[{"volume":40,"external_id":{"isi":["001122489000003"],"pmid":["37988296"]},"fulldoi":"https://doi.org/10.1093/molbev/msad245","oa_version":"Published Version","language":[{"iso":"eng"}],"has_accepted_license":"1","isi":1,"date_created":"2023-11-27T16:14:37Z","doi":"10.1093/molbev/msad245","_id":"14613","article_processing_charge":"Yes","date_updated":"2026-10-01T22:31:12Z","scopus_import":"1","keyword":["Genetics","Molecular Biology","Ecology","Evolution","Behavior and Systematics"],"acknowledged_ssus":[{"_id":"ScienComp"}],"status":"public","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"article_number":"msad245","department":[{"_id":"BeVi"}],"title":"The scorpionfly (Panorpa cognata) genome highlights conserved and derived features of the peculiar dipteran X chromosome","month":"12","file":[{"access_level":"open_access","creator":"dernst","date_created":"2024-01-02T11:39:38Z","success":1,"relation":"main_file","file_id":"14727","checksum":"47c1c72fb499f26ea52d216b242208c8","file_name":"2023_MolecularBioEvo_Lasne.pdf","date_updated":"2024-01-02T11:39:38Z","content_type":"application/pdf","file_size":8623505}],"date_published":"2023-12-01T00:00:00Z","acknowledgement":"We thank the Vicoso lab for their assistance with specimen collection, and Tim Connallon for valuable comments and suggestions on earlier versions of the manuscript. Computational resources and support were provided by the Scientific Computing unit at the ISTA. This research was supported by grants from the Austrian Science Foundation to C.L.\r\n(FWF ESP 39), and to B.V. (FWF SFB F88-10).","year":"2023","type":"journal_article","article_type":"original","intvolume":" 40","issue":"12","ddc":["570"],"publication":"Molecular Biology and Evolution","day":"01","project":[{"name":"The highjacking of meiosis for asexual reproduction","_id":"34ae1506-11ca-11ed-8bc3-c14f4c474396","grant_number":"F8810"},{"grant_number":"ESP39 49461","_id":"ebb230e0-77a9-11ec-83b8-87a37e0241d3","name":"Mechanisms and Evolution of Reproductive Plasticity"}],"publication_identifier":{"issn":["0737-4038"],"eissn":["1537-1719"]},"oa":1,"quality_controlled":"1","publication_status":"published","publisher":"Oxford University Press","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","abstract":[{"lang":"eng","text":"Many insects carry an ancient X chromosome - the Drosophila Muller element F - that likely predates their origin. Interestingly, the X has undergone turnover in multiple fly species (Diptera) after being conserved for more than 450 MY. The long evolutionary distance between Diptera and other sequenced insect clades makes it difficult to infer what could have contributed to this sudden increase in rate of turnover. Here, we produce the first genome and transcriptome of a long overlooked sister-order to Diptera: Mecoptera. We compare the scorpionfly Panorpa cognata X-chromosome gene content, expression, and structure, to that of several dipteran species as well as more distantly-related insect orders (Orthoptera and Blattodea). We find high conservation of gene content between the mecopteran X and the dipteran Muller F element, as well as several shared biological features, such as the presence of dosage compensation and a low amount of genetic diversity, consistent with a low recombination rate. However, the two homologous X chromosomes differ strikingly in their size and number of genes they carry. Our results therefore support a common ancestry of the mecopteran and ancestral dipteran X chromosomes, and suggest that Muller element F shrank in size and gene content after the split of Diptera and Mecoptera, which may have contributed to its turnover in dipteran insects."}],"corr_author":"1","pmid":1,"citation":{"chicago":"Lasne, Clementine, Marwan N Elkrewi, Melissa A Toups, Lorena Alexandra Layana Franco, Ariana Macon, and Beatriz Vicoso. “The Scorpionfly (Panorpa Cognata) Genome Highlights Conserved and Derived Features of the Peculiar Dipteran X Chromosome.” Molecular Biology and Evolution. Oxford University Press, 2023. https://doi.org/10.1093/molbev/msad245.","ieee":"C. Lasne, M. N. Elkrewi, M. A. Toups, L. A. Layana Franco, A. Macon, and B. Vicoso, “The scorpionfly (Panorpa cognata) genome highlights conserved and derived features of the peculiar dipteran X chromosome,” Molecular Biology and Evolution, vol. 40, no. 12. Oxford University Press, 2023.","mla":"Lasne, Clementine, et al. “The Scorpionfly (Panorpa Cognata) Genome Highlights Conserved and Derived Features of the Peculiar Dipteran X Chromosome.” Molecular Biology and Evolution, vol. 40, no. 12, msad245, Oxford University Press, 2023, doi:10.1093/molbev/msad245.","apa":"Lasne, C., Elkrewi, M. N., Toups, M. A., Layana Franco, L. A., Macon, A., & Vicoso, B. (2023). The scorpionfly (Panorpa cognata) genome highlights conserved and derived features of the peculiar dipteran X chromosome. Molecular Biology and Evolution. Oxford University Press. https://doi.org/10.1093/molbev/msad245","ista":"Lasne C, Elkrewi MN, Toups MA, Layana Franco LA, Macon A, Vicoso B. 2023. The scorpionfly (Panorpa cognata) genome highlights conserved and derived features of the peculiar dipteran X chromosome. Molecular Biology and Evolution. 40(12), msad245.","ama":"Lasne C, Elkrewi MN, Toups MA, Layana Franco LA, Macon A, Vicoso B. The scorpionfly (Panorpa cognata) genome highlights conserved and derived features of the peculiar dipteran X chromosome. Molecular Biology and Evolution. 2023;40(12). doi:10.1093/molbev/msad245","short":"C. Lasne, M.N. Elkrewi, M.A. Toups, L.A. Layana Franco, A. Macon, B. Vicoso, Molecular Biology and Evolution 40 (2023)."},"file_date_updated":"2024-01-02T11:39:38Z","related_material":{"link":[{"description":"News on ISTA webpage","relation":"press_release","url":"https://ista.ac.at/en/news/on-the-hunt/"}],"record":[{"relation":"research_data","id":"14614","status":"public"},{"status":"public","id":"19386","relation":"dissertation_contains"}]},"author":[{"last_name":"Lasne","full_name":"Lasne, Clementine","orcid":"0000-0002-1197-8616","id":"02225f57-50d2-11eb-9ed8-8c92b9a34237","first_name":"Clementine"},{"first_name":"Marwan N","id":"0B46FACA-A8E1-11E9-9BD3-79D1E5697425","orcid":"0000-0002-5328-7231","full_name":"Elkrewi, Marwan N","last_name":"Elkrewi"},{"last_name":"Toups","full_name":"Toups, Melissa A","first_name":"Melissa A","orcid":"0000-0002-9752-7380","id":"4E099E4E-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Layana Franco","full_name":"Layana Franco, Lorena Alexandra","first_name":"Lorena Alexandra","orcid":"0000-0002-1253-6297","id":"02814589-eb8f-11eb-b029-a70074f3f18f"},{"first_name":"Ariana","id":"2A0848E2-F248-11E8-B48F-1D18A9856A87","last_name":"Macon","full_name":"Macon, Ariana"},{"full_name":"Vicoso, Beatriz","last_name":"Vicoso","first_name":"Beatriz","id":"49E1C5C6-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4579-8306"}]},{"_id":"12521","doi":"10.1093/evlett/qrac004","ec_funded":1,"article_processing_charge":"Yes (via OA deal)","date_updated":"2026-10-01T22:31:13Z","scopus_import":"1","keyword":["Genetics","Ecology","Evolution","Behavior and Systematics"],"status":"public","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"department":[{"_id":"GradSch"},{"_id":"BeVi"}],"article_number":"qrac004","volume":7,"fulldoi":"https://doi.org/10.1093/evlett/qrac004","external_id":{"pmid":["37065438"],"isi":["001021692200001"]},"language":[{"iso":"eng"}],"oa_version":"Published Version","isi":1,"has_accepted_license":"1","date_created":"2023-02-06T13:59:12Z","publication_identifier":{"issn":["2056-3744"]},"project":[{"name":"Optimal Transport and Stochastic Dynamics","call_identifier":"H2020","grant_number":"716117","_id":"256E75B8-B435-11E9-9278-68D0E5697425"},{"grant_number":"715257","call_identifier":"H2020","_id":"250BDE62-B435-11E9-9278-68D0E5697425","name":"Prevalence and Influence of Sexual Antagonism on Genome Evolution"}],"oa":1,"quality_controlled":"1","publication_status":"published","publisher":"Oxford University Press","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","corr_author":"1","pmid":1,"abstract":[{"lang":"eng","text":"Differentiated X chromosomes are expected to have higher rates of adaptive divergence than autosomes, if new beneficial mutations are recessive (the “faster-X effect”), largely because these mutations are immediately exposed to selection in males. The evolution of X chromosomes after they stop recombining in males, but before they become hemizygous, has not been well explored theoretically. We use the diffusion approximation to infer substitution rates of beneficial and deleterious mutations under such a scenario. Our results show that selection is less efficient on diploid X loci than on autosomal and hemizygous X loci under a wide range of parameters. This “slower-X” effect is stronger for genes affecting primarily (or only) male fitness, and for sexually antagonistic genes. These unusual dynamics suggest that some of the peculiar features of X chromosomes, such as the differential accumulation of genes with sex-specific functions, may start arising earlier than previously appreciated."}],"author":[{"full_name":"Mrnjavac, Andrea","last_name":"Mrnjavac","id":"353FAC84-AE61-11E9-8BFC-00D3E5697425","first_name":"Andrea"},{"last_name":"Khudiakova","full_name":"Khudiakova, Kseniia","first_name":"Kseniia","id":"4E6DC800-AE37-11E9-AC72-31CAE5697425","orcid":"0000-0002-6246-1465"},{"first_name":"Nicholas H","id":"4880FE40-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8548-5240","last_name":"Barton","full_name":"Barton, Nicholas H"},{"orcid":"0000-0002-4579-8306","first_name":"Beatriz","id":"49E1C5C6-F248-11E8-B48F-1D18A9856A87","last_name":"Vicoso","full_name":"Vicoso, Beatriz"}],"related_material":{"record":[{"status":"public","id":"18531","relation":"dissertation_contains"}]},"file_date_updated":"2023-08-16T11:43:33Z","citation":{"mla":"Mrnjavac, Andrea, et al. “Slower-X: Reduced Efficiency of Selection in the Early Stages of X Chromosome Evolution.” Evolution Letters, vol. 7, no. 1, qrac004, Oxford University Press, 2023, doi:10.1093/evlett/qrac004.","ieee":"A. Mrnjavac, K. Khudiakova, N. H. Barton, and B. Vicoso, “Slower-X: Reduced efficiency of selection in the early stages of X chromosome evolution,” Evolution Letters, vol. 7, no. 1. Oxford University Press, 2023.","chicago":"Mrnjavac, Andrea, Kseniia Khudiakova, Nicholas H Barton, and Beatriz Vicoso. “Slower-X: Reduced Efficiency of Selection in the Early Stages of X Chromosome Evolution.” Evolution Letters. Oxford University Press, 2023. https://doi.org/10.1093/evlett/qrac004.","apa":"Mrnjavac, A., Khudiakova, K., Barton, N. H., & Vicoso, B. (2023). Slower-X: Reduced efficiency of selection in the early stages of X chromosome evolution. Evolution Letters. Oxford University Press. https://doi.org/10.1093/evlett/qrac004","ista":"Mrnjavac A, Khudiakova K, Barton NH, Vicoso B. 2023. Slower-X: Reduced efficiency of selection in the early stages of X chromosome evolution. Evolution Letters. 7(1), qrac004.","ama":"Mrnjavac A, Khudiakova K, Barton NH, Vicoso B. Slower-X: Reduced efficiency of selection in the early stages of X chromosome evolution. Evolution Letters. 2023;7(1). doi:10.1093/evlett/qrac004","short":"A. Mrnjavac, K. Khudiakova, N.H. Barton, B. Vicoso, Evolution Letters 7 (2023)."