[{"external_id":{"arxiv":["2301.09875"]},"volume":5,"language":[{"iso":"eng"}],"oa_version":"Published Version","intvolume":"         5","date_published":"2023-10-05T00:00:00Z","type":"journal_article","ddc":["530"],"file":[{"checksum":"cb8de8fed6e09df1a18bd5a5aec5c55c","creator":"dernst","content_type":"application/pdf","file_name":"2023_PhysReviewResearch_Koutentakis.pdf","date_updated":"2023-11-07T07:52:46Z","date_created":"2023-11-07T07:52:46Z","success":1,"file_id":"14493","access_level":"open_access","relation":"main_file","file_size":1127522}],"quality_controlled":"1","month":"10","doi":"10.1103/PhysRevResearch.5.043016","scopus_import":"1","corr_author":"1","status":"public","has_accepted_license":"1","project":[{"_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c","grant_number":"101034413","name":"IST-BRIDGE: International postdoctoral program","call_identifier":"H2020"},{"call_identifier":"H2020","grant_number":"801770","_id":"2688CF98-B435-11E9-9278-68D0E5697425","name":"Angulon: physics and applications of a new quasiparticle"}],"department":[{"_id":"MiLe"}],"license":"https://creativecommons.org/licenses/by/4.0/","issue":"4","article_type":"original","citation":{"ista":"Koutentakis G, Ghazaryan A, Lemeshko M. 2023. Rotor lattice model of ferroelectric large polarons. Physical Review Research. 5(4), 043016.","ama":"Koutentakis G, Ghazaryan A, Lemeshko M. Rotor lattice model of ferroelectric large polarons. <i>Physical Review Research</i>. 2023;5(4). doi:<a href=\"https://doi.org/10.1103/PhysRevResearch.5.043016\">10.1103/PhysRevResearch.5.043016</a>","apa":"Koutentakis, G., Ghazaryan, A., &#38; Lemeshko, M. (2023). Rotor lattice model of ferroelectric large polarons. <i>Physical Review Research</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevResearch.5.043016\">https://doi.org/10.1103/PhysRevResearch.5.043016</a>","mla":"Koutentakis, Georgios, et al. “Rotor Lattice Model of Ferroelectric Large Polarons.” <i>Physical Review Research</i>, vol. 5, no. 4, 043016, American Physical Society, 2023, doi:<a href=\"https://doi.org/10.1103/PhysRevResearch.5.043016\">10.1103/PhysRevResearch.5.043016</a>.","ieee":"G. Koutentakis, A. Ghazaryan, and M. Lemeshko, “Rotor lattice model of ferroelectric large polarons,” <i>Physical Review Research</i>, vol. 5, no. 4. American Physical Society, 2023.","short":"G. Koutentakis, A. Ghazaryan, M. Lemeshko, Physical Review Research 5 (2023).","chicago":"Koutentakis, Georgios, Areg Ghazaryan, and Mikhail Lemeshko. “Rotor Lattice Model of Ferroelectric Large Polarons.” <i>Physical Review Research</i>. American Physical Society, 2023. <a href=\"https://doi.org/10.1103/PhysRevResearch.5.043016\">https://doi.org/10.1103/PhysRevResearch.5.043016</a>."},"file_date_updated":"2023-11-07T07:52:46Z","article_number":"043016","oa":1,"acknowledgement":"We thank Zh. Alpichshev, A. Volosniev, and A. V. Zampetaki for fruitful discussions and comments. This project received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 101034413. M.L. acknowledges support by the European Research Council (ERC) Starting Grant No. 801770 (ANGULON).","fulldoi":"https://doi.org/10.1103/PhysRevResearch.5.043016","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"American Physical Society","date_created":"2023-11-05T23:00:53Z","arxiv":1,"date_updated":"2025-04-14T07:48:54Z","ec_funded":1,"publication_status":"published","day":"05","article_processing_charge":"Yes","publication_identifier":{"issn":["2643-1564"]},"year":"2023","_id":"14486","abstract":[{"lang":"eng","text":"We present a minimal model of ferroelectric large polarons, which are suggested as one of the mechanisms responsible for the unique charge transport properties of hybrid perovskites. We demonstrate that short-ranged charge–rotor interactions lead to long-range ferroelectric ordering of rotors, which strongly affects the carrier mobility. In the nonperturbative regime, where our theory cannot be reduced to any of the earlier models, we reveal that the polaron is characterized by large coherence length and a roughly tenfold increase of the effective mass as compared to the bare mass. These results are in good agreement with other theoretical predictions for ferroelectric polarons. Our model establishes a general phenomenological framework for ferroelectric polarons providing the starting point for future studies of their role in the transport properties of hybrid organic-inorganic perovskites."}],"title":"Rotor lattice model of ferroelectric large polarons","publication":"Physical Review Research","author":[{"last_name":"Koutentakis","full_name":"Koutentakis, Georgios","first_name":"Georgios","id":"d7b23d3a-9e21-11ec-b482-f76739596b95"},{"full_name":"Ghazaryan, Areg","last_name":"Ghazaryan","id":"4AF46FD6-F248-11E8-B48F-1D18A9856A87","first_name":"Areg","orcid":"0000-0001-9666-3543"},{"orcid":"0000-0002-6990-7802","first_name":"Mikhail","id":"37CB05FA-F248-11E8-B48F-1D18A9856A87","full_name":"Lemeshko, Mikhail","last_name":"Lemeshko"}]},{"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","publisher":"Wiley","isi":1,"date_created":"2023-11-05T23:00:53Z","fulldoi":"https://doi.org/10.1029/2022WR033841","acknowledgement":"This project has received funding from the JSPS-SNSF (Japan Society for the Promotion of Science and Swiss National Science Foundation) Bilateral Programmes project (HOPE, High-ele-vation precipitation in High Mountain Asia; Grant 183633), and the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation program (RAVEN, Rapid mass losses of debris-covered glaciers in High Mountain Asia; Grant 772751). We want to thank in particular T. Gurung, S. Joshi, J. Shea, W. Immerzeel, and others involved, as well as ICIMOD, for their efforts over the past years in observing the meteorology of the Langtang catchment, collecting and organizing the data and making them publicly available. We also thank the National Geographic Society (Grant NGS-61784R-19) and the Mount Everest Foundation (reference 19-24) for providing fieldwork funding for C. L. Fyffe. We thank T. Kramer for help with the WSL Hyperion cluster. We are grate-ful for comments by three anonymous reviewers and the Associate Editor, who greatly helped to improve the manuscript further. Open access funding provided by ETH-Bereich Forschungsanstalten.","tmp":{"name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","image":"/images/cc_by_nc_nd.png","short":"CC BY-NC-ND (4.0)"},"citation":{"ama":"Buri P, Fatichi S, Shaw T, et al. Land surface modeling in the Himalayas: On the importance of evaporative fluxes for the water balance of a high-elevation catchment. <i>Water Resources Research</i>. 2023;59(10). doi:<a href=\"https://doi.org/10.1029/2022WR033841\">10.1029/2022WR033841</a>","apa":"Buri, P., Fatichi, S., Shaw, T., Miles, E. S., McCarthy, M., Fyffe, C. L., … Pellicciotti, F. (2023). Land surface modeling in the Himalayas: On the importance of evaporative fluxes for the water balance of a high-elevation catchment. <i>Water Resources Research</i>. Wiley. <a href=\"https://doi.org/10.1029/2022WR033841\">https://doi.org/10.1029/2022WR033841</a>","mla":"Buri, Pascal, et al. “Land Surface Modeling in the Himalayas: On the Importance of Evaporative Fluxes for the Water Balance of a High-Elevation Catchment.” <i>Water Resources Research</i>, vol. 59, no. 10, e2022WR033841, Wiley, 2023, doi:<a href=\"https://doi.org/10.1029/2022WR033841\">10.1029/2022WR033841</a>.","ista":"Buri P, Fatichi S, Shaw T, Miles ES, McCarthy M, Fyffe CL, Fugger S, Ren S, Kneib M, Jouberton A, Steiner J, Fujita K, Pellicciotti F. 2023. Land surface modeling in the Himalayas: On the importance of evaporative fluxes for the water balance of a high-elevation catchment. Water Resources Research. 59(10), e2022WR033841.","ieee":"P. Buri <i>et al.</i>, “Land surface modeling in the Himalayas: On the importance of evaporative fluxes for the water balance of a high-elevation catchment,” <i>Water Resources Research</i>, vol. 59, no. 10. Wiley, 2023.","chicago":"Buri, Pascal, Simone Fatichi, Thomas Shaw, Evan S. Miles, Michael McCarthy, Catriona Louise Fyffe, Stefan Fugger, et al. “Land Surface Modeling in the Himalayas: On the Importance of Evaporative Fluxes for the Water Balance of a High-Elevation Catchment.” <i>Water Resources Research</i>. Wiley, 2023. <a href=\"https://doi.org/10.1029/2022WR033841\">https://doi.org/10.1029/2022WR033841</a>.","short":"P. Buri, S. Fatichi, T. Shaw, E.S. Miles, M. McCarthy, C.L. Fyffe, S. Fugger, S. Ren, M. Kneib, A. Jouberton, J. Steiner, K. Fujita, F. Pellicciotti, Water Resources Research 59 (2023)."},"file_date_updated":"2023-11-07T08:10:44Z","article_number":"e2022WR033841","oa":1,"license":"https://creativecommons.org/licenses/by-nc-nd/4.0/","issue":"10","article_type":"original","abstract":[{"text":"High Mountain Asia (HMA) is among the most vulnerable water towers globally and yet future projections of water availability in and from its high-mountain catchments remain uncertain, as their hydrologic response to ongoing environmental changes is complex. Mechanistic modeling approaches incorporating cryospheric, hydrological, and vegetation processes in high spatial, temporal, and physical detail have never been applied for high-elevation catchments of HMA. We use a land surface model at high spatial and temporal resolution (100 m and hourly) to simulate the coupled dynamics of energy, water, and vegetation for the 350 km2 Langtang catchment (Nepal). We compare our model outputs for one hydrological year against a large set of observations to gain insight into the partitioning of the water balance at the subseasonal scale and across elevation bands. During the simulated hydrological year, we find that evapotranspiration is a key component of the total water balance, as it causes about the equivalent of 20% of all the available precipitation or 154% of the water production from glacier melt in the basin to return directly to the atmosphere. The depletion of the cryospheric water budget is dominated by snow melt, but at high elevations is primarily dictated by snow and ice sublimation. Snow sublimation is the dominant vapor flux (49%) at the catchment scale, accounting for the equivalent of 11% of snowfall, 17% of snowmelt, and 75% of ice melt, respectively. We conclude that simulations should consider sublimation and other evaporative fluxes explicitly, as otherwise water balance estimates can be ill-quantified.","lang":"eng"}],"title":"Land surface modeling in the Himalayas: On the importance of evaporative fluxes for the water balance of a high-elevation catchment","author":[{"first_name":"Pascal","full_name":"Buri, Pascal","last_name":"Buri"},{"first_name":"Simone","full_name":"Fatichi, Simone","last_name":"Fatichi"},{"orcid":"0000-0001-7640-6152","first_name":"Thomas","id":"3caa3f91-1f03-11ee-96ce-e0e553054d6e","last_name":"Shaw","full_name":"Shaw, Thomas"},{"full_name":"Miles, Evan S.","last_name":"Miles","first_name":"Evan S."},{"id":"22a2674a-61ce-11ee-94b5-d18813baf16f","first_name":"Michael","last_name":"Mccarthy","full_name":"Mccarthy, Michael"},{"first_name":"Catriona Louise","id":"001b0422-8d15-11ed-bc51-cab6c037a228","full_name":"Fyffe, Catriona Louise","last_name":"Fyffe"},{"last_name":"Fugger","full_name":"Fugger, Stefan","first_name":"Stefan"},{"first_name":"Shaoting","full_name":"Ren, Shaoting","last_name":"Ren"},{"last_name":"Kneib","full_name":"Kneib, Marin","first_name":"Marin"},{"first_name":"Achille","full_name":"Jouberton, Achille","last_name":"Jouberton"},{"last_name":"Steiner","full_name":"Steiner, Jakob","first_name":"Jakob"},{"full_name":"Fujita, Koji","last_name":"Fujita","first_name":"Koji"},{"last_name":"Pellicciotti","full_name":"Pellicciotti, Francesca","first_name":"Francesca","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","orcid":"0000-0002-5554-8087"}],"publication":"Water Resources Research","publication_identifier":{"eissn":["1944-7973"],"issn":["0043-1397"]},"year":"2023","_id":"14487","publication_status":"published","article_processing_charge":"Yes (via OA deal)","day":"25","date_updated":"2025-09-09T13:15:40Z","month":"10","ddc":["550"],"file":[{"checksum":"7ba9c87228dc09029b16bc800a0ef1a1","creator":"dernst","content_type":"application/pdf","file_name":"2023_WaterResourcesResearch_Buri.pdf","date_updated":"2023-11-07T08:10:44Z","date_created":"2023-11-07T08:10:44Z","file_id":"14495","success":1,"access_level":"open_access","relation":"main_file","file_size":5554901}],"quality_controlled":"1","oa_version":"Published Version","intvolume":"        59","date_published":"2023-10-25T00:00:00Z","type":"journal_article","volume":59,"external_id":{"isi":["001091989600005"]},"language":[{"iso":"eng"}],"status":"public","has_accepted_license":"1","department":[{"_id":"FrPe"}],"scopus_import":"1","doi":"10.1029/2022WR033841","related_material":{"record":[{"status":"public","id":"14494","relation":"research_data"}]}},{"fulldoi":"https://doi.org/10.1002/lpor.202200866","acknowledgement":"This work was supported by the National Key Research and Development Program of China (Grant no. 2022YFA1405200), the National Natural Science Foundation of China (Nos. 92265202), and the European Research Council (ERC CoG Q-ECHOS, 101001005).","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","isi":1,"publisher":"Wiley","date_created":"2023-11-05T23:00:54Z","issue":"12","article_type":"original","citation":{"ista":"Fan ZY, Qiu L, Gröblacher S, Li J. 2023. Microwave-optics entanglement via cavity optomagnomechanics. Laser and Photonics Reviews. 17(12), 2200866.","mla":"Fan, Zhi Yuan, et al. “Microwave-Optics Entanglement via Cavity Optomagnomechanics.” <i>Laser and Photonics Reviews</i>, vol. 17, no. 12, 2200866, Wiley, 2023, doi:<a href=\"https://doi.org/10.1002/lpor.202200866\">10.1002/lpor.202200866</a>.","ama":"Fan ZY, Qiu L, Gröblacher S, Li J. Microwave-optics entanglement via cavity optomagnomechanics. <i>Laser and Photonics Reviews</i>. 