol. 364, 107708, Elsevier, 2024, doi:10.1016/j.jmr.2024.107708.","short":"A. Vallet, I. Ayala, B. Perrone, A. Hassan, J.-P. Simorre, C. Bougault, P. Schanda, Journal of Magnetic Resonance 364 (2024).","ieee":"A. Vallet et al., “MAS NMR experiments of corynebacterial cell walls: Complementary 1H- and CPMAS CryoProbe-enhanced 13C-detected experiments,” Journal of Magnetic Resonance, vol. 364. Elsevier, 2024.","ama":"Vallet A, Ayala I, Perrone B, et al. MAS NMR experiments of corynebacterial cell walls: Complementary 1H- and CPMAS CryoProbe-enhanced 13C-detected experiments. Journal of Magnetic Resonance. 2024;364. doi:10.1016/j.jmr.2024.107708","chicago":"Vallet, Alicia, Isabel Ayala, Barbara Perrone, Alia Hassan, Jean-Pierre Simorre, Catherine Bougault, and Paul Schanda. “MAS NMR Experiments of Corynebacterial Cell Walls: Complementary 1H- and CPMAS CryoProbe-Enhanced 13C-Detected Experiments.” Journal of Magnetic Resonance. Elsevier, 2024. https://doi.org/10.1016/j.jmr.2024.107708.","apa":"Vallet, A., Ayala, I., Perrone, B., Hassan, A., Simorre, J.-P., Bougault, C., & Schanda, P. (2024). MAS NMR experiments of corynebacterial cell walls: Complementary 1H- and CPMAS CryoProbe-enhanced 13C-detected experiments. Journal of Magnetic Resonance. Elsevier. https://doi.org/10.1016/j.jmr.2024.107708","ista":"Vallet A, Ayala I, Perrone B, Hassan A, Simorre J-P, Bougault C, Schanda P. 2024. MAS NMR experiments of corynebacterial cell walls: Complementary 1H- and CPMAS CryoProbe-enhanced 13C-detected experiments. Journal of Magnetic Resonance. 364, 107708."},"scopus_import":"1","oa_version":"Published Version","day":"01","title":"MAS NMR experiments of corynebacterial cell walls: Complementary 1H- and CPMAS CryoProbe-enhanced 13C-detected experiments","acknowledgement":"This research was supported by the French Agence Nationale de la Recherche (\r\nANR-16-CE11-0030-12, TransPepNMR). This work used the platforms of the Grenoble Instruct-ERIC center (ISBG; UAR 3518 CNRS-CEA-UGA-EMBL) within the Grenoble Partnership for Structural Biology (PSB), supported by FRISBI, France (ANR-10-INBS-0005-02\r\n) and GRAL, financed within the University Grenoble Alpes graduate school (Ecoles Universitaires de Recherche), CBH-EUR-GS (ANR-17-EURE-0003). Financial support from the IR INFRANALYTICS FR2054 for conducting the research and intramural funding by the Institute of Science and Technology Austria (ISTA) are gratefully acknowledged.","publication_identifier":{"issn":["1090-7807"]},"doi":"10.1016/j.jmr.2024.107708","department":[{"_id":"PaSc"}],"file":[{"date_created":"2024-07-23T06:23:51Z","access_level":"open_access","file_name":"2024_JourMagneticResonance_Vallet.pdf","date_updated":"2024-07-23T06:23:51Z","relation":"main_file","file_size":2236665,"file_id":"17316","content_type":"application/pdf","checksum":"4b59f4f0c287ecbafd808da1212ced38","creator":"dernst","success":1}],"has_accepted_license":"1","type":"journal_article","language":[{"iso":"eng"}],"date_created":"2024-07-22T07:44:10Z","oa":1,"article_processing_charge":"Yes (via OA deal)","fulldoi":"https://doi.org/10.1016/j.jmr.2024.107708","volume":364,"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"abstract":[{"lang":"eng","text":"Bacterial cell walls are gigadalton-large cross-linked polymers with a wide range of motional amplitudes, including rather rigid as well as highly flexible parts. Magic-angle spinning NMR is a powerful method to obtain atomic-level information about intact cell walls. Here we investigate sensitivity and information content of different homonuclear 13Csingle bond13C and heteronuclear 1Hsingle bond15N, 1Hsingle bond13C and 15Nsingle bond13C correlation experiments. We demonstrate that a CPMAS CryoProbe yields ca. 8-fold increased signal-to-noise over a room-temperature probe, or a ca. 3–4-fold larger per-mass sensitivity. The increased sensitivity allowed to obtain high-resolution spectra even on intact bacteria. Moreover, we compare resolution and sensitivity of 1H MAS experiments obtained at 100 kHz vs. 55 kHz. Our study provides useful hints for choosing experiments to extract atomic-level details on cell-wall samples."