[{"file_date_updated":"2024-02-08T16:03:08Z","day":"01","status":"public","oa":1,"article_processing_charge":"No","type":"conference","citation":{"short":"C. Zhang, D. Janzing, M. van der Schaar, F. Locatello, P. Spirtes, K. Zhang, B. Schölkopf, C. Uhler, in:, 2nd Conference on Causal Learning and Reasoning, n.d.","ama":"Zhang C, Janzing D, van der Schaar M, et al. Causality in the time of LLMs: Round table discussion results of CLeaR 2023. In: <i>2nd Conference on Causal Learning and Reasoning</i>.","chicago":"Zhang, Cheng, Dominik Janzing, Mihaela  van der Schaar, Francesco Locatello, Peter Spirtes, Kun Zhang, Bernhard Schölkopf, and Caroline Uhler. “Causality in the Time of LLMs: Round Table Discussion Results of CLeaR 2023.” In <i>2nd Conference on Causal Learning and Reasoning</i>, n.d.","ista":"Zhang C, Janzing D, van der Schaar M, Locatello F, Spirtes P, Zhang K, Schölkopf B, Uhler C. Causality in the time of LLMs: Round table discussion results of CLeaR 2023. 2nd Conference on Causal Learning and Reasoning. CLeaR: Conference on Causal Learning and Reasoning.","apa":"Zhang, C., Janzing, D., van der Schaar, M., Locatello, F., Spirtes, P., Zhang, K., … Uhler, C. (n.d.). Causality in the time of LLMs: Round table discussion results of CLeaR 2023. In <i>2nd Conference on Causal Learning and Reasoning</i>. Tübingen, Germany.","mla":"Zhang, Cheng, et al. “Causality in the Time of LLMs: Round Table Discussion Results of CLeaR 2023.” <i>2nd Conference on Causal Learning and Reasoning</i>.","ieee":"C. Zhang <i>et al.</i>, “Causality in the time of LLMs: Round table discussion results of CLeaR 2023,” in <i>2nd Conference on Causal Learning and Reasoning</i>, Tübingen, Germany."},"department":[{"_id":"FrLo"}],"title":"Causality in the time of LLMs: Round table discussion results of CLeaR 2023","author":[{"last_name":"Zhang","full_name":"Zhang, Cheng","first_name":"Cheng"},{"first_name":"Dominik","last_name":"Janzing","full_name":"Janzing, Dominik"},{"first_name":"Mihaela ","full_name":"van der Schaar, Mihaela ","last_name":"van der Schaar"},{"full_name":"Locatello, Francesco","last_name":"Locatello","orcid":"0000-0002-4850-0683","first_name":"Francesco","id":"26cfd52f-2483-11ee-8040-88983bcc06d4"},{"full_name":"Spirtes, Peter","last_name":"Spirtes","first_name":"Peter"},{"full_name":"Zhang, Kun","last_name":"Zhang","first_name":"Kun"},{"first_name":"Bernhard","full_name":"Schölkopf, Bernhard","last_name":"Schölkopf"},{"first_name":"Caroline","id":"49ADD78E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-7008-0216","last_name":"Uhler","full_name":"Uhler, Caroline"}],"extern":"1","date_published":"2023-05-01T00:00:00Z","publication_status":"submitted","_id":"14974","file":[{"file_name":"CLeaR23_roundtable_discussion.pdf","checksum":"105ff58e55de866ce76967f3a95e82f7","file_id":"14975","creator":"ptazenko","date_updated":"2024-02-08T16:03:08Z","date_created":"2024-02-08T16:03:08Z","file_size":215629,"access_level":"open_access","relation":"main_file","content_type":"application/pdf"}],"abstract":[{"text":"The field of machine learning and AI has witnessed remarkable breakthroughs with the emergence of LLMs, which have also sparked a lively debate in the causal community. As researchers in this field, we are interested in exploring how LLMs relate to causality research, and how we can leverage the technology to advance it. In the second conference of Causal Learning and Reasoning (CLeaR), 2023, we held a round table discussion to gather and integrate the diverse perspectives of the CLeaR community on this topic.\r\nThere is a general consensus that LLMs are not yet capable of causal reasoning at the current\r\nstage but has a lot of potential with public available information by CLeaR 2023. Enhancing causal machine learning is vital not only for its own sake but also to help LLMs improve their performance, especially regarding trustworthiness. In this document, we present both the summary and the raw outcome of the round table discussion. We acknowledge that with the progress of both fields, the opportunities and impact may rapidly change. We will repeat the same exercise in CLeaR 2024 to document the evolution.","lang":"eng"}],"publication":"2nd Conference on Causal Learning and Reasoning","language":[{"iso":"eng"}],"date_updated":"2025-08-05T11:19:37Z","oa_version":"Submitted Version","quality_controlled":"1","conference":{"end_date":"2023-04-14","name":"CLeaR: Conference on Causal Learning and Reasoning","start_date":"2023-04-11","location":"Tübingen, Germany"},"year":"2023","ddc":["000"],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","has_accepted_license":"1","date_created":"2024-02-08T16:03:18Z","month":"05"},{"ddc":["540"],"year":"2023","month":"01","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"has_accepted_license":"1","_id":"14985","date_published":"2023-01-01T00:00:00Z","quality_controlled":"1","language":[{"iso":"eng"}],"date_updated":"2024-02-19T10:01:26Z","volume":2,"title":"Lattice expansion enables interstitial doping to achieve a high average ZT in n‐type PbS","status":"public","page":"161-170","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_created":"2024-02-14T12:12:17Z","publisher":"Wiley","article_type":"original","publication":"Interdisciplinary Materials","file":[{"checksum":"7b5e8210ef1434feb173022c6dbbee0c","file_name":"2023_InterdiscMaterials_Liu.pdf","success":1,"creator":"dernst","file_id":"15015","date_updated":"2024-02-19T09:58:32Z","file_size":4675941,"date_created":"2024-02-19T09:58:32Z","relation":"main_file","content_type":"application/pdf","access_level":"open_access"}],"abstract":[{"text":"Lead sulfide (PbS) presents large potential in thermoelectric application due to its earth-abundant S element. However, its inferior average ZT (ZTave) value makes PbS less competitive with its analogs PbTe and PbSe. To promote its thermoelectric performance, this study implements strategies of continuous Se alloying and Cu interstitial doping to synergistically tune thermal and electrical transport properties in n-type PbS. First, the lattice parameter of 5.93 Å in PbS is linearly expanded to 6.03 Å in PbS0.5Se0.5 with increasing Se alloying content. This expanded lattice in Se-alloyed PbS not only intensifies phonon scattering but also facilitates the formation of Cu interstitials. Based on the PbS0.6Se0.4 content with the minimal lattice thermal conductivity, Cu interstitials are introduced to improve the electron density, thus boosting the peak power factor, from 3.88 μW cm−1 K−2 in PbS0.6Se0.4 to 20.58 μW cm−1 K−2 in PbS0.6Se0.4−1%Cu. Meanwhile, the lattice thermal conductivity in PbS0.6Se0.4−x%Cu (x = 0–2) is further suppressed due to the strong strain field caused by Cu interstitials. Finally, with the lowered thermal conductivity and high electrical transport properties, a peak ZT ~1.1 and ZTave ~0.82 can be achieved in PbS0.6Se0.4 − 1%Cu at 300–773K, which outperforms previously reported n-type PbS.","lang":"eng"}],"publication_status":"published","doi":"10.1002/idm2.12056","oa_version":"Published Version","publication_identifier":{"eissn":["2767-441X"]},"acknowledgement":"The authors would like to acknowledge the strong supportof microstructure observation from Center for HighPressure Science and Technology Advanced Research(HPSTAR). We acknowledge the financial support fromthe  National  Natural  Science  Foundation  of  China:52172236, the Fundamental Research Funds for theCentral Universities: xtr042021007, Top Young TalentsProgramme of Xi'an Jiaotong University and NationalScience Fund for Distinguished Young Scholars: 51925101.","department":[{"_id":"MaIb"}],"issue":"1","author":[{"first_name":"Zhengtao","last_name":"Liu","full_name":"Liu, Zhengtao"},{"last_name":"Hong","full_name":"Hong, Tao","first_name":"Tao"},{"first_name":"Liqing","last_name":"Xu","full_name":"Xu, Liqing"},{"first_name":"Sining","last_name":"Wang","full_name":"Wang, Sining"},{"first_name":"Xiang","full_name":"Gao, Xiang","last_name":"Gao"},{"last_name":"Chang","full_name":"Chang, Cheng","orcid":"0000-0002-9515-4277","id":"9E331C2E-9F27-11E9-AE48-5033E6697425","first_name":"Cheng"},{"full_name":"Ding, Xiangdong","last_name":"Ding","first_name":"Xiangdong"},{"last_name":"Xiao","full_name":"Xiao, Yu","first_name":"Yu"},{"last_name":"Zhao","full_name":"Zhao, Li‐Dong","first_name":"Li‐Dong"}],"intvolume":"         2","day":"01","file_date_updated":"2024-02-19T09:58:32Z","citation":{"ista":"Liu Z, Hong T, Xu L, Wang S, Gao X, Chang C, Ding X, Xiao Y, Zhao L. 2023. Lattice expansion enables interstitial doping to achieve a high average ZT in n‐type PbS. Interdisciplinary Materials. 2(1), 161–170.","apa":"Liu, Z., Hong, T., Xu, L., Wang, S., Gao, X., Chang, C., … Zhao, L. (2023). Lattice expansion enables interstitial doping to achieve a high average ZT in n‐type PbS. <i>Interdisciplinary Materials</i>. Wiley. <a href=\"https://doi.org/10.1002/idm2.12056\">https://doi.org/10.1002/idm2.12056</a>","mla":"Liu, Zhengtao, et al. “Lattice Expansion Enables Interstitial Doping to Achieve a High Average ZT in N‐type PbS.” <i>Interdisciplinary Materials</i>, vol. 2, no. 1, Wiley, 2023, pp. 161–70, doi:<a href=\"https://doi.org/10.1002/idm2.12056\">10.1002/idm2.12056</a>.","ieee":"Z. Liu <i>et al.</i>, “Lattice expansion enables interstitial doping to achieve a high average ZT in n‐type PbS,” <i>Interdisciplinary Materials</i>, vol. 2, no. 1. Wiley, pp. 161–170, 2023.","ama":"Liu Z, Hong T, Xu L, et al. Lattice expansion enables interstitial doping to achieve a high average ZT in n‐type PbS. <i>Interdisciplinary Materials</i>. 2023;2(1):161-170. doi:<a href=\"https://doi.org/10.1002/idm2.12056\">10.1002/idm2.12056</a>","short":"Z. Liu, T. Hong, L. Xu, S. Wang, X. Gao, C. Chang, X. Ding, Y. Xiao, L. Zhao, Interdisciplinary Materials 2 (2023) 161–170.","chicago":"Liu, Zhengtao, Tao Hong, Liqing Xu, Sining Wang, Xiang Gao, Cheng Chang, Xiangdong Ding, Yu Xiao, and Li‐Dong Zhao. “Lattice Expansion Enables Interstitial Doping to Achieve a High Average ZT in N‐type PbS.” <i>Interdisciplinary Materials</i>. Wiley, 2023. <a href=\"https://doi.org/10.1002/idm2.12056\">https://doi.org/10.1002/idm2.12056</a>."},"type":"journal_article","article_processing_charge":"Yes","oa":1},{"acknowledgement":"This work is supported by the Novi team at Meta and funded in part by IC3 industry partners and NSF grant 1943499.","department":[{"_id":"ElKo"}],"author":[{"last_name":"Malvai","full_name":"Malvai, Harjasleen","first_name":"Harjasleen"},{"orcid":"0000-0002-8827-3382","first_name":"Eleftherios","id":"f5983044-d7ef-11ea-ac6d-fd1430a26d30","last_name":"Kokoris Kogias","full_name":"Kokoris Kogias, Eleftherios"},{"last_name":"Sonnino","full_name":"Sonnino, Alberto","first_name":"Alberto"},{"first_name":"Esha","full_name":"Ghosh, Esha","last_name":"Ghosh"},{"full_name":"Oztürk, Ercan","last_name":"Oztürk","first_name":"Ercan"},{"first_name":"Kevin","full_name":"Lewi, Kevin","last_name":"Lewi"},{"first_name":"Sean","full_name":"Lawlor, Sean","last_name":"Lawlor"}],"scopus_import":"1","title":"Parakeet: Practical key transparency for end-to-end eEncrypted messaging","status":"public","day":"01","citation":{"chicago":"Malvai, Harjasleen, Eleftherios Kokoris Kogias, Alberto Sonnino, Esha Ghosh, Ercan Oztürk, Kevin Lewi, and Sean Lawlor. “Parakeet: Practical Key Transparency for End-to-End EEncrypted Messaging.” In <i>Proceedings of the 2023 Network and Distributed System Security Symposium</i>. Internet Society, 2023. <a href=\"https://doi.org/10.14722/ndss.2023.24545\">https://doi.org/10.14722/ndss.2023.24545</a>.","ama":"Malvai H, Kokoris Kogias E, Sonnino A, et al. Parakeet: Practical key transparency for end-to-end eEncrypted messaging. In: <i>Proceedings of the 2023 Network and Distributed System Security Symposium</i>. Internet Society; 2023. doi:<a href=\"https://doi.org/10.14722/ndss.2023.24545\">10.14722/ndss.2023.24545</a>","short":"H. Malvai, E. Kokoris Kogias, A. Sonnino, E. Ghosh, E. Oztürk, K. Lewi, S. Lawlor, in:, Proceedings of the 2023 Network and Distributed System Security Symposium, Internet Society, 2023.","ieee":"H. Malvai <i>et al.