[{"main_file_link":[{"open_access":"1","url":"10.48550/arXiv.2303.12926"}],"year":"2024","intvolume":"       287","department":[{"_id":"JaMa"}],"external_id":{"arxiv":["2303.12926"],"isi":["001271814000001"]},"language":[{"iso":"eng"}],"corr_author":"1","OA_place":"repository","date_created":"2024-07-21T22:01:00Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","oa":1,"acknowledgement":"The authors thank Max Fathi and Pierre Cardaliaguet for fruitful discussions and Emanuel Indrei for stimulating interactions. They also thank an anonymous referee for useful comments and suggestions which have led to an improvement of the manuscript. They also want to express their gratitude to the managing editor, L. Gross, for his encouragements and questions. G.B. has been funded by the European Union's Horizon 2020 research and innovation program under the Marie Sklodowska-Curie grant agreement No 754362. This work has been (partially) supported by the Project Conviviality ANR-23-CE40-0003 of the French National Research Agency.","scopus_import":"1","day":"15","OA_type":"green","doi":"10.1016/j.jfa.2024.110562","arxiv":1,"publisher":"Elsevier","quality_controlled":"1","publication":"Journal of Functional Analysis","publication_status":"published","author":[{"last_name":"Brigati","full_name":"Brigati, Giovanni","id":"63ff57e8-1fbb-11ee-88f2-f558ffc59cf1","first_name":"Giovanni"},{"full_name":"Dolbeault, Jean","last_name":"Dolbeault","first_name":"Jean"},{"full_name":"Simonov, Nikita","last_name":"Simonov","first_name":"Nikita"}],"date_published":"2024-10-15T00:00:00Z","article_number":"110562","title":"Stability for the logarithmic Sobolev inequality","isi":1,"oa_version":"Preprint","article_type":"original","date_updated":"2025-09-08T08:25:34Z","issue":"8","month":"10","volume":287,"abstract":[{"text":"This paper is devoted to stability results for the Gaussian logarithmic Sobolev inequality, with explicit stability constants.\r\n\r\n","lang":"eng"}],"_id":"17277","status":"public","publication_identifier":{"eissn":["1096-0783"],"issn":["0022-1236"]},"type":"journal_article","citation":{"mla":"Brigati, Giovanni, et al. “Stability for the Logarithmic Sobolev Inequality.” <i>Journal of Functional Analysis</i>, vol. 287, no. 8, 110562, Elsevier, 2024, doi:<a href=\"https://doi.org/10.1016/j.jfa.2024.110562\">10.1016/j.jfa.2024.110562</a>.","ieee":"G. Brigati, J. Dolbeault, and N. Simonov, “Stability for the logarithmic Sobolev inequality,” <i>Journal of Functional Analysis</i>, vol. 287, no. 8. Elsevier, 2024.","chicago":"Brigati, Giovanni, Jean Dolbeault, and Nikita Simonov. “Stability for the Logarithmic Sobolev Inequality.” <i>Journal of Functional Analysis</i>. Elsevier, 2024. <a href=\"https://doi.org/10.1016/j.jfa.2024.110562\">https://doi.org/10.1016/j.jfa.2024.110562</a>.","ista":"Brigati G, Dolbeault J, Simonov N. 2024. Stability for the logarithmic Sobolev inequality. Journal of Functional Analysis. 287(8), 110562.","short":"G. Brigati, J. Dolbeault, N. Simonov, Journal of Functional Analysis 287 (2024).","apa":"Brigati, G., Dolbeault, J., &#38; Simonov, N. (2024). Stability for the logarithmic Sobolev inequality. <i>Journal of Functional Analysis</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.jfa.2024.110562\">https://doi.org/10.1016/j.jfa.2024.110562</a>","ama":"Brigati G, Dolbeault J, Simonov N. Stability for the logarithmic Sobolev inequality. <i>Journal of Functional Analysis</i>. 2024;287(8). doi:<a href=\"https://doi.org/10.1016/j.jfa.2024.110562\">10.1016/j.jfa.2024.110562</a>"},"article_processing_charge":"No"},{"oa_version":"None","isi":1,"article_type":"review","date_updated":"2025-09-08T08:27:03Z","issue":"7","month":"07","abstract":[{"lang":"eng","text":"In a recent issue of Cell, Zhang et al.1 demonstrate that mechanical features of a solid tumor can drive T cells into dysfunctionality and identify pathways that revert this “exhausted” state."}],"volume":31,"_id":"17279","status":"public","publication_identifier":{"eissn":["2451-9448"],"issn":["2451-9456"]},"type":"journal_article","citation":{"ieee":"M. Avellaneda Sarrió and M. K. Sixt, “Rescuing T cells from stiff tumors,” <i>Cell Chemical Biology</i>, vol. 31, no. 7. Elsevier, pp. 1242–1243, 2024.","chicago":"Avellaneda Sarrió, Mario, and Michael K Sixt. “Rescuing T Cells from Stiff Tumors.” <i>Cell Chemical Biology</i>. Elsevier, 2024. <a href=\"https://doi.org/10.1016/j.chembiol.2024.06.011\">https://doi.org/10.1016/j.chembiol.2024.06.011</a>.","mla":"Avellaneda Sarrió, Mario, and Michael K. Sixt. “Rescuing T Cells from Stiff Tumors.” <i>Cell Chemical Biology</i>, vol. 31, no. 7, Elsevier, 2024, pp. 1242–43, doi:<a href=\"https://doi.org/10.1016/j.chembiol.2024.06.011\">10.1016/j.chembiol.2024.06.011</a>.","short":"M. Avellaneda Sarrió, M.K. Sixt, Cell Chemical Biology 31 (2024) 1242–1243.","ista":"Avellaneda Sarrió M, Sixt MK. 2024. Rescuing T cells from stiff tumors. Cell Chemical Biology. 31(7), 1242–1243.","apa":"Avellaneda Sarrió, M., &#38; Sixt, M. K. (2024). Rescuing T cells from stiff tumors. <i>Cell Chemical Biology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.chembiol.2024.06.011\">https://doi.org/10.1016/j.chembiol.2024.06.011</a>","ama":"Avellaneda Sarrió M, Sixt MK. Rescuing T cells from stiff tumors. <i>Cell Chemical Biology</i>. 2024;31(7):1242-1243. doi:<a href=\"https://doi.org/10.1016/j.chembiol.2024.06.011\">10.1016/j.chembiol.2024.06.011</a>"},"article_processing_charge":"No","pmid":1,"quality_controlled":"1","publication":"Cell Chemical Biology","publication_status":"published","page":"1242-1243","author":[{"full_name":"Avellaneda Sarrió, Mario","orcid":"0000-0001-6406-524X","last_name":"Avellaneda Sarrió","first_name":"Mario","id":"DC4BA84C-56E6-11EA-AD5D-348C3DDC885E"},{"orcid":"0000-0002-6620-9179","last_name":"Sixt","full_name":"Sixt, Michael K","id":"41E9FBEA-F248-11E8-B48F-1D18A9856A87","first_name":"Michael K"}],"date_published":"2024-07-18T00:00:00Z","title":"Rescuing T cells from stiff tumors","scopus_import":"1","day":"18","doi":"10.1016/j.chembiol.2024.06.011","publisher":"Elsevier","year":"2024","intvolume":"        31","department":[{"_id":"MiSi"}],"external_id":{"isi":["001275725000001"],"pmid":["39029454"]},"language":[{"iso":"eng"}],"corr_author":"1","date_created":"2024-07-21T22:01:00Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345"},{"publisher":"American Association for the Advancement of Science","doi":"10.1126/sciadv.adk5462","DOAJ_listed":"1","day":"12","OA_type":"gold","scopus_import":"1","acknowledgement":"Ajap1HA/HA and Ajap1W183C/+ mice were generated in collaboration with Pawel Pelczar at the center for transgenic models at the University of Basel, Switzerland. We thank the imaging core facility (IMCF, University of Basel) and in particular A. Ferrand for the technical assistance provided on the OMX 3D-SIM microscope.\r\nThis work was supported by a grant from the Swiss National Science Foundation (SNF) to B.B. (31003A-152970, 310030B-201291), an NIH grant to E.A. and E.H.S. (R01NS058721), DFG grants to B.F. (TRR 152 project ID 239283807, FA 332/15-1, 16-1), and grants to P.S. from AIMS-2-TRIALS, which are supported by the Innovative Medicines Initiatives from the European Commission joint undertaking under grant agreement No 777394.","ddc":["570"],"file_date_updated":"2024-07-22T06:29:27Z","oa":1,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","license":"https://creativecommons.org/licenses/by/4.0/","date_created":"2024-07-21T22:01:01Z","OA_place":"publisher","external_id":{"isi":["001280159000022"],"pmid":["38985877"]},"language":[{"iso":"eng"}],"department":[{"_id":"RySh"},{"_id":"PreCl"}],"intvolume":"        10","year":"2024","citation":{"ista":"Früh S, Boudkkazi S, Koppensteiner P, Sereikaite V, Chen LY, Fernandez-Fernandez D, Rem PD, Ulrich D, Schwenk J, Chen Z, Monnier EL, Fritzius T, Innocenti SM, Besseyrias V, Trovò L, Stawarski M, Argilli E, Sherr EH, Van Bon B, Kamsteeg EJ, Iascone M, Pilotta A, Cutrì MR, Azamian MS, Hernández-García A, Lalani SR, Rosenfeld JA, Zhao X, Vogel TP, Ona H, Scott DA, Scheiffele P, Strømgaard K, Tafti M, Gassmann M, Fakler B, Shigemoto R, Bettler B. 2024. Monoallelic de novo AJAP1 loss-of- function variants disrupt trans-synaptic control of neurotransmitter release. Science Advances. 10(28), adk5462.","short":"S. Früh, S. Boudkkazi, P. Koppensteiner, V. Sereikaite, L.Y. Chen, D. Fernandez-Fernandez, P.D. Rem, D. Ulrich, J. Schwenk, Z. Chen, E.L. Monnier, T. Fritzius, S.M. Innocenti, V. Besseyrias, L. Trovò, M. Stawarski, E. Argilli, E.H. Sherr, B. Van Bon, E.J. Kamsteeg, M. Iascone, A. Pilotta, M.R. Cutrì, M.S. Azamian, A. Hernández-García, S.R. Lalani, J.A. Rosenfeld, X. Zhao, T.P. Vogel, H. Ona, D.A. Scott, P. Scheiffele, K. Strømgaard, M. Tafti, M. Gassmann, B. Fakler, R. Shigemoto, B. Bettler, Science Advances 10 (2024).","mla":"Früh, Simon, et al. “Monoallelic de Novo AJAP1 Loss-of- Function Variants Disrupt Trans-Synaptic Control of Neurotransmitter Release.” <i>Science Advances</i>, vol. 10, no. 28, adk5462, American Association for the Advancement of Science, 2024, doi:<a href=\"https://doi.org/10.1126/sciadv.adk5462\">10.1126/sciadv.adk5462</a>.","chicago":"Früh, Simon, Sami Boudkkazi, Peter Koppensteiner, Vita Sereikaite, Li Yuan Chen, Diego Fernandez-Fernandez, Pascal D. Rem, et al. “Monoallelic de Novo AJAP1 Loss-of- Function Variants Disrupt Trans-Synaptic Control of Neurotransmitter Release.” <i>Science Advances</i>. American Association for the Advancement of Science, 2024. <a href=\"https://doi.org/10.1126/sciadv.adk5462\">https://doi.org/10.1126/sciadv.adk5462</a>.","ieee":"S. Früh <i>et al.</i>, “Monoallelic de novo AJAP1 loss-of- function variants disrupt trans-synaptic control of neurotransmitter release,” <i>Science Advances</i>, vol. 10, no. 28. American Association for the Advancement of Science, 2024.","ama":"Früh S, Boudkkazi S, Koppensteiner P, et al. Monoallelic de novo AJAP1 loss-of- function variants disrupt trans-synaptic control of neurotransmitter release. <i>Science Advances</i>. 2024;10(28). doi:<a href=\"https://doi.org/10.1126/sciadv.adk5462\">10.1126/sciadv.adk5462</a>","apa":"Früh, S., Boudkkazi, S., Koppensteiner, P., Sereikaite, V., Chen, L. Y., Fernandez-Fernandez, D., … Bettler, B. (2024). Monoallelic de novo AJAP1 loss-of- function variants disrupt trans-synaptic control of neurotransmitter release. <i>Science Advances</i>. American Association for the Advancement of Science. <a href=\"https://doi.org/10.1126/sciadv.adk5462\">https://doi.org/10.1126/sciadv.adk5462</a>"},"article_processing_charge":"Yes","publication_identifier":{"eissn":["2375-2548"]},"type":"journal_article","_id":"17280","status":"public","issue":"28","date_updated":"2025-09-08T08:15:54Z","volume":10,"month":"07","abstract":[{"lang":"eng","text":"Adherens junction–associated protein 1 (AJAP1) has been implicated in brain diseases; however, a pathogenic mechanism has not been identified. AJAP1 is widely expressed in neurons and binds to γ-aminobutyric acid type B receptors (GBRs), which inhibit neurotransmitter release at most synapses in the brain. Here, we show that AJAP1 is selectively expressed in dendrites and trans-synaptically recruits GBRs to presynaptic sites of neurons expressing AJAP1. We have identified several monoallelic AJAP1 variants in individuals with epilepsy and/or neurodevelopmental disorders. Specifically, we show that the variant p.(W183C) lacks binding to GBRs, resulting in the inability to recruit them. Ultrastructural analysis revealed significantly decreased presynaptic GBR levels in Ajap1−/− and Ajap1W183C/+ mice. Consequently, these mice exhibited reduced GBR-mediated presynaptic inhibition at excitatory and inhibitory synapses, along with impaired synaptic plasticity. Our study reveals that AJAP1 enables the postsynaptic neuron to regulate the level of presynaptic GBR-mediated inhibition, supporting the clinical relevance of loss-of-function AJAP1 variants."}],"article_type":"original","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png"},"isi":1,"oa_version":"Published Version","has_accepted_license":"1","title":"Monoallelic de novo AJAP1 loss-of- function variants disrupt trans-synaptic control of neurotransmitter release","author":[{"first_name":"Simon","last_name":"Früh","full_name":"Früh, Simon"},{"first_name":"Sami","full_name":"Boudkkazi, Sami","last_name":"Boudkkazi"},{"id":"3B8B25A8-F248-11E8-B48F-1D18A9856A87","first_name":"Peter","orcid":"0000-0002-3509-1948","last_name":"Koppensteiner","full_name":"Koppensteiner, Peter"},{"last_name":"Sereikaite","full_name":"Sereikaite, Vita","first_name":"Vita"},{"full_name":"Chen, Li Yuan","last_name":"Chen","first_name":"Li Yuan"},{"first_name":"Diego","full_name":"Fernandez-Fernandez, Diego","last_name":"Fernandez-Fernandez"},{"first_name":"Pascal D.","last_name":"Rem","full_name":"Rem, Pascal D."},{"first_name":"Daniel","full_name":"Ulrich, Daniel","last_name":"Ulrich"},{"last_name":"Schwenk","full_name":"Schwenk, Jochen","first_name":"Jochen"},{"first_name":"Ziyang","full_name":"Chen, Ziyang","last_name":"Chen"},{"first_name":"Elodie Le","last_name":"Monnier","full_name":"Monnier, Elodie Le"},{"first_name":"Thorsten","full_name":"Fritzius, Thorsten","last_name":"Fritzius"},{"last_name":"Innocenti","full_name":"Innocenti, Sabrina M.","first_name":"Sabrina M."},{"first_name":"Valérie","full_name":"Besseyrias, Valérie","last_name":"Besseyrias"},{"first_name":"Luca","last_name":"Trovò","full_name":"Trovò, Luca"},{"first_name":"Michal","last_name":"Stawarski","full_name":"Stawarski, Michal"},{"first_name":"Emanuela","last_name":"Argilli","full_name":"Argilli, Emanuela"},{"last_name":"Sherr","full_name":"Sherr, Elliott H.","first_name":"Elliott H."},{"first_name":"Bregje","full_name":"Van Bon, Bregje","last_name":"Van Bon"},{"first_name":"Erik Jan","last_name":"Kamsteeg","full_name":"Kamsteeg, Erik Jan"},{"first_name":"Maria","full_name":"Iascone, Maria","last_name":"Iascone"},{"full_name":"Pilotta, Alba","last_name":"Pilotta","first_name":"Alba"},{"first_name":"Maria R.","last_name":"Cutrì","full_name":"Cutrì, Maria R."},{"first_name":"Mahshid S.","last_name":"Azamian","full_name":"Azamian, Mahshid S."