}],"publication":"Journal of Magnetic Resonance","quality_controlled":"1","article_type":"original","author":[{"full_name":"Vallet, Alicia","last_name":"Vallet","first_name":"Alicia"},{"full_name":"Ayala, Isabel","last_name":"Ayala","first_name":"Isabel"},{"full_name":"Perrone, Barbara","last_name":"Perrone","first_name":"Barbara"},{"last_name":"Hassan","full_name":"Hassan, Alia","first_name":"Alia"},{"first_name":"Jean-Pierre","full_name":"Simorre, Jean-Pierre","last_name":"Simorre"},{"full_name":"Bougault, Catherine","last_name":"Bougault","first_name":"Catherine"},{"orcid":"0000-0002-9350-7606","id":"7B541462-FAF6-11E9-A490-E8DFE5697425","first_name":"Paul","full_name":"Schanda, Paul","last_name":"Schanda"}],"related_material":{"record":[{"relation":"research_data","status":"public","id":"17042"}]},"year":"2024","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","OA_place":"publisher","isi":1,"_id":"17291","external_id":{"pmid":["38901173"],"isi":["001259302800001"]},"date_published":"2024-07-01T00:00:00Z","OA_type":"hybrid","date_updated":"2025-09-09T12:01:41Z","pmid":1,"publication_status":"published"},{"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"citation":{"short":"P. Surendranadh, H. Sachdeva, (2024).","ieee":"P. Surendranadh and H. Sachdeva, “Mathematica notebook for ‘Effect of assortative mating and sexual selection on polygenic barriers to gene flow.’” Institute of Science and Technology Austria, 2024.","mla":"Surendranadh, Parvathy, and Himani Sachdeva. Mathematica Notebook for “Effect of Assortative Mating and Sexual Selection on Polygenic Barriers to Gene Flow.” Institute of Science and Technology Austria, 2024, doi:10.15479/AT:ISTA:17344.","ista":"Surendranadh P, Sachdeva H. 2024. Mathematica notebook for ‘Effect of assortative mating and sexual selection on polygenic barriers to gene flow’, Institute of Science and Technology Austria, 10.15479/AT:ISTA:17344.","apa":"Surendranadh, P., & Sachdeva, H. (2024). Mathematica notebook for “Effect of assortative mating and sexual selection on polygenic barriers to gene flow.” Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:17344","ama":"Surendranadh P, Sachdeva H. Mathematica notebook for “Effect of assortative mating and sexual selection on polygenic barriers to gene flow.” 2024. doi:10.15479/AT:ISTA:17344","chicago":"Surendranadh, Parvathy, and Himani Sachdeva. “Mathematica Notebook for ‘Effect of Assortative Mating and Sexual Selection on Polygenic Barriers to Gene Flow.’” Institute of Science and Technology Austria, 2024. https://doi.org/10.15479/AT:ISTA:17344."},"fulldoi":"https://doi.org/10.15479/AT:ISTA:17344","month":"07","oa":1,"article_processing_charge":"No","ddc":["576"],"file_date_updated":"2024-07-29T13:51:11Z","acknowledged_ssus":[{"_id":"ScienComp"}],"status":"public","publisher":"Institute of Science and Technology Austria","date_created":"2024-07-29T14:01:43Z","type":"research_data","has_accepted_license":"1","date_updated":"2025-01-14T13:02:59Z","date_published":"2024-07-01T00:00:00Z","file":[{"file_size":726132,"relation":"main_file","date_updated":"2024-07-29T13:51:11Z","file_name":"Submission.nb","file_id":"17345","date_created":"2024-07-29T13:51:11Z","access_level":"open_access","checksum":"75bdbc7ad7cc6afe4459bc4a8824a302","content_type":"application/octet-stream","success":1,"creator":"psurendr"}],"department":[{"_id":"GradSch"},{"_id":"NiBa"}],"doi":"10.15479/AT:ISTA:17344","_id":"17344","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"Mathematica notebook for 'Effect of assortative mating and sexual selection on polygenic barriers to gene flow'","year":"2024","oa_version":"Published Version","author":[{"last_name":"Surendranadh","full_name":"Surendranadh, Parvathy","first_name":"Parvathy","id":"455235B8-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6395-386X"},{"last_name":"Sachdeva","full_name":"Sachdeva, Himani","first_name":"Himani"}],"abstract":[{"lang":"eng","text":"This file contains the Mathematica notebook associated with the paper Effect of assortative mating and sexual selection on polygenic barriers to gene flow. It contains the numerical approximations, analyses, and simulations used in the study. "}]}]