},"month":"02","title":"Slower-X: Reduced efficiency of selection in the early stages of X chromosome evolution","date_published":"2023-02-01T00:00:00Z","acknowledgement":"We thank the Vicoso and Barton groups and ISTA Scientific Computing Unit. We also thank two anonymous reviewers for their valuable comments. This work was supported by the European Research Council under the European Union’s Horizon 2020 research and innovation program (grant agreements no. 715257 and no. 716117).","file":[{"file_name":"2023_EvLetters_Mrnjavac.pdf","checksum":"a240a041cb9b9b7c8ba93a4706674a3f","file_id":"14068","date_updated":"2023-08-16T11:43:33Z","file_size":2592189,"content_type":"application/pdf","date_created":"2023-08-16T11:43:33Z","creator":"dernst","access_level":"open_access","success":1,"relation":"main_file"}],"year":"2023","article_type":"original","intvolume":" 7","type":"journal_article","issue":"1","ddc":["570"],"day":"01","publication":"Evolution Letters"},{"oa_version":"Preprint","language":[{"iso":"eng"}],"main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2212.13468"}],"date_created":"2023-10-29T23:01:17Z","alternative_title":["PMLR"],"volume":202,"external_id":{"arxiv":["2212.13468"]},"status":"public","department":[{"_id":"MaMo"},{"_id":"DaAl"}],"_id":"14459","article_processing_charge":"No","conference":{"start_date":"2023-07-23","end_date":"2023-07-29","location":"Honolulu, Hawaii, HI, United States","name":"ICML: International Conference on Machine Learning"},"date_updated":"2026-10-01T22:31:15Z","scopus_import":"1","page":"31151-31209","type":"conference","intvolume":" 202","publication":"Proceedings of the 40th International Conference on Machine Learning","day":"30","title":"Fundamental limits of two-layer autoencoders, and achieving them with gradient methods","month":"07","acknowledgement":"Aleksandr Shevchenko, Kevin Kogler and Marco Mondelli are supported by the 2019 Lopez-Loreta Prize. Hamed Hassani acknowledges the support by the NSF CIF award (1910056) and the NSF Institute for CORE Emerging Methods in Data Science (EnCORE).","date_published":"2023-07-30T00:00:00Z","year":"2023","publisher":"ML Research Press","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","abstract":[{"text":"Autoencoders are a popular model in many branches of machine learning and lossy data compression. However, their fundamental limits, the performance of gradient methods and the features learnt during optimization remain poorly understood, even in the two-layer setting. In fact, earlier work has considered either linear autoencoders or specific training regimes (leading to vanishing or diverging compression rates). Our paper addresses this gap by focusing on non-linear two-layer autoencoders trained in the challenging proportional regime in which the input dimension scales linearly with the size of the representation. Our results characterize the minimizers of the population risk, and show that such minimizers are achieved by gradient methods; their structure is also unveiled, thus leading to a concise description of the features obtained via training. For the special case of a sign activation function, our analysis establishes the fundamental limits for the lossy compression of Gaussian sources via (shallow) autoencoders. Finally, while the results are proved for Gaussian data, numerical simulations on standard datasets display the universality of the theoretical predictions.","lang":"eng"}],"corr_author":"1","related_material":{"record":[{"relation":"dissertation_contains","status":"public","id":"17465"}]},"citation":{"chicago":"Shevchenko, Alexander, Kevin Kögler, Hamed Hassani, and Marco Mondelli. “Fundamental Limits of Two-Layer Autoencoders, and Achieving Them with Gradient Methods.” In Proceedings of the 40th International Conference on Machine Learning, 202:31151–209. ML Research Press, 2023.","ieee":"A. Shevchenko, K. Kögler, H. Hassani, and M. Mondelli, “Fundamental limits of two-layer autoencoders, and achieving them with gradient methods,” in Proceedings of the 40th International Conference on Machine Learning, Honolulu, Hawaii, HI, United States, 2023, vol. 202, pp. 31151–31209.","mla":"Shevchenko, Alexander, et al. “Fundamental Limits of Two-Layer Autoencoders, and Achieving Them with Gradient Methods.” Proceedings of the 40th International Conference on Machine Learning, vol. 202, ML Research Press, 2023, pp. 31151–209.","apa":"Shevchenko, A., Kögler, K., Hassani, H., & Mondelli, M. (2023). Fundamental limits of two-layer autoencoders, and achieving them with gradient methods. In Proceedings of the 40th International Conference on Machine Learning (Vol. 202, pp. 31151–31209). Honolulu, Hawaii, HI, United States: ML Research Press.","ista":"Shevchenko A, Kögler K, Hassani H, Mondelli M. 2023. Fundamental limits of two-layer autoencoders, and achieving them with gradient methods. Proceedings of the 40th International Conference on Machine Learning. ICML: International Conference on Machine Learning, PMLR, vol. 202, 31151–31209.","ama":"Shevchenko A, Kögler K, Hassani H, Mondelli M. Fundamental limits of two-layer autoencoders, and achieving them with gradient methods. In: Proceedings of the 40th International Conference on Machine Learning. Vol 202. ML Research Press; 2023:31151-31209.","short":"A. Shevchenko, K. Kögler, H. Hassani, M. Mondelli, in:, Proceedings of the 40th International Conference on Machine Learning, ML Research Press, 2023, pp. 31151–31209."},"author":[{"last_name":"Shevchenko","full_name":"Shevchenko, Aleksandr","id":"F2B06EC2-C99E-11E9-89F0-752EE6697425","first_name":"Aleksandr"},{"first_name":"Kevin","id":"94ec913c-dc85-11ea-9058-e5051ab2428b","full_name":"Kögler, Kevin","last_name":"Kögler"},{"full_name":"Hassani, Hamed","last_name":"Hassani","first_name":"Hamed"},{"full_name":"Mondelli, Marco","last_name":"Mondelli","id":"27EB676C-8706-11E9-9510-7717E6697425","orcid":"0000-0002-3242-7020","first_name":"Marco"}],"publication_identifier":{"eissn":["2640-3498"]},"project":[{"_id":"059876FA-7A3F-11EA-A408-12923DDC885E","name":"Prix Lopez-Loretta 2019 - Marco Mondelli"}],"arxiv":1,"oa":1,"quality_controlled":"1","publication_status":"published"},{"day":"20","publication":"Physical Review Letters","ddc":["530"],"issue":"16","intvolume":" 131","article_type":"original","type":"journal_article","year":"2023","date_published":"2023-10-20T00:00:00Z","file":[{"checksum":"1a419e25b762aadffbcc8eb2e609bd97","file_name":"2023_PhysRevLetters_Binysh.pdf","file_id":"14524","date_updated":"2023-11-13T09:12:58Z","file_size":724098,"content_type":"application/pdf","date_created":"2023-11-13T09:12:58Z","access_level":"open_access","creator":"dernst","relation":"main_file","success":1}],"acknowledgement":"We are grateful to Dominic Vella, Jens Eggers, John Kolinski, Joshua Dijksman, and Daniel Bonn for insightful discussions. J. B. and A. S. acknowledge the support of the Engineering and Physical Sciences Research Council (EPSRC) through New Investigator Award No. EP/\r\nT000961/1. A. S. acknowledges the support of Royal Society under Grant No. RGS/R2/202135. J. E. S. acknowledges EPSRC Grants No. EP/N016602/1, EP/S022848/1, EP/S029966/1, and EP/P031684/1.","title":"Modeling Leidenfrost levitation of soft elastic solids","month":"10","author":[{"full_name":"Binysh, Jack","last_name":"Binysh","first_name":"Jack"},{"first_name":"Indrajit","full_name":"Chakraborty, Indrajit","last_name":"Chakraborty"},{"last_name":"Chubynsky","full_name":"Chubynsky, Mykyta V.","first_name":"Mykyta V."},{"id":"b6798902-eea0-11ea-9cbc-a8e14286c631","first_name":"Vicente L","last_name":"Diaz Melian","full_name":"Diaz Melian, Vicente L"},{"full_name":"Waitukaitis, Scott R","last_name":"Waitukaitis","orcid":"0000-0002-2299-3176","id":"3A1FFC16-F248-11E8-B48F-1D18A9856A87","first_name":"Scott R"},{"last_name":"Sprittles","full_name":"Sprittles, James E.","first_name":"James E."},{"last_name":"Souslov","full_name":"Souslov, Anton","first_name":"Anton"}],"citation":{"short":"J. Binysh, I. Chakraborty, M.V. Chubynsky, V.L. Diaz Melian, S.R. Waitukaitis, J.E. Sprittles, A. Souslov, Physical Review Letters 131 (2023).","ama":"Binysh J, Chakraborty I, Chubynsky MV, et al. Modeling Leidenfrost levitation of soft elastic solids. Physical Review Letters. 2023;131(16). doi:10.1103/PhysRevLett.131.168201","ista":"Binysh J, Chakraborty I, Chubynsky MV, Diaz Melian VL, Waitukaitis SR, Sprittles JE, Souslov A. 2023. Modeling Leidenfrost levitation of soft elastic solids. Physical Review Letters. 131(16), 168201.","apa":"Binysh, J., Chakraborty, I., Chubynsky, M. V., Diaz Melian, V. L., Waitukaitis, S. R., Sprittles, J. E., & Souslov, A. (2023). Modeling Leidenfrost levitation of soft elastic solids. Physical Review Letters. American Physical Society. https://doi.org/10.1103/PhysRevLett.131.168201","mla":"Binysh, Jack, et al. “Modeling Leidenfrost Levitation of Soft Elastic Solids.” Physical Review Letters, vol. 131, no. 16, 168201, American Physical Society, 2023, doi:10.1103/PhysRevLett.131.168201.","ieee":"J. Binysh et al., “Modeling Leidenfrost levitation of soft elastic solids,” Physical Review Letters, vol. 131, no. 16. American Physical Society, 2023.","chicago":"Binysh, Jack, Indrajit Chakraborty, Mykyta V. Chubynsky, Vicente L Diaz Melian, Scott R Waitukaitis, James E. Sprittles, and Anton Souslov. “Modeling Leidenfrost Levitation of Soft Elastic Solids.” Physical Review Letters. American Physical Society, 2023. https://doi.org/10.1103/PhysRevLett.131.168201."},"related_material":{"record":[{"status":"public","id":"14523","relation":"research_data"},{"status":"public","id":"23005","relation":"dissertation_contains"}]},"file_date_updated":"2023-11-13T09:12:58Z","pmid":1,"abstract":[{"lang":"eng","text":"The elastic Leidenfrost effect occurs when a vaporizable soft solid is lowered onto a hot surface. Evaporative flow couples to elastic deformation, giving spontaneous bouncing or steady-state floating. The effect embodies an unexplored interplay between thermodynamics, elasticity, and lubrication: despite being observed, its basic theoretical description remains a challenge. Here, we provide a theory of elastic Leidenfrost floating. As weight increases, a rigid solid sits closer to the hot surface. By contrast, we discover an elasticity-dominated regime where the heavier the solid, the higher it floats. This geometry-governed behavior is reminiscent of the dynamics of large liquid Leidenfrost drops. We show that this elastic regime is characterized by Hertzian behavior of the solid’s underbelly and derive how the float height scales with materials parameters. Introducing a dimensionless elastic Leidenfrost number, we capture the crossover between rigid and Hertzian behavior. Our results provide theoretical underpinning for recent experiments, and point to the design of novel soft machines."}],"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","publisher":"American Physical Society","publication_status":"published","quality_controlled":"1","oa":1,"publication_identifier":{"issn":["0031-9007"],"eissn":["1079-7114"]},"date_created":"2023-11-12T23:00:55Z","isi":1,"has_accepted_license":"1","language":[{"iso":"eng"}],"oa_version":"Published Version","fulldoi":"https://doi.org/10.1103/PhysRevLett.131.168201","external_id":{"isi":["001164388300007"],"pmid":["37925690"]},"volume":131,"department":[{"_id":"ScWa"}],"article_number":"168201","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"status":"public","scopus_import":"1","date_updated":"2026-10-02T08:44:47Z","article_processing_charge":"Yes (in subscription journal)","_id":"14514","doi":"10.1103/PhysRevLett.131.168201"},{"department":[{"_id":"FrPe"}],"author":[{"id":"3caa3f91-1f03-11ee-96ce-e0e553054d6e","first_name":"Thomas","orcid":"0000-0001-7640-6152","full_name":"Shaw, Thomas","last_name":"Shaw"},{"full_name":"Buri, Pascal","last_name":"Buri","id":"317987aa-9421-11ee-ac5a-b941b041abba","first_name":"Pascal"},{"first_name":"Michael","last_name":"McCarthy","full_name":"McCarthy, Michael"},{"full_name":"Miles, Evan","last_name":"Miles","first_name":"Evan"},{"full_name":"Pellicciotti, Francesca","last_name":"Pellicciotti","first_name":"Francesca","orcid":"0000-0002-5554-8087","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70"}],"citation":{"apa":"Shaw, T., Buri, P., McCarthy, M., Miles, E., & Pellicciotti, F. (2023). Air temperature and near-surface meteorology datasets on three Swiss glaciers - Extreme 2022 Summer. Zenodo. https://doi.org/10.5281/ZENODO.8277285","ieee":"T. Shaw, P. Buri, M. McCarthy, E. Miles, and F. Pellicciotti, “Air temperature and near-surface meteorology datasets on three Swiss glaciers - Extreme 2022 Summer.” Zenodo, 2023.","mla":"Shaw, Thomas, et al. Air Temperature and Near-Surface Meteorology Datasets on Three Swiss Glaciers - Extreme 2022 Summer. Zenodo, 2023, doi:10.5281/ZENODO.8277285.","chicago":"Shaw, Thomas, Pascal Buri, Michael McCarthy, Evan Miles, and Francesca Pellicciotti. “Air Temperature and Near-Surface Meteorology Datasets on Three Swiss Glaciers - Extreme 2022 Summer.” Zenodo, 2023. https://doi.org/10.5281/ZENODO.8277285.","short":"T. Shaw, P. Buri, M. McCarthy, E. Miles, F. Pellicciotti, (2023).","ama":"Shaw T, Buri P, McCarthy M, Miles E, Pellicciotti F. Air temperature and near-surface meteorology datasets on three Swiss glaciers - Extreme 2022 Summer. 