[{"file_date_updated":"2024-01-23T08:57:01Z","keyword":["General Medicine"],"day":"02","intvolume":"       135","oa":1,"type":"journal_article","article_processing_charge":"Yes (in subscription journal)","citation":{"ama":"Becker LM, Berbon M, Vallet A, et al. Der starre Kern und die flexible Oberfläche von Amyloidfibrillen – Magic‐Angle‐Spinning NMR Spektroskopie von aromatischen Resten. <i>Angewandte Chemie</i>. 2023;135(19). doi:<a href=\"https://doi.org/10.1002/ange.202219314\">10.1002/ange.202219314</a>","short":"L.M. Becker, M. Berbon, A. Vallet, A. Grelard, E. Morvan, B. Bardiaux, R. Lichtenecker, M. Ernst, A. Loquet, P. Schanda, Angewandte Chemie 135 (2023).","chicago":"Becker, Lea Marie, Mélanie Berbon, Alicia Vallet, Axelle Grelard, Estelle Morvan, Benjamin Bardiaux, Roman Lichtenecker, Matthias Ernst, Antoine Loquet, and Paul Schanda. “Der starre Kern und die flexible Oberfläche von Amyloidfibrillen – Magic‐Angle‐Spinning NMR Spektroskopie von aromatischen Resten.” <i>Angewandte Chemie</i>. Wiley, 2023. <a href=\"https://doi.org/10.1002/ange.202219314\">https://doi.org/10.1002/ange.202219314</a>.","apa":"Becker, L. M., Berbon, M., Vallet, A., Grelard, A., Morvan, E., Bardiaux, B., … Schanda, P. (2023). Der starre Kern und die flexible Oberfläche von Amyloidfibrillen – Magic‐Angle‐Spinning NMR Spektroskopie von aromatischen Resten. <i>Angewandte Chemie</i>. Wiley. <a href=\"https://doi.org/10.1002/ange.202219314\">https://doi.org/10.1002/ange.202219314</a>","ista":"Becker LM, Berbon M, Vallet A, Grelard A, Morvan E, Bardiaux B, Lichtenecker R, Ernst M, Loquet A, Schanda P. 2023. Der starre Kern und die flexible Oberfläche von Amyloidfibrillen – Magic‐Angle‐Spinning NMR Spektroskopie von aromatischen Resten. Angewandte Chemie. 135(19), e202219314.","mla":"Becker, Lea Marie, et al. “Der starre Kern und die flexible Oberfläche von Amyloidfibrillen – Magic‐Angle‐Spinning NMR Spektroskopie von aromatischen Resten.” <i>Angewandte Chemie</i>, vol. 135, no. 19, e202219314, Wiley, 2023, doi:<a href=\"https://doi.org/10.1002/ange.202219314\">10.1002/ange.202219314</a>.","ieee":"L. M. Becker <i>et al.</i>, “Der starre Kern und die flexible Oberfläche von Amyloidfibrillen – Magic‐Angle‐Spinning NMR Spektroskopie von aromatischen Resten,” <i>Angewandte Chemie</i>, vol. 135, no. 19. Wiley, 2023."},"acknowledgement":"Wir danken Albert A. Smith (Leipzig) für aufschlussreiche Diskussionen. Diese Arbeit wurde mit Mitteln des Europäischen Forschungsrats (StG-2012-311318 an P.S.) unterstützt und nutzte die Plattformen des Grenoble Instruct-ERIC Center (ISBG; UMS 3518 CNRS-CEA-UJF-EMBL) im Rahmen der Grenoble Partnership for Structural Biology (PSB) sowie die Einrichtungen und das Fachwissen der Biophysical and Structural Chemistry Platform (BPCS) am IECB, CNRS UAR3033, INSERM US001 und der Universität Bordeaux.","department":[{"_id":"PaSc"}],"issue":"19","article_number":"e202219314","author":[{"last_name":"Becker","full_name":"Becker, Lea Marie","id":"36336939-eb97-11eb-a6c2-c83f1214ca79","first_name":"Lea Marie","orcid":"0000-0002-6401-5151"},{"full_name":"Berbon, Mélanie","last_name":"Berbon","first_name":"Mélanie"},{"last_name":"Vallet","full_name":"Vallet, Alicia","first_name":"Alicia"},{"first_name":"Axelle","last_name":"Grelard","full_name":"Grelard, Axelle"},{"first_name":"Estelle","full_name":"Morvan, Estelle","last_name":"Morvan"},{"first_name":"Benjamin","last_name":"Bardiaux","full_name":"Bardiaux, Benjamin"},{"first_name":"Roman","full_name":"Lichtenecker, Roman","last_name":"Lichtenecker"},{"first_name":"Matthias","last_name":"Ernst","full_name":"Ernst, Matthias"},{"full_name":"Loquet, Antoine","last_name":"Loquet","first_name":"Antoine"},{"id":"7B541462-FAF6-11E9-A490-E8DFE5697425","orcid":"0000-0002-9350-7606","first_name":"Paul","last_name":"Schanda","full_name":"Schanda, Paul"}],"doi":"10.1002/ange.202219314","publication_status":"published","abstract":[{"lang":"ger","text":"Aromatische Seitenketten sind wichtige Indikatoren für die Plastizität von Proteinen und bilden oft entscheidende Kontakte bei Protein‐Protein‐Wechselwirkungen. Wir untersuchten aromatische Reste in den beiden strukturell homologen cross‐β Amyloidfibrillen HET‐s und HELLF mit Hilfe eines spezifischen Ansatzes zur Isotopenmarkierung und Festkörper NMR mit Drehung am magischen Winkel. Das dynamische Verhalten der aromatischen Reste Phe und Tyr deutet darauf hin, dass der hydrophobe Amyloidkern starr ist und keine Anzeichen von “atmenden Bewegungen” auf einer Zeitskala von Hunderten von Millisekunden zeigt. Aromatische Reste, die exponiert an der Fibrillenoberfläche sitzen, haben zwar eine starre Ringachse, weisen aber Ringflips auf verschiedenen Zeitskalen von Nanosekunden bis Mikrosekunden auf. Unser Ansatz bietet einen direkten Einblick in die Bewegungen des hydrophoben Kerns und ermöglicht eine bessere Bewertung der Konformationsheterogenität, die aus einem NMR‐Strukturensemble einer solchen Cross‐β‐Amyloidstruktur hervorgeht."}],"publication":"Angewandte Chemie","file":[{"date_created":"2024-01-23T08:57:01Z","file_size":1004676,"access_level":"open_access","content_type":"application/pdf","relation":"main_file","file_id":"14876","creator":"dernst","date_updated":"2024-01-23T08:57:01Z","file_name":"2023_AngewChem_Becker.pdf","success":1,"checksum":"98e68d370159f7be52a3d7c8a8ee1198"}],"publication_identifier":{"issn":["0044-8249"],"eissn":["1521-3757"]},"oa_version":"Published Version","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_type":"original","publisher":"Wiley","date_created":"2024-01-18T10:01:01Z","status":"public","corr_author":"1","title":"Der starre Kern und die flexible Oberfläche von Amyloidfibrillen – Magic‐Angle‐Spinning NMR Spektroskopie von aromatischen Resten","license":"https://creativecommons.org/licenses/by-nc/4.0/","volume":135,"date_published":"2023-05-02T00:00:00Z","_id":"14835","date_updated":"2024-10-09T21:07:55Z","language":[{"iso":"ger"}],"quality_controlled":"1","ddc":["540"],"year":"2023","has_accepted_license":"1","tmp":{"name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)","short":"CC BY-NC (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","image":"/images/cc_by_nc.png"},"month":"05"},{"_id":"14847","main_file_link":[{"url":"https://doi.org/10.26434/chemrxiv-2023-rpn28","open_access":"1"}],"date_published":"2023-11-01T00:00:00Z","alternative_title":["New Developments in NMR"],"quality_controlled":"1","language":[{"iso":"eng"}],"date_updated":"2024-10-09T21:07:57Z","editor":[{"first_name":"Sebastian","full_name":"Hiller, Sebastian","last_name":"Hiller"},{"first_name":"Maili","last_name":"Liu","full_name":"Liu, Maili"},{"first_name":"Lichun","full_name":"He, Lichun","last_name":"He"}],"year":"2023","month":"11","status":"public","corr_author":"1","page":"136-161","volume":29,"title":"Preparing Chaperone–Client Protein Complexes for Biophysical and Structural Studies","publication":"Biophysics of Molecular Chaperones","abstract":[{"lang":"eng","text":"Understanding the mechanisms of chaperones at the atomic level generally requires producing chaperone–client complexes in vitro. This task comes with significant challenges, because one needs to find conditions in which the client protein is presented to the chaperone in a state that binds and at the same time avoid the pitfalls of protein aggregation that are often inherent to such states. The strategy differs significantly for different client proteins and chaperones, but there are common underlying principles. Here, we discuss these principles and deduce the strategies that can be successfully applied for different chaperone–client complexes. We review successful biochemical strategies applied to making the client protein “binding competent” and illustrate the different strategies with examples of recent biophysical and biochemical studies."}],"publication_status":"published","doi":"10.1039/bk9781839165986-00136","oa_version":"Preprint","publication_identifier":{"isbn":["9781839162824"],"eisbn":["9781839165993"]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_created":"2024-01-22T08:04:57Z","publisher":"Royal Society of Chemistry","intvolume":"        29","day":"01","citation":{"ieee":"I. Sučec and P. Schanda, “Preparing Chaperone–Client Protein Complexes for Biophysical and Structural Studies,” in <i>Biophysics of Molecular Chaperones</i>, vol. 29, S. Hiller, M. Liu, and L. He, Eds. Royal Society of Chemistry, 2023, pp. 136–161.","mla":"Sučec, I., and Paul Schanda. “Preparing Chaperone–Client Protein Complexes for Biophysical and Structural Studies.” <i>Biophysics of Molecular Chaperones</i>, edited by Sebastian Hiller et al., vol. 29, Royal Society of Chemistry, 2023, pp. 136–61, doi:<a href=\"https://doi.org/10.1039/bk9781839165986-00136\">10.1039/bk9781839165986-00136</a>.","ista":"Sučec I, Schanda P. 2023.Preparing Chaperone–Client Protein Complexes for Biophysical and Structural Studies. In: Biophysics of Molecular Chaperones. New Developments in NMR, vol. 29, 136–161.","apa":"Sučec, I., &#38; Schanda, P. (2023). Preparing Chaperone–Client Protein Complexes for Biophysical and Structural Studies. In S. Hiller, M. Liu, &#38; L. He (Eds.), <i>Biophysics of Molecular Chaperones</i> (Vol. 29, pp. 136–161). Royal Society of Chemistry. <a href=\"https://doi.org/10.1039/bk9781839165986-00136\">https://doi.org/10.1039/bk9781839165986-00136</a>","chicago":"Sučec, I., and Paul Schanda. “Preparing Chaperone–Client Protein Complexes for Biophysical and Structural Studies.” In <i>Biophysics of Molecular Chaperones</i>, edited by Sebastian Hiller, Maili Liu, and Lichun He, 29:136–61. Royal Society of Chemistry, 2023. <a href=\"https://doi.org/10.1039/bk9781839165986-00136\">https://doi.org/10.1039/bk9781839165986-00136</a>.","short":"I. Sučec, P. Schanda, in:, S. Hiller, M. Liu, L. He (Eds.), Biophysics of Molecular Chaperones, Royal Society of Chemistry, 2023, pp. 136–161.","ama":"Sučec I, Schanda P. Preparing Chaperone–Client Protein Complexes for Biophysical and Structural Studies. In: Hiller S, Liu M, He L, eds. <i>Biophysics of Molecular Chaperones</i>. Vol 29. Royal Society of Chemistry; 2023:136-161. doi:<a href=\"https://doi.org/10.1039/bk9781839165986-00136\">10.1039/bk9781839165986-00136</a>"},"article_processing_charge":"No","type":"book_chapter","oa":1,"department":[{"_id":"PaSc"}],"author":[{"first_name":"I.","last_name":"Sučec","full_name":"Sučec, I."