</i>, “Parakeet: Practical key transparency for end-to-end eEncrypted messaging,” in <i>Proceedings of the 2023 Network and Distributed System Security Symposium</i>, San Diego, CA, United States, 2023.","ista":"Malvai H, Kokoris Kogias E, Sonnino A, Ghosh E, Oztürk E, Lewi K, Lawlor S. 2023. Parakeet: Practical key transparency for end-to-end eEncrypted messaging. Proceedings of the 2023 Network and Distributed System Security Symposium. NDSS: Network and Distributed Systems Security.","apa":"Malvai, H., Kokoris Kogias, E., Sonnino, A., Ghosh, E., Oztürk, E., Lewi, K., &#38; Lawlor, S. (2023). Parakeet: Practical key transparency for end-to-end eEncrypted messaging. In <i>Proceedings of the 2023 Network and Distributed System Security Symposium</i>. San Diego, CA, United States: Internet Society. <a href=\"https://doi.org/10.14722/ndss.2023.24545\">https://doi.org/10.14722/ndss.2023.24545</a>","mla":"Malvai, Harjasleen, et al. “Parakeet: Practical Key Transparency for End-to-End EEncrypted Messaging.” <i>Proceedings of the 2023 Network and Distributed System Security Symposium</i>, Internet Society, 2023, doi:<a href=\"https://doi.org/10.14722/ndss.2023.24545\">10.14722/ndss.2023.24545</a>."},"type":"conference","article_processing_charge":"No","oa":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2023","ddc":["000"],"conference":{"name":"NDSS: Network and Distributed Systems Security","start_date":"2023-02-27","end_date":"2023-03-03","location":"San Diego, CA, United States"},"month":"03","date_created":"2024-02-14T14:20:40Z","publisher":"Internet Society","_id":"14989","publication":"Proceedings of the 2023 Network and Distributed System Security Symposium","abstract":[{"lang":"eng","text":"Encryption alone is not enough for secure end-to end encrypted messaging: a server must also honestly serve public keys to users. Key transparency has been presented as an efficient\r\nsolution for detecting (and hence deterring) a server that attempts to dishonestly serve keys. Key transparency involves two major components: (1) a username to public key mapping, stored and cryptographically committed to by the server, and, (2) an outof-band consistency protocol for serving short commitments to users. In the setting of real-world deployments and supporting production scale, new challenges must be considered for both of these components. We enumerate these challenges and provide solutions to address them. In particular, we design and implement a memory-optimized and privacy-preserving verifiable data structure for committing to the username to public key store.\r\nTo make this implementation viable for production, we also integrate support for persistent and distributed storage. We also propose a future-facing solution, termed “compaction”, as\r\na mechanism for mitigating practical issues that arise from dealing with infinitely growing server data structures. Finally, we implement a consensusless solution that achieves the minimum requirements for a service that consistently distributes commitments for a transparency application, providing a much more efficient protocol for distributing small and consistent\r\ncommitments to users. This culminates in our production-grade implementation of a key transparency system (Parakeet) which we have open-sourced, along with a demonstration of feasibility through our benchmarks."}],"main_file_link":[{"open_access":"1","url":"https://eprint.iacr.org/2023/081"}],"publication_status":"published","date_published":"2023-03-01T00:00:00Z","doi":"10.14722/ndss.2023.24545","quality_controlled":"1","publication_identifier":{"isbn":["1891562835"]},"oa_version":"Published Version","language":[{"iso":"eng"}],"date_updated":"2026-06-18T17:41:59Z"},{"author":[{"full_name":"Meggendorfer, Tobias","last_name":"Meggendorfer","first_name":"Tobias","id":"b21b0c15-30a2-11eb-80dc-f13ca25802e1","orcid":"0000-0002-1712-2165"}],"title":"Artefact for: Correct Approximation of Stationary Distributions","department":[{"_id":"KrCh"}],"citation":{"short":"T. Meggendorfer, (2023).","ama":"Meggendorfer T. Artefact for: Correct Approximation of Stationary Distributions. 2023. doi:<a href=\"https://doi.org/10.5281/ZENODO.7548214\">10.5281/ZENODO.7548214</a>","chicago":"Meggendorfer, Tobias. “Artefact for: Correct Approximation of Stationary Distributions.” Zenodo, 2023. <a href=\"https://doi.org/10.5281/ZENODO.7548214\">https://doi.org/10.5281/ZENODO.7548214</a>.","ista":"Meggendorfer T. 2023. Artefact for: Correct Approximation of Stationary Distributions, Zenodo, <a href=\"https://doi.org/10.5281/ZENODO.7548214\">10.5281/ZENODO.7548214</a>.","apa":"Meggendorfer, T. (2023). Artefact for: Correct Approximation of Stationary Distributions. Zenodo. <a href=\"https://doi.org/10.5281/ZENODO.7548214\">https://doi.org/10.5281/ZENODO.7548214</a>","mla":"Meggendorfer, Tobias. <i>Artefact for: Correct Approximation of Stationary Distributions</i>. Zenodo, 2023, doi:<a href=\"https://doi.org/10.5281/ZENODO.7548214\">10.5281/ZENODO.7548214</a>.","ieee":"T. Meggendorfer, “Artefact for: Correct Approximation of Stationary Distributions.” Zenodo, 2023."},"corr_author":"1","oa":1,"type":"research_data_reference","article_processing_charge":"No","status":"public","day":"18","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"has_accepted_license":"1","date_created":"2024-02-14T14:27:06Z","month":"01","publisher":"Zenodo","related_material":{"record":[{"relation":"used_in_publication","id":"13139","status":"public"}]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","ddc":["000"],"year":"2023","oa_version":"Published Version","date_updated":"2025-09-09T12:28:12Z","date_published":"2023-01-18T00:00:00Z","main_file_link":[{"url":"https://doi.org/10.5281/zenodo.7548214","open_access":"1"}],"_id":"14990","abstract":[{"text":"The software artefact to evaluate the approximation of stationary distributions implementation.","lang":"eng"}],"doi":"10.5281/ZENODO.7548214"},{"doi":"10.5281/ZENODO.7757041","abstract":[{"text":"This repository contains the data, scripts, WRF codes and files required to reproduce the results of the manuscript \"Assessing Memory in Convection Schemes Using Idealized Tests\" submitted to the Journal of Advances in Modeling Earth Systems (JAMES).","lang":"eng"}],"_id":"14991","main_file_link":[{"open_access":"1","url":"https://doi.org/10.5281/zenodo.7757041"}],"date_published":"2023-06-23T00:00:00Z","date_updated":"2025-09-09T13:35:40Z","oa_version":"Published Version","ddc":["550"],"year":"2023","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","related_material":{"record":[{"status":"public","id":"14654","relation":"used_in_publication"}]},"publisher":"Zenodo","month":"06","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"has_accepted_license":"1","date_created":"2024-02-14T14:37:57Z","day":"23","status":"public","type":"research_data_reference","article_processing_charge":"No","oa":1,"corr_author":"1","citation":{"ieee":"Y.-L. Hwong, M. Colin, P. Aglas, C. J. Muller, and S. C. Sherwood, “Data-assessing memory in convection schemes using idealized tests.” Zenodo, 2023.","mla":"Hwong, Yi-Ling, et al. <i>Data-Assessing Memory in Convection Schemes Using Idealized Tests</i>. Zenodo, 2023, doi:<a href=\"https://doi.org/10.5281/ZENODO.7757041\">10.5281/ZENODO.7757041</a>.","ista":"Hwong Y-L, Colin M, Aglas P, Muller CJ, Sherwood SC. 2023. Data-assessing memory in convection schemes using idealized tests, Zenodo, <a href=\"https://doi.org/10.5281/ZENODO.7757041\">10.5281/ZENODO.7757041</a>.","apa":"Hwong, Y.-L., Colin, M., Aglas, P., Muller, C. J., &#38; Sherwood, S. C. (2023). Data-assessing memory in convection schemes using idealized tests. Zenodo. <a href=\"https://doi.org/10.5281/ZENODO.7757041\">https://doi.org/10.5281/ZENODO.7757041</a>","chicago":"Hwong, Yi-Ling, Maxime Colin, Philipp Aglas, Caroline J Muller, and Steven C. Sherwood. “Data-Assessing Memory in Convection Schemes Using Idealized Tests.” Zenodo, 2023. <a href=\"https://doi.org/10.5281/ZENODO.7757041\">https://doi.org/10.5281/ZENODO.7757041</a>.","short":"Y.-L. Hwong, M. Colin, P. Aglas, C.J. Muller, S.C. Sherwood, (2023).","ama":"Hwong Y-L, Colin M, Aglas P, Muller CJ, Sherwood SC. Data-assessing memory in convection schemes using idealized tests. 2023. doi:<a href=\"https://doi.org/10.5281/ZENODO.7757041\">10.5281/ZENODO.7757041</a>"},"project":[{"call_identifier":"H2020","grant_number":"101034413","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c","name":"IST-BRIDGE: International postdoctoral program"}],"department":[{"_id":"CaMu"}],"ec_funded":1,"title":"Data-assessing memory in convection schemes using idealized tests","author":[{"full_name":"Hwong, Yi-Ling","last_name":"Hwong","orcid":"0000-0001-9281-3479","first_name":"Yi-Ling","id":"1217aa61-4dd1-11ec-9ac3-f2ba3f17ee22"},{"full_name":"Colin, Maxime","last_name":"Colin","first_name":"Maxime"},{"first_name":"Philipp","id":"02eace56-97fc-11ee-b81a-f0939ca85a77","full_name":"Aglas, Philipp","last_name":"Aglas"},{"full_name":"Muller, Caroline J","last_name":"Muller","id":"f978ccb0-3f7f-11eb-b193-b0e2bd13182b","orcid":"0000-0001-5836-5350","first_name":"Caroline J"},{"first_name":"Steven C.","last_name":"Sherwood","full_name":"Sherwood, Steven C."}]},{"day":"19","oa":1,"article_processing_charge":"No","type":"book_chapter","citation":{"chicago":"Lewin, Mathieu, Elliott H. Lieb, and Robert Seiringer. “Universal Functionals in Density Functional Theory.” In <i>Density Functional Theory</i>, edited by Eric Cances and Gero Friesecke, 1st ed., 115–82. MAMOMO. Springer, 2023. <a href=\"https://doi.org/10.1007/978-3-031-22340-2_3\">https://doi.org/10.1007/978-3-031-22340-2_3</a>.","short":"M. Lewin, E.H. Lieb, R. Seiringer, in:, E. Cances, G. Friesecke (Eds.), Density Functional Theory, 1st ed., Springer, 2023, pp. 115–182.","ama":"Lewin M, Lieb EH, Seiringer R. Universal Functionals in Density Functional Theory. In: Cances E, Friesecke G, eds. <i>Density Functional Theory</i>. 1st ed. MAMOMO. Springer; 2023:115-182. doi:<a href=\"https://doi.org/10.1007/978-3-031-22340-2_3\">10.1007/978-3-031-22340-2_3</a>","ieee":"M. Lewin, E. H. Lieb, and R. Seiringer, “Universal Functionals in Density Functional Theory,” in <i>Density Functional Theory</i>, 1st ed., E. Cances and G. Friesecke, Eds. Springer, 2023, pp. 115–182.","mla":"Lewin, Mathieu, et al. “Universal Functionals in Density Functional Theory.” <i>Density Functional Theory</i>, edited by Eric Cances and Gero Friesecke, 1st ed., Springer, 2023, pp. 115–82, doi:<a href=\"https://doi.org/10.1007/978-3-031-22340-2_3\">10.1007/978-3-031-22340-2_3</a>.","ista":"Lewin M, Lieb EH, Seiringer R. 2023.Universal Functionals in Density Functional Theory. In: Density Functional Theory. Mathematics and Molecular Modeling, , 115–182.","apa":"Lewin, M., Lieb, E. H., &#38; Seiringer, R. (2023). Universal Functionals in Density Functional Theory. In E. Cances &#38; G. Friesecke (Eds.), <i>Density Functional Theory</i> (1st ed., pp. 115–182). Springer. <a href=\"https://doi.org/10.1007/978-3-031-22340-2_3\">https://doi.org/10.1007/978-3-031-22340-2_3</a>"},"department":[{"_id":"RoSe"}],"external_id":{"arxiv":["1912.10424"]},"edition":"1","author":[{"full_name":"Lewin, Mathieu","last_name":"Lewin","first_name":"Mathieu"},{"full_name":"Lieb, Elliott H.","last_name":"Lieb","first_name":"Elliott H."