2023. doi:10.5281/ZENODO.8277285","ista":"Shaw T, Buri P, McCarthy M, Miles E, Pellicciotti F. 2023. Air temperature and near-surface meteorology datasets on three Swiss glaciers - Extreme 2022 Summer, Zenodo, 10.5281/ZENODO.8277285."},"related_material":{"record":[{"relation":"used_in_publication","status":"public","id":"14885"}]},"corr_author":"1","abstract":[{"text":"GLACIER METEOROLOGICAL DATA SWISS ALPS -2022\r\n","lang":"eng"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","publisher":"Zenodo","date_updated":"2026-10-02T08:57:44Z","oa":1,"article_processing_charge":"No","doi":"10.5281/ZENODO.8277285","_id":"14919","day":"23","date_created":"2024-01-31T12:08:26Z","ddc":["550"],"main_file_link":[{"open_access":"1","url":"https://doi.org/10.5281/ZENODO.8277285"}],"type":"research_data_reference","oa_version":"Published Version","fulldoi":"https://doi.org/10.5281/ZENODO.8277285","year":"2023","date_published":"2023-08-23T00:00:00Z","title":"Air temperature and near-surface meteorology datasets on three Swiss glaciers - Extreme 2022 Summer","month":"08"},{"OA_place":"repository","publisher":"Zenodo","status":"public","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","abstract":[{"text":"%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\r\n GLACIER METEOROLOGICAL DATA\r\n SWISS ALPS -2022\r\n%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\r\nData gathered and structured by Thomas Shaw (WSL, Switzerland (until Oct 2022)).\r\n\r\nOn and off-glacier meteorological data were gathered and analysed as part of a Marie-Curie project 'TEMPEST' (tempestglacier.com).\r\nThe dataset consists of hourly low-cost AWS (Davis Vantage Pro2) and simple temperature ('T-')logger (Onset TidBitv2) sensor records on three glaciers in the Swiss Alps (Canton Valais).\r\n\r\nThe glaciers are:\r\nHaut Glacier d'Arolla (45.967°N, 7.526°E)\r\nGlacier d'Otemma (45.956°N, 7.454°E)\r\nGlacier du Corbassière (45.975°N, 7.303°E)\r\n\r\nData are provided in individual Excel files per glacier that contain all hourly data for the sub-period of comparison (11 August-18 September, 2022).\r\nData are quality controlled and checked for obvious errors. Any uncertain values are set to NaN.\r\nAir temperature data at 'T-Logger' stations were corrected for heating errors using the comparison of measurements in artificially (AWS) and naturally ventilated (T-Logger) radiation shields on Arolla and Corbassiere glaciers.\r\nA multiple linear regression model was applied to estimate these differences at all T-Loggers on all glaciers as a function of incoming shortwave radiation (MeteoSwiss station-derived) and wind speed (measured at AWS).\r\n\r\nEach Excel file contains a 'META' tab for simple metadata related to station locations (latitude 'LAT' (°), longitude 'LON' (°), elevation 'ELE' (m a.s.l.) and flowpath length 'FPL' (m)) and a 'DATA' tab for the hourly data. \r\nSuffixes to the station names in each column provide the variable measured at that site:\r\n'TA' - 2m air temperature (°C)\r\n'TA_Hi' - Maximum air temperature for timestep (°C)\r\n'TA_Lo' - Minimum air temperature for timestep (°C)\r\n'RH' - 2m relative humiditiy (%)\r\n'FF' - Wind speed (m s^-1)\r\n'FF_Hi' - Maximum wind speed for timestep (m s^-1)\r\n'FF_Lo' - Minimum wind speed for timestep (m s^-1)\r\n'DIR' - Wind direction (°)\r\n'DEW' - Dewpoint temperature (°C)\r\n'PRESS' - Air pressure (mbar)\r\n'CHILL' - Calculated wind chill temperature (°C)\r\n'Heat_idx' - Calculated heat index (°C)\r\n'THSW' - A calculated index that uses humidity and temperature like for the Heat Index, but also includes the heating effects of sunshine and the cooling effects of wind (like Wind Chill) to calculate an apparent temperature of what it \"feels\" like out in the shade\r\n\r\nWind speeds and direction measured at off-glacier sites 'OG' are for the lower off-glacier station ('OG_Low'). ","lang":"eng"}],"related_material":{"record":[{"id":"14885","status":"public","relation":"used_in_publication"}]},"citation":{"ista":"Shaw TE, Buri P, McCarthy M, Miles ES, Pelliciotti F. 2023. Air temperature and near-surface meteorology datasets on three Swiss glaciers - Extreme 2022 Summer, Zenodo, 10.5281/zenodo.8277284.","ama":"Shaw TE, Buri P, McCarthy M, Miles ES, Pelliciotti F. Air temperature and near-surface meteorology datasets on three Swiss glaciers - Extreme 2022 Summer. 2023. doi:10.5281/zenodo.8277284","short":"T.E. Shaw, P. Buri, M. McCarthy, E.S. Miles, F. Pelliciotti, (2023).","mla":"Shaw, Thomas E., et al. Air Temperature and Near-Surface Meteorology Datasets on Three Swiss Glaciers - Extreme 2022 Summer. Zenodo, 2023, doi:10.5281/zenodo.8277284.","chicago":"Shaw, Thomas E., Pascal Buri, Michael McCarthy, Evan S. Miles, and Francesca Pelliciotti. “Air Temperature and Near-Surface Meteorology Datasets on Three Swiss Glaciers - Extreme 2022 Summer.” Zenodo, 2023. https://doi.org/10.5281/zenodo.8277284.","ieee":"T. E. Shaw, P. Buri, M. McCarthy, E. S. Miles, and F. Pelliciotti, “Air temperature and near-surface meteorology datasets on three Swiss glaciers - Extreme 2022 Summer.” Zenodo, 2023.","apa":"Shaw, T. E., Buri, P., McCarthy, M., Miles, E. S., & Pelliciotti, F. (2023). Air temperature and near-surface meteorology datasets on three Swiss glaciers - Extreme 2022 Summer. Zenodo. https://doi.org/10.5281/zenodo.8277284"},"department":[{"_id":"FrPe"}],"author":[{"full_name":"Shaw, Thomas E.","last_name":"Shaw","first_name":"Thomas E."},{"full_name":"Buri, Pascal","last_name":"Buri","first_name":"Pascal"},{"last_name":"McCarthy","full_name":"McCarthy, Michael","first_name":"Michael"},{"first_name":"Evan S.","full_name":"Miles, Evan S.","last_name":"Miles"},{"last_name":"Pelliciotti","full_name":"Pelliciotti, Francesca","first_name":"Francesca"}],"_id":"23030","doi":"10.5281/zenodo.8277284","oa":1,"article_processing_charge":"No","date_updated":"2026-10-02T08:59:03Z","oa_version":"None","type":"research_data_reference","main_file_link":[{"url":"https://doi.org/10.5281/zenodo.8277284","open_access":"1"}],"ddc":["550"],"OA_type":"green","date_created":"2026-10-02T08:58:12Z","day":"23","month":"08","title":"Air temperature and near-surface meteorology datasets on three Swiss glaciers - Extreme 2022 Summer","date_published":"2023-08-23T00:00:00Z","acknowledgement":"This work was funded by the EU Horizon 2020 Marie Skłodowska-Curie Actions Grant 101026058.","fulldoi":"https://doi.org/10.5281/zenodo.8277284","year":"2023"},{"date_published":"2023-06-05T00:00:00Z","month":"06","title":"A 3D glacier dynamics-line plume model to estimate the frontal ablation of Hansbreen","year":"2023","fulldoi":"https://doi.org/10.5281/zenodo.8005257","main_file_link":[{"url":"https://doi.org/10.5281/zenodo.8005257","open_access":"1"}],"type":"research_data_reference","oa_version":"None","day":"05","date_created":"2026-10-02T09:16:51Z","OA_type":"green","ddc":["550"],"article_processing_charge":"No","oa":1,"_id":"23031","doi":"10.5281/zenodo.8005257","contributor":[{"last_name":"Muñoz Hermosilla","contributor_type":"contact_person","first_name":"José M"}],"date_updated":"2026-10-02T09:16:55Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","status":"public","OA_place":"repository","publisher":"Zenodo","author":[{"full_name":"Muñoz Hermosilla, José M","last_name":"Muñoz Hermosilla","first_name":"José M"}],"department":[{"_id":"FrPe"}],"citation":{"mla":"Muñoz Hermosilla, José M. A 3D Glacier Dynamics-Line Plume Model to Estimate the Frontal Ablation of Hansbreen. Zenodo, 2023, doi:10.5281/zenodo.8005257.","chicago":"Muñoz Hermosilla, José M. “A 3D Glacier Dynamics-Line Plume Model to Estimate the Frontal Ablation of Hansbreen.” Zenodo, 2023. https://doi.org/10.5281/zenodo.8005257.","ieee":"J. M. Muñoz Hermosilla, “A 3D glacier dynamics-line plume model to estimate the frontal ablation of Hansbreen.” Zenodo, 2023.","apa":"Muñoz Hermosilla, J. M. (2023). A 3D glacier dynamics-line plume model to estimate the frontal ablation of Hansbreen. Zenodo. https://doi.org/10.5281/zenodo.8005257","ista":"Muñoz Hermosilla JM. 2023. A 3D glacier dynamics-line plume model to estimate the frontal ablation of Hansbreen, Zenodo, 10.5281/zenodo.8005257.","ama":"Muñoz Hermosilla JM. A 3D glacier dynamics-line plume model to estimate the frontal ablation of Hansbreen. 2023. doi:10.5281/zenodo.8005257","short":"J.M. Muñoz Hermosilla, (2023)."},"related_material":{"record":[{"status":"public","id":"18628","relation":"used_in_publication"}]},"abstract":[{"text":"There are 4 tar.xz files with the result of the model for the paper: A 3D glacier dynamics-line plume model to estimate the frontal ablation of Hansbreen, Svalbard. These archives can be unzipped on Linux using the tar command, or on other systems using a specific software.\r\n\r\nFrontPositions includes data files with the coordinates of the nodes of the front positons.\r\n\r\nCalvingStats includes txt files with some characteristics of the calving events.\r\n\r\nHydrologyOutput includes csv files with the main results of the hydrological model.\r\n\r\nModelOutput include output and visualization files of the model results. The .vtu and .pvtu files are best viewed in the software Paraview.","lang":"eng"}]},{"main_file_link":[{"url":"https://doi.org/10.5281/zenodo.8005258","open_access":"1"}],"type":"research_data_reference","oa_version":"Published Version","day":"05","date_created":"2024-12-09T09:33:07Z","ddc":["550"],"date_published":"2023-06-05T00:00:00Z","title":"A 3D glacier dynamics-line plume model to estimate the frontal ablation of Hansbreen","month":"06","year":"2023","fulldoi":"https://doi.org/10.5281/ZENODO.8005257","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","publisher":"Zenodo","OA_place":"repository","author":[{"last_name":"Muñoz Hermosilla","full_name":"Muñoz Hermosilla, José M","orcid":"0000-0002-1990-8508","id":"e1037a6d-646e-11ef-b402-e0ed9ab0901e","first_name":"José M"}],"department":[{"_id":"FrPe"}],"related_material":{"record":[{"status":"public","id":"18628","relation":"research_data"}]},"citation":{"ista":"Muñoz Hermosilla JM. 2023. A 3D glacier dynamics-line plume model to estimate the frontal ablation of Hansbreen, Zenodo, 10.5281/ZENODO.8005257.","ama":"Muñoz Hermosilla JM. A 3D glacier dynamics-line plume model to estimate the frontal ablation of Hansbreen. 2023. doi:10.5281/ZENODO.8005257","short":"J.M. Muñoz Hermosilla, (2023).","chicago":"Muñoz Hermosilla, José M. “A 3D Glacier Dynamics-Line Plume Model to Estimate the Frontal Ablation of Hansbreen.” Zenodo, 2023. https://doi.org/10.5281/ZENODO.8005257.","ieee":"J. M. Muñoz Hermosilla, “A 3D glacier dynamics-line plume model to estimate the frontal ablation of Hansbreen.” Zenodo, 2023.","mla":"Muñoz Hermosilla, José M. A 3D Glacier Dynamics-Line Plume Model to Estimate the Frontal Ablation of Hansbreen. Zenodo, 2023, doi:10.5281/ZENODO.8005257.","apa":"Muñoz Hermosilla, J. M. (2023). A 3D glacier dynamics-line plume model to estimate the frontal ablation of Hansbreen. Zenodo. https://doi.org/10.5281/ZENODO.8005257"},"corr_author":"1","abstract":[{"text":"There are 4 tar.xz files with the result of the model for the paper: A 3D glacier dynamics-line plume model to estimate the frontal ablation of Hansbreen, Svalbard. ","lang":"eng"}],"oa":1,"article_processing_charge":"No","_id":"18634","doi":"10.5281/ZENODO.8005257","date_updated":"2026-10-02T09:16:15Z"},{"fulldoi":"https://doi.org/10.6084/m9.figshare.24772872","year":"2023","date_published":"2023-12-08T00:00:00Z","title":"A hybrid pathway for self-sustained luminescence - Raw data","month":"12","date_created":"2026-10-02T09:22:23Z","day":"08","ddc":["580"],"OA_type":"green","type":"research_data_reference","main_file_link":[{"url":"https://doi.org/10.6084/m9.figshare.24772872","open_access":"1"}],"oa_version":"None","date_updated":"2026-10-02T09:22:30Z","oa":1,"article_processing_charge":"No","doi":"10.6084/m9.figshare.24772872","_id":"23032","citation":{"chicago":"Sarkisyan, Karen. “A Hybrid Pathway for Self-Sustained Luminescence - Raw Data.” Figshare, 2023. https://doi.org/10.6084/m9.figshare.24772872.","ieee":"K. Sarkisyan, “A hybrid pathway for self-sustained luminescence - Raw data.” Figshare, 2023.","mla":"Sarkisyan, Karen. A Hybrid Pathway for Self-Sustained Luminescence - Raw Data. Figshare, 2023, doi:10.6084/m9.figshare.24772872.","apa":"Sarkisyan, K. (2023). A hybrid pathway for self-sustained luminescence - Raw data. Figshare. https://doi.org/10.6084/m9.figshare.24772872","ista":"Sarkisyan K. 2023. A hybrid pathway for self-sustained luminescence - Raw data, Figshare, 10.6084/m9.figshare.24772872.","short":"K. Sarkisyan, (2023).","ama":"Sarkisyan K. A hybrid pathway for self-sustained luminescence - Raw data. 2023. doi:10.6084/m9.figshare.24772872"},"related_material":{"record":[{"relation":"used_in_publication","id":"15179","status":"public"}]},"author":[{"full_name":"Sarkisyan, Karen","last_name":"Sarkisyan","first_name":"Karen"}],"department":[{"_id":"FyKo"}],"abstract":[{"lang":"eng","text":"Datasets in .csv or .xlsx format sorted into folders by figures. In some cases additional files with roi/well-to-sample mapping were provided.