2023;17(12). doi:<a href=\"https://doi.org/10.1002/lpor.202200866\">10.1002/lpor.202200866</a>","apa":"Fan, Z. Y., Qiu, L., Gröblacher, S., &#38; Li, J. (2023). Microwave-optics entanglement via cavity optomagnomechanics. <i>Laser and Photonics Reviews</i>. Wiley. <a href=\"https://doi.org/10.1002/lpor.202200866\">https://doi.org/10.1002/lpor.202200866</a>","ieee":"Z. Y. Fan, L. Qiu, S. Gröblacher, and J. Li, “Microwave-optics entanglement via cavity optomagnomechanics,” <i>Laser and Photonics Reviews</i>, vol. 17, no. 12. Wiley, 2023.","chicago":"Fan, Zhi Yuan, Liu Qiu, Simon Gröblacher, and Jie Li. “Microwave-Optics Entanglement via Cavity Optomagnomechanics.” <i>Laser and Photonics Reviews</i>. Wiley, 2023. <a href=\"https://doi.org/10.1002/lpor.202200866\">https://doi.org/10.1002/lpor.202200866</a>.","short":"Z.Y. Fan, L. Qiu, S. Gröblacher, J. Li, Laser and Photonics Reviews 17 (2023)."},"article_number":"2200866","oa":1,"publication_identifier":{"eissn":["1863-8899"],"issn":["1863-8880"]},"year":"2023","_id":"14489","abstract":[{"text":"Microwave-optics entanglement is a vital component for building hybrid quantum networks. Here, a new mechanism for preparing stationary entanglement between microwave and optical cavity fields in a cavity optomagnomechanical system is proposed. It consists of a magnon mode in a ferrimagnetic crystal that couples directly to a microwave cavity mode via the magnetic dipole interaction and indirectly to an optical cavity through the deformation displacement of the crystal. The mechanical displacement is induced by the magnetostrictive force and coupled to the optical cavity via radiation pressure. Both the opto- and magnomechanical couplings are dispersive. Magnon–phonon entanglement is created via magnomechanical parametric down-conversion, which is further distributed to optical and microwave photons via simultaneous optomechanical beamsplitter interaction and electromagnonic state-swap interaction, yielding stationary microwave-optics entanglement. The microwave-optics entanglement is robust against thermal noise, which will find broad potential applications in quantum networks and quantum information processing with hybrid quantum systems.","lang":"eng"}],"author":[{"full_name":"Fan, Zhi Yuan","last_name":"Fan","first_name":"Zhi Yuan"},{"id":"45e99c0d-1eb1-11eb-9b96-ed8ab2983cac","first_name":"Liu","orcid":"0000-0003-4345-4267","full_name":"Qiu, Liu","last_name":"Qiu"},{"first_name":"Simon","last_name":"Gröblacher","full_name":"Gröblacher, Simon"},{"last_name":"Li","full_name":"Li, Jie","first_name":"Jie"}],"title":"Microwave-optics entanglement via cavity optomagnomechanics","publication":"Laser and Photonics Reviews","arxiv":1,"date_updated":"2025-09-09T13:13:18Z","publication_status":"published","day":"01","article_processing_charge":"No","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2208.10703"}],"quality_controlled":"1","month":"12","external_id":{"isi":["001088860000001"],"arxiv":["2208.10703"]},"volume":17,"language":[{"iso":"eng"}],"oa_version":"Preprint","intvolume":"        17","type":"journal_article","date_published":"2023-12-01T00:00:00Z","status":"public","department":[{"_id":"JoFi"}],"doi":"10.1002/lpor.202200866","scopus_import":"1"},{"article_processing_charge":"No","day":"11","publication_status":"published","date_updated":"2026-04-07T13:29:44Z","arxiv":1,"page":"603-613","abstract":[{"lang":"eng","text":"Payment channel networks (PCNs) are a promising solution to the scalability problem of cryptocurrencies. Any two users connected by a payment channel in the network can theoretically send an unbounded number of instant, costless transactions between them. Users who are not directly connected can also transact with each other in a multi-hop fashion. In this work, we study the incentive structure behind the creation of payment channel networks, particularly from the point of view of a single user that wants to join the network. We define a utility function for a new user in terms of expected revenue, expected fees, and the cost of creating channels, and then provide constant factor approximation algorithms that optimise the utility function given a certain budget. Additionally, we take a step back from a single user to the whole network and examine the parameter spaces under which simple graph topologies form a Nash equilibrium."}],"publication":"43rd International Conference on Distributed Computing Systems","title":"Lightning creation games","author":[{"first_name":"Zeta","full_name":"Avarikioti, Zeta","last_name":"Avarikioti"},{"first_name":"Tomasz","full_name":"Lizurej, Tomasz","last_name":"Lizurej"},{"first_name":"Tomasz","last_name":"Michalak","full_name":"Michalak, Tomasz"},{"full_name":"Yeo, Michelle X","last_name":"Yeo","first_name":"Michelle X","id":"2D82B818-F248-11E8-B48F-1D18A9856A87","orcid":"0009-0001-3676-4809"}],"publication_identifier":{"eissn":["2575-8411"],"isbn":["9798350339864"]},"_id":"14490","conference":{"start_date":"2023-07-18","end_date":"2023-07-21","location":"Hong Kong, China","name":"ICDCS: International Conference on Distributed Computing Systems"},"year":"2023","citation":{"ieee":"Z. Avarikioti, T. Lizurej, T. Michalak, and M. X. Yeo, “Lightning creation games,” in <i>43rd International Conference on Distributed Computing Systems</i>, Hong Kong, China, 2023, vol. 2023, pp. 603–613.","ista":"Avarikioti Z, Lizurej T, Michalak T, Yeo MX. 2023. Lightning creation games. 43rd International Conference on Distributed Computing Systems. ICDCS: International Conference on Distributed Computing Systems vol. 2023, 603–613.","apa":"Avarikioti, Z., Lizurej, T., Michalak, T., &#38; Yeo, M. X. (2023). Lightning creation games. In <i>43rd International Conference on Distributed Computing Systems</i> (Vol. 2023, pp. 603–613). Hong Kong, China: IEEE. <a href=\"https://doi.org/10.1109/ICDCS57875.2023.00037\">https://doi.org/10.1109/ICDCS57875.2023.00037</a>","mla":"Avarikioti, Zeta, et al. “Lightning Creation Games.” <i>43rd International Conference on Distributed Computing Systems</i>, vol. 2023, IEEE, 2023, pp. 603–13, doi:<a href=\"https://doi.org/10.1109/ICDCS57875.2023.00037\">10.1109/ICDCS57875.2023.00037</a>.","ama":"Avarikioti Z, Lizurej T, Michalak T, Yeo MX. Lightning creation games. In: <i>43rd International Conference on Distributed Computing Systems</i>. Vol 2023. IEEE; 2023:603-613. doi:<a href=\"https://doi.org/10.1109/ICDCS57875.2023.00037\">10.1109/ICDCS57875.2023.00037</a>","short":"Z. Avarikioti, T. Lizurej, T. Michalak, M.X. Yeo, in:, 43rd International Conference on Distributed Computing Systems, IEEE, 2023, pp. 603–613.","chicago":"Avarikioti, Zeta, Tomasz Lizurej, Tomasz Michalak, and Michelle X Yeo. “Lightning Creation Games.” In <i>43rd International Conference on Distributed Computing Systems</i>, 2023:603–13. IEEE, 2023. <a href=\"https://doi.org/10.1109/ICDCS57875.2023.00037\">https://doi.org/10.1109/ICDCS57875.2023.00037</a>."},"oa":1,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","date_created":"2023-11-05T23:00:54Z","publisher":"IEEE","isi":1,"fulldoi":"https://doi.org/10.1109/ICDCS57875.2023.00037","acknowledgement":"The work was partially supported by the Austrian Science Fund (FWF) through the project CoRaF (grant 2020388). It was also partially supported by NCN Grant 2019/35/B/ST6/04138 and ERC Grant 885666.","scopus_import":"1","related_material":{"record":[{"id":"14506","relation":"dissertation_contains","status":"public"}]},"doi":"10.1109/ICDCS57875.2023.00037","status":"public","department":[{"_id":"KrPi"}],"oa_version":"Preprint","type":"conference","date_published":"2023-10-11T00:00:00Z","intvolume":"      2023","language":[{"iso":"eng"}],"external_id":{"isi":["001081242600053"],"arxiv":["2306.16006"]},"volume":2023,"month":"10","quality_controlled":"1","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2306.16006"}]},{"article_processing_charge":"No","day":"03","doi":"10.5281/ZENODO.8402426","date_updated":"2025-09-09T13:15:39Z","related_material":{"record":[{"id":"14487","relation":"used_in_publication","status":"public"}]},"has_accepted_license":"1","abstract":[{"text":"We provide i) gridded initial conditions (.tif), ii) modeled gridded monthly outputs (.tif), and iii) modeled hourly outputs at the station locations (.txt) for the hydrological year 2019. Information about the variables and units can be found in the figures (.png) associated to each dataset. Details about the datasets can be found in the original publication by Buri and others (2023).\r\n\r\nBuri, P., Fatichi, S., Shaw, T. E., Miles, E. S., McCarthy, M. J., Fyffe, C. L., ... & Pellicciotti, F. (2023). Land Surface Modeling in the Himalayas: On the Importance of Evaporative Fluxes for the Water Balance of a High‐Elevation Catchment. Water Resources Research, 59(10), e2022WR033841. DOI: 10.1029/2022WR033841","lang":"eng"}],"status":"public","title":"Model output data to \"Land surface modeling in the Himalayas: on the importance of evaporative fluxes for the water balance of a high elevation catchment\"","author":[{"first_name":"Pascal","full_name":"Buri, Pascal","last_name":"Buri"},{"last_name":"Fatichi","full_name":"Fatichi, Simone","first_name":"Simone"},{"full_name":"Shaw, Thomas","last_name":"Shaw","first_name":"Thomas","id":"3caa3f91-1f03-11ee-96ce-e0e553054d6e","orcid":"0000-0001-7640-6152"},{"full_name":"Miles, Evan ","last_name":"Miles","first_name":"Evan "},{"last_name":"McCarthy","full_name":"McCarthy, Michael","id":"22a2674a-61ce-11ee-94b5-d18813baf16f","first_name":"Michael"},{"full_name":"Fyffe, Catriona Louise","last_name":"Fyffe","first_name":"Catriona Louise","id":"001b0422-8d15-11ed-bc51-cab6c037a228"},{"first_name":"Stefan","full_name":"Fugger, Stefan","last_name":"Fugger"},{"first_name":"Shaoting","full_name":"Ren, Shaoting","last_name":"Ren"},{"last_name":"Kneib","full_name":"Kneib, Marin","first_name":"Marin"},{"first_name":"Achille","full_name":"Jouberton, Achille","last_name":"Jouberton"},{"first_name":"Jakob","last_name":"Steiner","full_name":"Steiner, Jakob"},{"last_name":"Fujita","full_name":"Fujita, Koji","first_name":"Koji"},{"full_name":"Pellicciotti, Francesca","last_name":"Pellicciotti","orcid":"0000-0002-5554-8087","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","first_name":"Francesca"}],"department":[{"_id":"FrPe"}],"_id":"14494","year":"2023","oa_version":"Published Version","citation":{"ieee":"P. Buri <i>et al.</i>, “Model output data to ‘Land surface modeling in the Himalayas: on the importance of evaporative fluxes for the water balance of a high elevation catchment.’” Zenodo, 2023.","ista":"Buri P, Fatichi S, Shaw T, Miles E, McCarthy M, Fyffe CL, Fugger S, Ren S, Kneib M, Jouberton A, Steiner J, Fujita K, Pellicciotti F. 2023. Model output data to ‘Land surface modeling in the Himalayas: on the importance of evaporative fluxes for the water balance of a high elevation catchment’, Zenodo, <a href=\"https://doi.org/10.5281/ZENODO.8402426\">10.5281/ZENODO.8402426</a>.","mla":"Buri, Pascal, et al. <i>Model Output Data to “Land Surface Modeling in the Himalayas: On the Importance of Evaporative Fluxes for the Water Balance of a High Elevation Catchment.”</i> Zenodo, 2023, doi:<a href=\"https://doi.org/10.5281/ZENODO.8402426\">10.5281/ZENODO.8402426</a>.","ama":"Buri P, Fatichi S, Shaw T, et al. Model output data to “Land surface modeling in the Himalayas: on the importance of evaporative fluxes for the water balance of a high elevation catchment.” 2023. doi:<a href=\"https://doi.org/10.5281/ZENODO.8402426\">10.5281/ZENODO.8402426</a>","apa":"Buri, P., Fatichi, S., Shaw, T., Miles, E., McCarthy, M., Fyffe, C. L., … Pellicciotti, F. (2023). Model output data to “Land surface modeling in the Himalayas: on the importance of evaporative fluxes for the water balance of a high elevation catchment.” Zenodo. <a href=\"https://doi.org/10.5281/ZENODO.8402426\">https://doi.org/10.5281/ZENODO.8402426</a>","short":"P. Buri, S. Fatichi, T. Shaw, E. Miles, M. McCarthy, C.L. Fyffe, S. Fugger, S. Ren, M. Kneib, A. Jouberton, J. Steiner, K. Fujita, F. Pellicciotti, (2023).","chicago":"Buri, Pascal, Simone Fatichi, Thomas Shaw, Evan  Miles, Michael McCarthy, Catriona Louise Fyffe, Stefan Fugger, et al. “Model Output Data to ‘Land Surface Modeling in the Himalayas: On the Importance of Evaporative Fluxes for the Water Balance of a High Elevation Catchment.’” Zenodo, 2023. <a href=\"https://doi.org/10.5281/ZENODO.8402426\">https://doi.org/10.5281/ZENODO.8402426</a>."},"date_published":"2023-10-03T00:00:00Z","oa":1,"type":"research_data_reference","license":"https://creativecommons.org/publicdomain/zero/1.0/","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"Zenodo","month":"10","date_created":"2023-11-07T08:01:39Z","ddc":["550"],"fulldoi":"https://doi.org/10.5281/ZENODO.8402426","tmp":{"short":"CC0 (1.0)","legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","name":"Creative Commons Public Domain Dedication (CC0 1.0)","image":"/images/cc_0.png"},"main_file_link":[{"open_access":"1","url":"https://10.5281/ZENODO.8402426"}]},{"file_date_updated":"2023-11-07T09:16:23Z","citation":{"chicago":"Kwan, Matthew Alan, Ashwin Sah, Lisa Sauermann, and Mehtaab Sawhney. “Anticoncentration in Ramsey Graphs and a Proof of the Erdős–McKay Conjecture.” <i>Forum of Mathematics, Pi</i>. Cambridge University Press, 2023. <a href=\"https://doi.org/10.1017/fmp.2023.17\">https://doi.org/10.1017/fmp.2023.17</a>.","short":"M.A. Kwan, A. Sah, L. Sauermann, M. Sawhney, Forum of Mathematics, Pi 11 (2023).","ieee":"M. A. Kwan, A. Sah, L. Sauermann, and M. Sawhney, “Anticoncentration in Ramsey graphs and a proof of the Erdős–McKay conjecture,” <i>Forum of Mathematics, Pi</i>, vol. 11. Cambridge University Press, 2023.","ista":"Kwan MA, Sah A, Sauermann L, Sawhney M. 2023. Anticoncentration in Ramsey graphs and a proof of the Erdős–McKay conjecture. Forum of Mathematics, Pi. 11, e21.","apa":"Kwan, M. A., Sah, A., Sauermann, L., &#38; Sawhney, M. (2023). Anticoncentration in Ramsey graphs and a proof of the Erdős–McKay conjecture. <i>Forum of Mathematics, Pi</i>. Cambridge University Press. <a href=\"https://doi.org/10.1017/fmp.2023.17\">https://doi.org/10.1017/fmp.2023.17</a>","ama":"Kwan MA, Sah A, Sauermann L, Sawhney M. Anticoncentration in Ramsey graphs and a proof of the Erdős–McKay conjecture. <i>Forum of Mathematics, Pi</i>. 2023;11. doi:<a href=\"https://doi.org/10.1017/fmp.2023.17\">10.1017/fmp.2023.17</a>","mla":"Kwan, Matthew Alan, et al. “Anticoncentration in Ramsey Graphs and a Proof of the Erdős–McKay Conjecture.” <i>Forum of Mathematics, Pi</i>, vol. 11, e21, Cambridge University Press, 2023, doi:<a href=\"https://doi.org/10.1017/fmp.2023.17\">10.1017/fmp.2023.17</a>."