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Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:17196\">https://doi.org/10.15479/AT:ISTA:17196</a>"},"year":"2024","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"acknowledgement":"This research was supported by the Scientific Service Units of ISTA through resources provided by the MIBA Machine Shop and the Nanofabrication facility. ","abstract":[{"text":"This .zip File contains the data for the figures presented in the main text and supplementary material of \"A gate tunable transmon qubit in planar Ge\" by O.Sagi et al. The measurements were done using Qcodes. The description of the files and the instructions on opening the data can be found in the Readme. An additional Jupyter Notebook is attached that walks through the data analysis.","lang":"eng"}],"title":"A gate-tunable transmon in planar Ge","license":"https://creativecommons.org/licenses/by/4.0/","publisher":"Institute of Science and Technology Austria","project":[{"grant_number":"I05060","_id":"c0977eea-5a5b-11eb-8a69-a862db0cf4d1","name":"High impedance circuit quantum electrodynamics with hole spins"},{"_id":"262116AA-B435-11E9-9278-68D0E5697425","name":"Hybrid Semiconductor - Superconductor Quantum Devices"},{"grant_number":"P36507","_id":"bd8bd29e-d553-11ed-ba76-f0070d4b237a","name":"Merging spin and superconducting qubits in planar Ge"}],"status":"public"},{"scopus_import":"1","publication_identifier":{"issn":["0022-0957"]},"author":[{"last_name":"Zhang","first_name":"Zilin","full_name":"Zhang, Zilin"},{"last_name":"Chen","id":"83c96512-15b2-11ec-abd3-b7eede36184f","first_name":"Huihuang","full_name":"Chen, Huihuang"},{"first_name":"Shuaiying","full_name":"Peng, Shuaiying","last_name":"Peng"},{"last_name":"Han","first_name":"Huibin","full_name":"Han, Huibin"}],"article_number":"erae246","supplementarymaterial":"no","type":"journal_article","article_processing_charge":"No","day":"27","has_accepted_license":"1","ddc":["580"],"fulldoi":"https://doi.org/10.1093/jxb/erae246","language":[{"iso":"eng"}],"external_id":{"isi":["001270051200001"],"pmid":["38794966"]},"date_published":"2024-09-27T00:00:00Z","pmid":1,"doi":"10.1093/jxb/erae246","OA_type":"hybrid","citation":{"apa":"Zhang, Z., Chen, H., Peng, S., &#38; Han, H. (2024). Slow and rapid auxin responses in Arabidopsis. <i>Journal of Experimental Botany</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/jxb/erae246\">https://doi.org/10.1093/jxb/erae246</a>","chicago":"Zhang, Zilin, Huihuang Chen, Shuaiying Peng, and Huibin Han. “Slow and Rapid Auxin Responses in Arabidopsis.” <i>Journal of Experimental Botany</i>. Oxford University Press, 2024. <a href=\"https://doi.org/10.1093/jxb/erae246\">https://doi.org/10.1093/jxb/erae246</a>.","ieee":"Z. Zhang, H. Chen, S. Peng, and H. Han, “Slow and rapid auxin responses in Arabidopsis,” <i>Journal of Experimental Botany</i>, vol. 75, no. 18. Oxford University Press, 2024.","short":"Z. Zhang, H. Chen, S. Peng, H. Han, Journal of Experimental Botany 75 (2024).","ista":"Zhang Z, Chen H, Peng S, Han H. 2024. Slow and rapid auxin responses in Arabidopsis. Journal of Experimental Botany. 75(18), erae246.","mla":"Zhang, Zilin, et al. “Slow and Rapid Auxin Responses in Arabidopsis.” <i>Journal of Experimental Botany</i>, vol. 75, no. 18, erae246, Oxford University Press, 2024, doi:<a href=\"https://doi.org/10.1093/jxb/erae246\">10.1093/jxb/erae246</a>.","ama":"Zhang Z, Chen H, Peng S, Han H. Slow and rapid auxin responses in Arabidopsis. <i>Journal of Experimental Botany</i>. 2024;75(18). doi:<a href=\"https://doi.org/10.1093/jxb/erae246\">10.1093/jxb/erae246</a>"},"OA_place":"publisher","publication_status":"published","volume":75,"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"researchdata_availability":"no","year":"2024","acknowledgement":"We thank other lab members for their critical comments on this manuscript. We also thank the editor and reviewers for their constructive comments to improve our manuscript. We apologize to authors whose important work we could not include due to space limitations.\r\nThis work is supported by funding from Jiangxi Agricultural University (9232308314) and the Science and Technology Department of Jiangxi Province (20223BCJ25037) to HBH, and the Science and Technology Department of Jiangxi Province (20202ACB215002) to SYP.","title":"Slow and rapid auxin responses in Arabidopsis","abstract":[{"text":"The TIR1/AFB–Aux/IAA–ARF canonical auxin signaling pathway is widely accepted to (de)active transcriptional regulation, thus controlling auxin-associated developmental processes. However, the theme of a rapid auxin response has emerged since the 2018 Auxins and Cytokinin in Plant Development conference. To date, a few signaling components have been identified to mediate both slow and rapid auxin responses, which unveils the complexity of auxin signaling.","lang":"eng"}],"quality_controlled":"1","issue":"18","status":"public","publisher":"Oxford University Press","_id":"17141","month":"09","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","date_created":"2024-06-15T19:50:15Z","department":[{"_id":"GradSch"},{"_id":"JiFr"}],"article_type":"original","das_tickbox":"0","file":[{"relation":"main_file","file_size":763097,"checksum":"91b9435ed0f6640809c7588df19abf2f","date_created":"2025-01-02T10:26:22Z","content_type":"application/pdf","access_level":"open_access","success":1,"date_updated":"2025-01-02T10:26:22Z","file_id":"18720","file_name":"2024_JourExperimentalBotany_Zhang.pdf","creator":"dernst"}],"date_updated":"2026-10-02T11:25:38Z","isi":1,"oa":1,"oa_version":"Published Version","publication":"Journal of Experimental Botany","file_date_updated":"2025-01-02T10:26:22Z","intvolume":"        75"},{"date_published":"2024-02-21T00:00:00Z","language":[{"iso":"eng"}],"fulldoi":"https://doi.org/10.1101/2024.02.21.581330","day":"21","type":"preprint","article_processing_charge":"No","acknowledged_ssus":[{"_id":"Bio"},{"_id":"LifeSc"},{"_id":"M-Shop"},{"_id":"E-Lib"}],"corr_author":"1","supplementarymaterial":"no","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1101/2024.02.21.581330"}],"author":[{"last_name":"Gallei","orcid":"0000-0003-1286-7368","full_name":"Gallei, Michelle C","id":"35A03822-F248-11E8-B48F-1D18A9856A87","first_name":"Michelle C"},{"id":"45812BD4-F248-11E8-B48F-1D18A9856A87","first_name":"Sven M","full_name":"Truckenbrodt, Sven M","last_name":"Truckenbrodt"},{"first_name":"Caroline","id":"382077BA-F248-11E8-B48F-1D18A9856A87","full_name":"Kreuzinger, Caroline","last_name":"Kreuzinger"},{"full_name":"Inumella, Syamala","id":"F8660870-D756-11E9-98C5-34DFE5697425","first_name":"Syamala","orcid":"0009-0002-5890-120X","last_name":"Inumella"},{"last_name":"Vistunou","full_name":"Vistunou, Vitali","first_name":"Vitali","id":"7e146587-8972-11ed-ae7b-d7a32ea86a81"},{"id":"4DF26D8C-F248-11E8-B48F-1D18A9856A87","first_name":"Christoph M","full_name":"Sommer, Christoph M","orcid":"0000-0003-1216-9105","last_name":"Sommer"},{"orcid":"0000-0002-7667-6854","last_name":"Tavakoli","id":"3A0A06F4-F248-11E8-B48F-1D18A9856A87","first_name":"Mojtaba","full_name":"Tavakoli, Mojtaba"},{"full_name":"Agudelo Duenas, Nathalie","id":"40E7F008-F248-11E8-B48F-1D18A9856A87","first_name":"Nathalie","last_name":"Agudelo Duenas"},{"first_name":"Jakob","id":"937696FA-C996-11E9-8C7C-CF13E6697425","full_name":"Vorlaufer, Jakob","orcid":"0009-0000-7590-3501","last_name":"Vorlaufer"},{"full_name":"Jahr, Wiebke","first_name":"Wiebke","id":"425C1CE8-F248-11E8-B48F-1D18A9856A87","last_name":"Jahr","orcid":"0000-0003-0201-2315"},{"last_name":"Randuch","full_name":"Randuch, Marek","id":"6ac4636d-15b2-11ec-abd3-fb8df79972ae","first_name":"Marek"},{"full_name":"Johnson, Alexander J","id":"46A62C3A-F248-11E8-B48F-1D18A9856A87","first_name":"Alexander J","orcid":"0000-0002-2739-8843","last_name":"Johnson"},{"id":"38F4F166-F248-11E8-B48F-1D18A9856A87","first_name":"Eva","full_name":"Benková, Eva","last_name":"Benková","orcid":"0000-0002-8510-9739"},{"full_name":"Friml, Jiří","first_name":"Jiří","id":"4159519E-F248-11E8-B48F-1D18A9856A87","last_name":"Friml","orcid":"0000-0002-8302-7596"},{"first_name":"Johann G","id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87","full_name":"Danzl, Johann G","last_name":"Danzl","orcid":"0000-0001-8559-3973"}],"publication":"bioRxiv","oa_version":"Preprint","das_tickbox":"0","related_material":{"record":[{"status":"public","id":"19003","relation":"later_version"},{"relation":"dissertation_contains","status":"public","id":"18681"}]},"oa":1,"date_updated":"2026-10-02T11:27:43Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","date_created":"2024-12-19T12:28:00Z","department":[{"_id":"EvBe"},{"_id":"JoDa"},{"_id":"JiFr"}],"_id":"18689","ec_funded":1,"month":"02","license":"https://creativecommons.org/licenses/by-nc/4.0/","project":[{"name":"Tracing Evolution of Auxin Transport and Polarity in Plants","_id":"261099A6-B435-11E9-9278-68D0E5697425","grant_number":"742985","call_identifier":"H2020"},{"name":"International IST Doctoral Program","_id":"2564DBCA-B435-11E9-9278-68D0E5697425","grant_number":"665385","call_identifier":"H2020"},{"name":"ISTplus - Postdoctoral Fellowships","call_identifier":"H2020","grant_number":"754411","_id":"260C2330-B435-11E9-9278-68D0E5697425"},{"call_identifier":"FWF","grant_number":"W1232-B24","_id":"26AA4EF2-B435-11E9-9278-68D0E5697425","name":"Molecular Drug Targets"},{"grant_number":"ALTF 679-2018","_id":"269B5B22-B435-11E9-9278-68D0E5697425","name":"UltraX - achieving sub-nanometer resolution in light microscopy using iterative X10 microscopy in combination with nanobodies and STED"}],"status":"public","acknowledgement":"We gratefully acknowledge support by the Scientific Service Units at ISTA, including the Imaging and Optics and Lab Support facilities and the mechanical workshop and Library. We thank Philipp Velicky for STED microscope alignment.\r\n\r\nThis project has received funding from the Austrian Science Fund (FWF): I 3630-B25 (J.G.D) and the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (grant agreement No 742985, J.F.). It has also received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 665385. S.T. has received funding as an ISTplus Fellow from the European Union’s Horizon 2020 Research and Innovation Programme under Marie Skłodowska-Curie grant agreement no. 754411 and from an EMBO Long-Term Fellowship (grant number ALTF 679-2018). It has further received funding from the Austrian Science Fund (FWF) grant DK W1232 (M.T, N.A-D., J.G.D). W.J. received funding via a Human Frontier Science Program postdoctoral fellowship LT000557/2018.\r\n\r\nThe funders had no role in study design, data collection and analysis, decision to publish or preparation of the manuscript.","abstract":[{"text":"Multiplexed fluorescence microscopy imaging is widely used in biomedical applications. However, simultaneous imaging of multiple fluorophores can result in spectral leaks and overlapping, which greatly degrades image quality and subsequent analysis. Existing popular spectral unmixing methods are mainly based on computational intensive linear models and the performance is heavily dependent on the reference spectra, which may greatly preclude its further applications. In this paper, we propose a deep learning-based blindly spectral unmixing method, termed AutoUnmix, to imitate the physical spectral mixing process. A tranfer learning framework is further devised to allow our AutoUnmix adapting to a variety of imaging systems without retraining the network. Our proposed method has demonstrated real-time unmixing capabilities, surpassing existing methods by up to 100-fold in terms of unmixing speed. We further validate the reconstruction performance on both synthetic datasets and biological samples. The unmixing results of AutoUnmix achieve a highest SSIM of 0.99 in both three- and four-color imaging, with nearly up to 20% higher than other popular unmixing methods. Due to the desirable property of data independency and superior blind unmixing performance, we believe AutoUnmix is a powerful tool to study the interaction process of different organelles labeled by multiple fluorophores.","lang":"eng"}],"title":"Super-resolution expansion microscopy in plant roots","OA_place":"repository","publication_status":"draft","citation":{"ista":"Gallei MC, Truckenbrodt SM, Kreuzinger C, Inumella S, Vistunou V, Sommer CM, Tavakoli M, Agudelo Duenas N, Vorlaufer J, Jahr W, Randuch M, Johnson AJ, Benková E, Friml J, Danzl JG. Super-resolution expansion microscopy in plant roots. bioRxiv, <a href=\"https://doi.org/10.1101/2024.02.21.581330\">10.1101/2024.02.21.581330</a>.","ama":"Gallei MC, Truckenbrodt SM, Kreuzinger C, et al. Super-resolution expansion microscopy in plant roots. <i>bioRxiv</i>. doi:<a href=\"https://doi.org/10.1101/2024.02.21.581330\">10.1101/2024.02.21.581330</a>","mla":"Gallei, Michelle C., et al. “Super-Resolution Expansion Microscopy in Plant Roots.” <i>BioRxiv</i>, doi:<a href=\"https://doi.org/10.1101/2024.02.21.581330\">10.1101/2024.02.21.581330</a>.","chicago":"Gallei, Michelle C, Sven M Truckenbrodt, Caroline Kreuzinger, Syamala Inumella, Vitali Vistunou, Christoph M Sommer, Mojtaba Tavakoli, et al. “Super-Resolution Expansion Microscopy in Plant Roots.” <i>BioRxiv</i>, n.d. <a href=\"https://doi.org/10.1101/2024.02.21.581330\">https://doi.org/10.1101/2024.02.21.581330</a>.","apa":"Gallei, M. C., Truckenbrodt, S. M., Kreuzinger, C., Inumella, S., Vistunou, V., Sommer, C. M., … Danzl, J. G. (n.d.). Super-resolution expansion microscopy in plant roots. <i>bioRxiv</i>. <a href=\"https://doi.org/10.1101/2024.02.21.581330\">https://doi.org/10.1101/2024.02.21.581330</a>","short":"M.C. Gallei, S.M. Truckenbrodt, C. Kreuzinger, S. Inumella, V. Vistunou, C.M. Sommer, M. Tavakoli, N. Agudelo Duenas, J. Vorlaufer, W. Jahr, M. Randuch, A.J. Johnson, E. Benková, J. Friml, J.G. Danzl, BioRxiv (n.d.).","ieee":"M. C. Gallei <i>et al.</i>, “Super-resolution expansion microscopy in plant roots,” <i>bioRxiv</i>. ."