},{"first_name":"Andrés","full_name":"Hernández-García, Andrés","last_name":"Hernández-García"},{"first_name":"Seema R.","full_name":"Lalani, Seema R.","last_name":"Lalani"},{"first_name":"Jill A.","last_name":"Rosenfeld","full_name":"Rosenfeld, Jill A."},{"first_name":"Xiaonan","full_name":"Zhao, Xiaonan","last_name":"Zhao"},{"last_name":"Vogel","full_name":"Vogel, Tiphanie P.","first_name":"Tiphanie P."},{"full_name":"Ona, Herda","last_name":"Ona","first_name":"Herda"},{"first_name":"Daryl A.","full_name":"Scott, Daryl A.","last_name":"Scott"},{"first_name":"Peter","last_name":"Scheiffele","full_name":"Scheiffele, Peter"},{"full_name":"Strømgaard, Kristian","last_name":"Strømgaard","first_name":"Kristian"},{"first_name":"Mehdi","last_name":"Tafti","full_name":"Tafti, Mehdi"},{"first_name":"Martin","full_name":"Gassmann, Martin","last_name":"Gassmann"},{"first_name":"Bernd","last_name":"Fakler","full_name":"Fakler, Bernd"},{"last_name":"Shigemoto","orcid":"0000-0001-8761-9444","full_name":"Shigemoto, Ryuichi","id":"499F3ABC-F248-11E8-B48F-1D18A9856A87","first_name":"Ryuichi"},{"last_name":"Bettler","full_name":"Bettler, Bernhard","first_name":"Bernhard"}],"date_published":"2024-07-12T00:00:00Z","article_number":"adk5462","publication_status":"published","file":[{"file_id":"17287","content_type":"application/pdf","access_level":"open_access","file_name":"2024_ScienceAdv_Früh.pdf","file_size":7241489,"date_created":"2024-07-22T06:29:27Z","date_updated":"2024-07-22T06:29:27Z","relation":"main_file","success":1,"checksum":"9cbc4501fcd4ba1c0811fd244031422b","creator":"dernst"}],"publication":"Science Advances","pmid":1,"quality_controlled":"1"},{"author":[{"full_name":"Campbell, Andrew J","last_name":"Campbell","first_name":"Andrew J","id":"582b06a9-1f1c-11ee-b076-82ffce00dde4"},{"full_name":"O'Rourke, Sean","last_name":"O'Rourke","first_name":"Sean"},{"first_name":"David T","id":"4845BF6A-F248-11E8-B48F-1D18A9856A87","full_name":"Renfrew, David T","orcid":"0000-0003-3493-121X","last_name":"Renfrew"}],"date_published":"2024-07-01T00:00:00Z","title":"The fractional free convolution of R-diagonal elements and random polynomials under repeated differentiation","quality_controlled":"1","publication":"International Mathematics Research Notices","file":[{"file_name":"2024_IMRN_Campbell.pdf","access_level":"open_access","file_id":"17288","content_type":"application/pdf","file_size":1233508,"date_created":"2024-07-22T06:40:19Z","date_updated":"2024-07-22T06:40:19Z","checksum":"f36a7dbf53f23d5833db711052e69b49","relation":"main_file","creator":"dernst","success":1}],"page":"10189-10218","publication_status":"published","status":"public","_id":"17281","publication_identifier":{"eissn":["1687-0247"],"issn":["1073-7928"]},"type":"journal_article","citation":{"ama":"Campbell AJ, O’Rourke S, Renfrew DT. The fractional free convolution of R-diagonal elements and random polynomials under repeated differentiation. <i>International Mathematics Research Notices</i>. 2024;2024(13):10189-10218. doi:<a href=\"https://doi.org/10.1093/imrn/rnae062\">10.1093/imrn/rnae062</a>","apa":"Campbell, A. J., O’Rourke, S., &#38; Renfrew, D. T. (2024). The fractional free convolution of R-diagonal elements and random polynomials under repeated differentiation. <i>International Mathematics Research Notices</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/imrn/rnae062\">https://doi.org/10.1093/imrn/rnae062</a>","short":"A.J. Campbell, S. O’Rourke, D.T. Renfrew, International Mathematics Research Notices 2024 (2024) 10189–10218.","ista":"Campbell AJ, O’Rourke S, Renfrew DT. 2024. The fractional free convolution of R-diagonal elements and random polynomials under repeated differentiation. International Mathematics Research Notices. 2024(13), 10189–10218.","ieee":"A. J. Campbell, S. O’Rourke, and D. T. Renfrew, “The fractional free convolution of R-diagonal elements and random polynomials under repeated differentiation,” <i>International Mathematics Research Notices</i>, vol. 2024, no. 13. Oxford University Press, pp. 10189–10218, 2024.","chicago":"Campbell, Andrew J, Sean O’Rourke, and David T Renfrew. “The Fractional Free Convolution of R-Diagonal Elements and Random Polynomials under Repeated Differentiation.” <i>International Mathematics Research Notices</i>. Oxford University Press, 2024. <a href=\"https://doi.org/10.1093/imrn/rnae062\">https://doi.org/10.1093/imrn/rnae062</a>.","mla":"Campbell, Andrew J., et al. “The Fractional Free Convolution of R-Diagonal Elements and Random Polynomials under Repeated Differentiation.” <i>International Mathematics Research Notices</i>, vol. 2024, no. 13, Oxford University Press, 2024, pp. 10189–218, doi:<a href=\"https://doi.org/10.1093/imrn/rnae062\">10.1093/imrn/rnae062</a>."},"article_processing_charge":"Yes (via OA deal)","oa_version":"Published Version","isi":1,"has_accepted_license":"1","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png"},"article_type":"original","date_updated":"2025-09-08T08:16:32Z","issue":"13","volume":2024,"month":"07","abstract":[{"lang":"eng","text":"We extend the free convolution of Brown measures of R-diagonal elements introduced by Kösters and Tikhomirov [ 28] to fractional powers. We then show how this fractional free convolution arises naturally when studying the roots of random polynomials with independent coefficients under repeated differentiation. When the proportion of derivatives to the degree approaches one, we establish central limit theorem-type behavior and discuss stable distributions."}],"external_id":{"isi":["001198019500001"]},"language":[{"iso":"eng"}],"corr_author":"1","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","date_created":"2024-07-21T22:01:01Z","file_date_updated":"2024-07-22T06:40:19Z","oa":1,"department":[{"_id":"LaEr"}],"year":"2024","intvolume":"      2024","day":"01","doi":"10.1093/imrn/rnae062","publisher":"Oxford University Press","ddc":["510"],"acknowledgement":"This work was supported by the National Science Foundation [Grant No. DMS-2143142 to S.O.]; and the European Research Council [Grant No. 101020331].The third author acknowledges the support of the University of Colorado Boulder, where a portion of this work was completed. The authors thank Martin Auer, Vadim Gorin, Brian Hall, and Noah Williams for comments, corrections, and references. The authors also wish to thank the anonymous referees for useful feedback and corrections.","scopus_import":"1"},{"publication_status":"published","publication":"Calculus of Variations and Partial Differential Equations","file":[{"checksum":"a0cf0e0ba2157aabb287cb597be17dac","creator":"dernst","success":1,"relation":"main_file","date_updated":"2024-07-22T07:05:32Z","date_created":"2024-07-22T07:05:32Z","file_size":416622,"file_id":"17289","access_level":"open_access","content_type":"application/pdf","file_name":"2024_CalculusVariations_Brooks.pdf"}],"pmid":1,"quality_controlled":"1","title":"Characterisation of gradient flows for a given functional","author":[{"first_name":"Morris","id":"B7ECF9FC-AA38-11E9-AC9A-0930E6697425","full_name":"Brooks, Morris","orcid":"0000-0002-6249-0928","last_name":"Brooks"},{"id":"4C5696CE-F248-11E8-B48F-1D18A9856A87","first_name":"Jan","orcid":"0000-0002-0845-1338","last_name":"Maas","full_name":"Maas, Jan"}],"article_number":"153","date_published":"2024-07-01T00:00:00Z","issue":"6","date_updated":"2025-09-08T08:24:51Z","month":"07","abstract":[{"lang":"eng","text":"Let  X  be a vector field and  Y  be a co-vector field on a smooth manifold  M. Does there exist a smooth Riemannian metric  gαβ  on  M  such that  Yβ=gαβXα ? The main result of this note gives necessary and sufficient conditions for this to be true. As an application of this result we show that a finite-dimensional ergodic Lindblad equation admits a gradient flow structure for the von Neumann relative entropy if and only if the condition of BKM-detailed balance holds."}],"volume":63,"article_type":"original","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png"},"oa_version":"Published Version","isi":1,"has_accepted_license":"1","citation":{"ista":"Brooks M, Maas J. 2024. Characterisation of gradient flows for a given functional. Calculus of Variations and Partial Differential Equations. 63(6), 153.","short":"M. Brooks, J. Maas, Calculus of Variations and Partial Differential Equations 63 (2024).","mla":"Brooks, Morris, and Jan Maas. “Characterisation of Gradient Flows for a given Functional.” <i>Calculus of Variations and Partial Differential Equations</i>, vol. 63, no. 6, 153, Springer Nature, 2024, doi:<a href=\"https://doi.org/10.1007/s00526-024-02755-z\">10.1007/s00526-024-02755-z</a>.","chicago":"Brooks, Morris, and Jan Maas. “Characterisation of Gradient Flows for a given Functional.” <i>Calculus of Variations and Partial Differential Equations</i>. Springer Nature, 2024. <a href=\"https://doi.org/10.1007/s00526-024-02755-z\">https://doi.org/10.1007/s00526-024-02755-z</a>.","ieee":"M. Brooks and J. Maas, “Characterisation of gradient flows for a given functional,” <i>Calculus of Variations and Partial Differential Equations</i>, vol. 63, no. 6. Springer Nature, 2024.","ama":"Brooks M, Maas J. Characterisation of gradient flows for a given functional. <i>Calculus of Variations and Partial Differential Equations</i>. 2024;63(6). doi:<a href=\"https://doi.org/10.1007/s00526-024-02755-z\">10.1007/s00526-024-02755-z</a>","apa":"Brooks, M., &#38; Maas, J. (2024). Characterisation of gradient flows for a given functional. <i>Calculus of Variations and Partial Differential Equations</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s00526-024-02755-z\">https://doi.org/10.1007/s00526-024-02755-z</a>"},"article_processing_charge":"Yes (via OA deal)","publication_identifier":{"issn":["0944-2669"],"eissn":["1432-0835"]},"type":"journal_article","status":"public","_id":"17282","project":[{"call_identifier":"H2020","grant_number":"716117","_id":"256E75B8-B435-11E9-9278-68D0E5697425","name":"Optimal Transport and Stochastic Dynamics"},{"grant_number":"F6504","name":"Taming Complexity in Partial Differential Systems","_id":"fc31cba2-9c52-11eb-aca3-ff467d239cd2"}],"department":[{"_id":"JaMa"}],"intvolume":"        63","year":"2024","ec_funded":1,"file_date_updated":"2024-07-22T07:05:32Z","oa":1,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","date_created":"2024-07-21T22:01:01Z","corr_author":"1","external_id":{"pmid":["38947856"],"isi":["001258097800003"],"arxiv":["2209.11149"]},"language":[{"iso":"eng"}],"scopus_import":"1","acknowledgement":"Open access funding provided by Institute of Science and Technology (IST Austria).J. M. gratefully acknowledges support by the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (grant agreement No 716117), and by the Austrian Science Fund (FWF), Project SFB F65. We thank the anonymous referee for valuable comments on the paper.","ddc":["510"],"publisher":"Springer Nature","doi":"10.1007/s00526-024-02755-z","arxiv":1,"day":"01"},{"corr_author":"1","OA_place":"publisher","external_id":{"arxiv":["2404.03430"]},"language":[{"iso":"eng"}],"file_date_updated":"2024-07-22T07:17:14Z","oa":1,"date_created":"2024-07-21T22:01:01Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","project":[{"grant_number":"863818","call_identifier":"H2020","_id":"0599E47C-7A3F-11EA-A408-12923DDC885E","name":"Formal Methods for Stochastic Models: Algorithms and Applications"}],"intvolume":"         8","department":[{"_id":"KrCh"},{"_id":"GradSch"}],"year":"2024","ec_funded":1,"day":"20","OA_type":"hybrid","publisher":"Association for Computing Machinery","doi":"10.1145/3656462","arxiv":1,"scopus_import":"1","acknowledgement":"This research was partially supported by the ERC CoG 863818 (ForM-SMArt) grant. Petr Novotný\r\nis supported by the Czech Science Foundation grant no. GA23-06963S.\r\n","ddc":["000"],"author":[{"id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","first_name":"Krishnendu","orcid":"0000-0002-4561-241X","last_name":"Chatterjee","full_name":"Chatterjee, Krishnendu"},{"first_name":"Ehsan","id":"103b4fa0-896a-11ed-bdf8-87b697bef40d","full_name":"Kafshdar Goharshadi, Ehsan","orcid":"0000-0002-8595-0587","last_name":"Kafshdar Goharshadi"},{"first_name":"Petr","id":"3CC3B868-F248-11E8-B48F-1D18A9856A87","full_name":"Novotný, Petr","last_name":"Novotný"},{"id":"294AA7A6-F248-11E8-B48F-1D18A9856A87","first_name":"Dorde","last_name":"Zikelic","orcid":"0000-0002-4681-1699","full_name":"Zikelic, Dorde"}],"date_published":"2024-06-20T00:00:00Z","article_number":"232","title":"Equivalence and similarity refutation for probabilistic programs","publication":"Proceedings of the ACM on Programming Languages","file":[{"file_id":"17290","content_type":"application/pdf","file_name":"2024_ACMProgLang_Chatterjee.pdf","access_level":"open_access","date_created":"2024-07-22T07:17:14Z","file_size":355421,"date_updated":"2024-07-22T07:17:14Z","checksum":"8cbf220f284a4a87d093db5320c5afdd","creator":"dernst","success":1,"relation":"main_file"}],"quality_controlled":"1","publication_status":"published","_id":"17283","status":"public","citation":{"short":"K. Chatterjee, E. Goharshady, P. Novotný, D. Zikelic, Proceedings of the ACM on Programming Languages 8 (2024).","ista":"Chatterjee K, Goharshady E, Novotný P, Zikelic D. 2024. Equivalence and similarity refutation for probabilistic programs. Proceedings of the ACM on Programming Languages. 8, 232.","chicago":"Chatterjee, Krishnendu, Ehsan Goharshady, Petr Novotný, and Dorde Zikelic. “Equivalence and Similarity Refutation for Probabilistic Programs.” <i>Proceedings of the ACM on Programming Languages</i>. Association for Computing Machinery, 2024. <a href=\"https://doi.org/10.1145/3656462\">https://doi.org/10.1145/3656462</a>.","ieee":"K. Chatterjee, E. Goharshady, P. Novotný, and D. Zikelic, “Equivalence and similarity refutation for probabilistic programs,” <i>Proceedings of the ACM on Programming Languages</i>, vol. 8. Association for Computing Machinery, 2024.","mla":"Chatterjee, Krishnendu, et al. “Equivalence and Similarity Refutation for Probabilistic Programs.” <i>Proceedings of the ACM on Programming Languages</i>, vol. 8, 232, Association for Computing Machinery, 2024, doi:<a href=\"https://doi.org/10.1145/3656462\">10.1145/3656462</a>.","ama":"Chatterjee K, Goharshady E, Novotný P, Zikelic D. Equivalence and similarity refutation for probabilistic programs. <i>Proceedings of the ACM on Programming Languages</i>. 