},{"full_name":"Schanda, Paul","last_name":"Schanda","first_name":"Paul","orcid":"0000-0002-9350-7606","id":"7B541462-FAF6-11E9-A490-E8DFE5697425"}]},{"day":"01","status":"public","intvolume":"        29","article_processing_charge":"No","type":"book_chapter","page":"278-318","citation":{"apa":"Wruck, F., Avellaneda Sarrió, M., Naqvi, M. M., Koers, E. J., Till, K., Gross, L., … Tans, S. J. (2023). Probing Single Chaperone Substrates. In S. Hiller, M. Liu, &#38; L. He (Eds.), <i>Biophysics of Molecular Chaperones</i> (Vol. 29, pp. 278–318). Royal Society of Chemistry. <a href=\"https://doi.org/10.1039/bk9781839165986-00278\">https://doi.org/10.1039/bk9781839165986-00278</a>","ista":"Wruck F, Avellaneda Sarrió M, Naqvi MM, Koers EJ, Till K, Gross L, Moayed F, Roland A, Heling LWHJ, Mashaghi A, Tans SJ. 2023.Probing Single Chaperone Substrates. In: Biophysics of Molecular Chaperones. New Developments in NMR, vol. 29, 278–318.","mla":"Wruck, F., et al. “Probing Single Chaperone Substrates.” <i>Biophysics of Molecular Chaperones</i>, edited by Sebastian Hiller et al., vol. 29, Royal Society of Chemistry, 2023, pp. 278–318, doi:<a href=\"https://doi.org/10.1039/bk9781839165986-00278\">10.1039/bk9781839165986-00278</a>.","ieee":"F. Wruck <i>et al.</i>, “Probing Single Chaperone Substrates,” in <i>Biophysics of Molecular Chaperones</i>, vol. 29, S. Hiller, M. Liu, and L. He, Eds. Royal Society of Chemistry, 2023, pp. 278–318.","short":"F. Wruck, M. Avellaneda Sarrió, M.M. Naqvi, E.J. Koers, K. Till, L. Gross, F. Moayed, A. Roland, L.W.H.J. Heling, A. Mashaghi, S.J. Tans, in:, S. Hiller, M. Liu, L. He (Eds.), Biophysics of Molecular Chaperones, Royal Society of Chemistry, 2023, pp. 278–318.","ama":"Wruck F, Avellaneda Sarrió M, Naqvi MM, et al. Probing Single Chaperone Substrates. In: Hiller S, Liu M, He L, eds. <i>Biophysics of Molecular Chaperones</i>. Vol 29. Royal Society of Chemistry; 2023:278-318. doi:<a href=\"https://doi.org/10.1039/bk9781839165986-00278\">10.1039/bk9781839165986-00278</a>","chicago":"Wruck, F., Mario Avellaneda Sarrió, M. M. Naqvi, E. J. Koers, K. Till, L. Gross, F. Moayed, et al. “Probing Single Chaperone Substrates.” In <i>Biophysics of Molecular Chaperones</i>, edited by Sebastian Hiller, Maili Liu, and Lichun He, 29:278–318. Royal Society of Chemistry, 2023. <a href=\"https://doi.org/10.1039/bk9781839165986-00278\">https://doi.org/10.1039/bk9781839165986-00278</a>."},"department":[{"_id":"MiSi"}],"title":"Probing Single Chaperone Substrates","volume":29,"author":[{"last_name":"Wruck","full_name":"Wruck, F.","first_name":"F."},{"full_name":"Avellaneda Sarrió, Mario","last_name":"Avellaneda Sarrió","id":"DC4BA84C-56E6-11EA-AD5D-348C3DDC885E","orcid":"0000-0001-6406-524X","first_name":"Mario"},{"last_name":"Naqvi","full_name":"Naqvi, M. M.","first_name":"M. M."},{"first_name":"E. J.","full_name":"Koers, E. J.","last_name":"Koers"},{"first_name":"K.","full_name":"Till, K.","last_name":"Till"},{"last_name":"Gross","full_name":"Gross, L.","first_name":"L."},{"first_name":"F.","full_name":"Moayed, F.","last_name":"Moayed"},{"last_name":"Roland","full_name":"Roland, A.","first_name":"A."},{"first_name":"L. W. H. J.","last_name":"Heling","full_name":"Heling, L. W. H. J."},{"last_name":"Mashaghi","full_name":"Mashaghi, A.","first_name":"A."},{"first_name":"S. J.","last_name":"Tans","full_name":"Tans, S. J."}],"doi":"10.1039/bk9781839165986-00278","alternative_title":["New Developments in NMR"],"abstract":[{"lang":"eng","text":"Regulating protein states is considered the core function of chaperones. However, despite their importance to all major cellular processes, the conformational changes that chaperones impart on polypeptide chains are difficult to study directly due to their heterogeneous, dynamic, and multi-step nature. Here, we review recent advances towards this aim using single-molecule manipulation methods, which are rapidly revealing new mechanisms of conformational control and helping to define a different perspective on the chaperone function."}],"_id":"14848","publication":"Biophysics of Molecular Chaperones","date_published":"2023-11-01T00:00:00Z","publication_status":"published","date_updated":"2024-01-23T12:01:53Z","language":[{"iso":"eng"}],"editor":[{"last_name":"Hiller","full_name":"Hiller, Sebastian","first_name":"Sebastian"},{"first_name":"Maili","last_name":"Liu","full_name":"Liu, Maili"},{"last_name":"He","full_name":"He, Lichun","first_name":"Lichun"}],"quality_controlled":"1","oa_version":"None","publication_identifier":{"eisbn":["9781839165993"],"isbn":["9781839162824"]},"year":"2023","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"Royal Society of Chemistry","month":"11","date_created":"2024-01-22T08:07:02Z"},{"date_updated":"2025-09-09T14:23:34Z","language":[{"iso":"eng"}],"quality_controlled":"1","date_published":"2023-11-01T00:00:00Z","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2206.04448"}],"_id":"14849","month":"11","year":"2023","page":"2192-2242","arxiv":1,"corr_author":"1","status":"public","title":"On the rightmost eigenvalue of non-Hermitian random matrices","volume":51,"publication_identifier":{"issn":["0091-1798"]},"oa_version":"Preprint","doi":"10.1214/23-aop1643","publication_status":"published","publication":"The Annals of Probability","abstract":[{"lang":"eng","text":"We establish a precise three-term asymptotic expansion, with an optimal estimate of the error term, for the rightmost eigenvalue of an n×n random matrix with independent identically distributed complex entries as n tends to infinity. All terms in the expansion are universal."}],"publisher":"Institute of Mathematical Statistics","article_type":"original","date_created":"2024-01-22T08:08:41Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","oa":1,"article_processing_charge":"No","type":"journal_article","citation":{"chicago":"Cipolloni, Giorgio, László Erdös, Dominik J Schröder, and Yuanyuan Xu. “On the Rightmost Eigenvalue of Non-Hermitian Random Matrices.” <i>The Annals of Probability</i>. Institute of Mathematical Statistics, 2023. <a href=\"https://doi.org/10.1214/23-aop1643\">https://doi.org/10.1214/23-aop1643</a>.","short":"G. Cipolloni, L. Erdös, D.J. Schröder, Y. Xu, The Annals of Probability 51 (2023) 2192–2242.","ama":"Cipolloni G, Erdös L, Schröder DJ, Xu Y. On the rightmost eigenvalue of non-Hermitian random matrices. <i>The Annals of Probability</i>. 2023;51(6):2192-2242. doi:<a href=\"https://doi.org/10.1214/23-aop1643\">10.1214/23-aop1643</a>","ieee":"G. Cipolloni, L. Erdös, D. J. Schröder, and Y. Xu, “On the rightmost eigenvalue of non-Hermitian random matrices,” <i>The Annals of Probability</i>, vol. 51, no. 6. Institute of Mathematical Statistics, pp. 2192–2242, 2023.","ista":"Cipolloni G, Erdös L, Schröder DJ, Xu Y. 2023. On the rightmost eigenvalue of non-Hermitian random matrices. The Annals of Probability. 51(6), 2192–2242.","apa":"Cipolloni, G., Erdös, L., Schröder, D. J., &#38; Xu, Y. (2023). On the rightmost eigenvalue of non-Hermitian random matrices. <i>The Annals of Probability</i>. Institute of Mathematical Statistics. <a href=\"https://doi.org/10.1214/23-aop1643\">https://doi.org/10.1214/23-aop1643</a>","mla":"Cipolloni, Giorgio, et al. “On the Rightmost Eigenvalue of Non-Hermitian Random Matrices.” <i>The Annals of Probability</i>, vol. 51, no. 6, Institute of Mathematical Statistics, 2023, pp. 2192–242, doi:<a href=\"https://doi.org/10.1214/23-aop1643\">10.1214/23-aop1643</a>."