[{"date_updated":"2024-10-14T13:16:54Z","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"department":[{"_id":"NanoFab"}],"title":"Quantifying the probing and selection of microenvironmental pores by motile immune cells","_id":"11182","pmid":1,"OA_place":"publisher","publication_identifier":{"eissn":["2691-1299"]},"publication_status":"published","publisher":"Wiley","type":"journal_article","oa_version":"Published Version","month":"04","article_type":"original","OA_type":"hybrid","article_processing_charge":"No","article_number":"e407","has_accepted_license":"1","ddc":["570"],"abstract":[{"lang":"eng","text":"Immune cells are constantly on the move through multicellular organisms to explore and respond to pathogens and other harmful insults. While moving, immune cells efficiently traverse microenvironments composed of tissue cells and extracellular fibers, which together form complex environments of various porosity, stiffness, topography, and chemical composition. In this protocol we describe experimental procedures to investigate immune cell migration through microenvironments of heterogeneous porosity. In particular, we describe micro-channels, micro-pillars, and collagen networks as cell migration paths with alternative pore size choices. Employing micro-channels or micro-pillars that divide at junctions into alternative paths with initially differentially sized pores allows us to precisely (1) measure the cellular translocation time through these porous path junctions, (2) quantify the cellular preference for individual pore sizes, and (3) image cellular components like the nucleus and the cytoskeleton. This reductionistic experimental setup thus can elucidate how immune cells perform decisions in complex microenvironments of various porosity like the interstitium. The setup further allows investigation of the underlying forces of cellular squeezing and the consequences of cellular deformation on the integrity of the cell and its organelles. As a complementary approach that does not require any micro-engineering expertise, we describe the usage of three-dimensional collagen networks with different pore sizes. Whereas we here focus on dendritic cells as a model for motile immune cells, the described protocols are versatile as they are also applicable for other immune cell types like neutrophils and non-immune cell types such as mesenchymal and cancer cells. In summary, we here describe protocols to identify the mechanisms and principles of cellular probing, decision making, and squeezing during cellular movement through microenvironments of heterogeneous porosity."}],"file_date_updated":"2022-05-02T08:16:10Z","oa":1,"intvolume":"         2","doi":"10.1002/cpz1.407","scopus_import":"1","date_created":"2022-04-17T22:01:46Z","quality_controlled":"1","citation":{"apa":"Kroll, J., Ruiz-Fernandez, M. J. A., Braun, M. B., Merrin, J., &#38; Renkawitz, J. (2022). Quantifying the probing and selection of microenvironmental pores by motile immune cells. <i>Current Protocols</i>. Wiley. <a href=\"https://doi.org/10.1002/cpz1.407\">https://doi.org/10.1002/cpz1.407</a>","chicago":"Kroll, Janina, Mauricio J.A. Ruiz-Fernandez, Malte B. Braun, Jack Merrin, and Jörg Renkawitz. “Quantifying the Probing and Selection of Microenvironmental Pores by Motile Immune Cells.” <i>Current Protocols</i>. Wiley, 2022. <a href=\"https://doi.org/10.1002/cpz1.407\">https://doi.org/10.1002/cpz1.407</a>.","mla":"Kroll, Janina, et al. “Quantifying the Probing and Selection of Microenvironmental Pores by Motile Immune Cells.” <i>Current Protocols</i>, vol. 2, no. 4, e407, Wiley, 2022, doi:<a href=\"https://doi.org/10.1002/cpz1.407\">10.1002/cpz1.407</a>.","ista":"Kroll J, Ruiz-Fernandez MJA, Braun MB, Merrin J, Renkawitz J. 2022. Quantifying the probing and selection of microenvironmental pores by motile immune cells. Current Protocols. 2(4), e407.","ieee":"J. Kroll, M. J. A. Ruiz-Fernandez, M. B. Braun, J. Merrin, and J. Renkawitz, “Quantifying the probing and selection of microenvironmental pores by motile immune cells,” <i>Current Protocols</i>, vol. 2, no. 4. Wiley, 2022.","short":"J. Kroll, M.J.A. Ruiz-Fernandez, M.B. Braun, J. Merrin, J. Renkawitz, Current Protocols 2 (2022).","ama":"Kroll J, Ruiz-Fernandez MJA, Braun MB, Merrin J, Renkawitz J. Quantifying the probing and selection of microenvironmental pores by motile immune cells. <i>Current Protocols</i>. 2022;2(4). doi:<a href=\"https://doi.org/10.1002/cpz1.407\">10.1002/cpz1.407</a>"},"day":"05","year":"2022","publication":"Current Protocols","language":[{"iso":"eng"}],"issue":"4","user_id":"0043cee0-e5fc-11ee-9736-f83bc23afbf0","date_published":"2022-04-05T00:00:00Z","file":[{"file_name":"2022_CurrentProtocols_Kroll.pdf","success":1,"file_size":2142703,"checksum":"72152d005c367777f6cf2f6a477f0d52","access_level":"open_access","content_type":"application/pdf","date_created":"2022-05-02T08:16:10Z","date_updated":"2022-05-02T08:16:10Z","creator":"dernst","file_id":"11347","relation":"main_file"}],"author":[{"first_name":"Janina","full_name":"Kroll, Janina","last_name":"Kroll"},{"first_name":"Mauricio J.A.","last_name":"Ruiz-Fernandez","full_name":"Ruiz-Fernandez, Mauricio J.A."},{"first_name":"Malte B.","last_name":"Braun","full_name":"Braun, Malte B."},{"first_name":"Jack","full_name":"Merrin, Jack","orcid":"0000-0001-5145-4609","id":"4515C308-F248-11E8-B48F-1D18A9856A87","last_name":"Merrin"},{"first_name":"Jörg","orcid":"0000-0003-2856-3369","full_name":"Renkawitz, Jörg","last_name":"Renkawitz","id":"3F0587C8-F248-11E8-B48F-1D18A9856A87"}],"external_id":{"pmid":["35384410"]},"volume":2,"status":"public","acknowledgement":"We thank Kasia Stefanowski for excellent technical assistance, and the Core Facility Bioimaging of the Biomedical Center (BMC) of the Ludwig-Maximilian University for excellent support. We gratefully acknowledge financial support from the Peter Hans Hofschneider Professorship of the Stiftung Experimentelle Biomedizin (to J.R), from the DFG (Collaborative Research Center SFB914, project A12; and Priority Programme SPP2332, project 492014049; both to J.R) and from the LMU Institutional Strategy LMU-Excellent within the framework of the German Excellence Initiative (to J.R).\r\nOpen access funding enabled and organized by Projekt DEAL."},{"month":"02","project":[{"name":"Elastic Coordination for Scalable Machine Learning","call_identifier":"H2020","grant_number":"805223","_id":"268A44D6-B435-11E9-9278-68D0E5697425"}],"type":"conference","publisher":"Schloss Dagstuhl - Leibniz-Zentrum für Informatik","publication_status":"published","oa_version":"Published Version","publication_identifier":{"issn":["1868-8969"],"isbn":["9783959772198"]},"ec_funded":1,"_id":"11183","title":"Beyond distributed subgraph detection: Induced subgraphs, multicolored problems and graph parameters","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"department":[{"_id":"DaAl"}],"date_updated":"2025-04-14T07:49:13Z","acknowledgement":"Amir Nikabadi: Supported by the LABEX MILYON (ANR-10-LABX-0070) of Université de Lyon, within the program “Investissements d’Avenir” (ANR-11-IDEX-0007) operated by the French National Research Agency (ANR). Janne H. Korhonen: Supported by the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (grant agreement No 805223 ScaleML).\r\nWe thank François Le Gall and Masayuki Miyamoto for sharing their work on lower bounds for induced subgraph detection [36].","status":"public","date_published":"2022-02-01T00:00:00Z","file":[{"date_updated":"2022-05-02T07:53:00Z","creator":"dernst","file_id":"11345","relation":"main_file","success":1,"file_name":"2022_LIPICs_Nikabadi.pdf","file_size":790396,"checksum":"626551c14de5d4091573200ed0535752","content_type":"application/pdf","access_level":"open_access","date_created":"2022-05-02T07:53:00Z"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","author":[{"first_name":"Amir","full_name":"Nikabadi, Amir","last_name":"Nikabadi"},{"first_name":"Janne","last_name":"Korhonen","id":"C5402D42-15BC-11E9-A202-CA2BE6697425","full_name":"Korhonen, Janne"}],"volume":217,"publication":"25th International Conference on Principles of Distributed Systems","language":[{"iso":"eng"}],"year":"2022","scopus_import":"1","quality_controlled":"1","citation":{"chicago":"Nikabadi, Amir, and Janne Korhonen. “Beyond Distributed Subgraph Detection: Induced Subgraphs, Multicolored Problems and Graph Parameters.” In <i>25th International Conference on Principles of Distributed Systems</i>, edited by Quentin Bramas, Vincent Gramoli, and Alessia Milani, Vol. 217. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2022. <a href=\"https://doi.org/10.4230/LIPIcs.OPODIS.2021.15\">https://doi.org/10.4230/LIPIcs.OPODIS.2021.15</a>.","apa":"Nikabadi, A., &#38; Korhonen, J. (2022). Beyond distributed subgraph detection: Induced subgraphs, multicolored problems and graph parameters. In Q. Bramas, V. Gramoli, &#38; A. Milani (Eds.), <i>25th International Conference on Principles of Distributed Systems</i> (Vol. 217). Strasbourg, France: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. <a href=\"https://doi.org/10.4230/LIPIcs.OPODIS.2021.15\">https://doi.org/10.4230/LIPIcs.OPODIS.2021.15</a>","mla":"Nikabadi, Amir, and Janne Korhonen. “Beyond Distributed Subgraph Detection: Induced Subgraphs, Multicolored Problems and Graph Parameters.” <i>25th International Conference on Principles of Distributed Systems</i>, edited by Quentin Bramas et al., vol. 217, 15, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2022, doi:<a href=\"https://doi.org/10.4230/LIPIcs.OPODIS.2021.15\">10.4230/LIPIcs.OPODIS.2021.15</a>.","ista":"Nikabadi A, Korhonen J. 2022. Beyond distributed subgraph detection: Induced subgraphs, multicolored problems and graph parameters. 25th International Conference on Principles of Distributed Systems. OPODIS, LIPIcs, vol. 217, 15.","ama":"Nikabadi A, Korhonen J. Beyond distributed subgraph detection: Induced subgraphs, multicolored problems and graph parameters. In: Bramas Q, Gramoli V, Milani A, eds. <i>25th International Conference on Principles of Distributed Systems</i>. Vol 217. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2022. doi:<a href=\"https://doi.org/10.4230/LIPIcs.OPODIS.2021.15\">10.4230/LIPIcs.OPODIS.2021.15</a>","ieee":"A. Nikabadi and J. Korhonen, “Beyond distributed subgraph detection: Induced subgraphs, multicolored problems and graph parameters,” in <i>25th International Conference on Principles of Distributed Systems</i>, Strasbourg, France, 2022, vol. 217.","short":"A. Nikabadi, J. Korhonen, in:, Q. Bramas, V. Gramoli, A. Milani (Eds.), 25th International Conference on Principles of Distributed Systems, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2022."