},"tmp":{"name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)","short":"CC BY-NC (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","image":"/images/cc_by_nc.png"},"year":"2024","researchdata_availability":"no","doi":"10.1101/2024.02.21.581330"},{"file":[{"date_updated":"2024-12-20T10:31:37Z","file_id":"18699","creator":"mtavakol","file_name":"Thesis_Mojtaba Tavakoli_.docx","relation":"source_file","checksum":"b61651d417cafddd740a8528f46068c5","file_size":118593521,"content_type":"application/vnd.openxmlformats-officedocument.wordprocessingml.document","date_created":"2024-12-20T10:23:17Z","access_level":"closed"},{"date_created":"2024-12-20T10:25:12Z","content_type":"application/pdf","access_level":"closed","relation":"main_file","embargo_to":"open_access","checksum":"c80bcfd1a34c23afc3538052325283e5","file_size":63885521,"embargo":"2027-08-01","file_name":"Thesis_Mojtaba Tavakoli_.pdf","creator":"mtavakol","date_updated":"2026-07-28T08:33:51Z","file_id":"18700"}],"date_updated":"2026-10-02T11:27:43Z","das_tickbox":"1","related_material":{"record":[{"relation":"part_of_dissertation","id":"11160","status":"public"},{"relation":"part_of_dissertation","id":"18688","status":"public"},{"status":"public","id":"18689","relation":"part_of_dissertation"},{"relation":"part_of_dissertation","id":"18677","status":"public"}]},"file_date_updated":"2026-07-28T08:33:51Z","oa_version":"Published Version","OA_embargo":"20","month":"12","_id":"18681","department":[{"_id":"GradSch"},{"_id":"JoDa"}],"date_created":"2024-12-19T02:30:39Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","title":"Developing molecular and structural tools for studying brain architecture with super resolution expansion microscopy. LICONN: Molecularly-informed connectomics reconstruction with light microscopy","status":"public","project":[{"name":"Studying Organelle Structure and Function at Nanoscale Resolution with Expansion Microscopy","grant_number":"26137","_id":"6285a163-2b32-11ec-9570-8e204ca2dba5"},{"call_identifier":"FWF","grant_number":"W1232-B24","_id":"26AA4EF2-B435-11E9-9278-68D0E5697425","name":"Molecular Drug Targets"}],"publisher":"Institute of Science and Technology Austria","supervisor":[{"first_name":"Johann G","id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87","full_name":"Danzl, Johann G","last_name":"Danzl","orcid":"0000-0001-8559-3973"}],"license":"https://creativecommons.org/licenses/by-nc-nd/4.0/","doi":"10.15479/at:ista:18681","researchdata_availability":"unclear","tmp":{"image":"/images/cc_by_nc_nd.png","short":"CC BY-NC-ND (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)"},"year":"2024","OA_place":"publisher","citation":{"short":"M. Tavakoli, Developing Molecular and Structural Tools for Studying Brain Architecture with Super Resolution Expansion Microscopy. LICONN: Molecularly-Informed Connectomics Reconstruction with Light Microscopy, Institute of Science and Technology Austria, 2024.","ieee":"M. Tavakoli, “Developing molecular and structural tools for studying brain architecture with super resolution expansion microscopy. LICONN: Molecularly-informed connectomics reconstruction with light microscopy,” Institute of Science and Technology Austria, 2024.","chicago":"Tavakoli, Mojtaba. “Developing Molecular and Structural Tools for Studying Brain Architecture with Super Resolution Expansion Microscopy. LICONN: Molecularly-Informed Connectomics Reconstruction with Light Microscopy.” Institute of Science and Technology Austria, 2024. <a href=\"https://doi.org/10.15479/at:ista:18681\">https://doi.org/10.15479/at:ista:18681</a>.","apa":"Tavakoli, M. (2024). <i>Developing molecular and structural tools for studying brain architecture with super resolution expansion microscopy. LICONN: Molecularly-informed connectomics reconstruction with light microscopy</i>. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/at:ista:18681\">https://doi.org/10.15479/at:ista:18681</a>","ama":"Tavakoli M. Developing molecular and structural tools for studying brain architecture with super resolution expansion microscopy. LICONN: Molecularly-informed connectomics reconstruction with light microscopy. 2024. doi:<a href=\"https://doi.org/10.15479/at:ista:18681\">10.15479/at:ista:18681</a>","mla":"Tavakoli, Mojtaba. <i>Developing Molecular and Structural Tools for Studying Brain Architecture with Super Resolution Expansion Microscopy. LICONN: Molecularly-Informed Connectomics Reconstruction with Light Microscopy</i>. Institute of Science and Technology Austria, 2024, doi:<a href=\"https://doi.org/10.15479/at:ista:18681\">10.15479/at:ista:18681</a>.","ista":"Tavakoli M. 2024. Developing molecular and structural tools for studying brain architecture with super resolution expansion microscopy. LICONN: Molecularly-informed connectomics reconstruction with light microscopy. Institute of Science and Technology Austria."},"publication_status":"published","language":[{"iso":"eng"}],"date_published":"2024-12-20T00:00:00Z","alternative_title":["ISTA Thesis"],"degree_awarded":"PhD","ddc":["600","570"],"fulldoi":"https://doi.org/10.15479/at:ista:18681","has_accepted_license":"1","acknowledged_ssus":[{"_id":"Bio"},{"_id":"PreCl"},{"_id":"LifeSc"}],"article_processing_charge":"No","type":"dissertation","day":"20","author":[{"full_name":"Tavakoli, Mojtaba","first_name":"Mojtaba","id":"3A0A06F4-F248-11E8-B48F-1D18A9856A87","last_name":"Tavakoli","orcid":"0000-0002-7667-6854"}],"doi_confirm":"1","publication_identifier":{"isbn":["978-3-99078-048-0"],"issn":["2663-337X"]},"supplementarymaterial":"unclear","page":"230","corr_author":"1"},{"doi":"10.1101/2024.03.01.582884","tmp":{"image":"/images/cc_by_nc_nd.png","short":"CC BY-NC-ND (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)"},"year":"2024","researchdata_availability":"no","publication_status":"draft","OA_place":"repository","citation":{"ista":"Tavakoli M, Lyudchik J, Januszewski M, Vistunou V, Agudelo Duenas N, Vorlaufer J, Sommer CM, Kreuzinger C, Oliveira B, Cenameri A, Novarino G, Jain V, Danzl JG. Light-microscopy based dense connectomic reconstruction of mammalian brain tissue. bioRxiv, <a href=\"https://doi.org/10.1101/2024.03.01.582884\">10.1101/2024.03.01.582884</a>.","mla":"Tavakoli, Mojtaba, et al. “Light-Microscopy Based Dense Connectomic Reconstruction of Mammalian Brain Tissue.” <i>BioRxiv</i>, doi:<a href=\"https://doi.org/10.1101/2024.03.01.582884\">10.1101/2024.03.01.582884</a>.","ama":"Tavakoli M, Lyudchik J, Januszewski M, et al. Light-microscopy based dense connectomic reconstruction of mammalian brain tissue. <i>bioRxiv</i>. doi:<a href=\"https://doi.org/10.1101/2024.03.01.582884\">10.1101/2024.03.01.582884</a>","apa":"Tavakoli, M., Lyudchik, J., Januszewski, M., Vistunou, V., Agudelo Duenas, N., Vorlaufer, J., … Danzl, J. G. (n.d.). Light-microscopy based dense connectomic reconstruction of mammalian brain tissue. <i>bioRxiv</i>. <a href=\"https://doi.org/10.1101/2024.03.01.582884\">https://doi.org/10.1101/2024.03.01.582884</a>","chicago":"Tavakoli, Mojtaba, Julia Lyudchik, Michał Januszewski, Vitali Vistunou, Nathalie Agudelo Duenas, Jakob Vorlaufer, Christoph M Sommer, et al. “Light-Microscopy Based Dense Connectomic Reconstruction of Mammalian Brain Tissue.” <i>BioRxiv</i>, n.d. <a href=\"https://doi.org/10.1101/2024.03.01.582884\">https://doi.org/10.1101/2024.03.01.582884</a>.","ieee":"M. Tavakoli <i>et al.</i>, “Light-microscopy based dense connectomic reconstruction of mammalian brain tissue,” <i>bioRxiv</i>. .","short":"M. Tavakoli, J. Lyudchik, M. Januszewski, V. Vistunou, N. Agudelo Duenas, J. Vorlaufer, C.M. Sommer, C. Kreuzinger, B. Oliveira, A. Cenameri, G. Novarino, V. Jain, J.G. Danzl, BioRxiv (n.d.)."},"title":"Light-microscopy based dense connectomic reconstruction of mammalian brain tissue","abstract":[{"text":"The information-processing capability of the brain’s cellular network depends on the physical wiring pattern between neurons and their molecular and functional characteristics. Mapping neurons and resolving their individual synaptic connections can be achieved by volumetric imaging at nanoscale resolution with dense cellular labeling. Light microscopy is uniquely positioned to visualize specific molecules but dense, synapse-level circuit reconstruction by light microscopy has been out of reach due to limitations in resolution, contrast, and volumetric imaging capability. Here we developed light-microscopy based connectomics (LICONN). We integrated specifically engineered hydrogel embedding and expansion with comprehensive deep-learning based segmentation and analysis of connectivity, thus directly incorporating molecular information in synapse-level brain tissue reconstructions. LICONN will allow synapse-level brain tissue phenotyping in biological experiments in a readily adoptable manner.","lang":"eng"}],"acknowledgement":"We thank Sven Dorkenwald and Peter Li for critical reading of the\r\nmanuscript. We acknowledge expert support by ISTA’s scientific service units: Imaging and\r\nOptics, Lab Support, Scientific Computing, Preclinical Facility, Miba Machine Shop, and Library.\r\nWe gratefully acknowledge funding by the following sources:\r\nAustrian Science Fund (FWF) grant DK W1232 (JGD, MRT)\r\nAustrian Academy of Sciences DOC fellowship 26137 (MRT)\r\nEU Horizon 2020 program, Marie Skłodowska-Curie Actions Fellowship 665385 (JL)\r\nGesellschaft für Forschungsförderung NÖ (NFB) grant LSC18-022 (JGD)\r\nEuropean Union’s Horizon 2020 research and innovation programme, European Research\r\nCouncil (ERC) grant 101044865 “SecretAutism.”\r\n","project":[{"name":"Studying Organelle Structure and Function at Nanoscale Resolution with Expansion Microscopy","_id":"6285a163-2b32-11ec-9570-8e204ca2dba5","grant_number":"26137"},{"name":"International IST Doctoral Program","call_identifier":"H2020","_id":"2564DBCA-B435-11E9-9278-68D0E5697425","grant_number":"665385"},{"_id":"34ba8964-11ca-11ed-8bc3-e15864e7e9a6","grant_number":"101044865","name":"Toward an understanding of the brain interstitial system and the extracellular proteome in health and autism spectrum disorders"},{"call_identifier":"FWF","grant_number":"W1232-B24","_id":"26AA4EF2-B435-11E9-9278-68D0E5697425","name":"Molecular Drug Targets"}],"status":"public","month":"07","_id":"18677","ec_funded":1,"department":[{"_id":"GaNo"},{"_id":"JoDa"}],"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","date_created":"2024-12-18T14:48:24Z","oa":1,"date_updated":"2026-10-02T11:27:43Z","das_tickbox":"0","related_material":{"record":[{"id":"19704","status":"public","relation":"later_version"},{"status":"public","id":"18674","relation":"dissertation_contains"},{"relation":"dissertation_contains","id":"18681","status":"public"}]},"publication":"bioRxiv","oa_version":"Preprint","author":[{"last_name":"Tavakoli","orcid":"0000-0002-7667-6854","full_name":"Tavakoli, Mojtaba","first_name":"Mojtaba","id":"3A0A06F4-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Lyudchik","id":"46E28B80-F248-11E8-B48F-1D18A9856A87","first_name":"Julia","full_name":"Lyudchik, Julia"},{"first_name":"Michał","full_name":"Januszewski, Michał","last_name":"Januszewski"},{"last_name":"Vistunou","first_name":"Vitali","id":"7e146587-8972-11ed-ae7b-d7a32ea86a81","full_name":"Vistunou, Vitali"},{"last_name":"Agudelo Duenas","first_name":"Nathalie","id":"40E7F008-F248-11E8-B48F-1D18A9856A87","full_name":"Agudelo Duenas, Nathalie"},{"last_name":"Vorlaufer","orcid":"0009-0000-7590-3501","full_name":"Vorlaufer, Jakob","id":"937696FA-C996-11E9-8C7C-CF13E6697425","first_name":"Jakob"},{"id":"4DF26D8C-F248-11E8-B48F-1D18A9856A87","first_name":"Christoph M","full_name":"Sommer, Christoph M","orcid":"0000-0003-1216-9105","last_name":"Sommer"},{"id":"382077BA-F248-11E8-B48F-1D18A9856A87","first_name":"Caroline","full_name":"Kreuzinger, Caroline","last_name":"Kreuzinger"},{"last_name":"Oliveira","first_name":"Bárbara","id":"3B03AA1A-F248-11E8-B48F-1D18A9856A87","full_name":"Oliveira, Bárbara"},{"full_name":"Cenameri, Alban","first_name":"Alban","id":"9ac8f577-2357-11eb-997a-e566c5550886","last_name":"Cenameri"},{"id":"3E57A680-F248-11E8-B48F-1D18A9856A87","first_name":"Gaia","full_name":"Novarino, Gaia","orcid":"0000-0002-7673-7178","last_name":"Novarino"},{"full_name":"Jain, Viren","first_name":"Viren","last_name":"Jain"},{"last_name":"Danzl","orcid":"0000-0001-8559-3973","full_name":"Danzl, Johann G","id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87","first_name":"Johann G"}],"main_file_link":[{"url":"https://doi.org/10.1101/2024.03.01.582884","open_access":"1"}],"supplementarymaterial":"no","corr_author":"1","article_processing_charge":"No","acknowledged_ssus":[{"_id":"E-Lib"},{"_id":"M-Shop"},{"_id":"LifeSc"},{"_id":"Bio"},{"_id":"ScienComp"}],"type":"preprint","day":"08","fulldoi":"https://doi.org/10.1101/2024.03.01.582884","language":[{"iso":"eng"}],"date_published":"2024-07-08T00:00:00Z"},{"supplementarymaterial":"no","page":"161","corr_author":"1","doi_confirm":"1","author":[{"last_name":"Hassani","orcid":"0000-0001-6937-5773","id":"2AED110C-F248-11E8-B48F-1D18A9856A87","first_name":"Farid","full_name":"Hassani, Farid"}],"publication_identifier":{"issn":["2663-337X"],"isbn":["978-3-99078-040-4"]},"day":"11","article_processing_charge":"No","acknowledged_ssus":[{"_id":"NanoFab"},{"_id":"M-Shop"}],"type":"dissertation","fulldoi":"https://doi.org/10.15479/at:ista:17133","ddc":["530"],"degree_awarded":"PhD","has_accepted_license":"1","alternative_title":["ISTA Thesis"],"date_published":"2024-06-11T00:00:00Z","language":[{"iso":"eng"}],"keyword":["Quantum information","Qubits","Superconducting devices"],"year":"2024","tmp":{"name":"Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)","image":"/images/cc_by_nc_sa.png","short":"CC BY-NC-SA (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode"},"researchdata_availability":"no","citation":{"ieee":"F. Hassani, “Superconducting qubits capable of dynamic switching between protected and high-speed control regimes,” Institute of Science and Technology Austria, 2024.","short":"F. Hassani, Superconducting Qubits Capable of Dynamic Switching between Protected and High-Speed Control Regimes, Institute of Science and Technology Austria, 2024.","apa":"Hassani, F. (2024). <i>Superconducting qubits capable of dynamic switching between protected and high-speed control regimes</i>. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/at:ista:17133\">https://doi.org/10.15479/at:ista:17133</a>","chicago":"Hassani, Farid. “Superconducting Qubits Capable of Dynamic Switching between Protected and High-Speed Control Regimes.” Institute of Science and Technology Austria, 2024. <a href=\"https://doi.org/10.15479/at:ista:17133\">https://doi.org/10.15479/at:ista:17133</a>.","mla":"Hassani, Farid. <i>Superconducting Qubits Capable of Dynamic Switching between Protected and High-Speed Control Regimes</i>. Institute of Science and Technology Austria, 2024, doi:<a href=\"https://doi.org/10.15479/at:ista:17133\">10.15479/at:ista:17133</a>.","ama":"Hassani F. Superconducting qubits capable of dynamic switching between protected and high-speed control regimes. 2024. doi:<a href=\"https://doi.org/10.15479/at:ista:17133\">10.15479/at:ista:17133</a>","ista":"Hassani F. 2024. Superconducting qubits capable of dynamic switching between protected and high-speed control regimes. Institute of Science and Technology Austria."