},{"first_name":"Robert","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6781-0521","full_name":"Seiringer, Robert","last_name":"Seiringer"}],"doi":"10.1007/978-3-031-22340-2_3","publication_status":"published","abstract":[{"lang":"eng","text":"In this chapter we first review the Levy–Lieb functional, which gives the lowest kinetic and interaction energy that can be reached with all possible quantum states having a given density. We discuss two possible convex generalizations of this functional, corresponding to using mixed canonical and grand-canonical states, respectively. We present some recent works about the local density approximation, in which the functionals get replaced by purely local functionals constructed using the uniform electron gas energy per unit volume. We then review the known upper and lower bounds on the Levy–Lieb functionals. We start with the kinetic energy alone, then turn to the classical interaction alone, before we are able to put everything together. A later section is devoted to the Hohenberg–Kohn theorem and the role of many-body unique continuation in its proof."}],"publication":"Density Functional Theory","oa_version":"Preprint","publication_identifier":{"eisbn":["9783031223402"],"isbn":["9783031223396"],"issn":["3005-0286"]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"Springer","series_title":"MAMOMO","date_created":"2024-02-14T14:44:33Z","status":"public","page":"115-182","arxiv":1,"title":"Universal Functionals in Density Functional Theory","alternative_title":["Mathematics and Molecular Modeling"],"date_published":"2023-07-19T00:00:00Z","_id":"14992","main_file_link":[{"url":"https://doi.org/10.48550/arXiv.1912.10424","open_access":"1"}],"editor":[{"first_name":"Eric","last_name":"Cances","full_name":"Cances, Eric"},{"full_name":"Friesecke, Gero","last_name":"Friesecke","first_name":"Gero"}],"date_updated":"2024-02-20T08:33:06Z","language":[{"iso":"eng"}],"quality_controlled":"1","year":"2023","month":"07"},{"date_created":"2024-02-14T15:11:48Z","month":"03","publisher":"OpenReview","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","conference":{"location":"Kigali, Rwanda","name":"ICLR: International Conference on Learning Representations","start_date":"2023-05-05","end_date":"2023-05-05"},"ddc":["000"],"year":"2023","oa_version":"Published Version","quality_controlled":"1","date_updated":"2026-06-18T17:42:25Z","language":[{"iso":"eng"}],"date_published":"2023-03-02T00:00:00Z","publication_status":"published","_id":"14993","publication":"1st Workshop on Machine Learning & Global Health","main_file_link":[{"open_access":"1","url":"https://openreview.net/forum?id=jHY_G91R880"}],"abstract":[{"lang":"eng","text":"Traditional top-down approaches for global health have historically failed to achieve social progress (Hoffman et al., 2015; Hoffman & Røttingen, 2015). Recently, however, a more holistic, multi-level approach termed One Health (OH) (Osterhaus et al., 2020) is being adopted. Several sets of challenges have been identified for the implementation of OH (dos S. Ribeiro et al., 2019), including policy and funding, education and training, and multi-actor, multi-domain, and multi-level collaborations. These exist despite the increasing accessibility to\r\nknowledge and digital collaborative research tools through the internet. To address some of these challenges, we propose a general framework for grassroots community-based means of participatory research. Additionally, we present a specific roadmap to create a Machine Learning for Global Health community in Africa. The proposed framework aims to enable any small group of individuals with scarce resources to build and sustain an online community within approximately two years. We provide a discussion on the potential impact of the proposed framework for global health research collaborations."}],"author":[{"full_name":"Currin, Christopher","last_name":"Currin","id":"e8321fc5-3091-11eb-8a53-83f309a11ac9","orcid":"0000-0002-4809-5059","first_name":"Christopher"},{"last_name":"Asiedu ","full_name":"Asiedu , Mercy Nyamewaa","first_name":"Mercy Nyamewaa"},{"first_name":"Chris","full_name":"Fourie, Chris","last_name":"Fourie"},{"first_name":"Benjamin","last_name":"Rosman","full_name":"Rosman, Benjamin"},{"first_name":"Houcemeddine","last_name":"Turki","full_name":"Turki, Houcemeddine"},{"last_name":"Lambebo Tonja","full_name":"Lambebo Tonja, Atnafu","first_name":"Atnafu"},{"full_name":"Abbott, Jade","last_name":"Abbott","first_name":"Jade"},{"first_name":"Marvellous","full_name":"Ajala, Marvellous","last_name":"Ajala"},{"first_name":"Sadiq Adewale","last_name":"Adedayo","full_name":"Adedayo, Sadiq Adewale"},{"first_name":"Chris Chinenye","full_name":"Emezue, Chris Chinenye","last_name":"Emezue"},{"first_name":"Daphne","full_name":"Machangara, Daphne","last_name":"Machangara"}],"title":"A framework for grassroots research collaboration in machine learning and global health","department":[{"_id":"TiVo"}],"acknowledgement":"Houcemeddine Turki’s contributions to this final output have been funded through the Adapting\r\nWikidata to support clinical practice using Data Science, Semantic Web and Machine Learning\r\nproject, which is part of the Wikimedia Research Fund maintained by the Wikimedia Foundation in San Francisco, California, United States of America.","citation":{"short":"C. Currin, M.N. Asiedu , C. Fourie, B. Rosman, H. Turki, A. Lambebo Tonja, J. Abbott, M. Ajala, S.A. Adedayo, C.C. Emezue, D. Machangara, in:, 1st Workshop on Machine Learning &#38; Global Health, OpenReview, 2023.","ama":"Currin C, Asiedu  MN, Fourie C, et al. A framework for grassroots research collaboration in machine learning and global health. In: <i>1st Workshop on Machine Learning &#38; Global Health</i>. OpenReview; 2023.","chicago":"Currin, Christopher, Mercy Nyamewaa Asiedu , Chris Fourie, Benjamin Rosman, Houcemeddine Turki, Atnafu Lambebo Tonja, Jade Abbott, et al. “A Framework for Grassroots Research Collaboration in Machine Learning and Global Health.” In <i>1st Workshop on Machine Learning &#38; Global Health</i>. OpenReview, 2023.","mla":"Currin, Christopher, et al. “A Framework for Grassroots Research Collaboration in Machine Learning and Global Health.” <i>1st Workshop on Machine Learning &#38; Global Health</i>, OpenReview, 2023.","ista":"Currin C, Asiedu  MN, Fourie C, Rosman B, Turki H, Lambebo Tonja A, Abbott J, Ajala M, Adedayo SA, Emezue CC, Machangara D. 2023. A framework for grassroots research collaboration in machine learning and global health. 1st Workshop on Machine Learning &#38; Global Health. ICLR: International Conference on Learning Representations.","apa":"Currin, C., Asiedu , M. N., Fourie, C., Rosman, B., Turki, H., Lambebo Tonja, A., … Machangara, D. (2023). A framework for grassroots research collaboration in machine learning and global health. In <i>1st Workshop on Machine Learning &#38; Global Health</i>. Kigali, Rwanda: OpenReview.","ieee":"C. Currin <i>et al.</i>, “A framework for grassroots research collaboration in machine learning and global health,” in <i>1st Workshop on Machine Learning &#38; Global Health</i>, Kigali, Rwanda, 2023."},"oa":1,"article_processing_charge":"No","type":"conference","status":"public","day":"02"},{"status":"public","day":"28","corr_author":"1","citation":{"ista":"Majumdar R, Mallik K, Rychlicki M, Schmuck A-K, Soudjani S. 2023. A flexible toolchain for symbolic rabin games under fair and stochastic uncertainties, Zenodo, <a href=\"https://doi.org/10.5281/ZENODO.7877790\">10.5281/ZENODO.7877790</a>.","apa":"Majumdar, R., Mallik, K., Rychlicki, M., Schmuck, A.-K., &#38; Soudjani, S. (2023). A flexible toolchain for symbolic rabin games under fair and stochastic uncertainties. Zenodo. <a href=\"https://doi.org/10.5281/ZENODO.7877790\">https://doi.org/10.5281/ZENODO.7877790</a>","mla":"Majumdar, Rupak, et al. <i>A Flexible Toolchain for Symbolic Rabin Games under Fair and Stochastic Uncertainties</i>. Zenodo, 2023, doi:<a href=\"https://doi.org/10.5281/ZENODO.7877790\">10.5281/ZENODO.7877790</a>.","ieee":"R. Majumdar, K. Mallik, M. Rychlicki, A.-K. Schmuck, and S. Soudjani, “A flexible toolchain for symbolic rabin games under fair and stochastic uncertainties.” Zenodo, 2023.","ama":"Majumdar R, Mallik K, Rychlicki M, Schmuck A-K, Soudjani S. A flexible toolchain for symbolic rabin games under fair and stochastic uncertainties. 2023. doi:<a href=\"https://doi.org/10.5281/ZENODO.7877790\">10.5281/ZENODO.7877790</a>","short":"R. Majumdar, K. Mallik, M. Rychlicki, A.-K. Schmuck, S. Soudjani, (2023).","chicago":"Majumdar, Rupak, Kaushik Mallik, Mateusz Rychlicki, Anne-Kathrin Schmuck, and Sadegh Soudjani. “A Flexible Toolchain for Symbolic Rabin Games under Fair and Stochastic Uncertainties.” Zenodo, 2023. <a href=\"https://doi.org/10.5281/ZENODO.7877790\">https://doi.org/10.5281/ZENODO.7877790</a>."},"article_processing_charge":"No","type":"research_data_reference","oa":1,"department":[{"_id":"ToHe"}],"author":[{"last_name":"Majumdar","full_name":"Majumdar, Rupak","first_name":"Rupak"},{"last_name":"Mallik","full_name":"Mallik, Kaushik","orcid":"0000-0001-9864-7475","first_name":"Kaushik","id":"0834ff3c-6d72-11ec-94e0-b5b0a4fb8598"},{"first_name":"Mateusz","full_name":"Rychlicki, Mateusz","last_name":"Rychlicki"},{"first_name":"Anne-Kathrin","full_name":"Schmuck, Anne-Kathrin","last_name":"Schmuck"},{"full_name":"Soudjani, Sadegh","last_name":"Soudjani","first_name":"Sadegh"}],"title":"A flexible toolchain for symbolic rabin games under fair and stochastic uncertainties","_id":"14994","abstract":[{"text":"This resource contains the artifacts for reproducing the experimental results presented in the paper titled \"A Flexible Toolchain for Symbolic Rabin Games under Fair and Stochastic Uncertainties\" that has been submitted in CAV 2023.","lang":"eng"}],"main_file_link":[{"url":"https://doi.org/10.5281/zenodo.7877790","open_access":"1"}],"date_published":"2023-04-28T00:00:00Z","doi":"10.5281/ZENODO.7877790","oa_version":"Published Version","date_updated":"2025-09-09T14:16:48Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","ddc":["000"],"year":"2023","month":"04","date_created":"2024-02-14T15:13:00Z","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"has_accepted_license":"1","related_material":{"record":[{"status":"public","relation":"used_in_publication","id":"14758"}]},"publisher":"Zenodo"},{"department":[{"_id":"DaAl"}],"title":"Lincheck: A practical framework for testing concurrent data structures on JVM","author":[{"last_name":"Koval","full_name":"Koval, Nikita","id":"2F4DB10C-F248-11E8-B48F-1D18A9856A87","first_name":"Nikita"},{"full_name":"Fedorov, Alexander","last_name":"Fedorov","first_name":"Alexander","id":"2e711909-896a-11ed-bdf8-eb0f5a2984c6"},{"first_name":"Maria","full_name":"Sokolova, Maria","last_name":"Sokolova"},{"full_name":"Tsitelov, Dmitry","last_name":"Tsitelov","first_name":"Dmitry"},{"first_name":"Dan-Adrian","id":"4A899BFC-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-3650-940X","full_name":"Alistarh, Dan-Adrian","last_name":"Alistarh"}],"day":"28","status":"public","type":"research_data_reference","article_processing_charge":"No","oa":1,"citation":{"short":"N. Koval, A. Fedorov, M. Sokolova, D. Tsitelov, D.