},"date_created":"2022-04-17T22:01:47Z","alternative_title":["LIPIcs"],"corr_author":"1","day":"01","intvolume":"       217","doi":"10.4230/LIPIcs.OPODIS.2021.15","ddc":["510"],"abstract":[{"lang":"eng","text":"Subgraph detection has recently been one of the most studied problems in the CONGEST model of distributed computing. In this work, we study the distributed complexity of problems closely related to subgraph detection, mainly focusing on induced subgraph detection. The main line of this work presents lower bounds and parameterized algorithms w.r.t structural parameters of the input graph:\r\n- On general graphs, we give unconditional lower bounds for induced detection of cycles and patterns of treewidth 2 in CONGEST. Moreover, by adapting reductions from centralized parameterized complexity, we prove lower bounds in CONGEST for detecting patterns with a 4-clique, and for induced path detection conditional on the hardness of triangle detection in the congested clique.\r\n- On graphs of bounded degeneracy, we show that induced paths can be detected fast in CONGEST using techniques from parameterized algorithms, while detecting cycles and patterns of treewidth 2 is hard.\r\n- On graphs of bounded vertex cover number, we show that induced subgraph detection is easy in CONGEST for any pattern graph. More specifically, we adapt a centralized parameterized algorithm for a more general maximum common induced subgraph detection problem to the distributed setting. In addition to these induced subgraph detection results, we study various related problems in the CONGEST and congested clique models, including for multicolored versions of subgraph-detection-like problems."}],"file_date_updated":"2022-05-02T07:53:00Z","oa":1,"editor":[{"full_name":"Bramas, Quentin","last_name":"Bramas","first_name":"Quentin"},{"first_name":"Vincent","last_name":"Gramoli","full_name":"Gramoli, Vincent"},{"first_name":"Alessia","last_name":"Milani","full_name":"Milani, Alessia"}],"article_processing_charge":"No","article_number":"15","conference":{"end_date":"2021-12-15","name":"OPODIS","location":"Strasbourg, France","start_date":"2021-12-13"},"has_accepted_license":"1"},{"arxiv":1,"type":"conference","publisher":"Schloss Dagstuhl - Leibniz-Zentrum für Informatik","publication_status":"published","oa_version":"Published Version","month":"02","project":[{"_id":"268A44D6-B435-11E9-9278-68D0E5697425","name":"Elastic Coordination for Scalable Machine Learning","call_identifier":"H2020","grant_number":"805223"},{"call_identifier":"H2020","grant_number":"840605","name":"Coordination in constrained and natural distributed systems","_id":"26A5D39A-B435-11E9-9278-68D0E5697425"}],"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"title":"Fast graphical population protocols","department":[{"_id":"DaAl"}],"date_updated":"2025-04-14T07:49:13Z","publication_identifier":{"isbn":["9783959772198"],"issn":["1868-8969"]},"_id":"11184","ec_funded":1,"language":[{"iso":"eng"}],"publication":"25th International Conference on Principles of Distributed Systems","year":"2022","acknowledgement":"Dan Alistarh: This project has received funding from the European Research Council (ERC)\r\nunder the European Union’s Horizon 2020 research and innovation programme (grant agreement No.805223 ScaleML).\r\nJoel Rybicki: This project has received from the European Union’s Horizon 2020 research and\r\ninnovation programme under the Marie Skłodowska-Curie grant agreement No. 840605.\r\nAcknowledgements We grateful to Giorgi Nadiradze for pointing out a generalisation of the phase clock construction to non-regular graphs. We also thank anonymous reviewers for their useful comments on earlier versions of this manuscript.","status":"public","date_published":"2022-02-01T00:00:00Z","file":[{"date_updated":"2022-05-02T08:06:33Z","creator":"dernst","file_id":"11346","relation":"main_file","file_name":"2022_LIPICs_Alistarh.pdf","success":1,"file_size":959406,"checksum":"2c7c982174c6f98c4ca6e92539d15086","access_level":"open_access","content_type":"application/pdf","date_created":"2022-05-02T08:06:33Z"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","volume":217,"author":[{"first_name":"Dan-Adrian","last_name":"Alistarh","id":"4A899BFC-F248-11E8-B48F-1D18A9856A87","full_name":"Alistarh, Dan-Adrian","orcid":"0000-0003-3650-940X"},{"full_name":"Gelashvili, Rati","last_name":"Gelashvili","first_name":"Rati"},{"last_name":"Rybicki","id":"334EFD2E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6432-6646","full_name":"Rybicki, Joel","first_name":"Joel"}],"external_id":{"arxiv":["2102.08808"]},"ddc":["510"],"abstract":[{"text":"Let G be a graph on n nodes. In the stochastic population protocol model, a collection of n indistinguishable, resource-limited nodes collectively solve tasks via pairwise interactions. In each interaction, two randomly chosen neighbors first read each other’s states, and then update their local states. A rich line of research has established tight upper and lower bounds on the complexity of fundamental tasks, such as majority and leader election, in this model, when G is a clique. Specifically, in the clique, these tasks can be solved fast, i.e., in n polylog n pairwise interactions, with high probability, using at most polylog n states per node.\r\nIn this work, we consider the more general setting where G is an arbitrary regular graph, and present a technique for simulating protocols designed for fully-connected networks in any connected regular graph. Our main result is a simulation that is efficient on many interesting graph families: roughly, the simulation overhead is polylogarithmic in the number of nodes, and quadratic in the conductance of the graph. As a sample application, we show that, in any regular graph with conductance φ, both leader election and exact majority can be solved in φ^{-2} ⋅ n polylog n pairwise interactions, with high probability, using at most φ^{-2} ⋅ polylog n states per node. This shows that there are fast and space-efficient population protocols for leader election and exact majority on graphs with good expansion properties. We believe our results will prove generally useful, as they allow efficient technology transfer between the well-mixed (clique) case, and the under-explored spatial setting.","lang":"eng"}],"oa":1,"editor":[{"first_name":"Quentin","full_name":"Bramas, Quentin","last_name":"Bramas"},{"last_name":"Gramoli","full_name":"Gramoli, Vincent","first_name":"Vincent"},{"last_name":"Milani","full_name":"Milani, Alessia","first_name":"Alessia"}],"file_date_updated":"2022-05-02T08:06:33Z","conference":{"end_date":"2021-12-15","location":"Strasbourg, France","name":"OPODIS","start_date":"2021-12-13"},"article_number":"14","article_processing_charge":"No","has_accepted_license":"1","date_created":"2022-04-17T22:01:47Z","citation":{"short":"D.-A. Alistarh, R. Gelashvili, J. Rybicki, in:, Q. Bramas, V. Gramoli, A. Milani (Eds.), 25th International Conference on Principles of Distributed Systems, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2022.","ieee":"D.-A. Alistarh, R. Gelashvili, and J. Rybicki, “Fast graphical population protocols,” in <i>25th International Conference on Principles of Distributed Systems</i>, Strasbourg, France, 2022, vol. 217.","ama":"Alistarh D-A, Gelashvili R, Rybicki J. Fast graphical population protocols. In: Bramas Q, Gramoli V, Milani A, eds. <i>25th International Conference on Principles of Distributed Systems</i>. Vol 217. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2022. doi:<a href=\"https://doi.org/10.4230/LIPIcs.OPODIS.2021.14\">10.4230/LIPIcs.OPODIS.2021.14</a>","ista":"Alistarh D-A, Gelashvili R, Rybicki J. 2022. Fast graphical population protocols. 25th International Conference on Principles of Distributed Systems. OPODIS, LIPIcs, vol. 217, 14.","chicago":"Alistarh, Dan-Adrian, Rati Gelashvili, and Joel Rybicki. “Fast Graphical Population Protocols.” In <i>25th International Conference on Principles of Distributed Systems</i>, edited by Quentin Bramas, Vincent Gramoli, and Alessia Milani, Vol. 217. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2022. <a href=\"https://doi.org/10.4230/LIPIcs.OPODIS.2021.14\">https://doi.org/10.4230/LIPIcs.OPODIS.2021.14</a>.","apa":"Alistarh, D.-A., Gelashvili, R., &#38; Rybicki, J. (2022). Fast graphical population protocols. In Q. Bramas, V. Gramoli, &#38; A. Milani (Eds.), <i>25th International Conference on Principles of Distributed Systems</i> (Vol. 217). Strasbourg, France: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. <a href=\"https://doi.org/10.4230/LIPIcs.OPODIS.2021.14\">https://doi.org/10.4230/LIPIcs.OPODIS.2021.14</a>","mla":"Alistarh, Dan-Adrian, et al. “Fast Graphical Population Protocols.” <i>25th International Conference on Principles of Distributed Systems</i>, edited by Quentin Bramas et al., vol. 217, 14, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2022, doi:<a href=\"https://doi.org/10.4230/LIPIcs.OPODIS.2021.14\">10.4230/LIPIcs.OPODIS.2021.14</a>."},"quality_controlled":"1","scopus_import":"1","corr_author":"1","day":"01","alternative_title":["LIPIcs"],"intvolume":"       217","doi":"10.4230/LIPIcs.OPODIS.2021.14"},{"arxiv":1,"publication_status":"published","type":"conference","publisher":"Springer Nature","series_title":"LNCS","oa_version":"Preprint","main_file_link":[{"open_access":"1","url":" https://doi.org/10.48550/arXiv.2109.14892"}],"month":"03","project":[{"_id":"260C2330-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","grant_number":"754411","name":"ISTplus - Postdoctoral Fellowships"}],"department":[{"_id":"UlWa"}],"title":"Approximating the bundled crossing number","date_updated":"2025-09-10T09:35:56Z","isi":1,"publication_identifier":{"issn":["0302-9743"],"eissn":["1611-3349"],"isbn":["9783030967307"]},"ec_funded":1,"_id":"11185","page":"383-395","language":[{"iso":"eng"}],"publication":"WALCOM 2022: Algorithms and Computation","year":"2022","status":"public","acknowledgement":"This work was initiated during the Workshop on Geometric Graphs in November 2019 in Strobl, Austria. We would like to thank Oswin Aichholzer, Fabian Klute, Man-Kwun Chiu, Martin Balko, Pavel Valtr for their avid discussions during the workshop. The first author has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Sklodowska Curie grant agreement No 754411. The second author has been supported by the German Research Foundation DFG Project FE 340/12-1.","date_published":"2022-03-16T00:00:00Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","author":[{"first_name":"Alan M","full_name":"Arroyo Guevara, Alan M","orcid":"0000-0003-2401-8670","id":"3207FDC6-F248-11E8-B48F-1D18A9856A87","last_name":"Arroyo Guevara"},{"first_name":"Stefan","last_name":"Felsner","full_name":"Felsner, Stefan"}],"external_id":{"arxiv":["2109.14892"],"isi":["001435074700031"]},"volume":13174,"abstract":[{"lang":"eng","text":"Bundling crossings is a strategy which can enhance the readability of graph drawings. In this paper we consider bundlings for families of pseudosegments, i.e., simple curves such that any two have share at most one point at which they cross. Our main result is that there is a polynomial-time algorithm to compute an 8-approximation of the bundled crossing number of such instances (up to adding a term depending on the facial structure). This 8-approximation also holds for bundlings of good drawings of graphs. In the special case of circular drawings the approximation factor is 8 (no extra term), this improves upon the 10-approximation of Fink et al. [6]. We also show how to compute a 92-approximation when the intersection graph of the pseudosegments is bipartite."