},"publication_status":"published","OA_place":"publisher","doi":"10.15479/at:ista:17133","publisher":"Institute of Science and Technology Austria","project":[{"name":"NOMIS Fellowship Program","_id":"9B861AAC-BA93-11EA-9121-9846C619BF3A"},{"grant_number":"F07105","_id":"bdb108fd-d553-11ed-ba76-83dc74a9864f","name":"QUANTUM INFORMATION SYSTEMS BEYOND CLASSICAL CAPABILITIES / P5- Integration of Superconducting Quantum Circuits"}],"status":"public","license":"https://creativecommons.org/licenses/by-nc-sa/4.0/","supervisor":[{"first_name":"Johannes M","id":"4B591CBA-F248-11E8-B48F-1D18A9856A87","full_name":"Fink, Johannes M","last_name":"Fink","orcid":"0000-0001-8112-028X"}],"abstract":[{"text":"An ideal quantum computer relies on qubits capable of performing fast gate operations and\r\nmaintaining strong interconnections while preserving their quantum coherence. Since the\r\ninception of experimental eforts toward building a quantum computer, the community has\r\nfaced challenges in engineering such a system. Among the various methods of implementing a\r\nquantum computer, superconducting qubits have shown fast gates close to tens of nanoseconds,\r\nwith the state-of-the-art reaching a coherence of a few milliseconds. However, achieving\r\nsimultaneously long lifetimes with fast qubit operations poses an inherent paradox. Qubits\r\nwith high coherence require isolation from the environment, while fast operation necessitates\r\nstrong coupling of the qubit. This thesis approaches this issue by proposing the idea of\r\nengineering superconducting qubits capable of transitioning between operating in a protected\r\nregime, where the qubit is completely isolated from the environment, and coupling to the\r\ncommunication channels as needed. In this direction, we use the geometric superinductor to\r\nscan the parameter space of rf-SQUID devices, searching for a regime where we can take the\r\nqubit protection to its extreme.\r\n\r\nThis leads us to the inductively shunted transmon (IST) regime, characterized by EJ /EC ≫ 1\r\nand EJ /EL ≫ 1, where the circuit potential exhibits a double well with a large barrier\r\nseparating the local ground states of each quantum well. In this regime, although it is\r\nanticipated that the two quantum wells would be isolated from each other, we observe single\r\nfuxon tunneling between them. The interplay of the cavity photons and the fuxon transition\r\nforms a rich physical system, containing resonance conditions that allow the preparation of the\r\nfuxon ground or excited states. This enables us to study the relaxation rate of such transition\r\nand show that it can be as large as 3.6 hours. Dynamically controlling the barrier height\r\nbetween the two quantum wells allows for controllable coupling, which scales exponentially,\r\nfor a qubit encoded in two fuxon states.\r\nThe 0-π qubit is one of the very few known superconducting circuit types that ofers exponential\r\nprotection from both relaxation and dephasing simultaneously. However, this qubit is not\r\nexempt from the fact that such protection comes at the expense of complex readout and\r\ncontrol. In this thesis, we propose a way to controllably break the circuit symmetry, the\r\nkey reason for the protection, to momentarily restore the ability to control and manipulate\r\nthe qubit. An asymmetry in capacitances and inductances in the 0-π circuit is detrimental\r\nsince they lead to coupling of the protected state to the thermally occupied parasitic mode\r\nof the circuit. However, here we try to exploit a controlled asymmetry in Josephson energies\r\nand show that this can be used as a tunable coupler between the protected states. In the\r\nfuture, this should allow to perform gate operations by dynamically controlling the asymmetry\r\ninstead of driving the protected transition with microwave pulses. Therefore, we believe that\r\nthe proposed method can make the use of protected qubits more practical in experimental\r\nrealizations of quantum computing.","lang":"eng"}],"title":"Superconducting qubits capable of dynamic switching between protected and high-speed control regimes","department":[{"_id":"GradSch"},{"_id":"JoFi"}],"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","date_created":"2024-06-11T18:20:05Z","month":"06","_id":"17133","file_date_updated":"2024-06-20T11:52:22Z","oa_version":"Published Version","oa":1,"file":[{"access_level":"open_access","date_created":"2024-06-12T07:53:19Z","content_type":"application/pdf","checksum":"258c353d47fa37ea63ea43b1e10a34a0","file_size":28370759,"relation":"main_file","file_name":"Thesis_main_final.pdf","creator":"fhassani","date_updated":"2024-06-20T11:52:22Z","file_id":"17137"},{"file_name":"Thesis_main.tex","creator":"fhassani","file_id":"17138","date_updated":"2024-06-12T07:54:27Z","access_level":"closed","date_created":"2024-06-12T07:54:27Z","content_type":"text/x-tex","file_size":445735,"checksum":"deffa5d0db88093f74812fa71520d5e1","relation":"source_file"}],"date_updated":"2026-10-02T11:28:17Z","das_tickbox":"0","related_material":{"record":[{"id":"13227","status":"public","relation":"part_of_dissertation"},{"id":"9928","status":"public","relation":"part_of_dissertation"},{"relation":"part_of_dissertation","id":"8755","status":"public"}]}},{"_id":"14852","DOAJ_listed":"1","dataavailabilitystatement":"Raw MUSE data cubes are available from the ESO Science Archive Facility.2 The MUSE-Wide data from the first data release, which covers 44 fields in GOODS-S/CDFS, are available on the MUSE-Wide project page.3 The MUSE HUDF data from the second data release are available via the Advanced MUSE Data products (AMUSED) web interface.4 The stacked spectra in a machine-readable format and the spectral line measurements will be shared upon request to the corresponding author.","month":"02","date_created":"2024-01-22T08:22:17Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","department":[{"_id":"GradSch"},{"_id":"JoMa"}],"article_type":"original","das_tickbox":"1","date_updated":"2026-10-02T11:29:18Z","file":[{"content_type":"application/pdf","date_created":"2024-01-23T12:30:45Z","access_level":"open_access","relation":"main_file","file_size":4521738,"checksum":"9d02df4035c4951cf63dee0db1e462e9","file_name":"2024_MNAstronomSoc_Kramarenko.pdf","creator":"dernst","file_id":"14879","date_updated":"2024-01-23T12:30:45Z","success":1}],"isi":1,"oa":1,"publication":"Monthly Notices of the Royal Astronomical Society","oa_version":"Published Version","file_date_updated":"2024-01-23T12:30:45Z","intvolume":"       527","doi":"10.1093/mnras/stad3853","citation":{"short":"I. Kramarenko, J. Kerutt, A. Verhamme, P.A. Oesch, L. Barrufet, J.J. Matthee, H. Kusakabe, I. Goovaerts, T.T. Thai, Monthly Notices of the Royal Astronomical Society 527 (2024) 9853–9871.","ieee":"I. Kramarenko <i>et al.</i>, “Linking UV spectral properties of MUSE Ly α emitters at <i>z</i> ≳ 3 to Lyman continuum escape,” <i>Monthly Notices of the Royal Astronomical Society</i>, vol. 527, no. 4. Oxford University Press, pp. 9853–9871, 2024.","chicago":"Kramarenko, Ivan, J Kerutt, A Verhamme, P A Oesch, L Barrufet, Jorryt J Matthee, H Kusakabe, I Goovaerts, and T T Thai. “Linking UV Spectral Properties of MUSE Ly α Emitters at <i>z</i> ≳ 3 to Lyman Continuum Escape.” <i>Monthly Notices of the Royal Astronomical Society</i>. Oxford University Press, 2024. <a href=\"https://doi.org/10.1093/mnras/stad3853\">https://doi.org/10.1093/mnras/stad3853</a>.","apa":"Kramarenko, I., Kerutt, J., Verhamme, A., Oesch, P. A., Barrufet, L., Matthee, J. J., … Thai, T. T. (2024). Linking UV spectral properties of MUSE Ly α emitters at <i>z</i> ≳ 3 to Lyman continuum escape. <i>Monthly Notices of the Royal Astronomical Society</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/mnras/stad3853\">https://doi.org/10.1093/mnras/stad3853</a>","ama":"Kramarenko I, Kerutt J, Verhamme A, et al. Linking UV spectral properties of MUSE Ly α emitters at <i>z</i> ≳ 3 to Lyman continuum escape. <i>Monthly Notices of the Royal Astronomical Society</i>. 2024;527(4):9853-9871. doi:<a href=\"https://doi.org/10.1093/mnras/stad3853\">10.1093/mnras/stad3853</a>","mla":"Kramarenko, Ivan, et al. “Linking UV Spectral Properties of MUSE Ly α Emitters at <i>z</i> ≳ 3 to Lyman Continuum Escape.” <i>Monthly Notices of the Royal Astronomical Society</i>, vol. 527, no. 4, Oxford University Press, 2024, pp. 9853–71, doi:<a href=\"https://doi.org/10.1093/mnras/stad3853\">10.1093/mnras/stad3853</a>.","ista":"Kramarenko I, Kerutt J, Verhamme A, Oesch PA, Barrufet L, Matthee JJ, Kusakabe H, Goovaerts I, Thai TT. 2024. Linking UV spectral properties of MUSE Ly α emitters at <i>z</i> ≳ 3 to Lyman continuum escape. Monthly Notices of the Royal Astronomical Society. 527(4), 9853–9871."},"publication_status":"published","volume":527,"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"year":"2024","researchdata_availability":"upon request","acknowledgement":"We thank the anonymous referee for the constructive feedback that helped to improve the manuscript. We thank Michael Maseda, Daniel Schaerer, Charlotte Simmonds, and Rashmi Gottumukkala for useful comments and productive discussions. We also thank the organizers and participants of the 24th MUSE Science Busy Week in Leiden. IGK acknowledges an Excellence Master Fellowship granted by the Faculty of Science of the University of Geneva. This work has received funding from the Swiss State Secretariat for Education, Research and Innovation (SERI) under contract number MB22.00072, as well as from the Swiss National Science Foundation (SNSF) through project grant number 200020_207349 and SNSF Professorship grant number 190079. The Cosmic Dawn Center (DAWN) is funded by the Danish National Research Foundation under grant number 140. This paper is based on observations collected at the European Organisation for Astronomical Research in the Southern Hemisphere under ESO programmes 094.A-0289(B), 095.A-0010(A), 096.A-0045(A), 096.A-0045(B), 094.A-0205, 095.A-0240, 096.A-0090, 097.A-0160, and 098.A-0017. We made extensive use of several open-source software packages and we are thankful to the respective authors for sharing their work: NUMPY (Harris et al. 2020), ASTROPY (Astropy Collaboration 2022), MATPLOTLIB (Hunter 2007), IPYTHON (Perez & Granger 2007), and TOPCAT (Taylor 2005).","title":"Linking UV spectral properties of MUSE Ly α emitters at <i>z</i> ≳ 3 to Lyman continuum escape","abstract":[{"lang":"eng","text":"The physical conditions giving rise to high escape fractions of ionizing radiation (LyC fesc) in star-forming galaxies – most likely protagonists of cosmic reionization – are not yet fully understood. Using the VLT/MUSE observations of ∼1400 Ly α emitters at 2.9 &amp;lt; z &amp;lt; 6.7, we compare stacked rest-frame UV spectra of candidates for LyC leakers and non-leakers selected based on their Ly α profiles. We find that the stacks of potential LyC leakers, i.e. galaxies with narrow, symmetric Ly α profiles with small peak separation, generally show (i) strong nebular O iii]λ1666, [Si iii]λ1883, and [C iii]λ1907 +C iii]λ1909 emission, indicating a high-ionization state of the interstellar medium (ISM); (ii) high equivalent widths of He iiλ1640 (∼1 − 3 Å), suggesting the presence of hard ionizing radiation fields; (iii) Si ii*λ1533 emission, revealing substantial amounts of neutral hydrogen off the line of sight; (iv) high C ivλλ1548,1550 to [C iii]λ1907 +C iii]λ1909 ratios (C iv/C iii] ≳0.75) , signalling the presence of low column density channels in the ISM. In contrast, the stacks with broad, asymmetric Ly α profiles with large peak separation show weak nebular emission lines, low He iiλ1640 equivalent widths (≲1 Å), and low C iv/C iii] (≲0.25), implying low-ionization states and high-neutral hydrogen column densities. Our results suggest that C iv/C iii] might be sensitive to the physical conditions that govern LyC photon escape, providing a promising tool for identification of ionizing sources among star-forming galaxies in the epoch of reionization."}],"quality_controlled":"1","status":"public","issue":"4","publisher":"Oxford University Press","has_accepted_license":"1","ddc":["520"],"fulldoi":"https://doi.org/10.1093/mnras/stad3853","keyword":["Space and Planetary Science","Astronomy and Astrophysics"],"language":[{"iso":"eng"}],"date_published":"2024-02-01T00:00:00Z","external_id":{"arxiv":["2305.07044"],"isi":["001133672400004"]},"arxiv":1,"publication_identifier":{"issn":["0035-8711"],"eissn":["1365-2966"]},"scopus_import":"1","author":[{"first_name":"Ivan","id":"9a9394cb-3200-11ee-973b-f5ba2a8b16e4","full_name":"Kramarenko, Ivan","orcid":"0000-0001-5346-6048","last_name":"Kramarenko"},{"full_name":"Kerutt, J","first_name":"J","last_name":"Kerutt"},{"first_name":"A","full_name":"Verhamme, A","last_name":"Verhamme"},{"full_name":"Oesch, P A","first_name":"P A","last_name":"Oesch"},{"last_name":"Barrufet","first_name":"L","full_name":"Barrufet, L"},{"id":"7439a258-f3c0-11ec-9501-9df22fe06720","first_name":"Jorryt J","full_name":"Matthee, Jorryt J","last_name":"Matthee","orcid":"0000-0003-2871-127X"},{"first_name":"H","full_name":"Kusakabe, H","last_name":"Kusakabe"},{"first_name":"I","full_name":"Goovaerts, I","last_name":"Goovaerts"},{"full_name":"Thai, T T","first_name":"T T","last_name":"Thai"}],"corr_author":"1","page":"9853-9871","supplementarymaterial":"no","type":"journal_article","article_processing_charge":"Yes","day":"01"},{"publisher":"Institute for Operations Research and the Management Sciences","project":[{"call_identifier":"H2020","_id":"0599E47C-7A3F-11EA-A408-12923DDC885E","grant_number":"863818","name":"Formal Methods for Stochastic Models: Algorithms and Applications"}],"status":"public","issue":"4","quality_controlled":"1","abstract":[{"text":"Matrix games are the most basic model in game theory, and yet robustness with respect to small perturbations of the matrix entries is not fully understood. In this paper, we introduce value positivity and uniform value positivity, two properties that refine the notion of optimality in the context of polynomially perturbed matrix games. The first concept captures how the value depends on the perturbation parameter, and the second consists of the existence of a fixed strategy that guarantees the value of the unperturbed matrix game for every sufficiently small positive parameter. We provide polynomial-time algorithms to check whether a polynomially perturbed matrix game satisfies these properties. We further provide the functional form for a parameterized optimal strategy and the value function. Finally, we translate our results to linear programming and stochastic games, where value positivity is related to the existence of robust solutions.","lang":"eng"}],"title":"Value-positivity for matrix games","acknowledgement":"This research was supported by Fondation CFM pour la Recherche, the H2020 European Research Council [Grant ERC-CoG-863818 (ForM-SMArt)], the Austrian Science Fund [Grant 10.55776/COE12], ANID Chile [Grant ACT210005], and Agence Nationale de la Recherche [Grant ANR-21-CE40-0020].","researchdata_availability":"unclear","volume":50,"year":"2024","publication_status":"published","citation":{"ista":"Chatterjee K, Oliu-Barton M, Saona Urmeneta RJ. 2024. Value-positivity for matrix games. Mathematics of Operations Research. 