},"oa":1,"article_number":"e21","article_type":"original","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","date_created":"2023-11-07T09:02:48Z","isi":1,"publisher":"Cambridge University Press","fulldoi":"https://doi.org/10.1017/fmp.2023.17","acknowledgement":"Kwan was supported for part of this work by ERC Starting Grant ‘RANDSTRUCT’ No. 101076777. Sah and Sawhney were supported by NSF Graduate Research Fellowship Program DGE-2141064. Sah was supported by the PD Soros Fellowship. Sauermann was supported by NSF Award DMS-2100157, and for part of this work by a Sloan Research Fellowship.","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"day":"24","article_processing_charge":"Yes","publication_status":"published","arxiv":1,"date_updated":"2025-09-09T13:16:15Z","abstract":[{"lang":"eng","text":"An n-vertex graph is called C-Ramsey if it has no clique or independent set of size Clog2n (i.e., if it has near-optimal Ramsey behavior). In this paper, we study edge statistics in Ramsey graphs, in particular obtaining very precise control of the distribution of the number of edges in a random vertex subset of a C-Ramsey graph. This brings together two ongoing lines of research: the study of ‘random-like’ properties of Ramsey graphs and the study of small-ball probability for low-degree polynomials of independent random variables.\r\n\r\nThe proof proceeds via an ‘additive structure’ dichotomy on the degree sequence and involves a wide range of different tools from Fourier analysis, random matrix theory, the theory of Boolean functions, probabilistic combinatorics and low-rank approximation. In particular, a key ingredient is a new sharpened version of the quadratic Carbery–Wright theorem on small-ball probability for polynomials of Gaussians, which we believe is of independent interest. One of the consequences of our result is the resolution of an old conjecture of Erdős and McKay, for which Erdős reiterated in several of his open problem collections and for which he offered one of his notorious monetary prizes."}],"title":"Anticoncentration in Ramsey graphs and a proof of the Erdős–McKay conjecture","publication":"Forum of Mathematics, Pi","author":[{"id":"5fca0887-a1db-11eb-95d1-ca9d5e0453b3","first_name":"Matthew Alan","orcid":"0000-0002-4003-7567","full_name":"Kwan, Matthew Alan","last_name":"Kwan"},{"full_name":"Sah, Ashwin","last_name":"Sah","first_name":"Ashwin"},{"first_name":"Lisa","full_name":"Sauermann, Lisa","last_name":"Sauermann"},{"full_name":"Sawhney, Mehtaab","last_name":"Sawhney","first_name":"Mehtaab"}],"publication_identifier":{"issn":["2050-5086"]},"year":"2023","_id":"14499","oa_version":"Published Version","date_published":"2023-08-24T00:00:00Z","type":"journal_article","intvolume":"        11","language":[{"iso":"eng"}],"keyword":["Discrete Mathematics and Combinatorics","Geometry and Topology","Mathematical Physics","Statistics and Probability","Algebra and Number Theory","Analysis"],"volume":11,"external_id":{"arxiv":["2208.02874"],"isi":["001123866200001"]},"month":"08","file":[{"date_updated":"2023-11-07T09:16:23Z","file_name":"2023_ForumMathematics_Kwan.pdf","content_type":"application/pdf","checksum":"54b824098d59073cc87a308d458b0a3e","creator":"dernst","file_size":1218719,"relation":"main_file","success":1,"file_id":"14500","access_level":"open_access","date_created":"2023-11-07T09:16:23Z"}],"ddc":["510"],"quality_controlled":"1","scopus_import":"1","doi":"10.1017/fmp.2023.17","status":"public","has_accepted_license":"1","department":[{"_id":"MaKw"}],"project":[{"grant_number":"101076777","_id":"bd95085b-d553-11ed-ba76-e55d3349be45","name":"Randomness and structure in combinatorics"}],"corr_author":"1"},{"month":"11","ddc":["000"],"file":[{"creator":"cchlebak","checksum":"521c72818d720a52b377207b2ee87b6a","content_type":"application/x-zip-compressed","file_name":"thesis_yeo.zip","date_updated":"2023-11-23T10:29:55Z","date_created":"2023-11-23T10:29:55Z","access_level":"closed","file_id":"14598","relation":"source_file","file_size":3037720},{"date_created":"2023-11-23T10:30:08Z","success":1,"file_id":"14599","access_level":"open_access","relation":"main_file","file_size":2717256,"checksum":"0ed5d16899687aecf13d843c9878c9f2","creator":"cchlebak","content_type":"application/pdf","file_name":"thesis_yeo.pdf","date_updated":"2023-11-23T10:30:08Z"}],"date_published":"2023-11-10T00:00:00Z","type":"dissertation","degree_awarded":"PhD","oa_version":"Published Version","language":[{"iso":"eng"}],"project":[{"call_identifier":"H2020","grant_number":"665385","name":"International IST Doctoral Program","_id":"2564DBCA-B435-11E9-9278-68D0E5697425"}],"OA_place":"publisher","department":[{"_id":"GradSch"},{"_id":"KrPi"}],"has_accepted_license":"1","status":"public","corr_author":"1","doi":"10.15479/14506","related_material":{"record":[{"status":"deleted","id":"13238","relation":"part_of_dissertation"},{"status":"public","id":"9969","relation":"part_of_dissertation"},{"relation":"part_of_dissertation","id":"14490","status":"public"}]},"publisher":"Institute of Science and Technology Austria","date_created":"2023-11-10T08:10:43Z","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","fulldoi":"https://doi.org/10.15479/14506","oa":1,"citation":{"chicago":"Yeo, Michelle X. “Advances in Efficiency and Privacy in Payment Channel Network Analysis.” Institute of Science and Technology Austria, 2023. <a href=\"https://doi.org/10.15479/14506\">https://doi.org/10.15479/14506</a>.","short":"M.X. Yeo, Advances in Efficiency and Privacy in Payment Channel Network Analysis, Institute of Science and Technology Austria, 2023.","apa":"Yeo, M. X. (2023). <i>Advances in efficiency and privacy in payment channel network analysis</i>. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/14506\">https://doi.org/10.15479/14506</a>","mla":"Yeo, Michelle X. <i>Advances in Efficiency and Privacy in Payment Channel Network Analysis</i>. Institute of Science and Technology Austria, 2023, doi:<a href=\"https://doi.org/10.15479/14506\">10.15479/14506</a>.","ama":"Yeo MX. Advances in efficiency and privacy in payment channel network analysis. 2023. doi:<a href=\"https://doi.org/10.15479/14506\">10.15479/14506</a>","ista":"Yeo MX. 2023. Advances in efficiency and privacy in payment channel network analysis. Institute of Science and Technology Austria.","ieee":"M. X. Yeo, “Advances in efficiency and privacy in payment channel network analysis,” Institute of Science and Technology Austria, 2023."},"file_date_updated":"2023-11-23T10:30:08Z","title":"Advances in efficiency and privacy in payment channel network analysis","author":[{"full_name":"Yeo, Michelle X","last_name":"Yeo","orcid":"0009-0001-3676-4809","first_name":"Michelle X","id":"2D82B818-F248-11E8-B48F-1D18A9856A87"}],"abstract":[{"lang":"eng","text":"Payment channel networks are a promising approach to improve the scalability bottleneck\r\nof cryptocurrencies. Two design principles behind payment channel networks are\r\nefficiency and privacy. Payment channel networks improve efficiency by allowing users\r\nto transact in a peer-to-peer fashion along multi-hop routes in the network, avoiding\r\nthe lengthy process of consensus on the blockchain. Transacting over payment channel\r\nnetworks also improves privacy as these transactions are not broadcast to the blockchain.\r\nDespite the influx of recent protocols built on top of payment channel networks and\r\ntheir analysis, a common shortcoming of many of these protocols is that they typically\r\nfocus only on either improving efficiency or privacy, but not both. Another limitation\r\non the efficiency front is that the models used to model actions, costs and utilities of\r\nusers are limited or come with unrealistic assumptions.\r\nThis thesis aims to address some of the shortcomings of recent protocols and algorithms\r\non payment channel networks, particularly in their privacy and efficiency aspects. We\r\nfirst present a payment route discovery protocol based on hub labelling and private\r\ninformation retrieval that hides the route query and is also efficient. We then present\r\na rebalancing protocol that formulates the rebalancing problem as a linear program\r\nand solves the linear program using multiparty computation so as to hide the channel\r\nbalances. The rebalancing solution as output by our protocol is also globally optimal.\r\nWe go on to develop more realistic models of the action space, costs, and utilities of\r\nboth existing and new users that want to join the network. In each of these settings,\r\nwe also develop algorithms to optimise the utility of these users with good guarantees\r\non the approximation and competitive ratios."}],"page":"162","year":"2023","_id":"14506","alternative_title":["ISTA Thesis"],"publication_identifier":{"issn":["2663-337X"]},"publication_status":"published","day":"10","article_processing_charge":"No","ec_funded":1,"supervisor":[{"orcid":"0000-0002-9139-1654","id":"3E04A7AA-F248-11E8-B48F-1D18A9856A87","first_name":"Krzysztof Z","full_name":"Pietrzak, Krzysztof Z","last_name":"Pietrzak"}],"date_updated":"2026-04-07T13:29:45Z"},{"doi":"10.1016/j.physrep.2023.10.004","scopus_import":"1","status":"public","project":[{"_id":"260C2330-B435-11E9-9278-68D0E5697425","grant_number":"754411","name":"ISTplus - Postdoctoral Fellowships","call_identifier":"H2020"}],"department":[{"_id":"MiLe"}],"volume":1042,"external_id":{"isi":["001109871200001"],"arxiv":["2202.11071"]},"language":[{"iso":"eng"}],"oa_version":"Preprint","intvolume":"      1042","type":"journal_article","date_published":"2023-11-29T00:00:00Z","quality_controlled":"1","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2202.11071"}],"month":"11","arxiv":1,"date_updated":"2025-09-09T13:16:58Z","ec_funded":1,"publication_status":"published","article_processing_charge":"No","day":"29","publication_identifier":{"issn":["0370-1573"]},"_id":"14513","year":"2023","abstract":[{"lang":"eng","text":"Cold atomic gases have become a paradigmatic system for exploring fundamental physics, which at the same time allows for applications in quantum technologies. The accelerating developments in the field have led to a highly advanced set of engineering techniques that, for example, can tune interactions, shape the external geometry, select among a large set of atomic species with different properties, or control the number of atoms. In particular, it is possible to operate in lower dimensions and drive atomic systems into the strongly correlated regime. In this review, we discuss recent advances in few-body cold atom systems confined in low dimensions from a theoretical viewpoint. We mainly focus on bosonic systems in one dimension and provide an introduction to the static properties before we review the state-of-the-art research into quantum dynamical processes stimulated by the presence of correlations. Besides discussing the fundamental physical phenomena arising in these systems, we also provide an overview of the calculational and numerical tools and methods that are commonly used, thus delivering a balanced and comprehensive overview of the field. We conclude by giving an outlook on possible future directions that are interesting to explore in these correlated systems."}],"page":"1-108","title":"Few-body Bose gases in low dimensions - A laboratory for quantum dynamics","publication":"Physics Reports","author":[{"last_name":"Mistakidis","full_name":"Mistakidis, S. I.","first_name":"S. I."},{"orcid":"0000-0003-0393-5525","first_name":"Artem","id":"37D278BC-F248-11E8-B48F-1D18A9856A87","last_name":"Volosniev","full_name":"Volosniev, Artem"},{"full_name":"Barfknecht, R. E.","last_name":"Barfknecht","first_name":"R. E."},{"last_name":"Fogarty","full_name":"Fogarty, T.","first_name":"T."},{"first_name":"Th","full_name":"Busch, Th","last_name":"Busch"},{"last_name":"Foerster","full_name":"Foerster, A.","first_name":"A."},{"first_name":"P.","last_name":"Schmelcher","full_name":"Schmelcher, P."},{"full_name":"Zinner, N. T.","last_name":"Zinner","first_name":"N. T."}],"article_type":"original","citation":{"ieee":"S. I. Mistakidis <i>et al.</i>, “Few-body Bose gases in low dimensions - A laboratory for quantum dynamics,” <i>Physics Reports</i>, vol. 1042. Elsevier, pp. 1–108, 2023.","ama":"Mistakidis SI, Volosniev A, Barfknecht RE, et al. Few-body Bose gases in low dimensions - A laboratory for quantum dynamics. <i>Physics Reports</i>. 2023;1042:1-108. doi:<a href=\"https://doi.org/10.1016/j.physrep.2023.10.004\">10.1016/j.physrep.2023.10.004</a>","apa":"Mistakidis, S. I., Volosniev, A., Barfknecht, R. E., Fogarty, T., Busch, T., Foerster, A., … Zinner, N. T. (2023). Few-body Bose gases in low dimensions - A laboratory for quantum dynamics. <i>Physics Reports</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.physrep.2023.10.004\">https://doi.org/10.1016/j.physrep.2023.10.004</a>","mla":"Mistakidis, S. I., et al. “Few-Body Bose Gases in Low Dimensions - A Laboratory for Quantum Dynamics.” <i>Physics Reports</i>, vol. 1042, Elsevier, 2023, pp. 1–108, doi:<a href=\"https://doi.org/10.1016/j.physrep.2023.10.004\">10.1016/j.physrep.2023.10.004</a>.","ista":"Mistakidis SI, Volosniev A, Barfknecht RE, Fogarty T, Busch T, Foerster A, Schmelcher P, Zinner NT. 2023. Few-body Bose gases in low dimensions - A laboratory for quantum dynamics. Physics Reports. 1042, 1–108.","chicago":"Mistakidis, S. I., Artem Volosniev, R. E. Barfknecht, T. Fogarty, Th Busch, A. Foerster, P. Schmelcher, and N. T. Zinner. “Few-Body Bose Gases in Low Dimensions - A Laboratory for Quantum Dynamics.” <i>Physics Reports</i>. Elsevier, 2023. <a href=\"https://doi.org/10.1016/j.physrep.2023.10.004\">https://doi.org/10.1016/j.physrep.2023.10.004</a>.","short":"S.I. Mistakidis, A. Volosniev, R.E. Barfknecht, T. Fogarty, T. Busch, A. Foerster, P. Schmelcher, N.T. Zinner, Physics Reports 1042 (2023) 1–108."