}],"oa":1,"article_processing_charge":"No","conference":{"end_date":"2022-03-26","name":"WALCOM: Algorithms and Computation","location":"Jember, Indonesia","start_date":"2022-03-24"},"scopus_import":"1","date_created":"2022-04-17T22:01:47Z","quality_controlled":"1","citation":{"mla":"Arroyo Guevara, Alan M., and Stefan Felsner. “Approximating the Bundled Crossing Number.” <i>WALCOM 2022: Algorithms and Computation</i>, vol. 13174, Springer Nature, 2022, pp. 383–95, doi:<a href=\"https://doi.org/10.1007/978-3-030-96731-4_31\">10.1007/978-3-030-96731-4_31</a>.","chicago":"Arroyo Guevara, Alan M, and Stefan Felsner. “Approximating the Bundled Crossing Number.” In <i>WALCOM 2022: Algorithms and Computation</i>, 13174:383–95. LNCS. Springer Nature, 2022. <a href=\"https://doi.org/10.1007/978-3-030-96731-4_31\">https://doi.org/10.1007/978-3-030-96731-4_31</a>.","apa":"Arroyo Guevara, A. M., &#38; Felsner, S. (2022). Approximating the bundled crossing number. In <i>WALCOM 2022: Algorithms and Computation</i> (Vol. 13174, pp. 383–395). Jember, Indonesia: Springer Nature. <a href=\"https://doi.org/10.1007/978-3-030-96731-4_31\">https://doi.org/10.1007/978-3-030-96731-4_31</a>","ista":"Arroyo Guevara AM, Felsner S. 2022. Approximating the bundled crossing number. WALCOM 2022: Algorithms and Computation. WALCOM: Algorithms and ComputationLNCS vol. 13174, 383–395.","ama":"Arroyo Guevara AM, Felsner S. Approximating the bundled crossing number. In: <i>WALCOM 2022: Algorithms and Computation</i>. Vol 13174. LNCS. Springer Nature; 2022:383-395. doi:<a href=\"https://doi.org/10.1007/978-3-030-96731-4_31\">10.1007/978-3-030-96731-4_31</a>","ieee":"A. M. Arroyo Guevara and S. Felsner, “Approximating the bundled crossing number,” in <i>WALCOM 2022: Algorithms and Computation</i>, Jember, Indonesia, 2022, vol. 13174, pp. 383–395.","short":"A.M. Arroyo Guevara, S. Felsner, in:, WALCOM 2022: Algorithms and Computation, Springer Nature, 2022, pp. 383–395."},"day":"16","intvolume":"     13174","related_material":{"record":[{"id":"13969","status":"public","relation":"later_version"}]},"doi":"10.1007/978-3-030-96731-4_31"},{"_id":"11186","isi":1,"publication_identifier":{"eissn":["1469-2120"],"issn":["0024-6093"]},"date_updated":"2024-10-09T21:02:21Z","tmp":{"name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)","image":"/images/cc_by_nc.png","legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","short":"CC BY-NC (4.0)"},"department":[{"_id":"MaKw"}],"title":"Large deviations in random latin squares","month":"08","article_type":"original","type":"journal_article","publisher":"Wiley","publication_status":"published","oa_version":"Published Version","arxiv":1,"intvolume":"        54","doi":"10.1112/blms.12638","quality_controlled":"1","citation":{"ama":"Kwan MA, Sah A, Sawhney M. Large deviations in random latin squares. <i>Bulletin of the London Mathematical Society</i>. 2022;54(4):1420-1438. doi:<a href=\"https://doi.org/10.1112/blms.12638\">10.1112/blms.12638</a>","short":"M.A. Kwan, A. Sah, M. Sawhney, Bulletin of the London Mathematical Society 54 (2022) 1420–1438.","ieee":"M. A. Kwan, A. Sah, and M. Sawhney, “Large deviations in random latin squares,” <i>Bulletin of the London Mathematical Society</i>, vol. 54, no. 4. Wiley, pp. 1420–1438, 2022.","ista":"Kwan MA, Sah A, Sawhney M. 2022. Large deviations in random latin squares. Bulletin of the London Mathematical Society. 54(4), 1420–1438.","apa":"Kwan, M. A., Sah, A., &#38; Sawhney, M. (2022). Large deviations in random latin squares. <i>Bulletin of the London Mathematical Society</i>. Wiley. <a href=\"https://doi.org/10.1112/blms.12638\">https://doi.org/10.1112/blms.12638</a>","chicago":"Kwan, Matthew Alan, Ashwin Sah, and Mehtaab Sawhney. “Large Deviations in Random Latin Squares.” <i>Bulletin of the London Mathematical Society</i>. Wiley, 2022. <a href=\"https://doi.org/10.1112/blms.12638\">https://doi.org/10.1112/blms.12638</a>.","mla":"Kwan, Matthew Alan, et al. “Large Deviations in Random Latin Squares.” <i>Bulletin of the London Mathematical Society</i>, vol. 54, no. 4, Wiley, 2022, pp. 1420–38, doi:<a href=\"https://doi.org/10.1112/blms.12638\">10.1112/blms.12638</a>."},"date_created":"2022-04-17T22:01:48Z","scopus_import":"1","corr_author":"1","day":"01","article_processing_charge":"No","has_accepted_license":"1","ddc":["510"],"abstract":[{"text":"In this note, we study large deviations of the number  𝐍  of intercalates ( 2×2  combinatorial subsquares which are themselves Latin squares) in a random  𝑛×𝑛  Latin square. In particular, for constant  𝛿>0  we prove that  exp(−𝑂(𝑛2log𝑛))⩽Pr(𝐍⩽(1−𝛿)𝑛2/4)⩽exp(−Ω(𝑛2))  and  exp(−𝑂(𝑛4/3(log𝑛)))⩽Pr(𝐍⩾(1+𝛿)𝑛2/4)⩽exp(−Ω(𝑛4/3(log𝑛)2/3)) . As a consequence, we deduce that a typical order- 𝑛  Latin square has  (1+𝑜(1))𝑛2/4  intercalates, matching a lower bound due to Kwan and Sudakov and resolving an old conjecture of McKay and Wanless.","lang":"eng"}],"oa":1,"file_date_updated":"2023-02-03T09:43:38Z","date_published":"2022-08-01T00:00:00Z","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","file":[{"content_type":"application/pdf","access_level":"open_access","date_created":"2023-02-03T09:43:38Z","checksum":"02d74e7ae955ba3c808e2a8aebe6ef98","file_size":233758,"success":1,"file_name":"2022_BulletinMathSociety_Kwan.pdf","relation":"main_file","creator":"dernst","file_id":"12499","date_updated":"2023-02-03T09:43:38Z"}],"volume":54,"author":[{"id":"5fca0887-a1db-11eb-95d1-ca9d5e0453b3","last_name":"Kwan","full_name":"Kwan, Matthew Alan","orcid":"0000-0002-4003-7567","first_name":"Matthew Alan"},{"first_name":"Ashwin","full_name":"Sah, Ashwin","last_name":"Sah"},{"first_name":"Mehtaab","last_name":"Sawhney","full_name":"Sawhney, Mehtaab"}],"external_id":{"isi":["000779920900001"],"arxiv":["2106.11932"]},"status":"public","acknowledgement":"We thank Zach Hunter for pointing out some important typographical errors. We also thank the referee for several remarks which helped improve the paper substantially.\r\nKwan was supported by NSF grant DMS-1953990. Sah and Sawhney were supported by NSF Graduate Research Fellowship Program DGE-1745302.","year":"2022","publication":"Bulletin of the London Mathematical Society","language":[{"iso":"eng"}],"page":"1420-1438","issue":"4"},{"month":"04","date_published":"2022-04-28T00:00:00Z","file":[{"checksum":"96c1b86cdf25481f2a52972fcc45ca7f","content_type":"application/x-zip-compressed","access_level":"open_access","date_created":"2022-04-22T09:39:03Z","file_name":"Data_Code.zip","success":1,"file_size":13260571,"creator":"larathoo","file_id":"11326","relation":"main_file","date_updated":"2022-04-22T09:39:03Z"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","author":[{"last_name":"Surendranadh","id":"455235B8-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6395-386X","full_name":"Surendranadh, Parvathy","first_name":"Parvathy"},{"id":"2CFCFF98-F248-11E8-B48F-1D18A9856A87","last_name":"Arathoon","full_name":"Arathoon, Louise S","orcid":"0000-0003-1771-714X","first_name":"Louise S"},{"full_name":"Baskett, Carina","orcid":"0000-0002-7354-8574","last_name":"Baskett","id":"3B4A7CE2-F248-11E8-B48F-1D18A9856A87","first_name":"Carina"},{"first_name":"David","last_name":"Field","id":"419049E2-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4014-8478","full_name":"Field, David"},{"orcid":"0000-0001-6118-0541","full_name":"Pickup, Melinda","last_name":"Pickup","id":"2C78037E-F248-11E8-B48F-1D18A9856A87","first_name":"Melinda"},{"full_name":"Barton, Nicholas H","orcid":"0000-0002-8548-5240","last_name":"Barton","id":"4880FE40-F248-11E8-B48F-1D18A9856A87","first_name":"Nicholas H"}],"status":"public","publisher":"Institute of Science and Technology Austria","type":"research_data","year":"2022","contributor":[{"contributor_type":"project_member","id":"2CFCFF98-F248-11E8-B48F-1D18A9856A87","last_name":"Arathoon","first_name":"Louise S"},{"orcid":"0000-0002-7354-8574","contributor_type":"project_member","last_name":"Baskett","id":"3B4A7CE2-F248-11E8-B48F-1D18A9856A87","first_name":"Carina"},{"contributor_type":"project_member","orcid":"0000-0002-4014-8478","id":"419049E2-F248-11E8-B48F-1D18A9856A87","last_name":"Field","first_name":"David"},{"first_name":"Melinda","orcid":"0000-0001-6118-0541","contributor_type":"project_member","id":"2C78037E-F248-11E8-B48F-1D18A9856A87","last_name":"Pickup"},{"first_name":"Nicholas H","last_name":"Barton","id":"4880FE40-F248-11E8-B48F-1D18A9856A87","contributor_type":"project_member","orcid":"0000-0002-8548-5240"}],"oa_version":"Published Version","related_material":{"record":[{"relation":"earlier_version","status":"public","id":"9192"},{"id":"8254","status":"public","relation":"earlier_version"},{"status":"public","relation":"used_in_publication","id":"11411"}]},"_id":"11321","doi":"10.15479/at:ista:11321","date_created":"2022-04-22T09:42:24Z","citation":{"chicago":"Surendranadh, Parvathy, Louise S Arathoon, Carina Baskett, David Field, Melinda Pickup, and Nicholas H Barton. “Effects of Fine-Scale Population Structure on the Distribution of Heterozygosity in a Long-Term Study of Antirrhinum Majus.” Institute of Science and Technology Austria, 2022. <a href=\"https://doi.org/10.15479/at:ista:11321\">https://doi.org/10.15479/at:ista:11321</a>.","apa":"Surendranadh, P., Arathoon, L. S., Baskett, C., Field, D., Pickup, M., &#38; Barton, N. H. (2022). Effects of fine-scale population structure on the distribution of heterozygosity in a long-term study of Antirrhinum majus. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/at:ista:11321\">https://doi.org/10.15479/at:ista:11321</a>","mla":"Surendranadh, Parvathy, et al. <i>Effects of Fine-Scale Population Structure on the Distribution of Heterozygosity in a Long-Term Study of Antirrhinum Majus</i>. Institute of Science and Technology Austria, 2022, doi:<a href=\"https://doi.org/10.15479/at:ista:11321\">10.15479/at:ista:11321</a>.","ista":"Surendranadh P, Arathoon LS, Baskett C, Field D, Pickup M, Barton NH. 2022. Effects of fine-scale population structure on the distribution of heterozygosity in a long-term study of Antirrhinum majus, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/at:ista:11321\">10.15479/at:ista:11321</a>.","short":"P. Surendranadh, L.S. Arathoon, C. Baskett, D. Field, M. Pickup, N.H. Barton, (2022).","ieee":"P. Surendranadh, L. S. Arathoon, C. Baskett, D. Field, M. Pickup, and N. H. Barton, “Effects of fine-scale population structure on the distribution of heterozygosity in a long-term study of Antirrhinum majus.” Institute of Science and Technology Austria, 2022.","ama":"Surendranadh P, Arathoon LS, Baskett C, Field D, Pickup M, Barton NH. Effects of fine-scale population structure on the distribution of heterozygosity in a long-term study of Antirrhinum majus. 