2024;8. doi:<a href=\"https://doi.org/10.1145/3656462\">10.1145/3656462</a>","apa":"Chatterjee, K., Goharshady, E., Novotný, P., &#38; Zikelic, D. (2024). Equivalence and similarity refutation for probabilistic programs. <i>Proceedings of the ACM on Programming Languages</i>. Association for Computing Machinery. <a href=\"https://doi.org/10.1145/3656462\">https://doi.org/10.1145/3656462</a>"},"article_processing_charge":"Yes (via OA deal)","publication_identifier":{"eissn":["2475-1421"]},"type":"journal_article","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png"},"oa_version":"Published Version","has_accepted_license":"1","date_updated":"2025-04-14T07:52:47Z","abstract":[{"text":"We consider the problems of statically refuting equivalence and similarity of output distributions defined by a pair of probabilistic programs. Equivalence and similarity are two fundamental relational properties of probabilistic programs that are essential for their correctness both in implementation and in compilation. In this work, we present a new method for static equivalence and similarity refutation. Our method refutes equivalence and similarity by computing a function over program outputs whose expected value with respect to the output distributions of two programs is different. The function is computed simultaneously with an upper expectation supermartingale and a lower expectation submartingale for the two programs, which we show to together provide a formal certificate for refuting equivalence and similarity. To the best of our knowledge, our method is the first approach to relational program analysis to offer the combination of the following desirable features: (1) it is fully automated, (2) it is applicable to infinite-state probabilistic programs, and (3) it provides formal guarantees on the correctness of its results. We implement a prototype of our method and our experiments demonstrate the effectiveness of our method to refute equivalence and similarity for a number of examples collected from the literature.","lang":"eng"}],"volume":8,"month":"06","article_type":"original"},{"pmid":1,"quality_controlled":"1","publication":"Nature","file":[{"file_size":15704819,"date_created":"2024-07-22T06:16:11Z","access_level":"open_access","file_id":"17286","content_type":"application/pdf","file_name":"2024_Nature_Gaertner.pdf","creator":"dernst","relation":"main_file","success":1,"checksum":"aa004afc72d2489f0fb0fcbc9919fbbd","date_updated":"2024-07-22T06:16:11Z"}],"publication_status":"published","page":"645-653","author":[{"id":"397A88EE-F248-11E8-B48F-1D18A9856A87","first_name":"Florian R","orcid":"0000-0001-6120-3723","last_name":"Gärtner","full_name":"Gärtner, Florian R"},{"first_name":"Hellen","last_name":"Ishikawa-Ankerhold","full_name":"Ishikawa-Ankerhold, Hellen"},{"last_name":"Stutte","full_name":"Stutte, Susanne","first_name":"Susanne"},{"first_name":"Wenwen","full_name":"Fu, Wenwen","last_name":"Fu"},{"first_name":"Jutta","last_name":"Weitz","full_name":"Weitz, Jutta"},{"full_name":"Dueck, Anne","last_name":"Dueck","first_name":"Anne"},{"first_name":"Bhavishya","last_name":"Nelakuditi","full_name":"Nelakuditi, Bhavishya"},{"first_name":"Valeria","full_name":"Fumagalli, Valeria","last_name":"Fumagalli"},{"first_name":"Dominic","last_name":"Van Den Heuvel","full_name":"Van Den Heuvel, Dominic"},{"last_name":"Belz","full_name":"Belz, Larissa","first_name":"Larissa"},{"first_name":"Gulnoza","full_name":"Sobirova, Gulnoza","last_name":"Sobirova"},{"full_name":"Zhang, Zhe","last_name":"Zhang","first_name":"Zhe"},{"first_name":"Anna","last_name":"Titova","full_name":"Titova, Anna"},{"first_name":"Alejandro Martinez","full_name":"Navarro, Alejandro Martinez","last_name":"Navarro"},{"first_name":"Kami","full_name":"Pekayvaz, Kami","last_name":"Pekayvaz"},{"full_name":"Lorenz, Michael","last_name":"Lorenz","first_name":"Michael"},{"first_name":"Louisa","last_name":"Von Baumgarten","full_name":"Von Baumgarten, Louisa"},{"first_name":"Jan","last_name":"Kranich","full_name":"Kranich, Jan"},{"first_name":"Tobias","full_name":"Straub, Tobias","last_name":"Straub"},{"full_name":"Popper, Bastian","last_name":"Popper","first_name":"Bastian"},{"id":"39C5A68A-F248-11E8-B48F-1D18A9856A87","first_name":"Vanessa","orcid":"0000-0002-9438-4783","last_name":"Zheden","full_name":"Zheden, Vanessa"},{"full_name":"Kaufmann, Walter","last_name":"Kaufmann","orcid":"0000-0001-9735-5315","first_name":"Walter","id":"3F99E422-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Chenglong","full_name":"Guo, Chenglong","last_name":"Guo"},{"first_name":"Guido","full_name":"Piontek, Guido","last_name":"Piontek"},{"first_name":"Saskia","full_name":"Von Stillfried, Saskia","last_name":"Von Stillfried"},{"full_name":"Boor, Peter","last_name":"Boor","first_name":"Peter"},{"first_name":"Marco","last_name":"Colonna","full_name":"Colonna, Marco"},{"first_name":"Sebastian","last_name":"Clauß","full_name":"Clauß, Sebastian"},{"full_name":"Schulz, Christian","last_name":"Schulz","first_name":"Christian"},{"first_name":"Thomas","full_name":"Brocker, Thomas","last_name":"Brocker"},{"last_name":"Walzog","full_name":"Walzog, Barbara","first_name":"Barbara"},{"first_name":"Christoph","last_name":"Scheiermann","full_name":"Scheiermann, Christoph"},{"last_name":"Aird","full_name":"Aird, William C.","first_name":"William C."},{"last_name":"Nerlov","full_name":"Nerlov, Claus","first_name":"Claus"},{"full_name":"Stark, Konstantin","last_name":"Stark","first_name":"Konstantin"},{"full_name":"Petzold, Tobias","last_name":"Petzold","first_name":"Tobias"},{"first_name":"Stefan","full_name":"Engelhardt, Stefan","last_name":"Engelhardt"},{"first_name":"Michael K","id":"41E9FBEA-F248-11E8-B48F-1D18A9856A87","full_name":"Sixt, Michael K","last_name":"Sixt","orcid":"0000-0002-6620-9179"},{"orcid":"0000-0001-9843-3522","last_name":"Hauschild","full_name":"Hauschild, Robert","id":"4E01D6B4-F248-11E8-B48F-1D18A9856A87","first_name":"Robert"},{"full_name":"Rudelius, Martina","last_name":"Rudelius","first_name":"Martina"},{"first_name":"Robert A.J.","last_name":"Oostendorp","full_name":"Oostendorp, Robert A.J."},{"last_name":"Iannacone","full_name":"Iannacone, Matteo","first_name":"Matteo"},{"last_name":"Heinig","full_name":"Heinig, Matthias","first_name":"Matthias"},{"full_name":"Massberg, Steffen","last_name":"Massberg","first_name":"Steffen"}],"date_published":"2024-07-18T00:00:00Z","title":"Plasmacytoid dendritic cells control homeostasis of megakaryopoiesis","isi":1,"oa_version":"Published Version","has_accepted_license":"1","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png"},"related_material":{"link":[{"relation":"software","url":"https://github.com/heiniglab/gaertner_megakaryocytes"}]},"article_type":"original","date_updated":"2025-09-08T08:14:25Z","volume":631,"month":"07","abstract":[{"text":"Platelet homeostasis is essential for vascular integrity and immune defence1,2. Although the process of platelet formation by fragmenting megakaryocytes (MKs; thrombopoiesis) has been extensively studied, the cellular and molecular mechanisms required to constantly replenish the pool of MKs by their progenitor cells (megakaryopoiesis) remains unclear3,4. Here we use intravital imaging to track the cellular dynamics of megakaryopoiesis over days. We identify plasmacytoid dendritic cells (pDCs) as homeostatic sensors that monitor the bone marrow for apoptotic MKs and deliver IFNα to the MK niche triggering local on-demand proliferation and maturation of MK progenitors. This pDC-dependent feedback loop is crucial for MK and platelet homeostasis at steady state and under stress. pDCs are best known for their ability to function as vigilant detectors of viral infection5. We show that virus-induced activation of pDCs interferes with their function as homeostatic sensors of megakaryopoiesis. Consequently, activation of pDCs by SARS-CoV-2 leads to excessive megakaryopoiesis. Together, we identify a pDC-dependent homeostatic circuit that involves innate immune sensing and demand-adapted release of inflammatory mediators to maintain homeostasis of the megakaryocytic lineage.","lang":"eng"}],"status":"public","_id":"17284","publication_identifier":{"issn":["0028-0836"],"eissn":["1476-4687"]},"type":"journal_article","citation":{"ama":"Gärtner FR, Ishikawa-Ankerhold H, Stutte S, et al. Plasmacytoid dendritic cells control homeostasis of megakaryopoiesis. <i>Nature</i>. 2024;631:645-653. doi:<a href=\"https://doi.org/10.1038/s41586-024-07671-y\">10.1038/s41586-024-07671-y</a>","apa":"Gärtner, F. R., Ishikawa-Ankerhold, H., Stutte, S., Fu, W., Weitz, J., Dueck, A., … Massberg, S. (2024). Plasmacytoid dendritic cells control homeostasis of megakaryopoiesis. <i>Nature</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41586-024-07671-y\">https://doi.org/10.1038/s41586-024-07671-y</a>","ista":"Gärtner FR, Ishikawa-Ankerhold H, Stutte S, Fu W, Weitz J, Dueck A, Nelakuditi B, Fumagalli V, Van Den Heuvel D, Belz L, Sobirova G, Zhang Z, Titova A, Navarro AM, Pekayvaz K, Lorenz M, Von Baumgarten L, Kranich J, Straub T, Popper B, Zheden V, Kaufmann W, Guo C, Piontek G, Von Stillfried S, Boor P, Colonna M, Clauß S, Schulz C, Brocker T, Walzog B, Scheiermann C, Aird WC, Nerlov C, Stark K, Petzold T, Engelhardt S, Sixt MK, Hauschild R, Rudelius M, Oostendorp RAJ, Iannacone M, Heinig M, Massberg S. 2024. Plasmacytoid dendritic cells control homeostasis of megakaryopoiesis. Nature. 631, 645–653.","short":"F.R. Gärtner, H. Ishikawa-Ankerhold, S. Stutte, W. Fu, J. Weitz, A. Dueck, B. Nelakuditi, V. Fumagalli, D. Van Den Heuvel, L. Belz, G. Sobirova, Z. Zhang, A. Titova, A.M. Navarro, K. Pekayvaz, M. Lorenz, L. Von Baumgarten, J. Kranich, T. Straub, B. Popper, V. Zheden, W. Kaufmann, C. Guo, G. Piontek, S. Von Stillfried, P. Boor, M. Colonna, S. Clauß, C. Schulz, T. Brocker, B. Walzog, C. Scheiermann, W.C. Aird, C. Nerlov, K. Stark, T. Petzold, S. Engelhardt, M.K. Sixt, R. Hauschild, M. Rudelius, R.A.J. Oostendorp, M. Iannacone, M. Heinig, S. Massberg, Nature 631 (2024) 645–653.","mla":"Gärtner, Florian R., et al. “Plasmacytoid Dendritic Cells Control Homeostasis of Megakaryopoiesis.” <i>Nature</i>, vol. 631, Springer Nature, 2024, pp. 645–53, doi:<a href=\"https://doi.org/10.1038/s41586-024-07671-y\">10.1038/s41586-024-07671-y</a>.","chicago":"Gärtner, Florian R, Hellen Ishikawa-Ankerhold, Susanne Stutte, Wenwen Fu, Jutta Weitz, Anne Dueck, Bhavishya Nelakuditi, et al. “Plasmacytoid Dendritic Cells Control Homeostasis of Megakaryopoiesis.” <i>Nature</i>. Springer Nature, 2024. <a href=\"https://doi.org/10.1038/s41586-024-07671-y\">https://doi.org/10.1038/s41586-024-07671-y</a>.","ieee":"F. R. Gärtner <i>et al.</i>, “Plasmacytoid dendritic cells control homeostasis of megakaryopoiesis,” <i>Nature</i>, vol. 631. Springer Nature, pp. 645–653, 2024."},"article_processing_charge":"Yes (in subscription journal)","ec_funded":1,"project":[{"name":"Mechanical Adaptation of Lamellipodial Actin Networks in Migrating Cells","_id":"260AA4E2-B435-11E9-9278-68D0E5697425","grant_number":"747687","call_identifier":"H2020"}],"year":"2024","department":[{"_id":"EM-Fac"},{"_id":"MiSi"},{"_id":"Bio"}],"intvolume":"       631","external_id":{"pmid":["38987596"],"isi":["001281636500020"]},"language":[{"iso":"eng"}],"corr_author":"1","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","date_created":"2024-07-21T22:01:02Z","file_date_updated":"2024-07-22T06:16:11Z","oa":1,"acknowledgement":"We thank S. Helmer, N. Blount, E. Raatz and Z. Sisic for technical assistance. This work was funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) SFB 1123 (S.M. project B06); SFB 914 (S.M. projects B02 and Z01, H.I.-A. project Z01, S.S. project A06, K.S. project B02, C. Schulz project A10, B.W. project A02, C. Scheiermann project B09); SFB 1054 (T.B. project B03); FOR2033 (F.G., R.A.J.O., S.M.); Individual research grant project ID: 514478744 (F.G.); Heisenberg Programme project ID: 514477451 (F.G.); the DZHK (German Center for Cardiovascular Research) (MHA 1.4VD (S.M.), Postdoc Start-up Grant, 81×3600213 (F.G.)); and LMUexcellence NFF (F.G.). W.F. received funding from China Scholarship Council (CSC, no. 201306270012). P.B. is supported by the German Research Foundation (DFG, project IDs 322900939, 432698239 and 445703531), European Research Council (ERC Consolidator grant no. 101001791) and the Federal Ministry of Education and Research (BMBF, STOP-FSGS-01GM2202C and NATON within the framework of the Network of University Medicine, no. 01KX2121). S.v.S. is supported by the START-Program of the Faculty of Medicine of the RWTH Aachen University (AZ 125/17). A.D. and S.E. are supported by the German Research Foundation (SFB TRR 267); S.E. by the BMBF in the framework of the Cluster4future program (CNATM—Cluster for Nucleic Acid Therapeutics Munich). This project has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (grant agreement no. 833440 to S.M.). F.G. received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement no. 747687. The project is funded by the European Union (ERC, MEKanics, 101078110). Views and opinions expressed are those of the author(s) only and do not necessarily reflect those of the European Union or the European Research Council Executive Agency. Neither the European Union nor the granting authority can be held responsible for them.","ddc":["570"],"scopus_import":"1","day":"18","doi":"10.1038/s41586-024-07671-y","publisher":"Springer Nature"},{"article_type":"original","date_updated":"2025-09-08T08:15:08Z","abstract":[{"lang":"eng","text":"Winter plants rely on vernalization, a crucial process for adapting to cold conditions and ensuring successful reproduction. However, understanding the role of histone modifications in guiding the vernalization process in winter wheat remains limited. In this study, we investigated the transcriptome and chromatin dynamics in the shoot apex throughout the life cycle of winter wheat in the field. Two core histone modifications, H3K27me3 and H3K36me3, exhibited opposite patterns on the key vernalization gene VERNALIZATION1 (VRN1), correlating with its induction during cold exposure. Moreover, the H3K36me3 level remained high at VRN1 after cold exposure, which may maintain its active state. Mutations in FERTILIZATION-INDEPENDENT ENDOSPERM (TaFIE) and SET DOMAIN GROUP 8/EARLY FLOWERING IN SHORT DAYS (TaSDG8/TaEFS), components of the writer complex for H3K27me3 and H3K36me3, respectively, affected flowering time. Intriguingly, VRN1 lost its high expression after the cold exposure memory in the absence of H3K36me3. During embryo development, VRN1 was silenced with the removal of active histone modifications in both winter and spring wheat, with selective restoration of H3K27me3 in winter wheat. The mutant of Tafie-cr-87, a component of H3K27me3 “writer” complex, did not influence the silence of VRN1 during embryo development, but rather attenuated the cold exposure requirement of winter wheat. Integrating gene expression with H3K27me3 and H3K36me3 patterns identified potential regulators of flowering. This study unveils distinct roles of H3K27me3 and H3K36me3 in controlling vernalization response, maintenance, and resetting in winter wheat."