50(4), 2433–3282.","mla":"Chatterjee, Krishnendu, et al. “Value-Positivity for Matrix Games.” <i>Mathematics of Operations Research</i>, vol. 50, no. 4, Institute for Operations Research and the Management Sciences, 2024, pp. 2433–3282, doi:<a href=\"https://doi.org/10.1287/moor.2022.0332\">10.1287/moor.2022.0332</a>.","ama":"Chatterjee K, Oliu-Barton M, Saona Urmeneta RJ. Value-positivity for matrix games. <i>Mathematics of Operations Research</i>. 2024;50(4):2433-3282. doi:<a href=\"https://doi.org/10.1287/moor.2022.0332\">10.1287/moor.2022.0332</a>","apa":"Chatterjee, K., Oliu-Barton, M., &#38; Saona Urmeneta, R. J. (2024). Value-positivity for matrix games. <i>Mathematics of Operations Research</i>. Institute for Operations Research and the Management Sciences. <a href=\"https://doi.org/10.1287/moor.2022.0332\">https://doi.org/10.1287/moor.2022.0332</a>","chicago":"Chatterjee, Krishnendu, Miquel Oliu-Barton, and Raimundo J Saona Urmeneta. “Value-Positivity for Matrix Games.” <i>Mathematics of Operations Research</i>. Institute for Operations Research and the Management Sciences, 2024. <a href=\"https://doi.org/10.1287/moor.2022.0332\">https://doi.org/10.1287/moor.2022.0332</a>.","ieee":"K. Chatterjee, M. Oliu-Barton, and R. J. Saona Urmeneta, “Value-positivity for matrix games,” <i>Mathematics of Operations Research</i>, vol. 50, no. 4. Institute for Operations Research and the Management Sciences, pp. 2433–3282, 2024.","short":"K. Chatterjee, M. Oliu-Barton, R.J. Saona Urmeneta, Mathematics of Operations Research 50 (2024) 2433–3282."},"OA_type":"closed access","doi":"10.1287/moor.2022.0332","intvolume":"        50","publication":"Mathematics of Operations Research","oa_version":"None","isi":1,"date_updated":"2026-10-02T11:30:08Z","related_material":{"record":[{"relation":"dissertation_contains","status":"public","id":"20234"}]},"das_tickbox":"0","article_type":"original","department":[{"_id":"GradSch"},{"_id":"KrCh"}],"date_created":"2024-10-09T07:02:20Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","month":"10","_id":"18266","ec_funded":1,"day":"01","article_processing_charge":"No","type":"journal_article","supplementarymaterial":"unclear","corr_author":"1","page":"2433-3282","author":[{"full_name":"Chatterjee, Krishnendu","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","first_name":"Krishnendu","orcid":"0000-0002-4561-241X","last_name":"Chatterjee"},{"last_name":"Oliu-Barton","full_name":"Oliu-Barton, Miquel","first_name":"Miquel"},{"orcid":"0000-0001-5103-038X","last_name":"Saona Urmeneta","id":"BD1DF4C4-D767-11E9-B658-BC13E6697425","first_name":"Raimundo J","full_name":"Saona Urmeneta, Raimundo J"}],"publication_identifier":{"eissn":["1526-5471"],"issn":["0364-765X"]},"scopus_import":"1","date_published":"2024-10-01T00:00:00Z","external_id":{"isi":["001328875900001"]},"language":[{"iso":"eng"}],"fulldoi":"https://doi.org/10.1287/moor.2022.0332"},{"article_number":"2450007","corr_author":"1","supplementarymaterial":"unclear","scopus_import":"1","publication_identifier":{"eissn":["2010-3271"],"issn":["2010-3263"]},"main_file_link":[{"url":" https://doi.org/10.48550/arXiv.2212.14638","open_access":"1"}],"author":[{"id":"D5C6A458-10C4-11EA-ABF4-A4B43DDC885E","first_name":"Guillaume","full_name":"Dubach, Guillaume","orcid":"0000-0001-6892-8137","last_name":"Dubach"},{"first_name":"Jana","id":"e796e4f9-dc8d-11ea-abe3-97e26a0323e9","full_name":"Reker, Jana","last_name":"Reker"}],"day":"01","type":"journal_article","article_processing_charge":"No","fulldoi":"https://doi.org/10.1142/s2010326324500072","external_id":{"arxiv":["2212.14638"],"isi":["001229295200002"]},"date_published":"2024-04-01T00:00:00Z","arxiv":1,"language":[{"iso":"eng"}],"OA_place":"repository","citation":{"short":"G. Dubach, J. Reker, Random Matrices: Theory and Applications 13 (2024).","ieee":"G. Dubach and J. Reker, “Dynamics of a rank-one multiplicative perturbation of a unitary matrix,” <i>Random Matrices: Theory and Applications</i>, vol. 13, no. 2. World Scientific Publishing, 2024.","chicago":"Dubach, Guillaume, and Jana Reker. “Dynamics of a Rank-One Multiplicative Perturbation of a Unitary Matrix.” <i>Random Matrices: Theory and Applications</i>. World Scientific Publishing, 2024. <a href=\"https://doi.org/10.1142/s2010326324500072\">https://doi.org/10.1142/s2010326324500072</a>.","apa":"Dubach, G., &#38; Reker, J. (2024). Dynamics of a rank-one multiplicative perturbation of a unitary matrix. <i>Random Matrices: Theory and Applications</i>. World Scientific Publishing. <a href=\"https://doi.org/10.1142/s2010326324500072\">https://doi.org/10.1142/s2010326324500072</a>","ama":"Dubach G, Reker J. Dynamics of a rank-one multiplicative perturbation of a unitary matrix. <i>Random Matrices: Theory and Applications</i>. 2024;13(2). doi:<a href=\"https://doi.org/10.1142/s2010326324500072\">10.1142/s2010326324500072</a>","mla":"Dubach, Guillaume, and Jana Reker. “Dynamics of a Rank-One Multiplicative Perturbation of a Unitary Matrix.” <i>Random Matrices: Theory and Applications</i>, vol. 13, no. 2, 2450007, World Scientific Publishing, 2024, doi:<a href=\"https://doi.org/10.1142/s2010326324500072\">10.1142/s2010326324500072</a>.","ista":"Dubach G, Reker J. 2024. Dynamics of a rank-one multiplicative perturbation of a unitary matrix. Random Matrices: Theory and Applications. 13(2), 2450007."},"publication_status":"published","year":"2024","volume":13,"researchdata_availability":"unclear","doi":"10.1142/s2010326324500072","OA_type":"green","quality_controlled":"1","project":[{"_id":"62796744-2b32-11ec-9570-940b20777f1d","grant_number":"101020331","call_identifier":"H2020","name":"Random matrices beyond Wigner-Dyson-Mehta"}],"publisher":"World Scientific Publishing","status":"public","issue":"2","abstract":[{"lang":"eng","text":"We provide a dynamical study of a model of multiplicative perturbation of a unitary matrix introduced by Fyodorov. In particular, we identify a flow of deterministic domains that bound the spectrum with high probability, separating the outlier from the typical eigenvalues at all sub-critical timescales. These results are obtained under generic assumptions on U that hold for a variety of unitary random matrix models."}],"title":"Dynamics of a rank-one multiplicative perturbation of a unitary matrix","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","date_created":"2024-05-23T08:31:57Z","article_type":"original","department":[{"_id":"GradSch"},{"_id":"LaEr"}],"_id":"17047","ec_funded":1,"month":"04","oa_version":"Preprint","publication":"Random Matrices: Theory and Applications","intvolume":"        13","related_material":{"record":[{"status":"public","id":"17164","relation":"dissertation_contains"}]},"das_tickbox":"0","oa":1,"isi":1,"date_updated":"2026-10-02T11:31:29Z"},{"author":[{"first_name":"Peter","id":"d64d6a8d-eb8e-11eb-b029-96fd216dec3c","full_name":"Súkeník, Peter","last_name":"Súkeník"},{"full_name":"Lampert, Christoph","first_name":"Christoph","id":"40C20FD2-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8622-7887","last_name":"Lampert"},{"orcid":"0000-0002-3242-7020","last_name":"Mondelli","full_name":"Mondelli, Marco","id":"27EB676C-8706-11E9-9510-7717E6697425","first_name":"Marco"}],"supplementarymaterial":"no","corr_author":"1","acknowledged_ssus":[{"_id":"ScienComp"}],"article_processing_charge":"No","type":"conference","day":"01","ddc":["000"],"has_accepted_license":"1","language":[{"iso":"eng"}],"arxiv":1,"external_id":{"arxiv":["2405.14468"]},"date_published":"2024-12-01T00:00:00Z","alternative_title":["Advances in Neural Information Processing Systems"],"OA_type":"gold","researchdata_availability":"no","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"volume":37,"year":"2024","publication_status":"published","OA_place":"publisher","citation":{"mla":"Súkeník, Peter, et al. “Neural Collapse versus Low-Rank Bias: Is Deep Neural Collapse Really Optimal?” <i>38th Annual Conference on Neural Information Processing Systems</i>, vol. 37, Neural Information Processing Systems Foundation, 2024.","ama":"Súkeník P, Lampert C, Mondelli M. Neural collapse versus low-rank bias: Is deep neural collapse really optimal? In: <i>38th Annual Conference on Neural Information Processing Systems</i>. Vol 37. Neural Information Processing Systems Foundation; 2024.","ista":"Súkeník P, Lampert C, Mondelli M. 2024. Neural collapse versus low-rank bias: Is deep neural collapse really optimal? 38th Annual Conference on Neural Information Processing Systems. NeurIPS: Neural Information Processing Systems, Advances in Neural Information Processing Systems, vol. 37.","ieee":"P. Súkeník, C. Lampert, and M. Mondelli, “Neural collapse versus low-rank bias: Is deep neural collapse really optimal?,” in <i>38th Annual Conference on Neural Information Processing Systems</i>, Vancouver, Canada, 2024, vol. 37.","short":"P. Súkeník, C. Lampert, M. Mondelli, in:, 38th Annual Conference on Neural Information Processing Systems, Neural Information Processing Systems Foundation, 2024.","apa":"Súkeník, P., Lampert, C., &#38; Mondelli, M. (2024). Neural collapse versus low-rank bias: Is deep neural collapse really optimal? In <i>38th Annual Conference on Neural Information Processing Systems</i> (Vol. 37). Vancouver, Canada: Neural Information Processing Systems Foundation.","chicago":"Súkeník, Peter, Christoph Lampert, and Marco Mondelli. “Neural Collapse versus Low-Rank Bias: Is Deep Neural Collapse Really Optimal?” In <i>38th Annual Conference on Neural Information Processing Systems</i>, Vol. 37. Neural Information Processing Systems Foundation, 2024."},"title":"Neural collapse versus low-rank bias: Is deep neural collapse really optimal?","abstract":[{"lang":"eng","text":"Deep neural networks (DNNs) exhibit a surprising structure in their final layer\r\nknown as neural collapse (NC), and a growing body of works has currently investigated the propagation of neural collapse to earlier layers of DNNs – a phenomenon\r\ncalled deep neural collapse (DNC). However, existing theoretical results are restricted to special cases: linear models, only two layers or binary classification.\r\nIn contrast, we focus on non-linear models of arbitrary depth in multi-class classification and reveal a surprising qualitative shift. As soon as we go beyond two\r\nlayers or two classes, DNC stops being optimal for the deep unconstrained features\r\nmodel (DUFM) – the standard theoretical framework for the analysis of collapse.\r\nThe main culprit is a low-rank bias of multi-layer regularization schemes: this bias\r\nleads to optimal solutions of even lower rank than the neural collapse. We support\r\nour theoretical findings with experiments on both DUFM and real data, which show\r\nthe emergence of the low-rank structure in the solution found by gradient descent."}],"acknowledgement":"Marco Mondelli is partially supported by the 2019 Lopez-Loreta prize. This research was supported by the Scientific Service Units (SSU) of ISTA through resources provided by Scientific Computing (SciComp).","status":"public","project":[{"_id":"059876FA-7A3F-11EA-A408-12923DDC885E","name":"Prix Lopez-Loretta 2019 - Marco Mondelli"}],"publisher":"Neural Information Processing Systems Foundation","quality_controlled":"1","month":"12","_id":"18891","conference":{"start_date":"2024-12-16","location":"Vancouver, Canada","end_date":"2024-12-16","name":"NeurIPS: Neural Information Processing Systems"},"department":[{"_id":"GradSch"},{"_id":"MaMo"},{"_id":"ChLa"}],"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","date_created":"2025-01-27T11:15:18Z","date_updated":"2026-10-02T11:34:35Z","file":[{"access_level":"open_access","content_type":"application/pdf","date_created":"2025-02-04T08:11:25Z","checksum":"b7b79f1ea3ac1e9e11b3d91faaeb0780","file_size":1784118,"relation":"main_file","file_name":"2024_NeurIPS_Sukenik.pdf","creator":"dernst","date_updated":"2025-02-04T08:11:25Z","file_id":"18989","success":1}],"oa":1,"das_tickbox":"0","file_date_updated":"2025-02-04T08:11:25Z","intvolume":"        37","publication":"38th Annual Conference on Neural Information Processing Systems","oa_version":"Published Version"},{"publication_status":"published","citation":{"short":"P. Surendranadh, Effect of Population Structure on Neutral Genetic Variation and Barriers to Gene Exchange, Institute of Science and Technology Austria, 2024.","ieee":"P. Surendranadh, “Effect of population structure on neutral genetic variation and barriers to gene exchange,” Institute of Science and Technology Austria, 2024.","chicago":"Surendranadh, Parvathy. “Effect of Population Structure on Neutral Genetic Variation and Barriers to Gene Exchange.” Institute of Science and Technology Austria, 2024. <a href=\"https://doi.org/10.15479/at:ista:18515\">https://doi.org/10.15479/at:ista:18515</a>.","apa":"Surendranadh, P. (2024). <i>Effect of population structure on neutral genetic variation and barriers to gene exchange</i>. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/at:ista:18515\">https://doi.org/10.15479/at:ista:18515</a>","ama":"Surendranadh P. Effect of population structure on neutral genetic variation and barriers to gene exchange. 2024. doi:<a href=\"https://doi.org/10.15479/at:ista:18515\">10.15479/at:ista:18515</a>","mla":"Surendranadh, Parvathy. <i>Effect of Population Structure on Neutral Genetic Variation and Barriers to Gene Exchange</i>. Institute of Science and Technology Austria, 2024, doi:<a href=\"https://doi.org/10.15479/at:ista:18515\">10.15479/at:ista:18515</a>.","ista":"Surendranadh P. 2024. Effect of population structure on neutral genetic variation and barriers to gene exchange. Institute of Science and Technology Austria."