2022. doi:<a href=\"https://doi.org/10.15479/at:ista:11321\">10.15479/at:ista:11321</a>"},"day":"28","corr_author":"1","article_processing_charge":"No","date_updated":"2025-04-15T08:20:40Z","has_accepted_license":"1","title":"Effects of fine-scale population structure on the distribution of heterozygosity in a long-term study of Antirrhinum majus","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"department":[{"_id":"GradSch"},{"_id":"NiBa"}],"ddc":["570"],"abstract":[{"text":"Here are the research data underlying the publication \"Effects of fine-scale population structure on the distribution of heterozygosity in a long-term study of Antirrhinum majus\" Further information are summed up in the README document. ","lang":"eng"}],"file_date_updated":"2022-04-22T09:39:03Z","oa":1},{"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"title":"A dual formula for the noncommutative transport distance","department":[{"_id":"JaMa"}],"date_updated":"2025-06-12T06:17:37Z","isi":1,"publication_identifier":{"eissn":["1572-9613"],"issn":["0022-4715"]},"ec_funded":1,"_id":"11330","pmid":1,"type":"journal_article","publisher":"Springer Nature","publication_status":"published","oa_version":"Published Version","month":"04","project":[{"_id":"fc31cba2-9c52-11eb-aca3-ff467d239cd2","name":"Taming Complexity in Partial Differential Systems","grant_number":"F6504"},{"call_identifier":"H2020","grant_number":"716117","name":"Optimal Transport and Stochastic Dynamics","_id":"256E75B8-B435-11E9-9278-68D0E5697425"}],"article_type":"original","abstract":[{"text":"In this article we study the noncommutative transport distance introduced by Carlen and Maas and its entropic regularization defined by Becker and Li. We prove a duality formula that can be understood as a quantum version of the dual Benamou–Brenier formulation of the Wasserstein distance in terms of subsolutions of a Hamilton–Jacobi–Bellmann equation.","lang":"eng"}],"ddc":["510","530"],"file_date_updated":"2022-04-29T11:24:23Z","oa":1,"article_processing_charge":"Yes (via OA deal)","article_number":"19","has_accepted_license":"1","scopus_import":"1","date_created":"2022-04-24T22:01:43Z","quality_controlled":"1","citation":{"ista":"Wirth M. 2022. A dual formula for the noncommutative transport distance. Journal of Statistical Physics. 187(2), 19.","apa":"Wirth, M. (2022). A dual formula for the noncommutative transport distance. <i>Journal of Statistical Physics</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s10955-022-02911-9\">https://doi.org/10.1007/s10955-022-02911-9</a>","mla":"Wirth, Melchior. “A Dual Formula for the Noncommutative Transport Distance.” <i>Journal of Statistical Physics</i>, vol. 187, no. 2, 19, Springer Nature, 2022, doi:<a href=\"https://doi.org/10.1007/s10955-022-02911-9\">10.1007/s10955-022-02911-9</a>.","chicago":"Wirth, Melchior. “A Dual Formula for the Noncommutative Transport Distance.” <i>Journal of Statistical Physics</i>. Springer Nature, 2022. <a href=\"https://doi.org/10.1007/s10955-022-02911-9\">https://doi.org/10.1007/s10955-022-02911-9</a>.","ama":"Wirth M. A dual formula for the noncommutative transport distance. <i>Journal of Statistical Physics</i>. 2022;187(2). doi:<a href=\"https://doi.org/10.1007/s10955-022-02911-9\">10.1007/s10955-022-02911-9</a>","ieee":"M. Wirth, “A dual formula for the noncommutative transport distance,” <i>Journal of Statistical Physics</i>, vol. 187, no. 2. Springer Nature, 2022.","short":"M. Wirth, Journal of Statistical Physics 187 (2022)."},"day":"08","corr_author":"1","intvolume":"       187","doi":"10.1007/s10955-022-02911-9","language":[{"iso":"eng"}],"publication":"Journal of Statistical Physics","issue":"2","year":"2022","acknowledgement":"The author wants to thank Jan Maas for helpful comments. He also acknowledges financial support from the Austrian Science Fund (FWF) through Grant Number F65 and from the European Research Council (ERC) under the European Union’s Horizon 2020 Research and Innovation Programme (Grant Agreement No. 716117).\r\nOpen access funding provided by Institute of Science and Technology (IST Austria).","status":"public","date_published":"2022-04-08T00:00:00Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file":[{"date_created":"2022-04-29T11:24:23Z","content_type":"application/pdf","access_level":"open_access","checksum":"f3e0b00884b7dde31347a3756788b473","file_size":362119,"success":1,"file_name":"2022_JourStatisticalPhysics_Wirth.pdf","relation":"main_file","file_id":"11338","creator":"dernst","date_updated":"2022-04-29T11:24:23Z"}],"external_id":{"pmid":["35509951"],"isi":["000780305000001"]},"author":[{"id":"88644358-0A0E-11EA-8FA5-49A33DDC885E","last_name":"Wirth","orcid":"0000-0002-0519-4241","full_name":"Wirth, Melchior","first_name":"Melchior"}],"volume":187},{"date_published":"2022-03-28T00:00:00Z","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","external_id":{"isi":["000926506800003"],"arxiv":["2105.11827"]},"author":[{"first_name":"George","last_name":"Danezis","full_name":"Danezis, George"},{"full_name":"Kokoris Kogias, Eleftherios","id":"f5983044-d7ef-11ea-ac6d-fd1430a26d30","last_name":"Kokoris Kogias","first_name":"Eleftherios"},{"first_name":"Alberto","full_name":"Sonnino, Alberto","last_name":"Sonnino"},{"last_name":"Spiegelman","full_name":"Spiegelman, Alexander","first_name":"Alexander"}],"status":"public","year":"2022","publication":"Proceedings of the 17th European Conference on Computer Systems","language":[{"iso":"eng"}],"page":"34-50","doi":"10.1145/3492321.3519594","scopus_import":"1","quality_controlled":"1","date_created":"2022-04-24T22:01:43Z","citation":{"short":"G. Danezis, E. Kokoris Kogias, A. Sonnino, A. Spiegelman, in:, Proceedings of the 17th European Conference on Computer Systems, Association for Computing Machinery, 2022, pp. 34–50.","ieee":"G. Danezis, E. Kokoris Kogias, A. Sonnino, and A. Spiegelman, “Narwhal and Tusk: A DAG-based mempool and efficient BFT consensus,” in <i>Proceedings of the 17th European Conference on Computer Systems</i>, Rennes, France, 2022, pp. 34–50.","ama":"Danezis G, Kokoris Kogias E, Sonnino A, Spiegelman A. Narwhal and Tusk: A DAG-based mempool and efficient BFT consensus. In: <i>Proceedings of the 17th European Conference on Computer Systems</i>. Association for Computing Machinery; 2022:34-50. doi:<a href=\"https://doi.org/10.1145/3492321.3519594\">10.1145/3492321.3519594</a>","mla":"Danezis, George, et al. “Narwhal and Tusk: A DAG-Based Mempool and Efficient BFT Consensus.” <i>Proceedings of the 17th European Conference on Computer Systems</i>, Association for Computing Machinery, 2022, pp. 34–50, doi:<a href=\"https://doi.org/10.1145/3492321.3519594\">10.1145/3492321.3519594</a>.","chicago":"Danezis, George, Eleftherios Kokoris Kogias, Alberto Sonnino, and Alexander Spiegelman. “Narwhal and Tusk: A DAG-Based Mempool and Efficient BFT Consensus.” In <i>Proceedings of the 17th European Conference on Computer Systems</i>, 34–50. Association for Computing Machinery, 2022. <a href=\"https://doi.org/10.1145/3492321.3519594\">https://doi.org/10.1145/3492321.3519594</a>.","apa":"Danezis, G., Kokoris Kogias, E., Sonnino, A., &#38; Spiegelman, A. (2022). Narwhal and Tusk: A DAG-based mempool and efficient BFT consensus. In <i>Proceedings of the 17th European Conference on Computer Systems</i> (pp. 34–50). Rennes, France: Association for Computing Machinery. <a href=\"https://doi.org/10.1145/3492321.3519594\">https://doi.org/10.1145/3492321.3519594</a>","ista":"Danezis G, Kokoris Kogias E, Sonnino A, Spiegelman A. 2022. Narwhal and Tusk: A DAG-based mempool and efficient BFT consensus. Proceedings of the 17th European Conference on Computer Systems. EuroSys: European Conference on Computer Systems, 34–50."},"day":"28","article_processing_charge":"No","conference":{"location":"Rennes, France","name":"EuroSys: European Conference on Computer Systems","end_date":"2022-04-08","start_date":"2022-04-05"},"abstract":[{"text":"We propose separating the task of reliable transaction dissemination from transaction ordering, to enable high-performance Byzantine fault-tolerant quorum-based consensus. We design and evaluate a mempool protocol, Narwhal, specializing in high-throughput reliable dissemination and storage of causal histories of transactions. Narwhal tolerates an asynchronous network and maintains high performance despite failures. Narwhal is designed to easily scale-out using multiple workers at each validator, and we demonstrate that there is no foreseeable limit to the throughput we can achieve.\r\nComposing Narwhal with a partially synchronous consensus protocol (Narwhal-HotStuff) yields significantly better throughput even in the presence of faults or intermittent loss of liveness due to asynchrony. However, loss of liveness can result in higher latency. To achieve overall good performance when faults occur we design Tusk, a zero-message overhead asynchronous consensus protocol, to work with Narwhal. We demonstrate its high performance under a variety of configurations and faults.\r\nAs a summary of results, on a WAN, Narwhal-Hotstuff achieves over 130,000 tx/sec at less than 2-sec latency compared with 1,800 tx/sec at 1-sec latency for Hotstuff. Additional workers increase throughput linearly to 600,000 tx/sec without any latency increase. Tusk achieves 160,000 tx/sec with about 3 seconds latency. Under faults, both protocols maintain high throughput, but Narwhal-HotStuff suffers from increased latency.","lang":"eng"}],"oa":1,"month":"03","main_file_link":[{"url":" https://doi.org/10.48550/arXiv.2105.11827","open_access":"1"}],"type":"conference","publisher":"Association for Computing Machinery","publication_status":"published","oa_version":"Preprint","arxiv":1,"_id":"11331","isi":1,"publication_identifier":{"isbn":["9781450391627"]},"date_updated":"2023-08-03T06:38:40Z","title":"Narwhal and Tusk: A DAG-based mempool and efficient BFT consensus","department":[{"_id":"ElKo"}]},{"date_created":"2022-04-24T22:01:44Z","quality_controlled":"1","citation":{"ista":"Schnelli K, Xu Y. 2022. Convergence rate to the Tracy–Widom laws for the largest Eigenvalue of Wigner matrices. Communications in Mathematical Physics. 