-A. Alistarh, (2023).","ama":"Koval N, Fedorov A, Sokolova M, Tsitelov D, Alistarh D-A. Lincheck: A practical framework for testing concurrent data structures on JVM. 2023. doi:<a href=\"https://doi.org/10.5281/ZENODO.7877757\">10.5281/ZENODO.7877757</a>","chicago":"Koval, Nikita, Alexander Fedorov, Maria Sokolova, Dmitry Tsitelov, and Dan-Adrian Alistarh. “Lincheck: A Practical Framework for Testing Concurrent Data Structures on JVM.” Zenodo, 2023. <a href=\"https://doi.org/10.5281/ZENODO.7877757\">https://doi.org/10.5281/ZENODO.7877757</a>.","mla":"Koval, Nikita, et al. <i>Lincheck: A Practical Framework for Testing Concurrent Data Structures on JVM</i>. Zenodo, 2023, doi:<a href=\"https://doi.org/10.5281/ZENODO.7877757\">10.5281/ZENODO.7877757</a>.","ista":"Koval N, Fedorov A, Sokolova M, Tsitelov D, Alistarh D-A. 2023. Lincheck: A practical framework for testing concurrent data structures on JVM, Zenodo, <a href=\"https://doi.org/10.5281/ZENODO.7877757\">10.5281/ZENODO.7877757</a>.","apa":"Koval, N., Fedorov, A., Sokolova, M., Tsitelov, D., &#38; Alistarh, D.-A. (2023). Lincheck: A practical framework for testing concurrent data structures on JVM. Zenodo. <a href=\"https://doi.org/10.5281/ZENODO.7877757\">https://doi.org/10.5281/ZENODO.7877757</a>","ieee":"N. Koval, A. Fedorov, M. Sokolova, D. Tsitelov, and D.-A. Alistarh, “Lincheck: A practical framework for testing concurrent data structures on JVM.” Zenodo, 2023."},"ddc":["000"],"year":"2023","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"Zenodo","related_material":{"record":[{"status":"public","id":"14260","relation":"used_in_publication"}]},"month":"04","date_created":"2024-02-14T15:14:13Z","doi":"10.5281/ZENODO.7877757","main_file_link":[{"open_access":"1","url":"https://doi.org/10.5281/zenodo.7877757"}],"_id":"14995","abstract":[{"text":"Lincheck is a new practical and user-friendly framework for testing concurrent data structures on the Java Virtual Machine (JVM). It provides a simple and declarative way to write concurrent tests. Instead of describing how to perform the test, users specify what to test by declaring all the operations to examine; the framework automatically handles the rest. As a result, tests written with Lincheck are concise and easy to understand. \r\nThe artifact presents a collection of Lincheck tests that discover new bugs in popular libraries and implementations from the concurrency literature -- they are listed in Table 1, Section 3. To evaluate the performance of Lincheck analysis, the collection of tests also includes those which check correct data structures and, thus, always succeed. Similarly to Table 2, Section 3, the experiments demonstrate the reasonable time to perform a test. Finally, Lincheck provides user-friendly output with an easy-to-follow trace to reproduce a detected error, significantly simplifying further investigation.","lang":"eng"}],"date_published":"2023-04-28T00:00:00Z","date_updated":"2025-09-09T12:51:51Z","oa_version":"Published Version"},{"title":"Compositional policy learning in stochastic control systems with formal guarantees","status":"public","corr_author":"1","arxiv":1,"year":"2023","ddc":["000"],"conference":{"start_date":"2023-12-10","name":"NeurIPS: Neural Information Processing Systems","end_date":"2023-12-16","location":"New Orleans, LO, United States"},"month":"12","has_accepted_license":"1","_id":"15023","date_published":"2023-12-15T00:00:00Z","alternative_title":["NeurIPS"],"quality_controlled":"1","date_updated":"2025-04-14T07:52:48Z","language":[{"iso":"eng"}],"ec_funded":1,"project":[{"name":"Formal Methods for Stochastic Models: Algorithms and Applications","grant_number":"863818","_id":"0599E47C-7A3F-11EA-A408-12923DDC885E","call_identifier":"H2020"},{"call_identifier":"H2020","name":"Vigilant Algorithmic Monitoring of Software","grant_number":"101020093","_id":"62781420-2b32-11ec-9570-8d9b63373d4d"}],"department":[{"_id":"ToHe"},{"_id":"KrCh"}],"acknowledgement":"This work was supported in part by the ERC-2020-AdG 101020093 (VAMOS) and the ERC-2020-\r\nCoG 863818 (FoRM-SMArt).","author":[{"id":"294AA7A6-F248-11E8-B48F-1D18A9856A87","first_name":"Dorde","orcid":"0000-0002-4681-1699","full_name":"Zikelic, Dorde","last_name":"Zikelic"},{"full_name":"Lechner, Mathias","last_name":"Lechner","id":"3DC22916-F248-11E8-B48F-1D18A9856A87","first_name":"Mathias"},{"id":"a235593c-d7fa-11eb-a0c5-b22ca3c66ee6","first_name":"Abhinav","full_name":"Verma, Abhinav","last_name":"Verma"},{"id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4561-241X","first_name":"Krishnendu","last_name":"Chatterjee","full_name":"Chatterjee, Krishnendu"},{"full_name":"Henzinger, Thomas A","last_name":"Henzinger","first_name":"Thomas A","id":"40876CD8-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2985-7724"}],"external_id":{"arxiv":["2312.01456"]},"day":"15","file_date_updated":"2024-07-22T11:45:17Z","citation":{"chicago":"Zikelic, Dorde, Mathias Lechner, Abhinav Verma, Krishnendu Chatterjee, and Thomas A Henzinger. “Compositional Policy Learning in Stochastic Control Systems with Formal Guarantees.” In <i>37th Conference on Neural Information Processing Systems</i>, 2023.","ama":"Zikelic D, Lechner M, Verma A, Chatterjee K, Henzinger TA. Compositional policy learning in stochastic control systems with formal guarantees. In: <i>37th Conference on Neural Information Processing Systems</i>. ; 2023.","short":"D. Zikelic, M. Lechner, A. Verma, K. Chatterjee, T.A. Henzinger, in:, 37th Conference on Neural Information Processing Systems, 2023.","ieee":"D. Zikelic, M. Lechner, A. Verma, K. Chatterjee, and T. A. Henzinger, “Compositional policy learning in stochastic control systems with formal guarantees,” in <i>37th Conference on Neural Information Processing Systems</i>, New Orleans, LO, United States, 2023.","mla":"Zikelic, Dorde, et al. “Compositional Policy Learning in Stochastic Control Systems with Formal Guarantees.” <i>37th Conference on Neural Information Processing Systems</i>, 2023.","apa":"Zikelic, D., Lechner, M., Verma, A., Chatterjee, K., &#38; Henzinger, T. A. (2023). Compositional policy learning in stochastic control systems with formal guarantees. In <i>37th Conference on Neural Information Processing Systems</i>. New Orleans, LO, United States.","ista":"Zikelic D, Lechner M, Verma A, Chatterjee K, Henzinger TA. 2023. Compositional policy learning in stochastic control systems with formal guarantees. 37th Conference on Neural Information Processing Systems. NeurIPS: Neural Information Processing Systems, NeurIPS, ."},"article_processing_charge":"No","type":"conference","oa":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_created":"2024-02-25T09:23:24Z","abstract":[{"lang":"eng","text":"Reinforcement learning has shown promising results in learning neural network policies for complicated control tasks. However, the lack of formal guarantees about the behavior of such policies remains an impediment to their deployment. We propose a novel method for learning a composition of neural network policies in stochastic environments, along with a formal certificate which guarantees that a specification over the policy's behavior is satisfied with the desired probability. Unlike prior work on verifiable RL, our approach leverages the compositional nature of logical specifications provided in SpectRL, to learn over graphs of probabilistic reach-avoid specifications. The formal guarantees are provided by learning neural network policies together with reach-avoid supermartingales (RASM) for the graph’s sub-tasks and then composing them into a global policy. We also derive a tighter lower bound compared to previous work on the probability of reach-avoidance implied by a RASM, which is required to find a compositional policy with an acceptable probabilistic threshold for complex tasks with multiple edge policies. We implement a prototype of our approach and evaluate it on a Stochastic Nine Rooms environment."}],"file":[{"file_name":"2023_NeurIPS_Zikelic.pdf","success":1,"checksum":"739c6d72506b778302d4e708723bf12c","date_updated":"2024-07-22T11:45:17Z","file_id":"17309","creator":"dernst","access_level":"open_access","content_type":"application/pdf","relation":"main_file","date_created":"2024-07-22T11:45:17Z","file_size":562008}],"publication":"37th Conference on Neural Information Processing Systems","publication_status":"published","oa_version":"Published Version"},{"date_updated":"2025-09-04T12:03:11Z","oa_version":"Published Version","date_published":"2023-12-13T00:00:00Z","abstract":[{"lang":"eng","text":"This data repository underpins the paper, published in PNAS (doi pending) and bioarxiv (doi: https://doi.org/10.1101/2023.07.05.547777)."}],"_id":"15027","main_file_link":[{"open_access":"1","url":"https://figshare.com/s/85798bba4ebc68d822ed"}],"related_material":{"record":[{"status":"public","id":"15001","relation":"used_in_publication"}]},"publisher":"Figshare","tmp":{"legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","short":"CC0 (1.0)","name":"Creative Commons Public Domain Dedication (CC0 1.0)","image":"/images/cc_0.png"},"date_created":"2024-02-26T08:37:57Z","has_accepted_license":"1","month":"12","ddc":["570"],"year":"2023","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa":1,"type":"research_data_reference","article_processing_charge":"No","citation":{"ieee":"S. Curk, “aggregation_data.” Figshare, 2023.","mla":"Curk, Samo. <i>Aggregation_data</i>. Figshare, 2023.","apa":"Curk, S. (2023). aggregation_data. Figshare.","ista":"Curk S. 2023. aggregation_data, Figshare.","chicago":"Curk, Samo. “Aggregation_data.” Figshare, 2023.","short":"S. Curk, (2023).","ama":"Curk S. aggregation_data. 2023."},"corr_author":"1","OA_place":"publisher","day":"13","status":"public","title":"aggregation_data","author":[{"id":"031eff0d-d481-11ee-8508-cd12a7a86e5b","orcid":"0000-0001-6160-9766","first_name":"Samo","last_name":"Curk","full_name":"Curk, Samo"}],"OA_type":"gold","department":[{"_id":"AnSa"}]},{"article_processing_charge":"No","type":"research_data_reference","oa":1,"corr_author":"1","citation":{"chicago":"Chalupa, Marek, and Thomas A Henzinger. “Monitoring Hyperproperties with Prefix Transducers.” Zenodo, 2023. <a href=\"https://doi.org/10.5281/ZENODO.8191723\">https://doi.org/10.5281/ZENODO.8191723</a>.","short":"M. Chalupa, T.A. Henzinger, (2023).","ama":"Chalupa M, Henzinger TA. Monitoring hyperproperties with prefix transducers. 2023. doi:<a href=\"https://doi.org/10.5281/ZENODO.8191723\">10.5281/ZENODO.8191723</a>","ieee":"M. Chalupa and T. A. Henzinger, “Monitoring hyperproperties with prefix transducers.” Zenodo, 2023.","mla":"Chalupa, Marek, and Thomas A. Henzinger. <i>Monitoring Hyperproperties with Prefix Transducers</i>. Zenodo, 2023, doi:<a href=\"https://doi.org/10.5281/ZENODO.8191723\">10.5281/ZENODO.8191723</a>.","apa":"Chalupa, M., &#38; Henzinger, T. A. (2023). Monitoring hyperproperties with prefix transducers. Zenodo. <a href=\"https://doi.org/10.5281/ZENODO.8191723\">https://doi.org/10.5281/ZENODO.8191723</a>","ista":"Chalupa M, Henzinger TA. 2023. Monitoring hyperproperties with prefix transducers, Zenodo, <a href=\"https://doi.org/10.5281/ZENODO.8191723\">10.5281/ZENODO.8191723</a>."},"day":"28","status":"public","title":"Monitoring hyperproperties with prefix transducers","author":[{"last_name":"Chalupa","full_name":"Chalupa, Marek","first_name":"Marek","id":"87e34708-d6c6-11ec-9f5b-9391e7be2463"},{"first_name":"Thomas A","id":"40876CD8-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2985-7724","last_name":"Henzinger","full_name":"Henzinger, Thomas A"}],"project":[{"name":"Vigilant Algorithmic Monitoring of Software","_id":"62781420-2b32-11ec-9570-8d9b63373d4d","grant_number":"101020093","call_identifier":"H2020"}],"department":[{"_id":"ToHe"}],"ec_funded":1,"date_updated":"2025-04-14T09:42:55Z","oa_version":"Published Version","doi":"10.5281/ZENODO.8191723","main_file_link":[{"open_access":"1","url":"https://doi.org/10.5281/zenodo.8191722"}],"_id":"15035","abstract":[{"lang":"eng","text":"This artifact aims to reproduce experiments from the paper Monitoring Hyperproperties With Prefix Transducers accepted at RV'23, and give further pointers to implementation of prefix transducers.