[{"article_processing_charge":"Yes (via OA deal)","author":[{"first_name":"Jorge","full_name":"Condor, Jorge","last_name":"Condor"},{"full_name":"Piovarci, Michael","last_name":"Piovarci","first_name":"Michael","orcid":"0000-0002-5062-4474","id":"62E473F4-5C99-11EA-A40E-AF823DDC885E"},{"full_name":"Bickel, Bernd","last_name":"Bickel","id":"49876194-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6511-9385","first_name":"Bernd"},{"last_name":"Didyk","full_name":"Didyk, Piotr","first_name":"Piotr"}],"date_updated":"2025-04-15T07:43:53Z","department":[{"_id":"BeBi"}],"isi":1,"status":"public","publication_status":"published","doi":"10.1145/3588432.3591546","type":"conference","oa_version":"Published Version","month":"07","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","conference":{"end_date":"2023-08-10","name":"SIGGRAPH: Computer Graphics and Interactive Techniques Conference","location":"Los Angeles, CA, United States","start_date":"2023-08-06"},"acknowledgement":"We thank Matthew S Zurawski for the 3D model of the car speed shape. This research has been supported by the Swiss National Science Foundation (SNSF, Grant 200502) and the FWF Lise Meitner (Grant M 3319).","file":[{"access_level":"open_access","success":1,"date_created":"2023-05-16T09:32:50Z","file_id":"12983","content_type":"application/pdf","creator":"mpiovarc","file_name":"Condor2023_supplemental.pdf","date_updated":"2023-05-16T09:32:50Z","file_size":42323971,"relation":"main_file","checksum":"84a437739af5d46507928939b20c0c28"},{"content_type":"application/pdf","creator":"dernst","success":1,"access_level":"open_access","date_created":"2024-01-29T10:14:10Z","file_id":"14893","file_size":26079404,"relation":"main_file","checksum":"0f5c8b242e8e7c153c04888c4d0c6f37","date_updated":"2024-01-29T10:14:10Z","file_name":"2023_Siggraph_Condor.pdf"}],"external_id":{"isi":["001117690500021"]},"publication_identifier":{"isbn":["9798400701597"]},"citation":{"ama":"Condor J, Piovarci M, Bickel B, Didyk P. Gloss-aware color correction for 3D printing. In: <i>SIGGRAPH ’23 Conference Proceedings</i>. Association for Computing Machinery; 2023. doi:<a href=\"https://doi.org/10.1145/3588432.3591546\">10.1145/3588432.3591546</a>","apa":"Condor, J., Piovarci, M., Bickel, B., &#38; Didyk, P. (2023). Gloss-aware color correction for 3D printing. In <i>SIGGRAPH ’23 Conference Proceedings</i>. Los Angeles, CA, United States: Association for Computing Machinery. <a href=\"https://doi.org/10.1145/3588432.3591546\">https://doi.org/10.1145/3588432.3591546</a>","chicago":"Condor, Jorge, Michael Piovarci, Bernd Bickel, and Piotr Didyk. “Gloss-Aware Color Correction for 3D Printing.” In <i>SIGGRAPH ’23 Conference Proceedings</i>. Association for Computing Machinery, 2023. <a href=\"https://doi.org/10.1145/3588432.3591546\">https://doi.org/10.1145/3588432.3591546</a>.","ista":"Condor J, Piovarci M, Bickel B, Didyk P. 2023. Gloss-aware color correction for 3D printing. SIGGRAPH ’23 Conference Proceedings. SIGGRAPH: Computer Graphics and Interactive Techniques Conference, 21.","short":"J. Condor, M. Piovarci, B. Bickel, P. Didyk, in:, SIGGRAPH ’23 Conference Proceedings, Association for Computing Machinery, 2023.","ieee":"J. Condor, M. Piovarci, B. Bickel, and P. Didyk, “Gloss-aware color correction for 3D printing,” in <i>SIGGRAPH ’23 Conference Proceedings</i>, Los Angeles, CA, United States, 2023.","mla":"Condor, Jorge, et al. “Gloss-Aware Color Correction for 3D Printing.” <i>SIGGRAPH ’23 Conference Proceedings</i>, 21, Association for Computing Machinery, 2023, doi:<a href=\"https://doi.org/10.1145/3588432.3591546\">10.1145/3588432.3591546</a>."},"article_number":"21","has_accepted_license":"1","language":[{"iso":"eng"}],"scopus_import":"1","license":"https://creativecommons.org/licenses/by/4.0/","corr_author":"1","file_date_updated":"2024-01-29T10:14:10Z","project":[{"grant_number":"M03319","name":"Perception-Aware Appearance Fabrication","_id":"eb901961-77a9-11ec-83b8-f5c883a62027"}],"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)"},"oa":1,"date_published":"2023-07-23T00:00:00Z","year":"2023","abstract":[{"lang":"eng","text":"Color and gloss are fundamental aspects of surface appearance. State-of-the-art fabrication techniques can manipulate both properties of the printed 3D objects. However, in the context of appearance reproduction, perceptual aspects of color and gloss are usually handled separately, even though previous perceptual studies suggest their interaction. Our work is motivated by previous studies demonstrating a perceived color shift due to a change in the object's gloss, i.e., two samples with the same color but different surface gloss appear as they have different colors. In this paper, we conduct new experiments which support this observation and provide insights into the magnitude and direction of the perceived color change. We use the observations as guidance to design a new method that estimates and corrects the color shift enabling the fabrication of objects with the same perceived color but different surface gloss. We formulate the problem as an optimization procedure solved using differentiable rendering. We evaluate the effectiveness of our method in perceptual experiments with 3D objects fabricated using a multi-material 3D printer and demonstrate potential applications. "}],"date_created":"2023-05-16T09:34:13Z","quality_controlled":"1","title":"Gloss-aware color correction for 3D printing","publication":"SIGGRAPH ’23 Conference Proceedings","keyword":["color","gloss","perception","color compensation","color management"],"ddc":["004"],"_id":"12979","publisher":"Association for Computing Machinery","day":"23"},{"ddc":["004"],"publisher":"Association for Computing Machinery","day":"26","_id":"12984","title":"Skin-Screen: A computational fabrication framework for color tattoos","article_type":"original","volume":42,"publication":"ACM Transactions on Graphics","keyword":["appearance","modeling","reproduction","tattoo","skin color","gamut mapping","ink-optimization","prosthetic"],"quality_controlled":"1","abstract":[{"lang":"eng","text":"Tattoos are a highly popular medium, with both artistic and medical applications. Although the mechanical process of tattoo application has evolved historically, the results are reliant on the artisanal skill of the artist. This can be especially challenging for some skin tones, or in cases where artists lack experience. We provide the first systematic overview of tattooing as a computational fabrication technique. We built an automated tattooing rig and a recipe for the creation of silicone sheets mimicking realistic skin tones, which allowed us to create an accurate model predicting tattoo appearance. This enables several exciting applications including tattoo previewing, color retargeting, novel ink spectra optimization, color-accurate prosthetics, and more."}],"intvolume":"        42","date_created":"2023-05-16T09:39:14Z","oa":1,"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)"},"year":"2023","issue":"4","date_published":"2023-07-26T00:00:00Z","language":[{"iso":"eng"}],"citation":{"mla":"Piovarci, Michael, et al. “Skin-Screen: A Computational Fabrication Framework for Color Tattoos.” <i>ACM Transactions on Graphics</i>, vol. 42, no. 4, 67, Association for Computing Machinery, 2023, doi:<a href=\"https://doi.org/10.1145/3592432\">10.1145/3592432</a>.","ieee":"M. Piovarci, A. Chapiro, and B. Bickel, “Skin-Screen: A computational fabrication framework for color tattoos,” <i>ACM Transactions on Graphics</i>, vol. 42, no. 4. Association for Computing Machinery, 2023.","short":"M. Piovarci, A. Chapiro, B. Bickel, ACM Transactions on Graphics 42 (2023).","ista":"Piovarci M, Chapiro A, Bickel B. 2023. Skin-Screen: A computational fabrication framework for color tattoos. ACM Transactions on Graphics. 42(4), 67.","ama":"Piovarci M, Chapiro A, Bickel B. Skin-Screen: A computational fabrication framework for color tattoos. <i>ACM Transactions on Graphics</i>. 2023;42(4). doi:<a href=\"https://doi.org/10.1145/3592432\">10.1145/3592432</a>","chicago":"Piovarci, Michael, Alexandre Chapiro, and Bernd Bickel. “Skin-Screen: A Computational Fabrication Framework for Color Tattoos.” <i>ACM Transactions on Graphics</i>. Association for Computing Machinery, 2023. <a href=\"https://doi.org/10.1145/3592432\">https://doi.org/10.1145/3592432</a>.","apa":"Piovarci, M., Chapiro, A., &#38; Bickel, B. (2023). Skin-Screen: A computational fabrication framework for color tattoos. <i>ACM Transactions on Graphics</i>. Los Angeles, CA, United States: Association for Computing Machinery. <a href=\"https://doi.org/10.1145/3592432\">https://doi.org/10.1145/3592432</a>"},"has_accepted_license":"1","article_number":"67","corr_author":"1","project":[{"name":"Perception-Aware Appearance Fabrication","_id":"eb901961-77a9-11ec-83b8-f5c883a62027","grant_number":"M03319"}],"file_date_updated":"2024-04-16T05:52:18Z","scopus_import":"1","month":"07","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","conference":{"end_date":"2023-08-10","start_date":"2023-08-06","location":"Los Angeles, CA, United States","name":"SIGGRAPH: Computer Graphics and Interactive Techniques Conference"},"publication_identifier":{"eissn":["1557-7368"],"issn":["0730-0301"]},"file":[{"file_id":"12985","date_created":"2023-05-16T09:38:25Z","access_level":"open_access","success":1,"content_type":"application/pdf","creator":"mpiovarc","file_name":"Piovarci2023.pdf","date_updated":"2023-05-16T09:38:25Z","checksum":"5f0a6867689e025a661bd0b4fd90b821","relation":"main_file","file_size":30817343},{"success":1,"access_level":"open_access","date_created":"2024-04-16T05:52:18Z","file_id":"15324","content_type":"application/pdf","creator":"dernst","date_updated":"2024-04-16T05:52:18Z","file_name":"2023_ACM_Piovarci.pdf","file_size":30281676,"relation":"main_file","checksum":"6dd371de5b517e5f184f9c2cbea4b8b3"}],"acknowledgement":"We thank Todor Asenov and the Miba Machine Shop for their help in assembling the tattoo machine and manufacturing the substrates. We thank Geysler Rodrigues for the insightful discussions on tattooing practices from a professional artist's perspective. We thank Maria Fernanda Portugal for sharing a doctor's perspective on medical applications of tattoos. This work is graciously supported by the FWF Lise Meitner (Grant M 3319).","acknowledged_ssus":[{"_id":"M-Shop"}],"external_id":{"isi":["001044671300033"]},"status":"public","isi":1,"type":"journal_article","oa_version":"Published Version","publication_status":"published","doi":"10.1145/3592432","article_processing_charge":"Yes (via OA deal)","author":[{"id":"62E473F4-5C99-11EA-A40E-AF823DDC885E","orcid":"0000-0002-5062-4474","first_name":"Michael","full_name":"Piovarci, Michael","last_name":"Piovarci"},{"first_name":"Alexandre","full_name":"Chapiro, Alexandre","last_name":"Chapiro"},{"orcid":"0000-0001-6511-9385","id":"49876194-F248-11E8-B48F-1D18A9856A87","first_name":"Bernd","last_name":"Bickel","full_name":"Bickel, Bernd"}],"department":[{"_id":"BeBi"}],"date_updated":"2025-04-15T07:43:53Z"},{"pmid":1,"ddc":["570"],"day":"17","publisher":"Springer Nature","_id":"13033","title":"Novel stereological method for estimation of cell counts in 3D collagen scaffolds","article_type":"original","volume":13,"keyword":["Multidisciplinary"],"publication":"Scientific Reports","quality_controlled":"1","abstract":[{"lang":"eng","text":"Current methods for assessing cell proliferation in 3D scaffolds rely on changes in metabolic activity or total DNA, however, direct quantification of cell number in 3D scaffolds remains a challenge. To address this issue, we developed an unbiased stereology approach that uses systematic-random sampling and thin focal-plane optical sectioning of the scaffolds followed by estimation of total cell number (StereoCount). This approach was validated against an indirect method for measuring the total DNA (DNA content); and the Bürker counting chamber, the current reference method for quantifying cell number. We assessed the total cell number for cell seeding density (cells per unit volume) across four values and compared the methods in terms of accuracy, ease-of-use and time demands. The accuracy of StereoCount markedly outperformed the DNA content for cases with ~ 10,000 and ~ 125,000 cells/scaffold. For cases with ~ 250,000 and ~ 375,000 cells/scaffold both StereoCount and DNA content showed lower accuracy than the Bürker but did not differ from each other. In terms of ease-of-use, there was a strong advantage for the StereoCount due to output in terms of absolute cell numbers along with the possibility for an overview of cell distribution and future use of automation for high throughput analysis. Taking together, the StereoCount method is an efficient approach for direct cell quantification in 3D collagen scaffolds. Its major benefit is that automated StereoCount could accelerate research using 3D scaffolds focused on drug discovery for a wide variety of human diseases."}],"intvolume":"        13","date_created":"2023-05-19T11:12:25Z","oa":1,"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)"},"issue":"1","year":"2023","date_published":"2023-05-17T00:00:00Z","language":[{"iso":"eng"}],"article_number":"7959","has_accepted_license":"1","citation":{"ama":"Zavadakova A, Vistejnova L, Belinova T, Tichanek F, Bilikova D, Mouton PR. Novel stereological method for estimation of cell counts in 3D collagen scaffolds. <i>Scientific Reports</i>. 