},"oa":1,"fulldoi":"https://doi.org/10.1016/j.physrep.2023.10.004","acknowledgement":"This review could not have been written without the many fruitful discussions and great collaborations with colleagues throughout the years, there are too many to mention. Here we acknowledge conversations regarding the context of the review with Joachim Brand, Fabian Brauneis, Adolfo del Campo, Alberto Cappellaro, Panagiotis Giannakeas, Tommaso Macrí, Oleksandr Marchukov, Lukas Rammelmüller and Manuel Valiente. S. I. M. acknowledges support from the NSF through a grant for ITAMP at Harvard University. T.F. acknowledges support from JSPS KAKENHI Grant Number JP23K03290 and T.F. and Th.B. acknowledge support from the Okinawa Institute for Science and Technology Graduate University, and JST Grant Number JPMJPF2221. A.F. and R. E. B. acknowledge support from CNPq (Conselho Nacional de Desenvolvimento Científico e Tecnológico) - Edital Universal 406563/2021-7. A. G. V. acknowledges support by European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 754411. P. S. is supported by the Cluster of Excellence ‘Advanced Imaging of Matter’ of the Deutsche Forschungsgemeinschaft (DFG) - EXC2056 - project ID 390715994. N. T. Z. is partially supported by the Independent Research Fund Denmark .","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","isi":1,"publisher":"Elsevier","date_created":"2023-11-12T23:00:54Z"},{"department":[{"_id":"GaTk"}],"has_accepted_license":"1","status":"public","scopus_import":"1","doi":"10.1103/PhysRevX.13.041017","month":"10","quality_controlled":"1","file":[{"content_type":"application/pdf","creator":"dernst","checksum":"32574aeebcca7347a4152c611b66b3d5","date_updated":"2023-11-13T09:00:19Z","file_name":"2023_PhysReviewX_Reinhardt.pdf","access_level":"open_access","success":1,"file_id":"14522","date_created":"2023-11-13T09:00:19Z","file_size":1595223,"relation":"main_file"}],"ddc":["530"],"date_published":"2023-10-26T00:00:00Z","type":"journal_article","intvolume":"        13","oa_version":"Published Version","language":[{"iso":"eng"}],"volume":13,"external_id":{"isi":["001122894200001"],"arxiv":["2203.03461"]},"publication":"Physical Review X","title":"Path weight sampling: Exact Monte Carlo computation of the mutual information between stochastic trajectories","author":[{"full_name":"Reinhardt, Manuel","last_name":"Reinhardt","first_name":"Manuel"},{"last_name":"Tkačik","full_name":"Tkačik, Gašper","orcid":"0000-0002-6699-1455","id":"3D494DCA-F248-11E8-B48F-1D18A9856A87","first_name":"Gašper"},{"first_name":"Pieter Rein","full_name":"Ten Wolde, Pieter Rein","last_name":"Ten Wolde"}],"abstract":[{"text":"Most natural and engineered information-processing systems transmit information via signals that vary in time. Computing the information transmission rate or the information encoded in the temporal characteristics of these signals requires the mutual information between the input and output signals as a function of time, i.e., between the input and output trajectories. Yet, this is notoriously difficult because of the high-dimensional nature of the trajectory space, and all existing techniques require approximations. We present an exact Monte Carlo technique called path weight sampling (PWS) that, for the first time, makes it possible to compute the mutual information between input and output trajectories for any stochastic system that is described by a master equation. The principal idea is to use the master equation to evaluate the exact conditional probability of an individual output trajectory for a given input trajectory and average this via Monte Carlo sampling in trajectory space to obtain the mutual information. We present three variants of PWS, which all generate the trajectories using the standard stochastic simulation algorithm. While direct PWS is a brute-force method, Rosenbluth-Rosenbluth PWS exploits the analogy between signal trajectory sampling and polymer sampling, and thermodynamic integration PWS is based on a reversible work calculation in trajectory space. PWS also makes it possible to compute the mutual information between input and output trajectories for systems with hidden internal states as well as systems with feedback from output to input. Applying PWS to the bacterial chemotaxis system, consisting of 182 coupled chemical reactions, demonstrates not only that the scheme is highly efficient but also that the number of receptor clusters is much smaller than hitherto believed, while their size is much larger.","lang":"eng"}],"_id":"14515","year":"2023","publication_identifier":{"eissn":["2160-3308"]},"article_processing_charge":"Yes","day":"26","publication_status":"published","arxiv":1,"date_updated":"2025-09-09T13:18:24Z","date_created":"2023-11-12T23:00:55Z","publisher":"American Physical Society","isi":1,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"fulldoi":"https://doi.org/10.1103/PhysRevX.13.041017","acknowledgement":"We thank Bela Mulder, Tom Shimizu, Fotios Avgidis, Peter Bolhuis, and Daan Frenkel for useful discussions and a careful reading of the manuscript, and we thank Age Tjalma for support with obtaining the Gaussian approximation of the chemotaxis system. This work is part of the Dutch Research Council (NWO) and was performed at the research institute AMOLF. This project has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation program (Grant Agreement No. 885065) and was\r\nfinancially supported by NWO through the “Building a Synthetic Cell (BaSyC)” Gravitation Grant (024.003.019).","oa":1,"article_number":"041017","file_date_updated":"2023-11-13T09:00:19Z","citation":{"short":"M. Reinhardt, G. Tkačik, P.R. Ten Wolde, Physical Review X 13 (2023).","chicago":"Reinhardt, Manuel, Gašper Tkačik, and Pieter Rein Ten Wolde. “Path Weight Sampling: Exact Monte Carlo Computation of the Mutual Information between Stochastic Trajectories.” <i>Physical Review X</i>. American Physical Society, 2023. <a href=\"https://doi.org/10.1103/PhysRevX.13.041017\">https://doi.org/10.1103/PhysRevX.13.041017</a>.","ieee":"M. Reinhardt, G. Tkačik, and P. R. Ten Wolde, “Path weight sampling: Exact Monte Carlo computation of the mutual information between stochastic trajectories,” <i>Physical Review X</i>, vol. 13, no. 4. American Physical Society, 2023.","ista":"Reinhardt M, Tkačik G, Ten Wolde PR. 2023. Path weight sampling: Exact Monte Carlo computation of the mutual information between stochastic trajectories. Physical Review X. 13(4), 041017.","mla":"Reinhardt, Manuel, et al. “Path Weight Sampling: Exact Monte Carlo Computation of the Mutual Information between Stochastic Trajectories.” <i>Physical Review X</i>, vol. 13, no. 4, 041017, American Physical Society, 2023, doi:<a href=\"https://doi.org/10.1103/PhysRevX.13.041017\">10.1103/PhysRevX.13.041017</a>.","ama":"Reinhardt M, Tkačik G, Ten Wolde PR. Path weight sampling: Exact Monte Carlo computation of the mutual information between stochastic trajectories. <i>Physical Review X</i>. 2023;13(4). doi:<a href=\"https://doi.org/10.1103/PhysRevX.13.041017\">10.1103/PhysRevX.13.041017</a>","apa":"Reinhardt, M., Tkačik, G., &#38; Ten Wolde, P. R. (2023). Path weight sampling: Exact Monte Carlo computation of the mutual information between stochastic trajectories. <i>Physical Review X</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevX.13.041017\">https://doi.org/10.1103/PhysRevX.13.041017</a>"},"article_type":"original","issue":"4"},{"abstract":[{"lang":"eng","text":"We revisit decentralized random beacons with a focus on practical distributed applications. Decentralized random beacons (Beaver and So, Eurocrypt'93) provide the functionality for n parties to generate an unpredictable sequence of bits in a way that cannot be biased, which is useful for any decentralized protocol requiring trusted randomness. Existing beacon constructions are highly inefficient in practical settings where protocol parties need to rejoin after crashes or disconnections, and more significantly where smart contracts may rely on arbitrary index points in high-volume streams. For this, we introduce a new notion of history-generating decentralized random beacons (HGDRBs). Roughly, the history-generation property of HGDRBs allows for previous beacon outputs to be efficiently generated knowing only the current value and the public key. At application layers, history-generation supports registering a sparser set of on-chain values if desired, so that apps like lotteries can utilize on-chain values without incurring high-frequency costs, enjoying all the benefits of DRBs implemented off-chain or with decoupled, special-purpose chains. Unlike rollups, HG is tailored specifically to recovering and verifying pseudorandom bit sequences and thus enjoys unique optimizations investigated in this work. We introduce STROBE: an efficient HGDRB construction which generalizes the original squaring-based RSA approach of Beaver and So. STROBE enjoys several useful properties that make it suited for practical applications that use beacons: 1) history-generating: it can regenerate and verify high-throughput beacon streams, supporting sparse (thus cost-effective) ledger entries; 2) concisely self-verifying: NIZK-free, with state and validation employing a single ring element; 3) eco-friendly: stake-based rather than work based; 4) unbounded: refresh-free, addressing limitations of Beaver and So; 5) delay-free: results are immediately available. 6) storage-efficient: the last beacon suffices to derive all past outputs, thus O(1) storage requirements for nodes serving the whole history."}],"title":"STROBE: Streaming Threshold Random Beacons","author":[{"first_name":"Donald","full_name":"Beaver, Donald","last_name":"Beaver"},{"first_name":"Mahimna","last_name":"Kelkar","full_name":"Kelkar, Mahimna"},{"full_name":"Lewi, Kevin","last_name":"Lewi","first_name":"Kevin"},{"full_name":"Nikolaenko, Valeria","last_name":"Nikolaenko","first_name":"Valeria"},{"first_name":"Alberto","full_name":"Sonnino, Alberto","last_name":"Sonnino"},{"last_name":"Chalkias","full_name":"Chalkias, Konstantinos","first_name":"Konstantinos"},{"first_name":"Eleftherios","id":"f5983044-d7ef-11ea-ac6d-fd1430a26d30","full_name":"Kokoris Kogias, Eleftherios","last_name":"Kokoris Kogias"},{"first_name":"Ladi De","last_name":"Naurois","full_name":"Naurois, Ladi De"},{"first_name":"Arnab","last_name":"Roy","full_name":"Roy, Arnab"}],"publication":"5th Conference on Advances in Financial Technologies","publication_identifier":{"issn":["1868-8969"],"isbn":["9783959773034"]},"alternative_title":["LIPIcs"],"year":"2023","_id":"14516","conference":{"location":"Princeton, NJ, United States","name":"AFT: Conference on Advances in Financial Technologies","end_date":"2023-10-25","start_date":"2023-10-23"},"article_processing_charge":"Yes","day":"01","publication_status":"published","date_updated":"2024-10-09T21:07:17Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_created":"2023-11-12T23:00:55Z","publisher":"Schloss Dagstuhl - Leibniz-Zentrum für Informatik","fulldoi":"https://doi.org/10.4230/LIPIcs.AFT.2023.7","acknowledgement":"Work done when all the authors were at Novi Research, Meta.","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"file_date_updated":"2023-11-13T08:44:34Z","citation":{"chicago":"Beaver, Donald, Mahimna Kelkar, Kevin Lewi, Valeria Nikolaenko, Alberto Sonnino, Konstantinos Chalkias, Eleftherios Kokoris Kogias, Ladi De Naurois, and Arnab Roy. “STROBE: Streaming Threshold Random Beacons.” In <i>5th Conference on Advances in Financial Technologies</i>, Vol. 282. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023. <a href=\"https://doi.org/10.4230/LIPIcs.AFT.2023.7\">https://doi.org/10.4230/LIPIcs.AFT.2023.7</a>.","short":"D. Beaver, M. Kelkar, K. Lewi, V. Nikolaenko, A. Sonnino, K. Chalkias, E. Kokoris Kogias, L.D. Naurois, A. Roy, in:, 5th Conference on Advances in Financial Technologies, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023.","ieee":"D. Beaver <i>et al.</i>, “STROBE: Streaming Threshold Random Beacons,” in <i>5th Conference on Advances in Financial Technologies</i>, Princeton, NJ, United States, 2023, vol. 282.","mla":"Beaver, Donald, et al. “STROBE: Streaming Threshold Random Beacons.” <i>5th Conference on Advances in Financial Technologies</i>, vol. 282, 7, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023, doi:<a href=\"https://doi.org/10.4230/LIPIcs.AFT.2023.7\">10.4230/LIPIcs.AFT.2023.7</a>.","apa":"Beaver, D., Kelkar, M., Lewi, K., Nikolaenko, V., Sonnino, A., Chalkias, K., … Roy, A. (2023). STROBE: Streaming Threshold Random Beacons. In <i>5th Conference on Advances in Financial Technologies</i> (Vol. 282). Princeton, NJ, United States: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. <a href=\"https://doi.org/10.4230/LIPIcs.AFT.2023.7\">https://doi.org/10.4230/LIPIcs.AFT.2023.7</a>","ama":"Beaver D, Kelkar M, Lewi K, et al. STROBE: Streaming Threshold Random Beacons. In: <i>5th Conference on Advances in Financial Technologies</i>. Vol 282. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2023. doi:<a href=\"https://doi.org/10.4230/LIPIcs.AFT.2023.7\">10.4230/LIPIcs.AFT.2023.7</a>","ista":"Beaver D, Kelkar M, Lewi K, Nikolaenko V, Sonnino A, Chalkias K, Kokoris Kogias E, Naurois LD, Roy A. 2023. STROBE: Streaming Threshold Random Beacons. 5th Conference on Advances in Financial Technologies. AFT: Conference on Advances in Financial Technologies, LIPIcs, vol. 282, 7."