},"OA_place":"publisher","researchdata_availability":"yes","tmp":{"name":"Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)","image":"/images/cc_by_nc_sa.png","short":"CC BY-NC-SA (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode"},"year":"2024","doi":"10.15479/at:ista:18515","OA_type":"gold","supervisor":[{"first_name":"Nicholas H","id":"4880FE40-F248-11E8-B48F-1D18A9856A87","full_name":"Barton, Nicholas H","last_name":"Barton","orcid":"0000-0002-8548-5240"}],"status":"public","project":[{"grant_number":"P32166","_id":"05959E1C-7A3F-11EA-A408-12923DDC885E","name":"Snapdragon Speciation"},{"grant_number":"101055327","_id":"bd6958e0-d553-11ed-ba76-86eba6a76c00","name":"Understanding the evolution of continuous genomes"}],"publisher":"Institute of Science and Technology Austria","acknowledgement":"I also acknowledge the funding agencies Marie Curie COFUND Doctoral Fellowship,\r\nAustrian Science Fund FWF (grant P32166) and ERC (grant PR1000ERC02) for financially\r\nsupporting my research over the years.","title":"Effect of population structure on neutral genetic variation and barriers to gene exchange","abstract":[{"lang":"eng","text":"Understanding the role of evolutionary processes in shaping genetic variation has been a\r\nprimary goal in evolutionary genetics. In this regard, a key question is how genetically\r\ndistinct populations evolve in the face of gene flow, thereby generating genetic and\r\nphenotypic divergence and reproductive isolation (RI). This requires quantifying the role\r\nand relative contributions of prezygotic and postzygotic isolating mechanisms on the\r\nreduction of gene exchange between populations, and identifying regions in the genome\r\nthat mediate RI, which is often polygenic. Further, this needs distinguishing neutral and\r\nselected regions in the genome, and discerning how selection influences patterns of neutral\r\ndivergence.\r\nPopulation structure, defined as any deviation from panmixia, such as geographic distribution, movement and mating patterns of individuals, influences how genetic variation is\r\nstructured in space and shapes the neutral null model. Availability of large scale spatial\r\ngenomic datasets now enables us to detect signatures of population structure in genetic\r\ndata and infer population genetic parameters. Such inferences are crucial and have wide\r\napplications in biodiversity, conservation genetics, population management and medical\r\ngenetics. However, inferences are based on assumptions that do not always match the\r\ncomplex reality, thus leading to erroneous conclusions. Moreover, the role and interaction\r\nof heterogeneous population density and dispersal, which are ubiquitous in nature, has\r\nbeen challenging to study owing to their mathematical complexity. In such scenarios,\r\nfeedback between theory, data and simulations can prove to be useful.\r\nIn this thesis, I examine the effect of population structure on neutral genetic variation\r\nand barriers to gene exchange in hybridising populations, thereby bridging together the\r\nfields of spatial population genetics and speciation.\r\nDespite being a key concept in speciation, reproductive isolation (RI) lacks a quantitative\r\ndefinition and has been used and measured differently across different fields. Chapter 2\r\ngives a quantitative definition of RI, in terms of the effect of genetic differences on gene\r\nflow. We give analytical predictions for RI in a range of scenarios, in terms of effective migration rates for discrete populations and barrier strength for continuous populations.\r\nIn addition to this, we discuss current measures of RI and their limitations, and propose\r\nthe need for new measures that combine organismal and genetic perspectives of RI.\r\nIn chapter 3, I examine the combined effect of assortative mating, sexual selection\r\nand viability selection on RI. For this, we consider a polygenic ‘magic’ trait under a\r\nmainland-island model. We obtain novel theoretical predictions for molecular divergence\r\nin terms of effective migration rates, which bears a simple relationship to measurable\r\nfitness components of migrants and various early generation hybrids. We explore the\r\nconditions under which local adaptation can be maintained despite maladaptive gene flow\r\nand quantify the relative contributions of viability and sexual selection to genome-wide\r\nbarriers to gene flow.\r\nThe next two chapters of the thesis focus on a hybrid zone of Antirrhinum majus that\r\nconsist of two subspecies- the magenta flowered A. m. pseudomajus and the yellow\r\nflowered A.m. striatum. Previous studies have suggested that flower colour is target of\r\npollinator mediated selection and is influenced only by few genes. While these regions\r\nshow high genetic differentiation between the subspecies, the rest of the genome is seen\r\nto be well mixed. Chapter 4 examines the effects of heterogeneous population density\r\nand leptokurtic dispersal on isolation by distance and the distribution of heterozygosity\r\nby focusing on non-flower colour markers.\r\nChapter 5 analyses cline shapes and associations among 6 focal flower colour markers to\r\nunderstand how selection and dispersal maintain this hybrid zone. We see sharp coincident\r\nstepped clines at all loci and positive associations throughout the hybrid zone, contrary to\r\nthe expected patterns from diffusive gene flow. With a novel scheme of inferring dispersal\r\ncombined with multilocus simulations, we show that stepped clines do not reflect genetic\r\nbarriers to gene flow, but are rather a result of long-distance migration. This framework\r\nallows us to get realistic estimates gene flow and selection and shows how traditional cline\r\nanalysis may lead to inaccurate conclusions when assumptions of the theory are not met.\r\nOverall, this thesis investigates how different features of population structure leave\r\ndetectable signatures in genetic variation, namely in patterns of isolation by distance,\r\nlinkage disequilibrium and genetic divergence. It also highlights how effective migration\r\nrates provide useful way of analysing polygenic architectures and shed new light into\r\nhybrid zones. In doing so, I identify scenarios when simple models become insufficient\r\nand suggest possibe directions by combining genetic data with simulations."}],"date_created":"2024-11-06T21:25:37Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","department":[{"_id":"GradSch"},{"_id":"NiBa"}],"_id":"18515","month":"11","oa_version":"Published Version","file_date_updated":"2024-11-07T10:59:42Z","das_tickbox":"1","date_updated":"2026-10-02T11:36:48Z","file":[{"access_level":"open_access","date_created":"2024-11-07T10:59:29Z","content_type":"application/pdf","checksum":"c32cf7bc75748d9c551d8eb70178bbec","file_size":37019760,"relation":"main_file","file_name":"PhD_Thesis__Parvathy_071124_PDFA.pdf","creator":"psurendr","success":1,"file_id":"18519","date_updated":"2024-11-07T10:59:29Z"},{"file_id":"18520","date_updated":"2024-11-07T10:59:42Z","creator":"psurendr","file_name":"PhD Thesis- Parvathy_071124.zip","file_size":41198857,"checksum":"4417e02d54084d89e75734e18caaa96d","relation":"source_file","access_level":"closed","content_type":"application/zip","date_created":"2024-11-07T10:59:42Z"}],"oa":1,"corr_author":"1","page":"219","supplementarymaterial":"no","publication_identifier":{"issn":["2663-337X"]},"author":[{"orcid":"0000-0001-6395-386X","last_name":"Surendranadh","full_name":"Surendranadh, Parvathy","first_name":"Parvathy","id":"455235B8-F248-11E8-B48F-1D18A9856A87"}],"doi_confirm":"1","day":"07","type":"dissertation","acknowledged_ssus":[{"_id":"ScienComp"}],"article_processing_charge":"No","has_accepted_license":"1","ddc":["576"],"degree_awarded":"PhD","fulldoi":"https://doi.org/10.15479/at:ista:18515","alternative_title":["ISTA Thesis"],"date_published":"2024-11-07T00:00:00Z","language":[{"iso":"eng"}]},{"project":[{"name":"Coherent Optical Metrology Beyond Electric-Dipole-Allowed Transitions","grant_number":"F100403","_id":"7c040762-9f16-11ee-852c-dd79eeee4ab3"},{"name":"IST-BRIDGE: International postdoctoral program","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c","grant_number":"101034413","call_identifier":"H2020"},{"_id":"2688CF98-B435-11E9-9278-68D0E5697425","grant_number":"801770","call_identifier":"H2020","name":"Angulon: physics and applications of a new quasiparticle"},{"name":"FWF Open Access Fund","_id":"3AC91DDA-15DF-11EA-824D-93A3E7B544D1","call_identifier":"FWF"}],"publisher":"American Physical Society","issue":"3","status":"public","quality_controlled":"1","title":"Theory of angular momentum transfer from light to molecules","abstract":[{"lang":"eng","text":"We present a theory describing the interaction of structured light, such as light carrying orbital angular momentum, with molecules. The light-matter interaction Hamiltonian we derive is expressed through couplings between spherical gradients of the electric field and the (transition) electric multipole moments of a particle of any nontrivial rotation point group. Our model can therefore accommodate an arbitrary complexity of the molecular and electric field structure, and it can be straightforwardly extended to atoms or nanostructures. Applying this framework to rovibrational spectroscopy of molecules, we uncover the general mechanism of angular momentum exchange between the spin and orbital angular momenta of light, molecular rotation, and its center-of-mass motion. We show that the nonzero vorticity of Laguerre-Gaussian beams can strongly enhance certain rovibrational transitions that are considered forbidden in the case of nonhelical light. We discuss the experimental requirements for the observation of these forbidden transitions in state-of-the-art spatially resolved spectroscopy measurements."}],"acknowledgement":"We are grateful to Emilio Pisanty and Philipp Lunt for valuable discussions. This research was funded wholly or in part by the Austrian Science Fund (FWF) [10.55776/F1004]. G.M.K. gratefully acknowledges funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 101034413. M.L. acknowledges support by the European Research Council (ERC) Starting Grant No. 801770 (ANGULON). O.H.H. acknowledges support by the Austrian Science Fund (FWF) [10.55776/P36040]. Furthermore, the financial support by the Austrian Federal Ministry for Digital and Economic Affairs, the National Foundation for Research, Technology and Development, and the Christian Doppler Research Association is gratefully acknowledged.","volume":6,"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"researchdata_availability":"no","year":"2024","publication_status":"published","OA_place":"publisher","citation":{"ama":"Maslov M, Koutentakis G, Hrast M, Heckl OH, Lemeshko M. Theory of angular momentum transfer from light to molecules. <i>Physical Review Research</i>. 2024;6(3). doi:<a href=\"https://doi.org/10.1103/physrevresearch.6.033277\">10.1103/physrevresearch.6.033277</a>","mla":"Maslov, Mikhail, et al. “Theory of Angular Momentum Transfer from Light to Molecules.” <i>Physical Review Research</i>, vol. 6, no. 3, 033277, American Physical Society, 2024, doi:<a href=\"https://doi.org/10.1103/physrevresearch.6.033277\">10.1103/physrevresearch.6.033277</a>.","ista":"Maslov M, Koutentakis G, Hrast M, Heckl OH, Lemeshko M. 2024. Theory of angular momentum transfer from light to molecules. Physical Review Research. 6(3), 033277.","short":"M. Maslov, G. Koutentakis, M. Hrast, O.H. Heckl, M. Lemeshko, Physical Review Research 6 (2024).","ieee":"M. Maslov, G. Koutentakis, M. Hrast, O. H. Heckl, and M. Lemeshko, “Theory of angular momentum transfer from light to molecules,” <i>Physical Review Research</i>, vol. 6, no. 3. American Physical Society, 2024.","chicago":"Maslov, Mikhail, Georgios Koutentakis, Mateja Hrast, Oliver H. Heckl, and Mikhail Lemeshko. “Theory of Angular Momentum Transfer from Light to Molecules.” <i>Physical Review Research</i>. American Physical Society, 2024. <a href=\"https://doi.org/10.1103/physrevresearch.6.033277\">https://doi.org/10.1103/physrevresearch.6.033277</a>.","apa":"Maslov, M., Koutentakis, G., Hrast, M., Heckl, O. H., &#38; Lemeshko, M. (2024). Theory of angular momentum transfer from light to molecules. <i>Physical Review Research</i>. American Physical Society. <a href=\"https://doi.org/10.1103/physrevresearch.6.033277\">https://doi.org/10.1103/physrevresearch.6.033277</a>"},"OA_type":"gold","doi":"10.1103/physrevresearch.6.033277","intvolume":"         6","file_date_updated":"2024-09-23T09:46:20Z","oa_version":"Published Version","publication":"Physical Review Research","oa":1,"file":[{"file_size":1563824,"checksum":"8f744d94956a1683b473b1cf9b411a37","relation":"main_file","access_level":"open_access","date_created":"2024-09-23T09:46:20Z","content_type":"application/pdf","success":1,"date_updated":"2024-09-23T09:46:20Z","file_id":"18125","file_name":"2024_PhysicalReviewResearch_Maslov.pdf","creator":"dernst"}],"date_updated":"2026-10-02T11:36:24Z","related_material":{"record":[{"id":"19048","status":"public","relation":"dissertation_contains"}]},"das_tickbox":"0","article_type":"original","APC_amount":"3028,31 EUR","department":[{"_id":"GradSch"},{"_id":"MiLe"}],"date_created":"2024-09-18T11:43:16Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","month":"09","DOAJ_listed":"1","_id":"18087","ec_funded":1,"day":"10","article_processing_charge":"Yes","type":"journal_article","supplementarymaterial":"yes","article_number":"033277","corr_author":"1","author":[{"id":"2E65BB0E-F248-11E8-B48F-1D18A9856A87","first_name":"Mikhail","full_name":"Maslov, Mikhail","orcid":"0000-0003-4074-2570","last_name":"Maslov"},{"last_name":"Koutentakis","id":"d7b23d3a-9e21-11ec-b482-f76739596b95","first_name":"Georgios","full_name":"Koutentakis, Georgios"},{"last_name":"Hrast","first_name":"Mateja","id":"48dbb294-2a9c-11ef-905d-f56be71f0e5d","full_name":"Hrast, Mateja"},{"first_name":"Oliver H.","full_name":"Heckl, Oliver H.","last_name":"Heckl"},{"orcid":"0000-0002-6990-7802","last_name":"Lemeshko","first_name":"Mikhail","id":"37CB05FA-F248-11E8-B48F-1D18A9856A87","full_name":"Lemeshko, Mikhail"}],"scopus_import":"1","publication_identifier":{"eissn":["2643-1564"]},"arxiv":1,"date_published":"2024-09-10T00:00:00Z","external_id":{"arxiv":["2310.00095"]},"language":[{"iso":"eng"}],"fulldoi":"https://doi.org/10.1103/physrevresearch.6.033277","ddc":["530"],"has_accepted_license":"1"},{"supervisor":[{"orcid":"0000-0002-8548-5240","last_name":"Barton","full_name":"Barton, Nicholas H","id":"4880FE40-F248-11E8-B48F-1D18A9856A87","first_name":"Nicholas H"},{"orcid":"0000-0002-6699-1455","last_name":"Tkačik","first_name":"Gašper","id":"3D494DCA-F248-11E8-B48F-1D18A9856A87","full_name":"Tkačik, Gašper"}],"status":"public","project":[{"_id":"2564DBCA-B435-11E9-9278-68D0E5697425","grant_number":"665385","call_identifier":"H2020","name":"International IST Doctoral Program"},{"name":"Can evolution minimize spurious signaling crosstalk to reach optimal performance?","_id":"2665AAFE-B435-11E9-9278-68D0E5697425","grant_number":"RGP0034/2018"},{"name":"Understanding the evolution of continuous genomes","grant_number":"101055327","_id":"bd6958e0-d553-11ed-ba76-86eba6a76c00"}],"publisher":"Institute of Science and Technology Austria","title":"Genetic information and biological optimization","abstract":[{"lang":"eng","text":"This thesis consists of four distinct pieces of work within theoretical biology, with two themes in common: the concept of optimization in biological systems, and the use of information-theoretic tools to quantify biological stochasticity and statistical uncertainty.