2023;13(1). doi:<a href=\"https://doi.org/10.1038/s41598-023-35162-z\">10.1038/s41598-023-35162-z</a>","chicago":"Zavadakova, Anna, Lucie Vistejnova, Tereza Belinova, Filip Tichanek, Dagmar Bilikova, and Peter R. Mouton. “Novel Stereological Method for Estimation of Cell Counts in 3D Collagen Scaffolds.” <i>Scientific Reports</i>. Springer Nature, 2023. <a href=\"https://doi.org/10.1038/s41598-023-35162-z\">https://doi.org/10.1038/s41598-023-35162-z</a>.","apa":"Zavadakova, A., Vistejnova, L., Belinova, T., Tichanek, F., Bilikova, D., &#38; Mouton, P. R. (2023). Novel stereological method for estimation of cell counts in 3D collagen scaffolds. <i>Scientific Reports</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41598-023-35162-z\">https://doi.org/10.1038/s41598-023-35162-z</a>","mla":"Zavadakova, Anna, et al. “Novel Stereological Method for Estimation of Cell Counts in 3D Collagen Scaffolds.” <i>Scientific Reports</i>, vol. 13, no. 1, 7959, Springer Nature, 2023, doi:<a href=\"https://doi.org/10.1038/s41598-023-35162-z\">10.1038/s41598-023-35162-z</a>.","ista":"Zavadakova A, Vistejnova L, Belinova T, Tichanek F, Bilikova D, Mouton PR. 2023. Novel stereological method for estimation of cell counts in 3D collagen scaffolds. Scientific Reports. 13(1), 7959.","ieee":"A. Zavadakova, L. Vistejnova, T. Belinova, F. Tichanek, D. Bilikova, and P. R. Mouton, “Novel stereological method for estimation of cell counts in 3D collagen scaffolds,” <i>Scientific Reports</i>, vol. 13, no. 1. Springer Nature, 2023.","short":"A. Zavadakova, L. Vistejnova, T. Belinova, F. Tichanek, D. Bilikova, P.R. Mouton, Scientific Reports 13 (2023)."},"file_date_updated":"2023-05-22T07:57:37Z","scopus_import":"1","month":"05","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_identifier":{"issn":["2045-2322"]},"external_id":{"isi":["000995271600104"],"pmid":["37198326"]},"related_material":{"link":[{"url":"https://doi.org/10.1038/s41598-023-37265-z","relation":"erratum"}]},"acknowledgement":"The study was supported by Project No. CZ.02.1.01/0.0/0.0/16_019/0000787 “Fighting INfectious Diseases”, awarded by the MEYS CR, financed from EFRR, by the Cooperatio Program, research area DIAG and research area MED/DIAG, by the profiBONE project (TO01000309) benefitting from a € (1.433.000) grant from Iceland, Liechtenstein and Norway through the EEA Grants and the Technology Agency of the Czech Republic and by a Grant (#1926990) to PRM and SRC Biosciences from the National Science Foundation (U.S. Public Health Service). The authors acknowledge the invaluable assistance provided by Iveta Paurova via her support in terms of the provision of laboratory services.","file":[{"creator":"dernst","content_type":"application/pdf","success":1,"access_level":"open_access","date_created":"2023-05-22T07:57:37Z","file_id":"13047","file_size":3055077,"relation":"main_file","checksum":"8c1b769693ff4288df8376e59ad1176d","date_updated":"2023-05-22T07:57:37Z","file_name":"2023_ScientificReports_Zavadakova.pdf"}],"status":"public","isi":1,"oa_version":"Published Version","type":"journal_article","doi":"10.1038/s41598-023-35162-z","publication_status":"published","author":[{"last_name":"Zavadakova","full_name":"Zavadakova, Anna","first_name":"Anna"},{"full_name":"Vistejnova, Lucie","last_name":"Vistejnova","first_name":"Lucie"},{"first_name":"Tereza","id":"0bf89b6a-d28b-11eb-8bd6-f43768e4d368","full_name":"Belinova, Tereza","last_name":"Belinova"},{"full_name":"Tichanek, Filip","last_name":"Tichanek","first_name":"Filip"},{"first_name":"Dagmar","full_name":"Bilikova, Dagmar","last_name":"Bilikova"},{"first_name":"Peter R.","last_name":"Mouton","full_name":"Mouton, Peter R."}],"article_processing_charge":"No","department":[{"_id":"Bio"}],"date_updated":"2025-04-23T08:56:48Z"},{"acknowledgement":"We thank R. Redmer for helpful discussions. M.F. acknowledges support by the Deutsche Forschungsgemeinschaft (DFG) within the FOR 2440. M.B. gratefully acknowledges support by the European Horizon 2020 programme within the Marie Skłodowska-Curie actions (xICE Grant No. 894725) and the NOMIS foundation. A.R. and J.-A.H. acknowledge support form the French National Research Agency (ANR) through the projects POMPEI (Grant No. ANR-16-CE31-0008) and SUPER-ICES (Grant No. ANR-15-CE30-008-01). The ab initio calculations were performed at the NorthGerman Supercomputing Alliance (HLRN) facilities. ","external_id":{"isi":["000974672600001"]},"publication_identifier":{"issn":["2469-9950"],"eissn":["2469-9969"]},"month":"04","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","scopus_import":"1","citation":{"ieee":"M. French, M. Bethkenhagen, A. Ravasio, and J. A. Hernandez, “Ab initio calculation of the reflectivity of molecular fluids under shock compression,” <i>Physical Review B</i>, vol. 107, no. 13. American Physical Society, 2023.","ista":"French M, Bethkenhagen M, Ravasio A, Hernandez JA. 2023. Ab initio calculation of the reflectivity of molecular fluids under shock compression. Physical Review B. 107(13), 134109.","short":"M. French, M. Bethkenhagen, A. Ravasio, J.A. Hernandez, Physical Review B 107 (2023).","mla":"French, Martin, et al. “Ab Initio Calculation of the Reflectivity of Molecular Fluids under Shock Compression.” <i>Physical Review B</i>, vol. 107, no. 13, 134109, American Physical Society, 2023, doi:<a href=\"https://doi.org/10.1103/PhysRevB.107.134109\">10.1103/PhysRevB.107.134109</a>.","apa":"French, M., Bethkenhagen, M., Ravasio, A., &#38; Hernandez, J. A. (2023). Ab initio calculation of the reflectivity of molecular fluids under shock compression. <i>Physical Review B</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevB.107.134109\">https://doi.org/10.1103/PhysRevB.107.134109</a>","chicago":"French, Martin, Mandy Bethkenhagen, Alessandra Ravasio, and Jean Alexis Hernandez. “Ab Initio Calculation of the Reflectivity of Molecular Fluids under Shock Compression.” <i>Physical Review B</i>. American Physical Society, 2023. <a href=\"https://doi.org/10.1103/PhysRevB.107.134109\">https://doi.org/10.1103/PhysRevB.107.134109</a>.","ama":"French M, Bethkenhagen M, Ravasio A, Hernandez JA. Ab initio calculation of the reflectivity of molecular fluids under shock compression. <i>Physical Review B</i>. 2023;107(13). doi:<a href=\"https://doi.org/10.1103/PhysRevB.107.134109\">10.1103/PhysRevB.107.134109</a>"},"article_number":"134109","language":[{"iso":"eng"}],"date_updated":"2023-08-01T14:45:25Z","department":[{"_id":"BiCh"}],"article_processing_charge":"No","author":[{"full_name":"French, Martin","last_name":"French","first_name":"Martin"},{"last_name":"Bethkenhagen","full_name":"Bethkenhagen, Mandy","orcid":"0000-0002-1838-2129","id":"201939f4-803f-11ed-ab7e-d8da4bd1517f","first_name":"Mandy"},{"first_name":"Alessandra","last_name":"Ravasio","full_name":"Ravasio, Alessandra"},{"first_name":"Jean Alexis","full_name":"Hernandez, Jean Alexis","last_name":"Hernandez"}],"publication_status":"published","doi":"10.1103/PhysRevB.107.134109","type":"journal_article","oa_version":"None","isi":1,"status":"public","publication":"Physical Review B","volume":107,"article_type":"original","title":"Ab initio calculation of the reflectivity of molecular fluids under shock compression","_id":"13039","publisher":"American Physical Society","day":"01","date_published":"2023-04-01T00:00:00Z","year":"2023","issue":"13","abstract":[{"lang":"eng","text":"We calculate reflectivities of dynamically compressed water, water-ethanol mixtures, and ammonia at infrared and optical wavelengths with density functional theory and molecular dynamics simulations. The influence of the exchange-correlation functional on the results is examined in detail. Our findings indicate that the consistent use of the HSE hybrid functional reproduces experimental results much better than the commonly used PBE functional. The HSE functional offers not only a more accurate description of the electronic band gap but also shifts the onset of molecular dissociation in the molecular dynamics simulations to significantly higher pressures. We also highlight the importance of using accurate reference standards in reflectivity experiments and reanalyze infrared and optical reflectivity data from recent experiments. Thus, our combined theoretical and experimental work explains and resolves lingering discrepancies between calculations and measurements for the investigated molecular substances under shock compression."}],"intvolume":"       107","date_created":"2023-05-21T22:01:04Z","quality_controlled":"1"},{"publication_identifier":{"issn":["1864-5631"],"eissn":["1864-564X"]},"external_id":{"isi":["000985051300001"],"pmid":["36970847"]},"acknowledgement":"The authors (N.L.F and R.B.J) would like to acknowledge the funding contributions of Shell and the EPRSC via I–Case studentships (grants no. EP/V519662/1 and EP/R511870/1 respectively). T.I would like to thank the ERC advanced Investigator Grant for CPG (EC H2020 835073). Thank you to Zhen Wang from the University of Cambridge for measuring GPC, the Yusuf Hamied Department of Chemistry's mass spectrometry service for MS measurements and analysis and Dr Andrew Bond from the University of Cambridge for XRD measurement and analysis.","file":[{"date_updated":"2023-11-14T11:27:16Z","file_name":"2023_ChemSusChem_Farag.pdf","checksum":"efa0713289995af83a2147b3e8e1d6a6","relation":"main_file","file_size":1168683,"file_id":"14532","date_created":"2023-11-14T11:27:16Z","success":1,"access_level":"open_access","creator":"dernst","content_type":"application/pdf"}],"month":"07","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file_date_updated":"2023-11-14T11:27:16Z","scopus_import":"1","language":[{"iso":"eng"}],"article_number":"e202300128","has_accepted_license":"1","citation":{"short":"N.L. Farag, R.B. Jethwa, A.E. Beardmore, T. Insinna, C.A. O’Keefe, P.A.A. Klusener, C.P. Grey, D.S. Wright, ChemSusChem 16 (2023).","ieee":"N. L. Farag <i>et al.</i>, “Triarylamines as catholytes in aqueous organic redox flow batteries,” <i>ChemSusChem</i>, vol. 16, no. 13. Wiley, 2023.","ista":"Farag NL, Jethwa RB, Beardmore AE, Insinna T, O’Keefe CA, Klusener PAA, Grey CP, Wright DS. 2023. Triarylamines as catholytes in aqueous organic redox flow batteries. ChemSusChem. 16(13), e202300128.","mla":"Farag, Nadia L., et al. “Triarylamines as Catholytes in Aqueous Organic Redox Flow Batteries.” <i>ChemSusChem</i>, vol. 16, no. 13, e202300128, Wiley, 2023, doi:<a href=\"https://doi.org/10.1002/cssc.202300128\">10.1002/cssc.202300128</a>.","ama":"Farag NL, Jethwa RB, Beardmore AE, et al. Triarylamines as catholytes in aqueous organic redox flow batteries. <i>ChemSusChem</i>. 2023;16(13). doi:<a href=\"https://doi.org/10.1002/cssc.202300128\">10.1002/cssc.202300128</a>","apa":"Farag, N. L., Jethwa, R. B., Beardmore, A. E., Insinna, T., O’Keefe, C. A., Klusener, P. A. A., … Wright, D. S. (2023). Triarylamines as catholytes in aqueous organic redox flow batteries. <i>ChemSusChem</i>. Wiley. <a href=\"https://doi.org/10.1002/cssc.202300128\">https://doi.org/10.1002/cssc.202300128</a>","chicago":"Farag, Nadia L., Rajesh B Jethwa, Alice E. Beardmore, Teresa Insinna, Christopher A. O’Keefe, Peter A.A. Klusener, Clare P. Grey, and Dominic S. Wright. “Triarylamines as Catholytes in Aqueous Organic Redox Flow Batteries.” <i>ChemSusChem</i>. Wiley, 2023. <a href=\"https://doi.org/10.1002/cssc.202300128\">https://doi.org/10.1002/cssc.202300128</a>."},"department":[{"_id":"StFr"}],"date_updated":"2023-11-14T11:28:23Z","author":[{"first_name":"Nadia L.","last_name":"Farag","full_name":"Farag, Nadia L."},{"first_name":"Rajesh B","id":"4cc538d5-803f-11ed-ab7e-8139573aad8f","orcid":"0000-0002-0404-4356","full_name":"Jethwa, Rajesh B","last_name":"Jethwa"},{"first_name":"Alice E.","last_name":"Beardmore","full_name":"Beardmore, Alice E."},{"last_name":"Insinna","full_name":"Insinna, Teresa","first_name":"Teresa"},{"last_name":"O'Keefe","full_name":"O'Keefe, Christopher A.","first_name":"Christopher A."},{"full_name":"Klusener, Peter A.A.","last_name":"Klusener","first_name":"Peter A.A."},{"full_name":"Grey, Clare P.","last_name":"Grey","first_name":"Clare P."},{"last_name":"Wright","full_name":"Wright, Dominic S.","first_name":"Dominic S."