},"keyword":["Statistics","Probability and Uncertainty","Statistics and Probability"],"day":"01","intvolume":"        51","external_id":{"arxiv":["2206.04448"],"isi":["001112165000004"]},"isi":1,"scopus_import":"1","author":[{"full_name":"Cipolloni, Giorgio","last_name":"Cipolloni","first_name":"Giorgio","id":"42198EFA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4901-7992"},{"last_name":"Erdös","full_name":"Erdös, László","first_name":"László","orcid":"0000-0001-5366-9603","id":"4DBD5372-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Schröder","full_name":"Schröder, Dominik J","orcid":"0000-0002-2904-1856","first_name":"Dominik J","id":"408ED176-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Yuanyuan","full_name":"Xu, Yuanyuan","last_name":"Xu"}],"acknowledgement":"The second and the fourth author were supported by the ERC Advanced Grant\r\n“RMTBeyond” No. 101020331. The third author was supported by Dr. Max Rössler, the\r\nWalter Haefner Foundation and the ETH Zürich Foundation.","issue":"6","department":[{"_id":"LaEr"}],"project":[{"call_identifier":"H2020","_id":"62796744-2b32-11ec-9570-940b20777f1d","name":"Random matrices beyond Wigner-Dyson-Mehta","grant_number":"101020331"}],"ec_funded":1},{"day":"15","status":"public","article_processing_charge":"No","type":"book_chapter","corr_author":"1","citation":{"ieee":"J. O. Haerter and C. J. Muller, “Mechanisms for the Self‐Organization of Tropical Deep Convection,” in <i>Clouds and Their Climatic Impacts</i>, S. Sullivan and C. Hoose, Eds. Wiley, 2023, pp. 179–193.","ista":"Haerter JO, Muller CJ. 2023.Mechanisms for the Self‐Organization of Tropical Deep Convection. In: Clouds and Their Climatic Impacts. Geophysical Monograph Series, , 179–193.","apa":"Haerter, J. O., &#38; Muller, C. J. (2023). Mechanisms for the Self‐Organization of Tropical Deep Convection. In S. Sullivan &#38; C. Hoose (Eds.), <i>Clouds and Their Climatic Impacts</i> (pp. 179–193). Wiley. <a href=\"https://doi.org/10.1002/9781119700357.ch8\">https://doi.org/10.1002/9781119700357.ch8</a>","mla":"Haerter, Jan O., and Caroline J. Muller. “Mechanisms for the Self‐Organization of Tropical Deep Convection.” <i>Clouds and Their Climatic Impacts</i>, edited by Sylvia Sullivan and Corinna Hoose, Wiley, 2023, pp. 179–93, doi:<a href=\"https://doi.org/10.1002/9781119700357.ch8\">10.1002/9781119700357.ch8</a>.","chicago":"Haerter, Jan O., and Caroline J Muller. “Mechanisms for the Self‐Organization of Tropical Deep Convection.” In <i>Clouds and Their Climatic Impacts</i>, edited by Sylvia Sullivan and Corinna Hoose, 179–93. Wiley, 2023. <a href=\"https://doi.org/10.1002/9781119700357.ch8\">https://doi.org/10.1002/9781119700357.ch8</a>.","ama":"Haerter JO, Muller CJ. Mechanisms for the Self‐Organization of Tropical Deep Convection. In: Sullivan S, Hoose C, eds. <i>Clouds and Their Climatic Impacts</i>. Wiley; 2023:179-193. doi:<a href=\"https://doi.org/10.1002/9781119700357.ch8\">10.1002/9781119700357.ch8</a>","short":"J.O. Haerter, C.J. Muller, in:, S. Sullivan, C. Hoose (Eds.), Clouds and Their Climatic Impacts, Wiley, 2023, pp. 179–193."},"page":"179-193","department":[{"_id":"CaMu"}],"title":"Mechanisms for the Self‐Organization of Tropical Deep Convection","author":[{"last_name":"Haerter","full_name":"Haerter, Jan O.","first_name":"Jan O."},{"first_name":"Caroline J","id":"f978ccb0-3f7f-11eb-b193-b0e2bd13182b","orcid":"0000-0001-5836-5350","full_name":"Muller, Caroline J","last_name":"Muller"}],"alternative_title":["Geophysical Monograph Series"],"doi":"10.1002/9781119700357.ch8","_id":"14853","publication":"Clouds and Their Climatic Impacts","abstract":[{"text":"Organization – or departure from a random pattern – in tropical deep convection is heavily studied due to its immediate relevance to climate sensitivity and extremes. Low-latitude convection has motivated numerical model idealizations, where the Coriolis force is removed and boundary conditions are simplified spatially and temporally. One of the most stunning aspects of such idealized simulated cloud organization is the spontaneous clumping of convection that can occur without any predetermining external perturbation, such as inhomogeneous surface boundary conditions or large-scale waves. Whereas individual convective rain cells measure only few kilometers in horizontal diameter, the clusters they form can often span hundreds or even thousands of kilometers. Hence, organization may emerge from the very small scales but can show effects at the synoptic scale. We refer to such emergent organization as convective self-organization. Convective self-organization thus features characteristics of emergence, such as non-trivial system-scale pattern formation or hysteresis. We summarize observational evidence for large-scale organization and briefly recap classical idealized modeling studies that yield convective self-aggregation – emergent organization under strongly idealized boundary conditions. We then focus on developing research, where temporal variation, such as the diurnal cycle, or two-way interactive surface properties yield distinct organizational modes. Convectively generated cold pools and mesoscale convective systems, both ubiquitous in nature, are thereby found to potentially play key roles in promoting – rather than suppressing – sustained system-scale organization.","lang":"eng"}],"date_published":"2023-12-15T00:00:00Z","publication_status":"published","date_updated":"2024-10-09T21:07:59Z","language":[{"iso":"eng"}],"editor":[{"first_name":"Sylvia","full_name":"Sullivan, Sylvia","last_name":"Sullivan"},{"first_name":"Corinna","last_name":"Hoose","full_name":"Hoose, Corinna"}],"quality_controlled":"1","oa_version":"None","publication_identifier":{"eisbn":["9781119700357"],"isbn":["9781119700319"],"issn":["2328-8779"]},"year":"2023","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"Wiley","month":"12","date_created":"2024-01-22T08:23:16Z"},{"doi":"10.2140/paa.2023.5.973","publication_status":"published","abstract":[{"text":"We study the spectrum of the Fröhlich Hamiltonian for the polaron at fixed total momentum. We prove the existence of excited eigenvalues between the ground state energy and the essential spectrum at strong coupling. In fact, our main result shows that the number of excited energy bands diverges in the strong coupling limit. To prove this we derive upper bounds for the min-max values of the corresponding fiber Hamiltonians and compare them with the bottom of the essential spectrum, a lower bound on which was recently obtained by Brooks and Seiringer (Comm. Math. Phys. 404:1 (2023), 287–337). The upper bounds are given in terms of the ground state energy band shifted by momentum-independent excitation energies determined by an effective Hamiltonian of Bogoliubov type.","lang":"eng"}],"publication":"Pure and Applied Analysis","oa_version":"Preprint","publication_identifier":{"eissn":["2578-5885"],"issn":["2578-5893"]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_type":"original","publisher":"Mathematical Sciences Publishers","date_created":"2024-01-22T08:24:23Z","OA_place":"repository","keyword":["General Medicine"],"day":"15","intvolume":"         5","oa":1,"article_processing_charge":"No","type":"journal_article","citation":{"chicago":"Mitrouskas, David Johannes, and Robert Seiringer. “Ubiquity of Bound States for the Strongly Coupled Polaron.” <i>Pure and Applied Analysis</i>. Mathematical Sciences Publishers, 2023. <a href=\"https://doi.org/10.2140/paa.2023.5.973\">https://doi.org/10.2140/paa.2023.5.973</a>.","ama":"Mitrouskas DJ, Seiringer R. Ubiquity of bound states for the strongly coupled polaron. <i>Pure and Applied Analysis</i>. 2023;5(4):973-1008. doi:<a href=\"https://doi.org/10.2140/paa.2023.5.973\">10.2140/paa.2023.5.973</a>","short":"D.J. Mitrouskas, R. Seiringer, Pure and Applied Analysis 5 (2023) 973–1008.","ieee":"D. J. Mitrouskas and R. Seiringer, “Ubiquity of bound states for the strongly coupled polaron,” <i>Pure and Applied Analysis</i>, vol. 5, no. 4. Mathematical Sciences Publishers, pp. 973–1008, 2023.","mla":"Mitrouskas, David Johannes, and Robert Seiringer. “Ubiquity of Bound States for the Strongly Coupled Polaron.” <i>Pure and Applied Analysis</i>, vol. 5, no. 4, Mathematical Sciences Publishers, 2023, pp. 973–1008, doi:<a href=\"https://doi.org/10.2140/paa.2023.5.973\">10.2140/paa.2023.5.973</a>.","apa":"Mitrouskas, D. J., &#38; Seiringer, R. (2023). Ubiquity of bound states for the strongly coupled polaron. <i>Pure and Applied Analysis</i>. Mathematical Sciences Publishers. <a href=\"https://doi.org/10.2140/paa.2023.5.973\">https://doi.org/10.2140/paa.2023.5.973</a>","ista":"Mitrouskas DJ, Seiringer R. 2023. Ubiquity of bound states for the strongly coupled polaron. Pure and Applied Analysis. 5(4), 973–1008."},"department":[{"_id":"RoSe"}],"issue":"4","external_id":{"arxiv":["2211.03606"]},"scopus_import":"1","author":[{"last_name":"Mitrouskas","full_name":"Mitrouskas, David Johannes","first_name":"David Johannes","id":"cbddacee-2b11-11eb-a02e-a2e14d04e52d"},{"first_name":"Robert","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6781-0521","full_name":"Seiringer, Robert","last_name":"Seiringer"}],"OA_type":"green","date_published":"2023-12-15T00:00:00Z","_id":"14854","main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2211.03606","open_access":"1"}],"language":[{"iso":"eng"}],"date_updated":"2025-04-23T14:21:39Z","quality_controlled":"1","year":"2023","month":"12","status":"public","page":"973-1008","corr_author":"1","arxiv":1,"title":"Ubiquity of bound states for the strongly coupled polaron","volume":5},{"oa_version":"Published Version","publication_identifier":{"issn":["1433-7851"],"eissn":["1521-3773"]},"doi":"10.1002/anie.202304138","publication_status":"published","publication":"Angewandte Chemie International Edition","abstract":[{"text":"Cover Page","lang":"eng"}],"publisher":"Wiley","date_created":"2024-01-22T11:54:34Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa":1,"article_processing_charge":"No","type":"other_academic_publication","citation":{"chicago":"Becker, Lea Marie, Mélanie Berbon, Alicia Vallet, Axelle Grelard, Estelle Morvan, Benjamin Bardiaux, Roman Lichtenecker, Matthias Ernst, Antoine Loquet, and Paul Schanda. <i>Cover Picture: The Rigid Core and Flexible Surface of Amyloid Fibrils Probed by Magic‐Angle‐Spinning NMR Spectroscopy of Aromatic Residues</i>. <i>Angewandte Chemie International Edition</i>. Vol. 62. Wiley, 2023. <a href=\"https://doi.org/10.1002/anie.202304138\">https://doi.org/10.1002/anie.202304138</a>.","short":"L.M. Becker, M. Berbon, A. Vallet, A. Grelard, E. Morvan, B. Bardiaux, R. Lichtenecker, M. Ernst, A. Loquet, P. Schanda, Cover Picture: The Rigid Core and Flexible Surface of Amyloid Fibrils Probed by Magic‐Angle‐Spinning NMR Spectroscopy of Aromatic Residues, Wiley, 2023.","ama":"Becker LM, Berbon M, Vallet A, et al. <i>Cover Picture: The Rigid Core and Flexible Surface of Amyloid Fibrils Probed by Magic‐Angle‐Spinning NMR Spectroscopy of Aromatic Residues</i>. Vol 62. Wiley; 2023. doi:<a href=\"https://doi.org/10.1002/anie.202304138\">10.1002/anie.202304138</a>","ieee":"L. M. Becker <i>et al.