\r\nChapter 2 develops a statistical framework for studying biological systems which we believe to be optimized for a particular utility function, such as retinal neurons conveying information about visual stimuli. We formalize such beliefs as maximum-entropy Bayesian priors, constrained by the expected utility. We explore how such priors aid inference of system parameters with limited data and enable optimality hypothesis testing: is the utility higher than by chance?\r\nChapter 3 examines the ultimate biological optimization process: evolution by natural selection. As some individuals survive and reproduce more successfully than others, populations evolve towards fitter genotypes and phenotypes. We formalize this as accumulation of genetic information, and use population genetics theory to study how much such information can be accumulated per generation and maintained in the face of random mutation and genetic drift. We identify the population size and fitness variance as the key quantities that control information accumulation and maintenance.\r\nChapter 4 reuses the concept of genetic information from Chapter 3, but from a different perspective: we ask how much genetic information organisms actually need, in particular in the context of gene regulation. For example, how much information is needed to bind transcription factors at correct locations within the genome? Population genetics provides us with a refined answer: with an increasing population size, populations achieve higher fitness by maintaining more genetic information. Moreover, regulatory parameters experience selection pressure to optimize the fitness-information trade-off, i.e. minimize the information needed for a given fitness. This provides an evolutionary derivation of the optimization priors introduced in Chapter 2.\r\nChapter 5 proves an upper bound on mutual information between a signal and a communication channel output (such as neural activity). Mutual information is an important utility measure for biological systems, but its practical use can be difficult due to the large dimensionality of many biological channels. Sometimes, a lower bound on mutual information is computed by replacing the high-dimensional channel outputs with decodes (signal estimates). Our result provides a corresponding upper bound, provided that the decodes are the maximum posterior estimates of the signal."}],"OA_place":"publisher","citation":{"apa":"Hledik, M. (2024). <i>Genetic information and biological optimization</i>. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/at:ista:15020\">https://doi.org/10.15479/at:ista:15020</a>","chicago":"Hledik, Michal. “Genetic Information and Biological Optimization.” Institute of Science and Technology Austria, 2024. <a href=\"https://doi.org/10.15479/at:ista:15020\">https://doi.org/10.15479/at:ista:15020</a>.","ieee":"M. Hledik, “Genetic information and biological optimization,” Institute of Science and Technology Austria, 2024.","short":"M. Hledik, Genetic Information and Biological Optimization, Institute of Science and Technology Austria, 2024.","ista":"Hledik M. 2024. Genetic information and biological optimization. Institute of Science and Technology Austria.","mla":"Hledik, Michal. <i>Genetic Information and Biological Optimization</i>. Institute of Science and Technology Austria, 2024, doi:<a href=\"https://doi.org/10.15479/at:ista:15020\">10.15479/at:ista:15020</a>.","ama":"Hledik M. Genetic information and biological optimization. 2024. doi:<a href=\"https://doi.org/10.15479/at:ista:15020\">10.15479/at:ista:15020</a>"},"publication_status":"published","researchdata_availability":"no","year":"2024","doi":"10.15479/at:ista:15020","oa_version":"Published Version","file_date_updated":"2024-02-23T14:20:16Z","related_material":{"record":[{"relation":"part_of_dissertation","status":"public","id":"7606"},{"status":"public","id":"12081","relation":"part_of_dissertation"},{"id":"7553","status":"public","relation":"part_of_dissertation"}]},"das_tickbox":"0","date_updated":"2026-10-02T11:40:30Z","file":[{"date_created":"2024-02-23T13:50:53Z","content_type":"application/pdf","access_level":"open_access","relation":"main_file","checksum":"b2d3da47c98d481577a4baf68944fe41","file_size":7102089,"creator":"mhledik","file_name":"hledik thesis pdfa 2b.pdf","success":1,"date_updated":"2024-02-23T13:50:53Z","file_id":"15021"},{"access_level":"closed","content_type":"application/zip","date_created":"2024-02-23T13:50:54Z","checksum":"eda9b9430da2610fee7ce1c1419a479a","file_size":14014790,"relation":"source_file","file_name":"hledik thesis source.zip","creator":"mhledik","date_updated":"2024-02-23T14:20:16Z","file_id":"15022"}],"oa":1,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","date_created":"2024-02-23T14:02:04Z","department":[{"_id":"GradSch"},{"_id":"NiBa"},{"_id":"GaTk"}],"_id":"15020","ec_funded":1,"month":"02","day":"23","type":"dissertation","acknowledged_ssus":[{"_id":"ScienComp"}],"article_processing_charge":"No","corr_author":"1","page":"158","supplementarymaterial":"no","publication_identifier":{"issn":["2663-337X"]},"author":[{"last_name":"Hledik","first_name":"Michal","id":"4171253A-F248-11E8-B48F-1D18A9856A87","full_name":"Hledik, Michal"}],"doi_confirm":"1","date_published":"2024-02-23T00:00:00Z","alternative_title":["ISTA Thesis"],"keyword":["Theoretical biology","Optimality","Evolution","Information"],"language":[{"iso":"eng"}],"has_accepted_license":"1","ddc":["576","519"],"degree_awarded":"PhD","fulldoi":"https://doi.org/10.15479/at:ista:15020"},{"das_tickbox":"0","related_material":{"record":[{"relation":"part_of_dissertation","id":"11438","status":"public"}]},"oa":1,"date_updated":"2026-10-02T11:41:41Z","file":[{"checksum":"15b2dbe8d2c9ed7ca5dd413827928077","file_size":6729761,"relation":"main_file","access_level":"open_access","content_type":"application/pdf","date_created":"2024-07-11T10:26:22Z","file_id":"17228","date_updated":"2024-07-11T10:26:22Z","success":1,"file_name":"PhD_Thesis_Vyacheslav_Li_no_signatures_PDFA.pdf","creator":"vli"},{"file_size":9542859,"checksum":"16e904a11d8d0ebb167cb654ddfc7fe5","relation":"source_file","access_level":"closed","date_created":"2024-07-11T10:26:22Z","content_type":"application/x-zip-compressed","file_id":"17229","date_updated":"2024-07-11T10:26:22Z","creator":"vli","file_name":"PhD Thesis Vyacheslav Li.zip"}],"oa_version":"Published Version","file_date_updated":"2024-07-11T10:26:22Z","_id":"17225","month":"07","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","date_created":"2024-07-11T09:46:48Z","department":[{"_id":"GradSch"},{"_id":"OnHo"}],"abstract":[{"lang":"eng","text":"This thesis describes the development of an atom interferometer designed to exploit the\r\nadvantages of utilizing quantum entanglement for enhanced precision measurements beyond\r\nthe standard quantum limit. While the project remains ongoing, significant progress has been\r\nmade.\r\nA key contribution of this work is the development of Quantrol, an experimental control\r\nsystem leveraging the ARTIQ framework. This software enables precise timing and control\r\nwithout requiring prior knowledge of ARTIQ’s implementation details or coding experience.\r\nThe interface offers user friendly visual comprehension of the experimental sequence and\r\nextended capabilities, allowing researchers to scan variables with a simple click of a mouse.\r\nThe main proposed project is to implement atom interferometric sequence with squeezed input\r\nstates inside of a dipole trap generated by a high finesse cavity. The presence of the dipole\r\ntrap allows one dimensional atomic cloud split while maintaining relatively strong confinement\r\nin other directions.\r\nWe are currently able to trap and cool 87Rb atoms to few micro kelvin temperatures, load\r\nthem into the dipole trap and state prepare them to be used for squeezing and interferometric\r\nsequence."}],"title":"Towards a quantum entanglement enhanced atom interferomter","supervisor":[{"full_name":"Hosten, Onur","first_name":"Onur","id":"4C02D85E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2031-204X","last_name":"Hosten"}],"project":[{"_id":"bdb2a702-d553-11ed-ba76-f12e3e5a3bc6","grant_number":"101087907","name":"A quantum hybrid of atoms and milligram-scale pendulums: towards gravitational quantum mechanics"}],"publisher":"Institute of Science and Technology Austria","status":"public","doi":"10.15479/at:ista:17225","citation":{"ista":"Li V. 2024. Towards a quantum entanglement enhanced atom interferomter. Institute of Science and Technology Austria.","ama":"Li V. Towards a quantum entanglement enhanced atom interferomter. 2024. doi:<a href=\"https://doi.org/10.15479/at:ista:17225\">10.15479/at:ista:17225</a>","mla":"Li, Vyacheslav. <i>Towards a Quantum Entanglement Enhanced Atom Interferomter</i>. Institute of Science and Technology Austria, 2024, doi:<a href=\"https://doi.org/10.15479/at:ista:17225\">10.15479/at:ista:17225</a>.","chicago":"Li, Vyacheslav. “Towards a Quantum Entanglement Enhanced Atom Interferomter.” Institute of Science and Technology Austria, 2024. <a href=\"https://doi.org/10.15479/at:ista:17225\">https://doi.org/10.15479/at:ista:17225</a>.","apa":"Li, V. (2024). <i>Towards a quantum entanglement enhanced atom interferomter</i>. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/at:ista:17225\">https://doi.org/10.15479/at:ista:17225</a>","short":"V. Li, Towards a Quantum Entanglement Enhanced Atom Interferomter, Institute of Science and Technology Austria, 2024.","ieee":"V. Li, “Towards a quantum entanglement enhanced atom interferomter,” Institute of Science and Technology Austria, 2024."},"publication_status":"published","OA_place":"publisher","tmp":{"name":"Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)","image":"/images/cc_by_nc_sa.png","short":"CC BY-NC-SA (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode"},"year":"2024","researchdata_availability":"no","language":[{"iso":"eng"}],"date_published":"2024-07-11T00:00:00Z","alternative_title":["ISTA Thesis"],"has_accepted_license":"1","fulldoi":"https://doi.org/10.15479/at:ista:17225","ddc":["530"],"degree_awarded":"PhD","type":"dissertation","article_processing_charge":"No","day":"11","publication_identifier":{"issn":["2663-337X"]},"doi_confirm":"1","author":[{"last_name":"Li","id":"3A4FAA92-F248-11E8-B48F-1D18A9856A87","first_name":"Vyacheslav","full_name":"Li, Vyacheslav"}],"corr_author":"1","page":"79","supplementarymaterial":"no"},{"has_accepted_license":"1","fulldoi":"https://doi.org/10.1142/s0129055x2360005x","ddc":["510"],"language":[{"iso":"eng"}],"date_published":"2024-10-01T00:00:00Z","external_id":{"arxiv":["2301.05621"],"isi":["001099640300002"]},"arxiv":1,"publication_identifier":{"issn":["0129-055X"],"eissn":["1793-6659"]},"scopus_import":"1","author":[{"last_name":"Henheik","orcid":"0000-0003-1106-327X","full_name":"Henheik, Sven Joscha","first_name":"Sven Joscha","id":"31d731d7-d235-11ea-ad11-b50331c8d7fb"},{"full_name":"Lauritsen, Asbjørn Bækgaard","first_name":"Asbjørn Bækgaard","id":"e1a2682f-dc8d-11ea-abe3-81da9ac728f1","last_name":"Lauritsen","orcid":"0000-0003-4476-2288"},{"id":"5DA90512-D80F-11E9-8994-2E2EE6697425","first_name":"Barbara","full_name":"Roos, Barbara","last_name":"Roos","orcid":"0000-0002-9071-5880"}],"article_number":"2360005 ","corr_author":"1","supplementarymaterial":"no","type":"journal_article","article_processing_charge":"Yes (in subscription journal)","day":"01","_id":"14542","ec_funded":1,"month":"10","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","date_created":"2023-11-15T23:48:14Z","article_type":"original","department":[{"_id":"GradSch"},{"_id":"LaEr"},{"_id":"RoSe"}],"das_tickbox":"0","related_material":{"record":[{"status":"public","id":"19540","relation":"dissertation_contains"},{"relation":"dissertation_contains","status":"public","id":"18135"}]},"oa":1,"date_updated":"2026-10-02T11:43:00Z","file":[{"creator":"dernst","file_name":"2024_ReviewsmathPhysics_Henheik.pdf","success":1,"file_id":"18786","date_updated":"2025-01-09T07:56:28Z","date_created":"2025-01-09T07:56:28Z","content_type":"application/pdf","access_level":"open_access","relation":"main_file","file_size":503910,"checksum":"2b053a4223b4db14b90520999ec56054"}],"isi":1,"oa_version":"Published Version","publication":"Reviews in Mathematical Physics","intvolume":"        36","file_date_updated":"2025-01-09T07:56:28Z","doi":"10.1142/s0129055x2360005x","OA_type":"hybrid","OA_place":"publisher","publication_status":"published","citation":{"short":"S.J. Henheik, A.B. Lauritsen, B. Roos, Reviews in Mathematical Physics 36 (2024).","ieee":"S. J. Henheik, A. B. Lauritsen, and B. Roos, “Universality in low-dimensional BCS theory,” <i>Reviews in Mathematical Physics</i>, vol. 36, no. 9. World Scientific Publishing, 2024.","chicago":"Henheik, Sven Joscha, Asbjørn Bækgaard Lauritsen, and Barbara Roos. “Universality in Low-Dimensional BCS Theory.” <i>Reviews in Mathematical Physics</i>. World Scientific Publishing, 2024. <a href=\"https://doi.org/10.1142/s0129055x2360005x\">https://doi.org/10.1142/s0129055x2360005x</a>.","apa":"Henheik, S. J., Lauritsen, A. B., &#38; Roos, B. (2024). Universality in low-dimensional BCS theory. <i>Reviews in Mathematical Physics</i>. World Scientific Publishing. <a href=\"https://doi.org/10.1142/s0129055x2360005x\">https://doi.org/10.1142/s0129055x2360005x</a>","ama":"Henheik SJ, Lauritsen AB, Roos B. Universality in low-dimensional BCS theory. <i>Reviews in Mathematical Physics</i>. 2024;36(9). doi:<a href=\"https://doi.org/10.1142/s0129055x2360005x\">10.1142/s0129055x2360005x</a>","mla":"Henheik, Sven Joscha, et al. “Universality in Low-Dimensional BCS Theory.” <i>Reviews in Mathematical Physics</i>, vol. 36, no. 9, 2360005, World Scientific Publishing, 2024, doi:<a href=\"https://doi.org/10.1142/s0129055x2360005x\">10.1142/s0129055x2360005x</a>.","ista":"Henheik SJ, Lauritsen AB, Roos B. 2024. Universality in low-dimensional BCS theory. Reviews in Mathematical Physics. 