\r\n\r\nFor more details contact authors."}],"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","OA_place":"repository","publisher":"Figshare","status":"public"},{"language":[{"iso":"eng"}],"oa_version":"Published Version","has_accepted_license":"1","date_created":"2024-01-22T12:02:28Z","volume":33,"fulldoi":"https://doi.org/10.1093/eurpub/ckad160.597","status":"public","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)","short":"CC BY-NC (4.0)","image":"/images/cc_by_nc.png"},"department":[{"_id":"GaTk"}],"article_number":"ckad160.597","doi":"10.1093/eurpub/ckad160.597","_id":"14862","article_processing_charge":"No","date_updated":"2026-10-02T10:12:19Z","keyword":["Public Health","Environmental and Occupational Health"],"intvolume":" 33","type":"conference_abstract","ddc":["570"],"issue":"Supplement_2","day":"01","publication":"European Journal of Public Health","license":"https://creativecommons.org/licenses/by-nc/4.0/","month":"10","title":"Complex vaccination strategies prevent the emergence of vaccine resistance","file":[{"content_type":"application/pdf","file_size":71057,"file_id":"14882","checksum":"98706755bb4cc5d553818ade7660a7d2","file_name":"2023_EurJourPublicHealth_Rella.pdf","date_updated":"2024-01-24T11:12:33Z","relation":"main_file","success":1,"creator":"dernst","access_level":"open_access","date_created":"2024-01-24T11:12:33Z"}],"date_published":"2023-10-01T00:00:00Z","year":"2023","publisher":"Oxford University Press","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","corr_author":"1","author":[{"last_name":"Rella","full_name":"Rella, Simon","first_name":"Simon","id":"B4765ACA-AA38-11E9-AC9A-0930E6697425"},{"first_name":"Y","last_name":"Kulikova","full_name":"Kulikova, Y"},{"full_name":"Minnegalieva, Aygul","last_name":"Minnegalieva","id":"87DF77F0-1D9A-11EA-B6AE-CE443DDC885E","first_name":"Aygul"},{"id":"44FDEF62-F248-11E8-B48F-1D18A9856A87","first_name":"Fyodor","orcid":"0000-0001-8243-4694","full_name":"Kondrashov, Fyodor","last_name":"Kondrashov"}],"related_material":{"record":[{"status":"public","id":"18307","relation":"used_in_publication"}]},"file_date_updated":"2024-01-24T11:12:33Z","citation":{"apa":"Rella, S., Kulikova, Y., Minnegalieva, A., & Kondrashov, F. (2023). Complex vaccination strategies prevent the emergence of vaccine resistance. In European Journal of Public Health (Vol. 33). Oxford University Press. https://doi.org/10.1093/eurpub/ckad160.597","mla":"Rella, Simon, et al. “Complex Vaccination Strategies Prevent the Emergence of Vaccine Resistance.” European Journal of Public Health, vol. 33, no. Supplement_2, ckad160.597, Oxford University Press, 2023, doi:10.1093/eurpub/ckad160.597.","chicago":"Rella, Simon, Y Kulikova, Aygul Minnegalieva, and Fyodor Kondrashov. “Complex Vaccination Strategies Prevent the Emergence of Vaccine Resistance.” In European Journal of Public Health, Vol. 33. Oxford University Press, 2023. https://doi.org/10.1093/eurpub/ckad160.597.","ieee":"S. Rella, Y. Kulikova, A. Minnegalieva, and F. Kondrashov, “Complex vaccination strategies prevent the emergence of vaccine resistance,” in European Journal of Public Health, 2023, vol. 33, no. Supplement_2.","short":"S. Rella, Y. Kulikova, A. Minnegalieva, F. Kondrashov, in:, European Journal of Public Health, Oxford University Press, 2023.","ama":"Rella S, Kulikova Y, Minnegalieva A, Kondrashov F. Complex vaccination strategies prevent the emergence of vaccine resistance. In: European Journal of Public Health. Vol 33. Oxford University Press; 2023. doi:10.1093/eurpub/ckad160.597","ista":"Rella S, Kulikova Y, Minnegalieva A, Kondrashov F. 2023. Complex vaccination strategies prevent the emergence of vaccine resistance. European Journal of Public Health. vol. 33, ckad160.597."},"publication_identifier":{"issn":["1101-1262"],"eissn":["1464-360X"]},"oa":1,"quality_controlled":"1","publication_status":"published"},{"project":[{"call_identifier":"H2020","grant_number":"862046","_id":"237E5020-32DE-11EA-91FC-C7463DDC885E","name":"TOPOLOGICALLY PROTECTED AND SCALABLE QUANTUM BITS"},{"name":"Towards scalable hut wire quantum devices","call_identifier":"FWF","grant_number":"P32235","_id":"237B3DA4-32DE-11EA-91FC-C7463DDC885E"},{"_id":"bd8bd29e-d553-11ed-ba76-f0070d4b237a","grant_number":"P36507","name":"Merging spin and superconducting qubits in planar Ge"},{"grant_number":"F8606","_id":"34a66131-11ca-11ed-8bc3-a31681c6b03e","name":"Center for Correlated Quantum Materials and Solid State Quantum Systems: Conventional and unconventional topological superconductors"},{"_id":"eb9b30ac-77a9-11ec-83b8-871f581d53d2","name":"Protected states of quantum matter"}],"arxiv":1,"oa":1,"publication_status":"draft","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","abstract":[{"lang":"eng","text":"Superconductor/semiconductor hybrid devices have attracted increasing\r\ninterest in the past years. Superconducting electronics aims to complement\r\nsemiconductor technology, while hybrid architectures are at the forefront of\r\nnew ideas such as topological superconductivity and protected qubits. In this\r\nwork, we engineer the induced superconductivity in two-dimensional germanium\r\nhole gas by varying the distance between the quantum well and the aluminum. We\r\ndemonstrate a hard superconducting gap and realize an electrically and flux\r\ntunable superconducting diode using a superconducting quantum interference\r\ndevice (SQUID). This allows to tune the current phase relation (CPR), to a\r\nregime where single Cooper pair tunneling is suppressed, creating a $ \\sin\r\n\\left( 2 \\varphi \\right)$ CPR. Shapiro experiments complement this\r\ninterpretation and the microwave drive allows to create a diode with $ \\approx\r\n100 \\%$ efficiency. The reported results open up the path towards monolithic\r\nintegration of spin qubit devices, microwave resonators and (protected)\r\nsuperconducting qubits on a silicon technology compatible platform."}],"corr_author":"1","citation":{"apa":"Valentini, M., Sagi, O., Baghumyan, L., Gijsel, T. de, Jung, J., Calcaterra, S., … Katsaros, G. (n.d.). Radio frequency driven superconducting diode and parity conserving Cooper pair transport in a two-dimensional germanium hole gas. arXiv. https://doi.org/10.48550/arXiv.2306.07109","chicago":"Valentini, Marco, Oliver Sagi, Levon Baghumyan, Thijs de Gijsel, Jason Jung, Stefano Calcaterra, Andrea Ballabio, et al. “Radio Frequency Driven Superconducting Diode and Parity Conserving Cooper Pair Transport in a Two-Dimensional Germanium Hole Gas.” ArXiv, n.d. https://doi.org/10.48550/arXiv.2306.07109.","mla":"Valentini, Marco, et al. “Radio Frequency Driven Superconducting Diode and Parity Conserving Cooper Pair Transport in a Two-Dimensional Germanium Hole Gas.” ArXiv, 2306.07109, doi:10.48550/arXiv.2306.07109.","ieee":"M. Valentini et al., “Radio frequency driven superconducting diode and parity conserving Cooper pair transport in a two-dimensional germanium hole gas,” arXiv. .","ama":"Valentini M, Sagi O, Baghumyan L, et al. Radio frequency driven superconducting diode and parity conserving Cooper pair transport in a two-dimensional germanium hole gas. arXiv. doi:10.48550/arXiv.2306.07109","short":"M. Valentini, O. Sagi, L. Baghumyan, T. de Gijsel, J. Jung, S. Calcaterra, A. Ballabio, J.A. Servin, K. Aggarwal, M. Janik, T. Adletzberger, R.S. Souto, M. Leijnse, J. Danon, C. Schrade, E. Bakkers, D. Chrastina, G. Isella, G. Katsaros, ArXiv (n.d.).","ista":"Valentini M, Sagi O, Baghumyan L, Gijsel T de, Jung J, Calcaterra S, Ballabio A, Servin JA, Aggarwal K, Janik M, Adletzberger T, Souto RS, Leijnse M, Danon J, Schrade C, Bakkers E, Chrastina D, Isella G, Katsaros G. Radio frequency driven superconducting diode and parity conserving Cooper pair transport in a two-dimensional germanium hole gas. arXiv, 2306.07109."},"related_material":{"record":[{"id":"13286","status":"public","relation":"dissertation_contains"},{"relation":"later_version","id":"14793","status":"public"}]},"author":[{"id":"C0BB2FAC-D767-11E9-B658-BC13E6697425","first_name":"Marco","last_name":"Valentini","full_name":"Valentini, Marco"},{"last_name":"Sagi","full_name":"Sagi, Oliver","id":"71616374-A8E9-11E9-A7CA-09ECE5697425","first_name":"Oliver"},{"first_name":"Levon","full_name":"Baghumyan, Levon","last_name":"Baghumyan"},{"last_name":"Gijsel","full_name":"Gijsel, Thijs de","first_name":"Thijs de"},{"id":"4C9ACE7A-F248-11E8-B48F-1D18A9856A87","first_name":"Jason","last_name":"Jung","full_name":"Jung, Jason"},{"last_name":"Calcaterra","full_name":"Calcaterra, Stefano","first_name":"Stefano"},{"full_name":"Ballabio, Andrea","last_name":"Ballabio","first_name":"Andrea"},{"first_name":"Juan Aguilera","full_name":"Servin, Juan Aguilera","last_name":"Servin"},{"full_name":"Aggarwal, Kushagra","last_name":"Aggarwal","id":"b22ab905-3539-11eb-84c3-fc159dcd79cb","orcid":"0000-0001-9985-9293","first_name":"Kushagra"},{"full_name":"Janik, Marian","last_name":"Janik","first_name":"Marian","id":"396A1950-F248-11E8-B48F-1D18A9856A87","orcid":"0009-0003-9037-8831"},{"full_name":"Adletzberger, Thomas","last_name":"Adletzberger","id":"38756BB2-F248-11E8-B48F-1D18A9856A87","first_name":"Thomas"},{"first_name":"Rubén Seoane","full_name":"Souto, Rubén Seoane","last_name":"Souto"},{"first_name":"Martin","full_name":"Leijnse, Martin","last_name":"Leijnse"},{"first_name":"Jeroen","full_name":"Danon, Jeroen","last_name":"Danon"},{"first_name":"Constantin","last_name":"Schrade","full_name":"Schrade, Constantin"},{"full_name":"Bakkers, Erik","last_name":"Bakkers","first_name":"Erik"},{"first_name":"Daniel","full_name":"Chrastina, Daniel","last_name":"Chrastina"},{"full_name":"Isella, Giovanni","last_name":"Isella","first_name":"Giovanni"},{"last_name":"Katsaros","full_name":"Katsaros, Georgios","id":"38DB5788-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8342-202X","first_name":"Georgios"}],"title":"Radio frequency driven superconducting diode and parity conserving Cooper pair transport in a two-dimensional germanium hole gas","month":"06","date_published":"2023-06-13T00:00:00Z","acknowledgement":"The authors acknowledge Alexander Brinkmann, Alessandro Crippa, Andrew Higginbotham, Andrea Iorio, Giordano\r\nScappucci and Christian Schonenberger for helpful discussions. We thank Marcel Verheijen for the support in the\r\nTEM analysis. This research and related results were made\r\npossible with the support of the NOMIS Foundation. It was\r\nsupported by the Scientific Service Units of ISTA through resources provided by the MIBA Machine Shop and the\r\nnanofabrication facility, the European Union’s Horizon 2020\r\nresearch and innovation programme under Grant Agreement\r\nNo 862046, the HORIZON-RIA 101069515 project and the\r\nFWF Projects #P-32235, #P-36507 and #F-8606. R.S.S.\r\nacknowledges Spanish CM “Talento Program” Project No.