}],"month":"10","volume":67,"oa_version":"Preprint","isi":1,"publication_identifier":{"issn":["1674-7305"],"eissn":["1869-1889"]},"type":"journal_article","citation":{"apa":"Liu, X., Deng, M., Shi, B., Zhu, K., Chen, J., Xu, S., … Xiao, J. (2024). Distinct roles of H3K27me3 and H3K36me3 in vernalization response, maintenance, and resetting in winter wheat. <i>Science China Life Sciences</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s11427-024-2664-0\">https://doi.org/10.1007/s11427-024-2664-0</a>","ama":"Liu X, Deng M, Shi B, et al. Distinct roles of H3K27me3 and H3K36me3 in vernalization response, maintenance, and resetting in winter wheat. <i>Science China Life Sciences</i>. 2024;67:2251-2266. doi:<a href=\"https://doi.org/10.1007/s11427-024-2664-0\">10.1007/s11427-024-2664-0</a>","mla":"Liu, Xuemei, et al. “Distinct Roles of H3K27me3 and H3K36me3 in Vernalization Response, Maintenance, and Resetting in Winter Wheat.” <i>Science China Life Sciences</i>, vol. 67, Springer Nature, 2024, pp. 2251–66, doi:<a href=\"https://doi.org/10.1007/s11427-024-2664-0\">10.1007/s11427-024-2664-0</a>.","chicago":"Liu, Xuemei, Min Deng, Bingxin Shi, Kehui Zhu, Jinchao Chen, Shujuan Xu, Xiaomin Bie, Xiansheng Zhang, Xuelei Lin, and Jun Xiao. “Distinct Roles of H3K27me3 and H3K36me3 in Vernalization Response, Maintenance, and Resetting in Winter Wheat.” <i>Science China Life Sciences</i>. Springer Nature, 2024. <a href=\"https://doi.org/10.1007/s11427-024-2664-0\">https://doi.org/10.1007/s11427-024-2664-0</a>.","ieee":"X. Liu <i>et al.</i>, “Distinct roles of H3K27me3 and H3K36me3 in vernalization response, maintenance, and resetting in winter wheat,” <i>Science China Life Sciences</i>, vol. 67. Springer Nature, pp. 2251–2266, 2024.","ista":"Liu X, Deng M, Shi B, Zhu K, Chen J, Xu S, Bie X, Zhang X, Lin X, Xiao J. 2024. Distinct roles of H3K27me3 and H3K36me3 in vernalization response, maintenance, and resetting in winter wheat. Science China Life Sciences. 67, 2251–2266.","short":"X. Liu, M. Deng, B. Shi, K. Zhu, J. Chen, S. Xu, X. Bie, X. Zhang, X. Lin, J. Xiao, Science China Life Sciences 67 (2024) 2251–2266."},"article_processing_charge":"No","_id":"17285","status":"public","page":"2251-2266","publication_status":"published","pmid":1,"quality_controlled":"1","publication":"Science China Life Sciences","title":"Distinct roles of H3K27me3 and H3K36me3 in vernalization response, maintenance, and resetting in winter wheat","author":[{"first_name":"Xuemei","last_name":"Liu","full_name":"Liu, Xuemei"},{"full_name":"Deng, Min","last_name":"Deng","first_name":"Min"},{"full_name":"Shi, Bingxin","last_name":"Shi","first_name":"Bingxin"},{"first_name":"Kehui","full_name":"Zhu, Kehui","last_name":"Zhu"},{"first_name":"Jinchao","full_name":"Chen, Jinchao","last_name":"Chen"},{"first_name":"Shujuan","id":"9724dd9d-f591-11ee-bd51-e97ed0652286","full_name":"Xu, Shujuan","last_name":"Xu"},{"first_name":"Xiaomin","full_name":"Bie, Xiaomin","last_name":"Bie"},{"full_name":"Zhang, Xiansheng","last_name":"Zhang","first_name":"Xiansheng"},{"last_name":"Lin","full_name":"Lin, Xuelei","first_name":"Xuelei"},{"first_name":"Jun","last_name":"Xiao","full_name":"Xiao, Jun"}],"date_published":"2024-10-01T00:00:00Z","acknowledgement":"We thank Prof. Kang Chong from Institute of Botany, the Chinese Academy of Science for valuable comments, Dr. Haoran Li for the help with western blot of H3K36me3 in Tasdg8-cr lines. This research was supported by National Natural Science Foundation (31970529), Beijing Natural Science Foundation Outstanding Youth Project (JQ23026), National Key Research and Development Program of China (2021YFD1201500), and the Major Basic Research Program of Shandong Natural Science Foundation (ZR2019ZD15).","scopus_import":"1","doi":"10.1007/s11427-024-2664-0","publisher":"Springer Nature","day":"01","OA_type":"green","department":[{"_id":"XiFe"}],"year":"2024","intvolume":"        67","main_file_link":[{"url":"https://doi.org/10.1101/2023.12.19.572364","open_access":"1"}],"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","date_created":"2024-07-21T22:01:02Z","oa":1,"external_id":{"pmid":["38987431"],"isi":["001268807700002"]},"language":[{"iso":"eng"}],"OA_place":"repository"},{"intvolume":"       364","year":"2024","department":[{"_id":"PaSc"}],"language":[{"iso":"eng"}],"external_id":{"pmid":["38901173"],"isi":["001259302800001"]},"OA_place":"publisher","corr_author":"1","date_created":"2024-07-22T07:44:10Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","oa":1,"file_date_updated":"2024-07-23T06:23:51Z","ddc":["570"],"acknowledgement":"This research was supported by the French Agence Nationale de la Recherche (\r\nANR-16-CE11-0030-12, TransPepNMR). This work used the platforms of the Grenoble Instruct-ERIC center (ISBG; UAR 3518 CNRS-CEA-UGA-EMBL) within the Grenoble Partnership for Structural Biology (PSB), supported by FRISBI, France (ANR-10-INBS-0005-02\r\n) and GRAL, financed within the University Grenoble Alpes graduate school (Ecoles Universitaires de Recherche), CBH-EUR-GS (ANR-17-EURE-0003). Financial support from the IR INFRANALYTICS FR2054 for conducting the research and intramural funding by the Institute of Science and Technology Austria (ISTA) are gratefully acknowledged.","scopus_import":"1","OA_type":"hybrid","day":"01","doi":"10.1016/j.jmr.2024.107708","publisher":"Elsevier","quality_controlled":"1","pmid":1,"file":[{"file_size":2236665,"date_created":"2024-07-23T06:23:51Z","access_level":"open_access","content_type":"application/pdf","file_id":"17316","file_name":"2024_JourMagneticResonance_Vallet.pdf","success":1,"checksum":"4b59f4f0c287ecbafd808da1212ced38","creator":"dernst","relation":"main_file","date_updated":"2024-07-23T06:23:51Z"}],"publication":"Journal of Magnetic Resonance","publication_status":"published","date_published":"2024-07-01T00:00:00Z","article_number":"107708","author":[{"full_name":"Vallet, Alicia","last_name":"Vallet","first_name":"Alicia"},{"last_name":"Ayala","full_name":"Ayala, Isabel","first_name":"Isabel"},{"first_name":"Barbara","last_name":"Perrone","full_name":"Perrone, Barbara"},{"first_name":"Alia","full_name":"Hassan, Alia","last_name":"Hassan"},{"last_name":"Simorre","full_name":"Simorre, Jean-Pierre","first_name":"Jean-Pierre"},{"last_name":"Bougault","full_name":"Bougault, Catherine","first_name":"Catherine"},{"orcid":"0000-0002-9350-7606","last_name":"Schanda","full_name":"Schanda, Paul","id":"7B541462-FAF6-11E9-A490-E8DFE5697425","first_name":"Paul"}],"title":"MAS NMR experiments of corynebacterial cell walls: Complementary 1H- and CPMAS CryoProbe-enhanced 13C-detected experiments","has_accepted_license":"1","isi":1,"oa_version":"Published Version","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png"},"article_type":"original","related_material":{"record":[{"relation":"research_data","status":"public","id":"17042"}]},"volume":364,"abstract":[{"text":"Bacterial cell walls are gigadalton-large cross-linked polymers with a wide range of motional amplitudes, including rather rigid as well as highly flexible parts. Magic-angle spinning NMR is a powerful method to obtain atomic-level information about intact cell walls. Here we investigate sensitivity and information content of different homonuclear 13Csingle bond13C and heteronuclear 1Hsingle bond15N, 1Hsingle bond13C and 15Nsingle bond13C correlation experiments. We demonstrate that a CPMAS CryoProbe yields ca. 8-fold increased signal-to-noise over a room-temperature probe, or a ca. 3–4-fold larger per-mass sensitivity. The increased sensitivity allowed to obtain high-resolution spectra even on intact bacteria. Moreover, we compare resolution and sensitivity of 1H MAS experiments obtained at 100 kHz vs. 55 kHz. Our study provides useful hints for choosing experiments to extract atomic-level details on cell-wall samples.","lang":"eng"}],"month":"07","date_updated":"2025-09-09T12:01:41Z","status":"public","_id":"17291","type":"journal_article","publication_identifier":{"issn":["1090-7807"]},"article_processing_charge":"Yes (via OA deal)","citation":{"ama":"Vallet A, Ayala I, Perrone B, et al. MAS NMR experiments of corynebacterial cell walls: Complementary 1H- and CPMAS CryoProbe-enhanced 13C-detected experiments. <i>Journal of Magnetic Resonance</i>. 2024;364. doi:<a href=\"https://doi.org/10.1016/j.jmr.2024.107708\">10.1016/j.jmr.2024.107708</a>","apa":"Vallet, A., Ayala, I., Perrone, B., Hassan, A., Simorre, J.-P., Bougault, C., &#38; Schanda, P. (2024). MAS NMR experiments of corynebacterial cell walls: Complementary 1H- and CPMAS CryoProbe-enhanced 13C-detected experiments. <i>Journal of Magnetic Resonance</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.jmr.2024.107708\">https://doi.org/10.1016/j.jmr.2024.107708</a>","ista":"Vallet A, Ayala I, Perrone B, Hassan A, Simorre J-P, Bougault C, Schanda P. 2024. MAS NMR experiments of corynebacterial cell walls: Complementary 1H- and CPMAS CryoProbe-enhanced 13C-detected experiments. Journal of Magnetic Resonance. 364, 107708.","short":"A. Vallet, I. Ayala, B. Perrone, A. Hassan, J.-P. Simorre, C. Bougault, P. Schanda, Journal of Magnetic Resonance 364 (2024).","mla":"Vallet, Alicia, et al. “MAS NMR Experiments of Corynebacterial Cell Walls: Complementary 1H- and CPMAS CryoProbe-Enhanced 13C-Detected Experiments.” <i>Journal of Magnetic Resonance</i>, vol. 364, 107708, Elsevier, 2024, doi:<a href=\"https://doi.org/10.1016/j.jmr.2024.107708\">10.1016/j.jmr.2024.107708</a>.","chicago":"Vallet, Alicia, Isabel Ayala, Barbara Perrone, Alia Hassan, Jean-Pierre Simorre, Catherine Bougault, and Paul Schanda. “MAS NMR Experiments of Corynebacterial Cell Walls: Complementary 1H- and CPMAS CryoProbe-Enhanced 13C-Detected Experiments.” <i>Journal of Magnetic Resonance</i>. Elsevier, 2024. <a href=\"https://doi.org/10.1016/j.jmr.2024.107708\">https://doi.org/10.1016/j.jmr.2024.107708</a>.","ieee":"A. Vallet <i>et al.</i>, “MAS NMR experiments of corynebacterial cell walls: Complementary 1H- and CPMAS CryoProbe-enhanced 13C-detected experiments,” <i>Journal of Magnetic Resonance</i>, vol. 364. Elsevier, 2024."}},{"publication":"Nature Water","quality_controlled":"1","publication_status":"published","page":"624-637","author":[{"last_name":"van Tiel","full_name":"van Tiel, Marit","first_name":"Marit"},{"full_name":"Aubry-Wake, Caroline","last_name":"Aubry-Wake","first_name":"Caroline"},{"first_name":"Lauren","last_name":"Somers","full_name":"Somers, Lauren"},{"full_name":"Andermann, Christoff","last_name":"Andermann","first_name":"Christoff"},{"full_name":"Avanzi, Francesco","last_name":"Avanzi","first_name":"Francesco"},{"first_name":"Michel","last_name":"Baraer","full_name":"Baraer, Michel"},{"first_name":"Gabriele","last_name":"Chiogna","full_name":"Chiogna, Gabriele"},{"full_name":"Daigre, Clémence","last_name":"Daigre","first_name":"Clémence"},{"first_name":"Soumik","full_name":"Das, Soumik","last_name":"Das"},{"full_name":"Drenkhan, Fabian","last_name":"Drenkhan","first_name":"Fabian"},{"full_name":"Farinotti, Daniel","last_name":"Farinotti","first_name":"Daniel"},{"last_name":"Fyffe","full_name":"Fyffe, Catriona Louise","id":"001b0422-8d15-11ed-bc51-cab6c037a228","first_name":"Catriona Louise"},{"first_name":"Inge","last_name":"de Graaf","full_name":"de Graaf, Inge"},{"last_name":"Hanus","full_name":"Hanus, Sarah","first_name":"Sarah"},{"first_name":"Walter","last_name":"Immerzeel","full_name":"Immerzeel, Walter"},{"first_name":"Franziska","last_name":"Koch","full_name":"Koch, Franziska"},{"first_name":"Jeffrey M.","full_name":"McKenzie, Jeffrey M.","last_name":"McKenzie"},{"first_name":"Tom","last_name":"Müller","full_name":"Müller, Tom"},{"first_name":"Andrea L.","full_name":"Popp, Andrea L.","last_name":"Popp"},{"full_name":"Saidaliyeva, Zarina","last_name":"Saidaliyeva","first_name":"Zarina"},{"last_name":"Schaefli","full_name":"Schaefli, Bettina","first_name":"Bettina"},{"full_name":"Schilling, Oliver S.","last_name":"Schilling","first_name":"Oliver S."},{"full_name":"Teagai, Kapiolani","last_name":"Teagai","first_name":"Kapiolani"},{"last_name":"Thornton","full_name":"Thornton, James M.","first_name":"James M."