393, 839–907.","chicago":"Schnelli, Kevin, and Yuanyuan Xu. “Convergence Rate to the Tracy–Widom Laws for the Largest Eigenvalue of Wigner Matrices.” <i>Communications in Mathematical Physics</i>. Springer Nature, 2022. <a href=\"https://doi.org/10.1007/s00220-022-04377-y\">https://doi.org/10.1007/s00220-022-04377-y</a>.","apa":"Schnelli, K., &#38; Xu, Y. (2022). Convergence rate to the Tracy–Widom laws for the largest Eigenvalue of Wigner matrices. <i>Communications in Mathematical Physics</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s00220-022-04377-y\">https://doi.org/10.1007/s00220-022-04377-y</a>","mla":"Schnelli, Kevin, and Yuanyuan Xu. “Convergence Rate to the Tracy–Widom Laws for the Largest Eigenvalue of Wigner Matrices.” <i>Communications in Mathematical Physics</i>, vol. 393, Springer Nature, 2022, pp. 839–907, doi:<a href=\"https://doi.org/10.1007/s00220-022-04377-y\">10.1007/s00220-022-04377-y</a>.","ama":"Schnelli K, Xu Y. Convergence rate to the Tracy–Widom laws for the largest Eigenvalue of Wigner matrices. <i>Communications in Mathematical Physics</i>. 2022;393:839-907. doi:<a href=\"https://doi.org/10.1007/s00220-022-04377-y\">10.1007/s00220-022-04377-y</a>","ieee":"K. Schnelli and Y. Xu, “Convergence rate to the Tracy–Widom laws for the largest Eigenvalue of Wigner matrices,” <i>Communications in Mathematical Physics</i>, vol. 393. Springer Nature, pp. 839–907, 2022.","short":"K. Schnelli, Y. Xu, Communications in Mathematical Physics 393 (2022) 839–907."},"scopus_import":"1","day":"01","intvolume":"       393","doi":"10.1007/s00220-022-04377-y","ddc":["510"],"abstract":[{"text":"We show that the fluctuations of the largest eigenvalue of a real symmetric or complex Hermitian Wigner matrix of size N converge to the Tracy–Widom laws at a rate O(N^{-1/3+\\omega }), as N tends to infinity. For Wigner matrices this improves the previous rate O(N^{-2/9+\\omega }) obtained by Bourgade (J Eur Math Soc, 2021) for generalized Wigner matrices. Our result follows from a Green function comparison theorem, originally introduced by Erdős et al. (Adv Math 229(3):1435–1515, 2012) to prove edge universality, on a finer spectral parameter scale with improved error estimates. The proof relies on the continuous Green function flow induced by a matrix-valued Ornstein–Uhlenbeck process. Precise estimates on leading contributions from the third and fourth order moments of the matrix entries are obtained using iterative cumulant expansions and recursive comparisons for correlation functions, along with uniform convergence estimates for correlation kernels of the Gaussian invariant ensembles.","lang":"eng"}],"oa":1,"file_date_updated":"2022-08-05T06:01:13Z","article_processing_charge":"No","has_accepted_license":"1","acknowledgement":"Kevin Schnelli is supported in parts by the Swedish Research Council Grant VR-2017-05195, and the Knut and Alice Wallenberg Foundation. Yuanyuan Xu is supported by the Swedish Research Council Grant VR-2017-05195 and the ERC Advanced Grant “RMTBeyond” No. 101020331.","status":"public","file":[{"relation":"main_file","file_id":"11726","creator":"dernst","date_updated":"2022-08-05T06:01:13Z","date_created":"2022-08-05T06:01:13Z","content_type":"application/pdf","access_level":"open_access","checksum":"bee0278c5efa9a33d9a2dc8d354a6c51","file_size":1141462,"file_name":"2022_CommunMathPhys_Schnelli.pdf","success":1}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_published":"2022-07-01T00:00:00Z","volume":393,"external_id":{"pmid":["35765414"],"arxiv":["2102.04330"],"isi":["000782737200001"]},"author":[{"last_name":"Schnelli","id":"434AD0AE-F248-11E8-B48F-1D18A9856A87","full_name":"Schnelli, Kevin","orcid":"0000-0003-0954-3231","first_name":"Kevin"},{"first_name":"Yuanyuan","id":"7902bdb1-a2a4-11eb-a164-c9216f71aea3","last_name":"Xu","full_name":"Xu, Yuanyuan","orcid":"0000-0003-1559-1205"}],"publication":"Communications in Mathematical Physics","language":[{"iso":"eng"}],"page":"839-907","year":"2022","isi":1,"publication_identifier":{"issn":["0010-3616"],"eissn":["1432-0916"]},"_id":"11332","ec_funded":1,"pmid":1,"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"title":"Convergence rate to the Tracy–Widom laws for the largest Eigenvalue of Wigner matrices","department":[{"_id":"LaEr"}],"date_updated":"2025-06-11T14:01:05Z","month":"07","project":[{"_id":"62796744-2b32-11ec-9570-940b20777f1d","grant_number":"101020331","call_identifier":"H2020","name":"Random matrices beyond Wigner-Dyson-Mehta"}],"article_type":"original","arxiv":1,"publisher":"Springer Nature","type":"journal_article","publication_status":"published","oa_version":"Published Version"},{"tmp":{"name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)","image":"/images/cc_by_nc.png","legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","short":"CC BY-NC (4.0)"},"title":"Parthenogenesis in Darevskia lizards: A rare outcome of common hybridization, not a common outcome of rare hybridization","department":[{"_id":"NiBa"},{"_id":"BeVi"}],"date_updated":"2025-04-14T07:48:21Z","publication_identifier":{"issn":["0014-3820"],"eissn":["1558-5646"]},"isi":1,"pmid":1,"_id":"11334","ec_funded":1,"oa_version":"Published Version","publisher":"Wiley","type":"journal_article","publication_status":"published","article_type":"original","project":[{"_id":"265B41B8-B435-11E9-9278-68D0E5697425","name":"Theoretical and empirical approaches to understanding Parallel Adaptation","grant_number":"797747","call_identifier":"H2020"}],"month":"05","oa":1,"file_date_updated":"2022-08-05T06:19:28Z","ddc":["570"],"abstract":[{"text":"Hybridization is a common evolutionary process with multiple possible outcomes. In vertebrates, interspecific hybridization has repeatedly generated parthenogenetic hybrid species. However, it is unknown whether the generation of parthenogenetic hybrids is a rare outcome of frequent hybridization between sexual species within a genus or the typical outcome of rare hybridization events. Darevskia is a genus of rock lizards with both hybrid parthenogenetic and sexual species. Using capture sequencing, we estimate phylogenetic relationships and gene flow among the sexual species, to determine how introgressive hybridization relates to the origins of parthenogenetic hybrids. We find evidence for widespread hybridization with gene flow, both between recently diverged species and deep branches. Surprisingly, we find no signal of gene flow between parental species of the parthenogenetic hybrids, suggesting that the parental pairs were either reproductively or geographically isolated early in their divergence. The generation of parthenogenetic hybrids in Darevskia is, then, a rare outcome of the total occurrence of hybridization within the genus, but the typical outcome when specific species pairs hybridize. Our results question the conventional view that parthenogenetic lineages are generated by hybridization in a window of divergence. Instead, they suggest that some lineages possess specific properties that underpin successful parthenogenetic reproduction.","lang":"eng"}],"has_accepted_license":"1","article_processing_charge":"No","day":"01","quality_controlled":"1","date_created":"2022-04-24T22:01:44Z","citation":{"ista":"Freitas S, Westram AM, Schwander T, Arakelyan M, Ilgaz Ç, Kumlutas Y, Harris DJ, Carretero MA, Butlin RK. 2022. Parthenogenesis in Darevskia lizards: A rare outcome of common hybridization, not a common outcome of rare hybridization. Evolution. 76(5), 899–914.","mla":"Freitas, Susana, et al. “Parthenogenesis in Darevskia Lizards: A Rare Outcome of Common Hybridization, Not a Common Outcome of Rare Hybridization.” <i>Evolution</i>, vol. 76, no. 5, Wiley, 2022, pp. 899–914, doi:<a href=\"https://doi.org/10.1111/evo.14462\">10.1111/evo.14462</a>.","chicago":"Freitas, Susana, Anja M Westram, Tanja Schwander, Marine Arakelyan, Çetin Ilgaz, Yusuf Kumlutas, David James Harris, Miguel A. Carretero, and Roger K. Butlin. “Parthenogenesis in Darevskia Lizards: A Rare Outcome of Common Hybridization, Not a Common Outcome of Rare Hybridization.” <i>Evolution</i>. Wiley, 2022. <a href=\"https://doi.org/10.1111/evo.14462\">https://doi.org/10.1111/evo.14462</a>.","apa":"Freitas, S., Westram, A. M., Schwander, T., Arakelyan, M., Ilgaz, Ç., Kumlutas, Y., … Butlin, R. K. (2022). Parthenogenesis in Darevskia lizards: A rare outcome of common hybridization, not a common outcome of rare hybridization. <i>Evolution</i>. Wiley. <a href=\"https://doi.org/10.1111/evo.14462\">https://doi.org/10.1111/evo.14462</a>","short":"S. Freitas, A.M. Westram, T. Schwander, M. Arakelyan, Ç. Ilgaz, Y. Kumlutas, D.J. Harris, M.A. Carretero, R.K. Butlin, Evolution 76 (2022) 899–914.","ieee":"S. Freitas <i>et al.</i>, “Parthenogenesis in Darevskia lizards: A rare outcome of common hybridization, not a common outcome of rare hybridization,” <i>Evolution</i>, vol. 76, no. 5. Wiley, pp. 899–914, 2022.","ama":"Freitas S, Westram AM, Schwander T, et al. Parthenogenesis in Darevskia lizards: A rare outcome of common hybridization, not a common outcome of rare hybridization. <i>Evolution</i>. 2022;76(5):899-914. doi:<a href=\"https://doi.org/10.1111/evo.14462\">10.1111/evo.14462</a>"},"scopus_import":"1","doi":"10.1111/evo.14462","intvolume":"        76","issue":"5","language":[{"iso":"eng"}],"page":"899-914","publication":"Evolution","year":"2022","acknowledgement":"The authors thank A. van der Meijden and F. Ahmadzadeh for providing specimens and tissue samples, and A. Vardanyan, C. Corti, F. Jorge, and S. Drovetski for support during field work. The authors also thank S. Qiu for assistance with python scripting, S. Rocha for her support in BEAST analysis, and B. Wielstra for his comments on\r\na previous version of the manuscript. SF was funded by FCT grant SFRH/BD/81483/2011 (a PhD individual grant). AMW was funded by the European Union’s Horizon 2020 research and innovation programme under Marie Skłodowska-Curie grant agreement no. 797747. TS acknowledges funding from the Swiss National Science Foundation (grants\r\nPP00P3_170627 and 31003A_182495). The work was carried out under financial support of the projects “Preserving Armenian biodiversity: Joint Portuguese – Armenian program for training in modern conservation biology” of Gulbenkian Foundation (Portugal) and PTDC/BIABEC/101256/2008 of Fundação para a Ciência e a Tecnologia (FCT, Portugal).","status":"public","volume":76,"author":[{"full_name":"Freitas, Susana","last_name":"Freitas","first_name":"Susana"},{"last_name":"Westram","id":"3C147470-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-1050-4969","full_name":"Westram, Anja M","first_name":"Anja M"},{"first_name":"Tanja","last_name":"Schwander","full_name":"Schwander, Tanja"},{"last_name":"Arakelyan","full_name":"Arakelyan, Marine","first_name":"Marine"},{"first_name":"Çetin","last_name":"Ilgaz","full_name":"Ilgaz, Çetin"},{"first_name":"Yusuf","last_name":"Kumlutas","full_name":"Kumlutas, Yusuf"},{"first_name":"David James","last_name":"Harris","full_name":"Harris, David James"},{"first_name":"Miguel A.","full_name":"Carretero, Miguel A.","last_name":"Carretero"},{"first_name":"Roger K.","last_name":"Butlin","full_name":"Butlin, Roger K."