36(9), 2360005."},"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"researchdata_availability":"no","volume":36,"year":"2024","acknowledgement":"We thank Robert Seiringer for comments on the paper. J. H. gratefully acknowledges  partial  financial  support  by  the  ERC  Advanced  Grant  “RMTBeyond”No. 101020331.This research was funded in part by the Austrian Science Fund (FWF) grantnumber I6427.","abstract":[{"text":"It is a remarkable property of BCS theory that the ratio of the energy gap at zero temperature Ξ\r\n and the critical temperature Tc is (approximately) given by a universal constant, independent of the microscopic details of the fermionic interaction. This universality has rigorously been proven quite recently in three spatial dimensions and three different limiting regimes: weak coupling, low density and high density. The goal of this short note is to extend the universal behavior to lower dimensions d=1,2 and give an exemplary proof in the weak coupling limit.","lang":"eng"}],"title":"Universality in low-dimensional BCS theory","quality_controlled":"1","project":[{"name":"Random matrices beyond Wigner-Dyson-Mehta","call_identifier":"H2020","_id":"62796744-2b32-11ec-9570-940b20777f1d","grant_number":"101020331"},{"name":"Mathematical Challenges in BCS Theory of Superconductivity","_id":"bda63fe5-d553-11ed-ba76-a16e3d2f256b","grant_number":"I06427"}],"publisher":"World Scientific Publishing","status":"public","issue":"9"},{"corr_author":"1","article_number":"e78","supplementarymaterial":"no","publication_identifier":{"issn":["2050-5094"]},"scopus_import":"1","author":[{"last_name":"Lauritsen","orcid":"0000-0003-4476-2288","full_name":"Lauritsen, Asbjørn Bækgaard","id":"e1a2682f-dc8d-11ea-abe3-81da9ac728f1","first_name":"Asbjørn Bækgaard"},{"last_name":"Seiringer","orcid":"0000-0002-6781-0521","full_name":"Seiringer, Robert","first_name":"Robert","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87"}],"day":"09","type":"journal_article","article_processing_charge":"Yes","has_accepted_license":"1","ddc":["510"],"fulldoi":"https://doi.org/10.1017/fms.2024.56","date_published":"2024-09-09T00:00:00Z","external_id":{"arxiv":["2407.05990"],"isi":["001307817400001"]},"arxiv":1,"language":[{"iso":"eng"}],"publication_status":"published","citation":{"short":"A.B. Lauritsen, R. Seiringer, Forum of Mathematics, Sigma 12 (2024).","ieee":"A. B. Lauritsen and R. Seiringer, “Pressure of a dilute spin-polarized Fermi gas: Lower bound,” <i>Forum of Mathematics, Sigma</i>, vol. 12. Cambridge University Press, 2024.","chicago":"Lauritsen, Asbjørn Bækgaard, and Robert Seiringer. “Pressure of a Dilute Spin-Polarized Fermi Gas: Lower Bound.” <i>Forum of Mathematics, Sigma</i>. Cambridge University Press, 2024. <a href=\"https://doi.org/10.1017/fms.2024.56\">https://doi.org/10.1017/fms.2024.56</a>.","apa":"Lauritsen, A. B., &#38; Seiringer, R. (2024). Pressure of a dilute spin-polarized Fermi gas: Lower bound. <i>Forum of Mathematics, Sigma</i>. Cambridge University Press. <a href=\"https://doi.org/10.1017/fms.2024.56\">https://doi.org/10.1017/fms.2024.56</a>","ama":"Lauritsen AB, Seiringer R. Pressure of a dilute spin-polarized Fermi gas: Lower bound. <i>Forum of Mathematics, Sigma</i>. 2024;12. doi:<a href=\"https://doi.org/10.1017/fms.2024.56\">10.1017/fms.2024.56</a>","mla":"Lauritsen, Asbjørn Bækgaard, and Robert Seiringer. “Pressure of a Dilute Spin-Polarized Fermi Gas: Lower Bound.” <i>Forum of Mathematics, Sigma</i>, vol. 12, e78, Cambridge University Press, 2024, doi:<a href=\"https://doi.org/10.1017/fms.2024.56\">10.1017/fms.2024.56</a>.","ista":"Lauritsen AB, Seiringer R. 2024. Pressure of a dilute spin-polarized Fermi gas: Lower bound. Forum of Mathematics, Sigma. 12, e78."},"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"researchdata_availability":"no","volume":12,"year":"2024","doi":"10.1017/fms.2024.56","quality_controlled":"1","status":"public","publisher":"Cambridge University Press","project":[{"_id":"bda63fe5-d553-11ed-ba76-a16e3d2f256b","grant_number":"I06427","name":"Mathematical Challenges in BCS Theory of Superconductivity"}],"acknowledgement":"Financial support by the Austrian Science Fund (FWF) through grant DOI: 10.55776/I6427 (as part of the SFB/TRR 352) is gratefully acknowledged.","abstract":[{"text":"We consider a dilute fully spin-polarized Fermi gas at positive temperature in dimensions  d∈{1,2,3} . We show that the pressure of the interacting gas is bounded from below by that of the free gas plus, to leading order, an explicit term of order  adρ2+2/d, where a is the p-wave scattering length of the repulsive interaction and  ρ  is the particle density. The results are valid for a wide range of repulsive interactions, including that of a hard core, and uniform in temperatures at most of the order of the Fermi temperature. A central ingredient in the proof is a rigorous implementation of the fermionic cluster expansion of Gaudin, Gillespie and Ripka (Nucl. Phys. A, 176.2 (1971), pp. 237–260).","lang":"eng"}],"title":"Pressure of a dilute spin-polarized Fermi gas: Lower bound","date_created":"2024-09-20T12:25:25Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","department":[{"_id":"GradSch"},{"_id":"RoSe"}],"article_type":"original","_id":"18107","month":"09","publication":"Forum of Mathematics, Sigma","oa_version":"Published Version","file_date_updated":"2024-09-23T09:56:17Z","intvolume":"        12","das_tickbox":"0","related_material":{"record":[{"relation":"dissertation_contains","status":"public","id":"18135"}]},"isi":1,"date_updated":"2026-10-02T11:43:00Z","file":[{"success":1,"file_id":"18126","date_updated":"2024-09-23T09:56:17Z","creator":"dernst","file_name":"2024_ForumMath_Lauritsen.pdf","file_size":599886,"checksum":"330b881240013213a8e08538fec13d29","relation":"main_file","access_level":"open_access","date_created":"2024-09-23T09:56:17Z","content_type":"application/pdf"}],"oa":1},{"publication_identifier":{"issn":["2663-337X"]},"doi_confirm":"1","author":[{"full_name":"Sisak, Maria A","id":"44A03D04-AEA4-11E9-B225-EA2DE6697425","first_name":"Maria A","last_name":"Sisak"}],"page":"178","corr_author":"1","supplementarymaterial":"no","type":"dissertation","article_processing_charge":"No","day":"24","has_accepted_license":"1","fulldoi":"https://doi.org/10.15479/at:ista:18443","ddc":["516"],"degree_awarded":"PhD","keyword":["hyperkaehler geometry","branes","mirror symmetry","T-duality"],"language":[{"iso":"eng"}],"date_published":"2024-10-24T00:00:00Z","alternative_title":["ISTA Thesis"],"doi":"10.15479/at:ista:18443","OA_type":"free access","OA_place":"publisher","citation":{"apa":"Sisak, M. A. (2024). <i>T-dual branes on hyperkähler manifolds</i>. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/at:ista:18443\">https://doi.org/10.15479/at:ista:18443</a>","chicago":"Sisak, Maria A. “T-Dual Branes on Hyperkähler Manifolds.” Institute of Science and Technology Austria, 2024. <a href=\"https://doi.org/10.15479/at:ista:18443\">https://doi.org/10.15479/at:ista:18443</a>.","ieee":"M. A. Sisak, “T-dual branes on hyperkähler manifolds,” Institute of Science and Technology Austria, 2024.","short":"M.A. Sisak, T-Dual Branes on Hyperkähler Manifolds, Institute of Science and Technology Austria, 2024.","ista":"Sisak MA. 2024. T-dual branes on hyperkähler manifolds. Institute of Science and Technology Austria.","mla":"Sisak, Maria A. <i>T-Dual Branes on Hyperkähler Manifolds</i>. Institute of Science and Technology Austria, 2024, doi:<a href=\"https://doi.org/10.15479/at:ista:18443\">10.15479/at:ista:18443</a>.","ama":"Sisak MA. T-dual branes on hyperkähler manifolds. 2024. doi:<a href=\"https://doi.org/10.15479/at:ista:18443\">10.15479/at:ista:18443</a>"},"publication_status":"published","researchdata_availability":"no","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"year":"2024","abstract":[{"lang":"eng","text":"In [KW06] Kapustin and Witten conjectured that there is a mirror symmetry relation between\r\nthe hyperkähler structures on certain Higgs bundle moduli spaces. As a consequence, they\r\nconjecture an equivalence between categories of BBB and BAA-branes. At the classical\r\nlevel, this mirror symmetry is given by T-duality between semi-flat hyperkähler structures on\r\nalgebraic integrable systems.\r\nIn this thesis, we investigate the T-duality relation between hyperkähler structures and the\r\ncorresponding branes on affine torus bundles. We use the techniques of generalized geometry\r\nto show that semi-flat hyperkähler structures are T-dual on algebraic integrable systems.\r\nWe also describe T-duality for generalized branes. Motivated by Fourier-Mukai transform\r\nwe upgrade the T-duality between generalized branes to T-duality of submanifolds endowed\r\nwith U(1)-bundles and connections. This T-duality in the appropriate context specializes to\r\nT-duality between BBB and BAA-branes.\r\n"}],"title":"T-dual branes on hyperkähler manifolds","supervisor":[{"orcid":"0000-0002-9582-2634","last_name":"Hausel","full_name":"Hausel, Tamás","first_name":"Tamás","id":"4A0666D8-F248-11E8-B48F-1D18A9856A87"}],"project":[{"name":"Branes on hyperkähler manifolds","grant_number":"26069","_id":"6286e8c4-2b32-11ec-9570-f5297902f67f"}],"publisher":"Institute of Science and Technology Austria","status":"public","_id":"18443","month":"10","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","date_created":"2024-10-19T12:00:37Z","department":[{"_id":"GradSch"},{"_id":"TaHa"}],"das_tickbox":"0","oa":1,"file":[{"relation":"main_file","file_size":1672547,"checksum":"8c4893e726aaa4b3efb82758da9b6851","date_created":"2024-10-23T14:42:45Z","content_type":"application/pdf","access_level":"open_access","success":1,"date_updated":"2024-10-23T14:42:45Z","file_id":"18467","file_name":"MASisak_dissertation.pdf","creator":"msisak"},{"access_level":"closed","content_type":"application/x-zip-compressed","date_created":"2024-10-23T14:43:56Z","checksum":"1831b072e861a1e5481024ca9d02b036","file_size":617913,"relation":"source_file","creator":"msisak","file_name":"MASisak_source.zip","file_id":"18468","date_updated":"2024-10-24T08:09:13Z"}],"date_updated":"2026-10-02T11:43:57Z","oa_version":"Published Version","file_date_updated":"2024-10-24T08:09:13Z"},{"title":"QuAK: Quantitative Automata Kit","abstract":[{"text":"System behaviors are traditionally evaluated through binary classifications of correctness, which do not suffice for properties involving quantitative aspects of systems and executions. Quantitative automata offer a more nuanced approach, mapping each execution to a real number by incorporating weighted transitions and value functions generalizing acceptance conditions. In this paper, we introduce QuAK, the first tool designed to automate the analysis of quantitative automata. QuAK currently supports a variety of quantitative automaton types, including Inf, Sup, LimInf, LimSup, LimInfAvg, and LimSupAvg automata, and implements decision procedures for problems such as emptiness, universality, inclusion, equivalence, as well as for checking whether an automaton is safe, live, or constant. Additionally, QuAK is able to compute extremal values when possible, construct safety-liveness decompositions, and monitor system behaviors. We demonstrate the effectiveness of QuAK through experiments focusing on the inclusion, constant-function check, and monitoring problems.","lang":"eng"}],"acknowledgement":"This work was supported in part by the ERC-2020-AdG 101020093. N. Mazzocchi was affiliated with ISTA when his collaboration started.","project":[{"_id":"62781420-2b32-11ec-9570-8d9b63373d4d","grant_number":"101020093","call_identifier":"H2020","name":"Vigilant Algorithmic Monitoring of Software"}],"publisher":"Springer Nature","status":"public","quality_controlled":"1","OA_type":"hybrid","doi":"10.1007/978-3-031-75387-9_1","researchdata_availability":"no","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"year":"2024","volume":15222,"citation":{"apa":"Chalupa, M., Henzinger, T. A., Mazzocchi, N. A., &#38; Sarac, N. E. (2024). QuAK: Quantitative Automata Kit. In <i>12th International Symposium on Leveraging Applications of Formal Methods, Verification and Validation</i> (Vol. 15222, pp. 3–20). Crete, Greece: Springer Nature. <a href=\"https://doi.org/10.1007/978-3-031-75387-9_1\">https://doi.org/10.1007/978-3-031-75387-9_1</a>","chicago":"Chalupa, Marek, Thomas A Henzinger, Nicolas Adrien Mazzocchi, and Naci E Sarac. “QuAK: Quantitative Automata Kit.” In <i>12th International Symposium on Leveraging Applications of Formal Methods, Verification and Validation</i>, 15222:3–20. Springer Nature, 2024. <a href=\"https://doi.org/10.1007/978-3-031-75387-9_1\">https://doi.org/10.1007/978-3-031-75387-9_1</a>.","ieee":"M. Chalupa, T. A. Henzinger, N. A. Mazzocchi, and N. E. Sarac, “QuAK: Quantitative Automata Kit,” in <i>12th International Symposium on Leveraging Applications of Formal Methods, Verification and Validation</i>, Crete, Greece, 2024, vol. 15222, pp. 3–20.","short":"M. Chalupa, T.A. Henzinger, N.A. Mazzocchi, N.E. Sarac, in:, 12th International Symposium on Leveraging Applications of Formal Methods, Verification and Validation, Springer Nature, 2024, pp. 3–20.","ista":"Chalupa M, Henzinger TA, Mazzocchi NA, Sarac NE. 2024. QuAK: Quantitative Automata Kit. 12th International Symposium on Leveraging Applications of Formal Methods, Verification and Validation. ISoLA: International Symposium on Leveraging Applications, LNCS, vol. 15222, 3–20.","mla":"Chalupa, Marek, et al. “QuAK: Quantitative Automata Kit.” <i>12th International Symposium on Leveraging Applications of Formal Methods, Verification and Validation</i>, vol. 15222, Springer Nature, 2024, pp. 3–20, doi:<a href=\"https://doi.org/10.1007/978-3-031-75387-9_1\">10.1007/978-3-031-75387-9_1</a>.","ama":"Chalupa M, Henzinger TA, Mazzocchi NA, Sarac NE. QuAK: Quantitative Automata Kit. In: <i>12th International Symposium on Leveraging Applications of Formal Methods, Verification and Validation</i>. Vol 15222. Springer Nature; 2024:3-20. doi:<a