},{"first_name":"Vadim","last_name":"Yapiyev","full_name":"Yapiyev, Vadim"}],"date_published":"2024-07-19T00:00:00Z","title":"Cryosphere–groundwater connectivity is a missing link in the mountain water cycle","isi":1,"oa_version":"Submitted Version","date_updated":"2025-12-02T13:42:28Z","month":"07","volume":2,"abstract":[{"text":"The mountain cryosphere and groundwater play pivotal roles in shaping the hydrological cycle, yet their connectivity remains incompletely understood. Current knowledge on meltwater recharge and consequent groundwater discharge processes is better developed for snow–groundwater connectivity than for glacier–groundwater connectivity. Estimates of meltwater recharge vary considerably, which is probably a function of not only inherent catchment characteristics but also of the different spatio-temporal scales involved and the uncertainties in the methods used. This hinders a comprehensive understanding of the mountain water cycle. As glaciers retreat, permafrost thaws and snowpack diminishes, the relative importance of mountain groundwater is expected to increase. However, shifting and declining recharge from the cryosphere may decrease absolute groundwater amounts and fluxes with as-yet unknown effects on catchment-scale hydrological processes. We therefore stress the need to better quantify mountain cryosphere–groundwater connectivity to predict climate change impacts on mountain water supply and to support sustainable water resource management of downstream socio-ecological systems.","lang":"eng"}],"article_type":"original","_id":"17302","status":"public","citation":{"apa":"van Tiel, M., Aubry-Wake, C., Somers, L., Andermann, C., Avanzi, F., Baraer, M., … Yapiyev, V. (2024). Cryosphere–groundwater connectivity is a missing link in the mountain water cycle. <i>Nature Water</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s44221-024-00277-8\">https://doi.org/10.1038/s44221-024-00277-8</a>","ama":"van Tiel M, Aubry-Wake C, Somers L, et al. Cryosphere–groundwater connectivity is a missing link in the mountain water cycle. <i>Nature Water</i>. 2024;2:624-637. doi:<a href=\"https://doi.org/10.1038/s44221-024-00277-8\">10.1038/s44221-024-00277-8</a>","mla":"van Tiel, Marit, et al. “Cryosphere–Groundwater Connectivity Is a Missing Link in the Mountain Water Cycle.” <i>Nature Water</i>, vol. 2, Springer Nature, 2024, pp. 624–37, doi:<a href=\"https://doi.org/10.1038/s44221-024-00277-8\">10.1038/s44221-024-00277-8</a>.","chicago":"Tiel, Marit van, Caroline Aubry-Wake, Lauren Somers, Christoff Andermann, Francesco Avanzi, Michel Baraer, Gabriele Chiogna, et al. “Cryosphere–Groundwater Connectivity Is a Missing Link in the Mountain Water Cycle.” <i>Nature Water</i>. Springer Nature, 2024. <a href=\"https://doi.org/10.1038/s44221-024-00277-8\">https://doi.org/10.1038/s44221-024-00277-8</a>.","ieee":"M. van Tiel <i>et al.</i>, “Cryosphere–groundwater connectivity is a missing link in the mountain water cycle,” <i>Nature Water</i>, vol. 2. Springer Nature, pp. 624–637, 2024.","ista":"van Tiel M, Aubry-Wake C, Somers L, Andermann C, Avanzi F, Baraer M, Chiogna G, Daigre C, Das S, Drenkhan F, Farinotti D, Fyffe CL, de Graaf I, Hanus S, Immerzeel W, Koch F, McKenzie JM, Müller T, Popp AL, Saidaliyeva Z, Schaefli B, Schilling OS, Teagai K, Thornton JM, Yapiyev V. 2024. Cryosphere–groundwater connectivity is a missing link in the mountain water cycle. Nature Water. 2, 624–637.","short":"M. van Tiel, C. Aubry-Wake, L. Somers, C. Andermann, F. Avanzi, M. Baraer, G. Chiogna, C. Daigre, S. Das, F. Drenkhan, D. Farinotti, C.L. Fyffe, I. de Graaf, S. Hanus, W. Immerzeel, F. Koch, J.M. McKenzie, T. Müller, A.L. Popp, Z. Saidaliyeva, B. Schaefli, O.S. Schilling, K. Teagai, J.M. Thornton, V. Yapiyev, Nature Water 2 (2024) 624–637."},"article_processing_charge":"No","publication_identifier":{"issn":["2731-6084"]},"type":"journal_article","main_file_link":[{"open_access":"1","url":"https://insu.hal.science/insu-04674297"}],"department":[{"_id":"FrPe"}],"intvolume":"         2","year":"2024","OA_place":"repository","external_id":{"isi":["001390137500016"]},"language":[{"iso":"eng"}],"oa":1,"date_created":"2024-07-22T09:46:52Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","scopus_import":"1","acknowledgement":"We acknowledge the Mountain Research Initiative (MRI) for sponsoring the workshop ‘Cryosphere-groundwater Interactions: A Missing Link in Mountain Water Research’ via their funding from the Swiss Academy of Sciences (SCNAT) under project no. FNW0004 004-2019-00. M.v.T. was supported by a Walter Benjamin fellowship from the German Research Foundation (DFG) under project no. 510684314. C.A.-W. was supported by the Banting Postdoctoral Fellowships programme, administered by the government of Canada. G.C. acknowledges the support of the DFG research unit (FOR2793/2) investigating the ‘Sensitivity of High Alpine Geosystems to Climate Change since 1850’ (SEHAG) under grant CH981/3-2. F.D. acknowledges funding from the Dirección de Fomento de la Investigación at PUCP. I.d.G. acknowledges funding from the European Research Council (ERC) under grant agreement GROW-101041110. V.Y. was supported by Nazarbayev University under CRP research grant no. 021220CRP2122. We thank D. Masovic of VAW, ETH Zurich, for drawing Fig. 1.","day":"19","OA_type":"green","publisher":"Springer Nature","doi":"10.1038/s44221-024-00277-8"},{"scopus_import":"1","acknowledgement":"We would like to thank all members of the Pilizota lab, as well as Calin Guet, Orkun Soyer, Munehiro Asally, Peter Swain, and in particular Matt Scott and Ariel Amir, for their support, comments, and useful discussions. T.P. and W.-C.L. were supported by the Leverhulme Trust, grant RPG-2019-187, and T.P. is supported by EPSRC Fellowship EP/V03264X/1. E.K. was supported by a European Molecular Biology Organization Long-Term Postdoctoral Fellowship, ALTF 44-2021.","ddc":["570"],"day":"01","publisher":"Annual Reviews","doi":"10.1146/annurev-biophys-030822-032215","department":[{"_id":"CaGu"}],"year":"2024","intvolume":"        53","project":[{"grant_number":"ALTF 44-2021","name":"Bacterial cytoplasm glass transition: passive physiological switch or active survival strategy","_id":"eb872896-77a9-11ec-83b8-f59a38ec17f8"}],"language":[{"iso":"eng"}],"external_id":{"isi":["001278237500021"],"pmid":["38382113"]},"oa":1,"file_date_updated":"2024-07-29T10:56:01Z","date_created":"2024-07-28T22:01:09Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png"},"has_accepted_license":"1","isi":1,"oa_version":"Published Version","volume":53,"month":"07","abstract":[{"text":"Bacterial ion fluxes are involved in the generation of energy, transport, and motility. As such, bacterial electrophysiology is fundamentally important for the bacterial life cycle, but it is often neglected and consequently, by and large, not understood. Arguably, the two main reasons for this are the complexity of measuring relevant variables in small cells with a cell envelope that contains the cell wall and the fact that, in a unicellular organism, relevant variables become intertwined in a nontrivial manner. To help give bacterial electrophysiology studies a firm footing, in this review, we go back to basics. We look first at the biophysics of bacterial membrane potential, and then at the approaches and models developed mostly for the study of neurons and eukaryotic mitochondria. We discuss their applicability to bacterial cells. Finally, we connect bacterial membrane potential with other relevant (electro)physiological variables and summarize methods that can be used to both measure and influence bacterial electrophysiology.","lang":"eng"}],"date_updated":"2025-09-08T08:34:43Z","article_type":"original","status":"public","_id":"17325","article_processing_charge":"Yes (in subscription journal)","citation":{"ama":"Lo WC, Krasnopeeva E, Pilizota T. Bacterial Electrophysiology. <i>Annual Review of Biophysics</i>. 2024;53:487-510. doi:<a href=\"https://doi.org/10.1146/annurev-biophys-030822-032215\">10.1146/annurev-biophys-030822-032215</a>","apa":"Lo, W. C., Krasnopeeva, E., &#38; Pilizota, T. (2024). Bacterial Electrophysiology. <i>Annual Review of Biophysics</i>. Annual Reviews. <a href=\"https://doi.org/10.1146/annurev-biophys-030822-032215\">https://doi.org/10.1146/annurev-biophys-030822-032215</a>","ista":"Lo WC, Krasnopeeva E, Pilizota T. 2024. Bacterial Electrophysiology. Annual Review of Biophysics. 53, 487–510.","short":"W.C. Lo, E. Krasnopeeva, T. Pilizota, Annual Review of Biophysics 53 (2024) 487–510.","mla":"Lo, Wei Chang, et al. “Bacterial Electrophysiology.” <i>Annual Review of Biophysics</i>, vol. 53, Annual Reviews, 2024, pp. 487–510, doi:<a href=\"https://doi.org/10.1146/annurev-biophys-030822-032215\">10.1146/annurev-biophys-030822-032215</a>.","chicago":"Lo, Wei Chang, Ekaterina Krasnopeeva, and Teuta Pilizota. “Bacterial Electrophysiology.” <i>Annual Review of Biophysics</i>. Annual Reviews, 2024. <a href=\"https://doi.org/10.1146/annurev-biophys-030822-032215\">https://doi.org/10.1146/annurev-biophys-030822-032215</a>.","ieee":"W. C. Lo, E. Krasnopeeva, and T. Pilizota, “Bacterial Electrophysiology,” <i>Annual Review of Biophysics</i>, vol. 53. Annual Reviews, pp. 487–510, 2024."},"type":"journal_article","publication_identifier":{"issn":["1936-122X"],"eissn":["1936-1238"]},"publication":"Annual Review of Biophysics","file":[{"relation":"main_file","creator":"dernst","checksum":"e0505553b3cee624fa865f0cc5a99ecc","success":1,"date_updated":"2024-07-29T10:56:01Z","date_created":"2024-07-29T10:56:01Z","file_size":1276645,"content_type":"application/pdf","file_id":"17339","access_level":"open_access","file_name":"2024_AnnualReviewBiophys_Lo.pdf"}],"quality_controlled":"1","pmid":1,"publication_status":"published","page":"487-510","date_published":"2024-07-01T00:00:00Z","author":[{"last_name":"Lo","full_name":"Lo, Wei Chang","first_name":"Wei Chang"},{"full_name":"Krasnopeeva, Ekaterina","last_name":"Krasnopeeva","first_name":"Ekaterina","id":"1F1EE44A-BF83-11EA-B3C1-BB9CC619BF3A"},{"full_name":"Pilizota, Teuta","last_name":"Pilizota","first_name":"Teuta"}],"title":"Bacterial Electrophysiology"},{"doi":"10.3847/1538-4357/ad4708","arxiv":1,"publisher":"IOP Publishing","day":"15","DOAJ_listed":"1","acknowledgement":"This project has received funding from the European Union's Horizon 2020 research and innovation program under the Marie Skłodowska-Curie grant agreement No. 101034413. S.\r\nB.D. acknowledges Prof. Jeroen Tromp at Princeton University for supporting a part of this work. S.M.H., S.B., and S.P. acknowledge support from the Department of Atomic Energy,\r\nGovernment of India, under Project Identification No. RTI 4002. The authors would like to thank the reviewer(s) and data editor for their constructive comments and suggestions. The\r\ngeneration of the stellar models was done using the Modules for Experiments in Stellar Astrophysics (MESA Paxton et al. 2011, 2013, 2015, 2018, 2019; we have used MESA version\r\nr22.05.1 for RG and r23.05.1 for SG models, MESA-SDK version x86_64-linux-22.6.1). The eigenfrequencies and eigenfunctions for this model were calculated using the GYRE\r\n(Townsend & Teitler 2013) code. The code to calculate the kernels and the splittings has been written completely in Python 3.8.16.","ddc":["520"],"scopus_import":"1","date_created":"2024-07-28T22:01:09Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","file_date_updated":"2024-07-29T11:02:48Z","oa":1,"external_id":{"arxiv":["2404.17167"],"isi":["001270972500001"]},"language":[{"iso":"eng"}],"ec_funded":1,"project":[{"_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c","name":"IST-BRIDGE: International postdoctoral program","grant_number":"101034413","call_identifier":"H2020"}],"department":[{"_id":"LiBu"}],"year":"2024","intvolume":"       970","publication_identifier":{"issn":["0004-637X"],"eissn":["1538-4357"]},"type":"journal_article","citation":{"mla":"Bhattacharya, Shatanik, et al. “Detectability of Axisymmetric Magnetic Fields from the Core to the Surface of Oscillating Post-Main-Sequence Stars.” <i>Astrophysical Journal</i>, vol. 970, no. 1, 42, IOP Publishing, 2024, doi:<a href=\"https://doi.org/10.3847/1538-4357/ad4708\">10.3847/1538-4357/ad4708</a>.","chicago":"Bhattacharya, Shatanik, Srijan B Das, Lisa Annabelle Bugnet, Subrata Panda, and Shravan M. Hanasoge. “Detectability of Axisymmetric Magnetic Fields from the Core to the Surface of Oscillating Post-Main-Sequence Stars.” <i>Astrophysical Journal</i>. IOP Publishing, 2024. <a href=\"https://doi.org/10.3847/1538-4357/ad4708\">https://doi.org/10.3847/1538-4357/ad4708</a>.","ieee":"S. Bhattacharya, S. B. Das, L. A. Bugnet, S. Panda, and S. M. Hanasoge, “Detectability of axisymmetric magnetic fields from the core to the surface of oscillating post-main-sequence stars,” <i>Astrophysical Journal</i>, vol. 970, no. 1. IOP Publishing, 2024.","ista":"Bhattacharya S, Das SB, Bugnet LA, Panda S, Hanasoge SM. 2024. Detectability of axisymmetric magnetic fields from the core to the surface of oscillating post-main-sequence stars. Astrophysical Journal. 970(1), 42.","short":"S. Bhattacharya, S.B. Das, L.A. Bugnet, S. Panda, S.M. Hanasoge, Astrophysical Journal 970 (2024).","apa":"Bhattacharya, S., Das, S. B., Bugnet, L. A., Panda, S., &#38; Hanasoge, S. M. (2024). Detectability of axisymmetric magnetic fields from the core to the surface of oscillating post-main-sequence stars. <i>Astrophysical Journal</i>. IOP Publishing. <a href=\"https://doi.org/10.3847/1538-4357/ad4708\">https://doi.org/10.3847/1538-4357/ad4708</a>","ama":"Bhattacharya S, Das SB, Bugnet LA, Panda S, Hanasoge SM. Detectability of axisymmetric magnetic fields from the core to the surface of oscillating post-main-sequence stars. <i>Astrophysical Journal</i>. 