}],"external_id":{"isi":["000781632500001"],"pmid":["35323995"]},"date_published":"2022-05-01T00:00:00Z","file":[{"relation":"main_file","file_id":"11729","creator":"dernst","date_updated":"2022-08-05T06:19:28Z","date_created":"2022-08-05T06:19:28Z","access_level":"open_access","content_type":"application/pdf","checksum":"c27c025ae9afcf6c804d46a909775ee5","file_size":2855214,"file_name":"2022_Evolution_Freitas.pdf","success":1}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8"},{"intvolume":"         8","related_material":{"link":[{"url":"https://ista.ac.at/en/news/whole-tissue-shapes-brain-development/","description":"News on ISTA website","relation":"press_release"}]},"doi":"10.1126/sciadv.abq1263","scopus_import":"1","date_created":"2022-04-26T15:04:50Z","quality_controlled":"1","citation":{"apa":"Amberg, N., Pauler, F., Streicher, C., &#38; Hippenmeyer, S. (2022). Tissue-wide genetic and cellular landscape shapes the execution of sequential PRC2 functions in neural stem cell lineage progression. <i>Science Advances</i>. American Association for the Advancement of Science. <a href=\"https://doi.org/10.1126/sciadv.abq1263\">https://doi.org/10.1126/sciadv.abq1263</a>","mla":"Amberg, Nicole, et al. “Tissue-Wide Genetic and Cellular Landscape Shapes the Execution of Sequential PRC2 Functions in Neural Stem Cell Lineage Progression.” <i>Science Advances</i>, vol. 8, no. 44, abq1263, American Association for the Advancement of Science, 2022, doi:<a href=\"https://doi.org/10.1126/sciadv.abq1263\">10.1126/sciadv.abq1263</a>.","chicago":"Amberg, Nicole, Florian Pauler, Carmen Streicher, and Simon Hippenmeyer. “Tissue-Wide Genetic and Cellular Landscape Shapes the Execution of Sequential PRC2 Functions in Neural Stem Cell Lineage Progression.” <i>Science Advances</i>. American Association for the Advancement of Science, 2022. <a href=\"https://doi.org/10.1126/sciadv.abq1263\">https://doi.org/10.1126/sciadv.abq1263</a>.","ista":"Amberg N, Pauler F, Streicher C, Hippenmeyer S. 2022. Tissue-wide genetic and cellular landscape shapes the execution of sequential PRC2 functions in neural stem cell lineage progression. Science Advances. 8(44), abq1263.","ama":"Amberg N, Pauler F, Streicher C, Hippenmeyer S. Tissue-wide genetic and cellular landscape shapes the execution of sequential PRC2 functions in neural stem cell lineage progression. <i>Science Advances</i>. 2022;8(44). doi:<a href=\"https://doi.org/10.1126/sciadv.abq1263\">10.1126/sciadv.abq1263</a>","short":"N. Amberg, F. Pauler, C. Streicher, S. Hippenmeyer, Science Advances 8 (2022).","ieee":"N. Amberg, F. Pauler, C. Streicher, and S. Hippenmeyer, “Tissue-wide genetic and cellular landscape shapes the execution of sequential PRC2 functions in neural stem cell lineage progression,” <i>Science Advances</i>, vol. 8, no. 44. American Association for the Advancement of Science, 2022."},"day":"01","corr_author":"1","article_processing_charge":"No","article_number":"abq1263","has_accepted_license":"1","ddc":["570"],"abstract":[{"lang":"eng","text":"The generation of a correctly-sized cerebral cortex with all-embracing neuronal and glial cell-type diversity critically depends on faithful radial glial progenitor (RGP) cell proliferation/differentiation programs. Temporal RGP lineage progression is regulated by Polycomb Repressive Complex 2 (PRC2) and loss of PRC2 activity results in severe neurogenesis defects and microcephaly. How PRC2-dependent gene expression instructs RGP lineage progression is unknown. Here we utilize Mosaic Analysis with Double Markers (MADM)-based single cell technology and demonstrate that PRC2 is not cell-autonomously required in neurogenic RGPs but rather acts at the global tissue-wide level. Conversely, cortical astrocyte production and maturation is cell-autonomously controlled by PRC2-dependent transcriptional regulation. We thus reveal highly distinct and sequential PRC2 functions in RGP lineage progression that are dependent on complex interplays between intrinsic and tissue-wide properties. In a broader context our results imply a critical role for the genetic and cellular niche environment in neural stem cell behavior."}],"file_date_updated":"2023-03-21T14:18:10Z","oa":1,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","file":[{"date_created":"2023-03-21T14:18:10Z","access_level":"open_access","content_type":"application/pdf","checksum":"0117023e188542082ca6693cf39e7f03","file_size":2973998,"success":1,"file_name":"sciadv.abq1263.pdf","relation":"main_file","file_id":"12742","creator":"patrickd","date_updated":"2023-03-21T14:18:10Z"}],"date_published":"2022-11-01T00:00:00Z","author":[{"id":"4CD6AAC6-F248-11E8-B48F-1D18A9856A87","last_name":"Amberg","orcid":"0000-0002-3183-8207","full_name":"Amberg, Nicole","first_name":"Nicole"},{"first_name":"Florian","id":"48EA0138-F248-11E8-B48F-1D18A9856A87","last_name":"Pauler","orcid":"0000-0002-7462-0048","full_name":"Pauler, Florian"},{"first_name":"Carmen","full_name":"Streicher, Carmen","last_name":"Streicher","id":"36BCB99C-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Simon","full_name":"Hippenmeyer, Simon","orcid":"0000-0003-2279-1061","id":"37B36620-F248-11E8-B48F-1D18A9856A87","last_name":"Hippenmeyer"}],"external_id":{"pmid":["36322669"],"isi":["000918406800019"]},"volume":8,"status":"public","acknowledgement":"We thank A. Heger (IST Austria Preclinical Facility), A. Sommer and C. Czepe (VBCF GmbH, NGS  Unit)  and  S.  Gharagozlou  for  technical  support.  This  research  was  supported  by  the  Scientific  Service  Units  (SSU)  of  IST  Austria  through  resources  provided  by  the  Imaging  &  Optics Facility (IOF), Lab Support Facility (LSF), and Preclinical Facility (PCF). N.A. received funding   from   the   FWF   Firnberg-Programm   (T   1031).   The   work   was   supported   by   IST   institutional  funds  and  by  the  European  Research  Council  (ERC)  under  the  European  Union’s  Horizon 2020 research and innovation program (grant agreement 725780 LinPro) to S.H.","year":"2022","language":[{"iso":"eng"}],"publication":"Science Advances","issue":"44","ec_funded":1,"_id":"11336","pmid":1,"isi":1,"acknowledged_ssus":[{"_id":"PreCl"},{"_id":"Bio"},{"_id":"LifeSc"}],"publication_identifier":{"issn":["2375-2548"]},"date_updated":"2025-09-09T14:30:38Z","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"title":"Tissue-wide genetic and cellular landscape shapes the execution of sequential PRC2 functions in neural stem cell lineage progression","department":[{"_id":"SiHi"}],"month":"11","project":[{"name":"Principles of Neural Stem Cell Lineage Progression in Cerebral Cortex Development","call_identifier":"H2020","grant_number":"725780","_id":"260018B0-B435-11E9-9278-68D0E5697425"},{"_id":"268F8446-B435-11E9-9278-68D0E5697425","name":"Role of Eed in neural stem cell lineage progression","grant_number":"T01031","call_identifier":"FWF"}],"article_type":"original","type":"journal_article","publication_status":"published","publisher":"American Association for the Advancement of Science","oa_version":"Published Version"},{"article_type":"original","project":[{"name":"Non-Ergodic Quantum Matter: Universality, Dynamics and Control","grant_number":"850899","call_identifier":"H2020","_id":"23841C26-32DE-11EA-91FC-C7463DDC885E"},{"name":"ISTplus - Postdoctoral Fellowships","grant_number":"754411","call_identifier":"H2020","_id":"260C2330-B435-11E9-9278-68D0E5697425"}],"month":"04","main_file_link":[{"url":" https://doi.org/10.48550/arXiv.2112.11273","open_access":"1"}],"oa_version":"Preprint","type":"journal_article","publisher":"American Physical Society","publication_status":"published","arxiv":1,"_id":"11337","ec_funded":1,"publication_identifier":{"eisbn":["2469-9969"],"issn":["2469-9950"]},"isi":1,"date_updated":"2025-04-14T07:43:57Z","title":"Entanglement and precession in two-dimensional dynamical quantum phase transitions","department":[{"_id":"MaSe"}],"volume":105,"author":[{"orcid":"0000-0002-4842-6671","full_name":"De Nicola, Stefano","id":"42832B76-F248-11E8-B48F-1D18A9856A87","last_name":"De Nicola","first_name":"Stefano"},{"id":"36EBAD38-F248-11E8-B48F-1D18A9856A87","last_name":"Michailidis","full_name":"Michailidis, Alexios","orcid":"0000-0002-8443-1064","first_name":"Alexios"},{"first_name":"Maksym","id":"47809E7E-F248-11E8-B48F-1D18A9856A87","last_name":"Serbyn","orcid":"0000-0002-2399-5827","full_name":"Serbyn, Maksym"}],"external_id":{"isi":["000806812400004"],"arxiv":["2112.11273"]},"date_published":"2022-04-15T00:00:00Z","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","status":"public","acknowledgement":"We acknowledge support by the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (Grant Agreement No. 850899).\r\nS.D.N. also acknowledges funding from the Institute of Science and Technology (IST) Austria, and from the European Union’s Horizon 2020 Research and Innovation Programme under the Marie Skłodowska-Curie Grant Agreement No. 754411.","year":"2022","publication":"Physical Review B","language":[{"iso":"eng"}],"doi":"10.1103/PhysRevB.105.165149","intvolume":"       105","corr_author":"1","day":"15","citation":{"ieee":"S. De Nicola, A. Michailidis, and M. Serbyn, “Entanglement and precession in two-dimensional dynamical quantum phase transitions,” <i>Physical Review B</i>, vol. 105. American Physical Society, 2022.","short":"S. De Nicola, A. Michailidis, M. Serbyn, Physical Review B 105 (2022).","ama":"De Nicola S, Michailidis A, Serbyn M. Entanglement and precession in two-dimensional dynamical quantum phase transitions. <i>Physical Review B</i>. 2022;105. doi:<a href=\"https://doi.org/10.1103/PhysRevB.105.165149\">10.1103/PhysRevB.105.165149</a>","ista":"De Nicola S, Michailidis A, Serbyn M. 2022. Entanglement and precession in two-dimensional dynamical quantum phase transitions. Physical Review B. 105, 165149.","mla":"De Nicola, Stefano, et al. “Entanglement and Precession in Two-Dimensional Dynamical Quantum Phase Transitions.” <i>Physical Review B</i>, vol. 105, 165149, American Physical Society, 2022, doi:<a href=\"https://doi.org/10.1103/PhysRevB.105.165149\">10.1103/PhysRevB.105.165149</a>.","apa":"De Nicola, S., Michailidis, A., &#38; Serbyn, M. (2022). Entanglement and precession in two-dimensional dynamical quantum phase transitions. <i>Physical Review B</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevB.105.165149\">https://doi.org/10.1103/PhysRevB.105.165149</a>","chicago":"De Nicola, Stefano, Alexios Michailidis, and Maksym Serbyn. “Entanglement and Precession in Two-Dimensional Dynamical Quantum Phase Transitions.” <i>Physical Review B</i>. American Physical Society, 2022. <a href=\"https://doi.org/10.1103/PhysRevB.105.165149\">https://doi.org/10.1103/PhysRevB.105.165149</a>."