}],"article_processing_charge":"Yes (in subscription journal)","oa_version":"Published Version","type":"journal_article","doi":"10.1002/cssc.202300128","publication_status":"published","status":"public","isi":1,"publication":"ChemSusChem","title":"Triarylamines as catholytes in aqueous organic redox flow batteries","article_type":"original","volume":16,"day":"06","publisher":"Wiley","_id":"13041","pmid":1,"ddc":["540"],"issue":"13","year":"2023","date_published":"2023-07-06T00:00:00Z","oa":1,"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)"},"quality_controlled":"1","abstract":[{"text":"A series of triarylamines was synthesised and screened for their suitability as catholytes in redox flow batteries using cyclic voltammetry (CV). Tris(4-aminophenyl)amine was found to be the strongest candidate. Solubility and initial electrochemical performance were promising; however, polymerisation was observed during electrochemical cycling leading to rapid capacity fade prescribed to a loss of accessible active material and the limitation of ion transport processes within the cell. A mixed electrolyte system of H3PO4 and HCl was found to inhibit polymerisation producing oligomers that consumed less active material reducing rates of degradation in the redox flow battery. Under these conditions Coulombic efficiency improved by over 4 %, the maximum number of cycles more than quadrupled and an additional theoretical capacity of 20 % was accessed. This paper is, to our knowledge, the first example of triarylamines as catholytes in all-aqueous redox flow batteries and emphasises the impact supporting electrolytes can have on electrochemical performance.","lang":"eng"}],"date_created":"2023-05-21T22:01:05Z","intvolume":"        16"},{"status":"public","isi":1,"type":"journal_article","oa_version":"Published Version","publication_status":"published","doi":"10.37236/11471","author":[{"full_name":"Anastos, Michael","last_name":"Anastos","id":"0b2a4358-bb35-11ec-b7b9-e3279b593dbb","first_name":"Michael"}],"article_processing_charge":"No","department":[{"_id":"MaKw"}],"date_updated":"2024-10-09T21:05:26Z","language":[{"iso":"eng"}],"citation":{"mla":"Anastos, Michael. “A Note on Long Cycles in Sparse Random Graphs.” <i>Electronic Journal of Combinatorics</i>, vol. 30, no. 2, P2.21, Electronic Journal of Combinatorics, 2023, doi:<a href=\"https://doi.org/10.37236/11471\">10.37236/11471</a>.","ista":"Anastos M. 2023. A note on long cycles in sparse random graphs. Electronic Journal of Combinatorics. 30(2), P2.21.","short":"M. Anastos, Electronic Journal of Combinatorics 30 (2023).","ieee":"M. Anastos, “A note on long cycles in sparse random graphs,” <i>Electronic Journal of Combinatorics</i>, vol. 30, no. 2. Electronic Journal of Combinatorics, 2023.","ama":"Anastos M. A note on long cycles in sparse random graphs. <i>Electronic Journal of Combinatorics</i>. 2023;30(2). doi:<a href=\"https://doi.org/10.37236/11471\">10.37236/11471</a>","chicago":"Anastos, Michael. “A Note on Long Cycles in Sparse Random Graphs.” <i>Electronic Journal of Combinatorics</i>. Electronic Journal of Combinatorics, 2023. <a href=\"https://doi.org/10.37236/11471\">https://doi.org/10.37236/11471</a>.","apa":"Anastos, M. (2023). A note on long cycles in sparse random graphs. <i>Electronic Journal of Combinatorics</i>. Electronic Journal of Combinatorics. <a href=\"https://doi.org/10.37236/11471\">https://doi.org/10.37236/11471</a>"},"article_number":"P2.21","has_accepted_license":"1","corr_author":"1","file_date_updated":"2023-05-22T07:43:19Z","scopus_import":"1","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","month":"05","publication_identifier":{"eissn":["1077-8926"]},"acknowledgement":"We would like to thank the reviewers for their helpful comments and remarks.","file":[{"file_id":"13046","date_created":"2023-05-22T07:43:19Z","success":1,"access_level":"open_access","creator":"dernst","content_type":"application/pdf","file_name":"2023_JourCombinatorics_Anastos.pdf","date_updated":"2023-05-22T07:43:19Z","checksum":"6269ed3b3eded6536d3d9d6baad2d5b9","relation":"main_file","file_size":448736}],"external_id":{"isi":["000988285500001"],"arxiv":["2105.13828"]},"quality_controlled":"1","intvolume":"        30","date_created":"2023-05-21T22:01:05Z","abstract":[{"text":"Let Lc,n denote the size of the longest cycle in G(n, c/n),c >1 constant.  We show that there exists a continuous function f(c) such that Lc,n/n→f(c) a.s.  for c>20,  thus  extending  a  result  of  Frieze  and  the  author  to  smaller  values  of c. Thereafter,  for c>20,  we  determine  the  limit  of  the  probability  that G(n, c/n)contains  cycles  of  every  length  between  the  length  of  its  shortest  and  its  longest cycles as n→∞.","lang":"eng"}],"oa":1,"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)"},"year":"2023","issue":"2","date_published":"2023-05-05T00:00:00Z","ddc":["510"],"publisher":"Electronic Journal of Combinatorics","arxiv":1,"day":"05","_id":"13042","title":"A note on long cycles in sparse random graphs","article_type":"original","volume":30,"publication":"Electronic Journal of Combinatorics"},{"quality_controlled":"1","abstract":[{"lang":"eng","text":"We derive a weak-strong uniqueness principle for BV solutions to multiphase mean curvature flow of triple line clusters in three dimensions. Our proof is based on the explicit construction\r\nof a gradient flow calibration in the sense of the recent work of Fischer et al. (2020) for any such\r\ncluster. This extends the two-dimensional construction to the three-dimensional case of surfaces\r\nmeeting along triple junctions."}],"date_created":"2023-05-21T22:01:06Z","intvolume":"        25","oa":1,"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)"},"issue":"1","year":"2023","date_published":"2023-04-20T00:00:00Z","ddc":["510"],"day":"20","publisher":"EMS Press","arxiv":1,"_id":"13043","title":"Weak-strong uniqueness for the mean curvature flow of double bubbles","article_type":"original","ec_funded":1,"volume":25,"publication":"Interfaces and Free Boundaries","status":"public","isi":1,"oa_version":"Published Version","type":"journal_article","doi":"10.4171/IFB/484","publication_status":"published","article_processing_charge":"No","author":[{"last_name":"Hensel","full_name":"Hensel, Sebastian","id":"4D23B7DA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-7252-8072","first_name":"Sebastian"},{"first_name":"Tim","last_name":"Laux","full_name":"Laux, Tim"}],"department":[{"_id":"JuFi"}],"date_updated":"2025-04-14T09:35:57Z","language":[{"iso":"eng"}],"has_accepted_license":"1","citation":{"ama":"Hensel S, Laux T. Weak-strong uniqueness for the mean curvature flow of double bubbles. <i>Interfaces and Free Boundaries</i>. 2023;25(1):37-107. doi:<a href=\"https://doi.org/10.4171/IFB/484\">10.4171/IFB/484</a>","apa":"Hensel, S., &#38; Laux, T. (2023). Weak-strong uniqueness for the mean curvature flow of double bubbles. <i>Interfaces and Free Boundaries</i>. EMS Press. <a href=\"https://doi.org/10.4171/IFB/484\">https://doi.org/10.4171/IFB/484</a>","chicago":"Hensel, Sebastian, and Tim Laux. “Weak-Strong Uniqueness for the Mean Curvature Flow of Double Bubbles.” <i>Interfaces and Free Boundaries</i>. EMS Press, 2023. <a href=\"https://doi.org/10.4171/IFB/484\">https://doi.org/10.4171/IFB/484</a>.","ieee":"S. Hensel and T. Laux, “Weak-strong uniqueness for the mean curvature flow of double bubbles,” <i>Interfaces and Free Boundaries</i>, vol. 25, no. 1. EMS Press, pp. 37–107, 2023.","short":"S. Hensel, T. Laux, Interfaces and Free Boundaries 25 (2023) 37–107.","ista":"Hensel S, Laux T. 2023. Weak-strong uniqueness for the mean curvature flow of double bubbles. Interfaces and Free Boundaries. 25(1), 37–107.","mla":"Hensel, Sebastian, and Tim Laux. “Weak-Strong Uniqueness for the Mean Curvature Flow of Double Bubbles.” <i>Interfaces and Free Boundaries</i>, vol. 25, no. 1, EMS Press, 2023, pp. 37–107, doi:<a href=\"https://doi.org/10.4171/IFB/484\">10.4171/IFB/484</a>."},"project":[{"_id":"0aa76401-070f-11eb-9043-b5bb049fa26d","call_identifier":"H2020","name":"Bridging Scales in Random Materials","grant_number":"948819"}],"file_date_updated":"2023-05-22T07:24:13Z","corr_author":"1","scopus_import":"1","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","month":"04","publication_identifier":{"issn":["1463-9963"],"eissn":["1463-9971"]},"external_id":{"arxiv":["2108.01733"],"isi":["000975817300002"]},"file":[{"file_size":867876,"checksum":"622422484810441e48f613e968c7e7a4","relation":"main_file","file_name":"2023_Interfaces_Hensel.pdf","date_updated":"2023-05-22T07:24:13Z","content_type":"application/pdf","creator":"dernst","date_created":"2023-05-22T07:24:13Z","success":1,"access_level":"open_access","file_id":"13045"}],"related_material":{"record":[{"relation":"earlier_version","status":"public","id":"10013"}]},"page":"37-107","acknowledgement":"This project has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (grant agreement no. 948819), and from the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany’s Excellence Strategy – EXC-2047/1 – 390685813."},{"author":[{"first_name":"André","full_name":"Lieutier, André","last_name":"Lieutier"},{"last_name":"Wintraecken","full_name":"Wintraecken, Mathijs","id":"307CFBC8-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-7472-2220","first_name":"Mathijs"}],"article_processing_charge":"No","date_updated":"2025-09-09T12:26:49Z","department":[{"_id":"HeEd"}],"isi":1,"status":"public","doi":"10.1145/3564246.3585113","publication_status":"published","oa_version":"Preprint","type":"conference","conference":{"end_date":"2023-06-23","name":"STOC: Symposium on Theory of Computing","start_date":"2023-06-20","location":"Orlando, FL, United States"},"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","month":"06","external_id":{"arxiv":["2303.04014"],"isi":["001064640700143"]},"page":"1768-1776","acknowledgement":"We are greatly indebted to Erin Chambers for posing a number of questions that eventually led to this paper. We would also like to thank the other organizers of the workshop on ‘Algorithms\r\nfor the medial axis’. We are also indebted to Tatiana Ezubova for helping with the search for and translation of Russian literature. The second author thanks all members of the Edelsbrunner and Datashape groups for the atmosphere in which the research was conducted.\r\nThe research leading to these results has received funding from the European Research Council (ERC) under the European Union’s Seventh Framework Programme (FP/2007-2013) / ERC Grant Agreement No. 339025 GUDHI (Algorithmic Foundations of Geometry Understanding in Higher Dimensions). Supported by the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No. 754411. The Austrian science fund (FWF) M-3073.","publication_identifier":{"isbn":["9781450399135"]},"citation":{"chicago":"Lieutier, André, and Mathijs Wintraecken. “Hausdorff and Gromov-Hausdorff Stable Subsets of the Medial Axis.” In <i>Proceedings of the 55th Annual ACM Symposium on Theory of Computing</i>, 1768–76. Association for Computing Machinery, 2023. <a href=\"https://doi.org/10.1145/3564246.3585113\">https://doi.org/10.1145/3564246.3585113</a>.","apa":"Lieutier, A., &#38; Wintraecken, M. (2023). Hausdorff and Gromov-Hausdorff stable subsets of the medial axis. In <i>Proceedings of the 55th Annual ACM Symposium on Theory of Computing</i> (pp. 1768–1776). Orlando, FL, United States: Association for Computing Machinery. <a href=\"https://doi.org/10.1145/3564246.3585113\">https://doi.org/10.1145/3564246.3585113</a>","ama":"Lieutier A, Wintraecken M. Hausdorff and Gromov-Hausdorff stable subsets of the medial axis. In: <i>Proceedings of the 55th Annual ACM Symposium on Theory of Computing</i>. Association for Computing Machinery; 2023:1768-1776. doi:<a href=\"https://doi.org/10.1145/3564246.3585113\">10.1145/3564246.3585113</a>","mla":"Lieutier, André, and Mathijs Wintraecken. “Hausdorff and Gromov-Hausdorff Stable Subsets of the Medial Axis.” <i>Proceedings of the 55th Annual ACM Symposium on Theory of Computing</i>, Association for Computing Machinery, 2023, pp. 1768–76, doi:<a href=\"https://doi.org/10.1145/3564246.3585113\">10.1145/3564246.3585113</a>.","short":"A. Lieutier, M. Wintraecken, in:, Proceedings of the 55th Annual ACM Symposium on Theory of Computing, Association for Computing Machinery, 2023, pp. 1768–1776.","ista":"Lieutier A, Wintraecken M. 2023. Hausdorff and Gromov-Hausdorff stable subsets of the medial axis. Proceedings of the 55th Annual ACM Symposium on Theory of Computing. STOC: Symposium on Theory of Computing, 1768–1776.","ieee":"A. Lieutier and M. Wintraecken, “Hausdorff and Gromov-Hausdorff stable subsets of the medial axis,” in <i>Proceedings of the 55th Annual ACM Symposium on Theory of Computing</i>, Orlando, FL, United States, 2023, pp. 1768–1776."