2024;970(1). doi:<a href=\"https://doi.org/10.3847/1538-4357/ad4708\">10.3847/1538-4357/ad4708</a>"},"article_processing_charge":"Yes","_id":"17326","status":"public","article_type":"original","issue":"1","date_updated":"2025-09-08T08:42:20Z","month":"07","abstract":[{"text":"Magnetic fields in the stellar interiors are key candidates to explain observed core rotation rates inside solar-like stars along their evolution. Recently, asteroseismic estimates of radial magnetic field amplitudes near the hydrogen-burning shell (H-shell) inside about 24 red giants (RGs) have been obtained by measuring frequency splittings from their power spectra. Using general Lorentz-stress (magnetic) kernels, we investigated the potential for detectability of near-surface magnetism in a 1.3 M⊙ star of supersolar metallicity as it evolves from a mid subgiant to a late subgiant into an RG. Based on these sensitivity kernels, we decompose an RG into three zones—deep core, H-shell, and near-surface. The subgiants instead required decomposition into an inner core, an outer core, and a near-surface layer. Additionally, we find that for a low-frequency g-dominated dipolar mode in the presence of a typical stable magnetic field, ∼25% of the frequency shift comes from the H-shell and the remaining from deeper layers. The ratio of the subsurface tangential field to the radial field in the H-burning shell decides if subsurface fields may be potentially detectable. For p-dominated dipole modes close to vmax, this ratio is around two orders of magnitude smaller in subgiant phases than the corresponding RG. Further, with the availability of magnetic kernels, we propose lower limits of field strengths in crucial layers in our stellar model during its evolutionary phases. The theoretical prescription outlined here provides the first formal way to devise inverse problems for stellar magnetism and can be seamlessly employed for slow rotators.","lang":"eng"}],"volume":970,"oa_version":"Published Version","isi":1,"has_accepted_license":"1","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png"},"title":"Detectability of axisymmetric magnetic fields from the core to the surface of oscillating post-main-sequence stars","author":[{"first_name":"Shatanik","last_name":"Bhattacharya","full_name":"Bhattacharya, Shatanik"},{"id":"9ce7c423-dacf-11ed-8942-e09c6cb27149","first_name":"Srijan B","last_name":"Das","orcid":"0000-0003-0896-7972","full_name":"Das, Srijan B"},{"first_name":"Lisa Annabelle","id":"d9edb345-f866-11ec-9b37-d119b5234501","full_name":"Bugnet, Lisa Annabelle","orcid":"0000-0003-0142-4000","last_name":"Bugnet"},{"first_name":"Subrata","last_name":"Panda","full_name":"Panda, Subrata"},{"last_name":"Hanasoge","full_name":"Hanasoge, Shravan M.","first_name":"Shravan M."}],"date_published":"2024-07-15T00:00:00Z","article_number":"42","publication_status":"published","quality_controlled":"1","file":[{"date_updated":"2024-07-29T11:02:48Z","success":1,"checksum":"acb42a87deecbc9228fbbe6a48a37ec6","relation":"main_file","creator":"dernst","access_level":"open_access","content_type":"application/pdf","file_name":"2024_AstrophysicalJourn_Bhattacharya.pdf","file_id":"17340","date_created":"2024-07-29T11:02:48Z","file_size":3912290}],"publication":"Astrophysical Journal"},{"scopus_import":"1","ddc":["000"],"acknowledgement":"This work is partly supported by the European Research Council under Grant No.: ERC2020-AdG 101020093. It is also partially supported by the State Government of Styria, Austria –\r\nDepartment Zukunftsfonds Steiermark.","publisher":"Schloss Dagstuhl - Leibniz-Zentrum für Informatik","doi":"10.4230/LIPIcs.FSCD.2024.2","day":"01","alternative_title":["LIPIcs"],"department":[{"_id":"ToHe"}],"intvolume":"       299","year":"2024","project":[{"grant_number":"101020093","call_identifier":"H2020","name":"Vigilant Algorithmic Monitoring of Software","_id":"62781420-2b32-11ec-9570-8d9b63373d4d"}],"ec_funded":1,"oa":1,"file_date_updated":"2024-07-29T11:15:59Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_created":"2024-07-28T22:01:09Z","corr_author":"1","language":[{"iso":"eng"}],"external_id":{"isi":["001587746100002"]},"month":"07","abstract":[{"lang":"eng","text":"Sequential decision-making in probabilistic environments is a fundamental problem with many applications in AI and economics. In this paper, we present an algorithm for synthesizing sequential decision-making agents that optimize statistical properties such as maximum and average response times. In the general setting of sequential decision-making, the environment is modeled as a random process that generates inputs. The agent responds to each input, aiming to maximize rewards and minimize costs within a specified time horizon. The corresponding synthesis problem is known to be PSPACE-hard. We consider the special case where the input distribution, reward, and cost depend on input-output statistics specified by counter automata. For such problems, this paper presents the first PTIME synthesis algorithms. We introduce the notion of statistical abstraction, which clusters statistically indistinguishable input-output sequences into equivalence classes. This abstraction allows for a dynamic programming algorithm whose complexity grows polynomially with the considered horizon, making the statistical case exponentially more efficient than the general case. We evaluate our algorithm on three different application scenarios of a client-server protocol, where multiple clients compete via bidding to gain access to the service offered by the server. The synthesized policies optimize profit while guaranteeing that none of the server’s clients is disproportionately starved of the service."}],"volume":299,"date_updated":"2025-12-02T13:43:50Z","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png"},"has_accepted_license":"1","oa_version":"Published Version","isi":1,"article_processing_charge":"Yes","citation":{"ama":"Cano F, Henzinger TA, Könighofer B, Kueffner K, Mallik K. Abstraction-based decision making for statistical properties. In: <i>9th International Conference on Formal Structures for Computation and Deduction</i>. Vol 299. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2024. doi:<a href=\"https://doi.org/10.4230/LIPIcs.FSCD.2024.2\">10.4230/LIPIcs.FSCD.2024.2</a>","apa":"Cano, F., Henzinger, T. A., Könighofer, B., Kueffner, K., &#38; Mallik, K. (2024). Abstraction-based decision making for statistical properties. In <i>9th International Conference on Formal Structures for Computation and Deduction</i> (Vol. 299). Tallinn, Estonia: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. <a href=\"https://doi.org/10.4230/LIPIcs.FSCD.2024.2\">https://doi.org/10.4230/LIPIcs.FSCD.2024.2</a>","short":"F. Cano, T.A. Henzinger, B. Könighofer, K. Kueffner, K. Mallik, in:, 9th International Conference on Formal Structures for Computation and Deduction, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2024.","ista":"Cano F, Henzinger TA, Könighofer B, Kueffner K, Mallik K. 2024. Abstraction-based decision making for statistical properties. 9th International Conference on Formal Structures for Computation and Deduction. FSCD: Conference on Formal Structures for Computation and Deduction, LIPIcs, vol. 299, 2.","ieee":"F. Cano, T. A. Henzinger, B. Könighofer, K. Kueffner, and K. Mallik, “Abstraction-based decision making for statistical properties,” in <i>9th International Conference on Formal Structures for Computation and Deduction</i>, Tallinn, Estonia, 2024, vol. 299.","chicago":"Cano, Filip, Thomas A Henzinger, Bettina Könighofer, Konstantin Kueffner, and Kaushik Mallik. “Abstraction-Based Decision Making for Statistical Properties.” In <i>9th International Conference on Formal Structures for Computation and Deduction</i>, Vol. 299. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2024. <a href=\"https://doi.org/10.4230/LIPIcs.FSCD.2024.2\">https://doi.org/10.4230/LIPIcs.FSCD.2024.2</a>.","mla":"Cano, Filip, et al. “Abstraction-Based Decision Making for Statistical Properties.” <i>9th International Conference on Formal Structures for Computation and Deduction</i>, vol. 299, 2, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2024, doi:<a href=\"https://doi.org/10.4230/LIPIcs.FSCD.2024.2\">10.4230/LIPIcs.FSCD.2024.2</a>."},"type":"conference","publication_identifier":{"isbn":["9783959773232"],"issn":["1868-8969"]},"status":"public","_id":"17327","publication_status":"published","publication":"9th International Conference on Formal Structures for Computation and Deduction","file":[{"checksum":"cc6bb89be0eaa404a6ce019392cd293e","relation":"main_file","creator":"dernst","success":1,"date_updated":"2024-07-29T11:15:59Z","date_created":"2024-07-29T11:15:59Z","file_size":1391381,"file_id":"17341","content_type":"application/pdf","access_level":"open_access","file_name":"2024_LIPICs_Cano.pdf"}],"quality_controlled":"1","conference":{"start_date":"2024-07-10","location":"Tallinn, Estonia","end_date":"2024-07-13","name":"FSCD: Conference on Formal Structures for Computation and Deduction"},"title":"Abstraction-based decision making for statistical properties","article_number":"2","date_published":"2024-07-01T00:00:00Z","author":[{"full_name":"Cano, Filip","last_name":"Cano","first_name":"Filip"},{"first_name":"Thomas A","id":"40876CD8-F248-11E8-B48F-1D18A9856A87","full_name":"Henzinger, Thomas A","orcid":"0000-0002-2985-7724","last_name":"Henzinger"},{"first_name":"Bettina","full_name":"Könighofer, Bettina","last_name":"Könighofer"},{"last_name":"Kueffner","orcid":"0000-0001-8974-2542","full_name":"Kueffner, Konstantin","id":"8121a2d0-dc85-11ea-9058-af578f3b4515","first_name":"Konstantin"},{"full_name":"Mallik, Kaushik","last_name":"Mallik","orcid":"0000-0001-9864-7475","first_name":"Kaushik","id":"0834ff3c-6d72-11ec-94e0-b5b0a4fb8598"}]},{"language":[{"iso":"eng"}],"corr_author":"1","date_created":"2024-07-28T22:01:10Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file_date_updated":"2024-07-29T07:37:31Z","oa":1,"ec_funded":1,"project":[{"_id":"0599E47C-7A3F-11EA-A408-12923DDC885E","name":"Formal Methods for Stochastic Models: Algorithms and Applications","call_identifier":"H2020","grant_number":"863818"}],"department":[{"_id":"DaAl"},{"_id":"KrCh"}],"year":"2024","day":"17","doi":"10.1145/3662158.3662768","publisher":"Association for Computing Machinery","ddc":["000"],"acknowledgement":"This work was supported in part by the ERC-2020-CoG 863818 (FoRM-SMArt) grant. We thank James Aspnes and Thomas Sauerwald for several helpful discussions on Ehrenfest random walks.","scopus_import":"1","author":[{"first_name":"Dan-Adrian","id":"4A899BFC-F248-11E8-B48F-1D18A9856A87","full_name":"Alistarh, Dan-Adrian","last_name":"Alistarh","orcid":"0000-0003-3650-940X"},{"first_name":"Krishnendu","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","full_name":"Chatterjee, Krishnendu","orcid":"0000-0002-4561-241X","last_name":"Chatterjee"},{"last_name":"Karrabi","full_name":"Karrabi, Mehrdad","id":"67638922-f394-11eb-9cf6-f20423e08757","first_name":"Mehrdad"},{"first_name":"John M","id":"17ce3656-183e-11ef-84c3-8932383e1b23","full_name":"Lazarsfeld, John M","last_name":"Lazarsfeld"}],"date_published":"2024-06-17T00:00:00Z","title":"Game dynamics and equilibrium computation in the population protocol model","conference":{"location":"Nantes, France","start_date":"2024-06-17","name":"PODC: Symposium on Principles of Distributed Computing","end_date":"2024-06-21"},"quality_controlled":"1","publication":"Proceedings of the 43rd Annual ACM Symposium on Principles of Distributed Computing","file":[{"date_updated":"2024-07-29T07:37:31Z","success":1,"relation":"main_file","creator":"dernst","checksum":"65a40437f83373fa79dd999d5287509e","content_type":"application/pdf","access_level":"open_access","file_name":"2024_ACMPODC_Alistarh.pdf","file_id":"17335","date_created":"2024-07-29T07:37:31Z","file_size":750908}],"page":"40-49","publication_status":"published","_id":"17329","status":"public","publication_identifier":{"isbn":["9798400706684"]},"type":"conference","citation":{"ista":"Alistarh D-A, Chatterjee K, Karrabi M, Lazarsfeld JM. 2024. Game dynamics and equilibrium computation in the population protocol model. Proceedings of the 43rd Annual ACM Symposium on Principles of Distributed Computing. PODC: Symposium on Principles of Distributed Computing, 40–49.","short":"D.-A. Alistarh, K. Chatterjee, M. Karrabi, J.M. Lazarsfeld, in:, Proceedings of the 43rd Annual ACM Symposium on Principles of Distributed Computing, Association for Computing Machinery, 2024, pp. 40–49.","mla":"Alistarh, Dan-Adrian, et al. “Game Dynamics and Equilibrium Computation in the Population Protocol Model.” <i>Proceedings of the 43rd Annual ACM Symposium on Principles of Distributed Computing</i>, Association for Computing Machinery, 2024, pp. 40–49, doi:<a href=\"https://doi.org/10.1145/3662158.3662768\">10.1145/3662158.3662768</a>.","chicago":"Alistarh, Dan-Adrian, Krishnendu Chatterjee, Mehrdad Karrabi, and John M Lazarsfeld. “Game Dynamics and Equilibrium Computation in the Population Protocol Model.” In <i>Proceedings of the 43rd Annual ACM Symposium on Principles of Distributed Computing</i>, 40–49. Association for Computing Machinery, 2024. <a href=\"https://doi.org/10.1145/3662158.3662768\">https://doi.org/10.1145/3662158.3662768</a>.","ieee":"D.-A. Alistarh, K. Chatterjee, M. Karrabi, and J. M. Lazarsfeld, “Game dynamics and equilibrium computation in the population protocol model,” in <i>Proceedings of the 43rd Annual ACM Symposium on Principles of Distributed Computing</i>, Nantes, France, 2024, pp. 40–49.","ama":"Alistarh D-A, Chatterjee K, Karrabi M, Lazarsfeld JM. Game dynamics and equilibrium computation in the population protocol model. In: <i>Proceedings of the 43rd Annual ACM Symposium on Principles of Distributed Computing</i>. Association for Computing Machinery; 2024:40-49. doi:<a href=\"https://doi.org/10.1145/3662158.3662768\">10.1145/3662158.3662768</a>","apa":"Alistarh, D.