\r\nIt has two parts: a pre-compiled docker image and sources that one can use to compile (locally or in docker) the software and run the experiments."}],"date_published":"2023-07-28T00:00:00Z","related_material":{"record":[{"status":"public","relation":"used_in_publication","id":"14076"}]},"publisher":"Zenodo","month":"07","date_created":"2024-02-28T07:34:34Z","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"has_accepted_license":"1","ddc":["000"],"year":"2023","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"OA_place":"repository","day":"10","status":"public","oa":1,"type":"preprint","article_processing_charge":"No","citation":{"chicago":"Prach, Bernd, and Christoph Lampert. “1-Lipschitz Neural Networks Are More Expressive with N-Activations.” <i>ArXiv</i>, n.d. <a href=\"https://doi.org/10.48550/ARXIV.2311.06103\">https://doi.org/10.48550/ARXIV.2311.06103</a>.","short":"B. Prach, C. Lampert, ArXiv (n.d.).","ama":"Prach B, Lampert C. 1-Lipschitz neural networks are more expressive with N-activations. <i>arXiv</i>. doi:<a href=\"https://doi.org/10.48550/ARXIV.2311.06103\">10.48550/ARXIV.2311.06103</a>","ieee":"B. Prach and C. Lampert, “1-Lipschitz neural networks are more expressive with N-activations,” <i>arXiv</i>. .","mla":"Prach, Bernd, and Christoph Lampert. “1-Lipschitz Neural Networks Are More Expressive with N-Activations.” <i>ArXiv</i>, 2311.06103, doi:<a href=\"https://doi.org/10.48550/ARXIV.2311.06103\">10.48550/ARXIV.2311.06103</a>.","ista":"Prach B, Lampert C. 1-Lipschitz neural networks are more expressive with N-activations. arXiv, 2311.06103.","apa":"Prach, B., &#38; Lampert, C. (n.d.). 1-Lipschitz neural networks are more expressive with N-activations. <i>arXiv</i>. <a href=\"https://doi.org/10.48550/ARXIV.2311.06103\">https://doi.org/10.48550/ARXIV.2311.06103</a>"},"arxiv":1,"corr_author":"1","department":[{"_id":"GradSch"},{"_id":"ChLa"}],"external_id":{"arxiv":["2311.06103"]},"title":"1-Lipschitz neural networks are more expressive with N-activations","article_number":"2311.06103","author":[{"id":"2D561D42-C427-11E9-89B4-9C1AE6697425","first_name":"Bernd","full_name":"Prach, Bernd","last_name":"Prach"},{"id":"40C20FD2-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8622-7887","first_name":"Christoph","last_name":"Lampert","full_name":"Lampert, Christoph"}],"doi":"10.48550/ARXIV.2311.06103","date_published":"2023-11-10T00:00:00Z","publication_status":"draft","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2311.06103"}],"_id":"15039","abstract":[{"lang":"eng","text":"A crucial property for achieving secure, trustworthy and interpretable deep learning systems is their robustness: small changes to a system's inputs should not result in large changes to its outputs. Mathematically, this means one strives for networks with a small Lipschitz constant. Several recent works have focused on how to construct such Lipschitz networks, typically by imposing constraints on the weight matrices. In this work, we study an orthogonal aspect, namely the role of the activation function. We show that commonly used activation functions, such as MaxMin, as well as all piece-wise linear ones with two segments unnecessarily restrict the class of representable functions, even in the simplest one-dimensional setting. We furthermore introduce the new N-activation function that is provably more expressive than currently popular activation functions. We provide code at this https URL."}],"publication":"arXiv","date_updated":"2026-04-07T11:49:51Z","language":[{"iso":"eng"}],"oa_version":"Preprint","year":"2023","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","related_material":{"record":[{"id":"19759","relation":"dissertation_contains","status":"public"}]},"tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"date_created":"2024-02-28T17:59:32Z","month":"11"},{"article_type":"original","publisher":"American Association for the Advancement of Science","date_created":"2024-03-05T09:40:28Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_identifier":{"issn":["0036-8075"],"eissn":["1095-9203"]},"pmid":1,"oa_version":"None","doi":"10.1126/science.ade4970","extern":"1","publication_status":"published","publication":"Science","abstract":[{"lang":"eng","text":"The hydrogen-rich outer layers of massive stars can be removed by interactions with a binary companion. Theoretical models predict that this stripping produces a population of hot helium stars of ~2 to 8 solar masses (M☉), however, only one such system has been identified thus far. We used ultraviolet photometry to identify potential stripped helium stars then investigated 25 of them using optical spectroscopy. We identified stars with high temperatures (~60,000 to 100,000 kelvin), high surface gravities, and hydrogen-depleted surfaces; 16 stars also showed binary motion. These properties match expectations for stars with initial masses of 8 to 25 M☉ that were stripped by binary interaction. Their masses fall in the gap between subdwarf helium stars and Wolf-Rayet stars. We propose that these stars could be progenitors of stripped-envelope supernovae."}],"external_id":{"arxiv":["2307.00061"],"pmid":["38096420"]},"scopus_import":"1","author":[{"first_name":"M. R.","full_name":"Drout, M. R.","last_name":"Drout"},{"first_name":"Ylva Louise Linsdotter","orcid":"0000-0002-6960-6911","id":"d0648d0c-0f64-11ee-a2e0-dd0faa2e4f7d","last_name":"Götberg","full_name":"Götberg, Ylva Louise Linsdotter"},{"last_name":"Ludwig","full_name":"Ludwig, B. A.","first_name":"B. A."},{"first_name":"J. H.","full_name":"Groh, J. H.","last_name":"Groh"},{"first_name":"S. E.","last_name":"de Mink","full_name":"de Mink, S. E."},{"full_name":"O’Grady, A. J. G.","last_name":"O’Grady","first_name":"A. J. G."},{"full_name":"Smith, N.","last_name":"Smith","first_name":"N."}],"issue":"6676","oa":1,"article_processing_charge":"No","type":"journal_article","citation":{"chicago":"Drout, M. R., Ylva Louise Linsdotter Götberg, B. A. Ludwig, J. H. Groh, S. E. de Mink, A. J. G. O’Grady, and N. Smith. “An Observed Population of Intermediate-Mass Helium Stars That Have Been Stripped in Binaries.” <i>Science</i>. American Association for the Advancement of Science, 2023. <a href=\"https://doi.org/10.1126/science.ade4970\">https://doi.org/10.1126/science.ade4970</a>.","short":"M.R. Drout, Y.L.L. Götberg, B.A. Ludwig, J.H. Groh, S.E. de Mink, A.J.G. O’Grady, N. Smith, Science 382 (2023) 1287–1291.","ama":"Drout MR, Götberg YLL, Ludwig BA, et al. An observed population of intermediate-mass helium stars that have been stripped in binaries. <i>Science</i>. 2023;382(6676):1287-1291. doi:<a href=\"https://doi.org/10.1126/science.ade4970\">10.1126/science.ade4970</a>","ieee":"M. R. Drout <i>et al.</i>, “An observed population of intermediate-mass helium stars that have been stripped in binaries,” <i>Science</i>, vol. 382, no. 6676. American Association for the Advancement of Science, pp. 1287–1291, 2023.","mla":"Drout, M. R., et al. “An Observed Population of Intermediate-Mass Helium Stars That Have Been Stripped in Binaries.” <i>Science</i>, vol. 382, no. 6676, American Association for the Advancement of Science, 2023, pp. 1287–91, doi:<a href=\"https://doi.org/10.1126/science.ade4970\">10.1126/science.ade4970</a>.","ista":"Drout MR, Götberg YLL, Ludwig BA, Groh JH, de Mink SE, O’Grady AJG, Smith N. 2023. An observed population of intermediate-mass helium stars that have been stripped in binaries. Science. 382(6676), 1287–1291.","apa":"Drout, M. R., Götberg, Y. L. L., Ludwig, B. A., Groh, J. H., de Mink, S. E., O’Grady, A. J. G., &#38; Smith, N. (2023). An observed population of intermediate-mass helium stars that have been stripped in binaries. <i>Science</i>. American Association for the Advancement of Science. <a href=\"https://doi.org/10.1126/science.ade4970\">https://doi.org/10.1126/science.ade4970</a>"},"keyword":["Stellar Astrophysics"],"day":"14","intvolume":"       382","related_material":{"link":[{"description":"News on ISTA Website","url":"https://ista.ac.at/en/news/reaching-for-the-invisible-stars/","relation":"press_release"}]},"month":"12","year":"2023","language":[{"iso":"eng"}],"date_updated":"2024-10-14T12:32:01Z","quality_controlled":"1","date_published":"2023-12-14T00:00:00Z","_id":"15085","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2307.00061"}],"title":"An observed population of intermediate-mass helium stars that have been stripped in binaries","volume":382,"page":"1287-1291","arxiv":1,"status":"public"},{"doi":"10.1016/j.molcel.2023.01.024","extern":"1","abstract":[{"text":"Type I CRISPR-Cas systems employ multi-subunit Cascade effector complexes to target foreign nucleic acids for destruction. Here, we present structures of D. vulgaris type I-C Cascade at various stages of double-stranded (ds)DNA target capture, revealing mechanisms that underpin PAM recognition and Cascade allosteric activation. We uncover an interesting mechanism of non-target strand (NTS) DNA stabilization via stacking interactions with the “belly” subunits, securing the NTS in place. This “molecular seatbelt” mechanism facilitates efficient R-loop formation and prevents dsDNA reannealing. Additionally, we provide structural insights into how two anti-CRISPR (Acr) proteins utilize distinct strategies to achieve a shared mechanism of type I-C Cascade inhibition by blocking PAM scanning. These observations form a structural basis for directional R-loop formation and reveal how different Acr proteins have converged upon common molecular mechanisms to efficiently shut down CRISPR immunity.","lang":"eng"}],"publication":"Molecular Cell","publication_status":"published","publication_identifier":{"issn":["1097-2765"]},"oa_version":"Published Version","pmid":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"Elsevier","article_type":"original","date_created":"2024-03-20T10:40:56Z","day":"02","keyword":["Cell Biology","Molecular Biology"],"intvolume":"        83","type":"journal_article","article_processing_charge":"Yes (in subscription journal)","oa":1,"citation":{"short":"R.E. O’Brien, J.P.K. Bravo, D. Ramos, G.N. Hibshman, J.T. Wright, D.W. Taylor, Molecular Cell 83 (2023) 746–758.e5.","ama":"O’Brien RE, Bravo JPK, Ramos D, Hibshman GN, Wright JT, Taylor DW. Structural snapshots of R-loop formation by a type I-C CRISPR Cascade. <i>Molecular Cell</i>. 2023;83(5):746-758.e5. doi:<a href=\"https://doi.org/10.1016/j.molcel.2023.01.024\">10.1016/j.molcel.2023.01.024</a>","chicago":"O’Brien, Roisin E., Jack Peter Kelly Bravo, Delisa Ramos, Grace N. Hibshman, Jacquelyn T. Wright, and David W. Taylor. “Structural Snapshots of R-Loop Formation by a Type I-C CRISPR Cascade.” <i>Molecular Cell</i>. Elsevier, 2023. <a href=\"https://doi.org/10.1016/j.molcel.2023.01.024\">https://doi.org/10.1016/j.molcel.2023.01.024</a>.","mla":"O’Brien, Roisin E., et al. “Structural Snapshots of R-Loop Formation by a Type I-C CRISPR Cascade.” <i>Molecular Cell</i>, vol. 83, no. 5, Elsevier, 2023, p. 746–758.e5, doi:<a href=\"https://doi.org/10.1016/j.molcel.2023.01.024\">10.1016/j.molcel.2023.01.024</a>.","ista":"O’Brien RE, Bravo JPK, Ramos D, Hibshman GN, Wright JT, Taylor DW. 2023. Structural snapshots of R-loop formation by a type I-C CRISPR Cascade. Molecular Cell. 83(5), 746–758.e5.","apa":"O’Brien, R. E., Bravo, J. P. K., Ramos, D., Hibshman, G. N., Wright, J. T., &#38; Taylor, D. W. (2023). Structural snapshots of R-loop formation by a type I-C CRISPR Cascade. <i>Molecular Cell</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.molcel.2023.01.024\">https://doi.org/10.1016/j.molcel.2023.01.024</a>","ieee":"R. E. O’Brien, J. P. K. Bravo, D. Ramos, G. N. Hibshman, J. T. Wright, and D. W. Taylor, “Structural snapshots of R-loop formation by a type I-C CRISPR Cascade,” <i>Molecular Cell</i>, vol. 83, no. 5. Elsevier, p. 746–758.e5, 2023."