},"language":[{"iso":"eng"}],"scopus_import":"1","project":[{"_id":"260C2330-B435-11E9-9278-68D0E5697425","name":"ISTplus - Postdoctoral Fellowships","call_identifier":"H2020","grant_number":"754411"},{"name":"Learning and triangulating manifolds via collapses","_id":"fc390959-9c52-11eb-aca3-afa58bd282b2","grant_number":"M03073"}],"corr_author":"1","oa":1,"date_published":"2023-06-02T00:00:00Z","year":"2023","main_file_link":[{"url":"https://arxiv.org/abs/2303.04014","open_access":"1"}],"abstract":[{"text":"In this paper we introduce a pruning of the medial axis called the (λ,α)-medial axis (axλα). We prove that the (λ,α)-medial axis of a set K is stable in a Gromov-Hausdorff sense under weak assumptions. More formally we prove that if K and K′ are close in the Hausdorff (dH) sense then the (λ,α)-medial axes of K and K′ are close as metric spaces, that is the Gromov-Hausdorff distance (dGH) between the two is 1/4-Hölder in the sense that dGH (axλα(K),axλα(K′)) ≲ dH(K,K′)1/4. The Hausdorff distance between the two medial axes is also bounded, by dH (axλα(K),λα(K′)) ≲ dH(K,K′)1/2. These quantified stability results provide guarantees for practical computations of medial axes from approximations. Moreover, they provide key ingredients for studying the computability of the medial axis in the context of computable analysis.","lang":"eng"}],"date_created":"2023-05-22T08:02:02Z","quality_controlled":"1","title":"Hausdorff and Gromov-Hausdorff stable subsets of the medial axis","ec_funded":1,"publication":"Proceedings of the 55th Annual ACM Symposium on Theory of Computing","_id":"13048","day":"02","arxiv":1,"publisher":"Association for Computing Machinery"},{"citation":{"apa":"Leithner, A. F., Merrin, J., &#38; Sixt, M. K. (2023). En-Face Imaging of T Cell-Dendritic Cell Immunological Synapses. In C. Baldari &#38; M. Dustin (Eds.), <i>The Immune Synapse</i> (Vol. 2654, pp. 137–147). New York, NY: Springer Nature. <a href=\"https://doi.org/10.1007/978-1-0716-3135-5_9\">https://doi.org/10.1007/978-1-0716-3135-5_9</a>","chicago":"Leithner, Alexander F, Jack Merrin, and Michael K Sixt. “En-Face Imaging of T Cell-Dendritic Cell Immunological Synapses.” In <i>The Immune Synapse</i>, edited by Cosima Baldari and Michael Dustin, 2654:137–47. MIMB. New York, NY: Springer Nature, 2023. <a href=\"https://doi.org/10.1007/978-1-0716-3135-5_9\">https://doi.org/10.1007/978-1-0716-3135-5_9</a>.","ama":"Leithner AF, Merrin J, Sixt MK. En-Face Imaging of T Cell-Dendritic Cell Immunological Synapses. In: Baldari C, Dustin M, eds. <i>The Immune Synapse</i>. Vol 2654. MIMB. New York, NY: Springer Nature; 2023:137-147. doi:<a href=\"https://doi.org/10.1007/978-1-0716-3135-5_9\">10.1007/978-1-0716-3135-5_9</a>","ista":"Leithner AF, Merrin J, Sixt MK. 2023.En-Face Imaging of T Cell-Dendritic Cell Immunological Synapses. In: The Immune Synapse. Methods in Molecular Biology, vol. 2654, 137–147.","short":"A.F. Leithner, J. Merrin, M.K. Sixt, in:, C. Baldari, M. Dustin (Eds.), The Immune Synapse, Springer Nature, New York, NY, 2023, pp. 137–147.","ieee":"A. F. Leithner, J. Merrin, and M. K. Sixt, “En-Face Imaging of T Cell-Dendritic Cell Immunological Synapses,” in <i>The Immune Synapse</i>, vol. 2654, C. Baldari and M. Dustin, Eds. New York, NY: Springer Nature, 2023, pp. 137–147.","mla":"Leithner, Alexander F., et al. “En-Face Imaging of T Cell-Dendritic Cell Immunological Synapses.” <i>The Immune Synapse</i>, edited by Cosima Baldari and Michael Dustin, vol. 2654, Springer Nature, 2023, pp. 137–47, doi:<a href=\"https://doi.org/10.1007/978-1-0716-3135-5_9\">10.1007/978-1-0716-3135-5_9</a>."},"language":[{"iso":"eng"}],"scopus_import":"1","project":[{"grant_number":"724373","name":"Cellular Navigation Along Spatial Gradients","_id":"25FE9508-B435-11E9-9278-68D0E5697425","call_identifier":"H2020"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"04","acknowledged_ssus":[{"_id":"Bio"},{"_id":"NanoFab"},{"_id":"M-Shop"}],"external_id":{"pmid":["37106180"]},"acknowledgement":"A.L. was funded by an Erwin Schrödinger postdoctoral fellowship of the Austrian Science Fund (FWF, project number: J4542-B) and is an EMBO non-stipendiary postdoctoral fellow. This work was supported by a European Research Council grant ERC-CoG-72437 to M.S. We thank the Imaging & Optics facility, the Nanofabrication facility, and the Miba Machine Shop of ISTA for their excellent support.","page":"137-147","place":"New York, NY","publication_identifier":{"issn":["1064-3745"],"eisbn":["9781071631355"],"isbn":["9781071631348"],"eissn":["1940-6029"]},"status":"public","doi":"10.1007/978-1-0716-3135-5_9","publication_status":"published","oa_version":"None","type":"book_chapter","article_processing_charge":"No","author":[{"first_name":"Alexander F","id":"3B1B77E4-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-1073-744X","last_name":"Leithner","full_name":"Leithner, Alexander F"},{"last_name":"Merrin","full_name":"Merrin, Jack","first_name":"Jack","orcid":"0000-0001-5145-4609","id":"4515C308-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Sixt","full_name":"Sixt, Michael K","orcid":"0000-0002-6620-9179","id":"41E9FBEA-F248-11E8-B48F-1D18A9856A87","first_name":"Michael K"}],"date_updated":"2025-04-14T07:42:07Z","department":[{"_id":"MiSi"},{"_id":"NanoFab"}],"pmid":1,"editor":[{"full_name":"Baldari, Cosima","last_name":"Baldari","first_name":"Cosima"},{"first_name":"Michael","full_name":"Dustin, Michael","last_name":"Dustin"}],"_id":"13052","day":"28","publisher":"Springer Nature","volume":2654,"title":"En-Face Imaging of T Cell-Dendritic Cell Immunological Synapses","ec_funded":1,"publication":"The Immune Synapse","intvolume":"      2654","date_created":"2023-05-22T08:41:48Z","abstract":[{"text":"Imaging of the immunological synapse (IS) between dendritic cells (DCs) and T cells in suspension is hampered by suboptimal alignment of cell-cell contacts along the vertical imaging plane. This requires optical sectioning that often results in unsatisfactory resolution in time and space. Here, we present a workflow where DCs and T cells are confined between a layer of glass and polydimethylsiloxane (PDMS) that orients the cells along one, horizontal imaging plane, allowing for fast en-face-imaging of the DC-T cell IS.","lang":"eng"}],"series_title":"MIMB","quality_controlled":"1","date_published":"2023-04-28T00:00:00Z","alternative_title":["Methods in Molecular Biology"],"year":"2023"},{"ddc":["510"],"publisher":"Mathematical Sciences Publishers","arxiv":1,"day":"12","_id":"13091","article_type":"original","title":"Free rational curves on low degree hypersurfaces and the circle method","volume":17,"publication":"Algebra and Number Theory","quality_controlled":"1","intvolume":"        17","abstract":[{"text":"We use a function field version of the Hardy–Littlewood circle method to study the locus of free rational curves on an arbitrary smooth projective hypersurface of sufficiently low degree. On the one hand this allows us to bound the dimension of the singular locus of the moduli space of rational curves on such hypersurfaces and, on the other hand, it sheds light on Peyre’s reformulation of the Batyrev–Manin conjecture in terms of slopes with respect to the tangent bundle.","lang":"eng"}],"date_created":"2023-05-28T22:01:02Z","oa":1,"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)"},"year":"2023","issue":"3","date_published":"2023-04-12T00:00:00Z","language":[{"iso":"eng"}],"citation":{"ama":"Browning TD, Sawin W. Free rational curves on low degree hypersurfaces and the circle method. <i>Algebra and Number Theory</i>. 2023;17(3):719-748. doi:<a href=\"https://doi.org/10.2140/ant.2023.17.719\">10.2140/ant.2023.17.719</a>","chicago":"Browning, Timothy D, and Will Sawin. “Free Rational Curves on Low Degree Hypersurfaces and the Circle Method.” <i>Algebra and Number Theory</i>. Mathematical Sciences Publishers, 2023. <a href=\"https://doi.org/10.2140/ant.2023.17.719\">https://doi.org/10.2140/ant.2023.17.719</a>.","apa":"Browning, T. D., &#38; Sawin, W. (2023). Free rational curves on low degree hypersurfaces and the circle method. <i>Algebra and Number Theory</i>. Mathematical Sciences Publishers. <a href=\"https://doi.org/10.2140/ant.2023.17.719\">https://doi.org/10.2140/ant.2023.17.719</a>","mla":"Browning, Timothy D., and Will Sawin. “Free Rational Curves on Low Degree Hypersurfaces and the Circle Method.” <i>Algebra and Number Theory</i>, vol. 17, no. 3, Mathematical Sciences Publishers, 2023, pp. 719–48, doi:<a href=\"https://doi.org/10.2140/ant.2023.17.719\">10.2140/ant.2023.17.719</a>.","ieee":"T. D. Browning and W. Sawin, “Free rational curves on low degree hypersurfaces and the circle method,” <i>Algebra and Number Theory</i>, vol. 17, no. 3. Mathematical Sciences Publishers, pp. 719–748, 2023.","ista":"Browning TD, Sawin W. 2023. Free rational curves on low degree hypersurfaces and the circle method. Algebra and Number Theory. 17(3), 719–748.","short":"T.D. Browning, W. Sawin, Algebra and Number Theory 17 (2023) 719–748."},"has_accepted_license":"1","corr_author":"1","file_date_updated":"2023-05-30T08:05:22Z","project":[{"grant_number":"EP-P026710-2","name":"Between rational and integral points","_id":"26A8D266-B435-11E9-9278-68D0E5697425"}],"scopus_import":"1","month":"04","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","publication_identifier":{"issn":["1937-0652"],"eissn":["1944-7833"]},"page":"719-748","acknowledgement":"The authors are grateful to Paul Nelson, Per Salberger and Jason Starr for useful comments. While working on this paper the first author was supported by EPRSC grant EP/P026710/1. The research was partially conducted during the period the second author served as a Clay Research Fellow, and partially conducted during the period he was supported by Dr. Max Rössler, the Walter Haefner Foundation and the ETH Zurich Foundation.","file":[{"date_updated":"2023-05-30T08:05:22Z","file_name":"2023_AlgebraNumberTheory_Browning.pdf","file_size":1430719,"relation":"main_file","checksum":"5d5d67b235905650e33cf7065d7583b4","success":1,"access_level":"open_access","date_created":"2023-05-30T08:05:22Z","file_id":"13101","content_type":"application/pdf","creator":"dernst"}],"external_id":{"arxiv":["1810.06882"],"isi":["000996014700004"]},"status":"public","isi":1,"type":"journal_article","oa_version":"Published Version","publication_status":"published","doi":"10.2140/ant.2023.17.719","article_processing_charge":"No","author":[{"id":"35827D50-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8314-0177","first_name":"Timothy D","full_name":"Browning, Timothy D","last_name":"Browning"},{"first_name":"Will","full_name":"Sawin, Will","last_name":"Sawin"}],"department":[{"_id":"TiBr"}],"date_updated":"2025-04-14T09:25:44Z"},{"status":"public","isi":1,"type":"journal_article","oa_version":"Published Version","publication_status":"published","doi":"10.1021/acsami.3c00625","author":[{"first_name":"Bingfei","full_name":"Nan, Bingfei","last_name":"Nan"},{"first_name":"Xuan","full_name":"Song, Xuan","last_name":"Song"},{"orcid":"0000-0002-9515-4277","id":"9E331C2E-9F27-11E9-AE48-5033E6697425","first_name":"Cheng","full_name":"Chang, Cheng","last_name":"Chang"},{"last_name":"Xiao","full_name":"Xiao, Ke","first_name":"Ke"},{"full_name":"Zhang, Yu","last_name":"Zhang","first_name":"Yu"},{"first_name":"Linlin","last_name":"Yang","full_name":"Yang, Linlin"},{"first_name":"Sharona","id":"03a7e858-01b1-11ec-8b71-99ae6c4a05bc","last_name":"Horta","full_name":"Horta, Sharona"},{"full_name":"Li, Junshan","last_name":"Li","first_name":"Junshan"},{"first_name":"Khak Ho","last_name":"Lim","full_name":"Lim, Khak Ho"},{"last_name":"Ibáñez","full_name":"Ibáñez, Maria","id":"43C61214-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5013-2843","first_name":"Maria"},{"first_name":"Andreu","last_name":"Cabot","full_name":"Cabot, Andreu"}],"article_processing_charge":"No","department":[{"_id":"MaIb"}],"date_updated":"2025-04-14T09:29:33Z","language":[{"iso":"eng"}],"citation":{"ama":"Nan B, Song X, Chang C, et al. Bottom-up synthesis of SnTe-based thermoelectric composites. <i>ACS Applied Materials and Interfaces</i>. 2023;15(19):23380–23389. doi:<a href=\"https://doi.org/10.1021/acsami.3c00625\">10.1021/acsami.3c00625</a>","apa":"Nan, B., Song, X., Chang, C., Xiao, K., Zhang, Y., Yang, L., … Cabot, A. (2023). Bottom-up synthesis of SnTe-based thermoelectric composites. <i>ACS Applied Materials and Interfaces</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/acsami.3c00625\">https://doi.org/10.1021/acsami.3c00625</a>","chicago":"Nan, Bingfei, Xuan Song, Cheng Chang, Ke Xiao, Yu Zhang, Linlin Yang, Sharona Horta, et al. “Bottom-up Synthesis of SnTe-Based Thermoelectric Composites.” <i>ACS Applied Materials and Interfaces</i>. American Chemical Society, 2023. <a href=\"https://doi.org/10.1021/acsami.3c00625\">https://doi.org/10.1021/acsami.3c00625</a>.","short":"B. Nan, X. Song, C. Chang, K. Xiao, Y. Zhang, L. Yang, S. Horta, J. Li, K.H. Lim, M. Ibáñez, A. Cabot, ACS Applied Materials and Interfaces 15 (2023) 23380–23389.","ista":"Nan B, Song X, Chang C, Xiao K, Zhang Y, Yang L, Horta S, Li J, Lim KH, Ibáñez M, Cabot A. 2023. Bottom-up synthesis of SnTe-based thermoelectric composites. ACS Applied Materials and Interfaces. 15(19), 23380–23389.","ieee":"B. Nan <i>et al.</i>, “Bottom-up synthesis of SnTe-based thermoelectric composites,” <i>ACS Applied Materials and Interfaces</i>, vol. 15, no. 19. American Chemical Society, pp. 23380–23389, 2023.","mla":"Nan, Bingfei, et al. “Bottom-up Synthesis of SnTe-Based Thermoelectric Composites.” <i>ACS Applied Materials and Interfaces</i>, vol. 15, no. 19, American Chemical Society, 2023, pp. 23380–23389, doi:<a href=\"https://doi.org/10.1021/acsami.3c00625\">10.1021/acsami.3c00625</a>."