href=\"https://doi.org/10.1007/978-3-031-75387-9_1\">10.1007/978-3-031-75387-9_1</a>"},"publication_status":"published","OA_place":"publisher","oa":1,"isi":1,"file":[{"file_name":"isola24.pdf","creator":"esarac","success":1,"file_id":"17635","date_updated":"2024-09-05T14:26:02Z","date_created":"2024-09-05T14:26:02Z","content_type":"application/pdf","access_level":"open_access","relation":"main_file","checksum":"43e432f82be376434b358f3dd7a94b71","file_size":847422},{"relation":"main_file","checksum":"6bc04f07bb5612c0e7ea00ac121a69b6","file_size":1358706,"content_type":"application/pdf","date_created":"2025-01-21T14:39:49Z","access_level":"open_access","date_updated":"2025-01-21T14:39:49Z","file_id":"18865","success":1,"creator":"dernst","file_name":"2024_LNCS_Chalupa.pdf"}],"date_updated":"2026-10-02T11:44:52Z","das_tickbox":"0","related_material":{"record":[{"status":"public","id":"20147","relation":"dissertation_contains"}]},"intvolume":"     15222","file_date_updated":"2025-01-21T14:39:49Z","publication":"12th International Symposium on Leveraging Applications of Formal Methods, Verification and Validation","oa_version":"Published Version","month":"10","conference":{"start_date":"2024-10-27","end_date":"2024-10-31","name":"ISoLA: International Symposium on Leveraging Applications","location":"Crete, Greece"},"_id":"17634","ec_funded":1,"APC_amount":"2748 EUR","department":[{"_id":"GradSch"},{"_id":"ToHe"}],"date_created":"2024-09-05T14:27:08Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","article_processing_charge":"Yes (in subscription journal)","type":"conference","day":"26","author":[{"last_name":"Chalupa","full_name":"Chalupa, Marek","first_name":"Marek","id":"87e34708-d6c6-11ec-9f5b-9391e7be2463"},{"first_name":"Thomas A","id":"40876CD8-F248-11E8-B48F-1D18A9856A87","full_name":"Henzinger, Thomas A","orcid":"0000-0002-2985-7724","last_name":"Henzinger"},{"first_name":"Nicolas Adrien","id":"b26baa86-3308-11ec-87b0-8990f34baa85","full_name":"Mazzocchi, Nicolas Adrien","last_name":"Mazzocchi"},{"first_name":"Naci E","id":"8C6B42F8-C8E6-11E9-A03A-F2DCE5697425","full_name":"Sarac, Naci E","last_name":"Sarac"}],"scopus_import":"1","publication_identifier":{"eissn":["1611-3349"],"isbn":["9783031753862"],"issn":["0302-9743"]},"supplementarymaterial":"no","corr_author":"1","page":"3-20","language":[{"iso":"eng"}],"arxiv":1,"date_published":"2024-10-26T00:00:00Z","alternative_title":["LNCS"],"external_id":{"isi":["001419008700001"],"arxiv":["2409.03569"]},"fulldoi":"https://doi.org/10.1007/978-3-031-75387-9_1","ddc":["000"],"has_accepted_license":"1"},{"intvolume":"        72","file_date_updated":"2024-07-22T09:43:19Z","oa_version":"Published Version","publication":"Discrete and Computational Geometry","oa":1,"file":[{"date_created":"2024-07-22T09:43:19Z","content_type":"application/pdf","access_level":"open_access","relation":"main_file","checksum":"b207b4e00f904e8ea8a30e24f0251f79","file_size":892019,"creator":"dernst","file_name":"2024_DiscreteComputGeom_Edelsbrunner.pdf","success":1,"date_updated":"2024-07-22T09:43:19Z","file_id":"17301"}],"date_updated":"2026-10-02T11:45:50Z","isi":1,"das_tickbox":"0","article_type":"original","department":[{"_id":"HeEd"}],"date_created":"2023-09-17T22:01:10Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","month":"07","ec_funded":1,"_id":"14345","project":[{"_id":"266A2E9E-B435-11E9-9278-68D0E5697425","grant_number":"788183","call_identifier":"H2020","name":"Alpha Shape Theory Extended"},{"_id":"268116B8-B435-11E9-9278-68D0E5697425","grant_number":"Z00342","call_identifier":"FWF","name":"Mathematics, Computer Science"},{"call_identifier":"FWF","_id":"2561EBF4-B435-11E9-9278-68D0E5697425","grant_number":"I02979-N35","name":"Persistence and stability of geometric complexes"}],"publisher":"Springer Nature","status":"public","quality_controlled":"1","title":"On angles in higher order Brillouin tessellations and related tilings in the plane","abstract":[{"lang":"eng","text":"For a locally finite set in R2, the order-k Brillouin tessellations form an infinite sequence of convex face-to-face tilings of the plane. If the set is coarsely dense and generic, then the corresponding infinite sequences of minimum and maximum angles are both monotonic in k. As an example, a stationary Poisson point process in R2  is locally finite, coarsely dense, and generic with probability one. For such a set, the distributions of angles in the Voronoi tessellations, Delaunay mosaics, and Brillouin tessellations are independent of the order and can be derived from the formula for angles in order-1 Delaunay mosaics given by Miles (Math. Biosci. 6, 85–127 (1970))."}],"acknowledgement":"Work by all authors but A. Garber is supported by the European Research Council (ERC), Grant No. 788183, by the Wittgenstein Prize, Austrian Science Fund (FWF), Grant No. Z 342-N31, and by the DFG Collaborative Research Center TRR 109, Austrian Science Fund (FWF), Grant No. I 02979-N35. Work by A. Garber is partially supported by the Alexander von Humboldt Foundation.","volume":72,"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"year":"2024","researchdata_availability":"no","publication_status":"published","citation":{"ista":"Edelsbrunner H, Garber A, Ghafari M, Heiss T, Saghafian M. 2024. On angles in higher order Brillouin tessellations and related tilings in the plane. Discrete and Computational Geometry. 72, 29–48.","ama":"Edelsbrunner H, Garber A, Ghafari M, Heiss T, Saghafian M. On angles in higher order Brillouin tessellations and related tilings in the plane. <i>Discrete and Computational Geometry</i>. 2024;72:29-48. doi:<a href=\"https://doi.org/10.1007/s00454-023-00566-1\">10.1007/s00454-023-00566-1</a>","mla":"Edelsbrunner, Herbert, et al. “On Angles in Higher Order Brillouin Tessellations and Related Tilings in the Plane.” <i>Discrete and Computational Geometry</i>, vol. 72, Springer Nature, 2024, pp. 29–48, doi:<a href=\"https://doi.org/10.1007/s00454-023-00566-1\">10.1007/s00454-023-00566-1</a>.","chicago":"Edelsbrunner, Herbert, Alexey Garber, Mohadese Ghafari, Teresa Heiss, and Morteza Saghafian. “On Angles in Higher Order Brillouin Tessellations and Related Tilings in the Plane.” <i>Discrete and Computational Geometry</i>. Springer Nature, 2024. <a href=\"https://doi.org/10.1007/s00454-023-00566-1\">https://doi.org/10.1007/s00454-023-00566-1</a>.","apa":"Edelsbrunner, H., Garber, A., Ghafari, M., Heiss, T., &#38; Saghafian, M. (2024). On angles in higher order Brillouin tessellations and related tilings in the plane. <i>Discrete and Computational Geometry</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s00454-023-00566-1\">https://doi.org/10.1007/s00454-023-00566-1</a>","short":"H. Edelsbrunner, A. Garber, M. Ghafari, T. Heiss, M. Saghafian, Discrete and Computational Geometry 72 (2024) 29–48.","ieee":"H. Edelsbrunner, A. Garber, M. Ghafari, T. Heiss, and M. Saghafian, “On angles in higher order Brillouin tessellations and related tilings in the plane,” <i>Discrete and Computational Geometry</i>, vol. 72. Springer Nature, pp. 29–48, 2024."},"doi":"10.1007/s00454-023-00566-1","arxiv":1,"external_id":{"isi":["001060727600004"],"arxiv":["2204.01076"],"pmid":["39610762"]},"date_published":"2024-07-01T00:00:00Z","pmid":1,"language":[{"iso":"eng"}],"fulldoi":"https://doi.org/10.1007/s00454-023-00566-1","ddc":["510"],"has_accepted_license":"1","day":"01","article_processing_charge":"Yes (via OA deal)","type":"journal_article","supplementarymaterial":"yes","page":"29-48","corr_author":"1","author":[{"full_name":"Edelsbrunner, Herbert","id":"3FB178DA-F248-11E8-B48F-1D18A9856A87","first_name":"Herbert","last_name":"Edelsbrunner","orcid":"0000-0002-9823-6833"},{"last_name":"Garber","first_name":"Alexey","full_name":"Garber, Alexey"},{"full_name":"Ghafari, Mohadese","first_name":"Mohadese","last_name":"Ghafari"},{"first_name":"Teresa","id":"4879BB4E-F248-11E8-B48F-1D18A9856A87","full_name":"Heiss, Teresa","orcid":"0000-0002-1780-2689","last_name":"Heiss"},{"last_name":"Saghafian","full_name":"Saghafian, Morteza","id":"f86f7148-b140-11ec-9577-95435b8df824","first_name":"Morteza"}],"publication_identifier":{"eissn":["1432-0444"],"issn":["0179-5376"]},"scopus_import":"1"},{"day":"01","article_processing_charge":"No","type":"conference","supplementarymaterial":"no","article_number":"69","author":[{"last_name":"Kourimska","orcid":"0000-0001-7841-0091","first_name":"Hana","id":"D9B8E14C-3C26-11EA-98F5-1F833DDC885E","full_name":"Kourimska, Hana"},{"last_name":"Lieutier","full_name":"Lieutier, André","first_name":"André"},{"orcid":"0000-0002-7472-2220","last_name":"Wintraecken","full_name":"Wintraecken, Mathijs","first_name":"Mathijs","id":"307CFBC8-F248-11E8-B48F-1D18A9856A87"}],"scopus_import":"1","publication_identifier":{"issn":["1868-8969"],"isbn":["9783959773164"]},"arxiv":1,"date_published":"2024-06-01T00:00:00Z","external_id":{"arxiv":["2212.01118"]},"alternative_title":["LIPIcs"],"language":[{"iso":"eng"}],"ddc":["510"],"fulldoi":"https://doi.org/10.4230/LIPIcs.SoCG.2024.69","has_accepted_license":"1","status":"public","publisher":"Schloss Dagstuhl - Leibniz-Zentrum für Informatik","project":[{"call_identifier":"H2020","grant_number":"788183","_id":"266A2E9E-B435-11E9-9278-68D0E5697425","name":"Alpha Shape Theory Extended"},{"name":"Mathematics, Computer Science","call_identifier":"FWF","_id":"268116B8-B435-11E9-9278-68D0E5697425","grant_number":"Z00342"},{"_id":"2561EBF4-B435-11E9-9278-68D0E5697425","grant_number":"I02979-N35","call_identifier":"FWF","name":"Persistence and stability of geometric complexes"},{"call_identifier":"H2020","grant_number":"754411","_id":"260C2330-B435-11E9-9278-68D0E5697425","name":"ISTplus - Postdoctoral Fellowships"},{"_id":"fc390959-9c52-11eb-aca3-afa58bd282b2","grant_number":"M03073","name":"Learning and triangulating manifolds via collapses"}],"quality_controlled":"1","abstract":[{"lang":"eng","text":"We prove that the medial axis of closed sets is Hausdorff stable in the following sense: Let 𝒮 ⊆ ℝ^d be a fixed closed set that contains a bounding sphere. That is, the bounding sphere is part of the set 𝒮. Consider the space of C^{1,1} diffeomorphisms of ℝ^d to itself, which keep the bounding sphere invariant. The map from this space of diffeomorphisms (endowed with a Banach norm) to the space of closed subsets of ℝ^d (endowed with the Hausdorff distance), mapping a diffeomorphism F to the closure of the medial axis of F(𝒮), is Lipschitz. This extends a previous stability result of Chazal and Soufflet on the stability of the medial axis of C² manifolds under C² ambient diffeomorphisms."}],"title":"The medial axis of any closed bounded set Is Lipschitz stable with respect to the Hausdorff distance Under ambient diffeomorphisms","acknowledgement":"This research has been supported by the European Research Council (ERC), grant No. 788183, by the Wittgenstein Prize, Austrian Science Fund (FWF), grant No. Z 342-N31, and by the DFG Collaborative Research Center TRR 109, Austrian Science Fund (FWF), grant No. I 02979-N35.\r\nSupported by the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No. 754411, the Austrian science fund (FWF) grant No. M-3073, and the welcome package from IDEX of the Université Cô d'Azur.\r\nWe are greatly indebted to Fred Chazal for sharing his insights. We further thank Erin Chambers, Christopher Fillmore, and Elizabeth Stephenson for early discussions and all members of the Edelsbrunner group (Institute of Science and Technology Austria) and the Datashape team (Inria) for the atmosphere in which this research was conducted.","researchdata_availability":"no","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"volume":293,"year":"2024","citation":{"ista":"Kourimska H, Lieutier A, Wintraecken M. 2024. The medial axis of any closed bounded set Is Lipschitz stable with respect to the Hausdorff distance Under ambient diffeomorphisms. 40th International Symposium on Computational Geometry. SoCG: Symposium on Computational Geometry, LIPIcs, vol. 293, 69.","ama":"Kourimska H, Lieutier A, Wintraecken M. The medial axis of any closed bounded set Is Lipschitz stable with respect to the Hausdorff distance Under ambient diffeomorphisms. In: <i>40th International Symposium on Computational Geometry</i>. Vol 293. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2024. doi:<a href=\"https://doi.org/10.4230/LIPIcs.SoCG.2024.69\">10.4230/LIPIcs.SoCG.2024.69</a>","mla":"Kourimska, Hana, et al. “The Medial Axis of Any Closed Bounded Set Is Lipschitz Stable with Respect to the Hausdorff Distance Under Ambient Diffeomorphisms.” <i>40th International Symposium on Computational Geometry</i>, vol. 293, 69, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2024, doi:<a href=\"https://doi.org/10.4230/LIPIcs.SoCG.2024.69\">10.4230/LIPIcs.SoCG.2024.69</a>.","chicago":"Kourimska, Hana, André Lieutier, and Mathijs Wintraecken. “The Medial Axis of Any Closed Bounded Set Is Lipschitz Stable with Respect to the Hausdorff Distance Under Ambient Diffeomorphisms.” In <i>40th International Symposium on Computational Geometry</i>, Vol. 293. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2024. <a href=\"https://doi.org/10.4230/LIPIcs.SoCG.2024.69\">https://doi.org/10.4230/LIPIcs.SoCG.2024.69</a>.","apa":"Kourimska, H., Lieutier, A., &#38; Wintraecken, M. (2024). The medial axis of any closed bounded set Is Lipschitz stable with respect to the Hausdorff distance Under ambient diffeomorphisms. In <i>40th International Symposium on Computational Geometry</i> (Vol. 293). Athens, Greece: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. <a href=\"https://doi.org/10.4230/LIPIcs.SoCG.2024.69\">https://doi.org/10.4230/LIPIcs.SoCG.2024.69</a>","short":"H. Kourimska, A. Lieutier, M. Wintraecken, in:, 40th International Symposium on Computational Geometry, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2024.","ieee":"H. Kourimska, A. Lieutier, and M. Wintraecken, “The medial axis of any closed bounded set Is Lipschitz stable with respect to the Hausdorff distance Under ambient diffeomorphisms,” in <i>40th International Symposium on Computational Geometry</i>, Athens, Greece, 2024, vol. 293."},"publication_status":"published","doi":"10.4230/LIPIcs.SoCG.2024.69","file_date_updated":"2024-06-17T08:33:40Z","intvolume":"       293","publication":"40th International Symposium on Computational Geometry","oa_version":"Published Version","file":[{"creator":"dernst","file_name":"2024_LIPICS_Kourimska.pdf","date_updated":"2024-06-17T08:33:40Z","file_id":"17150","success":1,"content_type":"application/pdf","date_created":"2024-06-17T08:33:40Z","access_level":"open_access","relation":"main_file","checksum":"b40ff456c19294adb5d9613fcfd751c6","file_size":1612558}],"date_updated":"2026-10-02T11:46:39Z","oa":1,"das_tickbox":"0","department":[{"_id":"HeEd"}],"date_created":"2024-06-16T22:01:06Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","month":"06","_id":"17144","ec_funded":1,"conference":{"name":"SoCG: Symposium on Computational Geometry","end_date":"2024-06-14","location":"Athens, Greece"}}]