},"issue":"5","scopus_import":"1","external_id":{"pmid":["36805026"]},"author":[{"full_name":"O’Brien, Roisin E.","last_name":"O’Brien","first_name":"Roisin E."},{"orcid":"0000-0003-0456-0753","id":"96aecfa5-8931-11ee-af30-aa6a5d6eee0e","first_name":"Jack Peter Kelly","last_name":"Bravo","full_name":"Bravo, Jack Peter Kelly"},{"first_name":"Delisa","full_name":"Ramos, Delisa","last_name":"Ramos"},{"full_name":"Hibshman, Grace N.","last_name":"Hibshman","first_name":"Grace N."},{"first_name":"Jacquelyn T.","last_name":"Wright","full_name":"Wright, Jacquelyn T."},{"full_name":"Taylor, David W.","last_name":"Taylor","first_name":"David W."}],"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1016/j.molcel.2023.01.024"}],"_id":"15129","date_published":"2023-03-02T00:00:00Z","date_updated":"2024-06-04T06:33:54Z","language":[{"iso":"eng"}],"quality_controlled":"1","year":"2023","month":"03","status":"public","page":"746-758.e5","title":"Structural snapshots of R-loop formation by a type I-C CRISPR Cascade","volume":83},{"date_published":"2023-01-04T00:00:00Z","_id":"15130","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1038/s41586-022-05560-w"}],"quality_controlled":"1","language":[{"iso":"eng"}],"date_updated":"2024-06-04T06:30:59Z","year":"2023","month":"01","status":"public","page":"582-587","volume":613,"title":"RNA targeting unleashes indiscriminate nuclease activity of CRISPR–Cas12a2","publication_status":"published","abstract":[{"lang":"eng","text":"Cas12a2 is a CRISPR-associated nuclease that performs RNA-guided, sequence-nonspecific degradation of single-stranded RNA, single-stranded DNA and double-stranded DNA following recognition of a complementary RNA target, culminating in abortive infection<jats:sup>1</jats:sup>. Here we report structures of Cas12a2 in binary, ternary and quaternary complexes to reveal a complete activation pathway. Our structures reveal that Cas12a2 is autoinhibited until binding a cognate RNA target, which exposes the RuvC active site within a large, positively charged cleft. Double-stranded DNA substrates are captured through duplex distortion and local melting, stabilized by pairs of ‘aromatic clamp’ residues that are crucial for double-stranded DNA degradation and in vivo immune system function. Our work provides a structural basis for this mechanism of abortive infection to achieve population-level immunity, which can be leveraged to create rational mutants that degrade a spectrum of collateral substrates."}],"publication":"Nature","doi":"10.1038/s41586-022-05560-w","extern":"1","oa_version":"Published Version","publication_identifier":{"eissn":["1476-4687"],"issn":["0028-0836"]},"pmid":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_created":"2024-03-20T10:41:36Z","article_type":"original","publisher":"Springer Nature","intvolume":"       613","day":"04","citation":{"mla":"Bravo, Jack Peter Kelly, et al. “RNA Targeting Unleashes Indiscriminate Nuclease Activity of CRISPR–Cas12a2.” <i>Nature</i>, vol. 613, no. 7944, Springer Nature, 2023, pp. 582–87, doi:<a href=\"https://doi.org/10.1038/s41586-022-05560-w\">10.1038/s41586-022-05560-w</a>.","apa":"Bravo, J. P. K., Hallmark, T., Naegle, B., Beisel, C. L., Jackson, R. N., &#38; Taylor, D. W. (2023). RNA targeting unleashes indiscriminate nuclease activity of CRISPR–Cas12a2. <i>Nature</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41586-022-05560-w\">https://doi.org/10.1038/s41586-022-05560-w</a>","ista":"Bravo JPK, Hallmark T, Naegle B, Beisel CL, Jackson RN, Taylor DW. 2023. RNA targeting unleashes indiscriminate nuclease activity of CRISPR–Cas12a2. Nature. 613(7944), 582–587.","ieee":"J. P. K. Bravo, T. Hallmark, B. Naegle, C. L. Beisel, R. N. Jackson, and D. W. Taylor, “RNA targeting unleashes indiscriminate nuclease activity of CRISPR–Cas12a2,” <i>Nature</i>, vol. 613, no. 7944. Springer Nature, pp. 582–587, 2023.","short":"J.P.K. Bravo, T. Hallmark, B. Naegle, C.L. Beisel, R.N. Jackson, D.W. Taylor, Nature 613 (2023) 582–587.","ama":"Bravo JPK, Hallmark T, Naegle B, Beisel CL, Jackson RN, Taylor DW. RNA targeting unleashes indiscriminate nuclease activity of CRISPR–Cas12a2. <i>Nature</i>. 2023;613(7944):582-587. doi:<a href=\"https://doi.org/10.1038/s41586-022-05560-w\">10.1038/s41586-022-05560-w</a>","chicago":"Bravo, Jack Peter Kelly, Thomson Hallmark, Bronson Naegle, Chase L. Beisel, Ryan N. Jackson, and David W. Taylor. “RNA Targeting Unleashes Indiscriminate Nuclease Activity of CRISPR–Cas12a2.” <i>Nature</i>. Springer Nature, 2023. <a href=\"https://doi.org/10.1038/s41586-022-05560-w\">https://doi.org/10.1038/s41586-022-05560-w</a>."},"oa":1,"article_processing_charge":"Yes (in subscription journal)","type":"journal_article","issue":"7944","author":[{"id":"96aecfa5-8931-11ee-af30-aa6a5d6eee0e","orcid":"0000-0003-0456-0753","first_name":"Jack Peter Kelly","full_name":"Bravo, Jack Peter Kelly","last_name":"Bravo"},{"first_name":"Thomson","full_name":"Hallmark, Thomson","last_name":"Hallmark"},{"first_name":"Bronson","full_name":"Naegle, Bronson","last_name":"Naegle"},{"first_name":"Chase L.","last_name":"Beisel","full_name":"Beisel, Chase L."},{"last_name":"Jackson","full_name":"Jackson, Ryan N.","first_name":"Ryan N."},{"full_name":"Taylor, David W.","last_name":"Taylor","first_name":"David W."}],"external_id":{"pmid":["36599980"]},"scopus_import":"1"},{"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_type":"original","publisher":"Springer Nature","date_created":"2024-03-21T07:52:44Z","doi":"10.1038/s41586-023-06282-3","extern":"1","publication":"Nature","abstract":[{"text":"The basic helix–loop–helix (bHLH) family of transcription factors recognizes DNA motifs known as E-boxes (CANNTG) and includes 108 members<jats:sup>1</jats:sup>. Here we investigate how chromatinized E-boxes are engaged by two structurally diverse bHLH proteins: the proto-oncogene MYC-MAX and the circadian transcription factor CLOCK-BMAL1 (refs. <jats:sup>2,3</jats:sup>). Both transcription factors bind to E-boxes preferentially near the nucleosomal entry–exit sites. Structural studies with engineered or native nucleosome sequences show that MYC-MAX or CLOCK-BMAL1 triggers the release of DNA from histones to gain access. Atop the H2A–H2B acidic patch<jats:sup>4</jats:sup>, the CLOCK-BMAL1 Per-Arnt-Sim (PAS) dimerization domains engage the histone octamer disc. Binding of tandem E-boxes<jats:sup>5–7</jats:sup> at endogenous DNA sequences occurs through direct interactions between two CLOCK-BMAL1 protomers and histones and is important for circadian cycling. At internal E-boxes, the MYC-MAX leucine zipper can also interact with histones H2B and H3, and its binding is indirectly enhanced by OCT4 elsewhere on the nucleosome. The nucleosomal E-box position and the type of bHLH dimerization domain jointly determine the histone contact, the affinity and the degree of competition and cooperativity with other nucleosome-bound factors.","lang":"eng"}],"publication_status":"published","publication_identifier":{"issn":["0028-0836"],"eissn":["1476-4687"]},"oa_version":"Published Version","issue":"7969","scopus_import":"1","author":[{"last_name":"Michael","full_name":"Michael, Alicia","first_name":"Alicia","orcid":"0000-0002-6080-839X","id":"6437c950-2a03-11ee-914d-d6476dd7b75c"},{"last_name":"Stoos","full_name":"Stoos, Lisa","first_name":"Lisa"},{"first_name":"Priya","last_name":"Crosby","full_name":"Crosby, Priya"},{"first_name":"Nikolas","full_name":"Eggers, Nikolas","last_name":"Eggers"},{"first_name":"Xinyu Y.","last_name":"Nie","full_name":"Nie, Xinyu Y."},{"first_name":"Kristina","last_name":"Makasheva","full_name":"Makasheva, Kristina"},{"last_name":"Minnich","full_name":"Minnich, Martina","first_name":"Martina"},{"last_name":"Healy","full_name":"Healy, Kelly L.","first_name":"Kelly L."},{"full_name":"Weiss, Joscha","last_name":"Weiss","first_name":"Joscha"},{"last_name":"Kempf","full_name":"Kempf, Georg","first_name":"Georg"},{"first_name":"Simone","full_name":"Cavadini, Simone","last_name":"Cavadini"},{"full_name":"Kater, Lukas","last_name":"Kater","first_name":"Lukas"},{"last_name":"Seebacher","full_name":"Seebacher, Jan","first_name":"Jan"},{"first_name":"Luca","last_name":"Vecchia","full_name":"Vecchia, Luca"},{"last_name":"Chakraborty","full_name":"Chakraborty, Deyasini","first_name":"Deyasini"},{"first_name":"Luke","last_name":"Isbel","full_name":"Isbel, Luke"},{"full_name":"Grand, Ralph S.","last_name":"Grand","first_name":"Ralph S."},{"first_name":"Florian","last_name":"Andersch","full_name":"Andersch, Florian"},{"first_name":"Jennifer L.","full_name":"Fribourgh, Jennifer L.","last_name":"Fribourgh"},{"full_name":"Schübeler, Dirk","last_name":"Schübeler","first_name":"Dirk"},{"full_name":"Zuber, Johannes","last_name":"Zuber","first_name":"Johannes"},{"last_name":"Liu","full_name":"Liu, Andrew C.","first_name":"Andrew C."},{"full_name":"Becker, Peter B.","last_name":"Becker","first_name":"Peter B."},{"first_name":"Beat","full_name":"Fierz, Beat","last_name":"Fierz"},{"first_name":"Carrie L.","full_name":"Partch, Carrie L.","last_name":"Partch"},{"first_name":"Jerome S.","full_name":"Menet, Jerome S.","last_name":"Menet"},{"full_name":"Thomä, Nicolas H.","last_name":"Thomä","first_name":"Nicolas H."}],"day":"05","intvolume":"       619","article_processing_charge":"No","type":"journal_article","oa":1,"citation":{"short":"A.K. Michael, L. Stoos, P. Crosby, N. Eggers, X.Y. Nie, K. Makasheva, M. Minnich, K.L. Healy, J. Weiss, G. Kempf, S. Cavadini, L. Kater, J. Seebacher, L. Vecchia, D. Chakraborty, L. Isbel, R.S. Grand, F. Andersch, J.L. Fribourgh, D. Schübeler, J. Zuber, A.C. Liu, P.B. Becker, B. Fierz, C.L. Partch, J.S. Menet, N.H. Thomä, Nature 619 (2023) 385–393.","ama":"Michael AK, Stoos L, Crosby P, et al. Cooperation between bHLH transcription factors and histones for DNA access. <i>Nature</i>. 2023;619(7969):385-393. doi:<a href=\"https://doi.org/10.1038/s41586-023-06282-3\">10.1038/s41586-023-06282-3</a>","chicago":"Michael, Alicia K., Lisa Stoos, Priya Crosby, Nikolas Eggers, Xinyu Y. Nie, Kristina Makasheva, Martina Minnich, et al. “Cooperation between BHLH Transcription Factors and Histones for DNA Access.” <i>Nature</i>. Springer Nature, 2023. <a href=\"https://doi.org/10.1038/s41586-023-06282-3\">https://doi.org/10.1038/s41586-023-06282-3</a>.","mla":"Michael, Alicia K., et al. “Cooperation between BHLH Transcription Factors and Histones for DNA Access.” <i>Nature</i>, vol. 619, no. 7969, Springer Nature, 2023, pp. 385–93, doi:<a href=\"https://doi.org/10.1038/s41586-023-06282-3\">10.1038/s41586-023-06282-3</a>.","ista":"Michael AK, Stoos L, Crosby P, Eggers N, Nie XY, Makasheva K, Minnich M, Healy KL, Weiss J, Kempf G, Cavadini S, Kater L, Seebacher J, Vecchia L, Chakraborty D, Isbel L, Grand RS, Andersch F, Fribourgh JL, Schübeler D, Zuber J, Liu AC, Becker PB, Fierz B, Partch CL, Menet JS, Thomä NH. 2023. Cooperation between bHLH transcription factors and histones for DNA access. Nature. 