},"has_accepted_license":"1","corr_author":"1","project":[{"_id":"9B8804FC-BA93-11EA-9121-9846C619BF3A","name":"Bottom-up Engineering for Thermoelectric Applications","grant_number":"M02889"}],"file_date_updated":"2023-05-30T07:38:44Z","scopus_import":"1","month":"05","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","publication_identifier":{"eissn":["1944-8252"],"issn":["1944-8244"]},"page":"23380–23389","acknowledgement":"Open Access is funded by the Austrian Science Fund (FWF). We thank Generalitat de Catalunya AGAUR─2021 SGR 01581 for financial support. B.F.N., K.X., and L.L.Y. thank the China Scholarship Council (CSC) for the scholarship support. C.C. acknowledges funding from the FWF “Lise Meitner Fellowship” grant agreement M 2889-N. J.S.L is grateful to the Science and Technology Department of Sichuan Province for the project no. 22NSFSC0966. K.H.L. was supported by the Institute of Zhejiang University-Quzhou (IZQ2021RCZX003). M.I. acknowledges the financial support from IST Austria.","file":[{"relation":"main_file","checksum":"23893be46763c4c78daacddd019de821","file_size":5640829,"file_name":"2023_ACSAppliedMaterials_Nan.pdf","date_updated":"2023-05-30T07:38:44Z","creator":"dernst","content_type":"application/pdf","file_id":"13099","access_level":"open_access","success":1,"date_created":"2023-05-30T07:38:44Z"}],"external_id":{"isi":["000985497900001"],"pmid":["37141543"]},"quality_controlled":"1","abstract":[{"lang":"eng","text":"There is a need for the development of lead-free thermoelectric materials for medium-/high-temperature applications. Here, we report a thiol-free tin telluride (SnTe) precursor that can be thermally decomposed to produce SnTe crystals with sizes ranging from tens to several hundreds of nanometers. We further engineer SnTe–Cu2SnTe3 nanocomposites with a homogeneous phase distribution by decomposing the liquid SnTe precursor containing a dispersion of Cu1.5Te colloidal nanoparticles. The presence of Cu within the SnTe and the segregated semimetallic Cu2SnTe3 phase effectively improves the electrical conductivity of SnTe while simultaneously reducing the lattice thermal conductivity without compromising the Seebeck coefficient. Overall, power factors up to 3.63 mW m–1 K–2 and thermoelectric figures of merit up to 1.04 are obtained at 823 K, which represent a 167% enhancement compared with pristine SnTe."}],"date_created":"2023-05-28T22:01:03Z","intvolume":"        15","oa":1,"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)"},"year":"2023","issue":"19","date_published":"2023-05-04T00:00:00Z","pmid":1,"ddc":["540"],"publisher":"American Chemical Society","day":"04","_id":"13092","title":"Bottom-up synthesis of SnTe-based thermoelectric composites","article_type":"original","volume":15,"publication":"ACS Applied Materials and Interfaces"},{"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)"},"oa":1,"date_published":"2023-05-04T00:00:00Z","issue":"10","year":"2023","abstract":[{"lang":"eng","text":"Endocytosis is a key cellular process involved in the uptake of nutrients, pathogens, or the therapy of diseases. Most studies have focused on spherical objects, whereas biologically relevant shapes can be highly anisotropic. In this letter, we use an experimental model system based on Giant Unilamellar Vesicles (GUVs) and dumbbell-shaped colloidal particles to mimic and investigate the first stage of the passive endocytic process: engulfment of an anisotropic object by the membrane. Our model has specific ligand–receptor interactions realized by mobile receptors on the vesicles and immobile ligands on the particles. Through a series of experiments, theory, and molecular dynamics simulations, we quantify the wrapping process of anisotropic dumbbells by GUVs and identify distinct stages of the wrapping pathway. We find that the strong curvature variation in the neck of the dumbbell as well as membrane tension are crucial in determining both the speed of wrapping and the final states."}],"intvolume":"        23","date_created":"2023-05-28T22:01:03Z","quality_controlled":"1","volume":23,"article_type":"letter_note","title":"Wrapping pathways of anisotropic dumbbell particles by Giant Unilamellar Vesicles","ec_funded":1,"publication":"Nano Letters","ddc":["540"],"pmid":1,"_id":"13094","day":"04","publisher":"American Chemical Society","article_processing_charge":"No","author":[{"first_name":"Ali","full_name":"Azadbakht, Ali","last_name":"Azadbakht"},{"last_name":"Meadowcroft","full_name":"Meadowcroft, Billie","first_name":"Billie","id":"a4725fd6-932b-11ed-81e2-c098c7f37ae1","orcid":"0000-0003-3441-1337"},{"first_name":"Thijs","full_name":"Varkevisser, Thijs","last_name":"Varkevisser"},{"id":"bf63d406-f056-11eb-b41d-f263a6566d8b","orcid":"0000-0002-7854-2139","first_name":"Anđela","last_name":"Šarić","full_name":"Šarić, Anđela"},{"first_name":"Daniela J.","last_name":"Kraft","full_name":"Kraft, Daniela J."}],"date_updated":"2025-04-14T07:59:30Z","department":[{"_id":"AnSa"}],"isi":1,"status":"public","doi":"10.1021/acs.nanolett.3c00375","publication_status":"published","oa_version":"Published Version","type":"journal_article","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","month":"05","external_id":{"isi":["000985481400001"],"pmid":["37141427"]},"file":[{"file_size":3654910,"checksum":"9734d4c617bab3578ef62916b764547a","relation":"main_file","date_updated":"2023-05-30T07:55:31Z","file_name":"2023_NanoLetters_Azadbakht.pdf","content_type":"application/pdf","creator":"dernst","date_created":"2023-05-30T07:55:31Z","success":1,"access_level":"open_access","file_id":"13100"}],"acknowledgement":"We sincerely thank Casper van der Wel for providing open-source packages for tracking, as well as Yogesh Shelke for his assistance with PAA coverslip preparation and Rachel Doherty for her assistance with particle functionalization. We are grateful to Felix Frey for useful discussions on the theory of membrane wrapping. B.M. and A.Š. acknowledge funding by the European Union’s Horizon 2020 research and innovation programme (ERC Starting Grant No. 802960).","page":"4267–4273","publication_identifier":{"eissn":["1530-6992"],"issn":["1530-6984"]},"has_accepted_license":"1","citation":{"mla":"Azadbakht, Ali, et al. “Wrapping Pathways of Anisotropic Dumbbell Particles by Giant Unilamellar Vesicles.” <i>Nano Letters</i>, vol. 23, no. 10, American Chemical Society, 2023, pp. 4267–4273, doi:<a href=\"https://doi.org/10.1021/acs.nanolett.3c00375\">10.1021/acs.nanolett.3c00375</a>.","ista":"Azadbakht A, Meadowcroft B, Varkevisser T, Šarić A, Kraft DJ. 2023. Wrapping pathways of anisotropic dumbbell particles by Giant Unilamellar Vesicles. Nano Letters. 23(10), 4267–4273.","ieee":"A. Azadbakht, B. Meadowcroft, T. Varkevisser, A. Šarić, and D. J. Kraft, “Wrapping pathways of anisotropic dumbbell particles by Giant Unilamellar Vesicles,” <i>Nano Letters</i>, vol. 23, no. 10. American Chemical Society, pp. 4267–4273, 2023.","short":"A. Azadbakht, B. Meadowcroft, T. Varkevisser, A. Šarić, D.J. Kraft, Nano Letters 23 (2023) 4267–4273.","ama":"Azadbakht A, Meadowcroft B, Varkevisser T, Šarić A, Kraft DJ. Wrapping pathways of anisotropic dumbbell particles by Giant Unilamellar Vesicles. <i>Nano Letters</i>. 2023;23(10):4267–4273. doi:<a href=\"https://doi.org/10.1021/acs.nanolett.3c00375\">10.1021/acs.nanolett.3c00375</a>","chicago":"Azadbakht, Ali, Billie Meadowcroft, Thijs Varkevisser, Anđela Šarić, and Daniela J. Kraft. “Wrapping Pathways of Anisotropic Dumbbell Particles by Giant Unilamellar Vesicles.” <i>Nano Letters</i>. American Chemical Society, 2023. <a href=\"https://doi.org/10.1021/acs.nanolett.3c00375\">https://doi.org/10.1021/acs.nanolett.3c00375</a>.","apa":"Azadbakht, A., Meadowcroft, B., Varkevisser, T., Šarić, A., &#38; Kraft, D. J. (2023). Wrapping pathways of anisotropic dumbbell particles by Giant Unilamellar Vesicles. <i>Nano Letters</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/acs.nanolett.3c00375\">https://doi.org/10.1021/acs.nanolett.3c00375</a>"},"language":[{"iso":"eng"}],"scopus_import":"1","file_date_updated":"2023-05-30T07:55:31Z","project":[{"_id":"eba2549b-77a9-11ec-83b8-a81e493eae4e","name":"Non-Equilibrium Protein Assembly: from Building Blocks to Biological Machines","call_identifier":"H2020","grant_number":"802960"}]},{"issue":"19","year":"2023","date_published":"2023-05-04T00:00:00Z","oa":1,"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)"},"quality_controlled":"1","date_created":"2023-05-28T22:01:04Z","intvolume":"       145","abstract":[{"text":"Disulfide bond formation is fundamentally important for protein structure and constitutes a key mechanism by which cells regulate the intracellular oxidation state. Peroxiredoxins (PRDXs) eliminate reactive oxygen species such as hydrogen peroxide through a catalytic cycle of Cys oxidation and reduction. Additionally, upon Cys oxidation PRDXs undergo extensive conformational rearrangements that may underlie their presently structurally poorly defined functions as molecular chaperones. Rearrangements include high molecular-weight oligomerization, the dynamics of which are, however, poorly understood, as is the impact of disulfide bond formation on these properties. Here we show that formation of disulfide bonds along the catalytic cycle induces extensive μs time scale dynamics, as monitored by magic-angle spinning NMR of the 216 kDa-large Tsa1 decameric assembly and solution-NMR of a designed dimeric mutant. We ascribe the conformational dynamics to structural frustration, resulting from conflicts between the disulfide-constrained reduction of mobility and the desire to fulfill other favorable contacts.","lang":"eng"}],"publication":"Journal of the American Chemical Society","title":"Disulfide-bond-induced structural frustration and dynamic disorder in a peroxiredoxin from MAS NMR","article_type":"original","volume":145,"day":"04","publisher":"American Chemical Society","_id":"13095","pmid":1,"ddc":["540"],"department":[{"_id":"PaSc"}],"date_updated":"2024-10-09T21:05:30Z","article_processing_charge":"No","author":[{"id":"3d9cac31-413c-11eb-9514-d1ec2a7fb7f3","orcid":"0000-0001-8297-8886","first_name":"Laura","full_name":"Troussicot, Laura","last_name":"Troussicot"},{"last_name":"Vallet","full_name":"Vallet, Alicia","first_name":"Alicia"},{"last_name":"Molin","full_name":"Molin, Mikael","first_name":"Mikael"},{"first_name":"Björn M.","full_name":"Burmann, Björn M.","last_name":"Burmann"},{"full_name":"Schanda, Paul","last_name":"Schanda","id":"7B541462-FAF6-11E9-A490-E8DFE5697425","orcid":"0000-0002-9350-7606","first_name":"Paul"}],"oa_version":"Published Version","type":"journal_article","doi":"10.1021/jacs.3c01200","publication_status":"published","status":"public","isi":1,"publication_identifier":{"issn":["0002-7863"],"eissn":["1520-5126"]},"external_id":{"isi":["000985907400001"],"pmid":["37140345"]},"page":"10700–10711","acknowledgement":"We thank Albert A. Smith (Univ. Leipzig) for discussions and help with detectors analyses, Undina Guillerm (IST Austria) for gel electrophoresis experiments (Figure S7), and Jens\r\nLidman (Univ. Gothenburg) for a 3Q relaxation analysis script. Intramural funding from Institute of Science and Technology Austria is acknowledged. This work also used the platforms of\r\nthe Grenoble Instruct-ERIC center (ISBG; UMS 3518 CNRSCEA-UJF-EMBL) within the Grenoble Partnership for Structural Biology (PSB), as well as the Swedish NMR Centre\r\nof the University of Gothenburg. Both platforms provided excellent research infrastructures. B.M.B. gratefully acknowledges funding from the Swedish Research Council (Starting grant 2016-04721), the Swedish Cancer Foundation (2019-0415), and the Knut och Alice Wallenberg Foundation through a Wallenberg Academy Fellowship (2016.0163) as well as through the Wallenberg Centre for Molecular and Translational Medicine, University of Gothenburg, Sweden. ","file":[{"checksum":"0758a930ef21c62fc91b14e657479f83","relation":"main_file","file_size":6719299,"date_updated":"2023-05-30T07:05:28Z","file_name":"2023_JACS_Troussicot.pdf","content_type":"application/pdf","creator":"dernst","file_id":"13098","date_created":"2023-05-30T07:05:28Z","success":1,"access_level":"open_access"}],"related_material":{"record":[{"id":"12820","status":"public","relation":"research_data"}]},"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","month":"05","file_date_updated":"2023-05-30T07:05:28Z","corr_author":"1","scopus_import":"1","language":[{"iso":"eng"}],"has_accepted_license":"1","citation":{"ama":"Troussicot L, Vallet A, Molin M, Burmann BM, Schanda P. Disulfide-bond-induced structural frustration and dynamic disorder in a peroxiredoxin from MAS NMR. <i>Journal of the American Chemical Society</i>. 2023;145(19):10700–10711. doi:<a href=\"https://doi.org/10.1021/jacs.3c01200\">10.1021/jacs.3c01200</a>","apa":"Troussicot, L., Vallet, A., Molin, M., Burmann, B. M., &#38; Schanda, P. (2023). Disulfide-bond-induced structural frustration and dynamic disorder in a peroxiredoxin from MAS NMR. <i>Journal of the American Chemical Society</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/jacs.3c01200\">https://doi.org/10.1021/jacs.3c01200</a>","chicago":"Troussicot, Laura, Alicia Vallet, Mikael Molin, Björn M. Burmann, and Paul Schanda. “Disulfide-Bond-Induced Structural Frustration and Dynamic Disorder in a Peroxiredoxin from MAS NMR.” <i>Journal of the American Chemical Society</i>. American Chemical Society, 2023. <a href=\"https://doi.org/10.1021/jacs.3c01200\">https://doi.org/10.1021/jacs.3c01200</a>.","ista":"Troussicot L, Vallet A, Molin M, Burmann BM, Schanda P. 2023. Disulfide-bond-induced structural frustration and dynamic disorder in a peroxiredoxin from MAS NMR. Journal of the American Chemical Society. 145(19), 10700–10711.","short":"L. Troussicot, A. Vallet, M. Molin, B.M. Burmann, P. Schanda, Journal of the American Chemical Society 145 (2023) 10700–10711.","ieee":"L. Troussicot, A. Vallet, M. Molin, B. M. Burmann, and P. Schanda, “Disulfide-bond-induced structural frustration and dynamic disorder in a peroxiredoxin from MAS NMR,” <i>Journal of the American Chemical Society</i>, vol. 145, no. 19. American Chemical Society, pp. 10700–10711, 2023.","mla":"Troussicot, Laura, et al. “Disulfide-Bond-Induced Structural Frustration and Dynamic Disorder in a Peroxiredoxin from MAS NMR.” <i>Journal of the American Chemical Society</i>, vol. 145, no. 19, American Chemical Society, 2023, pp. 10700–10711, doi:<a href=\"https://doi.org/10.1021/jacs.3c01200\">10.1021/jacs.3c01200</a>."