},"quality_controlled":"1","date_created":"2022-04-28T08:06:10Z","scopus_import":"1","article_number":"165149","article_processing_charge":"No","oa":1,"abstract":[{"lang":"eng","text":"Nonanalytic points in the return probability of a quantum state as a function of time, known as dynamical quantum phase transitions (DQPTs), have received great attention in recent years, but the understanding of their mechanism is still incomplete. In our recent work [Phys. Rev. Lett. 126, 040602 (2021)], we demonstrated that one-dimensional DQPTs can be produced by two distinct mechanisms, namely semiclassical precession and entanglement generation, leading to the definition of precession (pDQPTs) and entanglement (eDQPTs) dynamical quantum phase transitions. In this manuscript, we extend and investigate the notion of p- and eDQPTs in two-dimensional systems by considering semi-infinite ladders of varying width. For square lattices, we find that pDQPTs and eDQPTs persist and are characterized by similar phenomenology as in 1D: pDQPTs are associated with a magnetization sign change and a wide entanglement gap, while eDQPTs correspond to suppressed local observables and avoided crossings in the entanglement spectrum. However, DQPTs show higher sensitivity to the ladder width and other details, challenging the extrapolation to the thermodynamic limit especially for eDQPTs. Moving to honeycomb lattices, we also demonstrate that lattices with an odd number of nearest neighbors give rise to phenomenologies beyond the one-dimensional classification."}]},{"file":[{"file_name":"2022_CommBiology_Glover.pdf","success":1,"file_size":2827723,"checksum":"7c6f76ab17393d650825cc240edc84b3","date_created":"2022-05-02T06:26:26Z","access_level":"open_access","content_type":"application/pdf","date_updated":"2022-05-02T06:26:26Z","file_id":"11342","creator":"dernst","relation":"main_file"}],"date_published":"2022-04-20T00:00:00Z","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","volume":5,"author":[{"first_name":"Georgina","last_name":"Glover","full_name":"Glover, Georgina"},{"full_name":"Voliotis, Margaritis","last_name":"Voliotis","first_name":"Margaritis"},{"first_name":"Urszula","last_name":"Łapińska","full_name":"Łapińska, Urszula"},{"first_name":"Brandon M.","full_name":"Invergo, Brandon M.","last_name":"Invergo"},{"first_name":"Darren","full_name":"Soanes, Darren","last_name":"Soanes"},{"first_name":"Paul","full_name":"O’Neill, Paul","last_name":"O’Neill"},{"full_name":"Moore, Karen","last_name":"Moore","first_name":"Karen"},{"first_name":"Nela","last_name":"Nikolic","id":"42D9CABC-F248-11E8-B48F-1D18A9856A87","full_name":"Nikolic, Nela","orcid":"0000-0001-9068-6090"},{"first_name":"Peter","last_name":"Petrov","full_name":"Petrov, Peter"},{"first_name":"David S.","last_name":"Milner","full_name":"Milner, David S."},{"last_name":"Roy","full_name":"Roy, Sumita","first_name":"Sumita"},{"first_name":"Kate","full_name":"Heesom, Kate","last_name":"Heesom"},{"first_name":"Thomas A.","full_name":"Richards, Thomas A.","last_name":"Richards"},{"first_name":"Krasimira","full_name":"Tsaneva-Atanasova, Krasimira","last_name":"Tsaneva-Atanasova"},{"last_name":"Pagliara","full_name":"Pagliara, Stefano","first_name":"Stefano"}],"external_id":{"isi":["000784143400001"],"pmid":["35444215"]},"status":"public","acknowledgement":"G.G. was supported by an EPSRC DTP PhD studentship (EP/M506527/1). M.V. and K.T.A. gratefully acknowledge financial support from the EPSRC (EP/N014391/1). U.L. was supported through a BBSRC grant (BB/V008021/1) and an MRC Proximity to Discovery EXCITEME2 grant (MCPC17189). This work was further supported by a Royal Society Research Grant (RG180007) awarded to S.P. and a QUEX Initiator grant awarded to S.P. and K.T.A.. D.S.M., T.A.R. and S.P.’s work in this area is also supported by a Marie Skłodowska-Curie project SINGEK (H2020-MSCA-ITN-2015-675752) and the Gordon and Betty Moore Foundation Marine Microbiology Initiative (GBMF5514). B.M.I. acknowledges support from a Wellcome Trust Institutional Strategic Support Award to the University of Exeter (204909/Z/16/Z). This project utilised equipment funded by the Wellcome Trust Institutional Strategic Support Fund (WT097835MF), Wellcome Trust Multi User Equipment Award (WT101650MA) and BBSRC LOLA award (BB/K003240/1).","year":"2022","language":[{"iso":"eng"}],"publication":"Communications Biology","intvolume":"         5","doi":"10.1038/s42003-022-03336-6","date_created":"2022-05-01T22:01:41Z","quality_controlled":"1","citation":{"short":"G. Glover, M. Voliotis, U. Łapińska, B.M. Invergo, D. Soanes, P. O’Neill, K. Moore, N. Nikolic, P. Petrov, D.S. Milner, S. Roy, K. Heesom, T.A. Richards, K. Tsaneva-Atanasova, S. Pagliara, Communications Biology 5 (2022).","ieee":"G. Glover <i>et al.</i>, “Nutrient and salt depletion synergistically boosts glucose metabolism in individual Escherichia coli cells,” <i>Communications Biology</i>, vol. 5. Springer Nature, 2022.","ama":"Glover G, Voliotis M, Łapińska U, et al. Nutrient and salt depletion synergistically boosts glucose metabolism in individual Escherichia coli cells. <i>Communications Biology</i>. 2022;5. doi:<a href=\"https://doi.org/10.1038/s42003-022-03336-6\">10.1038/s42003-022-03336-6</a>","ista":"Glover G, Voliotis M, Łapińska U, Invergo BM, Soanes D, O’Neill P, Moore K, Nikolic N, Petrov P, Milner DS, Roy S, Heesom K, Richards TA, Tsaneva-Atanasova K, Pagliara S. 2022. Nutrient and salt depletion synergistically boosts glucose metabolism in individual Escherichia coli cells. Communications Biology. 5, 385.","chicago":"Glover, Georgina, Margaritis Voliotis, Urszula Łapińska, Brandon M. Invergo, Darren Soanes, Paul O’Neill, Karen Moore, et al. “Nutrient and Salt Depletion Synergistically Boosts Glucose Metabolism in Individual Escherichia Coli Cells.” <i>Communications Biology</i>. Springer Nature, 2022. <a href=\"https://doi.org/10.1038/s42003-022-03336-6\">https://doi.org/10.1038/s42003-022-03336-6</a>.","apa":"Glover, G., Voliotis, M., Łapińska, U., Invergo, B. M., Soanes, D., O’Neill, P., … Pagliara, S. (2022). Nutrient and salt depletion synergistically boosts glucose metabolism in individual Escherichia coli cells. <i>Communications Biology</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s42003-022-03336-6\">https://doi.org/10.1038/s42003-022-03336-6</a>","mla":"Glover, Georgina, et al. “Nutrient and Salt Depletion Synergistically Boosts Glucose Metabolism in Individual Escherichia Coli Cells.” <i>Communications Biology</i>, vol. 5, 385, Springer Nature, 2022, doi:<a href=\"https://doi.org/10.1038/s42003-022-03336-6\">10.1038/s42003-022-03336-6</a>."},"scopus_import":"1","day":"20","article_number":"385","article_processing_charge":"No","has_accepted_license":"1","abstract":[{"text":"The interaction between a cell and its environment shapes fundamental intracellular processes such as cellular metabolism. In most cases growth rate is treated as a proximal metric for understanding the cellular metabolic status. However, changes in growth rate might not reflect metabolic variations in individuals responding to environmental fluctuations. Here we use single-cell microfluidics-microscopy combined with transcriptomics, proteomics and mathematical modelling to quantify the accumulation of glucose within Escherichia coli cells. In contrast to the current consensus, we reveal that environmental conditions which are comparatively unfavourable for growth, where both nutrients and salinity are depleted, increase glucose accumulation rates in individual bacteria and population subsets. We find that these changes in metabolic function are underpinned by variations at the translational and posttranslational level but not at the transcriptional level and are not dictated by changes in cell size. The metabolic response-characteristics identified greatly advance our fundamental understanding of the interactions between bacteria and their environment and have important ramifications when investigating cellular processes where salinity plays an important role.","lang":"eng"}],"ddc":["570"],"oa":1,"file_date_updated":"2022-05-02T06:26:26Z","month":"04","article_type":"original","publisher":"Springer Nature","type":"journal_article","publication_status":"published","oa_version":"Published Version","_id":"11339","pmid":1,"isi":1,"publication_identifier":{"eissn":["2399-3642"]},"date_updated":"2023-08-03T06:45:26Z","department":[{"_id":"CaGu"}],"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"title":"Nutrient and salt depletion synergistically boosts glucose metabolism in individual Escherichia coli cells"},{"citation":{"apa":"Palaia, I., Goyal, A., Del Gado, E., Šamaj, L., &#38; Trizac, E. (2022). Like-charge attraction at the nanoscale: Ground-state correlations and water destructuring. <i>Journal of Physical Chemistry B</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/acs.jpcb.2c00028\">https://doi.org/10.1021/acs.jpcb.2c00028</a>","mla":"Palaia, Ivan, et al. “Like-Charge Attraction at the Nanoscale: Ground-State Correlations and Water Destructuring.” <i>Journal of Physical Chemistry B</i>, vol. 126, no. 16, American Chemical Society, 2022, pp. 3143–49, doi:<a href=\"https://doi.org/10.1021/acs.jpcb.2c00028\">10.1021/acs.jpcb.2c00028</a>.","chicago":"Palaia, Ivan, Abhay Goyal, Emanuela Del Gado, Ladislav Šamaj, and Emmanuel Trizac. “Like-Charge Attraction at the Nanoscale: Ground-State Correlations and Water Destructuring.” <i>Journal of Physical Chemistry B</i>. American Chemical Society, 2022. <a href=\"https://doi.org/10.1021/acs.jpcb.2c00028\">https://doi.org/10.1021/acs.jpcb.2c00028</a>.","ista":"Palaia I, Goyal A, Del Gado E, Šamaj L, Trizac E. 2022. Like-charge attraction at the nanoscale: Ground-state correlations and water destructuring. Journal of Physical Chemistry B. 126(16), 3143–3149.","ama":"Palaia I, Goyal A, Del Gado E, Šamaj L, Trizac E. Like-charge attraction at the nanoscale: Ground-state correlations and water destructuring. <i>Journal of Physical Chemistry B</i>. 2022;126(16):3143-3149. doi:<a href=\"https://doi.org/10.1021/acs.jpcb.2c00028\">10.1021/acs.jpcb.2c00028</a>","short":"I. Palaia, A. Goyal, E. Del Gado, L. Šamaj, E. Trizac, Journal of Physical Chemistry B 126 (2022) 3143–3149.","ieee":"I. Palaia, A. Goyal, E. Del Gado, L. Šamaj, and E. Trizac, “Like-charge attraction at the nanoscale: Ground-state correlations and water destructuring,” <i>Journal of Physical Chemistry B</i>, vol. 126, no. 16. American Chemical Society, pp. 3143–3149, 2022."