},"oa":1,"article_number":"7","has_accepted_license":"1","status":"public","department":[{"_id":"ElKo"}],"corr_author":"1","scopus_import":"1","doi":"10.4230/LIPIcs.AFT.2023.7","month":"10","file":[{"date_updated":"2023-11-13T08:44:34Z","file_name":"2023_LIPIcs_Beaver.pdf","content_type":"application/pdf","creator":"dernst","checksum":"c1f98831cb5149d6c030c41999e6e960","file_size":793495,"relation":"main_file","access_level":"open_access","file_id":"14521","success":1,"date_created":"2023-11-13T08:44:34Z"}],"ddc":["000"],"main_file_link":[{"url":"https://eprint.iacr.org/2021/1643","open_access":"1"}],"quality_controlled":"1","oa_version":"Published Version","type":"conference","date_published":"2023-10-01T00:00:00Z","intvolume":"       282","language":[{"iso":"eng"}],"volume":282},{"publication_status":"published","article_processing_charge":"No","day":"20","ec_funded":1,"arxiv":1,"date_updated":"2026-06-03T07:16:02Z","title":"Compact vacuum-gap transmon qubits: Selective and sensitive probes for superconductor surface losses","publication":"Physical Review Applied","author":[{"id":"2DCF8DE6-F248-11E8-B48F-1D18A9856A87","first_name":"Martin","orcid":"0009-0005-0878-3032","last_name":"Zemlicka","full_name":"Zemlicka, Martin"},{"last_name":"Redchenko","full_name":"Redchenko, Elena","id":"2C21D6E8-F248-11E8-B48F-1D18A9856A87","first_name":"Elena"},{"full_name":"Peruzzo, Matilda","last_name":"Peruzzo","id":"3F920B30-F248-11E8-B48F-1D18A9856A87","first_name":"Matilda","orcid":"0000-0002-3415-4628"},{"last_name":"Hassani","full_name":"Hassani, Farid","orcid":"0000-0001-6937-5773","id":"2AED110C-F248-11E8-B48F-1D18A9856A87","first_name":"Farid"},{"last_name":"Trioni","full_name":"Trioni, Andrea","id":"42F71B44-F248-11E8-B48F-1D18A9856A87","first_name":"Andrea"},{"orcid":"0000-0003-0415-1423","first_name":"Shabir","id":"2D25E1F6-F248-11E8-B48F-1D18A9856A87","last_name":"Barzanjeh","full_name":"Barzanjeh, Shabir"},{"first_name":"Johannes M","id":"4B591CBA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8112-028X","last_name":"Fink","full_name":"Fink, Johannes M"}],"abstract":[{"text":"State-of-the-art transmon qubits rely on large capacitors, which systematically improve their coherence due to reduced surface-loss participation. However, this approach increases both the footprint and the parasitic cross-coupling and is ultimately limited by radiation losses—a potential roadblock for scaling up quantum processors to millions of qubits. In this work we present transmon qubits with sizes as low as 36 × 39 µm2 with  100-nm-wide vacuum-gap capacitors that are micromachined from commercial silicon-on-insulator wafers and shadow evaporated with aluminum. We achieve a vacuum participation ratio up to 99.6% in an in-plane design that is compatible with standard coplanar circuits. Qubit relaxationtime measurements for small gaps with high zero-point electric field variance of up to 22 V/m reveal a double exponential decay indicating comparably strong qubit interaction with long-lived two-level systems. The exceptionally high selectivity of up to 20 dB to the superconductor-vacuum interface allows us to precisely back out the sub-single-photon dielectric loss tangent of aluminum oxide previously exposed to ambient conditions. In terms of future scaling potential, we achieve a ratio of qubit quality factor to a footprint area equal to 20 µm−2, which is comparable with the highest T1 devices relying on larger geometries, a value that could improve substantially for lower surface-loss superconductors. ","lang":"eng"}],"year":"2023","_id":"14517","publication_identifier":{"eissn":["2331-7019"]},"article_number":"044054","oa":1,"citation":{"chicago":"Zemlicka, Martin, Elena Redchenko, Matilda Peruzzo, Farid Hassani, Andrea Trioni, Shabir Barzanjeh, and Johannes M Fink. “Compact Vacuum-Gap Transmon Qubits: Selective and Sensitive Probes for Superconductor Surface Losses.” <i>Physical Review Applied</i>. American Physical Society, 2023. <a href=\"https://doi.org/10.1103/PhysRevApplied.20.044054\">https://doi.org/10.1103/PhysRevApplied.20.044054</a>.","short":"M. Zemlicka, E. Redchenko, M. Peruzzo, F. Hassani, A. Trioni, S. Barzanjeh, J.M. Fink, Physical Review Applied 20 (2023).","ieee":"M. Zemlicka <i>et al.</i>, “Compact vacuum-gap transmon qubits: Selective and sensitive probes for superconductor surface losses,” <i>Physical Review Applied</i>, vol. 20, no. 4. American Physical Society, 2023.","mla":"Zemlicka, Martin, et al. “Compact Vacuum-Gap Transmon Qubits: Selective and Sensitive Probes for Superconductor Surface Losses.” <i>Physical Review Applied</i>, vol. 20, no. 4, 044054, American Physical Society, 2023, doi:<a href=\"https://doi.org/10.1103/PhysRevApplied.20.044054\">10.1103/PhysRevApplied.20.044054</a>.","apa":"Zemlicka, M., Redchenko, E., Peruzzo, M., Hassani, F., Trioni, A., Barzanjeh, S., &#38; Fink, J. M. (2023). Compact vacuum-gap transmon qubits: Selective and sensitive probes for superconductor surface losses. <i>Physical Review Applied</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevApplied.20.044054\">https://doi.org/10.1103/PhysRevApplied.20.044054</a>","ama":"Zemlicka M, Redchenko E, Peruzzo M, et al. Compact vacuum-gap transmon qubits: Selective and sensitive probes for superconductor surface losses. <i>Physical Review Applied</i>. 2023;20(4). doi:<a href=\"https://doi.org/10.1103/PhysRevApplied.20.044054\">10.1103/PhysRevApplied.20.044054</a>","ista":"Zemlicka M, Redchenko E, Peruzzo M, Hassani F, Trioni A, Barzanjeh S, Fink JM. 2023. Compact vacuum-gap transmon qubits: Selective and sensitive probes for superconductor surface losses. Physical Review Applied. 20(4), 044054."},"issue":"4","article_type":"original","publisher":"American Physical Society","isi":1,"date_created":"2023-11-12T23:00:55Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","acknowledgement":"This work was supported by the Austrian Science Fund (FWF) through BeyondC (F7105), the European Research Council under Grant Agreement No. 758053 (ERC StG QUNNECT) and a NOMIS foundation research grant. M.Z. was the recipient of a SAIA scholarship, E.R. of\r\na DOC fellowship of the Austrian Academy of Sciences, and M.P. of a Pöttinger scholarship at IST Austria. S.B. acknowledges support from Marie Skłodowska Curie Program No. 707438 (MSC-IF SUPEREOM). J.M.F. acknowledges support from the Horizon Europe Program HORIZON-CL4-2022-QUANTUM-01-SGA via Project No. 101113946 OpenSuperQPlus100 and the ISTA Nanofabrication Facility.","fulldoi":"https://doi.org/10.1103/PhysRevApplied.20.044054","scopus_import":"1","doi":"10.1103/PhysRevApplied.20.044054","related_material":{"record":[{"id":"14520","relation":"research_data","status":"public"}]},"project":[{"call_identifier":"H2020","_id":"26336814-B435-11E9-9278-68D0E5697425","name":"A Fiber Optic Transceiver for Superconducting Qubits","grant_number":"758053"},{"_id":"eb9b30ac-77a9-11ec-83b8-871f581d53d2","name":"Protected states of quantum matter"},{"_id":"258047B6-B435-11E9-9278-68D0E5697425","name":"Microwave-to-Optical Quantum Link: Quantum Teleportation and Quantum Illumination with cavity Optomechanics","grant_number":"707438","call_identifier":"H2020"},{"_id":"bdb7cfc1-d553-11ed-ba76-d2eaab167738","name":"Open Superconducting Quantum Computers (OpenSuperQPlus)","grant_number":"101080139"},{"_id":"bdb108fd-d553-11ed-ba76-83dc74a9864f","grant_number":"F07105","name":"QUANTUM INFORMATION SYSTEMS BEYOND CLASSICAL CAPABILITIES / P5- Integration of Superconducting Quantum Circuits"}],"department":[{"_id":"JoFi"}],"status":"public","corr_author":"1","acknowledged_ssus":[{"_id":"NanoFab"}],"intvolume":"        20","type":"journal_article","date_published":"2023-10-20T00:00:00Z","oa_version":"Preprint","external_id":{"isi":["001095315600001"],"arxiv":["2206.14104"]},"volume":20,"language":[{"iso":"eng"}],"month":"10","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/2206.14104"}],"quality_controlled":"1"},{"scopus_import":"1","doi":"10.3233/FAIA230264","department":[{"_id":"ToHe"},{"_id":"KrCh"}],"project":[{"grant_number":"665385","_id":"2564DBCA-B435-11E9-9278-68D0E5697425","name":"International IST Doctoral Program","call_identifier":"H2020"},{"call_identifier":"H2020","name":"Formal Methods for Stochastic Models: Algorithms and Applications","grant_number":"863818","_id":"0599E47C-7A3F-11EA-A408-12923DDC885E"}],"has_accepted_license":"1","status":"public","corr_author":"1","type":"conference","date_published":"2023-09-28T00:00:00Z","intvolume":"       372","oa_version":"Published Version","language":[{"iso":"eng"}],"external_id":{"arxiv":["2307.15218"]},"volume":372,"month":"09","quality_controlled":"1","file":[{"file_name":"2023_FAIA_Avni.pdf","date_updated":"2023-11-13T10:16:10Z","checksum":"1390ca38480fa4cf286b0f1a42e8c12f","creator":"dernst","content_type":"application/pdf","relation":"main_file","file_size":501011,"date_created":"2023-11-13T10:16:10Z","file_id":"14529","success":1,"access_level":"open_access"}],"ddc":["000"],"day":"28","article_processing_charge":"No","publication_status":"published","ec_funded":1,"arxiv":1,"date_updated":"2025-03-31T16:01:09Z","author":[{"last_name":"Avni","full_name":"Avni, Guy","id":"463C8BC2-F248-11E8-B48F-1D18A9856A87","first_name":"Guy","orcid":"0000-0001-5588-8287"},{"last_name":"Meggendorfer","full_name":"Meggendorfer, Tobias","id":"b21b0c15-30a2-11eb-80dc-f13ca25802e1","first_name":"Tobias","orcid":"0000-0002-1712-2165"},{"first_name":"Suman","last_name":"Sadhukhan","full_name":"Sadhukhan, Suman"},{"last_name":"Tkadlec","full_name":"Tkadlec, Josef","orcid":"0000-0002-1097-9684","first_name":"Josef","id":"3F24CCC8-F248-11E8-B48F-1D18A9856A87"},{"orcid":"0000-0002-4681-1699","first_name":"Dorde","id":"294AA7A6-F248-11E8-B48F-1D18A9856A87","full_name":"Zikelic, Dorde","last_name":"Zikelic"}],"title":"Reachability poorman discrete-bidding games","publication":"Frontiers in Artificial Intelligence and Applications","page":"141-148","abstract":[{"lang":"eng","text":"We consider bidding games, a class of two-player zero-sum graph games. The game proceeds as follows. Both players have bounded budgets. A token is placed on a vertex of a graph, in each turn the players simultaneously submit bids, and the higher bidder moves the token, where we break bidding ties in favor of Player 1. Player 1 wins the game iff the token visits a designated target vertex. We consider, for the first time, poorman discrete-bidding in which the granularity of the bids is restricted and the higher bid is paid to the bank. Previous work either did not impose granularity restrictions or considered Richman bidding (bids are paid to the opponent). While the latter mechanisms are technically more accessible, the former is more appealing from a practical standpoint. Our study focuses on threshold budgets, which is the necessary and sufficient initial budget required for Player 1 to ensure winning against a given Player 2 budget. We first show existence of thresholds. In DAGs, we show that threshold budgets can be approximated with error bounds by thresholds under continuous-bidding and that they exhibit a periodic behavior. We identify closed-form solutions in special cases. We implement and experiment with an algorithm to find threshold budgets."}],"_id":"14518","conference":{"end_date":"2023-10-04","start_date":"2023-09-30","name":"ECAI: European Conference on Artificial Intelligence","location":"Krakow, Poland"},"year":"2023","publication_identifier":{"issn":["0922-6389"],"isbn":["9781643684369"]},"oa":1,"file_date_updated":"2023-11-13T10:16:10Z","citation":{"chicago":"Avni, Guy, Tobias Meggendorfer, Suman Sadhukhan, Josef Tkadlec, and Dorde Zikelic. “Reachability Poorman Discrete-Bidding Games.” In <i>Frontiers in Artificial Intelligence and Applications</i>, 372:141–48. IOS Press, 2023. <a href=\"https://doi.org/10.3233/FAIA230264\">https://doi.org/10.3233/FAIA230264</a>.","short":"G. Avni, T. Meggendorfer, S. Sadhukhan, J. Tkadlec, D. Zikelic, in:, Frontiers in Artificial Intelligence and Applications, IOS Press, 2023, pp. 141–148.","ieee":"G. Avni, T. Meggendorfer, S. Sadhukhan, J. Tkadlec, and D. Zikelic, “Reachability poorman discrete-bidding games,” in <i>Frontiers in Artificial Intelligence and Applications</i>, Krakow, Poland, 2023, vol. 372, pp. 141–148.","mla":"Avni, Guy, et al. “Reachability Poorman Discrete-Bidding Games.” <i>Frontiers in Artificial Intelligence and Applications</i>, vol. 372, IOS Press, 2023, pp. 141–48, doi:<a href=\"https://doi.org/10.3233/FAIA230264\">10.3233/FAIA230264</a>.","apa":"Avni, G., Meggendorfer, T., Sadhukhan, S., Tkadlec, J., &#38; Zikelic, D. (2023). Reachability poorman discrete-bidding games. In <i>Frontiers in Artificial Intelligence and Applications</i> (Vol. 372, pp. 141–148). Krakow, Poland: IOS Press. <a href=\"https://doi.org/10.3233/FAIA230264\">https://doi.org/10.3233/FAIA230264</a>","ama":"Avni G, Meggendorfer T, Sadhukhan S, Tkadlec J, Zikelic D. Reachability poorman discrete-bidding games. In: <i>Frontiers in Artificial Intelligence and Applications</i>. Vol 372. IOS Press; 2023:141-148. doi:<a href=\"https://doi.org/10.3233/FAIA230264\">10.3233/FAIA230264</a>","ista":"Avni G, Meggendorfer T, Sadhukhan S, Tkadlec J, Zikelic D. 2023. Reachability poorman discrete-bidding games. Frontiers in Artificial Intelligence and Applications. ECAI: European Conference on Artificial Intelligence vol. 372, 141–148."},"license":"https://creativecommons.org/licenses/by-nc/4.0/","date_created":"2023-11-12T23:00:56Z","publisher":"IOS Press","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","tmp":{"short":"CC BY-NC (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)","image":"/images/cc_by_nc.png"},"fulldoi":"https://doi.org/10.3233/FAIA230264","acknowledgement":"This research was supported in part by ISF grant no. 1679/21, ERC CoG 863818 (FoRM-SMArt) and the European Union’s Horizon 2020 research and innovation programme under the Marie SkłodowskaCurie Grant Agreement No. 665385."},{"article_processing_charge":"No","day":"08","related_material":{"record":[{"id":"14514","relation":"used_in_publication","status":"public"}]},"date_updated":"2025-09-09T13:19:07Z","doi":"10.5281/ZENODO.8329143","department":[{"_id":"ScWa"}],"author":[{"last_name":"Binysh","full_name":"Binysh, Jack","first_name":"Jack"},{"first_name":"Indrajit","full_name":"Chakraborty, Indrajit","last_name":"Chakraborty"},{"first_name":"Mykyta","last_name":"Chubynsky","full_name":"Chubynsky, Mykyta"},{"id":"b6798902-eea0-11ea-9cbc-a8e14286c631","first_name":"Vicente L","full_name":"Diaz Melian, Vicente L","last_name":"Diaz Melian"},{"orcid":"0000-0002-2299-3176","id":"3A1FFC16-F248-11E8-B48F-1D18A9856A87","first_name":"Scott R","full_name":"Waitukaitis, Scott R","last_name":"Waitukaitis"},{"first_name":"James","last_name":"Sprittles","full_name":"Sprittles, James"},{"full_name":"Souslov, Anton","last_name":"Souslov","first_name":"Anton"}],"title":"SouslovLab/PRL2023-ModellingLeidenfrostLevitationofSoftElasticSolids: v1.0.1","status":"public","abstract":[{"lang":"eng","text":"see Readme file"}],"year":"2023","_id":"14523","date_published":"2023-09-08T00:00:00Z","type":"research_data_reference","oa":1,"oa_version":"Published Version","citation":{"chicago":"Binysh, Jack, Indrajit Chakraborty, Mykyta Chubynsky, Vicente L Diaz Melian, Scott R Waitukaitis, James Sprittles, and Anton Souslov. “SouslovLab/PRL2023-ModellingLeidenfrostLevitationofSoftElasticSolids: V1.0.1.” Zenodo, 2023. <a href=\"https://doi.org/10.5281/ZENODO.8329143\">https://doi.org/10.5281/ZENODO.8329143</a>.","short":"J. Binysh, I. Chakraborty, M. Chubynsky, V.L. Diaz Melian, S.R. Waitukaitis, J. Sprittles, A. Souslov, (2023).","ieee":"J. Binysh <i>et al.