</i>, <i>Cover Picture: The rigid core and flexible surface of amyloid fibrils probed by Magic‐Angle‐Spinning NMR spectroscopy of aromatic residues</i>, vol. 62, no. 19. Wiley, 2023.","apa":"Becker, L. M., Berbon, M., Vallet, A., Grelard, A., Morvan, E., Bardiaux, B., … Schanda, P. (2023). <i>Cover Picture: The rigid core and flexible surface of amyloid fibrils probed by Magic‐Angle‐Spinning NMR spectroscopy of aromatic residues</i>. <i>Angewandte Chemie International Edition</i> (Vol. 62). Wiley. <a href=\"https://doi.org/10.1002/anie.202304138\">https://doi.org/10.1002/anie.202304138</a>","ista":"Becker LM, Berbon M, Vallet A, Grelard A, Morvan E, Bardiaux B, Lichtenecker R, Ernst M, Loquet A, Schanda P. 2023. 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European Journal of Public Health. vol. 33, ckad160.597.","apa":"Rella, S., Kulikova, Y., Minnegalieva, A., &#38; Kondrashov, F. (2023). Complex vaccination strategies prevent the emergence of vaccine resistance. In <i>European Journal of Public Health</i> (Vol. 33). Oxford University Press. <a href=\"https://doi.org/10.1093/eurpub/ckad160.597\">https://doi.org/10.1093/eurpub/ckad160.597</a>","mla":"Rella, Simon, et al. “Complex Vaccination Strategies Prevent the Emergence of Vaccine Resistance.” <i>European Journal of Public Health</i>, vol. 33, no. 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Polesello, C. J. Muller, C. Pasquero, and A. N. Meroni, “Intensification mechanisms of tropical cyclones,” in <i>EGU General Assembly 2023</i>, Vienna, Austria &#38; Virtual, 2023.","apa":"Polesello, A., Muller, C. J., Pasquero, C., &#38; Meroni, A. N. (2023). Intensification mechanisms of tropical cyclones. In <i>EGU General Assembly 2023</i>. Vienna, Austria &#38; Virtual: European Geosciences Union. <a href=\"https://doi.org/10.5194/egusphere-egu23-6157\">https://doi.org/10.5194/egusphere-egu23-6157</a>","ista":"Polesello A, Muller CJ, Pasquero C, Meroni AN. 2023. Intensification mechanisms of tropical cyclones. EGU General Assembly 2023. 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Meroni, in:, EGU General Assembly 2023, European Geosciences Union, 2023."}},{"corr_author":"1","status":"public","title":"Measuring spontaneous charging of single aerosol particles","date_updated":"2025-04-14T07:54:10Z","language":[{"iso":"eng"}],"_id":"14864","date_published":"2023-04-23T00:00:00Z","month":"04","has_accepted_license":"1","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"year":"2023","ddc":["530"],"conference":{"name":"EGU General Assembly","start_date":"2023-04-23","end_date":"2023-04-28","location":"Vienna, Austria & Virtual"},"type":"conference_abstract","article_processing_charge":"No","oa":1,"citation":{"apa":"Stöllner, A., Lenton, I. C., Muller, C. J., &#38; Waitukaitis, S. R. (2023). Measuring spontaneous charging of single aerosol particles. In <i>EGU General Assembly 2023</i>. Vienna, Austria &#38; Virtual: European Geosciences Union. <a href=\"https://doi.org/10.5194/egusphere-egu23-6166\">https://doi.org/10.5194/egusphere-egu23-6166</a>","ista":"Stöllner A, Lenton IC, Muller CJ, Waitukaitis SR. 2023. Measuring spontaneous charging of single aerosol particles. EGU General Assembly 2023. EGU General Assembly, 6166.","mla":"Stöllner, Andrea, et al. “Measuring Spontaneous Charging of Single Aerosol Particles.” <i>EGU General Assembly 2023</i>, 6166, European Geosciences Union, 2023, doi:<a href=\"https://doi.org/10.5194/egusphere-egu23-6166\">10.5194/egusphere-egu23-6166</a>.","ieee":"A. Stöllner, I. C. Lenton, C. J. Muller, and S. R. Waitukaitis, “Measuring spontaneous charging of single aerosol particles,” in <i>EGU General Assembly 2023</i>, Vienna, Austria &#38; Virtual, 2023.","short":"A. Stöllner, I.C. Lenton, C.J. Muller, S.R. 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Sherwood, “Evaluating memory properties in convection schemes using idealised tests,” in <i>EGU General Assembly 2023</i>, Vienna, Austria &#38; Virtual, 2023."},"corr_author":"1","oa":1,"type":"conference_abstract","article_processing_charge":"No","status":"public","file_date_updated":"2024-02-05T08:48:41Z","day":"23","author":[{"last_name":"Hwong","full_name":"Hwong, Yi-Ling","orcid":"0000-0001-9281-3479","first_name":"Yi-Ling","id":"1217aa61-4dd1-11ec-9ac3-f2ba3f17ee22"},{"last_name":"Colin","full_name":"Colin, Maxime","first_name":"Maxime"},{"last_name":"Aglas","full_name":"Aglas, Philipp","first_name":"Philipp","id":"02eace56-97fc-11ee-b81a-f0939ca85a77"},{"first_name":"Caroline J","id":"f978ccb0-3f7f-11eb-b193-b0e2bd13182b","orcid":"0000-0001-5836-5350","full_name":"Muller, Caroline J","last_name":"Muller"},{"first_name":"Steven","full_name":"Sherwood, Steven","last_name":"Sherwood"}],"title":"Evaluating memory properties in convection schemes using idealised tests","article_number":"EGU23-4968","department":[{"_id":"CaMu"}],"oa_version":"Published Version","language":[{"iso":"eng"}],"date_updated":"2024-10-09T21:08:04Z","publication_status":"published","date_published":"2023-04-23T00:00:00Z","publication":"EGU General Assembly 2023","_id":"14865","file":[{"date_updated":"2024-02-05T08:48:41Z","creator":"dernst","file_id":"14936","checksum":"628a27caff437855ab320be46b9e8dcc","file_name":"2023_EGU_Hwong.pdf","success":1,"content_type":"application/pdf","relation":"main_file","access_level":"open_access","file_size":317541,"date_created":"2024-02-05T08:48:41Z"}],"doi":"10.5194/egusphere-egu23-4968","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"date_created":"2024-01-22T12:10:32Z","has_accepted_license":"1","month":"04","publisher":"European Geosciences Union","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","conference":{"name":"EGU General Assembly","start_date":"2023-04-23","end_date":"2023-04-28","location":"Vienna, Austria & Virtual"},"ddc":["550"],"year":"2023"},{"status":"public","file_date_updated":"2024-02-05T08:10:43Z","day":"23","citation":{"short":"S. Abramian, C.J. Muller, C. Risi, in:, EGU General Assembly 2023, European Geosciences Union, 2023.","ama":"Abramian S, Muller CJ, Risi C. Extreme precipitation in tropical squall lines. In: <i>EGU General Assembly 2023</i>. European Geosciences Union; 2023. doi:<a href=\"https://doi.org/10.5194/egusphere-egu23-15870\">10.5194/egusphere-egu23-15870</a>","chicago":"Abramian, Sophie, Caroline J Muller, and Camille Risi. “Extreme Precipitation in Tropical Squall Lines.” In <i>EGU General Assembly 2023</i>. European Geosciences Union, 2023. <a href=\"https://doi.org/10.5194/egusphere-egu23-15870\">https://doi.org/10.5194/egusphere-egu23-15870</a>.","mla":"Abramian, Sophie, et al. “Extreme Precipitation in Tropical Squall Lines.” <i>EGU General Assembly 2023</i>, EGU23-15870, European Geosciences Union, 2023, doi:<a href=\"https://doi.org/10.5194/egusphere-egu23-15870\">10.5194/egusphere-egu23-15870</a>.","ista":"Abramian S, Muller CJ, Risi C. 2023. Extreme precipitation in tropical squall lines. EGU General Assembly 2023. EGU General Assembly, EGU23-15870.","apa":"Abramian, S., Muller, C. J., &#38; Risi, C. (2023). Extreme precipitation in tropical squall lines. In <i>EGU General Assembly 2023</i>. Vienna, Austria &#38; Virtual: European Geosciences Union. <a href=\"https://doi.org/10.5194/egusphere-egu23-15870\">https://doi.org/10.5194/egusphere-egu23-15870</a>","ieee":"S. Abramian, C. J. Muller, and C. Risi, “Extreme precipitation in tropical squall lines,” in <i>EGU General Assembly 2023</i>, Vienna, Austria &#38; Virtual, 2023."