}},{"pmid":1,"ddc":["570"],"publisher":"Springer Nature","day":"29","_id":"13096","title":"Structural basis of NINJ1-mediated plasma membrane rupture in cell death","article_type":"original","volume":618,"publication":"Nature","quality_controlled":"1","date_created":"2023-05-28T22:01:04Z","abstract":[{"lang":"eng","text":"Eukaryotic cells can undergo different forms of programmed cell death, many of which culminate in plasma membrane rupture as the defining terminal event1,2,3,4,5,6,7. Plasma membrane rupture was long thought to be driven by osmotic pressure, but it has recently been shown to be in many cases an active process, mediated by the protein ninjurin-18 (NINJ1). Here we resolve the structure of NINJ1 and the mechanism by which it ruptures membranes. Super-resolution microscopy reveals that NINJ1 clusters into structurally diverse assemblies in the membranes of dying cells, in particular large, filamentous assemblies with branched morphology. A cryo-electron microscopy structure of NINJ1 filaments shows a tightly packed fence-like array of transmembrane α-helices. Filament directionality and stability is defined by two amphipathic α-helices that interlink adjacent filament subunits. The NINJ1 filament features a hydrophilic side and a hydrophobic side, and molecular dynamics simulations show that it can stably cap membrane edges. The function of the resulting supramolecular arrangement was validated by site-directed mutagenesis. Our data thus suggest that, during lytic cell death, the extracellular α-helices of NINJ1 insert into the plasma membrane to polymerize NINJ1 monomers into amphipathic filaments that rupture the plasma membrane. The membrane protein NINJ1 is therefore an interactive component of the eukaryotic cell membrane that functions as an in-built breaking point in response to activation of cell death."}],"intvolume":"       618","oa":1,"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)"},"year":"2023","date_published":"2023-06-29T00:00:00Z","language":[{"iso":"eng"}],"citation":{"ista":"Degen M, Santos JC, Pluhackova K, Cebrero G, Ramos S, Jankevicius G, Hartenian E, Guillerm U, Mari SA, Kohl B, Müller DJ, Schanda P, Maier T, Perez C, Sieben C, Broz P, Hiller S. 2023. Structural basis of NINJ1-mediated plasma membrane rupture in cell death. Nature. 618, 1065–1071.","ieee":"M. Degen <i>et al.</i>, “Structural basis of NINJ1-mediated plasma membrane rupture in cell death,” <i>Nature</i>, vol. 618. Springer Nature, pp. 1065–1071, 2023.","short":"M. Degen, J.C. Santos, K. Pluhackova, G. Cebrero, S. Ramos, G. Jankevicius, E. Hartenian, U. Guillerm, S.A. Mari, B. Kohl, D.J. Müller, P. Schanda, T. Maier, C. Perez, C. Sieben, P. Broz, S. Hiller, Nature 618 (2023) 1065–1071.","mla":"Degen, Morris, et al. “Structural Basis of NINJ1-Mediated Plasma Membrane Rupture in Cell Death.” <i>Nature</i>, vol. 618, Springer Nature, 2023, pp. 1065–71, doi:<a href=\"https://doi.org/10.1038/s41586-023-05991-z\">10.1038/s41586-023-05991-z</a>.","ama":"Degen M, Santos JC, Pluhackova K, et al. Structural basis of NINJ1-mediated plasma membrane rupture in cell death. <i>Nature</i>. 2023;618:1065-1071. doi:<a href=\"https://doi.org/10.1038/s41586-023-05991-z\">10.1038/s41586-023-05991-z</a>","apa":"Degen, M., Santos, J. C., Pluhackova, K., Cebrero, G., Ramos, S., Jankevicius, G., … Hiller, S. (2023). Structural basis of NINJ1-mediated plasma membrane rupture in cell death. <i>Nature</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41586-023-05991-z\">https://doi.org/10.1038/s41586-023-05991-z</a>","chicago":"Degen, Morris, José Carlos Santos, Kristyna Pluhackova, Gonzalo Cebrero, Saray Ramos, Gytis Jankevicius, Ella Hartenian, et al. “Structural Basis of NINJ1-Mediated Plasma Membrane Rupture in Cell Death.” <i>Nature</i>. Springer Nature, 2023. <a href=\"https://doi.org/10.1038/s41586-023-05991-z\">https://doi.org/10.1038/s41586-023-05991-z</a>."},"has_accepted_license":"1","file_date_updated":"2023-11-14T11:48:18Z","scopus_import":"1","month":"06","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_identifier":{"issn":["0028-0836"],"eissn":["1476-4687"]},"page":"1065-1071","acknowledgement":"This work was supported by the Deutsche Forschungsgemeinschaft under Germany’s Excellence Strategy EXC 2075–390740016 and the Stuttgart Center for Simulation Science (SC SimTech) to K.P., by ERC-CoG 770988 (InflamCellDeath) and SNF Project funding (310030B_198005, 310030B_192523) to P.B., by the Swiss Nanoscience Institute and the Swiss National Science Foundation via the NCCR AntiResist (180541) to S.H. and the NCCR Molecular Systems Engineering (51NF40-205608) to D.J.M., by the Helmholtz Young Investigator Program of the Helmholtz Association to C.S., by the SNF Professorship funding (PP00P3_198903) to C.P., EMBO postdoctoral fellowship ALTF 27-2022 to E.H. and by the Scientific Service Units of IST Austria through resources provided by the NMR and Life Science Facilities to P.S. Molecular dynamics simulations were performed on the HoreKa supercomputer funded by the Ministry of Science, Research and the Arts Baden-Württemberg and by the Federal Ministry of Education and Research. The authors thank the BioEM Lab of the Biozentrum, University of Basel for support; V. Mack, K. Shkarina and J. Fricke for technical support; D. Ricklin and S. Vogt for peptide synthesis; P. Pelczar for support with animals; S.-J. Marrink and P. Telles de Souza for supply with Martini3 parameters and scripts; and P. Radler und M. Loose for help with QCM. Fig. 4g and Extended Data Fig. 1a were in part created with BioRender.com.\r\nOpen access funding provided by University of Basel.","file":[{"creator":"dernst","content_type":"application/pdf","success":1,"access_level":"open_access","date_created":"2023-11-14T11:48:18Z","file_id":"14533","file_size":12292188,"relation":"main_file","checksum":"0fab69252453bff1de7f0e2eceb76d34","date_updated":"2023-11-14T11:48:18Z","file_name":"2023_Nature_Degen.pdf"}],"acknowledged_ssus":[{"_id":"NMR"},{"_id":"LifeSc"}],"external_id":{"isi":["000991386800011"],"pmid":["37198476"]},"status":"public","isi":1,"type":"journal_article","oa_version":"Published Version","publication_status":"published","doi":"10.1038/s41586-023-05991-z","article_processing_charge":"Yes (via OA deal)","author":[{"full_name":"Degen, Morris","last_name":"Degen","first_name":"Morris"},{"full_name":"Santos, José Carlos","last_name":"Santos","first_name":"José Carlos"},{"full_name":"Pluhackova, Kristyna","last_name":"Pluhackova","first_name":"Kristyna"},{"first_name":"Gonzalo","last_name":"Cebrero","full_name":"Cebrero, Gonzalo"},{"first_name":"Saray","last_name":"Ramos","full_name":"Ramos, Saray"},{"full_name":"Jankevicius, Gytis","last_name":"Jankevicius","first_name":"Gytis"},{"full_name":"Hartenian, Ella","last_name":"Hartenian","first_name":"Ella"},{"full_name":"Guillerm, Undina","last_name":"Guillerm","id":"bb74f472-ae54-11eb-9835-bc9c22fb1183","first_name":"Undina"},{"full_name":"Mari, Stefania A.","last_name":"Mari","first_name":"Stefania A."},{"first_name":"Bastian","last_name":"Kohl","full_name":"Kohl, Bastian"},{"first_name":"Daniel J.","last_name":"Müller","full_name":"Müller, Daniel J."},{"first_name":"Paul","id":"7B541462-FAF6-11E9-A490-E8DFE5697425","orcid":"0000-0002-9350-7606","last_name":"Schanda","full_name":"Schanda, Paul"},{"first_name":"Timm","full_name":"Maier, Timm","last_name":"Maier"},{"full_name":"Perez, Camilo","last_name":"Perez","first_name":"Camilo"},{"first_name":"Christian","full_name":"Sieben, Christian","last_name":"Sieben"},{"first_name":"Petr","last_name":"Broz","full_name":"Broz, Petr"},{"last_name":"Hiller","full_name":"Hiller, Sebastian","first_name":"Sebastian"}],"department":[{"_id":"PaSc"}],"date_updated":"2025-04-23T08:57:12Z"},{"quality_controlled":"1","abstract":[{"lang":"eng","text":"Under high pressures and temperatures, molecular systems with substantial polarization charges, such as ammonia and water, are predicted to form superionic phases and dense fluid states with dissociating molecules and high electrical conductivity. This behaviour potentially plays a role in explaining the origin of the multipolar magnetic fields of Uranus and Neptune, whose mantles are thought to result from a mixture of H2O, NH3 and CH4 ices. Determining the stability domain, melting curve and electrical conductivity of these superionic phases is therefore crucial for modelling planetary interiors and dynamos. Here we report the melting curve of superionic ammonia up to 300 GPa from laser-driven shock compression of pre-compressed samples and atomistic calculations. We show that ammonia melts at lower temperatures than water above 100 GPa and that fluid ammonia’s electrical conductivity exceeds that of water at conditions predicted by hot, super-adiabatic models for Uranus and Neptune, and enhances the conductivity in their fluid water-rich dynamo layers."}],"date_created":"2023-06-04T22:01:02Z","intvolume":"        19","year":"2023","date_published":"2023-09-01T00:00:00Z","day":"01","publisher":"Springer Nature","_id":"13118","article_type":"original","title":"Melting curve of superionic ammonia at planetary interior conditions","volume":19,"publication":"Nature Physics","status":"public","isi":1,"oa_version":"None","type":"journal_article","doi":"10.1038/s41567-023-02074-8","publication_status":"published","author":[{"full_name":"Hernandez, J.-A.","last_name":"Hernandez","first_name":"J.-A."},{"last_name":"Bethkenhagen","full_name":"Bethkenhagen, Mandy","orcid":"0000-0002-1838-2129","id":"201939f4-803f-11ed-ab7e-d8da4bd1517f","first_name":"Mandy"},{"first_name":"S.","full_name":"Ninet, S.","last_name":"Ninet"},{"first_name":"M.","last_name":"French","full_name":"French, M."},{"first_name":"A.","full_name":"Benuzzi-Mounaix, A.","last_name":"Benuzzi-Mounaix"},{"full_name":"Datchi, F.","last_name":"Datchi","first_name":"F."},{"last_name":"Guarguaglini","full_name":"Guarguaglini, M.","first_name":"M."},{"last_name":"Lefevre","full_name":"Lefevre, F.","first_name":"F."},{"last_name":"Occelli","full_name":"Occelli, F.","first_name":"F."},{"last_name":"Redmer","full_name":"Redmer, R.","first_name":"R."},{"first_name":"T.","last_name":"Vinci","full_name":"Vinci, T."},{"first_name":"A.","last_name":"Ravasio","full_name":"Ravasio, A."}],"article_processing_charge":"No","department":[{"_id":"BiCh"}],"date_updated":"2024-08-20T05:59:32Z","language":[{"iso":"eng"}],"citation":{"chicago":"Hernandez, J.-A., Mandy Bethkenhagen, S. Ninet, M. French, A. Benuzzi-Mounaix, F. Datchi, M. Guarguaglini, et al. “Melting Curve of Superionic Ammonia at Planetary Interior Conditions.” <i>Nature Physics</i>. Springer Nature, 2023. <a href=\"https://doi.org/10.1038/s41567-023-02074-8\">https://doi.org/10.1038/s41567-023-02074-8</a>.","apa":"Hernandez, J.-A., Bethkenhagen, M., Ninet, S., French, M., Benuzzi-Mounaix, A., Datchi, F., … Ravasio, A. (2023). Melting curve of superionic ammonia at planetary interior conditions. <i>Nature Physics</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41567-023-02074-8\">https://doi.org/10.1038/s41567-023-02074-8</a>","ama":"Hernandez J-A, Bethkenhagen M, Ninet S, et al. Melting curve of superionic ammonia at planetary interior conditions. <i>Nature Physics</i>. 2023;19:1280-1285. doi:<a href=\"https://doi.org/10.1038/s41567-023-02074-8\">10.1038/s41567-023-02074-8</a>","mla":"Hernandez, J. A., et al. “Melting Curve of Superionic Ammonia at Planetary Interior Conditions.” <i>Nature Physics</i>, vol. 19, Springer Nature, 2023, pp. 1280–85, doi:<a href=\"https://doi.org/10.1038/s41567-023-02074-8\">10.1038/s41567-023-02074-8</a>.","ieee":"J.-A. Hernandez <i>et al.</i>, “Melting curve of superionic ammonia at planetary interior conditions,” <i>Nature Physics</i>, vol. 19. Springer Nature, pp. 1280–1285, 2023.","ista":"Hernandez J-A, Bethkenhagen M, Ninet S, French M, Benuzzi-Mounaix A, Datchi F, Guarguaglini M, Lefevre F, Occelli F, Redmer R, Vinci T, Ravasio A. 2023. Melting curve of superionic ammonia at planetary interior conditions. Nature Physics. 19, 1280–1285.","short":"J.-A. Hernandez, M. Bethkenhagen, S. Ninet, M. French, A. Benuzzi-Mounaix, F. Datchi, M. Guarguaglini, F. Lefevre, F. Occelli, R. Redmer, T. Vinci, A. Ravasio, Nature Physics 19 (2023) 1280–1285."},"scopus_import":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"09","publication_identifier":{"issn":["1745-2473"],"eissn":["1745-2481"]},"external_id":{"isi":["000996921200001"]},"page":"1280-1285","related_material":{"link":[{"relation":"erratum","url":"https://doi.org/10.1038/s41567-023-02130-3"}]},"acknowledgement":"We acknowledge the crucial contribution of the LULI2000 laser and support teams to the success of the experiments. We also thank S. Brygoo and P. Loubeyre for useful discussions. This research was supported by the French National Research Agency (ANR) through the projects POMPEI (grant no. ANR-16-CE31-0008) and SUPER-ICES (grant ANR-15-CE30-008-01), and by the PLAS@PAR Federation. M.F. and R.R. gratefully acknowledge support by the DFG within the Research Unit FOR 2440. M.B. was supported by the European Union within the Marie Skłodowska-Curie actions (xICE grant 894725) and the NOMIS foundation. The DFT-MD calculations were performed at the North-German Supercomputing Alliance facilities."