\r\n2022-T1/IND-24070.","year":"2023","type":"preprint","ddc":["530"],"publication":"arXiv","day":"13","_id":"13312","doi":"10.48550/arXiv.2306.07109","ec_funded":1,"article_processing_charge":"No","date_updated":"2026-10-02T10:23:31Z","keyword":["Mesoscale and Nanoscale Physics"],"acknowledged_ssus":[{"_id":"M-Shop"},{"_id":"NanoFab"}],"OA_place":"repository","status":"public","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"article_number":"2306.07109","department":[{"_id":"GeKa"},{"_id":"M-Shop"}],"external_id":{"arxiv":["2306.07109"]},"fulldoi":"https://doi.org/10.48550/arXiv.2306.07109","oa_version":"Preprint","language":[{"iso":"eng"}],"main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2306.07109"}],"date_created":"2023-07-26T11:17:20Z"},{"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","status":"public","OA_place":"repository","publisher":"Zenodo","author":[{"full_name":"Valentini, Marco","last_name":"Valentini","first_name":"Marco"}],"department":[{"_id":"GeKa"}],"citation":{"apa":"Valentini, M. (2023). Data repository for “Parity-conserving Cooper-pair transport and ideal superconducting diode in planar Germanium.” Zenodo. https://doi.org/10.5281/zenodo.10119345","mla":"Valentini, Marco. Data Repository for “Parity-Conserving Cooper-Pair Transport and Ideal Superconducting Diode in Planar Germanium.” Zenodo, 2023, doi:10.5281/zenodo.10119345.","ieee":"M. Valentini, “Data repository for ‘Parity-conserving Cooper-pair transport and ideal superconducting diode in planar Germanium.’” Zenodo, 2023.","chicago":"Valentini, Marco. “Data Repository for ‘Parity-Conserving Cooper-Pair Transport and Ideal Superconducting Diode in Planar Germanium.’” Zenodo, 2023. https://doi.org/10.5281/zenodo.10119345.","short":"M. Valentini, (2023).","ama":"Valentini M. Data repository for “Parity-conserving Cooper-pair transport and ideal superconducting diode in planar Germanium.” 2023. doi:10.5281/zenodo.10119345","ista":"Valentini M. 2023. Data repository for ‘Parity-conserving Cooper-pair transport and ideal superconducting diode in planar Germanium’, Zenodo, 10.5281/zenodo.10119345."},"related_material":{"record":[{"id":"14793","status":"public","relation":"used_in_publication"}]},"article_processing_charge":"No","oa":1,"doi":"10.5281/zenodo.10119345","_id":"23036","date_updated":"2026-10-02T10:23:54Z","main_file_link":[{"url":"https://doi.org/10.5281/zenodo.10119345","open_access":"1"}],"type":"research_data_reference","oa_version":"None","day":"13","date_created":"2026-10-02T10:23:47Z","OA_type":"green","ddc":["530"],"date_published":"2023-11-13T00:00:00Z","month":"11","title":"Data repository for 'Parity-conserving Cooper-pair transport and ideal superconducting diode in planar Germanium'","year":"2023","fulldoi":"https://doi.org/10.5281/zenodo.10119345"},{"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"acknowledged_ssus":[{"_id":"M-Shop"},{"_id":"NanoFab"}],"status":"public","department":[{"_id":"GradSch"},{"_id":"AnHi"},{"_id":"JoFi"}],"ec_funded":1,"article_processing_charge":"Yes (in subscription journal)","_id":"14032","doi":"10.1038/s41567-023-02161-w","keyword":["General Physics and Astronomy"],"page":"1630-1635","scopus_import":"1","date_updated":"2026-10-02T11:12:07Z","oa_version":"Published Version","language":[{"iso":"eng"}],"date_created":"2023-08-11T07:41:17Z","has_accepted_license":"1","isi":1,"external_id":{"isi":["001054563800006"]},"fulldoi":"https://doi.org/10.1038/s41567-023-02161-w","volume":19,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"Springer Nature","related_material":{"record":[{"status":"public","id":"17881","relation":"dissertation_contains"}]},"file_date_updated":"2024-01-29T11:25:38Z","citation":{"ista":"Mukhopadhyay S, Senior JL, Saez Mollejo J, Puglia D, Zemlicka M, Fink JM, Higginbotham AP. 2023. Superconductivity from a melted insulator in Josephson junction arrays. Nature Physics. 19, 1630–1635.","ama":"Mukhopadhyay S, Senior JL, Saez Mollejo J, et al. Superconductivity from a melted insulator in Josephson junction arrays. Nature Physics. 2023;19:1630-1635. doi:10.1038/s41567-023-02161-w","short":"S. Mukhopadhyay, J.L. Senior, J. Saez Mollejo, D. Puglia, M. Zemlicka, J.M. Fink, A.P. Higginbotham, Nature Physics 19 (2023) 1630–1635.","chicago":"Mukhopadhyay, Soham, Jorden L Senior, Jaime Saez Mollejo, Denise Puglia, Martin Zemlicka, Johannes M Fink, and Andrew P Higginbotham. “Superconductivity from a Melted Insulator in Josephson Junction Arrays.” Nature Physics. Springer Nature, 2023. https://doi.org/10.1038/s41567-023-02161-w.","mla":"Mukhopadhyay, Soham, et al. “Superconductivity from a Melted Insulator in Josephson Junction Arrays.” Nature Physics, vol. 19, Springer Nature, 2023, pp. 1630–35, doi:10.1038/s41567-023-02161-w.","ieee":"S. Mukhopadhyay et al., “Superconductivity from a melted insulator in Josephson junction arrays,” Nature Physics, vol. 19. Springer Nature, pp. 1630–1635, 2023.","apa":"Mukhopadhyay, S., Senior, J. L., Saez Mollejo, J., Puglia, D., Zemlicka, M., Fink, J. M., & Higginbotham, A. P. (2023). Superconductivity from a melted insulator in Josephson junction arrays. Nature Physics. Springer Nature. https://doi.org/10.1038/s41567-023-02161-w"},"author":[{"full_name":"Mukhopadhyay, Soham","last_name":"Mukhopadhyay","id":"FDE60288-A89D-11E9-947F-1AF6E5697425","orcid":"0000-0001-5263-5559","first_name":"Soham"},{"last_name":"Senior","full_name":"Senior, Jorden L","first_name":"Jorden L","orcid":"0000-0002-0672-9295","id":"5479D234-2D30-11EA-89CC-40953DDC885E"},{"full_name":"Saez Mollejo, Jaime","last_name":"Saez Mollejo","id":"e0390f72-f6e0-11ea-865d-862393336714","first_name":"Jaime"},{"full_name":"Puglia, Denise","last_name":"Puglia","id":"4D495994-AE37-11E9-AC72-31CAE5697425","orcid":"0000-0003-1144-2763","first_name":"Denise"},{"first_name":"Martin","id":"2DCF8DE6-F248-11E8-B48F-1D18A9856A87","orcid":"0009-0005-0878-3032","full_name":"Zemlicka, Martin","last_name":"Zemlicka"},{"last_name":"Fink","full_name":"Fink, Johannes M","first_name":"Johannes M","orcid":"0000-0001-8112-028X","id":"4B591CBA-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Higginbotham, Andrew P","last_name":"Higginbotham","orcid":"0000-0003-2607-2363","first_name":"Andrew P","id":"4AD6785A-F248-11E8-B48F-1D18A9856A87"}],"abstract":[{"text":"Arrays of Josephson junctions are governed by a competition between superconductivity and repulsive Coulomb interactions, and are expected to exhibit diverging low-temperature resistance when interactions exceed a critical level. Here we report a study of the transport and microwave response of Josephson arrays with interactions exceeding this level. Contrary to expectations, we observe that the array resistance drops dramatically as the temperature is decreased—reminiscent of superconducting behaviour—and then saturates at low temperature. Applying a magnetic field, we eventually observe a transition to a highly resistive regime. These observations can be understood within a theoretical picture that accounts for the effect of thermal fluctuations on the insulating phase. On the basis of the agreement between experiment and theory, we suggest that apparent superconductivity in our Josephson arrays arises from melting the zero-temperature insulator.","lang":"eng"}],"corr_author":"1","oa":1,"publication_identifier":{"issn":["1745-2473"],"eissn":["1745-2481"]},"project":[{"_id":"0aa3608a-070f-11eb-9043-e9cd8a2bd931","grant_number":"P33692","name":"Cavity electromechanics across a quantum phase transition"},{"_id":"260C2330-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","grant_number":"754411","name":"ISTplus - Postdoctoral Fellowships"},{"name":"Protected states of quantum matter","_id":"eb9b30ac-77a9-11ec-83b8-871f581d53d2"}],"publication_status":"published","quality_controlled":"1","type":"journal_article","article_type":"original","intvolume":" 19","publication":"Nature Physics","day":"01","ddc":["530"],"file":[{"relation":"main_file","success":1,"creator":"dernst","access_level":"open_access","date_created":"2024-01-29T11:25:38Z","content_type":"application/pdf","file_size":1977706,"date_updated":"2024-01-29T11:25:38Z","file_id":"14899","file_name":"2023_NaturePhysics_Mukhopadhyay.pdf","checksum":"1fc86d71bfbf836e221c1e925343adc5"}],"date_published":"2023-11-01T00:00:00Z","acknowledgement":"We thank D. Haviland, J. Pekola, C. Ciuti, A. Bubis and A. Shnirman for helpful feedback on the paper. This research was supported by the Scientific Service Units of IST Austria through resources provided by the MIBA Machine Shop and the Nanofabrication Facility. Work supported by the Austrian FWF grant P33692-N (S.M., J.S. and A.P.H.), the European Union’s Horizon 2020 Research and Innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 754411 (J.S.) and a NOMIS foundation research grant (J.M.F. and A.P.H.).","title":"Superconductivity from a melted insulator in Josephson junction arrays","month":"11","year":"2023"},{"language":[{"iso":"eng"}],"oa_version":"Published Version","date_created":"2022-03-04T08:53:37Z","isi":1,"has_accepted_license":"1","fulldoi":"https://doi.org/10.1002/glia.24101","external_id":{"isi":["000708025800001"],"pmid":["34661306"]},"volume":70,"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)","short":"CC BY-NC (4.0)","image":"/images/cc_by_nc.png"},"status":"public","department":[{"_id":"GaNo"}],"article_processing_charge":"No","doi":"10.1002/glia.24101","_id":"10818","page":"173-195","keyword":["Cellular and Molecular Neuroscience","Neurology"],"date_updated":"2024-10-09T21:04:02Z","scopus_import":"1","article_type":"original","intvolume":" 70","type":"journal_article","day":"01","publication":"Glia","ddc":["570"],"issue":"1","acknowledgement":"The work was supported by a grant from MIUR (PRIN 2017HPTFFC_003) to Davide Ragozzino and in part by funds to Silvia Di Angelantonio (CrestOptics-IIT JointLab for Advanced Microscopy) and Daniele Caprioli (Istituto Pasteur-Fondazione Cenci Bolognetti). Bernadette Basilico, and Laura Ferrucci were supported by the PhD program in Clinical-Experimental Neuroscience and Psychiatry, Sapienza University, Rome; Caterina Sanchini was supported by the PhD program in Life Science, Sapienza University, Rome and by the Italian Institute of Technology, Rome. The authors thank Alessandro Felici, Claudia Valeri, Arsenio Armagno, and Senthilkumar Deivasigamani for help with animal husbandry and transgenic colonies management. They also wish to thank Piotr Bregestovski and Michal Schwartz for helpful discussions and criticism. PLX5622 was provided under Materials Transfer Agreement by Plexxikon Inc. (Berkeley, CA). Open Access Funding provided by Universita degli Studi di Roma La Sapienza within the CRUI-CARE Agreement.","file":[{"checksum":"f10a897290e66c0a062e04ba91db6c17","file_name":"2021_Glia_Basilico.pdf","file_id":"10819","date_updated":"2022-03-04T08:55:27Z","file_size":5340294,"content_type":"application/pdf","date_created":"2022-03-04T08:55:27Z","access_level":"open_access","creator":"dernst","success":1,"relation":"main_file"}],"date_published":"2022-01-01T00:00:00Z","month":"01","title":"Microglia control glutamatergic synapses in the adult mouse hippocampus","year":"2022","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","publisher":"Wiley","author":[{"id":"36035796-5ACA-11E9-A75E-7AF2E5697425","first_name":"Bernadette","orcid":"0000-0003-1843-3173","full_name":"Basilico, Bernadette","last_name":"Basilico"},{"full_name":"Ferrucci, Laura","last_name":"Ferrucci","first_name":"Laura"},{"last_name":"Ratano","full_name":"Ratano, Patrizia","first_name":"Patrizia"},{"last_name":"Golia","full_name":"Golia, Maria T.","first_name":"Maria T."},{"first_name":"Alfonso","last_name":"Grimaldi","full_name":"Grimaldi, Alfonso"},{"full_name":"Rosito, Maria","last_name":"Rosito","first_name":"Maria"},{"full_name":"Ferretti, Valentina","last_name":"Ferretti","first_name":"Valentina"},{"first_name":"Ingrid","last_name":"Reverte","full_name":"Reverte, Ingrid"},{"first_name":"Caterina","full_name":"Sanchini, Caterina","last_name":"Sanchini"},{"first_name":"Maria C.","full_name":"Marrone, Maria C.","last_name":"Marrone"},{"first_name":"Maria","last_name":"Giubettini","full_name":"Giubettini, Maria"},{"first_name":"Valeria","last_name":"De Turris","full_name":"De Turris, Valeria"},{"full_name":"Salerno, Debora","last_name":"Salerno","first_name":"Debora"},{"full_name":"Garofalo, Stefano","last_name":"Garofalo","first_name":"Stefano"},{"full_name":"St‐Pierre, Marie‐Kim","last_name":"St‐Pierre","first_name":"Marie‐Kim"},{"full_name":"Carrier, Micael","last_name":"Carrier","first_name":"Micael"},{"full_name":"Renzi, Massimiliano","last_name":"Renzi","first_name":"Massimiliano"},{"first_name":"Francesca","last_name":"Pagani","full_name":"Pagani, Francesca"},{"first_name":"Brijesh","full_name":"Modi, Brijesh","last_name":"Modi"},{"last_name":"Raspa","full_name":"Raspa, Marcello","first_name":"Marcello"},{"full_name":"Scavizzi, Ferdinando","last_name":"Scavizzi","first_name":"Ferdinando"},{"last_name":"Gross","full_name":"Gross, Cornelius T.","first_name":"Cornelius T."