-A., Chatterjee, K., Karrabi, M., &#38; Lazarsfeld, J. M. (2024). Game dynamics and equilibrium computation in the population protocol model. In <i>Proceedings of the 43rd Annual ACM Symposium on Principles of Distributed Computing</i> (pp. 40–49). Nantes, France: Association for Computing Machinery. <a href=\"https://doi.org/10.1145/3662158.3662768\">https://doi.org/10.1145/3662158.3662768</a>"},"article_processing_charge":"Yes (via OA deal)","oa_version":"Published Version","has_accepted_license":"1","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png"},"date_updated":"2025-04-14T07:52:47Z","month":"06","abstract":[{"text":"We initiate the study of game dynamics in the population protocol model: n agents each maintain a current local strategy and interact in pairs uniformly at random. Upon each interaction, the agents play a two-person game and receive a payoff from an underlying utility function, and they can subsequently update their strategies according to a fixed local algorithm. In this setting, we ask how the distribution over agent strategies evolves over a sequence of interactions, and we introduce a new distributional equilibrium concept to quantify the quality of such distributions. As an initial example, we study a class of repeated prisoner's dilemma games, and we consider a family of simple local update algorithms that yield non-trivial dynamics over the distribution of agent strategies. We show that these dynamics are related to a new class of high-dimensional Ehrenfest random walks, and we derive exact characterizations of their stationary distributions, bounds on their mixing times, and prove their convergence to approximate distributional equilibria. Our results highlight trade-offs between the local state space of each agent, and the convergence rate and approximation factor of the underlying dynamics. Our approach opens the door towards the further characterization of equilibrium computation for other classes of games and dynamics in the population setting.","lang":"eng"}]},{"acknowledgement":"Part of this work was done while Nicolas Resch was affiliated with the Centrum Wiskunde & Informatica and supported in part by ERC H2020 grant No.74079 (ALGSTRONGCRYPTO). Chen Yuan is supported in part by the National Key Research and Development Projects under Grant 2022YFA1004900 and Grant 2021YFE0109900, the National Natural Science Foundation of China under Grant 12101403 and Grant 12031011.","scopus_import":"1","OA_type":"green","day":"01","arxiv":1,"doi":"10.1109/TIT.2024.3430842","publisher":"IEEE","main_file_link":[{"url":"https://arxiv.org/abs/2210.07754","open_access":"1"}],"intvolume":"        70","department":[{"_id":"MaMo"}],"year":"2024","language":[{"iso":"eng"}],"external_id":{"isi":["001299623600019"],"arxiv":["2210.07754"]},"OA_place":"repository","corr_author":"1","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","date_created":"2024-07-28T22:01:10Z","oa":1,"isi":1,"oa_version":"Preprint","article_type":"original","related_material":{"record":[{"relation":"earlier_version","status":"public","id":"14083"}]},"abstract":[{"text":"In this work we consider the list-decodability and list-recoverability of arbitrary q -ary codes, for all integer values of q ⩾ 2. A code is called ( p , L ) q -list-decodable if every radius pn Hamming ball contains less than L codewords; ( p , ℓ, L ) q -recoverability is a generalization where we place radius pn Hamming balls on every point of a combinatorial rectangle with side length ℓ and again stipulate that there be less than L codewords. Our main contribution is to precisely calculate the maximum value of p for which there exist infinite families of positive rate ( p , ℓ, L ) q -list-recoverable codes, the quantity we call the zero-rate threshold . Denoting this value by p *, we in fact show that codes correcting a p * + ε fraction of errors must have size O ε (1), i.e., independent of n . Such a result is typically referred to as a “Plotkin bound.” To complement this, a standard random code with expurgation construction shows that there exist positive rate codes correcting a p * − ε fraction of errors. We also follow a classical proof template (typically attributed to Elias and Bassalygo) to derive from the zero-rate threshold other tradeoffs between rate and decoding radius for list-decoding and list-recovery. Technically, proving the Plotkin bound boils down to demon-strating the Schur convexity of a certain function defined on the q -simplex as well as the convexity of a univariate function derived from it. We remark that an earlier argument claimed similar results for q -ary list-decoding; however, we point out that this earlier proof is flawed.","lang":"eng"}],"month":"09","volume":70,"date_updated":"2025-09-08T08:31:53Z","issue":"9","_id":"17330","status":"public","type":"journal_article","publication_identifier":{"eissn":["1557-9654"],"issn":["0018-9448"]},"article_processing_charge":"No","citation":{"apa":"Resch, N., Yuan, C., &#38; Zhang, Y. (2024). Zero-rate thresholds and new capacity bounds for list-decoding and list-recovery. <i>IEEE Transactions on Information Theory</i>. IEEE. <a href=\"https://doi.org/10.1109/TIT.2024.3430842\">https://doi.org/10.1109/TIT.2024.3430842</a>","ama":"Resch N, Yuan C, Zhang Y. Zero-rate thresholds and new capacity bounds for list-decoding and list-recovery. <i>IEEE Transactions on Information Theory</i>. 2024;70(9):6211-6238. doi:<a href=\"https://doi.org/10.1109/TIT.2024.3430842\">10.1109/TIT.2024.3430842</a>","ieee":"N. Resch, C. Yuan, and Y. Zhang, “Zero-rate thresholds and new capacity bounds for list-decoding and list-recovery,” <i>IEEE Transactions on Information Theory</i>, vol. 70, no. 9. IEEE, pp. 6211–6238, 2024.","chicago":"Resch, Nicolas, Chen Yuan, and Yihan Zhang. “Zero-Rate Thresholds and New Capacity Bounds for List-Decoding and List-Recovery.” <i>IEEE Transactions on Information Theory</i>. IEEE, 2024. <a href=\"https://doi.org/10.1109/TIT.2024.3430842\">https://doi.org/10.1109/TIT.2024.3430842</a>.","mla":"Resch, Nicolas, et al. “Zero-Rate Thresholds and New Capacity Bounds for List-Decoding and List-Recovery.” <i>IEEE Transactions on Information Theory</i>, vol. 70, no. 9, IEEE, 2024, pp. 6211–38, doi:<a href=\"https://doi.org/10.1109/TIT.2024.3430842\">10.1109/TIT.2024.3430842</a>.","short":"N. Resch, C. Yuan, Y. Zhang, IEEE Transactions on Information Theory 70 (2024) 6211–6238.","ista":"Resch N, Yuan C, Zhang Y. 2024. Zero-rate thresholds and new capacity bounds for list-decoding and list-recovery. IEEE Transactions on Information Theory. 70(9), 6211–6238."},"quality_controlled":"1","publication":"IEEE Transactions on Information Theory","publication_status":"published","page":"6211-6238","date_published":"2024-09-01T00:00:00Z","author":[{"first_name":"Nicolas","full_name":"Resch, Nicolas","last_name":"Resch"},{"first_name":"Chen","last_name":"Yuan","full_name":"Yuan, Chen"},{"first_name":"Yihan","id":"2ce5da42-b2ea-11eb-bba5-9f264e9d002c","full_name":"Zhang, Yihan","last_name":"Zhang","orcid":"0000-0002-6465-6258"}],"title":"Zero-rate thresholds and new capacity bounds for list-decoding and list-recovery"},{"acknowledgement":"The authors acknowledge Rosana del Cid for her help with English corrections, Mario Ramos for the figure editions, and Gabriela Finarelli for technical assistance. S.A. Rosú, N.A. Ramella, and M.A. Tricerri acknowledge support from Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET) (Grant PIP 11220200102381), Agencia Nacional de Promoción Científica y Tecnológica (PICT 2019-03592), Universidad Nacional de La Plata (UNLP) (Grants M234 and PPID M014), and Fundación Florencio Fiorini. The authors warmly thank M.P. for her willingness to conduct these studies.","scopus_import":"1","OA_type":"green","day":"01","doi":"10.1002/prot.26732","publisher":"Wiley","main_file_link":[{"open_access":"1","url":"https://doi.org/10.22541/au.171804763.37967262/v1"}],"department":[{"_id":"GaNo"}],"intvolume":"        92","year":"2024","external_id":{"isi":["001272128100001"],"pmid":["39031927"]},"language":[{"iso":"eng"}],"OA_place":"repository","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","date_created":"2024-07-28T22:01:10Z","oa":1,"isi":1,"oa_version":"Preprint","article_type":"original","date_updated":"2025-09-08T08:33:53Z","issue":"12","month":"12","abstract":[{"lang":"eng","text":"Amyloidosis are a group of diseases in which soluble proteins aggregate and deposit in fibrillar conformation extracellularly in tissues. The effectiveness of therapeutic strategies depends on the specific protein involved, being crucial to accurately determine its nature. Moreover, following the diagnosis, the search for the mutation within relatives allows the clinical advice. Here we report the precise diagnosis and explored the possible reasons of the structural pathogenicity for a renal amyloidosis related to a fibrinogen Aα-chain variant. Whole-exome sequencing and GATK calling pipeline were leveraged to characterize the protein variant present in a patient with kidney failure. Bioinformatics strategies were applied to suggest potential explanations of the variants aggregation. Our pipeline allowed the identification of a single-point variant of fibrinogen Aα-chain, which opened the possibility of curative transplantation. In silico structural analysis suggested that the pathogenicity of the variant may be attributed to a heightened susceptibility to yield a peptide prone to deposit as an oligomer with a β-sheet structure. Exploiting the comprehensive coverage of whole-genome sequencing, we managed to fill a vacant stage in the diagnosis of hereditary amyloidosis and to stimulate the advancement in biomedicine."}],"volume":92,"_id":"17331","status":"public","publication_identifier":{"issn":["0887-3585"],"eissn":["1097-0134"]},"type":"journal_article","citation":{"ama":"Cattaneo ER, Gisonno RA, Abba MC, et al. Hereditary amyloidosis: Insights into a fibrinogen A variant protein. <i>Proteins: Structure, Function and Bioinformatics</i>. 2024;92(12):1366-1374. doi:<a href=\"https://doi.org/10.1002/prot.26732\">10.1002/prot.26732</a>","apa":"Cattaneo, E. R., Gisonno, R. A., Abba, M. C., Santana, M., Rosú, S. A., Nucifora, E., … Ramella, N. A. (2024). Hereditary amyloidosis: Insights into a fibrinogen A variant protein. <i>Proteins: Structure, Function and Bioinformatics</i>. Wiley. <a href=\"https://doi.org/10.1002/prot.26732\">https://doi.org/10.1002/prot.26732</a>","short":"E.R. Cattaneo, R.A. Gisonno, M.C. Abba, M. Santana, S.A. Rosú, E. Nucifora, M.A. Aguirre, M.C. Giordani, M.A. Tricerri, N.A. Ramella, Proteins: Structure, Function and Bioinformatics 92 (2024) 1366–1374.","ista":"Cattaneo ER, Gisonno RA, Abba MC, Santana M, Rosú SA, Nucifora E, Aguirre MA, Giordani MC, Tricerri MA, Ramella NA. 2024. Hereditary amyloidosis: Insights into a fibrinogen A variant protein. Proteins: Structure, Function and Bioinformatics. 92(12), 1366–1374.","ieee":"E. R. Cattaneo <i>et al.</i>, “Hereditary amyloidosis: Insights into a fibrinogen A variant protein,” <i>Proteins: Structure, Function and Bioinformatics</i>, vol. 92, no. 12. Wiley, pp. 1366–1374, 2024.","chicago":"Cattaneo, Elizabeth R, Romina A Gisonno, Martín C Abba, Marianela Santana, Silvana A Rosú, Elsa Nucifora, María A Aguirre, María C Giordani, M. Alejandra Tricerri, and Nahuel A Ramella. “Hereditary Amyloidosis: Insights into a Fibrinogen A Variant Protein.” <i>Proteins: Structure, Function and Bioinformatics</i>. Wiley, 2024. <a href=\"https://doi.org/10.1002/prot.26732\">https://doi.org/10.1002/prot.26732</a>.","mla":"Cattaneo, Elizabeth R., et al. “Hereditary Amyloidosis: Insights into a Fibrinogen A Variant Protein.” <i>Proteins: Structure, Function and Bioinformatics</i>, vol. 92, no. 12, Wiley, 2024, pp. 1366–74, doi:<a href=\"https://doi.org/10.1002/prot.26732\">10.1002/prot.26732</a>."},"article_processing_charge":"No","pmid":1,"quality_controlled":"1","publication":"Proteins: Structure, Function and Bioinformatics","publication_status":"published","page":"1366-1374","author":[{"first_name":"Elizabeth R","full_name":"Cattaneo, Elizabeth R","last_name":"Cattaneo"},{"first_name":"Romina A","id":"a9e08d76-6a98-11ec-8f7b-c777fe5ca519","full_name":"Gisonno, Romina A","last_name":"Gisonno"},{"first_name":"Martín C","last_name":"Abba","full_name":"Abba, Martín C"},{"last_name":"Santana","full_name":"Santana, Marianela","first_name":"Marianela"},{"first_name":"Silvana A","last_name":"Rosú","full_name":"Rosú, Silvana A"},{"last_name":"Nucifora","full_name":"Nucifora, Elsa","first_name":"Elsa"},{"first_name":"María A","full_name":"Aguirre, María A","last_name":"Aguirre"},{"full_name":"Giordani, María C","last_name":"Giordani","first_name":"María C"},{"last_name":"Tricerri","full_name":"Tricerri, M. Alejandra","first_name":"M. Alejandra"},{"full_name":"Ramella, Nahuel A","last_name":"Ramella","first_name":"Nahuel A"}],"date_published":"2024-12-01T00:00:00Z","title":"Hereditary amyloidosis: Insights into a fibrinogen A variant protein"},{"acknowledgement":"We thank Trevor Brown and Yuanhao Wei for the discussion and anonymous reviewers for helping us to improve the paper. Also, we thank JetBrains and Huawei for their support.","scopus_import":"1","arxiv":1,"doi":"10.1109/IPDPS57955.2024.00023","publisher":"IEEE","day":"08","year":"2024","department":[{"_id":"DaAl"}],"main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2310.05293"}],"date_created":"2024-07-28T22:01:11Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","oa":1,"language":[{"iso":"eng"}],"external_id":{"isi":["001270389600078"],"arxiv":["2310.05293"]},"corr_author":"1","month":"07","abstract":[{"text":"Tree data structures, such as red-black trees, quad trees, treaps, or tries, are fundamental tools in computer science. A classical problem in concurrency is to obtain expressive, efficient, and scalable versions of practical tree data structures. We are interested in concurrent trees supporting range queries, i.e., queries that involve multiple consecutive data items. Existing implementations with this capability can list keys in a specific range, but do not support aggregate range queries: for instance, if we want to calculate the number of keys in a range, the only choice is to retrieve a whole list and return its size. This is suboptimal: in the sequential setting, one can augment a balanced search tree with counters and, consequently, perform these aggregate requests in logarithmic rather than linear time.In this paper, we propose a generic approach to implement a broad class of range queries on concurrent trees in a way that is wait-free, asymptotically efficient, and practically scalable. The key idea is a new mechanism for maintaining metadata concurrently at tree nodes, which can be seen as a wait-free variant of hand-over-hand locking (which we call hand-over-hand helping). We did a preliminary implementation of the wait-free binary search tree and preliminary experiments have indicated the soundness of our approach.","lang":"eng"}],"date_updated":"2025-09-08T08:29:45Z","isi":1,"oa_version":"Preprint","type":"conference","publication_identifier":{"isbn":["9798350337662"],"eissn":["1530-2075"]},"article_processing_charge":"No","citation":{"ama":"Kokorin I, Yudov V, Aksenov V, Alistarh D-A. Wait-free trees with asymptotically-efficient range queries. In: <i>2024 IEEE International Parallel and Distributed Processing Symposium</i>. IEEE; 2024:169-179. doi:<a href=\"https://doi.org/10.1109/IPDPS57955.2024.00023\">10.1109/IPDPS57955.2024.00023</a>","apa":"Kokorin, I., Yudov, V., Aksenov, V., &#38; Alistarh, D.