</i>, “SouslovLab/PRL2023-ModellingLeidenfrostLevitationofSoftElasticSolids: v1.0.1.” Zenodo, 2023.","ista":"Binysh J, Chakraborty I, Chubynsky M, Diaz Melian VL, Waitukaitis SR, Sprittles J, Souslov A. 2023. SouslovLab/PRL2023-ModellingLeidenfrostLevitationofSoftElasticSolids: v1.0.1, Zenodo, <a href=\"https://doi.org/10.5281/ZENODO.8329143\">10.5281/ZENODO.8329143</a>.","ama":"Binysh J, Chakraborty I, Chubynsky M, et al. SouslovLab/PRL2023-ModellingLeidenfrostLevitationofSoftElasticSolids: v1.0.1. 2023. doi:<a href=\"https://doi.org/10.5281/ZENODO.8329143\">10.5281/ZENODO.8329143</a>","apa":"Binysh, J., Chakraborty, I., Chubynsky, M., Diaz Melian, V. L., Waitukaitis, S. R., Sprittles, J., &#38; Souslov, A. (2023). SouslovLab/PRL2023-ModellingLeidenfrostLevitationofSoftElasticSolids: v1.0.1. Zenodo. <a href=\"https://doi.org/10.5281/ZENODO.8329143\">https://doi.org/10.5281/ZENODO.8329143</a>","mla":"Binysh, Jack, et al. <i>SouslovLab/PRL2023-ModellingLeidenfrostLevitationofSoftElasticSolids: V1.0.1</i>. Zenodo, 2023, doi:<a href=\"https://doi.org/10.5281/ZENODO.8329143\">10.5281/ZENODO.8329143</a>."},"date_created":"2023-11-13T09:12:11Z","month":"09","publisher":"Zenodo","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","main_file_link":[{"open_access":"1","url":"https://doi.org/10.5281/ZENODO.8329143"}],"fulldoi":"https://doi.org/10.5281/ZENODO.8329143","ddc":["530"]},{"OA_place":"publisher","department":[{"_id":"GradSch"},{"_id":"MiSi"}],"status":"public","has_accepted_license":"1","corr_author":"1","doi":"10.15479/14530","related_material":{"record":[{"id":"461","relation":"part_of_dissertation","status":"public"},{"id":"10791","relation":"part_of_dissertation","status":"public"},{"relation":"part_of_dissertation","id":"7932","status":"public"},{"relation":"part_of_dissertation","id":"10703","status":"public"},{"status":"public","relation":"old_edition","id":"12726"}]},"month":"11","ddc":["530","570"],"file":[{"content_type":"application/pdf","checksum":"52e1d0ab6c1abe59c82dfe8c9ff5f83a","creator":"mriedl","date_updated":"2023-11-15T09:52:54Z","file_name":"Thesis_Riedl_2023_corr.pdf","success":1,"file_id":"14536","access_level":"open_access","date_created":"2023-11-15T09:52:54Z","file_size":36743942,"relation":"main_file"}],"acknowledged_ssus":[{"_id":"M-Shop"},{"_id":"Bio"}],"date_published":"2023-11-16T00:00:00Z","type":"dissertation","degree_awarded":"PhD","oa_version":"Updated Version","language":[{"iso":"eng"}],"keyword":["Synchronization","Collective Movement","Active Matter","Cell Migration","Active Colloids"],"author":[{"full_name":"Riedl, Michael","last_name":"Riedl","id":"3BE60946-F248-11E8-B48F-1D18A9856A87","first_name":"Michael","orcid":"0000-0003-4844-6311"}],"title":"Synchronization in collectively moving active matter","abstract":[{"lang":"eng","text":"Most motions of many-body systems at any scale in nature with sufficient degrees of freedom tend to be chaotic; reaching from the orbital motion of planets, the air currents in our atmosphere, down to the water flowing through our pipelines or the movement of a population of bacteria. To the observer it is therefore intriguing when a moving collective exhibits order. Collective motion of flocks of birds, schools of fish or swarms of self-propelled particles or robots have been studied extensively over the past decades but the mechanisms involved in the transition from chaos to order remain unclear. Here, the interactions, that in most systems give rise to chaos, sustain order.  In this thesis we investigate mechanisms that preserve, destabilize or lead to the ordered state. We show that endothelial cells migrating in circular confinements transition to a collective rotating state and concomitantly synchronize the frequencies of nucleating actin waves within individual cells. Consequently, the frequency dependent cell migration speed uniformizes across the population. Complementary to the WAVE dependent nucleation of traveling actin waves, we show that in leukocytes the actin polymerization depending on WASp generates pushing forces locally at stationary patches. Next, in pipe flows, we study methods to disrupt the self--sustaining cycle of turbulence and therefore relaminarize the flow. While we find in pulsating flow conditions that turbulence emerges through a helical instability during the decelerating phase. Finally, we show quantitatively in brain slices of mice that wild-type control neurons can compensate the migratory deficits of a genetically modified neuronal sub--population in the developing cortex.  "}],"page":"260","_id":"14530","year":"2023","alternative_title":["ISTA Thesis"],"publication_identifier":{"issn":["2663-337X"]},"publication_status":"published","day":"16","article_processing_charge":"No","supervisor":[{"orcid":"0000-0003-2057-2754","id":"3A374330-F248-11E8-B48F-1D18A9856A87","first_name":"Björn","full_name":"Hof, Björn","last_name":"Hof"}],"date_updated":"2026-04-07T13:29:13Z","publisher":"Institute of Science and Technology Austria","date_created":"2023-11-15T09:59:03Z","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","fulldoi":"https://doi.org/10.15479/14530","oa":1,"citation":{"ista":"Riedl M. 2023. Synchronization in collectively moving active matter. Institute of Science and Technology Austria.","mla":"Riedl, Michael. <i>Synchronization in Collectively Moving Active Matter</i>. Institute of Science and Technology Austria, 2023, doi:<a href=\"https://doi.org/10.15479/14530\">10.15479/14530</a>.","ama":"Riedl M. Synchronization in collectively moving active matter. 2023. doi:<a href=\"https://doi.org/10.15479/14530\">10.15479/14530</a>","apa":"Riedl, M. (2023). <i>Synchronization in collectively moving active matter</i>. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/14530\">https://doi.org/10.15479/14530</a>","ieee":"M. Riedl, “Synchronization in collectively moving active matter,” Institute of Science and Technology Austria, 2023.","chicago":"Riedl, Michael. “Synchronization in Collectively Moving Active Matter.” Institute of Science and Technology Austria, 2023. <a href=\"https://doi.org/10.15479/14530\">https://doi.org/10.15479/14530</a>.","short":"M. Riedl, Synchronization in Collectively Moving Active Matter, Institute of Science and Technology Austria, 2023."},"file_date_updated":"2023-11-15T09:52:54Z"},{"corr_author":"1","department":[{"_id":"KrCh"},{"_id":"GradSch"}],"project":[{"grant_number":"863818","name":"Formal Methods for Stochastic Models: Algorithms and Applications","_id":"0599E47C-7A3F-11EA-A408-12923DDC885E","call_identifier":"H2020"},{"call_identifier":"H2020","name":"International IST Doctoral Program","grant_number":"665385","_id":"2564DBCA-B435-11E9-9278-68D0E5697425"}],"OA_place":"publisher","status":"public","related_material":{"record":[{"status":"public","id":"10414","relation":"part_of_dissertation"},{"status":"public","id":"12000","relation":"part_of_dissertation"},{"relation":"part_of_dissertation","id":"9644","status":"public"},{"relation":"part_of_dissertation","id":"12511","status":"public"},{"status":"public","relation":"part_of_dissertation","id":"14600"},{"id":"14601","relation":"part_of_dissertation","status":"public"},{"relation":"part_of_dissertation","id":"1194","status":"public"}]},"doi":"10.15479/14539","file":[{"file_size":2116426,"relation":"main_file","file_id":"14540","success":1,"access_level":"open_access","date_created":"2023-11-15T13:43:28Z","date_updated":"2023-11-15T13:43:28Z","file_name":"main.pdf","content_type":"application/pdf","checksum":"f23e002b0059ca78e1fbb864da52dd7e","creator":"cchlebak"},{"relation":"source_file","file_size":35884057,"date_created":"2023-11-15T13:44:24Z","access_level":"closed","file_id":"14541","file_name":"thesis_source.zip","date_updated":"2023-11-15T13:44:24Z","creator":"cchlebak","checksum":"80ca37618a3c7b59866875f8be9b15ed","content_type":"application/x-zip-compressed"}],"ddc":["000"],"month":"11","language":[{"iso":"eng"}],"date_published":"2023-11-15T00:00:00Z","type":"dissertation","degree_awarded":"PhD","oa_version":"Published Version","alternative_title":["ISTA Thesis"],"year":"2023","_id":"14539","publication_identifier":{"issn":["2663-337X"],"isbn":["978-3-99078-036-7"]},"title":"Automated verification and control of infinite state stochastic systems","author":[{"full_name":"Zikelic, Dorde","last_name":"Zikelic","first_name":"Dorde","id":"294AA7A6-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4681-1699"}],"page":"256","abstract":[{"lang":"eng","text":"Stochastic systems provide a formal framework for modelling and quantifying uncertainty in systems and have been widely adopted in many application domains. Formal\r\nverification and control of finite state stochastic systems, a subfield of formal methods\r\nalso known as probabilistic model checking, is well studied. In contrast, formal verification and control of infinite state stochastic systems have received comparatively\r\nless attention. However, infinite state stochastic systems commonly arise in practice.\r\nFor instance, probabilistic models that contain continuous probability distributions such\r\nas normal or uniform, or stochastic dynamical systems which are a classical model for\r\ncontrol under uncertainty, both give rise to infinite state systems.\r\nThe goal of this thesis is to contribute to laying theoretical and algorithmic foundations\r\nof fully automated formal verification and control of infinite state stochastic systems,\r\nwith a particular focus on systems that may be executed over a long or infinite time.\r\nWe consider formal verification of infinite state stochastic systems in the setting of\r\nstatic analysis of probabilistic programs and formal control in the setting of controller\r\nsynthesis in stochastic dynamical systems. For both problems, we present some of the\r\nfirst fully automated methods for probabilistic (a.k.a. quantitative) reachability and\r\nsafety analysis applicable to infinite time horizon systems. We also advance the state\r\nof the art of probability 1 (a.k.a. qualitative) reachability analysis for both problems.\r\nFinally, for formal controller synthesis in stochastic dynamical systems, we present a\r\nnovel framework for learning neural network control policies in stochastic dynamical\r\nsystems with formal guarantees on correctness with respect to quantitative reachability,\r\nsafety or reach-avoid specifications.\r\n"}],"supervisor":[{"last_name":"Chatterjee","full_name":"Chatterjee, Krishnendu","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","first_name":"Krishnendu","orcid":"0000-0002-4561-241X"}],"date_updated":"2026-04-07T13:27:56Z","article_processing_charge":"No","day":"15","publication_status":"published","ec_funded":1,"tmp":{"short":"CC BY-NC-SA (4.0)","name":"Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode","image":"/images/cc_by_nc_sa.png"},"fulldoi":"https://doi.org/10.15479/14539","date_created":"2023-11-15T13:39:10Z","publisher":"Institute of Science and Technology Austria","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","license":"https://creativecommons.org/licenses/by-nc-sa/4.0/","oa":1,"file_date_updated":"2023-11-15T13:44:24Z","citation":{"ista":"Zikelic D. 2023. Automated verification and control of infinite state stochastic systems. Institute of Science and Technology Austria.","apa":"Zikelic, D. (2023). <i>Automated verification and control of infinite state stochastic systems</i>. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/14539\">https://doi.org/10.15479/14539</a>","ama":"Zikelic D. Automated verification and control of infinite state stochastic systems. 2023. doi:<a href=\"https://doi.org/10.15479/14539\">10.15479/14539</a>","mla":"Zikelic, Dorde. <i>Automated Verification and Control of Infinite State Stochastic Systems</i>. Institute of Science and Technology Austria, 2023, doi:<a href=\"https://doi.org/10.15479/14539\">10.15479/14539</a>.","ieee":"D. Zikelic, “Automated verification and control of infinite state stochastic systems,” Institute of Science and Technology Austria, 2023.","chicago":"Zikelic, Dorde. “Automated Verification and Control of Infinite State Stochastic Systems.” Institute of Science and Technology Austria, 2023. <a href=\"https://doi.org/10.15479/14539\">https://doi.org/10.15479/14539</a>.","short":"D. Zikelic, Automated Verification and Control of Infinite State Stochastic Systems, Institute of Science and Technology Austria, 2023."}},{"pmid":1,"scopus_import":"1","doi":"10.1016/j.cels.2023.10.007","project":[{"call_identifier":"H2020","_id":"62935a00-2b32-11ec-9570-eff30fa39068","grant_number":"725746","name":"Quantitative analysis of DNA methylation maintenance with chromatin"}],"department":[{"_id":"DaZi"}],"status":"public","has_accepted_license":"1","corr_author":"1","intvolume":"        14","date_published":"2023-11-15T00:00:00Z","type":"journal_article","oa_version":"Published Version","external_id":{"isi":["001113459100001"],"pmid":["37944515"]},"volume":14,"language":[{"iso":"eng"}],"month":"11","quality_controlled":"1","ddc":["570"],"file":[{"content_type":"application/pdf","checksum":"101fdac59e6f1102d68ef91f2b5bd51a","creator":"dernst","date_updated":"2023-11-20T11:22:52Z","file_name":"2023_CellSystems_Briffa.pdf","success":1,"file_id":"14580","access_level":"open_access","date_created":"2023-11-20T11:22:52Z","file_size":5587897,"relation":"main_file"}],"publication_status":"published","article_processing_charge":"Yes (via OA deal)","day":"15","ec_funded":1,"date_updated":"2025-09-09T13:28:50Z","author":[{"full_name":"Briffa, Amy","last_name":"Briffa","first_name":"Amy"},{"last_name":"Hollwey","full_name":"Hollwey, Elizabeth","first_name":"Elizabeth","id":"b8c4f54b-e484-11eb-8fdc-a54df64ef6dd"},{"first_name":"Zaigham","full_name":"Shahzad, Zaigham","last_name":"Shahzad"},{"last_name":"Moore","full_name":"Moore, Jonathan D.","first_name":"Jonathan D."