},{"language":[{"iso":"eng"}],"has_accepted_license":"1","citation":{"apa":"Helson, V., Zwettler, T., Mivehvar, F., Colella, E., Roux, K. E. R., Konishi, H., … Brantut, J. P. (2023). Density-wave ordering in a unitary Fermi gas with photon-mediated interactions. <i>Nature</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41586-023-06018-3\">https://doi.org/10.1038/s41586-023-06018-3</a>","chicago":"Helson, Victor, Timo Zwettler, Farokh Mivehvar, Elvia Colella, Kevin Etienne Robert Roux, Hideki Konishi, Helmut Ritsch, and Jean Philippe Brantut. “Density-Wave Ordering in a Unitary Fermi Gas with Photon-Mediated Interactions.” <i>Nature</i>. Springer Nature, 2023. <a href=\"https://doi.org/10.1038/s41586-023-06018-3\">https://doi.org/10.1038/s41586-023-06018-3</a>.","ama":"Helson V, Zwettler T, Mivehvar F, et al. Density-wave ordering in a unitary Fermi gas with photon-mediated interactions. <i>Nature</i>. 2023;618:716-720. doi:<a href=\"https://doi.org/10.1038/s41586-023-06018-3\">10.1038/s41586-023-06018-3</a>","ista":"Helson V, Zwettler T, Mivehvar F, Colella E, Roux KER, Konishi H, Ritsch H, Brantut JP. 2023. Density-wave ordering in a unitary Fermi gas with photon-mediated interactions. Nature. 618, 716–720.","ieee":"V. Helson <i>et al.</i>, “Density-wave ordering in a unitary Fermi gas with photon-mediated interactions,” <i>Nature</i>, vol. 618. Springer Nature, pp. 716–720, 2023.","short":"V. Helson, T. Zwettler, F. Mivehvar, E. Colella, K.E.R. Roux, H. Konishi, H. Ritsch, J.P. Brantut, Nature 618 (2023) 716–720.","mla":"Helson, Victor, et al. “Density-Wave Ordering in a Unitary Fermi Gas with Photon-Mediated Interactions.” <i>Nature</i>, vol. 618, Springer Nature, 2023, pp. 716–20, doi:<a href=\"https://doi.org/10.1038/s41586-023-06018-3\">10.1038/s41586-023-06018-3</a>."},"file_date_updated":"2023-11-14T13:00:19Z","scopus_import":"1","month":"06","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_identifier":{"eissn":["1476-4687"],"issn":["0028-0836"]},"external_id":{"pmid":["37225993"],"isi":["001001139300008"]},"page":"716-720","file":[{"date_updated":"2023-11-14T13:00:19Z","file_name":"2023_Nature_Helson.pdf","file_size":8156497,"checksum":"4887a296e3b6f54e8c0b946cbfd24f49","relation":"main_file","date_created":"2023-11-14T13:00:19Z","success":1,"access_level":"open_access","file_id":"14534","content_type":"application/pdf","creator":"dernst"}],"acknowledgement":"Open access funding provided by EPFL Lausanne.We acknowledge discussions with T. Donner and T. Esslinger. We thank G. del Pace and T. Bühler for their assistance in the final stages of the experiment. We acknowledge funding from the European Research Council under the European Union Horizon 2020 Research and Innovation Programme (Grant no. 714309) and the Swiss National Science Foundation (Grant no. 184654). F.M. acknowledges financial support from the Austrian Science Fund (Stand-Alone Project P 35891-N).","status":"public","isi":1,"oa_version":"Published Version","type":"journal_article","doi":"10.1038/s41586-023-06018-3","publication_status":"published","author":[{"last_name":"Helson","full_name":"Helson, Victor","first_name":"Victor"},{"last_name":"Zwettler","full_name":"Zwettler, Timo","first_name":"Timo"},{"first_name":"Farokh","full_name":"Mivehvar, Farokh","last_name":"Mivehvar"},{"first_name":"Elvia","full_name":"Colella, Elvia","last_name":"Colella"},{"last_name":"Roux","full_name":"Roux, Kevin Etienne Robert","first_name":"Kevin Etienne Robert","id":"53f93ea2-803f-11ed-ab7e-b283135794ef"},{"first_name":"Hideki","last_name":"Konishi","full_name":"Konishi, Hideki"},{"first_name":"Helmut","last_name":"Ritsch","full_name":"Ritsch, Helmut"},{"first_name":"Jean Philippe","full_name":"Brantut, Jean Philippe","last_name":"Brantut"}],"article_processing_charge":"Yes (via OA deal)","department":[{"_id":"GeKa"}],"date_updated":"2025-04-23T08:58:21Z","pmid":1,"ddc":["530"],"day":"22","publisher":"Springer Nature","_id":"13119","title":"Density-wave ordering in a unitary Fermi gas with photon-mediated interactions","article_type":"original","volume":618,"publication":"Nature","quality_controlled":"1","date_created":"2023-06-04T22:01:03Z","intvolume":"       618","abstract":[{"text":"A density wave (DW) is a fundamental type of long-range order in quantum matter tied to self-organization into a crystalline structure. The interplay of DW order with superfluidity can lead to complex scenarios that pose a great challenge to theoretical analysis. In the past decades, tunable quantum Fermi gases have served as model systems for exploring the physics of strongly interacting fermions, including most notably magnetic ordering1, pairing and superfluidity2, and the crossover from a Bardeen–Cooper–Schrieffer superfluid to a Bose–Einstein condensate3. Here, we realize a Fermi gas featuring both strong, tunable contact interactions and photon-mediated, spatially structured long-range interactions in a transversely driven high-finesse optical cavity. Above a critical long-range interaction strength, DW order is stabilized in the system, which we identify via its superradiant light-scattering properties. We quantitatively measure the variation of the onset of DW order as the contact interaction is varied across the Bardeen–Cooper–Schrieffer superfluid and Bose–Einstein condensate crossover, in qualitative agreement with a mean-field theory. The atomic DW susceptibility varies over an order of magnitude upon tuning the strength and the sign of the long-range interactions below the self-ordering threshold, demonstrating independent and simultaneous control over the contact and long-range interactions. Therefore, our experimental setup provides a fully tunable and microscopically controllable platform for the experimental study of the interplay of superfluidity and DW order.","lang":"eng"}],"oa":1,"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)"},"year":"2023","date_published":"2023-06-22T00:00:00Z"},{"_id":"13127","publisher":"Springer Nature","day":"03","ddc":["570"],"pmid":1,"publication":"Nature Communications","volume":14,"ec_funded":1,"title":"Dynamic pathogen detection and social feedback shape collective hygiene in ants","article_type":"original","date_created":"2023-06-11T22:00:40Z","intvolume":"        14","abstract":[{"text":"Cooperative disease defense emerges as group-level collective behavior, yet how group members make the underlying individual decisions is poorly understood. Using garden ants and fungal pathogens as an experimental model, we derive the rules governing individual ant grooming choices and show how they produce colony-level hygiene. Time-resolved behavioral analysis, pathogen quantification, and probabilistic modeling reveal that ants increase grooming and preferentially target highly-infectious individuals when perceiving high pathogen load, but transiently suppress grooming after having been groomed by nestmates. Ants thus react to both, the infectivity of others and the social feedback they receive on their own contagiousness. While inferred solely from momentary ant decisions, these behavioral rules quantitatively predict hour-long experimental dynamics, and synergistically combine into efficient colony-wide pathogen removal. Our analyses show that noisy individual decisions based on only local, incomplete, yet dynamically-updated information on pathogen threat and social feedback can lead to potent collective disease defense.","lang":"eng"}],"quality_controlled":"1","date_published":"2023-06-03T00:00:00Z","year":"2023","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)"},"oa":1,"scopus_import":"1","corr_author":"1","file_date_updated":"2023-06-13T08:05:46Z","project":[{"name":"Epidemics in ant societies on a chip","_id":"2649B4DE-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","grant_number":"771402"},{"_id":"255008E4-B435-11E9-9278-68D0E5697425","name":"Information processing and computation in fish groups","grant_number":"RGP0065/2012"}],"citation":{"mla":"Casillas Perez, Barbara E., et al. “Dynamic Pathogen Detection and Social Feedback Shape Collective Hygiene in Ants.” <i>Nature Communications</i>, vol. 14, 3232, Springer Nature, 2023, doi:<a href=\"https://doi.org/10.1038/s41467-023-38947-y\">10.1038/s41467-023-38947-y</a>.","ieee":"B. E. Casillas Perez, K. Bodova, A. V. Grasse, G. Tkačik, and S. Cremer, “Dynamic pathogen detection and social feedback shape collective hygiene in ants,” <i>Nature Communications</i>, vol. 14. Springer Nature, 2023.","short":"B.E. Casillas Perez, K. Bodova, A.V. Grasse, G. Tkačik, S. Cremer, Nature Communications 14 (2023).","ista":"Casillas Perez BE, Bodova K, Grasse AV, Tkačik G, Cremer S. 2023. Dynamic pathogen detection and social feedback shape collective hygiene in ants. Nature Communications. 14, 3232.","ama":"Casillas Perez BE, Bodova K, Grasse AV, Tkačik G, Cremer S. Dynamic pathogen detection and social feedback shape collective hygiene in ants. <i>Nature Communications</i>. 2023;14. doi:<a href=\"https://doi.org/10.1038/s41467-023-38947-y\">10.1038/s41467-023-38947-y</a>","chicago":"Casillas Perez, Barbara E, Katarina Bodova, Anna V Grasse, Gašper Tkačik, and Sylvia Cremer. “Dynamic Pathogen Detection and Social Feedback Shape Collective Hygiene in Ants.” <i>Nature Communications</i>. Springer Nature, 2023. <a href=\"https://doi.org/10.1038/s41467-023-38947-y\">https://doi.org/10.1038/s41467-023-38947-y</a>.","apa":"Casillas Perez, B. E., Bodova, K., Grasse, A. V., Tkačik, G., &#38; Cremer, S. (2023). Dynamic pathogen detection and social feedback shape collective hygiene in ants. <i>Nature Communications</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41467-023-38947-y\">https://doi.org/10.1038/s41467-023-38947-y</a>"},"has_accepted_license":"1","article_number":"3232","language":[{"iso":"eng"}],"acknowledgement":"We thank Mike Bidochka for the fungal strains, the ISTA Social Immunity Team for ant collection, Hanna Leitner for experimental and molecular support, Jennifer Robb and Lukas Lindorfer for microscopy, and the LabSupport Facility at ISTA for general laboratory support. We further thank Victor Mireles, Iain Couzin, Fabian Theis and the Social Immunity Team for continued feedback throughout, and Michael Sixt, Yuko Ulrich, Koos Boomsma, Erika Dawson, Megan Kutzer and Hinrich Schulenburg for comments on the manuscript. This project has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation program (Grant No. 771402; EPIDEMICSonCHIP) to SC, from the Scientific Grant Agency of the Slovak Republic (Grant No. 1/0521/20) to KB, and the Human Frontier Science Program (Grant No. RGP0065/2012) to GT.","related_material":{"record":[{"status":"public","relation":"research_data","id":"12945"}]},"file":[{"file_id":"13132","access_level":"open_access","success":1,"date_created":"2023-06-13T08:05:46Z","creator":"dernst","content_type":"application/pdf","date_updated":"2023-06-13T08:05:46Z","file_name":"2023_NatureComm_CasillasPerez.pdf","relation":"main_file","checksum":"4af0393e3ed47b3fc46e68b81c3c1007","file_size":2358167}],"external_id":{"isi":["001002562700005"],"pmid":["37270641"]},"acknowledged_ssus":[{"_id":"LifeSc"}],"publication_identifier":{"eissn":["2041-1723"]},"month":"06","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","doi":"10.1038/s41467-023-38947-y","type":"journal_article","oa_version":"Published Version","isi":1,"status":"public","date_updated":"2025-04-14T07:47:53Z","department":[{"_id":"SyCr"},{"_id":"GaTk"}],"author":[{"last_name":"Casillas Perez","full_name":"Casillas Perez, Barbara E","first_name":"Barbara E","id":"351ED2AA-F248-11E8-B48F-1D18A9856A87"},{"id":"2BA24EA0-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-7214-0171","first_name":"Katarína","last_name":"Bod'Ová","full_name":"Bod'Ová, Katarína"},{"last_name":"Grasse","full_name":"Grasse, Anna V","id":"406F989C-F248-11E8-B48F-1D18A9856A87","first_name":"Anna V"},{"orcid":"0000-0002-6699-1455","id":"3D494DCA-F248-11E8-B48F-1D18A9856A87","first_name":"Gašper","full_name":"Tkačik, Gašper","last_name":"Tkačik"},{"full_name":"Cremer, Sylvia","last_name":"Cremer","orcid":"0000-0002-2193-3868","id":"2F64EC8C-F248-11E8-B48F-1D18A9856A87","first_name":"Sylvia"}],"article_processing_charge":"Yes"},{"article_type":"original","title":"Discrete analytical objects in the body-centered cubic grid","volume":142,"publication":"Pattern Recognition","publisher":"Elsevier","day":"01","_id":"13134","year":"2023","issue":"10","date_published":"2023-10-01T00:00:00Z","quality_controlled":"1","intvolume":"       142","abstract":[{"lang":"eng","text":"We propose a characterization of discrete analytical spheres, planes and lines in the body-centered cubic (BCC) grid, both in the Cartesian and in the recently proposed alternative compact coordinate system, in which each integer triplet addresses some voxel in the grid. We define spheres and planes through double Diophantine inequalities and investigate their relevant topological features, such as functionality or the interrelation between the thickness of the objects and their connectivity and separation properties. We define lines as the intersection of planes. The number of the planes (up to six) is equal to the number of the pairs of faces of a BCC voxel that are parallel to the line."