},"corr_author":"1","oa":1,"article_processing_charge":"No","type":"conference_abstract","department":[{"_id":"CaMu"}],"author":[{"first_name":"Sophie","full_name":"Abramian, Sophie","last_name":"Abramian"},{"last_name":"Muller","full_name":"Muller, Caroline J","first_name":"Caroline J","orcid":"0000-0001-5836-5350","id":"f978ccb0-3f7f-11eb-b193-b0e2bd13182b"},{"first_name":"Camille","last_name":"Risi","full_name":"Risi, Camille"}],"title":"Extreme precipitation in tropical squall lines","article_number":"EGU23-15870","date_published":"2023-04-23T00:00:00Z","publication_status":"published","_id":"14866","file":[{"access_level":"open_access","relation":"main_file","content_type":"application/pdf","date_created":"2024-02-05T08:10:43Z","file_size":294690,"date_updated":"2024-02-05T08:10:43Z","file_id":"14935","creator":"dernst","success":1,"file_name":"2023_EGU_Abramian.pdf","checksum":"8cd5bb8bf3d48ceefb395b6875819147"}],"publication":"EGU General Assembly 2023","doi":"10.5194/egusphere-egu23-15870","oa_version":"Published Version","language":[{"iso":"eng"}],"date_updated":"2024-10-09T21:08:04Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","conference":{"name":"EGU General Assembly","start_date":"2023-04-23","end_date":"2023-04-28","location":"Vienna, Austria & Virtual"},"ddc":["550"],"year":"2023","date_created":"2024-01-22T12:10:52Z","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"has_accepted_license":"1","month":"04","publisher":"European Geosciences Union"},{"status":"public","corr_author":"1","arxiv":1,"page":"36-41","title":"Constructing Hamilton cycles and perfect matchings efficiently","_id":"14867","date_published":"2023-09-01T00:00:00Z","quality_controlled":"1","language":[{"iso":"eng"}],"date_updated":"2025-09-09T14:24:21Z","year":"2023","ddc":["510"],"conference":{"start_date":"2023-08-28","name":"EUROCOMB: European Conference on Combinatorics, Graph Theory and Applications","end_date":"2023-09-01","location":"Prague, Czech Republic"},"month":"09","has_accepted_license":"1","tmp":{"name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","short":"CC BY-NC-ND (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","image":"/images/cc_by_nc_nd.png"},"day":"01","file_date_updated":"2024-01-24T09:34:43Z","citation":{"mla":"Anastos, Michael. “Constructing Hamilton Cycles and Perfect Matchings Efficiently.” <i>Proceedings of the 12th European Conference on Combinatorics, Graph Theory and Applications</i>, Masaryk University Press, 2023, pp. 36–41, doi:<a href=\"https://doi.org/10.5817/cz.muni.eurocomb23-005\">10.5817/cz.muni.eurocomb23-005</a>.","apa":"Anastos, M. (2023). Constructing Hamilton cycles and perfect matchings efficiently. In <i>Proceedings of the 12th European Conference on Combinatorics, Graph Theory and Applications</i> (pp. 36–41). Prague, Czech Republic: Masaryk University Press. <a href=\"https://doi.org/10.5817/cz.muni.eurocomb23-005\">https://doi.org/10.5817/cz.muni.eurocomb23-005</a>","ista":"Anastos M. 2023. Constructing Hamilton cycles and perfect matchings efficiently. Proceedings of the 12th European Conference on Combinatorics, Graph Theory and Applications. EUROCOMB: European Conference on Combinatorics, Graph Theory and Applications, 36–41.","ieee":"M. Anastos, “Constructing Hamilton cycles and perfect matchings efficiently,” in <i>Proceedings of the 12th European Conference on Combinatorics, Graph Theory and Applications</i>, Prague, Czech Republic, 2023, pp. 36–41.","ama":"Anastos M. Constructing Hamilton cycles and perfect matchings efficiently. In: <i>Proceedings of the 12th European Conference on Combinatorics, Graph Theory and Applications</i>. Masaryk University Press; 2023:36-41. doi:<a href=\"https://doi.org/10.5817/cz.muni.eurocomb23-005\">10.5817/cz.muni.eurocomb23-005</a>","short":"M. Anastos, in:, Proceedings of the 12th European Conference on Combinatorics, Graph Theory and Applications, Masaryk University Press, 2023, pp. 36–41.","chicago":"Anastos, Michael. “Constructing Hamilton Cycles and Perfect Matchings Efficiently.” In <i>Proceedings of the 12th European Conference on Combinatorics, Graph Theory and Applications</i>, 36–41. Masaryk University Press, 2023. <a href=\"https://doi.org/10.5817/cz.muni.eurocomb23-005\">https://doi.org/10.5817/cz.muni.eurocomb23-005</a>."},"article_processing_charge":"No","type":"conference","oa":1,"ec_funded":1,"project":[{"grant_number":"101034413","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c","name":"IST-BRIDGE: International postdoctoral program","call_identifier":"H2020"}],"department":[{"_id":"MaKw"}],"acknowledgement":"This project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No 101034413.\r\n","author":[{"full_name":"Anastos, Michael","last_name":"Anastos","first_name":"Michael","id":"0b2a4358-bb35-11ec-b7b9-e3279b593dbb"}],"isi":1,"external_id":{"isi":["001448447300005"],"arxiv":["2209.09860"]},"publication":"Proceedings of the 12th European Conference on Combinatorics, Graph Theory and Applications","abstract":[{"text":"<jats:p>Starting with the empty graph on $[n]$, at each round, a set of $K=K(n)$ edges is presented chosen uniformly at random from the ones that have not been presented yet. We are then asked to choose at most one of the presented edges and add it to the current graph. Our goal is to construct a Hamiltonian graph with $(1+o(1))n$ edges within as few rounds as possible. We show that in this process, one can build a Hamiltonian graph of size $(1+o(1))n$ in $(1+o(1))(1+(\\log n)/2K) n$ rounds w.h.p. The case $K=1$ implies that w.h.p. one can build a Hamiltonian graph by choosing $(1+o(1))n$ edges in an online fashion as they appear along the first $(0.5+o(1))n\\log n$ rounds of the random graph process. This answers a question of Frieze, Krivelevich and Michaeli. Observe that the number of rounds is asymptotically optimal as the first $0.5n\\log n$ edges do not span a Hamilton cycle w.h.p. The case $K=\\Theta(\\log n)$ implies that the Hamiltonicity threshold of the corresponding Achlioptas process is at most $(1+o(1))(1+(\\log n)/2K) n$. This matches the $(1-o(1))(1+(\\log n)/2K) n$ lower bound due to Krivelevich, Lubetzky and Sudakov and resolves the problem of determining the Hamiltonicity threshold of the Achlioptas process with $K=\\Theta(\\log n)$. We also show that in the above process one can construct a graph $G$ that spans a matching of size $\\lfloor V(G)/2) \\rfloor$ and $(0.5+o(1))n$ edges within $(1+o(1))(0.5+(\\log n)/2K) n$ rounds w.h.p. Our proof relies on a robust Hamiltonicity property of the strong $4$-core of the binomial random graph which we use as a black-box. This property allows it to absorb paths covering vertices outside the strong $4$-core into a cycle.</jats:p>","lang":"eng"}],"file":[{"date_updated":"2024-01-24T09:34:43Z","creator":"dernst","file_id":"14881","checksum":"fb1d9a1e7389d90ec0e5e76934373cf8","success":1,"file_name":"2023_Eurocomb_Anastos.pdf","content_type":"application/pdf","relation":"main_file","access_level":"open_access","file_size":464230,"date_created":"2024-01-24T09:34:43Z"}],"publication_status":"published","doi":"10.5817/cz.muni.eurocomb23-005","oa_version":"Published Version","publication_identifier":{"eissn":["2788-3116"]},"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","date_created":"2024-01-22T12:20:15Z","publisher":"Masaryk University Press"},{"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2023","month":"06","date_created":"2024-01-22T12:21:56Z","publisher":"eLife Sciences Publications","article_type":"original","abstract":[{"lang":"eng","text":"The role of nuclear pore complexes (NPCs) in genome organization remains poorly characterized due to technical limitations in probing genome-wide protein-DNA interactions specific to the nuclear periphery. Here, we developed a new sensitive method, NPC-DamID, which combines in vitro reconstitution of nuclear import and DamID technology. The fixation-free method identifies chromatin interactions at the NPCs in intact nuclei from cells and tissues. We found that NPCs are preferentially associated with common and hierarchically arranged super-enhancers (SEs) across multiple cell types. We also uncovered phase-separated condensates at NPCs that compartmentalize and concentrate transcriptional coactivators and structural proteins at SE-regulated genes. Our results support NPCs as anchoring sites for SE regulatory hubs and cell-type-specific transcriptional control."}],"_id":"14868","publication":"eLife","main_file_link":[{"url":"https://doi.org/10.7554/eLife.87462.1","open_access":"1"}],"publication_status":"epub_ahead","date_published":"2023-06-23T00:00:00Z","doi":"10.7554/elife.87462","oa_version":"Submitted Version","language":[{"iso":"eng"}],"date_updated":"2024-07-31T11:56:25Z","department":[{"_id":"MaHe"}],"acknowledgement":"This work was supported by M.H.’s NIH R01 grants (NS096786, GM126829) and Salk Cancer Center Support Grant P30 CA014195. M.H. also received financial support from the W.M. Keck Foundation and the NOMIS Foundation. Further, M.H. received support from the AHA-Allen Initiative in Brain Health and Cognitive Impairment award made jointly through the American Heart Association and The Paul G. Allen Frontiers Group (19PABH134610000).\r\n\r\nS.T. and J.C. were supported by Salk’s Women & Science Awards. S.T. also received financial support from the Hewitt Foundation fellowship, and J.C. is a Paul F. Glenn Biology of Aging fellow. J.H. was supported by the National Natural Science Foundation of China (31871317 and 32070635).