},{"first_name":"David B.","full_name":"Lyons, David B.","last_name":"Lyons"},{"first_name":"Martin","last_name":"Howard","full_name":"Howard, Martin"},{"last_name":"Zilberman","full_name":"Zilberman, Daniel","orcid":"0000-0002-0123-8649","id":"6973db13-dd5f-11ea-814e-b3e5455e9ed1","first_name":"Daniel"}],"title":"Millennia-long epigenetic fluctuations generate intragenic DNA methylation variance in Arabidopsis populations","publication":"Cell Systems","abstract":[{"lang":"eng","text":"Methylation of CG dinucleotides (mCGs), which regulates eukaryotic genome functions, is epigenetically propagated by Dnmt1/MET1 methyltransferases. How mCG is established and transmitted across generations despite imperfect enzyme fidelity is unclear. Whether mCG variation in natural populations is governed by genetic or epigenetic inheritance also remains mysterious. Here, we show that MET1 de novo activity, which is enhanced by existing proximate methylation, seeds and stabilizes mCG in Arabidopsis thaliana genes. MET1 activity is restricted by active demethylation and suppressed by histone variant H2A.Z, producing localized mCG patterns. Based on these observations, we develop a stochastic mathematical model that precisely recapitulates mCG inheritance dynamics and predicts intragenic mCG patterns and their population-scale variation given only CG site spacing. Our results demonstrate that intragenic mCG establishment, inheritance, and variance constitute a unified epigenetic process, revealing that intragenic mCG undergoes large, millennia-long epigenetic fluctuations and can therefore mediate evolution on this timescale."}],"page":"953-967","_id":"14551","year":"2023","publication_identifier":{"issn":["2405-4712"],"eissn":["2405-4720"]},"oa":1,"citation":{"ieee":"A. Briffa <i>et al.</i>, “Millennia-long epigenetic fluctuations generate intragenic DNA methylation variance in Arabidopsis populations,” <i>Cell Systems</i>, vol. 14, no. 11. Elsevier, pp. 953–967, 2023.","mla":"Briffa, Amy, et al. “Millennia-Long Epigenetic Fluctuations Generate Intragenic DNA Methylation Variance in Arabidopsis Populations.” <i>Cell Systems</i>, vol. 14, no. 11, Elsevier, 2023, pp. 953–67, doi:<a href=\"https://doi.org/10.1016/j.cels.2023.10.007\">10.1016/j.cels.2023.10.007</a>.","apa":"Briffa, A., Hollwey, E., Shahzad, Z., Moore, J. D., Lyons, D. B., Howard, M., &#38; Zilberman, D. (2023). Millennia-long epigenetic fluctuations generate intragenic DNA methylation variance in Arabidopsis populations. <i>Cell Systems</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.cels.2023.10.007\">https://doi.org/10.1016/j.cels.2023.10.007</a>","ama":"Briffa A, Hollwey E, Shahzad Z, et al. Millennia-long epigenetic fluctuations generate intragenic DNA methylation variance in Arabidopsis populations. <i>Cell Systems</i>. 2023;14(11):953-967. doi:<a href=\"https://doi.org/10.1016/j.cels.2023.10.007\">10.1016/j.cels.2023.10.007</a>","ista":"Briffa A, Hollwey E, Shahzad Z, Moore JD, Lyons DB, Howard M, Zilberman D. 2023. Millennia-long epigenetic fluctuations generate intragenic DNA methylation variance in Arabidopsis populations. Cell Systems. 14(11), 953–967.","short":"A. Briffa, E. Hollwey, Z. Shahzad, J.D. Moore, D.B. Lyons, M. Howard, D. Zilberman, Cell Systems 14 (2023) 953–967.","chicago":"Briffa, Amy, Elizabeth Hollwey, Zaigham Shahzad, Jonathan D. Moore, David B. Lyons, Martin Howard, and Daniel Zilberman. “Millennia-Long Epigenetic Fluctuations Generate Intragenic DNA Methylation Variance in Arabidopsis Populations.” <i>Cell Systems</i>. Elsevier, 2023. <a href=\"https://doi.org/10.1016/j.cels.2023.10.007\">https://doi.org/10.1016/j.cels.2023.10.007</a>."},"file_date_updated":"2023-11-20T11:22:52Z","issue":"11","article_type":"original","publisher":"Elsevier","isi":1,"date_created":"2023-11-19T23:00:54Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"fulldoi":"https://doi.org/10.1016/j.cels.2023.10.007","acknowledgement":"We would like to thank Xiaoqi Feng, Ander Movilla Miangolarra, and Suzanne de Bruijn for discussions. This work was supported by BBSRC Institute Strategic Programme GEN (BB/P013511/1) to M.H. and D.Z. and by a European Research Council grant MaintainMeth (725746) to D.Z."},{"oa_version":"Submitted Version","intvolume":"       382","type":"journal_article","date_published":"2023-11-09T00:00:00Z","volume":382,"external_id":{"pmid":["37943897"],"isi":["001138596500033"]},"language":[{"iso":"eng"}],"month":"11","OA_type":"green","quality_controlled":"1","main_file_link":[{"url":"https://centaur.reading.ac.uk/113962/1/adh8830_CombinedPDF_v6.pdf","open_access":"1"}],"scopus_import":"1","pmid":1,"doi":"10.1126/science.adh8830","related_material":{"record":[{"id":"14579","relation":"research_data","status":"public"}]},"status":"public","OA_place":"repository","department":[{"_id":"NiBa"}],"citation":{"ieee":"M. L. Robinson <i>et al.</i>, “Plant size, latitude, and phylogeny explain within-population variability in herbivory,” <i>Science</i>, vol. 382, no. 6671. AAAS, pp. 679–683, 2023.","ista":"Robinson ML et al. 2023. Plant size, latitude, and phylogeny explain within-population variability in herbivory. Science. 382(6671), 679–683.","ama":"Robinson ML, Hahn PG, Inouye BD, et al. Plant size, latitude, and phylogeny explain within-population variability in herbivory. <i>Science</i>. 2023;382(6671):679-683. doi:<a href=\"https://doi.org/10.1126/science.adh8830\">10.1126/science.adh8830</a>","mla":"Robinson, M. L., et al. “Plant Size, Latitude, and Phylogeny Explain within-Population Variability in Herbivory.” <i>Science</i>, vol. 382, no. 6671, AAAS, 2023, pp. 679–83, doi:<a href=\"https://doi.org/10.1126/science.adh8830\">10.1126/science.adh8830</a>.","apa":"Robinson, M. L., Hahn, P. G., Inouye, B. D., Underwood, N., Whitehead, S. R., Abbott, K. C., … Wetzel, W. C. (2023). Plant size, latitude, and phylogeny explain within-population variability in herbivory. <i>Science</i>. AAAS. <a href=\"https://doi.org/10.1126/science.adh8830\">https://doi.org/10.1126/science.adh8830</a>","chicago":"Robinson, M. L., P. G. Hahn, B. D. Inouye, N. Underwood, S. R. Whitehead, K. C. Abbott, E. M. Bruna, et al. “Plant Size, Latitude, and Phylogeny Explain within-Population Variability in Herbivory.” <i>Science</i>. AAAS, 2023. <a href=\"https://doi.org/10.1126/science.adh8830\">https://doi.org/10.1126/science.adh8830</a>.","short":"M.L. Robinson, P.G. Hahn, B.D. Inouye, N. Underwood, S.R. Whitehead, K.C. Abbott, E.M. Bruna, N.I. Cacho, L.A. Dyer, L. Abdala-Roberts, W.J. Allen, J.F. Andrade, D.F. Angulo, D. Anjos, D.N. Anstett, R. Bagchi, S. Bagchi, M. Barbosa, S. Barrett, C. Baskett, E. Ben-Simchon, K.J. Bloodworth, J.L. Bronstein, Y.M. Buckley, K.T. Burghardt, C. Bustos-Segura, E.S. Calixto, R.L. Carvalho, B. Castagneyrol, M.C. Chiuffo, D. Cinoğlu, E. Cinto Mejía, M.C. Cock, R. Cogni, O.L. Cope, T. Cornelissen, D.R. Cortez, D.W. Crowder, C. Dallstream, W. Dáttilo, J.K. Davis, R.D. Dimarco, H.E. Dole, I.N. Egbon, M. Eisenring, A. Ejomah, B.D. Elderd, M.J. Endara, M.D. Eubanks, S.E. Everingham, K.N. Farah, R.P. Farias, A.P. Fernandes, G.W. Fernandes, M. Ferrante, A. Finn, G.A. Florjancic, M.L. Forister, Q.N. Fox, E. Frago, F.M. França, A.S. Getman-Pickering, Z. Getman-Pickering, E. Gianoli, B. Gooden, M.M. Gossner, K.A. Greig, S. Gripenberg, R. Groenteman, P. Grof-Tisza, N. Haack, L. Hahn, S.M. Haq, A.M. Helms, J. Hennecke, S.L. Hermann, L.M. Holeski, S. Holm, M.C. Hutchinson, E.E. Jackson, S. Kagiya, A. Kalske, M. Kalwajtys, R. Karban, R. Kariyat, T. Keasar, M.F. Kersch-Becker, H.M. Kharouba, T.N. Kim, D.M. Kimuyu, J. Kluse, S.E. Koerner, K.J. Komatsu, S. Krishnan, M. Laihonen, L. Lamelas-López, M.C. Lascaleia, N. Lecomte, C.R. Lehn, X. Li, R.L. Lindroth, E.F. Lopresti, M. Losada, A.M. Louthan, V.J. Luizzi, S.C. Lynch, J.S. Lynn, N.J. Lyon, L.F. Maia, R.A. Maia, T.L. Mannall, B.S. Martin, T.J. Massad, A.C. Mccall, K. Mcgurrin, A.C. Merwin, Z. Mijango-Ramos, C.H. Mills, A.T. Moles, C.M. Moore, X. Moreira, C.R. Morrison, M.C. Moshobane, A. Muola, R. Nakadai, K. Nakajima, S. Novais, C.O. Ogbebor, H. Ohsaki, V.S. Pan, N.A. Pardikes, M. Pareja, N. Parthasarathy, R.R. Pawar, Q. Paynter, I.S. Pearse, R.M. Penczykowski, A.A. Pepi, C.C. Pereira, S.S. Phartyal, F.I. Piper, K. Poveda, E.G. Pringle, J. Puy, T. Quijano, C. Quintero, S. Rasmann, C. Rosche, L.Y. Rosenheim, J.A. Rosenheim, J.B. Runyon, A. Sadeh, Y. Sakata, D.M. Salcido, C. Salgado-Luarte, B.A. Santos, Y. Sapir, Y. Sasal, Y. Sato, M. Sawant, H. Schroeder, I. Schumann, M. Segoli, H. Segre, O. Shelef, N. Shinohara, R.P. Singh, D.S. Smith, M. Sobral, G.C. Stotz, A.J.M. Tack, M. Tayal, J.F. Tooker, D. Torrico-Bazoberry, K. Tougeron, A.M. Trowbridge, S. Utsumi, O. Uyi, J.L. Vaca-Uribe, A. Valtonen, L.J.A. Van Dijk, V. Vandvik, J. Villellas, L.P. Waller, M.G. Weber, A. Yamawo, S. Yim, P.L. Zarnetske, L.N. Zehr, Z. Zhong, W.C. Wetzel, Science 382 (2023) 679–683."},"oa":1,"issue":"6671","article_type":"original","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","isi":1,"publisher":"AAAS","date_created":"2023-11-19T23:00:54Z","fulldoi":"https://doi.org/10.1126/science.adh8830","acknowledgement":"The authors acknowledge funding for central project coordination from NSF Research Coordination Network grant DEB-2203582; the Ecology, Evolution, and Behavior Program at Michigan State University; and AgBioResearch at Michigan State University. Site-specific funding is listed in the supplementary materials.","publication_status":"published","article_processing_charge":"No","day":"09","date_updated":"2025-09-09T13:23:56Z","abstract":[{"lang":"eng","text":"Interactions between plants and herbivores are central in most ecosystems, but their strength is highly variable. The amount of variability within a system is thought to influence most aspects of plant-herbivore biology, from ecological stability to plant defense evolution. Our understanding of what influences variability, however, is limited by sparse data. We collected standardized surveys of herbivory for 503 plant species at 790 sites across 116° of latitude. With these data, we show that within-population variability in herbivory increases with latitude, decreases with plant size, and is phylogenetically structured. Differences in the magnitude of variability are thus central to how plant-herbivore biology varies across macroscale gradients. We argue that increased focus on interaction variability will advance understanding of patterns of life on Earth."}],"page":"679-683","title":"Plant size, latitude, and phylogeny explain within-population variability in herbivory","author":[{"last_name":"Robinson","full_name":"Robinson, M. L.","first_name":"M. L."},{"last_name":"Hahn","full_name":"Hahn, P. G.","first_name":"P. G."},{"first_name":"B. D.","full_name":"Inouye, B. D.","last_name":"Inouye"},{"first_name":"N.","last_name":"Underwood","full_name":"Underwood, N."},{"first_name":"S. R.","full_name":"Whitehead, S. R.","last_name":"Whitehead"},{"full_name":"Abbott, K. C.","last_name":"Abbott","first_name":"K. C."},{"full_name":"Bruna, E. M.","last_name":"Bruna","first_name":"E. M."},{"last_name":"Cacho","full_name":"Cacho, N. I.","first_name":"N. I."},{"first_name":"L. A.","last_name":"Dyer","full_name":"Dyer, L. A."},{"first_name":"L.","last_name":"Abdala-Roberts","full_name":"Abdala-Roberts, L."},{"first_name":"W. J.","full_name":"Allen, W. J.","last_name":"Allen"},{"first_name":"J. F.","full_name":"Andrade, J. F.","last_name":"Andrade"},{"first_name":"D. F.","last_name":"Angulo","full_name":"Angulo, D. F."},{"last_name":"Anjos","full_name":"Anjos, D.","first_name":"D."},{"last_name":"Anstett","full_name":"Anstett, D. N.","first_name":"D. N."},{"full_name":"Bagchi, R.","last_name":"Bagchi","first_name":"R."},{"first_name":"S.","full_name":"Bagchi, S.","last_name":"Bagchi"},{"first_name":"M.","last_name":"Barbosa","full_name":"Barbosa, M."},{"first_name":"S.","last_name":"Barrett","full_name":"Barrett, S."},{"orcid":"0000-0002-7354-8574","id":"3B4A7CE2-F248-11E8-B48F-1D18A9856A87","first_name":"Carina","full_name":"Baskett, Carina","last_name":"Baskett"},{"first_name":"E.","full_name":"Ben-Simchon, E.","last_name":"Ben-Simchon"},{"first_name":"K. J.","full_name":"Bloodworth, K. J.","last_name":"Bloodworth"},{"full_name":"Bronstein, J. L.","last_name":"Bronstein","first_name":"J. L."},{"first_name":"Y. M.","last_name":"Buckley","full_name":"Buckley, Y. M."},{"full_name":"Burghardt, K. T.","last_name":"Burghardt","first_name":"K. T."},{"last_name":"Bustos-Segura","full_name":"Bustos-Segura, C.","first_name":"C."},{"first_name":"E. S.","last_name":"Calixto","full_name":"Calixto, E. 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J.M.","last_name":"Tack","full_name":"Tack, A. J.M."},{"last_name":"Tayal","full_name":"Tayal, M.","first_name":"M."},{"first_name":"J. F.","full_name":"Tooker, J. F.","last_name":"Tooker"},{"first_name":"D.","full_name":"Torrico-Bazoberry, D.","last_name":"Torrico-Bazoberry"},{"first_name":"K.","last_name":"Tougeron","full_name":"Tougeron, K."},{"last_name":"Trowbridge","full_name":"Trowbridge, A. M.","first_name":"A. M."},{"first_name":"S.","full_name":"Utsumi, S.","last_name":"Utsumi"},{"full_name":"Uyi, O.","last_name":"Uyi","first_name":"O."},{"first_name":"J. L.","full_name":"Vaca-Uribe, J. L.","last_name":"Vaca-Uribe"},{"first_name":"A.","full_name":"Valtonen, A.","last_name":"Valtonen"},{"first_name":"L. J.A.","last_name":"Van Dijk","full_name":"Van Dijk, L. J.A."},{"last_name":"Vandvik","full_name":"Vandvik, V.","first_name":"V."},{"full_name":"Villellas, J.","last_name":"Villellas","first_name":"J."},{"last_name":"Waller","full_name":"Waller, L. P.","first_name":"L. P."},{"full_name":"Weber, M. G.","last_name":"Weber","first_name":"M. G."},{"first_name":"A.","full_name":"Yamawo, A.","last_name":"Yamawo"},{"first_name":"S.","full_name":"Yim, S.","last_name":"Yim"},{"last_name":"Zarnetske","full_name":"Zarnetske, P. L.","first_name":"P. L."},{"full_name":"Zehr, L. N.","last_name":"Zehr","first_name":"L. N."},{"first_name":"Z.","full_name":"Zhong, Z.","last_name":"Zhong"},{"full_name":"Wetzel, W. C.","last_name":"Wetzel","first_name":"W. C."