},{"full_name":"Marinelli, Silvia","last_name":"Marinelli","first_name":"Silvia"},{"last_name":"Tremblay","full_name":"Tremblay, Marie‐Ève","first_name":"Marie‐Ève"},{"last_name":"Caprioli","full_name":"Caprioli, Daniele","first_name":"Daniele"},{"last_name":"Maggi","full_name":"Maggi, Laura","first_name":"Laura"},{"first_name":"Cristina","full_name":"Limatola, Cristina","last_name":"Limatola"},{"first_name":"Silvia","last_name":"Di Angelantonio","full_name":"Di Angelantonio, Silvia"},{"first_name":"Davide","last_name":"Ragozzino","full_name":"Ragozzino, Davide"}],"file_date_updated":"2022-03-04T08:55:27Z","citation":{"apa":"Basilico, B., Ferrucci, L., Ratano, P., Golia, M. T., Grimaldi, A., Rosito, M., … Ragozzino, D. (2022). Microglia control glutamatergic synapses in the adult mouse hippocampus. Glia. Wiley. https://doi.org/10.1002/glia.24101","ieee":"B. Basilico et al., “Microglia control glutamatergic synapses in the adult mouse hippocampus,” Glia, vol. 70, no. 1. Wiley, pp. 173–195, 2022.","mla":"Basilico, Bernadette, et al. “Microglia Control Glutamatergic Synapses in the Adult Mouse Hippocampus.” Glia, vol. 70, no. 1, Wiley, 2022, pp. 173–95, doi:10.1002/glia.24101.","chicago":"Basilico, Bernadette, Laura Ferrucci, Patrizia Ratano, Maria T. Golia, Alfonso Grimaldi, Maria Rosito, Valentina Ferretti, et al. “Microglia Control Glutamatergic Synapses in the Adult Mouse Hippocampus.” Glia. Wiley, 2022. https://doi.org/10.1002/glia.24101.","short":"B. Basilico, L. Ferrucci, P. Ratano, M.T. Golia, A. Grimaldi, M. Rosito, V. Ferretti, I. Reverte, C. Sanchini, M.C. Marrone, M. Giubettini, V. De Turris, D. Salerno, S. Garofalo, M. St‐Pierre, M. Carrier, M. Renzi, F. Pagani, B. Modi, M. Raspa, F. Scavizzi, C.T. Gross, S. Marinelli, M. Tremblay, D. Caprioli, L. Maggi, C. Limatola, S. Di Angelantonio, D. Ragozzino, Glia 70 (2022) 173–195.","ama":"Basilico B, Ferrucci L, Ratano P, et al. Microglia control glutamatergic synapses in the adult mouse hippocampus. Glia. 2022;70(1):173-195. doi:10.1002/glia.24101","ista":"Basilico B, Ferrucci L, Ratano P, Golia MT, Grimaldi A, Rosito M, Ferretti V, Reverte I, Sanchini C, Marrone MC, Giubettini M, De Turris V, Salerno D, Garofalo S, St‐Pierre M, Carrier M, Renzi M, Pagani F, Modi B, Raspa M, Scavizzi F, Gross CT, Marinelli S, Tremblay M, Caprioli D, Maggi L, Limatola C, Di Angelantonio S, Ragozzino D. 2022. Microglia control glutamatergic synapses in the adult mouse hippocampus. Glia. 70(1), 173–195."},"corr_author":"1","pmid":1,"abstract":[{"lang":"eng","text":"Microglia cells are active players in regulating synaptic development and plasticity in the brain. However, how they influence the normal functioning of synapses is largely unknown. In this study, we characterized the effects of pharmacological microglia depletion, achieved by administration of PLX5622, on hippocampal CA3-CA1 synapses of adult wild type mice. Following microglial depletion, we observed a reduction of spontaneous and evoked glutamatergic activity associated with a decrease of dendritic spine density. We also observed the appearance of immature synaptic features and higher levels of plasticity. Microglia depleted mice showed a deficit in the acquisition of the Novel Object Recognition task. These events were accompanied by hippocampal astrogliosis, although in the absence ofneuroinflammatory condition. PLX-induced synaptic changes were absent in Cx3cr1−/− mice, highlighting the role of CX3CL1/CX3CR1 axis in microglia control of synaptic functioning. Remarkably, microglia repopulation after PLX5622 withdrawal was associated with the recovery of hippocampal synapses and learning functions. Altogether, these data demonstrate that microglia contribute to normal synaptic functioning in the adult brain and that their removal induces reversible changes in organization and activity of glutamatergic synapses."}],"oa":1,"publication_identifier":{"issn":["0894-1491"],"eissn":["1098-1136"]},"publication_status":"published","quality_controlled":"1"},{"publication":"IUTAM Laminar-Turbulent Transition","day":"01","OA_type":"closed access","type":"conference","intvolume":" 38","year":"2022","acknowledgement":"The work is supported by the National Key Research and Development Program of China (No. 2016YFA0401200), the National Natural Science Foundation of China (Grant Nos. 91952202 and 11402167).","date_published":"2022-01-01T00:00:00Z","title":"Effects of streaky structures on the instability of supersonic boundary layers","month":"01","citation":{"chicago":"Liu, Jianxin, Elena Marensi, and Xuesong Wu. “Effects of Streaky Structures on the Instability of Supersonic Boundary Layers.” In IUTAM Laminar-Turbulent Transition, 38:587–98. Springer Nature, 2022. https://doi.org/10.1007/978-3-030-67902-6_51.","mla":"Liu, Jianxin, et al. “Effects of Streaky Structures on the Instability of Supersonic Boundary Layers.” IUTAM Laminar-Turbulent Transition, vol. 38, Springer Nature, 2022, pp. 587–98, doi:10.1007/978-3-030-67902-6_51.","ieee":"J. Liu, E. Marensi, and X. Wu, “Effects of streaky structures on the instability of supersonic boundary layers,” in IUTAM Laminar-Turbulent Transition, London, United Kingdom, 2022, vol. 38, pp. 587–598.","apa":"Liu, J., Marensi, E., & Wu, X. (2022). Effects of streaky structures on the instability of supersonic boundary layers. In IUTAM Laminar-Turbulent Transition (Vol. 38, pp. 587–598). London, United Kingdom: Springer Nature. https://doi.org/10.1007/978-3-030-67902-6_51","ista":"Liu J, Marensi E, Wu X. 2022. Effects of streaky structures on the instability of supersonic boundary layers. IUTAM Laminar-Turbulent Transition. IUTAM Symposium, IUTAM, vol. 38, 587–598.","short":"J. Liu, E. Marensi, X. Wu, in:, IUTAM Laminar-Turbulent Transition, Springer Nature, 2022, pp. 587–598.","ama":"Liu J, Marensi E, Wu X. Effects of streaky structures on the instability of supersonic boundary layers. In: IUTAM Laminar-Turbulent Transition. Vol 38. Springer Nature; 2022:587-598. doi:10.1007/978-3-030-67902-6_51"},"author":[{"last_name":"Liu","full_name":"Liu, Jianxin","first_name":"Jianxin"},{"id":"0BE7553A-1004-11EA-B805-18983DDC885E","first_name":"Elena","orcid":"0000-0001-7173-4923","last_name":"Marensi","full_name":"Marensi, Elena"},{"full_name":"Wu, Xuesong","last_name":"Wu","first_name":"Xuesong"}],"abstract":[{"lang":"eng","text":"Streaky structures in the boundary layers are often generated by surface roughness elements and/or free-stream turbulence, and are known to have significant effects on boundary-layer instability. In this paper, we investigate the impact of two forms of streaks on the instability of supersonic boundary layers. The first concerns the streaks generated by an array of spanwise periodic and streamwise elongated surface roughness elements, and our interest is how these streaks influence the lower-branch viscous first modes, whose characteristic wavelength and frequency are on the classical triple-deck scales. By adapting the triple-deck theory in the incompressible regime to the supersonic one, we first derived a simplified system which allows for efficient calculation of the streaks. The asymptotic analysis simplifies a bi-global eigenvalue problem to a one-dimensional problem in the spanwise direction, showing that the instability is controlled at leading order solely by the spanwise-dependent wall shear. In the fundamental configuration, the streaks stabilize first modes at low frequencies but destabilize the high-frequency ones. In the subharmonic configuration, the streaks generally destabilize the first mode across the entire frequency band. Importantly, the spanwise even modes are of radiating nature, i.e. they emit acoustic waves spontaneously to the far field. Streaks of the second form are generated by low-frequency vortical disturbances representing free-stream turbulence. They alter the flow in the entire layer and their effects on instability are investigated by solving the inviscid bi-global eigenvalue problem. Different from the incompressible case, a multitude of compressible instability modes exists, of which the dominant mode is an inviscid instability associated with the spanwise shear. In addition, there exists a separate branch of instability modes that have smaller growth rates but are spontaneously radiating."}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"Springer Nature","publication_status":"published","quality_controlled":"1","publication_identifier":{"eisbn":["9783030679026"],"eissn":["1875-3493"],"isbn":["9783030679019"],"issn":["1875-3507"]},"date_created":"2022-03-04T09:14:34Z","isi":1,"oa_version":"None","language":[{"iso":"eng"}],"external_id":{"isi":["000709087600051"]},"fulldoi":"https://doi.org/10.1007/978-3-030-67902-6_51","alternative_title":["IUTAM"],"volume":38,"department":[{"_id":"BjHo"}],"status":"public","page":"587-598","date_updated":"2025-05-20T06:08:26Z","scopus_import":"1","conference":{"location":"London, United Kingdom","name":"IUTAM Symposium","start_date":"2019-09-02","end_date":"2019-09-06"},"article_processing_charge":"No","_id":"10820","doi":"10.1007/978-3-030-67902-6_51"},{"oa":1,"publication_identifier":{"issn":["0092-8674"],"eissn":["1097-4172"]},"project":[{"call_identifier":"H2020","grant_number":"851288","_id":"05943252-7A3F-11EA-A408-12923DDC885E","name":"Design Principles of Branching Morphogenesis"}],"publication_status":"published","quality_controlled":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"Cell Press","author":[{"first_name":"Ayaka","last_name":"Yanagida","full_name":"Yanagida, Ayaka"},{"last_name":"Corujo-Simon","full_name":"Corujo-Simon, Elena","first_name":"Elena"},{"last_name":"Revell","full_name":"Revell, Christopher K.","first_name":"Christopher K."},{"last_name":"Sahu","full_name":"Sahu, Preeti","first_name":"Preeti","id":"55BA52EE-A185-11EA-88FD-18AD3DDC885E"},{"first_name":"Giuliano G.","full_name":"Stirparo, Giuliano G.","last_name":"Stirparo"},{"full_name":"Aspalter, Irene M.","last_name":"Aspalter","first_name":"Irene M."},{"first_name":"Alex K.","full_name":"Winkel, Alex K.","last_name":"Winkel"},{"first_name":"Ruby","full_name":"Peters, Ruby","last_name":"Peters"},{"first_name":"Henry","last_name":"De Belly","full_name":"De Belly, Henry"},{"first_name":"Davide A.D.","full_name":"Cassani, Davide A.D.","last_name":"Cassani"},{"full_name":"Achouri, Sarra","last_name":"Achouri","first_name":"Sarra"},{"last_name":"Blumenfeld","full_name":"Blumenfeld, Raphael","first_name":"Raphael"},{"first_name":"Kristian","last_name":"Franze","full_name":"Franze, Kristian"},{"orcid":"0000-0001-6005-1561","id":"3A9DB764-F248-11E8-B48F-1D18A9856A87","first_name":"Edouard B","full_name":"Hannezo, Edouard B","last_name":"Hannezo"},{"full_name":"Paluch, Ewa K.","last_name":"Paluch","first_name":"Ewa K."