-A. (2024). Wait-free trees with asymptotically-efficient range queries. In <i>2024 IEEE International Parallel and Distributed Processing Symposium</i> (pp. 169–179). San Francisco, CA, United States: IEEE. <a href=\"https://doi.org/10.1109/IPDPS57955.2024.00023\">https://doi.org/10.1109/IPDPS57955.2024.00023</a>","short":"I. Kokorin, V. Yudov, V. Aksenov, D.-A. Alistarh, in:, 2024 IEEE International Parallel and Distributed Processing Symposium, IEEE, 2024, pp. 169–179.","ista":"Kokorin I, Yudov V, Aksenov V, Alistarh D-A. 2024. Wait-free trees with asymptotically-efficient range queries. 2024 IEEE International Parallel and Distributed Processing Symposium. IPDPS: International Parallel and Distributed Processing Symposium, 169–179.","ieee":"I. Kokorin, V. Yudov, V. Aksenov, and D.-A. Alistarh, “Wait-free trees with asymptotically-efficient range queries,” in <i>2024 IEEE International Parallel and Distributed Processing Symposium</i>, San Francisco, CA, United States, 2024, pp. 169–179.","chicago":"Kokorin, Ilya, Victor Yudov, Vitaly Aksenov, and Dan-Adrian Alistarh. “Wait-Free Trees with Asymptotically-Efficient Range Queries.” In <i>2024 IEEE International Parallel and Distributed Processing Symposium</i>, 169–79. IEEE, 2024. <a href=\"https://doi.org/10.1109/IPDPS57955.2024.00023\">https://doi.org/10.1109/IPDPS57955.2024.00023</a>.","mla":"Kokorin, Ilya, et al. “Wait-Free Trees with Asymptotically-Efficient Range Queries.” <i>2024 IEEE International Parallel and Distributed Processing Symposium</i>, IEEE, 2024, pp. 169–79, doi:<a href=\"https://doi.org/10.1109/IPDPS57955.2024.00023\">10.1109/IPDPS57955.2024.00023</a>."},"status":"public","_id":"17332","publication_status":"published","page":"169-179","quality_controlled":"1","publication":"2024 IEEE International Parallel and Distributed Processing Symposium","title":"Wait-free trees with asymptotically-efficient range queries","conference":{"start_date":"2024-05-27","location":"San Francisco, CA, United States","end_date":"2024-05-31","name":"IPDPS: International Parallel and Distributed Processing Symposium"},"date_published":"2024-07-08T00:00:00Z","author":[{"first_name":"Ilya","full_name":"Kokorin, Ilya","last_name":"Kokorin"},{"last_name":"Yudov","full_name":"Yudov, Victor","first_name":"Victor"},{"first_name":"Vitaly","last_name":"Aksenov","full_name":"Aksenov, Vitaly"},{"first_name":"Dan-Adrian","id":"4A899BFC-F248-11E8-B48F-1D18A9856A87","full_name":"Alistarh, Dan-Adrian","last_name":"Alistarh","orcid":"0000-0003-3650-940X"}]},{"scopus_import":"1","day":"26","doi":"10.1038/s41929-024-01184-7","publisher":"Springer Nature","intvolume":"         7","department":[{"_id":"StFr"}],"year":"2024","external_id":{"isi":["001278986700012"]},"language":[{"iso":"eng"}],"corr_author":"1","date_created":"2024-07-29T07:05:33Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","oa_version":"None","isi":1,"article_type":"letter_note","issue":"7","date_updated":"2025-09-08T08:30:59Z","abstract":[{"text":"Aqueous zinc-ion batteries are attractive due to their low cost, environmental friendliness, and exceptional performance, but the latter remains poorly understood. Now, a fast catalytic step involved in oxygen redox catalysis is shown to contribute to capacity at a high rate.","lang":"eng"}],"volume":7,"month":"07","status":"public","_id":"17333","publication_identifier":{"issn":["2520-1158"]},"type":"journal_article","citation":{"ieee":"S. Mondal and S. A. Freunberger, “Catalysing rate and capacity,” <i>Nature Catalysis</i>, vol. 7, no. 7. Springer Nature, pp. 759–760, 2024.","chicago":"Mondal, Soumyadip, and Stefan Alexander Freunberger. “Catalysing Rate and Capacity.” <i>Nature Catalysis</i>. Springer Nature, 2024. <a href=\"https://doi.org/10.1038/s41929-024-01184-7\">https://doi.org/10.1038/s41929-024-01184-7</a>.","mla":"Mondal, Soumyadip, and Stefan Alexander Freunberger. “Catalysing Rate and Capacity.” <i>Nature Catalysis</i>, vol. 7, no. 7, Springer Nature, 2024, pp. 759–60, doi:<a href=\"https://doi.org/10.1038/s41929-024-01184-7\">10.1038/s41929-024-01184-7</a>.","short":"S. Mondal, S.A. Freunberger, Nature Catalysis 7 (2024) 759–760.","ista":"Mondal S, Freunberger SA. 2024. Catalysing rate and capacity. Nature Catalysis. 7(7), 759–760.","apa":"Mondal, S., &#38; Freunberger, S. A. (2024). Catalysing rate and capacity. <i>Nature Catalysis</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41929-024-01184-7\">https://doi.org/10.1038/s41929-024-01184-7</a>","ama":"Mondal S, Freunberger SA. Catalysing rate and capacity. <i>Nature Catalysis</i>. 2024;7(7):759-760. doi:<a href=\"https://doi.org/10.1038/s41929-024-01184-7\">10.1038/s41929-024-01184-7</a>"},"article_processing_charge":"No","quality_controlled":"1","publication":"Nature Catalysis","page":"759-760","publication_status":"published","author":[{"last_name":"Mondal","full_name":"Mondal, Soumyadip","id":"d25d21ef-dc8d-11ea-abe3-ec4576307f48","first_name":"Soumyadip"},{"id":"A8CA28E6-CE23-11E9-AD2D-EC27E6697425","first_name":"Stefan Alexander","orcid":"0000-0003-2902-5319","last_name":"Freunberger","full_name":"Freunberger, Stefan Alexander"}],"date_published":"2024-07-26T00:00:00Z","title":"Catalysing rate and capacity"},{"ec_funded":1,"year":"2024","department":[{"_id":"GradSch"},{"_id":"JaMa"}],"project":[{"call_identifier":"H2020","grant_number":"716117","name":"Optimal Transport and Stochastic Dynamics","_id":"256E75B8-B435-11E9-9278-68D0E5697425"},{"name":"Taming Complexity in Partial Differential Systems","_id":"fc31cba2-9c52-11eb-aca3-ff467d239cd2","grant_number":"F6504"}],"user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","license":"https://creativecommons.org/licenses/by-nc-nd/4.0/","degree_awarded":"PhD","date_created":"2024-07-29T09:14:14Z","oa":1,"file_date_updated":"2024-08-02T09:27:15Z","language":[{"iso":"eng"}],"OA_place":"publisher","corr_author":"1","ddc":["500","510","515","519"],"doi":"10.15479/at:ista:17336","publisher":"Institute of Science and Technology Austria","day":"31","alternative_title":["ISTA Thesis"],"page":"183","publication_status":"published","file":[{"file_name":"thesis_final.pdf","file_id":"17366","content_type":"application/pdf","access_level":"open_access","file_size":2941599,"date_created":"2024-08-02T09:23:26Z","date_updated":"2024-08-02T09:23:26Z","success":1,"creator":"fpedrott","checksum":"11650bab714ef85ad43a287060850523","relation":"main_file"},{"date_updated":"2024-08-02T09:27:15Z","creator":"fpedrott","relation":"source_file","checksum":"c30ba5611941226cf1bfc867c25b1e80","file_id":"17367","file_name":"thesis_final_source.zip","content_type":"application/x-zip-compressed","access_level":"closed","date_created":"2024-08-02T09:27:15Z","file_size":6293375}],"title":"Functional inequalities and convergence of stochastic processes","date_published":"2024-07-31T00:00:00Z","author":[{"full_name":"Pedrotti, Francesco","last_name":"Pedrotti","first_name":"Francesco","id":"d3ac8ac6-dc8d-11ea-abe3-e2a9628c4c3c"}],"related_material":{"record":[{"status":"public","id":"17351","relation":"part_of_dissertation"},{"relation":"part_of_dissertation","id":"17353","status":"public"},{"id":"17350","status":"public","relation":"part_of_dissertation"},{"relation":"part_of_dissertation","status":"public","id":"17352"},{"relation":"part_of_dissertation","status":"public","id":"17143"}]},"abstract":[{"lang":"eng","text":"This thesis deals with the study of stochastic processes and their ergodicity properties. The\r\nvariety of problems encountered calls for a set of different approaches, ranging from classical to\r\nmodern ones: a special place is held by probabilistic methods based on couplings, by functional\r\ninequalities, and by the theory of gradient flows in the space of measures.\r\n\r\nThe material is organized as follows. Chapter 1 contains the introduction to this thesis, starting\r\nwith a general presentation of some of the relevant topics. Section 1.1 is dedicated to the\r\ntheory of gradient flows in metric spaces, and introduces the first contribution of this thesis\r\n[DSMP24], which is presented in detail in Chapter 2. Section 1.2 moves to the topic of\r\ncurvature of Markov chains, concluding with a brief description of our second contribution\r\n[Ped23], which is included in Chapter 3. Section 1.3 discusses applications of stochastic\r\nprocesses to the theory of sampling, in particular the recent framework of score-based diffusion\r\nmodels, and our contribution [PMM24], which is contained in Chapter 4. Section 1.4 discusses\r\nsome related problems, concerning the regularization properties of the heat flow. It serves\r\nas a motivation for the work [BP24], which we report in Chapter 5. Finally, Section 1.5\r\ndiscusses the last contribution of this thesis, which can be found in Chapter 6. It deals with\r\nthe convergence to equilibrium of a particular stochastic model from quantitative genetics:\r\nthis is established via some functional inequalities, which we prove with probabilistic arguments\r\nbased on couplings.\r\n"}],"month":"07","date_updated":"2026-04-07T13:00:03Z","has_accepted_license":"1","oa_version":"Published Version","tmp":{"image":"/images/cc_by_nc_nd.png","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","short":"CC BY-NC-ND (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode"},"type":"dissertation","publication_identifier":{"issn":["2663-337X"]},"article_processing_charge":"No","citation":{"short":"F. Pedrotti, Functional Inequalities and Convergence of Stochastic Processes, Institute of Science and Technology Austria, 2024.","ista":"Pedrotti F. 2024. Functional inequalities and convergence of stochastic processes. Institute of Science and Technology Austria.","chicago":"Pedrotti, Francesco. “Functional Inequalities and Convergence of Stochastic Processes.” Institute of Science and Technology Austria, 2024. <a href=\"https://doi.org/10.15479/at:ista:17336\">https://doi.org/10.15479/at:ista:17336</a>.","ieee":"F. Pedrotti, “Functional inequalities and convergence of stochastic processes,” Institute of Science and Technology Austria, 2024.","mla":"Pedrotti, Francesco. <i>Functional Inequalities and Convergence of Stochastic Processes</i>. Institute of Science and Technology Austria, 2024, doi:<a href=\"https://doi.org/10.15479/at:ista:17336\">10.15479/at:ista:17336</a>.","ama":"Pedrotti F. Functional inequalities and convergence of stochastic processes. 2024. doi:<a href=\"https://doi.org/10.15479/at:ista:17336\">10.15479/at:ista:17336</a>","apa":"Pedrotti, F. (2024). <i>Functional inequalities and convergence of stochastic processes</i>. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/at:ista:17336\">https://doi.org/10.15479/at:ista:17336</a>"},"supervisor":[{"id":"4C5696CE-F248-11E8-B48F-1D18A9856A87","first_name":"Jan","last_name":"Maas","orcid":"0000-0002-0845-1338","full_name":"Maas, Jan"}],"_id":"17336","status":"public"},{"abstract":[{"text":"This file contains the Mathematica notebook associated with the paper Effect of assortative mating and sexual selection on polygenic barriers to gene flow. It contains the numerical approximations, analyses, and simulations used in the study. ","lang":"eng"}],"month":"07","date_updated":"2025-01-14T13:02:59Z","ddc":["576"],"has_accepted_license":"1","oa_version":"Published Version","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png"},"type":"research_data","doi":"10.15479/AT:ISTA:17344","publisher":"Institute of Science and Technology Austria","article_processing_charge":"No","citation":{"ama":"Surendranadh P, Sachdeva H. Mathematica notebook for “Effect of assortative mating and sexual selection on polygenic barriers to gene flow.” 2024. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:17344\">10.15479/AT:ISTA:17344</a>","apa":"Surendranadh, P., &#38; Sachdeva, H. (2024). Mathematica notebook for “Effect of assortative mating and sexual selection on polygenic barriers to gene flow.” Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:17344\">https://doi.org/10.15479/AT:ISTA:17344</a>","ista":"Surendranadh P, Sachdeva H. 2024. Mathematica notebook for ‘Effect of assortative mating and sexual selection on polygenic barriers to gene flow’, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:17344\">10.15479/AT:ISTA:17344</a>.","short":"P. Surendranadh, H. Sachdeva, (2024).","mla":"Surendranadh, Parvathy, and Himani Sachdeva. <i>Mathematica Notebook for “Effect of Assortative Mating and Sexual Selection on Polygenic Barriers to Gene Flow.”</i> Institute of Science and Technology Austria, 2024, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:17344\">10.15479/AT:ISTA:17344</a>.","chicago":"Surendranadh, Parvathy, and Himani Sachdeva. “Mathematica Notebook for ‘Effect of Assortative Mating and Sexual Selection on Polygenic Barriers to Gene Flow.’” Institute of Science and Technology Austria, 2024. <a href=\"https://doi.org/10.15479/AT:ISTA:17344\">https://doi.org/10.15479/AT:ISTA:17344</a>.","ieee":"P. Surendranadh and H. Sachdeva, “Mathematica notebook for ‘Effect of assortative mating and sexual selection on polygenic barriers to gene flow.’” Institute of Science and Technology Austria, 2024."},"status":"public","_id":"17344","year":"2024","department":[{"_id":"GradSch"},{"_id":"NiBa"}],"file":[{"file_size":726132,"date_created":"2024-07-29T13:51:11Z","content_type":"application/octet-stream","access_level":"open_access","file_name":"Submission.nb","file_id":"17345","checksum":"75bdbc7ad7cc6afe4459bc4a8824a302","creator":"psurendr","success":1,"relation":"main_file","date_updated":"2024-07-29T13:51:11Z"}],"title":"Mathematica notebook for 'Effect of assortative mating and sexual selection on polygenic barriers to gene flow'","date_created":"2024-07-29T14:01:43Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa":1,"file_date_updated":"2024-07-29T13:51:11Z","date_published":"2024-07-01T00:00:00Z","acknowledged_ssus":[{"_id":"ScienComp"}],"author":[{"orcid":"0000-0001-6395-386X","last_name":"Surendranadh","full_name":"Surendranadh, Parvathy","id":"455235B8-F248-11E8-B48F-1D18A9856A87","first_name":"Parvathy"},{"last_name":"Sachdeva","full_name":"Sachdeva, Himani","first_name":"Himani"}]}]