\r\n\r\nWe thank Roberta Schulte for assistance with in vitro transport assays, for comments that greatly improved the manuscript, and for helping refine the figures presented in this work. We thank Shefali Krishna for creating the diagram for the NPC-DamID method, for her input on super-resolution microscopy analysis, and her insightful comments on this manuscript. We thank all members of the Hetzer lab for helpful discussions of these research ideas and their thoughtful comments on this manuscript. We are also grateful to Salk’s core facilities for their assistance. Specifically, we thank the Next Generation Sequencing Core (NGS) for sequencing our DamID and RNA NGS libraries, the Advanced Biophotonics Core for assistance with super-resolution microscopy, and the Razavi Newman Integrative Genomics and Bioinformatics Core (IGC) for their input on analysis methods for DamID experiments.","author":[{"first_name":"Swati","last_name":"Tyagi","full_name":"Tyagi, Swati"},{"first_name":"Juliana S.","last_name":"Capitanio","full_name":"Capitanio, Juliana S."},{"full_name":"Xu, Jiawei","last_name":"Xu","first_name":"Jiawei"},{"last_name":"Chen","full_name":"Chen, Fei","first_name":"Fei"},{"first_name":"Rahul","full_name":"Sharma, Rahul","last_name":"Sharma"},{"first_name":"Jialiang","full_name":"Huang, Jialiang","last_name":"Huang"},{"last_name":"HETZER","full_name":"HETZER, Martin W","id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","orcid":"0000-0002-2111-992X","first_name":"Martin W"}],"title":"High-precision mapping of nuclear pore-chromatin interactions reveals new principles of genome organization at the nuclear envelope","status":"public","day":"23","corr_author":"1","citation":{"ista":"Tyagi S, Capitanio JS, Xu J, Chen F, Sharma R, Huang J, Hetzer M. 2023. High-precision mapping of nuclear pore-chromatin interactions reveals new principles of genome organization at the nuclear envelope. eLife.","apa":"Tyagi, S., Capitanio, J. S., Xu, J., Chen, F., Sharma, R., Huang, J., &#38; Hetzer, M. (2023). High-precision mapping of nuclear pore-chromatin interactions reveals new principles of genome organization at the nuclear envelope. <i>ELife</i>. eLife Sciences Publications. <a href=\"https://doi.org/10.7554/elife.87462\">https://doi.org/10.7554/elife.87462</a>","mla":"Tyagi, Swati, et al. “High-Precision Mapping of Nuclear Pore-Chromatin Interactions Reveals New Principles of Genome Organization at the Nuclear Envelope.” <i>ELife</i>, eLife Sciences Publications, 2023, doi:<a href=\"https://doi.org/10.7554/elife.87462\">10.7554/elife.87462</a>.","ieee":"S. Tyagi <i>et al.</i>, “High-precision mapping of nuclear pore-chromatin interactions reveals new principles of genome organization at the nuclear envelope,” <i>eLife</i>. eLife Sciences Publications, 2023.","short":"S. Tyagi, J.S. Capitanio, J. Xu, F. Chen, R. Sharma, J. Huang, M. Hetzer, ELife (2023).","ama":"Tyagi S, Capitanio JS, Xu J, et al. High-precision mapping of nuclear pore-chromatin interactions reveals new principles of genome organization at the nuclear envelope. <i>eLife</i>. 2023. doi:<a href=\"https://doi.org/10.7554/elife.87462\">10.7554/elife.87462</a>","chicago":"Tyagi, Swati, Juliana S. Capitanio, Jiawei Xu, Fei Chen, Rahul Sharma, Jialiang Huang, and Martin Hetzer. “High-Precision Mapping of Nuclear Pore-Chromatin Interactions Reveals New Principles of Genome Organization at the Nuclear Envelope.” <i>ELife</i>. eLife Sciences Publications, 2023. <a href=\"https://doi.org/10.7554/elife.87462\">https://doi.org/10.7554/elife.87462</a>."},"type":"journal_article","article_processing_charge":"Yes","oa":1},{"status":"public","day":"01","corr_author":"1","citation":{"mla":"Sahu, Rishabh, et al. “Entangling Microwaves and Telecom Wavelength Light.” <i>Frontiers in Optics + Laser Science 2023</i>, LM1F.3, Optica Publishing Group, 2023, doi:<a href=\"https://doi.org/10.1364/ls.2023.lm1f.3\">10.1364/ls.2023.lm1f.3</a>.","ista":"Sahu R, Qiu L, Hease WJ, Arnold GM, Minoguchi Y, Rabl P, Fink JM. 2023. Entangling microwaves and telecom wavelength light. Frontiers in Optics + Laser Science 2023. Laser Science, LM1F.3.","apa":"Sahu, R., Qiu, L., Hease, W. J., Arnold, G. M., Minoguchi, Y., Rabl, P., &#38; Fink, J. M. (2023). Entangling microwaves and telecom wavelength light. In <i>Frontiers in Optics + Laser Science 2023</i>. Tacoma, WA, United States: Optica Publishing Group. <a href=\"https://doi.org/10.1364/ls.2023.lm1f.3\">https://doi.org/10.1364/ls.2023.lm1f.3</a>","ieee":"R. Sahu <i>et al.</i>, “Entangling microwaves and telecom wavelength light,” in <i>Frontiers in Optics + Laser Science 2023</i>, Tacoma, WA, United States, 2023.","short":"R. Sahu, L. Qiu, W.J. Hease, G.M. Arnold, Y. Minoguchi, P. Rabl, J.M. Fink, in:, Frontiers in Optics + Laser Science 2023, Optica Publishing Group, 2023.","ama":"Sahu R, Qiu L, Hease WJ, et al. Entangling microwaves and telecom wavelength light. In: <i>Frontiers in Optics + Laser Science 2023</i>. Optica Publishing Group; 2023. doi:<a href=\"https://doi.org/10.1364/ls.2023.lm1f.3\">10.1364/ls.2023.lm1f.3</a>","chicago":"Sahu, Rishabh, Liu Qiu, William J Hease, Georg M Arnold, Yuri Minoguchi, Peter Rabl, and Johannes M Fink. “Entangling Microwaves and Telecom Wavelength Light.” In <i>Frontiers in Optics + Laser Science 2023</i>. Optica Publishing Group, 2023. <a href=\"https://doi.org/10.1364/ls.2023.lm1f.3\">https://doi.org/10.1364/ls.2023.lm1f.3</a>."},"article_processing_charge":"No","type":"conference","department":[{"_id":"JoFi"}],"author":[{"last_name":"Sahu","full_name":"Sahu, Rishabh","id":"47D26E34-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6264-2162","first_name":"Rishabh"},{"first_name":"Liu","last_name":"Qiu","full_name":"Qiu, Liu"},{"first_name":"William J","id":"29705398-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-9868-2166","full_name":"Hease, William J","last_name":"Hease"},{"last_name":"Arnold","full_name":"Arnold, Georg M","first_name":"Georg M","id":"3770C838-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-1397-7876"},{"first_name":"Yuri","full_name":"Minoguchi, Yuri","last_name":"Minoguchi"},{"full_name":"Rabl, Peter","last_name":"Rabl","first_name":"Peter"},{"id":"4B591CBA-F248-11E8-B48F-1D18A9856A87","first_name":"Johannes M","orcid":"0000-0001-8112-028X","full_name":"Fink, Johannes M","last_name":"Fink"}],"article_number":"LM1F.3","title":"Entangling microwaves and telecom wavelength light","_id":"14872","abstract":[{"text":"We entangled microwave and optical photons for the first time as verified by a measured two-mode vacuum squeezing of 0.7 dB. This electro-optic entanglement is the key resource needed to connect cryogenic quantum circuits.","lang":"eng"}],"publication":"Frontiers in Optics + Laser Science 2023","date_published":"2023-10-01T00:00:00Z","publication_status":"published","doi":"10.1364/ls.2023.lm1f.3","quality_controlled":"1","publication_identifier":{"isbn":["9781957171296"]},"oa_version":"None","language":[{"iso":"eng"}],"date_updated":"2024-10-09T21:07:59Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2023","conference":{"end_date":"2023-10-12","start_date":"2023-10-09","name":"Laser Science","location":"Tacoma, WA, United States"},"month":"10","date_created":"2024-01-22T12:29:41Z","publisher":"Optica Publishing Group"},{"oa_version":"None","date_updated":"2025-04-23T07:40:21Z","date_published":"2023-12-02T00:00:00Z","main_file_link":[{"url":"https://doi.org/10.5281/zenodo.10251087","open_access":"1"}],"_id":"14892","abstract":[{"text":"Code and data necessary to reproduce the simulations and data analyses reported in our manuscript: Tomé, D.F., Zhang, Y., Aida, T., Mosto, O., Lu, Y., Chen, M., Sadeh, S., Roy, D. S., Clopath, C. Dynamic and selective engrams emerge with memory consolidation. 2023.","lang":"eng"}],"doi":"10.5281/ZENODO.10251087","has_accepted_license":"1","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"date_created":"2024-01-29T09:06:43Z","month":"12","related_material":{"record":[{"status":"public","id":"14887","relation":"used_in_publication"}]},"publisher":"Zenodo","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","ddc":["570"],"year":"2023","citation":{"ieee":"D. Feitosa Tomé, “douglastome/dynamic-engrams: Dynamic and selective engrams emerge with memory consolidation.” Zenodo, 2023.","ista":"Feitosa Tomé D. 2023. douglastome/dynamic-engrams: Dynamic and selective engrams emerge with memory consolidation, Zenodo, <a href=\"https://doi.org/10.5281/ZENODO.10251087\">10.5281/ZENODO.10251087</a>.","apa":"Feitosa Tomé, D. (2023). douglastome/dynamic-engrams: Dynamic and selective engrams emerge with memory consolidation. Zenodo. <a href=\"https://doi.org/10.5281/ZENODO.10251087\">https://doi.org/10.5281/ZENODO.10251087</a>","mla":"Feitosa Tomé, Douglas. <i>Douglastome/Dynamic-Engrams: Dynamic and Selective Engrams Emerge with Memory Consolidation</i>. Zenodo, 2023, doi:<a href=\"https://doi.org/10.5281/ZENODO.10251087\">10.5281/ZENODO.10251087</a>.","chicago":"Feitosa Tomé, Douglas. “Douglastome/Dynamic-Engrams: Dynamic and Selective Engrams Emerge with Memory Consolidation.” Zenodo, 2023. <a href=\"https://doi.org/10.5281/ZENODO.10251087\">https://doi.org/10.5281/ZENODO.10251087</a>.","ama":"Feitosa Tomé D. douglastome/dynamic-engrams: Dynamic and selective engrams emerge with memory consolidation. 2023. doi:<a href=\"https://doi.org/10.5281/ZENODO.10251087\">10.5281/ZENODO.10251087</a>","short":"D. Feitosa Tomé, (2023)."