}],"publication":"Science","publication_identifier":{"eissn":["1095-9203"]},"_id":"14552","year":"2023"},{"main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2212.07406"}],"quality_controlled":"1","month":"10","language":[{"iso":"eng"}],"volume":108,"external_id":{"arxiv":["2212.07406"]},"type":"journal_article","date_published":"2023-10-30T00:00:00Z","intvolume":"       108","oa_version":"Preprint","corr_author":"1","department":[{"_id":"JoFi"}],"status":"public","doi":"10.1103/PhysRevA.108.042430","scopus_import":"1","fulldoi":"https://doi.org/10.1103/PhysRevA.108.042430","date_created":"2023-11-19T23:00:54Z","publisher":"American Physical Society","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_type":"original","issue":"4","oa":1,"article_number":"042430","citation":{"ama":"Fedotova E, Kuznetsov N, Tiunov E, Ulanov AE, Lvovsky AI. Continuous-variable quantum tomography of high-amplitude states. <i>Physical Review A</i>. 2023;108(4). doi:<a href=\"https://doi.org/10.1103/PhysRevA.108.042430\">10.1103/PhysRevA.108.042430</a>","apa":"Fedotova, E., Kuznetsov, N., Tiunov, E., Ulanov, A. E., &#38; Lvovsky, A. I. (2023). Continuous-variable quantum tomography of high-amplitude states. <i>Physical Review A</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevA.108.042430\">https://doi.org/10.1103/PhysRevA.108.042430</a>","mla":"Fedotova, Ekaterina, et al. “Continuous-Variable Quantum Tomography of High-Amplitude States.” <i>Physical Review A</i>, vol. 108, no. 4, 042430, American Physical Society, 2023, doi:<a href=\"https://doi.org/10.1103/PhysRevA.108.042430\">10.1103/PhysRevA.108.042430</a>.","ista":"Fedotova E, Kuznetsov N, Tiunov E, Ulanov AE, Lvovsky AI. 2023. Continuous-variable quantum tomography of high-amplitude states. Physical Review A. 108(4), 042430.","ieee":"E. Fedotova, N. Kuznetsov, E. Tiunov, A. E. Ulanov, and A. I. Lvovsky, “Continuous-variable quantum tomography of high-amplitude states,” <i>Physical Review A</i>, vol. 108, no. 4. American Physical Society, 2023.","short":"E. Fedotova, N. Kuznetsov, E. Tiunov, A.E. Ulanov, A.I. Lvovsky, Physical Review A 108 (2023).","chicago":"Fedotova, Ekaterina, Nikolai Kuznetsov, Egor Tiunov, A. E. Ulanov, and A. I. Lvovsky. “Continuous-Variable Quantum Tomography of High-Amplitude States.” <i>Physical Review A</i>. American Physical Society, 2023. <a href=\"https://doi.org/10.1103/PhysRevA.108.042430\">https://doi.org/10.1103/PhysRevA.108.042430</a>."},"year":"2023","_id":"14553","publication_identifier":{"eissn":["2469-9934"],"issn":["2469-9926"]},"publication":"Physical Review A","title":"Continuous-variable quantum tomography of high-amplitude states","author":[{"last_name":"Fedotova","full_name":"Fedotova, Ekaterina","id":"c1bea5e1-878e-11ee-9dff-d7404e4422ab","first_name":"Ekaterina","orcid":"0000-0001-7242-015X"},{"full_name":"Kuznetsov, Nikolai","last_name":"Kuznetsov","first_name":"Nikolai"},{"full_name":"Tiunov, Egor","last_name":"Tiunov","first_name":"Egor"},{"last_name":"Ulanov","full_name":"Ulanov, A. E.","first_name":"A. E."},{"first_name":"A. I.","full_name":"Lvovsky, A. I.","last_name":"Lvovsky"}],"abstract":[{"text":"Quantum state tomography is an essential component of modern quantum technology. In application to continuous-variable harmonic-oscillator systems, such as the electromagnetic field, existing tomography methods typically reconstruct the state in discrete bases, and are hence limited to states with relatively low amplitudes and energies. Here, we overcome this limitation by utilizing a feed-forward neural network to obtain the density matrix directly in the continuous position basis. An important benefit of our approach is the ability to choose specific regions in the phase space for detailed reconstruction. This results in a relatively slow scaling of the amount of resources required for the reconstruction with the state amplitude, and hence allows us to dramatically increase the range of amplitudes accessible with our method.","lang":"eng"}],"date_updated":"2024-10-09T21:07:19Z","arxiv":1,"article_processing_charge":"No","day":"30","publication_status":"published"},{"quality_controlled":"1","file":[{"content_type":"application/pdf","checksum":"3aef1475b1882c8dec112df9a5167c39","creator":"dernst","date_updated":"2023-11-20T08:34:57Z","file_name":"2023_ESAIM_Cornalba.pdf","file_id":"14560","success":1,"access_level":"open_access","date_created":"2023-11-20T08:34:57Z","file_size":1508534,"relation":"main_file"}],"ddc":["510"],"month":"09","language":[{"iso":"eng"}],"volume":57,"external_id":{"isi":["001087237700001"]},"type":"journal_article","date_published":"2023-09-01T00:00:00Z","intvolume":"        57","oa_version":"Published Version","corr_author":"1","department":[{"_id":"JuFi"}],"project":[{"grant_number":"F6504","_id":"fc31cba2-9c52-11eb-aca3-ff467d239cd2","name":"Taming Complexity in Partial Differential Systems"},{"name":"ISTplus - Postdoctoral Fellowships","grant_number":"754411","_id":"260C2330-B435-11E9-9278-68D0E5697425","call_identifier":"H2020"}],"status":"public","has_accepted_license":"1","related_material":{"link":[{"url":"https://github.com/tonyshardlow/RIDK-FD","relation":"software"}]},"doi":"10.1051/m2an/2023077","scopus_import":"1","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"fulldoi":"https://doi.org/10.1051/m2an/2023077","acknowledgement":"The authors thank the anonymous referees for their careful reading of the manuscript and their\r\nvaluable suggestions. FC gratefully acknowledges funding from the Austrian Science Fund (FWF) through the project F65, and from the European Union’s Horizon 2020 research and innovation programme under the Marie Sk lodowska-Curie grant agreement No. 754411 (the latter funding source covered the first part of this project).","date_created":"2023-11-19T23:00:55Z","publisher":"EDP Sciences","isi":1,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","article_type":"original","issue":"5","oa":1,"file_date_updated":"2023-11-20T08:34:57Z","citation":{"ieee":"F. Cornalba and T. Shardlow, “The regularised inertial Dean’ Kawasaki equation: Discontinuous Galerkin approximation and modelling for low-density regime,” <i>ESAIM: Mathematical Modelling and Numerical Analysis</i>, vol. 57, no. 5. EDP Sciences, pp. 3061–3090, 2023.","mla":"Cornalba, Federico, and Tony Shardlow. “The Regularised Inertial Dean’ Kawasaki Equation: Discontinuous Galerkin Approximation and Modelling for Low-Density Regime.” <i>ESAIM: Mathematical Modelling and Numerical Analysis</i>, vol. 57, no. 5, EDP Sciences, 2023, pp. 3061–90, doi:<a href=\"https://doi.org/10.1051/m2an/2023077\">10.1051/m2an/2023077</a>.","apa":"Cornalba, F., &#38; Shardlow, T. (2023). The regularised inertial Dean’ Kawasaki equation: Discontinuous Galerkin approximation and modelling for low-density regime. <i>ESAIM: Mathematical Modelling and Numerical Analysis</i>. EDP Sciences. <a href=\"https://doi.org/10.1051/m2an/2023077\">https://doi.org/10.1051/m2an/2023077</a>","ama":"Cornalba F, Shardlow T. The regularised inertial Dean’ Kawasaki equation: Discontinuous Galerkin approximation and modelling for low-density regime. <i>ESAIM: Mathematical Modelling and Numerical Analysis</i>. 2023;57(5):3061-3090. doi:<a href=\"https://doi.org/10.1051/m2an/2023077\">10.1051/m2an/2023077</a>","ista":"Cornalba F, Shardlow T. 2023. The regularised inertial Dean’ Kawasaki equation: Discontinuous Galerkin approximation and modelling for low-density regime. ESAIM: Mathematical Modelling and Numerical Analysis. 57(5), 3061–3090.","short":"F. Cornalba, T. Shardlow, ESAIM: Mathematical Modelling and Numerical Analysis 57 (2023) 3061–3090.","chicago":"Cornalba, Federico, and Tony Shardlow. “The Regularised Inertial Dean’ Kawasaki Equation: Discontinuous Galerkin Approximation and Modelling for Low-Density Regime.” <i>ESAIM: Mathematical Modelling and Numerical Analysis</i>. EDP Sciences, 2023. <a href=\"https://doi.org/10.1051/m2an/2023077\">https://doi.org/10.1051/m2an/2023077</a>."},"year":"2023","_id":"14554","publication_identifier":{"eissn":["2804-7214"],"issn":["2822-7840"]},"title":"The regularised inertial Dean' Kawasaki equation: Discontinuous Galerkin approximation and modelling for low-density regime","author":[{"first_name":"Federico","id":"2CEB641C-A400-11E9-A717-D712E6697425","orcid":"0000-0002-6269-5149","full_name":"Cornalba, Federico","last_name":"Cornalba"},{"first_name":"Tony","last_name":"Shardlow","full_name":"Shardlow, Tony"}],"publication":"ESAIM: Mathematical Modelling and Numerical Analysis","page":"3061-3090","abstract":[{"lang":"eng","text":"The Regularised Inertial Dean–Kawasaki model (RIDK) – introduced by the authors and J. Zimmer in earlier works – is a nonlinear stochastic PDE capturing fluctuations around the meanfield limit for large-scale particle systems in both particle density and momentum density. We focus on the following two aspects. Firstly, we set up a Discontinuous Galerkin (DG) discretisation scheme for the RIDK model: we provide suitable definitions of numerical fluxes at the interface of the mesh elements which are consistent with the wave-type nature of the RIDK model and grant stability of the simulations, and we quantify the rate of convergence in mean square to the continuous RIDK model. Secondly, we introduce modifications of the RIDK model in order to preserve positivity of the density (such a feature only holds in a “high-probability sense” for the original RIDK model). By means of numerical simulations, we show that the modifications lead to physically realistic and positive density profiles. In one case, subject to additional regularity constraints, we also prove positivity. Finally, we present an application of our methodology to a system of diffusing and reacting particles. Our Python code is available in open-source format."}],"date_updated":"2025-09-09T13:21:05Z","day":"01","article_processing_charge":"Yes (in subscription journal)","publication_status":"published","ec_funded":1},{"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","isi":1,"publisher":"Frontiers","date_created":"2023-11-19T23:00:55Z","acknowledgement":"The author(s) declare that no financial support was received for the research, authorship, and/or publication of this article.","fulldoi":"https://doi.org/10.3389/fcell.2023.1287420","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"citation":{"short":"M. Riedl, M.K. Sixt, Frontiers in Cell and Developmental Biology 11 (2023).","chicago":"Riedl, Michael, and Michael K Sixt. “The Excitable Nature of Polymerizing Actin and the Belousov-Zhabotinsky Reaction.” <i>Frontiers in Cell and Developmental Biology</i>. Frontiers, 2023. <a href=\"https://doi.org/10.3389/fcell.2023.1287420\">https://doi.org/10.3389/fcell.2023.1287420</a>.","ieee":"M. Riedl and M. K. Sixt, “The excitable nature of polymerizing actin and the Belousov-Zhabotinsky reaction,” <i>Frontiers in Cell and Developmental Biology</i>, vol. 11. Frontiers, 2023.","ista":"Riedl M, Sixt MK. 2023. The excitable nature of polymerizing actin and the Belousov-Zhabotinsky reaction. Frontiers in Cell and Developmental Biology. 11, 1287420.","mla":"Riedl, Michael, and Michael K. Sixt. “The Excitable Nature of Polymerizing Actin and the Belousov-Zhabotinsky Reaction.” <i>Frontiers in Cell and Developmental Biology</i>, vol. 11, 1287420, Frontiers, 2023, doi:<a href=\"https://doi.org/10.3389/fcell.2023.1287420\">10.3389/fcell.2023.1287420</a>.","ama":"Riedl M, Sixt MK. The excitable nature of polymerizing actin and the Belousov-Zhabotinsky reaction. <i>Frontiers in Cell and Developmental Biology</i>. 2023;11. doi:<a href=\"https://doi.org/10.3389/fcell.2023.1287420\">10.3389/fcell.2023.1287420</a>","apa":"Riedl, M., &#38; Sixt, M. K. (2023). The excitable nature of polymerizing actin and the Belousov-Zhabotinsky reaction. <i>Frontiers in Cell and Developmental Biology</i>. Frontiers. <a href=\"https://doi.org/10.3389/fcell.2023.1287420\">https://doi.org/10.3389/fcell.2023.1287420</a>"},"file_date_updated":"2023-11-20T08:41:15Z","article_number":"1287420","oa":1,"article_type":"original","abstract":[{"lang":"eng","text":"The intricate regulatory processes behind actin polymerization play a crucial role in cellular biology, including essential mechanisms such as cell migration or cell division. However, the self-organizing principles governing actin polymerization are still poorly understood. In this perspective article, we compare the Belousov-Zhabotinsky (BZ) reaction, a classic and well understood chemical oscillator known for its self-organizing spatiotemporal dynamics, with the excitable dynamics of polymerizing actin. While the BZ reaction originates from the domain of inorganic chemistry, it shares remarkable similarities with actin polymerization, including the characteristic propagating waves, which are influenced by geometry and external fields, and the emergent collective behavior. Starting with a general description of emerging patterns, we elaborate on single droplets or cell-level dynamics, the influence of geometric confinements and conclude with collective interactions. Comparing these two systems sheds light on the universal nature of self-organization principles in both living and inanimate systems."}],"publication":"Frontiers in Cell and Developmental Biology","author":[{"orcid":"0000-0003-4844-6311","first_name":"Michael","id":"3BE60946-F248-11E8-B48F-1D18A9856A87","last_name":"Riedl","full_name":"Riedl, Michael"},{"full_name":"Sixt, Michael K","last_name":"Sixt","first_name":"Michael K","id":"41E9FBEA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6620-9179"}],"title":"The excitable nature of polymerizing actin and the Belousov-Zhabotinsky reaction","publication_identifier":{"eissn":["2296-634X"]},"year":"2023","_id":"14555","publication_status":"published","day":"31","article_processing_charge":"Yes","date_updated":"2025-09-09T13:22:00Z","month":"10","ddc":["570"],"file":[{"checksum":"61857fc3ebf019354932e7ee684658ce","creator":"dernst","content_type":"application/pdf","file_name":"2023_FrontiersCellDevBio_Riedl.pdf","date_updated":"2023-11-20T08:41:15Z","date_created":"2023-11-20T08:41:15Z","file_id":"14561","success":1,"access_level":"open_access","relation":"main_file","file_size":2047622}],"quality_controlled":"1","oa_version":"Published Version","intvolume":"        11","date_published":"2023-10-31T00:00:00Z","type":"journal_article","external_id":{"pmid":["38020899"],"isi":["001100762800001"]},"volume":11,"language":[{"iso":"eng"}],"status":"public","has_accepted_license":"1","department":[{"_id":"MiSi"}],"corr_author":"1","scopus_import":"1","pmid":1,"doi":"10.3389/fcell.2023.1287420"}]