619(7969), 385–393.","apa":"Michael, A. K., Stoos, L., Crosby, P., Eggers, N., Nie, X. Y., Makasheva, K., … Thomä, N. H. (2023). Cooperation between bHLH transcription factors and histones for DNA access. <i>Nature</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41586-023-06282-3\">https://doi.org/10.1038/s41586-023-06282-3</a>","ieee":"A. K. Michael <i>et al.</i>, “Cooperation between bHLH transcription factors and histones for DNA access,” <i>Nature</i>, vol. 619, no. 7969. Springer Nature, pp. 385–393, 2023."},"year":"2023","month":"07","main_file_link":[{"url":"https://doi.org/10.1038/s41586-023-06282-3","open_access":"1"}],"_id":"15148","date_published":"2023-07-05T00:00:00Z","date_updated":"2024-03-25T12:42:29Z","language":[{"iso":"eng"}],"quality_controlled":"1","title":"Cooperation between bHLH transcription factors and histones for DNA access","volume":619,"status":"public","page":"385-393"},{"article_type":"original","publisher":"Springer Nature","date_created":"2024-03-21T07:53:24Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_identifier":{"issn":["1545-9993"],"eissn":["1545-9985"]},"pmid":1,"oa_version":"Published Version","doi":"10.1038/s41594-023-01021-8","extern":"1","abstract":[{"text":"The genomic binding sites of the transcription factor (TF) and tumor suppressor p53 are unusually diverse with regard to their chromatin features, including histone modifications, raising the possibility that the local chromatin environment can contextualize p53 regulation. Here, we show that epigenetic characteristics of closed chromatin, such as DNA methylation, do not influence the binding of p53 across the genome. Instead, the ability of p53 to open chromatin and activate its target genes is locally restricted by its cofactor Trim24. Trim24 binds to both p53 and unmethylated histone 3 lysine 4 (H3K4), thereby preferentially localizing to those p53 sites that reside in closed chromatin, whereas it is deterred from accessible chromatin by H3K4 methylation. The presence of Trim24 increases cell viability upon stress and enables p53 to affect gene expression as a function of the local chromatin state. These findings link H3K4 methylation to p53 function and illustrate how specificity in chromatin can be achieved, not by TF-intrinsic sensitivity to histone modifications, but by employing chromatin-sensitive cofactors that locally modulate TF function.","lang":"eng"}],"publication":"Nature Structural & Molecular Biology","publication_status":"published","scopus_import":"1","external_id":{"pmid":["37386214"]},"author":[{"first_name":"Luke","last_name":"Isbel","full_name":"Isbel, Luke"},{"full_name":"Iskar, Murat","last_name":"Iskar","first_name":"Murat"},{"full_name":"Durdu, Sevi","last_name":"Durdu","first_name":"Sevi"},{"full_name":"Weiss, Joscha","last_name":"Weiss","first_name":"Joscha"},{"last_name":"Grand","full_name":"Grand, Ralph S.","first_name":"Ralph S."},{"full_name":"Hietter-Pfeiffer, Eric","last_name":"Hietter-Pfeiffer","first_name":"Eric"},{"first_name":"Zuzanna","full_name":"Kozicka, Zuzanna","last_name":"Kozicka"},{"full_name":"Michael, Alicia","last_name":"Michael","orcid":"0000-0002-6080-839X","first_name":"Alicia","id":"6437c950-2a03-11ee-914d-d6476dd7b75c"},{"first_name":"Lukas","last_name":"Burger","full_name":"Burger, Lukas"},{"first_name":"Nicolas H.","last_name":"Thomä","full_name":"Thomä, Nicolas H."},{"full_name":"Schübeler, Dirk","last_name":"Schübeler","first_name":"Dirk"}],"issue":"7","type":"journal_article","article_processing_charge":"No","oa":1,"citation":{"chicago":"Isbel, Luke, Murat Iskar, Sevi Durdu, Joscha Weiss, Ralph S. Grand, Eric Hietter-Pfeiffer, Zuzanna Kozicka, et al. “Readout of Histone Methylation by Trim24 Locally Restricts Chromatin Opening by P53.” <i>Nature Structural &#38; Molecular Biology</i>. Springer Nature, 2023. <a href=\"https://doi.org/10.1038/s41594-023-01021-8\">https://doi.org/10.1038/s41594-023-01021-8</a>.","short":"L. Isbel, M. Iskar, S. Durdu, J. Weiss, R.S. Grand, E. Hietter-Pfeiffer, Z. Kozicka, A.K. Michael, L. Burger, N.H. Thomä, D. Schübeler, Nature Structural &#38; Molecular Biology 30 (2023) 948–957.","ama":"Isbel L, Iskar M, Durdu S, et al. Readout of histone methylation by Trim24 locally restricts chromatin opening by p53. <i>Nature Structural &#38; Molecular Biology</i>. 2023;30(7):948-957. doi:<a href=\"https://doi.org/10.1038/s41594-023-01021-8\">10.1038/s41594-023-01021-8</a>","ieee":"L. Isbel <i>et al.</i>, “Readout of histone methylation by Trim24 locally restricts chromatin opening by p53,” <i>Nature Structural &#38; Molecular Biology</i>, vol. 30, no. 7. Springer Nature, pp. 948–957, 2023.","ista":"Isbel L, Iskar M, Durdu S, Weiss J, Grand RS, Hietter-Pfeiffer E, Kozicka Z, Michael AK, Burger L, Thomä NH, Schübeler D. 2023. Readout of histone methylation by Trim24 locally restricts chromatin opening by p53. Nature Structural &#38; Molecular Biology. 30(7), 948–957.","apa":"Isbel, L., Iskar, M., Durdu, S., Weiss, J., Grand, R. S., Hietter-Pfeiffer, E., … Schübeler, D. (2023). Readout of histone methylation by Trim24 locally restricts chromatin opening by p53. <i>Nature Structural &#38; Molecular Biology</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41594-023-01021-8\">https://doi.org/10.1038/s41594-023-01021-8</a>","mla":"Isbel, Luke, et al. “Readout of Histone Methylation by Trim24 Locally Restricts Chromatin Opening by P53.” <i>Nature Structural &#38; Molecular Biology</i>, vol. 30, no. 7, Springer Nature, 2023, pp. 948–57, doi:<a href=\"https://doi.org/10.1038/s41594-023-01021-8\">10.1038/s41594-023-01021-8</a>."},"day":"29","keyword":["Molecular Biology","Structural Biology"],"intvolume":"        30","month":"06","year":"2023","language":[{"iso":"eng"}],"date_updated":"2024-03-25T12:37:20Z","quality_controlled":"1","_id":"15149","main_file_link":[{"url":"https://doi.org/10.1038/s41594-023-01021-8","open_access":"1"}],"date_published":"2023-06-29T00:00:00Z","title":"Readout of histone methylation by Trim24 locally restricts chromatin opening by p53","volume":30,"page":"948-957","status":"public"},{"month":"02","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"has_accepted_license":"1","ddc":["510"],"year":"2023","quality_controlled":"1","language":[{"iso":"eng"}],"date_updated":"2025-09-09T14:26:32Z","_id":"15173","date_published":"2023-02-01T00:00:00Z","volume":361,"title":"Enumerating matroids and linear spaces","arxiv":1,"page":"565-575","status":"public","date_created":"2024-03-24T23:01:00Z","article_type":"original","publisher":"Academie des Sciences","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","publication_identifier":{"issn":["1631-073X"],"eissn":["1778-3569"]},"oa_version":"Published Version","publication":"Comptes Rendus Mathematique","file":[{"date_created":"2024-03-25T07:21:52Z","file_size":598097,"access_level":"open_access","content_type":"application/pdf","relation":"main_file","file_id":"15174","creator":"dernst","date_updated":"2024-03-25T07:21:52Z","file_name":"2023_ComptesRendusMath_Kwan.pdf","success":1,"checksum":"d1d0e0a854a79ae95fb66d75d9117a68"}],"abstract":[{"lang":"eng","text":"We show that the number of linear spaces on a set of n points and the number of rank-3 matroids on a ground set of size n are both of the form (cn+o(n))n2/6, where c=e3√/2−3(1+3–√)/2. This is the final piece of the puzzle for enumerating fixed-rank matroids at this level of accuracy: the numbers of rank-1 and rank-2 matroids on a ground set of size n have exact representations in terms of well-known combinatorial functions, and it was recently proved by van der Hofstad, Pendavingh, and van der Pol that for constant r≥4 there are (e1−rn+o(n))nr−1/r! rank-r matroids on a ground set of size n. In our proof, we introduce a new approach for bounding the number of clique decompositions of a complete graph, using quasirandomness instead of the so-called entropy method that is common in this area."}],"publication_status":"published","doi":"10.5802/crmath.423","author":[{"full_name":"Kwan, Matthew Alan","last_name":"Kwan","id":"5fca0887-a1db-11eb-95d1-ca9d5e0453b3","first_name":"Matthew Alan","orcid":"0000-0002-4003-7567"},{"full_name":"Sah, Ashwin","last_name":"Sah","first_name":"Ashwin"},{"first_name":"Mehtaab","last_name":"Sawhney","full_name":"Sawhney, Mehtaab"}],"scopus_import":"1","external_id":{"isi":["001167671400009"],"arxiv":["2112.03788"]},"isi":1,"department":[{"_id":"MaKw"}],"issue":"G2","acknowledgement":"Sah and Sawhney were supported by NSF Graduate Research Fellowship Program DGE-1745302. Sah was supported by the PD Soros Fellowship.\r\nWe thank Michael Simkin for helpful comments on the manuscript. We thank Zach Hunter for\r\nseveral corrections.","citation":{"chicago":"Kwan, Matthew Alan, Ashwin Sah, and Mehtaab Sawhney. “Enumerating Matroids and Linear Spaces.” <i>Comptes Rendus Mathematique</i>. Academie des Sciences, 2023. <a href=\"https://doi.org/10.5802/crmath.423\">https://doi.org/10.5802/crmath.423</a>.","ama":"Kwan MA, Sah A, Sawhney M. Enumerating matroids and linear spaces. <i>Comptes Rendus Mathematique</i>. 2023;361(G2):565-575. doi:<a href=\"https://doi.org/10.5802/crmath.423\">10.5802/crmath.423</a>","short":"M.A. Kwan, A. Sah, M. Sawhney, Comptes Rendus Mathematique 361 (2023) 565–575.","ieee":"M. A. Kwan, A. Sah, and M. Sawhney, “Enumerating matroids and linear spaces,” <i>Comptes Rendus Mathematique</i>, vol. 361, no. G2. Academie des Sciences, pp. 565–575, 2023.","mla":"Kwan, Matthew Alan, et al. “Enumerating Matroids and Linear Spaces.” <i>Comptes Rendus Mathematique</i>, vol. 361, no. G2, Academie des Sciences, 2023, pp. 565–75, doi:<a href=\"https://doi.org/10.5802/crmath.423\">10.5802/crmath.423</a>.","apa":"Kwan, M. A., Sah, A., &#38; Sawhney, M. (2023). Enumerating matroids and linear spaces. <i>Comptes Rendus Mathematique</i>. Academie des Sciences. <a href=\"https://doi.org/10.5802/crmath.423\">https://doi.org/10.5802/crmath.423</a>","ista":"Kwan MA, Sah A, Sawhney M. 2023. Enumerating matroids and linear spaces. Comptes Rendus Mathematique. 361(G2), 565–575."},"article_processing_charge":"Yes","type":"journal_article","oa":1,"intvolume":"       361","day":"01","file_date_updated":"2024-03-25T07:21:52Z"},{"status":"public","arxiv":1,"page":"12219-12231","title":"The detection of polarized X-ray emission from the magnetar 1E 2259+586","volume":527,"_id":"15190","main_file_link":[{"url":"https://doi.org/10.1093/mnras/stad3680","open_access":"1"}],"date_published":"2023-12-01T00:00:00Z","date_updated":"2024-04-02T06:51:04Z","language":[{"iso":"eng"}],"quality_controlled":"1","year":"2023","month":"12","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"day":"01","keyword":["Space and Planetary Science","Astronomy and Astrophysics"],"intvolume":"       527","type":"journal_article","article_processing_charge":"No","oa":1,"citation":{"ieee":"J. Heyl <i>et al.</i>, “The detection of polarized X-ray emission from the magnetar 1E 2259+586,” <i>Monthly Notices of the Royal Astronomical Society</i>, vol. 527, no. 4. Oxford University Press, pp. 12219–12231, 2023.","apa":"Heyl, J., Taverna, R., Turolla, R., Israel, G. L., Ng, M., Kırmızıbayrak, D., … Xie, F. (2023). The detection of polarized X-ray emission from the magnetar 1E 2259+586. <i>Monthly Notices of the Royal Astronomical Society</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/mnras/stad3680\">https://doi.org/10.1093/mnras/stad3680</a>","ista":"Heyl J et al. 2023. The detection of polarized X-ray emission from the magnetar 1E 2259+586. Monthly Notices of the Royal Astronomical Society. 