},"corr_author":"1","oa":1,"type":"research_data_reference","article_processing_charge":"No","status":"public","day":"02","author":[{"id":"0eed2d40-3d48-11ec-8d38-f789cc2e40b2","first_name":"Douglas","last_name":"Feitosa Tomé","full_name":"Feitosa Tomé, Douglas"}],"title":"douglastome/dynamic-engrams: Dynamic and selective engrams emerge with memory consolidation","department":[{"_id":"TiVo"}]},{"department":[{"_id":"FrPe"}],"title":"Air temperature and near-surface meteorology datasets on three Swiss glaciers - Extreme 2022 Summer","author":[{"full_name":"Shaw, Thomas","last_name":"Shaw","first_name":"Thomas","id":"3caa3f91-1f03-11ee-96ce-e0e553054d6e","orcid":"0000-0001-7640-6152"},{"full_name":"Buri, Pascal","last_name":"Buri","first_name":"Pascal","id":"317987aa-9421-11ee-ac5a-b941b041abba"},{"first_name":"Michael","full_name":"McCarthy, Michael","last_name":"McCarthy"},{"first_name":"Evan","last_name":"Miles","full_name":"Miles, Evan"},{"orcid":"0000-0002-5554-8087","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","first_name":"Francesca","full_name":"Pellicciotti, Francesca","last_name":"Pellicciotti"}],"day":"23","status":"public","oa":1,"article_processing_charge":"No","type":"research_data_reference","citation":{"chicago":"Shaw, Thomas, Pascal Buri, Michael McCarthy, Evan Miles, and Francesca Pellicciotti. “Air Temperature and Near-Surface Meteorology Datasets on Three Swiss Glaciers - Extreme 2022 Summer.” Zenodo, 2023. <a href=\"https://doi.org/10.5281/ZENODO.8277285\">https://doi.org/10.5281/ZENODO.8277285</a>.","short":"T. Shaw, P. Buri, M. McCarthy, E. Miles, F. Pellicciotti, (2023).","ama":"Shaw T, Buri P, McCarthy M, Miles E, Pellicciotti F. Air temperature and near-surface meteorology datasets on three Swiss glaciers - Extreme 2022 Summer. 2023. doi:<a href=\"https://doi.org/10.5281/ZENODO.8277285\">10.5281/ZENODO.8277285</a>","ieee":"T. Shaw, P. Buri, M. McCarthy, E. Miles, and F. Pellicciotti, “Air temperature and near-surface meteorology datasets on three Swiss glaciers - Extreme 2022 Summer.” Zenodo, 2023.","ista":"Shaw T, Buri P, McCarthy M, Miles E, Pellicciotti F. 2023. Air temperature and near-surface meteorology datasets on three Swiss glaciers - Extreme 2022 Summer, Zenodo, <a href=\"https://doi.org/10.5281/ZENODO.8277285\">10.5281/ZENODO.8277285</a>.","apa":"Shaw, T., Buri, P., McCarthy, M., Miles, E., &#38; Pellicciotti, F. (2023). Air temperature and near-surface meteorology datasets on three Swiss glaciers - Extreme 2022 Summer. Zenodo. <a href=\"https://doi.org/10.5281/ZENODO.8277285\">https://doi.org/10.5281/ZENODO.8277285</a>","mla":"Shaw, Thomas, et al. <i>Air Temperature and Near-Surface Meteorology Datasets on Three Swiss Glaciers - Extreme 2022 Summer</i>. Zenodo, 2023, doi:<a href=\"https://doi.org/10.5281/ZENODO.8277285\">10.5281/ZENODO.8277285</a>."},"corr_author":"1","ddc":["550"],"year":"2023","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"Zenodo","related_material":{"record":[{"status":"public","relation":"used_in_publication","id":"14885"}]},"date_created":"2024-01-31T12:08:26Z","month":"08","doi":"10.5281/ZENODO.8277285","date_published":"2023-08-23T00:00:00Z","main_file_link":[{"url":"https://doi.org/10.5281/ZENODO.8277285","open_access":"1"}],"_id":"14919","abstract":[{"text":"GLACIER METEOROLOGICAL DATA SWISS ALPS -2022\r\n","lang":"eng"}],"date_updated":"2025-09-04T11:58:38Z","oa_version":"Published Version"},{"quality_controlled":"1","language":[{"iso":"eng"}],"date_updated":"2025-04-14T07:55:57Z","_id":"14920","date_published":"2023-02-24T00:00:00Z","month":"02","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"has_accepted_license":"1","year":"2023","ddc":["000"],"arxiv":1,"corr_author":"1","status":"public","volume":2,"title":"Fast symbolic algorithms for mega-regular games under strong transition fairness","oa_version":"Published Version","publication_identifier":{"issn":["2751-4838"]},"abstract":[{"lang":"eng","text":"We consider fixpoint algorithms for two-player games on graphs with $\\omega$-regular winning conditions, where the environment is constrained by a strong transition fairness assumption. Strong transition fairness is a widely occurring special case of strong fairness, which requires that any execution is strongly fair with respect to a specified set of live edges: whenever the\r\nsource vertex of a live edge is visited infinitely often along a play, the edge itself is traversed infinitely often along the play as well. We show that, surprisingly, strong transition fairness retains the algorithmic characteristics of the fixpoint algorithms for $\\omega$-regular games -- the new algorithms have the same alternation depth as the classical algorithms but invoke a new type of predecessor operator. For Rabin games with $k$ pairs, the complexity of the new algorithm is $O(n^{k+2}k!)$ symbolic steps, which is independent of the number of live edges in the strong transition fairness assumption. Further, we show that GR(1) specifications with strong transition fairness assumptions can be solved with a 3-nested fixpoint algorithm, same as the usual algorithm. In contrast, strong fairness necessarily requires increasing the alternation depth depending on the number of fairness assumptions. We get symbolic algorithms for (generalized) Rabin, parity and GR(1) objectives under strong transition fairness assumptions as well as a direct symbolic algorithm for qualitative winning in stochastic\r\n$\\omega$-regular games that runs in $O(n^{k+2}k!)$ symbolic steps, improving the state of the art. Finally, we have implemented a BDD-based synthesis engine based on our algorithm. We show on a set of synthetic and real benchmarks that our algorithm is scalable, parallelizable, and outperforms previous algorithms by orders of magnitude."}],"publication":"TheoretiCS","file":[{"access_level":"open_access","content_type":"application/pdf","relation":"main_file","date_created":"2024-02-05T10:19:35Z","file_size":917076,"file_name":"2023_TheoretiCS_Banerjee.pdf","success":1,"checksum":"2972d531122a6f15727b396110fb3f5c","date_updated":"2024-02-05T10:19:35Z","file_id":"14940","creator":"dernst"}],"publication_status":"published","doi":"10.46298/theoretics.23.4","date_created":"2024-01-31T13:40:49Z","article_type":"original","publisher":"EPI Sciences","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"mla":"Banerjee, Tamajit, et al. “Fast Symbolic Algorithms for Mega-Regular Games under Strong Transition Fairness.” <i>TheoretiCS</i>, vol. 2, 4, EPI Sciences, 2023, doi:<a href=\"https://doi.org/10.46298/theoretics.23.4\">10.46298/theoretics.23.4</a>.","ista":"Banerjee T, Majumdar R, Mallik K, Schmuck A-K, Soudjani S. 2023. Fast symbolic algorithms for mega-regular games under strong transition fairness. TheoretiCS. 2, 4.","apa":"Banerjee, T., Majumdar, R., Mallik, K., Schmuck, A.-K., &#38; Soudjani, S. (2023). Fast symbolic algorithms for mega-regular games under strong transition fairness. <i>TheoretiCS</i>. EPI Sciences. <a href=\"https://doi.org/10.46298/theoretics.23.4\">https://doi.org/10.46298/theoretics.23.4</a>","ieee":"T. Banerjee, R. Majumdar, K. Mallik, A.-K. Schmuck, and S. Soudjani, “Fast symbolic algorithms for mega-regular games under strong transition fairness,” <i>TheoretiCS</i>, vol. 2. EPI Sciences, 2023.","short":"T. Banerjee, R. Majumdar, K. Mallik, A.-K. Schmuck, S. Soudjani, TheoretiCS 2 (2023).","ama":"Banerjee T, Majumdar R, Mallik K, Schmuck A-K, Soudjani S. Fast symbolic algorithms for mega-regular games under strong transition fairness. <i>TheoretiCS</i>. 2023;2. doi:<a href=\"https://doi.org/10.46298/theoretics.23.4\">10.46298/theoretics.23.4</a>","chicago":"Banerjee, Tamajit, Rupak Majumdar, Kaushik Mallik, Anne-Kathrin Schmuck, and Sadegh Soudjani. “Fast Symbolic Algorithms for Mega-Regular Games under Strong Transition Fairness.” <i>TheoretiCS</i>. EPI Sciences, 2023. <a href=\"https://doi.org/10.46298/theoretics.23.4\">https://doi.org/10.46298/theoretics.23.4</a>."},"article_processing_charge":"Yes","type":"journal_article","oa":1,"intvolume":"         2","day":"24","file_date_updated":"2024-02-05T10:19:35Z","author":[{"first_name":"Tamajit","full_name":"Banerjee, Tamajit","last_name":"Banerjee"},{"last_name":"Majumdar","full_name":"Majumdar, Rupak","first_name":"Rupak"},{"full_name":"Mallik, Kaushik","last_name":"Mallik","id":"0834ff3c-6d72-11ec-94e0-b5b0a4fb8598","orcid":"0000-0001-9864-7475","first_name":"Kaushik"},{"first_name":"Anne-Kathrin","full_name":"Schmuck, Anne-Kathrin","last_name":"Schmuck"},{"first_name":"Sadegh","last_name":"Soudjani","full_name":"Soudjani, Sadegh"}],"article_number":"4","external_id":{"arxiv":["2202.07480"]},"ec_funded":1,"project":[{"_id":"62781420-2b32-11ec-9570-8d9b63373d4d","grant_number":"101020093","name":"Vigilant Algorithmic Monitoring of Software","call_identifier":"H2020"}],"department":[{"_id":"ToHe"}],"acknowledgement":"A previous version of this paper has appeared in TACAS 2022. Authors ordered alphabetically. T. Banerjee was interning with MPI-SWS when this research was conducted. R. Majumdar and A.-K. Schmuck are partially supported by DFG project 389792660 TRR 248–CPEC. A.-K. Schmuck is additionally funded through DFG project (SCHM 3541/1-1). K. Mallik is supported by the ERC project ERC-2020-AdG 101020093."