}],"date_created":"2023-06-18T22:00:45Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"10","publication_identifier":{"issn":["0031-3203"]},"acknowledgement":"The first author has been partially supported by the Ministry of Science, Technological Development and Innovation of the Republic of Serbia through the project no. 451-03-47/2023-01/200156. The fourth author is funded by the DFG Collaborative Research Center TRR 109, ‘Discretization in Geometry and Dynamics’, Austrian Science Fund (FWF), grant no. I 02979-N35.","external_id":{"isi":["001013526000001"]},"language":[{"iso":"eng"}],"citation":{"mla":"Čomić, Lidija, et al. “Discrete Analytical Objects in the Body-Centered Cubic Grid.” <i>Pattern Recognition</i>, vol. 142, no. 10, 109693, Elsevier, 2023, doi:<a href=\"https://doi.org/10.1016/j.patcog.2023.109693\">10.1016/j.patcog.2023.109693</a>.","ista":"Čomić L, Largeteau-Skapin G, Zrour R, Biswas R, Andres E. 2023. Discrete analytical objects in the body-centered cubic grid. Pattern Recognition. 142(10), 109693.","short":"L. Čomić, G. Largeteau-Skapin, R. Zrour, R. Biswas, E. Andres, Pattern Recognition 142 (2023).","ieee":"L. Čomić, G. Largeteau-Skapin, R. Zrour, R. Biswas, and E. Andres, “Discrete analytical objects in the body-centered cubic grid,” <i>Pattern Recognition</i>, vol. 142, no. 10. Elsevier, 2023.","chicago":"Čomić, Lidija, Gaëlle Largeteau-Skapin, Rita Zrour, Ranita Biswas, and Eric Andres. “Discrete Analytical Objects in the Body-Centered Cubic Grid.” <i>Pattern Recognition</i>. Elsevier, 2023. <a href=\"https://doi.org/10.1016/j.patcog.2023.109693\">https://doi.org/10.1016/j.patcog.2023.109693</a>.","apa":"Čomić, L., Largeteau-Skapin, G., Zrour, R., Biswas, R., &#38; Andres, E. (2023). Discrete analytical objects in the body-centered cubic grid. <i>Pattern Recognition</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.patcog.2023.109693\">https://doi.org/10.1016/j.patcog.2023.109693</a>","ama":"Čomić L, Largeteau-Skapin G, Zrour R, Biswas R, Andres E. Discrete analytical objects in the body-centered cubic grid. <i>Pattern Recognition</i>. 2023;142(10). doi:<a href=\"https://doi.org/10.1016/j.patcog.2023.109693\">10.1016/j.patcog.2023.109693</a>"},"article_number":"109693","corr_author":"1","project":[{"grant_number":"I02979-N35","_id":"2561EBF4-B435-11E9-9278-68D0E5697425","name":"Persistence and stability of geometric complexes","call_identifier":"FWF"},{"_id":"0aa4bc98-070f-11eb-9043-e6fff9c6a316","name":"Persistent Homology, Algorithms and Stochastic Geometry","grant_number":"I4887"}],"scopus_import":"1","article_processing_charge":"No","author":[{"first_name":"Lidija","last_name":"Čomić","full_name":"Čomić, Lidija"},{"last_name":"Largeteau-Skapin","full_name":"Largeteau-Skapin, Gaëlle","first_name":"Gaëlle"},{"first_name":"Rita","last_name":"Zrour","full_name":"Zrour, Rita"},{"full_name":"Biswas, Ranita","last_name":"Biswas","orcid":"0000-0002-5372-7890","id":"3C2B033E-F248-11E8-B48F-1D18A9856A87","first_name":"Ranita"},{"last_name":"Andres","full_name":"Andres, Eric","first_name":"Eric"}],"department":[{"_id":"HeEd"}],"date_updated":"2025-04-15T07:45:32Z","status":"public","isi":1,"type":"journal_article","oa_version":"None","publication_status":"published","doi":"10.1016/j.patcog.2023.109693"},{"ec_funded":1,"title":"Reaction-diffusion equations with transport noise and critical superlinear diffusion: Local well-posedness and positivity","article_type":"original","volume":368,"publication":"Journal of Differential Equations","ddc":["510"],"publisher":"Elsevier","day":"25","_id":"13135","oa":1,"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)"},"year":"2023","issue":"9","date_published":"2023-09-25T00:00:00Z","quality_controlled":"1","abstract":[{"lang":"eng","text":"In this paper we consider a class of stochastic reaction-diffusion equations. We provide local well-posedness, regularity, blow-up criteria and positivity of solutions. The key novelties of this work are related to the use transport noise, critical spaces and the proof of higher order regularity of solutions – even in case of non-smooth initial data. Crucial tools are Lp(Lp)-theory, maximal regularity estimates and sharp blow-up criteria. We view the results of this paper as a general toolbox for establishing global well-posedness for a large class of reaction-diffusion systems of practical interest, of which many are completely open. In our follow-up work [8], the results of this paper are applied in the specific cases of the Lotka-Volterra equations and the Brusselator model."}],"date_created":"2023-06-18T22:00:45Z","intvolume":"       368","month":"09","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_identifier":{"issn":["0022-0396"],"eissn":["1090-2732"]},"acknowledgement":"The first author has received funding from the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation programme (grant agreement No. 948819) Image 1. The second author is supported by the VICI subsidy VI.C.212.027 of the Netherlands Organisation for Scientific Research (NWO).","file":[{"content_type":"application/pdf","creator":"dernst","file_id":"14895","date_created":"2024-01-29T11:03:09Z","access_level":"open_access","success":1,"checksum":"246b703b091dfe047bfc79abf0891a63","relation":"main_file","file_size":834638,"file_name":"2023_JourDifferentialEquations_Agresti.pdf","date_updated":"2024-01-29T11:03:09Z"}],"page":"247-300","external_id":{"isi":["001019018700001"]},"language":[{"iso":"eng"}],"citation":{"mla":"Agresti, Antonio, and Mark Veraar. “Reaction-Diffusion Equations with Transport Noise and Critical Superlinear Diffusion: Local Well-Posedness and Positivity.” <i>Journal of Differential Equations</i>, vol. 368, no. 9, Elsevier, 2023, pp. 247–300, doi:<a href=\"https://doi.org/10.1016/j.jde.2023.05.038\">10.1016/j.jde.2023.05.038</a>.","ista":"Agresti A, Veraar M. 2023. Reaction-diffusion equations with transport noise and critical superlinear diffusion: Local well-posedness and positivity. Journal of Differential Equations. 368(9), 247–300.","ieee":"A. Agresti and M. Veraar, “Reaction-diffusion equations with transport noise and critical superlinear diffusion: Local well-posedness and positivity,” <i>Journal of Differential Equations</i>, vol. 368, no. 9. Elsevier, pp. 247–300, 2023.","short":"A. Agresti, M. Veraar, Journal of Differential Equations 368 (2023) 247–300.","chicago":"Agresti, Antonio, and Mark Veraar. “Reaction-Diffusion Equations with Transport Noise and Critical Superlinear Diffusion: Local Well-Posedness and Positivity.” <i>Journal of Differential Equations</i>. Elsevier, 2023. <a href=\"https://doi.org/10.1016/j.jde.2023.05.038\">https://doi.org/10.1016/j.jde.2023.05.038</a>.","apa":"Agresti, A., &#38; Veraar, M. (2023). Reaction-diffusion equations with transport noise and critical superlinear diffusion: Local well-posedness and positivity. <i>Journal of Differential Equations</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.jde.2023.05.038\">https://doi.org/10.1016/j.jde.2023.05.038</a>","ama":"Agresti A, Veraar M. Reaction-diffusion equations with transport noise and critical superlinear diffusion: Local well-posedness and positivity. <i>Journal of Differential Equations</i>. 2023;368(9):247-300. doi:<a href=\"https://doi.org/10.1016/j.jde.2023.05.038\">10.1016/j.jde.2023.05.038</a>"},"has_accepted_license":"1","corr_author":"1","project":[{"name":"Bridging Scales in Random Materials","call_identifier":"H2020","_id":"0aa76401-070f-11eb-9043-b5bb049fa26d","grant_number":"948819"}],"file_date_updated":"2024-01-29T11:03:09Z","scopus_import":"1","author":[{"id":"673cd0cc-9b9a-11eb-b144-88f30e1fbb72","orcid":"0000-0002-9573-2962","first_name":"Antonio","full_name":"Agresti, Antonio","last_name":"Agresti"},{"full_name":"Veraar, Mark","last_name":"Veraar","first_name":"Mark"}],"article_processing_charge":"Yes (in subscription journal)","department":[{"_id":"JuFi"}],"date_updated":"2025-04-14T07:53:59Z","status":"public","isi":1,"type":"journal_article","oa_version":"Published Version","publication_status":"published","doi":"10.1016/j.jde.2023.05.038"},{"quality_controlled":"1","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2303.00729"}],"intvolume":"       107","abstract":[{"text":"We consider the spin-\r\n1\r\n2\r\n Heisenberg chain (XXX model) weakly perturbed away from integrability by an isotropic next-to-nearest neighbor exchange interaction. Recently, it was conjectured that this model possesses an infinite tower of quasiconserved integrals of motion (charges) [D. Kurlov et al., Phys. Rev. B 105, 104302 (2022)]. In this work we first test this conjecture by investigating how the norm of the adiabatic gauge potential (AGP) scales with the system size, which is known to be a remarkably accurate measure of chaos. We find that for the perturbed XXX chain the behavior of the AGP norm corresponds to neither an integrable nor a chaotic regime, which supports the conjectured quasi-integrability of the model. We then prove the conjecture and explicitly construct the infinite set of quasiconserved charges. Our proof relies on the fact that the XXX chain perturbed by next-to-nearest exchange interaction can be viewed as a truncation of an integrable long-range deformation of the Heisenberg spin chain.","lang":"eng"}],"date_created":"2023-06-18T22:00:46Z","oa":1,"issue":"18","year":"2023","date_published":"2023-05-01T00:00:00Z","day":"01","arxiv":1,"publisher":"American Physical Society","_id":"13138","title":"Adiabatic eigenstate deformations and weak integrability breaking of Heisenberg chain","article_type":"original","volume":107,"publication":"Physical Review B","status":"public","isi":1,"oa_version":"Preprint","type":"journal_article","doi":"10.1103/PhysRevB.107.184312","publication_status":"published","author":[{"first_name":"Pavel","last_name":"Orlov","full_name":"Orlov, Pavel"},{"first_name":"Anastasiia","last_name":"Tiutiakina","full_name":"Tiutiakina, Anastasiia"},{"last_name":"Sharipov","full_name":"Sharipov, Rustem","first_name":"Rustem"},{"full_name":"Petrova, Elena","last_name":"Petrova","first_name":"Elena","id":"0ac84990-897b-11ed-a09c-f5abb56a4ede"},{"last_name":"Gritsev","full_name":"Gritsev, Vladimir","first_name":"Vladimir"},{"last_name":"Kurlov","full_name":"Kurlov, Denis V.","first_name":"Denis V."}],"article_processing_charge":"No","department":[{"_id":"GradSch"}],"date_updated":"2023-08-02T06:16:02Z","language":[{"iso":"eng"}],"article_number":"184312","citation":{"ieee":"P. Orlov, A. Tiutiakina, R. Sharipov, E. Petrova, V. Gritsev, and D. V. Kurlov, “Adiabatic eigenstate deformations and weak integrability breaking of Heisenberg chain,” <i>Physical Review B</i>, vol. 107, no. 18. American Physical Society, 2023.","ista":"Orlov P, Tiutiakina A, Sharipov R, Petrova E, Gritsev V, Kurlov DV. 2023. Adiabatic eigenstate deformations and weak integrability breaking of Heisenberg chain. Physical Review B. 107(18), 184312.","short":"P. Orlov, A. Tiutiakina, R. Sharipov, E. Petrova, V. Gritsev, D.V. Kurlov, Physical Review B 107 (2023).","mla":"Orlov, Pavel, et al. “Adiabatic Eigenstate Deformations and Weak Integrability Breaking of Heisenberg Chain.” <i>Physical Review B</i>, vol. 107, no. 18, 184312, American Physical Society, 2023, doi:<a href=\"https://doi.org/10.1103/PhysRevB.107.184312\">10.1103/PhysRevB.107.184312</a>.","apa":"Orlov, P., Tiutiakina, A., Sharipov, R., Petrova, E., Gritsev, V., &#38; Kurlov, D. V. (2023). Adiabatic eigenstate deformations and weak integrability breaking of Heisenberg chain. <i>Physical Review B</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevB.107.184312\">https://doi.org/10.1103/PhysRevB.107.184312</a>","chicago":"Orlov, Pavel, Anastasiia Tiutiakina, Rustem Sharipov, Elena Petrova, Vladimir Gritsev, and Denis V. Kurlov. “Adiabatic Eigenstate Deformations and Weak Integrability Breaking of Heisenberg Chain.” <i>Physical Review B</i>. American Physical Society, 2023. <a href=\"https://doi.org/10.1103/PhysRevB.107.184312\">https://doi.org/10.1103/PhysRevB.107.184312</a>.","ama":"Orlov P, Tiutiakina A, Sharipov R, Petrova E, Gritsev V, Kurlov DV. Adiabatic eigenstate deformations and weak integrability breaking of Heisenberg chain. <i>Physical Review B</i>. 2023;107(18). doi:<a href=\"https://doi.org/10.1103/PhysRevB.107.184312\">10.1103/PhysRevB.107.184312</a>"},"scopus_import":"1","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","month":"05","publication_identifier":{"issn":["2469-9950"],"eissn":["2469-9969"]},"external_id":{"isi":["001003686900004"],"arxiv":["2303.00729"]},"acknowledgement":"The numerical computations in this work were performed using QuSpin [83, 84]. We acknowledge useful discussions with Igor Aleiner, Boris Altshuler, Jacopo de Nardis, Anatoli Polkovnikov, and Gora Shlyapnikov. We thank Piotr Sierant and Dario Rosa for drawing our attention to Refs. [31, 42, 46] and Ref. [47], respectively. We are grateful to an anonymous referee for very useful comments and for drawing our attention to Refs. [80, 81]. The work of VG is part of the DeltaITP consortium, a program of the Netherlands Organization for Scientific\r\nResearch (NWO) funded by the Dutch Ministry of Education, Culture and Science (OCW). VG is also partially supported by RSF 19-71-10092. The work of AT was supported by the ERC Starting Grant 101042293 (HEPIQ). RS acknowledges support from Slovenian Research Agency (ARRS) - research programme P1-0402. "}]