527(4), 12219–12231.","mla":"Heyl, Jeremy, et al. “The Detection of Polarized X-Ray Emission from the Magnetar 1E 2259+586.” <i>Monthly Notices of the Royal Astronomical Society</i>, vol. 527, no. 4, Oxford University Press, 2023, pp. 12219–31, doi:<a href=\"https://doi.org/10.1093/mnras/stad3680\">10.1093/mnras/stad3680</a>.","chicago":"Heyl, Jeremy, Roberto Taverna, Roberto Turolla, Gian Luca Israel, Mason Ng, Demet Kırmızıbayrak, Denis González-Caniulef, et al. “The Detection of Polarized X-Ray Emission from the Magnetar 1E 2259+586.” <i>Monthly Notices of the Royal Astronomical Society</i>. Oxford University Press, 2023. <a href=\"https://doi.org/10.1093/mnras/stad3680\">https://doi.org/10.1093/mnras/stad3680</a>.","ama":"Heyl J, Taverna R, Turolla R, et al. The detection of polarized X-ray emission from the magnetar 1E 2259+586. <i>Monthly Notices of the Royal Astronomical Society</i>. 2023;527(4):12219-12231. doi:<a href=\"https://doi.org/10.1093/mnras/stad3680\">10.1093/mnras/stad3680</a>","short":"J. Heyl, R. Taverna, R. Turolla, G.L. Israel, M. Ng, D. Kırmızıbayrak, D. González-Caniulef, I. Caiazzo, S. Zane, S.R. Ehlert, M. Negro, I. Agudo, L.A. Antonelli, M. Bachetti, L. Baldini, W.H. Baumgartner, R. Bellazzini, S. Bianchi, S.D. Bongiorno, R. Bonino, A. Brez, N. Bucciantini, F. Capitanio, S. Castellano, E. Cavazzuti, C.-T. Chen, S. Ciprini, E. Costa, A. De Rosa, E. Del Monte, L. Di Gesu, N. Di Lalla, A. Di Marco, I. Donnarumma, V. Doroshenko, M. Dovčiak, T. Enoto, Y. Evangelista, S. Fabiani, R. Ferrazzoli, J.A. Garcia, S. Gunji, K. Hayashida, W. Iwakiri, S.G. Jorstad, P. Kaaret, V. Karas, F. Kislat, T. Kitaguchi, J.J. Kolodziejczak, H. Krawczynski, F.L. Monaca, L. Latronico, I. Liodakis, S. Maldera, A. Manfreda, F. Marin, A. Marinucci, A.P. Marscher, H.L. Marshall, F. Massaro, G. Matt, I. Mitsuishi, T. Mizuno, F. Muleri, C.-Y. Ng, S.L. O’Dell, N. Omodei, C. Oppedisano, A. Papitto, G.G. Pavlov, A.L. Peirson, M. Perri, M. Pesce-Rollins, P.-O. Petrucci, M. Pilia, A. Possenti, J. Poutanen, S. Puccetti, B.D. Ramsey, J. Rankin, A. Ratheesh, O.J. Roberts, R.W. Romani, C. Sgrò, P. Slane, P. Soffitta, G. Spandre, D.A. Swartz, T. Tamagawa, F. Tavecchio, Y. Tawara, A.F. Tennant, N.E. Thomas, F. Tombesi, A. Trois, S.S. Tsygankov, J. Vink, M.C. Weisskopf, K. Wu, F. Xie, Monthly Notices of the Royal Astronomical Society 527 (2023) 12219–12231."},"issue":"4","scopus_import":"1","external_id":{"arxiv":["2311.03637"]},"author":[{"full_name":"Heyl, Jeremy","last_name":"Heyl","first_name":"Jeremy"},{"first_name":"Roberto","last_name":"Taverna","full_name":"Taverna, Roberto"},{"last_name":"Turolla","full_name":"Turolla, Roberto","first_name":"Roberto"},{"last_name":"Israel","full_name":"Israel, Gian Luca","first_name":"Gian Luca"},{"last_name":"Ng","full_name":"Ng, Mason","first_name":"Mason"},{"full_name":"Kırmızıbayrak, Demet","last_name":"Kırmızıbayrak","first_name":"Demet"},{"first_name":"Denis","full_name":"González-Caniulef, Denis","last_name":"González-Caniulef"},{"last_name":"Caiazzo","full_name":"Caiazzo, Ilaria","orcid":"0000-0002-4770-5388","first_name":"Ilaria","id":"8ae5b6e7-2a03-11ee-914d-b58ed7a3b47d"},{"last_name":"Zane","full_name":"Zane, Silvia","first_name":"Silvia"},{"last_name":"Ehlert","full_name":"Ehlert, Steven R","first_name":"Steven R"},{"full_name":"Negro, Michela","last_name":"Negro","first_name":"Michela"},{"first_name":"Iván","last_name":"Agudo","full_name":"Agudo, Iván"},{"last_name":"Antonelli","full_name":"Antonelli, Lucio Angelo","first_name":"Lucio Angelo"},{"first_name":"Matteo","full_name":"Bachetti, Matteo","last_name":"Bachetti"},{"first_name":"Luca","full_name":"Baldini, Luca","last_name":"Baldini"},{"full_name":"Baumgartner, Wayne H","last_name":"Baumgartner","first_name":"Wayne H"},{"first_name":"Ronaldo","full_name":"Bellazzini, Ronaldo","last_name":"Bellazzini"},{"first_name":"Stefano","full_name":"Bianchi, Stefano","last_name":"Bianchi"},{"full_name":"Bongiorno, Stephen D","last_name":"Bongiorno","first_name":"Stephen D"},{"first_name":"Raffaella","full_name":"Bonino, Raffaella","last_name":"Bonino"},{"first_name":"Alessandro","full_name":"Brez, Alessandro","last_name":"Brez"},{"first_name":"Niccolò","full_name":"Bucciantini, Niccolò","last_name":"Bucciantini"},{"first_name":"Fiamma","full_name":"Capitanio, Fiamma","last_name":"Capitanio"},{"last_name":"Castellano","full_name":"Castellano, Simone","first_name":"Simone"},{"full_name":"Cavazzuti, Elisabetta","last_name":"Cavazzuti","first_name":"Elisabetta"},{"first_name":"Chien-Ting","last_name":"Chen","full_name":"Chen, Chien-Ting"},{"full_name":"Ciprini, Stefano","last_name":"Ciprini","first_name":"Stefano"},{"full_name":"Costa, Enrico","last_name":"Costa","first_name":"Enrico"},{"full_name":"De Rosa, Alessandra","last_name":"De Rosa","first_name":"Alessandra"},{"full_name":"Del Monte, Ettore","last_name":"Del Monte","first_name":"Ettore"},{"full_name":"Di Gesu, Laura","last_name":"Di Gesu","first_name":"Laura"},{"last_name":"Di Lalla","full_name":"Di Lalla, Niccolò","first_name":"Niccolò"},{"first_name":"Alessandro","full_name":"Di Marco, Alessandro","last_name":"Di Marco"},{"first_name":"Immacolata","last_name":"Donnarumma","full_name":"Donnarumma, Immacolata"},{"full_name":"Doroshenko, Victor","last_name":"Doroshenko","first_name":"Victor"},{"first_name":"Michal","last_name":"Dovčiak","full_name":"Dovčiak, Michal"},{"full_name":"Enoto, Teruaki","last_name":"Enoto","first_name":"Teruaki"},{"first_name":"Yuri","last_name":"Evangelista","full_name":"Evangelista, Yuri"},{"full_name":"Fabiani, Sergio","last_name":"Fabiani","first_name":"Sergio"},{"last_name":"Ferrazzoli","full_name":"Ferrazzoli, Riccardo","first_name":"Riccardo"},{"first_name":"Javier A","last_name":"Garcia","full_name":"Garcia, Javier A"},{"first_name":"Shuichi","full_name":"Gunji, Shuichi","last_name":"Gunji"},{"first_name":"Kiyoshi","full_name":"Hayashida, Kiyoshi","last_name":"Hayashida"},{"full_name":"Iwakiri, Wataru","last_name":"Iwakiri","first_name":"Wataru"},{"last_name":"Jorstad","full_name":"Jorstad, Svetlana G","first_name":"Svetlana G"},{"first_name":"Philip","last_name":"Kaaret","full_name":"Kaaret, Philip"},{"last_name":"Karas","full_name":"Karas, Vladimir","first_name":"Vladimir"},{"last_name":"Kislat","full_name":"Kislat, Fabian","first_name":"Fabian"},{"first_name":"Takao","last_name":"Kitaguchi","full_name":"Kitaguchi, Takao"},{"first_name":"Jeffery J","last_name":"Kolodziejczak","full_name":"Kolodziejczak, Jeffery J"},{"last_name":"Krawczynski","full_name":"Krawczynski, Henric","first_name":"Henric"},{"first_name":"Fabio La","full_name":"Monaca, Fabio La","last_name":"Monaca"},{"first_name":"Luca","full_name":"Latronico, Luca","last_name":"Latronico"},{"full_name":"Liodakis, Ioannis","last_name":"Liodakis","first_name":"Ioannis"},{"last_name":"Maldera","full_name":"Maldera, Simone","first_name":"Simone"},{"full_name":"Manfreda, Alberto","last_name":"Manfreda","first_name":"Alberto"},{"full_name":"Marin, Frédéric","last_name":"Marin","first_name":"Frédéric"},{"first_name":"Andrea","full_name":"Marinucci, Andrea","last_name":"Marinucci"},{"last_name":"Marscher","full_name":"Marscher, Alan P","first_name":"Alan P"},{"full_name":"Marshall, Herman L","last_name":"Marshall","first_name":"Herman L"},{"first_name":"Francesco","full_name":"Massaro, Francesco","last_name":"Massaro"},{"first_name":"Giorgio","last_name":"Matt","full_name":"Matt, Giorgio"},{"first_name":"Ikuyuki","full_name":"Mitsuishi, Ikuyuki","last_name":"Mitsuishi"},{"last_name":"Mizuno","full_name":"Mizuno, Tsunefumi","first_name":"Tsunefumi"},{"first_name":"Fabio","last_name":"Muleri","full_name":"Muleri, Fabio"},{"last_name":"Ng","full_name":"Ng, C-Y","first_name":"C-Y"},{"first_name":"Stephen L","full_name":"O’Dell, Stephen L","last_name":"O’Dell"},{"last_name":"Omodei","full_name":"Omodei, Nicola","first_name":"Nicola"},{"full_name":"Oppedisano, Chiara","last_name":"Oppedisano","first_name":"Chiara"},{"first_name":"Alessandro","full_name":"Papitto, Alessandro","last_name":"Papitto"},{"full_name":"Pavlov, George G","last_name":"Pavlov","first_name":"George G"},{"first_name":"Abel Lawrence","full_name":"Peirson, Abel Lawrence","last_name":"Peirson"},{"full_name":"Perri, Matteo","last_name":"Perri","first_name":"Matteo"},{"first_name":"Melissa","full_name":"Pesce-Rollins, Melissa","last_name":"Pesce-Rollins"},{"first_name":"Pierre-Olivier","last_name":"Petrucci","full_name":"Petrucci, Pierre-Olivier"},{"full_name":"Pilia, Maura","last_name":"Pilia","first_name":"Maura"},{"first_name":"Andrea","full_name":"Possenti, Andrea","last_name":"Possenti"},{"first_name":"Juri","full_name":"Poutanen, Juri","last_name":"Poutanen"},{"first_name":"Simonetta","full_name":"Puccetti, Simonetta","last_name":"Puccetti"},{"last_name":"Ramsey","full_name":"Ramsey, Brian D","first_name":"Brian D"},{"first_name":"John","full_name":"Rankin, John","last_name":"Rankin"},{"full_name":"Ratheesh, Ajay","last_name":"Ratheesh","first_name":"Ajay"},{"first_name":"Oliver J","full_name":"Roberts, Oliver J","last_name":"Roberts"},{"first_name":"Roger W","full_name":"Romani, Roger W","last_name":"Romani"},{"full_name":"Sgrò, Carmelo","last_name":"Sgrò","first_name":"Carmelo"},{"last_name":"Slane","full_name":"Slane, Patrick","first_name":"Patrick"},{"full_name":"Soffitta, Paolo","last_name":"Soffitta","first_name":"Paolo"},{"last_name":"Spandre","full_name":"Spandre, Gloria","first_name":"Gloria"},{"last_name":"Swartz","full_name":"Swartz, Douglas A","first_name":"Douglas A"},{"full_name":"Tamagawa, Toru","last_name":"Tamagawa","first_name":"Toru"},{"full_name":"Tavecchio, Fabrizio","last_name":"Tavecchio","first_name":"Fabrizio"},{"first_name":"Yuzuru","last_name":"Tawara","full_name":"Tawara, Yuzuru"},{"last_name":"Tennant","full_name":"Tennant, Allyn F","first_name":"Allyn F"},{"last_name":"Thomas","full_name":"Thomas, Nicholas E","first_name":"Nicholas E"},{"last_name":"Tombesi","full_name":"Tombesi, Francesco","first_name":"Francesco"},{"last_name":"Trois","full_name":"Trois, Alessio","first_name":"Alessio"},{"first_name":"Sergey S","last_name":"Tsygankov","full_name":"Tsygankov, Sergey S"},{"first_name":"Jacco","last_name":"Vink","full_name":"Vink, Jacco"},{"first_name":"Martin C","full_name":"Weisskopf, Martin C","last_name":"Weisskopf"},{"first_name":"Kinwah","last_name":"Wu","full_name":"Wu, Kinwah"},{"full_name":"Xie, Fei","last_name":"Xie","first_name":"Fei"}],"extern":"1","doi":"10.1093/mnras/stad3680","abstract":[{"lang":"eng","text":"We report on IXPE, NICER, and XMM–Newton observations of the magnetar 1E 2259+586. We find that the source is significantly polarized at about or above 20  per cent for all phases except for the secondary peak where it is more weakly polarized. The polarization degree is strongest during the primary minimum which is also the phase where an absorption feature has been identified previously. The polarization angle of the photons are consistent with a rotating vector model with a mode switch between the primary minimum and the rest of the rotation of the neutron star. We propose a scenario in which the emission at the source is weakly polarized (as in a condensed surface) and, as the radiation passes through a plasma arch, resonant cyclotron scattering off of protons produces the observed polarized radiation. This confirms the magnetar nature of the source with a surface field greater than about 1015 G."}],"publication":"Monthly Notices of the Royal Astronomical Society","publication_status":"published","publication_identifier":{"issn":["0035-8711"],"eissn":["1365-2966"]},"oa_version":"Published Version","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"Oxford University Press","article_type":"original","date_created":"2024-03-26T09:44:24Z"}]