},{"title":"Deep neural collapse is provably optimal for the deep unconstrained features model","external_id":{"arxiv":["2305.13165"]},"author":[{"last_name":"Súkeník","full_name":"Súkeník, Peter","id":"d64d6a8d-eb8e-11eb-b029-96fd216dec3c","first_name":"Peter"},{"orcid":"0000-0002-3242-7020","id":"27EB676C-8706-11E9-9510-7717E6697425","first_name":"Marco","full_name":"Mondelli, Marco","last_name":"Mondelli"},{"last_name":"Lampert","full_name":"Lampert, Christoph","first_name":"Christoph","orcid":"0000-0001-8622-7887","id":"40C20FD2-F248-11E8-B48F-1D18A9856A87"}],"acknowledgement":"M. M. is partially supported by the 2019 Lopez-Loreta Prize. The authors would like to thank Eugenia Iofinova, Bernd Prach and Simone Bombari for valuable feedback on the manuscript.","department":[{"_id":"MaMo"},{"_id":"ChLa"}],"project":[{"name":"Prix Lopez-Loretta 2019 - Marco Mondelli","_id":"059876FA-7A3F-11EA-A408-12923DDC885E"}],"oa":1,"article_processing_charge":"No","type":"conference","citation":{"mla":"Súkeník, Peter, et al. “Deep Neural Collapse Is Provably Optimal for the Deep Unconstrained Features Model.” <i>37th Annual Conference on Neural Information Processing Systems</i>, 2023.","ista":"Súkeník P, Mondelli M, Lampert C. 2023. Deep neural collapse is provably optimal for the deep unconstrained features model. 37th Annual Conference on Neural Information Processing Systems. NeurIPS: Neural Information Processing Systems, NeurIPS, .","apa":"Súkeník, P., Mondelli, M., &#38; Lampert, C. (2023). Deep neural collapse is provably optimal for the deep unconstrained features model. In <i>37th Annual Conference on Neural Information Processing Systems</i>. New Orleans, LA, United States.","ieee":"P. Súkeník, M. Mondelli, and C. Lampert, “Deep neural collapse is provably optimal for the deep unconstrained features model,” in <i>37th Annual Conference on Neural Information Processing Systems</i>, New Orleans, LA, United States, 2023.","ama":"Súkeník P, Mondelli M, Lampert C. Deep neural collapse is provably optimal for the deep unconstrained features model. In: <i>37th Annual Conference on Neural Information Processing Systems</i>. ; 2023.","short":"P. Súkeník, M. Mondelli, C. Lampert, in:, 37th Annual Conference on Neural Information Processing Systems, 2023.","chicago":"Súkeník, Peter, Marco Mondelli, and Christoph Lampert. “Deep Neural Collapse Is Provably Optimal for the Deep Unconstrained Features Model.” In <i>37th Annual Conference on Neural Information Processing Systems</i>, 2023."},"arxiv":1,"corr_author":"1","day":"15","status":"public","date_created":"2024-02-02T11:17:41Z","month":"12","conference":{"location":"New Orleans, LA, United States","start_date":"2023-12-10","name":"NeurIPS: Neural Information Processing Systems","end_date":"2023-12-16"},"year":"2023","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","language":[{"iso":"eng"}],"date_updated":"2025-04-15T07:50:16Z","oa_version":"Preprint","quality_controlled":"1","alternative_title":["NeurIPS"],"publication_status":"published","date_published":"2023-12-15T00:00:00Z","_id":"14921","publication":"37th Annual Conference on Neural Information Processing Systems","main_file_link":[{"open_access":"1","url":" https://doi.org/10.48550/arXiv.2305.13165"}],"abstract":[{"lang":"eng","text":"Neural collapse (NC) refers to the surprising structure of the last layer of deep neural networks in the terminal phase of gradient descent training. Recently, an increasing amount of experimental evidence has pointed to the propagation of NC to earlier layers of neural networks. However, while the NC in the last layer is well studied theoretically, much less is known about its multi-layered counterpart - deep neural collapse (DNC). In particular, existing work focuses either on linear layers or only on the last two layers at the price of an extra assumption. Our paper fills this gap by generalizing the established analytical framework for NC - the unconstrained features model - to multiple non-linear layers. Our key technical contribution is to show that, in a deep unconstrained features model, the unique global optimum for binary classification exhibits all the properties typical of DNC. This explains the existing experimental evidence of DNC. We also empirically show that (i) by optimizing deep unconstrained features models via gradient descent, the resulting solution agrees well with our theory, and (ii) trained networks recover the unconstrained features suitable for the occurrence of DNC, thus supporting the validity of this modeling principle."}]},{"acknowledgement":"The authors are partially supported by the 2019 Lopez-Loreta Prize. They would also like to thank Professor Jan Maas for providing valuable suggestions and comments on an early version of the work.","department":[{"_id":"MaMo"}],"project":[{"name":"Prix Lopez-Loretta 2019 - Marco Mondelli","_id":"059876FA-7A3F-11EA-A408-12923DDC885E"}],"external_id":{"arxiv":["2303.07245"]},"scopus_import":"1","author":[{"full_name":"Esposito, Amedeo Roberto","last_name":"Esposito","id":"9583e921-e1ad-11ec-9862-cef099626dc9","first_name":"Amedeo Roberto"},{"orcid":"0000-0002-3242-7020","id":"27EB676C-8706-11E9-9510-7717E6697425","first_name":"Marco","full_name":"Mondelli, Marco","last_name":"Mondelli"}],"day":"30","oa":1,"article_processing_charge":"No","type":"conference","citation":{"ieee":"A. R. Esposito and M. Mondelli, “Concentration without independence via information measures,” in <i>Proceedings of 2023 IEEE International Symposium on Information Theory</i>, Taipei, Taiwan, 2023, pp. 400–405.","mla":"Esposito, Amedeo Roberto, and Marco Mondelli. “Concentration without Independence via Information Measures.” <i>Proceedings of 2023 IEEE International Symposium on Information Theory</i>, IEEE, 2023, pp. 400–05, doi:<a href=\"https://doi.org/10.1109/isit54713.2023.10206899\">10.1109/isit54713.2023.10206899</a>.","ista":"Esposito AR, Mondelli M. 2023. Concentration without independence via information measures. Proceedings of 2023 IEEE International Symposium on Information Theory. ISIT: International Symposium on Information Theory, 400–405.","apa":"Esposito, A. R., &#38; Mondelli, M. (2023). Concentration without independence via information measures. In <i>Proceedings of 2023 IEEE International Symposium on Information Theory</i> (pp. 400–405). Taipei, Taiwan: IEEE. <a href=\"https://doi.org/10.1109/isit54713.2023.10206899\">https://doi.org/10.1109/isit54713.2023.10206899</a>","chicago":"Esposito, Amedeo Roberto, and Marco Mondelli. “Concentration without Independence via Information Measures.” In <i>Proceedings of 2023 IEEE International Symposium on Information Theory</i>, 400–405. IEEE, 2023. <a href=\"https://doi.org/10.1109/isit54713.2023.10206899\">https://doi.org/10.1109/isit54713.2023.10206899</a>.","short":"A.R. Esposito, M. Mondelli, in:, Proceedings of 2023 IEEE International Symposium on Information Theory, IEEE, 2023, pp. 400–405.","ama":"Esposito AR, Mondelli M. Concentration without independence via information measures. In: <i>Proceedings of 2023 IEEE International Symposium on Information Theory</i>. IEEE; 2023:400-405. doi:<a href=\"https://doi.org/10.1109/isit54713.2023.10206899\">10.1109/isit54713.2023.10206899</a>"},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"IEEE","date_created":"2024-02-02T11:18:40Z","doi":"10.1109/isit54713.2023.10206899","publication_status":"published","abstract":[{"lang":"eng","text":"We propose a novel approach to concentration for non-independent random variables. The main idea is to ``pretend'' that the random variables are independent and pay a multiplicative price measuring how far they are from actually being independent. This price is encapsulated in the Hellinger integral between the joint and the product of the marginals, which is then upper bounded leveraging tensorisation properties. Our bounds represent a natural generalisation of concentration inequalities in the presence of dependence: we recover exactly the classical bounds (McDiarmid's inequality) when the random variables are independent. Furthermore, in a ``large deviations'' regime, we obtain the same decay in the probability as for the independent case, even when the random variables display non-trivial dependencies. To show this, we consider a number of applications of interest. First, we provide a bound for Markov chains with finite state space. Then, we consider the Simple Symmetric Random Walk, which is a non-contracting Markov chain, and a non-Markovian setting in which the stochastic process depends on its entire past. To conclude, we propose an application to Markov Chain Monte Carlo methods, where our approach leads to an improved lower bound on the minimum burn-in period required to reach a certain accuracy. In all of these settings, we provide a regime of parameters in which our bound fares better than what the state of the art can provide."}],"publication":"Proceedings of 2023 IEEE International Symposium on Information Theory","oa_version":"Preprint","publication_identifier":{"eisbn":["9781665475549"],"eissn":["2157-8117"]},"title":"Concentration without independence via information measures","status":"public","page":"400-405","arxiv":1,"corr_author":"1","conference":{"end_date":"2023-06-30","start_date":"2023-06-25","name":"ISIT: International Symposium on Information Theory","location":"Taipei, Taiwan"},"year":"2023","related_material":{"record":[{"id":"15172","relation":"later_version","status":"public"}]},"month":"06","date_published":"2023-06-30T00:00:00Z","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2303.07245"}],"_id":"14922","language":[{"iso":"eng"}],"date_updated":"2025-09-04T13:06:52Z","quality_controlled":"1"}]