},{"first_name":"Jennifer","last_name":"Nichols","full_name":"Nichols, Jennifer"},{"first_name":"Kevin J.","full_name":"Chalut, Kevin J.","last_name":"Chalut"}],"citation":{"apa":"Yanagida, A., Corujo-Simon, E., Revell, C. K., Sahu, P., Stirparo, G. G., Aspalter, I. M., … Chalut, K. J. (2022). Cell surface fluctuations regulate early embryonic lineage sorting. Cell. Cell Press. https://doi.org/10.1016/j.cell.2022.01.022","mla":"Yanagida, Ayaka, et al. “Cell Surface Fluctuations Regulate Early Embryonic Lineage Sorting.” Cell, vol. 185, no. 5, Cell Press, 2022, p. 777–793.e20, doi:10.1016/j.cell.2022.01.022.","chicago":"Yanagida, Ayaka, Elena Corujo-Simon, Christopher K. Revell, Preeti Sahu, Giuliano G. Stirparo, Irene M. Aspalter, Alex K. Winkel, et al. “Cell Surface Fluctuations Regulate Early Embryonic Lineage Sorting.” Cell. Cell Press, 2022. https://doi.org/10.1016/j.cell.2022.01.022.","ieee":"A. Yanagida et al., “Cell surface fluctuations regulate early embryonic lineage sorting,” Cell, vol. 185, no. 5. Cell Press, p. 777–793.e20, 2022.","ama":"Yanagida A, Corujo-Simon E, Revell CK, et al. Cell surface fluctuations regulate early embryonic lineage sorting. Cell. 2022;185(5):777-793.e20. doi:10.1016/j.cell.2022.01.022","short":"A. Yanagida, E. Corujo-Simon, C.K. Revell, P. Sahu, G.G. Stirparo, I.M. Aspalter, A.K. Winkel, R. Peters, H. De Belly, D.A.D. Cassani, S. Achouri, R. Blumenfeld, K. Franze, E.B. Hannezo, E.K. Paluch, J. Nichols, K.J. Chalut, Cell 185 (2022) 777–793.e20.","ista":"Yanagida A, Corujo-Simon E, Revell CK, Sahu P, Stirparo GG, Aspalter IM, Winkel AK, Peters R, De Belly H, Cassani DAD, Achouri S, Blumenfeld R, Franze K, Hannezo EB, Paluch EK, Nichols J, Chalut KJ. 2022. Cell surface fluctuations regulate early embryonic lineage sorting. Cell. 185(5), 777–793.e20."},"file_date_updated":"2022-03-07T07:55:23Z","pmid":1,"abstract":[{"lang":"eng","text":"In development, lineage segregation is coordinated in time and space. An important example is the mammalian inner cell mass, in which the primitive endoderm (PrE, founder of the yolk sac) physically segregates from the epiblast (EPI, founder of the fetus). While the molecular requirements have been well studied, the physical mechanisms determining spatial segregation between EPI and PrE remain elusive. Here, we investigate the mechanical basis of EPI and PrE sorting. We find that rather than the differences in static cell surface mechanical parameters as in classical sorting models, it is the differences in surface fluctuations that robustly ensure physical lineage sorting. These differential surface fluctuations systematically correlate with differential cellular fluidity, which we propose together constitute a non-equilibrium sorting mechanism for EPI and PrE lineages. By combining experiments and modeling, we identify cell surface dynamics as a key factor orchestrating the correct spatial segregation of the founder embryonic lineages."}],"date_published":"2022-02-22T00:00:00Z","file":[{"content_type":"application/pdf","file_size":8478995,"file_id":"10831","checksum":"ae305060e8031297771b89dae9e36a29","file_name":"2022_Cell_Yanagida.pdf","date_updated":"2022-03-07T07:55:23Z","success":1,"relation":"main_file","access_level":"open_access","creator":"dernst","date_created":"2022-03-07T07:55:23Z"}],"acknowledgement":"We are grateful to H. Niwa for Dox regulatable PB vector; G. Charras for EzrinT567D cDNA; K. Jones for tdTomato ESCs, R26-Confetti ESCs, and laboratory assistance; M. Kinoshita for pPB-CAG-H2B-BFP plasmid; P. Humphreys and D. Clements for imaging support; G. Chu, P. Attlesey, and staff for animal husbandry; S. Pallett for laboratory assistance; C. Mulas for critical feedback on the project; T. Boroviak for single-cell RNA-seq; the EMBL Genomics Core Facility for sequencing; and M. Merkel for developing and sharing the original version of the 3D Voronoi code. This work was financially supported by BBSRC ( BB/Moo4023/1 and BB/T007044/1 to K.J.C. and J.N., Alert16 grant BB/R000042 to E.K.P.), Leverhulme Trust ( RPG-2014-080 to K.J.C. and J.N.), European Research Council ( 772798 -CellFateTech to K.J.C., 311637 -MorphoCorDiv and 820188 -NanoMechShape to E.K.P., Starting Grant 851288 to E.H., and 772426 -MeChemGui to K.F.), the Isaac Newton Trust (to E.K.P.), Medical Research Council UK (MRC program award MC_UU_00012/5 to E.K.P.), the European Union’s Horizon 2020 research and innovation program under the Marie Sklodowska-Curie grant agreement no. 641639 ( ITN Biopol , H.D.B. and E.K.P.), the Alexander von Humboldt Foundation (Alexander von Humboldt Professorship to K.F.), EMBO ALTF 522-2021 (to P.S.), Centre for Trophoblast Research (Next Generation fellowship to S.A.), and JSPS Overseas Research Fellowships (to A.Y.). The Wellcome-MRC Cambridge Stem Cell Institute receives core funding from Wellcome Trust ( 203151/Z/16/Z ) and MRC ( MC_PC_17230 ). For the purpose of open access, the author has applied a CC BY public copyright licence to any Author Accepted Manuscript version arising from this submission.","month":"02","title":"Cell surface fluctuations regulate early embryonic lineage sorting","year":"2022","intvolume":" 185","article_type":"original","type":"journal_article","day":"22","publication":"Cell","issue":"5","ddc":["570"],"ec_funded":1,"article_processing_charge":"No","doi":"10.1016/j.cell.2022.01.022","_id":"10825","page":"777-793.e20","date_updated":"2025-07-10T11:50:00Z","scopus_import":"1","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"status":"public","department":[{"_id":"EdHa"}],"fulldoi":"https://doi.org/10.1016/j.cell.2022.01.022","external_id":{"isi":["000796293700007"],"pmid":["35196500"]},"volume":185,"language":[{"iso":"eng"}],"oa_version":"Published Version","date_created":"2022-03-06T23:01:52Z","isi":1,"has_accepted_license":"1"},{"status":"public","acknowledged_ssus":[{"_id":"Bio"},{"_id":"LifeSc"},{"_id":"ScienComp"}],"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"department":[{"_id":"MaDe"}],"article_number":"e68040","doi":"10.7554/eLife.68040","_id":"10826","article_processing_charge":"No","scopus_import":"1","date_updated":"2026-04-02T12:45:39Z","language":[{"iso":"eng"}],"oa_version":"Published Version","isi":1,"has_accepted_license":"1","date_created":"2022-03-06T23:01:52Z","volume":11,"fulldoi":"https://doi.org/10.7554/eLife.68040","external_id":{"isi":["000763432300001"],"pmid":["35201977"]},"publisher":"eLife Sciences Publications","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","corr_author":"1","pmid":1,"abstract":[{"lang":"eng","text":"Animals that lose one sensory modality often show augmented responses to other sensory inputs. The mechanisms underpinning this cross-modal plasticity are poorly understood. We probe such mechanisms by performing a forward genetic screen for mutants with enhanced O2 perception in Caenorhabditis elegans. Multiple mutants exhibiting increased O2 responsiveness concomitantly show defects in other sensory responses. One mutant, qui-1, defective in a conserved NACHT/WD40 protein, abolishes pheromone-evoked Ca2+ responses in the ADL pheromone-sensing neurons. At the same time, ADL responsiveness to pre-synaptic input from O2-sensing neurons is heightened in qui-1, and other sensory defective mutants, resulting in enhanced neurosecretion although not increased Ca2+ responses. Expressing qui-1 selectively in ADL rescues both the qui-1 ADL neurosecretory phenotype and enhanced escape from 21% O2. Profiling ADL neurons in qui-1 mutants highlights extensive changes in gene expression, notably of many neuropeptide receptors. We show that elevated ADL expression of the conserved neuropeptide receptor NPR-22 is necessary for enhanced ADL neurosecretion in qui-1 mutants, and is sufficient to confer increased ADL neurosecretion in control animals. Sensory loss can thus confer cross-modal plasticity by changing the peptidergic connectome."}],"author":[{"last_name":"Valperga","full_name":"Valperga, Giulio","orcid":"0000-0001-6726-3890","id":"67F289DE-0D8F-11EA-9BDD-54AE3DDC885E","first_name":"Giulio"},{"full_name":"De Bono, Mario","last_name":"De Bono","orcid":"0000-0001-8347-0443","id":"4E3FF80E-F248-11E8-B48F-1D18A9856A87","first_name":"Mario"}],"file_date_updated":"2022-03-07T07:39:25Z","citation":{"ieee":"G. Valperga and M. de Bono, “Impairing one sensory modality enhances another by reconfiguring peptidergic signalling in Caenorhabditis elegans,” eLife, vol. 11. eLife Sciences Publications, 2022.","chicago":"Valperga, Giulio, and Mario de Bono. “Impairing One Sensory Modality Enhances Another by Reconfiguring Peptidergic Signalling in Caenorhabditis Elegans.” ELife. eLife Sciences Publications, 2022. https://doi.org/10.7554/eLife.68040.","mla":"Valperga, Giulio, and Mario de Bono. “Impairing One Sensory Modality Enhances Another by Reconfiguring Peptidergic Signalling in Caenorhabditis Elegans.” ELife, vol. 11, e68040, eLife Sciences Publications, 2022, doi:10.7554/eLife.68040.","apa":"Valperga, G., & de Bono, M. (2022). Impairing one sensory modality enhances another by reconfiguring peptidergic signalling in Caenorhabditis elegans. ELife. eLife Sciences Publications. https://doi.org/10.7554/eLife.68040","ista":"Valperga G, de Bono M. 2022. Impairing one sensory modality enhances another by reconfiguring peptidergic signalling in Caenorhabditis elegans. eLife. 11, e68040.","ama":"Valperga G, de Bono M. Impairing one sensory modality enhances another by reconfiguring peptidergic signalling in Caenorhabditis elegans. eLife. 2022;11. doi:10.7554/eLife.68040","short":"G. Valperga, M. de Bono, ELife 11 (2022)."},"publication_identifier":{"eissn":["2050-084X"]},"project":[{"name":"Molecular mechanisms of neural circuit function","_id":"23870BE8-32DE-11EA-91FC-C7463DDC885E","grant_number":"209504/A/17/Z"}],"oa":1,"quality_controlled":"1","publication_status":"published","article_type":"original","intvolume":" 11","type":"journal_article","ddc":["570"],"day":"24","publication":"eLife","month":"02","title":"Impairing one sensory modality enhances another by reconfiguring peptidergic signalling in Caenorhabditis elegans","file":[{"access_level":"open_access","creator":"dernst","date_created":"2022-03-07T07:39:25Z","success":1,"relation":"main_file","date_updated":"2022-03-07T07:39:25Z","file_id":"10830","file_name":"2022_eLife_Valperga.pdf","checksum":"cc1b9bf866d0f61f965556e0dd03d3ac","content_type":"application/pdf","file_size":4095591}],"acknowledgement":"We would like to thank Gemma Chandratillake and Merav Cohen for identifying mutants and José David Moñino Sánchez for his help on neurosecretion assays. We are grateful to Kaveh Ashrafi (UCSF), Piali Sengupta (Brandeis), and the Caenorhabditis Genetic Center (funded by National Institutes of Health Infrastructure Program P40 OD010440) for strains and reagents ... and Rebecca Butcher (Univ. Florida) for C9 pheromone. We thank Tim Stevens, Paula Freire-Pritchett, Alastair Crisp, GurpreetGhattaoraya, and Fabian Amman for help with bioinformatic analysis, Ekaterina Lashmanova for help with injections, Iris Hardege for strains, and Isabel Beets (KU Leuven) and members of the de Bono Lab for comments on the manuscript. We thank the CRUK Cambridge Research Institute Genomics Core for next generation sequencing and the Flow Cytometry Facility at LMB for FACS. This research was supported by the Scientific Service Units (SSU) of IST Austria through resources provided by the Bioimaging Facility (BIF), the Life Science Facility (LSF) and Scientific Computing (SciCo-p– Bioinformatics).\r\nThis work was supported by the Medical Research Council UK (Studentship to GV), an\r\nAdvanced ERC grant (269,058 ACMO to MdB), and a Wellcome Investigator Award (209504/Z/17/Z to MdB).","date_published":"2022-02-24T00:00:00Z","year":"2022"},{"month":"01","title":"The impact of changes in resolution on the persistent homology of images","date_published":"2022-01-13T00:00:00Z","year":"2022","type":"conference","publication":"2021 IEEE International Conference on Big Data","day":"13","publication_identifier":{"isbn":["9781665439022"]},"arxiv":1,"oa":1,"quality_controlled":"1","publication_status":"published","publisher":"IEEE","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","abstract":[{"text":"Digital images enable quantitative analysis of material properties at micro and macro length scales, but choosing an appropriate resolution when acquiring the image is challenging. A high resolution means longer image acquisition and larger data requirements for a given sample, but if the resolution is too low, significant information may be lost. This paper studies the impact of changes in resolution on persistent homology, a tool from topological data analysis that provides a signature of structure in an image across all length scales. Given prior information about a function, the geometry of an object, or its density distribution at a given resolution, we provide methods to select the coarsest resolution yielding results within an acceptable tolerance. We present numerical case studies for an illustrative synthetic example and samples from porous materials where the theoretical bounds are unknown.","lang":"eng"}],"related_material":{"record":[{"status":"public","id":"18667","relation":"dissertation_contains"}]},"citation":{"short":"T. Heiss, S. Tymochko, B. Story, A. Garin, H. Bui, B. Bleile, V. Robins, in:, 2021 IEEE International Conference on Big Data, IEEE, 2022, pp. 3824–3834.","ama":"Heiss T, Tymochko S, Story B, et al. The impact of changes in resolution on the persistent homology of images. In: 2021 IEEE International Conference on Big Data. IEEE; 2022:3824-3834. doi:10.1109/BigData52589.2021.9671483","ista":"Heiss T, Tymochko S, Story B, Garin A, Bui H, Bleile B, Robins V. 2022. The impact of changes in resolution on the persistent homology of images. 2021 IEEE International Conference on Big Data. Big Data: International Conference on Big Data, 3824–3834.","apa":"Heiss, T., Tymochko, S., Story, B., Garin, A., Bui, H., Bleile, B., & Robins, V. (2022). The impact of changes in resolution on the persistent homology of images. In 2021 IEEE International Conference on Big Data (pp. 3824–3834). Orlando, FL, United States; Virtuell: IEEE. https://doi.org/10.1109/BigData52589.2021.9671483","ieee":"T. Heiss et al., “The impact of changes in resolution on the persistent homology of images,” in 2021 IEEE International Conference on Big Data, Orlando, FL, United States; Virtuell, 2022, pp. 3824–3834.","chicago":"Heiss, Teresa, Sarah Tymochko, Brittany Story, Adélie Garin, Hoa Bui, Bea Bleile, and Vanessa Robins. “The Impact of Changes in Resolution on the Persistent Homology of Images.” In 2021 IEEE International Conference on Big Data, 3824–34. IEEE, 2022. https://doi.org/10.1109/BigData52589.2021.9671483.","mla":"Heiss, Teresa, et al. “The Impact of Changes in Resolution on the Persistent Homology of Images.” 2021 IEEE International Conference on Big Data, IEEE, 2022, pp. 3824–34, doi:10.1109/BigData52589.2021.9671483."},"author":[{"last_name":"Heiss","full_name":"Heiss, Teresa","id":"4879BB4E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-1780-2689","first_name":"Teresa"},{"full_name":"Tymochko, Sarah","last_name":"Tymochko","first_name":"Sarah"},{"full_name":"Story, Brittany","last_name":"Story","first_name":"Brittany"},{"full_name":"Garin, Adélie","last_name":"Garin","first_name":"Adélie"},{"full_name":"Bui, Hoa","last_name":"Bui","first_name":"Hoa"},{"first_name":"Bea","last_name":"Bleile","full_name":"Bleile, Bea"},{"full_name":"Robins, Vanessa","last_name":"Robins","first_name":"Vanessa"}],"external_id":{"isi":["000800559503126"],"arxiv":["2111.05663"]},"fulldoi":"https://doi.org/10.1109/BigData52589.2021.9671483","oa_version":"Preprint","language":[{"iso":"eng"}],"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/2111.05663"}],"isi":1,"date_created":"2022-03-06T23:01:53Z","doi":"10.1109/BigData52589.2021.9671483","_id":"10828","article_processing_charge":"No","conference":{"start_date":"2021-12-15","end_date":"2021-12-18","location":"Orlando, FL, United States; Virtuell","name":"Big Data: International Conference on Big Data"},"scopus_import":"1","date_updated":"2026-04-07T12:54:09Z","page":"3824-3834","status":"public","department":[{"_id":"HeEd"}]},{"day":"08","publication":"ACS Sensors","license":"https://creativecommons.org/licenses/by-nc-nd/4.0/","ddc":["540"],"issue":"2","intvolume":" 7","article_type":"original","type":"journal_article","year":"2022","date_published":"2022-02-08T00:00:00Z","acknowledgement":"This project has received funding from the European Union’s Horizon 2020 Research and Innovation Programme under the Marie Skłodowska-Curie grant agreement No. 813863-\r\nBORGES. Additionally, we gratefully acknowledge the financial support from the Austrian Research Promotion Agency (FFG; 870025 and 873541) for this research. The data that support the findings of this study are openly available in Zenodo (DOI: 10.5281/zenodo.5500360)","file":[{"date_created":"2022-03-07T08:15:01Z","access_level":"open_access","creator":"dernst","relation":"main_file","success":1,"file_name":"2022_ACSSensors_Hasler.pdf","checksum":"d704af7262cd484da9bb84b7d84e2b09","file_id":"10832","date_updated":"2022-03-07T08:15:01Z","file_size":2969415,"content_type":"application/pdf"}],"month":"02","title":"Field-effect transistor with a plasmonic fiber optic gate electrode as a multivariable biosensor device","author":[{"first_name":"Roger","last_name":"Hasler","full_name":"Hasler, Roger"},{"last_name":"Reiner-Rozman","full_name":"Reiner-Rozman, Ciril","first_name":"Ciril"},{"full_name":"Fossati, Stefan","last_name":"Fossati","first_name":"Stefan"},{"full_name":"Aspermair, Patrik","last_name":"Aspermair","first_name":"Patrik"},{"full_name":"Dostalek, Jakub","last_name":"Dostalek","first_name":"Jakub"},{"first_name":"Seungho","orcid":"0000-0002-6962-8598","id":"BB243B88-D767-11E9-B658-BC13E6697425","last_name":"Lee","full_name":"Lee, Seungho"},{"first_name":"Maria","orcid":"0000-0001-5013-2843","id":"43C61214-F248-11E8-B48F-1D18A9856A87","full_name":"Ibáñez, Maria","last_name":"Ibáñez"},{"last_name":"Bintinger","full_name":"Bintinger, Johannes","first_name":"Johannes"},{"full_name":"Knoll, Wolfgang","last_name":"Knoll","first_name":"Wolfgang"}],"related_material":{"record":[{"id":"10833","status":"public","relation":"research_data"}]},"citation":{"ista":"Hasler R, Reiner-Rozman C, Fossati S, Aspermair P, Dostalek J, Lee S, Ibáñez M, Bintinger J, Knoll W. 2022. Field-effect transistor with a plasmonic fiber optic gate electrode as a multivariable biosensor device. ACS Sensors. 7(2), 504–512.","short":"R. Hasler, C. Reiner-Rozman, S. Fossati, P. Aspermair, J. Dostalek, S. Lee, M. Ibáñez, J. Bintinger, W. Knoll, ACS Sensors 7 (2022) 504–512.","ama":"Hasler R, Reiner-Rozman C, Fossati S, et al. Field-effect transistor with a plasmonic fiber optic gate electrode as a multivariable biosensor device. ACS Sensors. 2022;7(2):504-512. doi:10.1021/acssensors.1c02313","chicago":"Hasler, Roger, Ciril Reiner-Rozman, Stefan Fossati, Patrik Aspermair, Jakub Dostalek, Seungho Lee, Maria Ibáñez, Johannes Bintinger, and Wolfgang Knoll. “Field-Effect Transistor with a Plasmonic Fiber Optic Gate Electrode as a Multivariable Biosensor Device.” ACS Sensors. American Chemical Society, 2022. https://doi.org/10.1021/acssensors.1c02313.","ieee":"R. Hasler et al., “Field-effect transistor with a plasmonic fiber optic gate electrode as a multivariable biosensor device,” ACS Sensors, vol. 7, no. 2. American Chemical Society, pp. 504–512, 2022.","mla":"Hasler, Roger, et al. “Field-Effect Transistor with a Plasmonic Fiber Optic Gate Electrode as a Multivariable Biosensor Device.” ACS Sensors, vol. 7, no. 2, American Chemical Society, 2022, pp. 504–12, doi:10.1021/acssensors.1c02313.","apa":"Hasler, R., Reiner-Rozman, C., Fossati, S., Aspermair, P., Dostalek, J., Lee, S., … Knoll, W. (2022). Field-effect transistor with a plasmonic fiber optic gate electrode as a multivariable biosensor device. ACS Sensors. American Chemical Society. https://doi.org/10.1021/acssensors.1c02313"},"file_date_updated":"2022-03-07T08:15:01Z","pmid":1,"abstract":[{"lang":"eng","text":"A novel multivariable system, combining a transistor with fiber optic-based surface plasmon resonance spectroscopy with the gate electrode simultaneously acting as the fiber optic sensor surface, is reported. The dual-mode sensor allows for discrimination of mass and charge contributions for binding assays on the same sensor surface. Furthermore, we optimize the sensor geometry by investigating the influence of the fiber area to transistor channel area ratio and distance. We show that larger fiber optic tip diameters are favorable for electronic and optical signals and demonstrate the reversibility of plasmon resonance wavelength shifts after electric field application. As a proof of principle, a layer-by-layer assembly of polyelectrolytes is performed to benchmark the system against multivariable sensing platforms with planar surface plasmon resonance configurations. Furthermore, the biosensing performance is assessed using a thrombin binding assay with surface-immobilized aptamers as receptors, allowing for the detection of medically relevant thrombin concentrations."}],"user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","publisher":"American Chemical Society","publication_status":"published","quality_controlled":"1","oa":1,"publication_identifier":{"eissn":["2379-3694"]},"date_created":"2022-03-06T23:01:54Z","isi":1,"has_accepted_license":"1","language":[{"iso":"eng"}],"oa_version":"Published Version","fulldoi":"https://doi.org/10.1021/acssensors.1c02313","external_id":{"pmid":["35134289"],"isi":["000765113000016"]},"volume":7,"department":[{"_id":"MaIb"}],"tmp":{"image":"/images/cc_by_nc_nd.png","short":"CC BY-NC-ND (4.0)","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode"},"status":"public","page":"504-512","date_updated":"2026-04-02T12:33:46Z","scopus_import":"1","article_processing_charge":"No","doi":"10.1021/acssensors.1c02313","_id":"10829"},{"year":"2022","fulldoi":"https://doi.org/10.5281/ZENODO.5500360","month":"02","title":"Field-effect transistor with a plasmonic fiber optic gate electrode as a multivariable biosensor device","date_published":"2022-02-08T00:00:00Z","ddc":["540"],"day":"08","date_created":"2022-03-07T08:19:11Z","oa_version":"Published Version","main_file_link":[{"url":"https://doi.org/10.5281/zenodo.5500360","open_access":"1"}],"type":"research_data_reference","date_updated":"2026-04-02T12:33:44Z","doi":"10.5281/ZENODO.5500360","_id":"10833","oa":1,"article_processing_charge":"No","abstract":[{"lang":"eng","text":"Detailed information about the data set see \"dataset description.txt\" file."}],"author":[{"full_name":"Hasler, Roger","last_name":"Hasler","first_name":"Roger"},{"last_name":"Reiner-Rozman","full_name":"Reiner-Rozman, Ciril","first_name":"Ciril"},{"first_name":"Stefan","last_name":"Fossati","full_name":"Fossati, Stefan"},{"full_name":"Aspermair, Patrik","last_name":"Aspermair","first_name":"Patrik"},{"last_name":"Dostalek","full_name":"Dostalek, Jakub","first_name":"Jakub"},{"full_name":"Lee, Seungho","last_name":"Lee","orcid":"0000-0002-6962-8598","first_name":"Seungho","id":"BB243B88-D767-11E9-B658-BC13E6697425"},{"full_name":"Ibáñez, Maria","last_name":"Ibáñez","orcid":"0000-0001-5013-2843","first_name":"Maria","id":"43C61214-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Johannes","last_name":"Bintinger","full_name":"Bintinger, Johannes"},{"first_name":"Wolfgang","last_name":"Knoll","full_name":"Knoll, Wolfgang"}],"department":[{"_id":"MaIb"}],"citation":{"ama":"Hasler R, Reiner-Rozman C, Fossati S, et al. Field-effect transistor with a plasmonic fiber optic gate electrode as a multivariable biosensor device. 2022. doi:10.5281/ZENODO.5500360","short":"R. Hasler, C. Reiner-Rozman, S. Fossati, P. Aspermair, J. Dostalek, S. Lee, M. Ibáñez, J. Bintinger, W. Knoll, (2022).","ista":"Hasler R, Reiner-Rozman C, Fossati S, Aspermair P, Dostalek J, Lee S, Ibáñez M, Bintinger J, Knoll W. 2022. Field-effect transistor with a plasmonic fiber optic gate electrode as a multivariable biosensor device, Zenodo, 10.5281/ZENODO.5500360.","apa":"Hasler, R., Reiner-Rozman, C., Fossati, S., Aspermair, P., Dostalek, J., Lee, S., … Knoll, W. (2022). Field-effect transistor with a plasmonic fiber optic gate electrode as a multivariable biosensor device. Zenodo. https://doi.org/10.5281/ZENODO.5500360","ieee":"R. Hasler et al., “Field-effect transistor with a plasmonic fiber optic gate electrode as a multivariable biosensor device.” Zenodo, 2022.","chicago":"Hasler, Roger, Ciril Reiner-Rozman, Stefan Fossati, Patrik Aspermair, Jakub Dostalek, Seungho Lee, Maria Ibáñez, Johannes Bintinger, and Wolfgang Knoll. “Field-Effect Transistor with a Plasmonic Fiber Optic Gate Electrode as a Multivariable Biosensor Device.” Zenodo, 2022. https://doi.org/10.5281/ZENODO.5500360.","mla":"Hasler, Roger, et al. Field-Effect Transistor with a Plasmonic Fiber Optic Gate Electrode as a Multivariable Biosensor Device. Zenodo, 2022, doi:10.5281/ZENODO.5500360."},"related_material":{"record":[{"status":"public","id":"10829","relation":"used_in_publication"}]},"status":"public","publisher":"Zenodo","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf"}]