},"date_created":"2022-05-01T22:01:42Z","quality_controlled":"1","scopus_import":"1","day":"14","intvolume":"       126","doi":"10.1021/acs.jpcb.2c00028","abstract":[{"text":"Like-charge attraction, driven by ionic correlations, challenges our understanding of electrostatics both in soft and hard matter. For two charged planar surfaces confining counterions and water, we prove that, even at relatively low correlation strength, the relevant physics is the ground-state one, oblivious of fluctuations. Based on this, we derive a simple and accurate interaction pressure that fulfills known exact requirements and can be used as an effective potential. We test this equation against implicit-solvent Monte Carlo simulations and against explicit-solvent simulations of cement and several types of clays. We argue that water destructuring under nanometric confinement drastically reduces dielectric screening, enhancing ionic correlations. Our equation of state at reduced permittivity therefore explains the exotic attractive regime reported for these materials, even in the absence of multivalent counterions.","lang":"eng"}],"oa":1,"article_processing_charge":"No","acknowledgement":"We thank Martin Trulsson for useful discussions and for providing us with simulation data. This work has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie grant agreement 674979-NANOTRANS. The support received from VEGA Grant No. 2/0092/21 is acknowledged.","status":"public","date_published":"2022-04-14T00:00:00Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","volume":126,"author":[{"first_name":"Ivan","last_name":"Palaia","id":"9c805cd2-4b75-11ec-a374-db6dd0ed57fa","full_name":"Palaia, Ivan","orcid":" 0000-0002-8843-9485 "},{"first_name":"Abhay","full_name":"Goyal, Abhay","last_name":"Goyal"},{"first_name":"Emanuela","last_name":"Del Gado","full_name":"Del Gado, Emanuela"},{"first_name":"Ladislav","last_name":"Šamaj","full_name":"Šamaj, Ladislav"},{"last_name":"Trizac","full_name":"Trizac, Emmanuel","first_name":"Emmanuel"}],"external_id":{"isi":["000796953700022"],"arxiv":["2203.10524"],"pmid":["35420420"]},"language":[{"iso":"eng"}],"page":"3143-3149","publication":"Journal of Physical Chemistry B","issue":"16","year":"2022","isi":1,"publication_identifier":{"eissn":["1520-5207"],"issn":["1520-6106"]},"_id":"11340","pmid":1,"department":[{"_id":"AnSa"}],"title":"Like-charge attraction at the nanoscale: Ground-state correlations and water destructuring","date_updated":"2025-06-11T13:34:36Z","main_file_link":[{"url":" https://doi.org/10.48550/arXiv.2203.10524","open_access":"1"}],"month":"04","article_type":"original","arxiv":1,"type":"journal_article","publisher":"American Chemical Society","publication_status":"published","oa_version":"Preprint"},{"month":"05","project":[{"_id":"25E83C2C-B435-11E9-9278-68D0E5697425","name":"Optimality principles in responses to antibiotics","grant_number":"303507","call_identifier":"FP7"},{"_id":"25E9AF9E-B435-11E9-9278-68D0E5697425","grant_number":"P27201-B22","call_identifier":"FWF","name":"Revealing the mechanisms underlying drug interactions"}],"article_type":"original","type":"journal_article","publication_status":"published","publisher":"Springer Nature","oa_version":"Published Version","isi":1,"acknowledged_ssus":[{"_id":"LifeSc"},{"_id":"M-Shop"},{"_id":"Bio"}],"publication_identifier":{"issn":["0028-0836"],"eissn":["1476-4687"]},"_id":"11341","ec_funded":1,"pmid":1,"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"title":"Intron-mediated induction of phenotypic heterogeneity","date_updated":"2025-04-14T09:40:45Z","acknowledgement":"We thank the IST Austria Life Science Facility, the Miba Machine Shop and M. Lukačišinová for support with the liquid handling robot; the Bioimaging Facility at IST Austria, J. Power and B. Meier at the University of Cologne, and C. Göttlinger at the FACS Analysis Facility at the Institute for Genetics, University of Cologne, for support with flow cytometry experiments; L. Horst for the development of the automated experimental methods in Cologne; J. Parenteau, S. Abou Elela, G. Stormo, M. Springer and M. Schuldiner for providing us with yeast strains; B. Fernando, T. Fink, G. Ansmann and G. Chevreau for technical support; H. Köver, G. Tkačik, N. Barton, A. Angermayr and B. Kavčič for support during laboratory relocation; D. Siekhaus, M. Springer and all the members of the Bollenbach group for support and discussions; and K. Mitosch, M. Lukačišinová, G. Liti and A. de Luna for critical reading of our manuscript. This work was supported in part by an Austrian Science Fund (FWF) standalone grant P 27201-B22 (to T.B.), HFSP program Grant RGP0042/2013 (to T.B.), EU Marie Curie Career Integration Grant No. 303507, and German Research Foundation (DFG) Collaborative Research Centre (SFB) 1310 (to T.B.). A.E.-C. was supported by a Georg Forster fellowship from the Alexander von Humboldt Foundation.","status":"public","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","date_published":"2022-05-05T00:00:00Z","file":[{"relation":"main_file","creator":"dernst","file_id":"11727","date_updated":"2022-08-05T06:08:24Z","content_type":"application/pdf","access_level":"open_access","date_created":"2022-08-05T06:08:24Z","checksum":"d68cd1596bb9fd819b750fe47c8a138a","file_size":25360311,"success":1,"file_name":"2022_Nature_Lukacisin.pdf"}],"volume":605,"external_id":{"isi":["000784934100003"],"pmid":["35444278"]},"author":[{"full_name":"Lukacisin, Martin","orcid":"0000-0001-6549-4177","last_name":"Lukacisin","id":"298FFE8C-F248-11E8-B48F-1D18A9856A87","first_name":"Martin"},{"full_name":"Espinosa-Cantú, Adriana","last_name":"Espinosa-Cantú","first_name":"Adriana"},{"orcid":"0000-0003-4398-476X","full_name":"Bollenbach, Mark Tobias","id":"3E6DB97A-F248-11E8-B48F-1D18A9856A87","last_name":"Bollenbach","first_name":"Mark Tobias"}],"page":"113-118","language":[{"iso":"eng"}],"publication":"Nature","year":"2022","date_created":"2022-05-01T22:01:42Z","citation":{"ama":"Lukacisin M, Espinosa-Cantú A, Bollenbach MT. Intron-mediated induction of phenotypic heterogeneity. <i>Nature</i>. 2022;605:113-118. doi:<a href=\"https://doi.org/10.1038/s41586-022-04633-0\">10.1038/s41586-022-04633-0</a>","ieee":"M. Lukacisin, A. Espinosa-Cantú, and M. T. Bollenbach, “Intron-mediated induction of phenotypic heterogeneity,” <i>Nature</i>, vol. 605. Springer Nature, pp. 113–118, 2022.","short":"M. Lukacisin, A. Espinosa-Cantú, M.T. Bollenbach, Nature 605 (2022) 113–118.","apa":"Lukacisin, M., Espinosa-Cantú, A., &#38; Bollenbach, M. T. (2022). Intron-mediated induction of phenotypic heterogeneity. <i>Nature</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41586-022-04633-0\">https://doi.org/10.1038/s41586-022-04633-0</a>","chicago":"Lukacisin, Martin, Adriana Espinosa-Cantú, and Mark Tobias Bollenbach. “Intron-Mediated Induction of Phenotypic Heterogeneity.” <i>Nature</i>. Springer Nature, 2022. <a href=\"https://doi.org/10.1038/s41586-022-04633-0\">https://doi.org/10.1038/s41586-022-04633-0</a>.","mla":"Lukacisin, Martin, et al. “Intron-Mediated Induction of Phenotypic Heterogeneity.” <i>Nature</i>, vol. 605, Springer Nature, 2022, pp. 113–18, doi:<a href=\"https://doi.org/10.1038/s41586-022-04633-0\">10.1038/s41586-022-04633-0</a>.","ista":"Lukacisin M, Espinosa-Cantú A, Bollenbach MT. 2022. Intron-mediated induction of phenotypic heterogeneity. Nature. 605, 113–118."},"quality_controlled":"1","scopus_import":"1","day":"05","intvolume":"       605","doi":"10.1038/s41586-022-04633-0","abstract":[{"text":"Intragenic regions that are removed during maturation of the RNA transcript—introns—are universally present in the nuclear genomes of eukaryotes1. The budding yeast, an otherwise intron-poor species, preserves two sets of ribosomal protein genes that differ primarily in their introns2,3. Although studies have shed light on the role of ribosomal protein introns under stress and starvation4,5,6, understanding the contribution of introns to ribosome regulation remains challenging. Here, by combining isogrowth profiling7 with single-cell protein measurements8, we show that introns can mediate inducible phenotypic heterogeneity that confers a clear fitness advantage. Osmotic stress leads to bimodal expression of the small ribosomal subunit protein Rps22B, which is mediated by an intron in the 5′ untranslated region of its transcript. The two resulting yeast subpopulations differ in their ability to cope with starvation. Low levels of Rps22B protein result in prolonged survival under sustained starvation, whereas high levels of Rps22B enable cells to grow faster after transient starvation. Furthermore, yeasts growing at high concentrations of sugar, similar to those in ripe grapes, exhibit bimodal expression of Rps22B when approaching the stationary phase. Differential intron-mediated regulation of ribosomal protein genes thus provides a way to diversify the population when starvation threatens in natural environments. Our findings reveal a role for introns in inducing phenotypic heterogeneity in changing environments, and suggest that duplicated ribosomal protein genes in yeast contribute to resolving the evolutionary conflict between precise expression control and environmental responsiveness9.","lang":"eng"}],"ddc":["570"],"oa":1,"file_date_updated":"2022-08-05T06:08:24Z","article_processing_charge":"No","has_accepted_license":"1"},{"abstract":[{"text":"Multistable systems are characterized by exhibiting domain coexistence, where each domain accounts for the different equilibrium states. In case these systems are described by vectorial fields, domains can be connected through topological defects. Vortices are one of the most frequent and studied topological defect points. Optical vortices are equally relevant for their fundamental features as beams with topological features and their applications in image processing, telecommunications, optical tweezers, and quantum information. A natural source of optical vortices is the interaction of light beams with matter vortices in liquid crystal cells. The rhythms that govern the emergence of matter vortices due to fluctuations are not established. Here, we investigate the nucleation mechanisms of the matter vortices in liquid crystal cells and establish statistical laws that govern them. Based on a stochastic amplitude equation, the law for the number of nucleated vortices as a function of anisotropy, voltage, and noise level intensity is set. Experimental observations in a nematic liquid crystal cell with homeotropic anchoring and a negative anisotropic dielectric constant under the influence of a transversal electric field show a qualitative agreement with the theoretical findings.","lang":"eng"}],"ddc":["530"],"file_date_updated":"2022-08-05T06:13:19Z","oa":1,"article_processing_charge":"Yes (via OA deal)","has_accepted_license":"1","scopus_import":"1","quality_controlled":"1","citation":{"ista":"Aguilera E, Clerc MG, Zambra V. 2022. Vortices nucleation by inherent fluctuations in nematic liquid crystal cells. Nonlinear Dynamics. 108, 3209–3218.","mla":"Aguilera, Esteban, et al. “Vortices Nucleation by Inherent Fluctuations in Nematic Liquid Crystal Cells.” <i>Nonlinear Dynamics</i>, vol. 108, Springer Nature, 2022, pp. 3209–18, doi:<a href=\"https://doi.org/10.1007/s11071-022-07396-5\">10.1007/s11071-022-07396-5</a>.","apa":"Aguilera, E., Clerc, M. G., &#38; Zambra, V. (2022). Vortices nucleation by inherent fluctuations in nematic liquid crystal cells. <i>Nonlinear Dynamics</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s11071-022-07396-5\">https://doi.org/10.1007/s11071-022-07396-5</a>","chicago":"Aguilera, Esteban, Marcel G. Clerc, and Valeska Zambra. “Vortices Nucleation by Inherent Fluctuations in Nematic Liquid Crystal Cells.” <i>Nonlinear Dynamics</i>. Springer Nature, 2022. <a href=\"https://doi.org/10.1007/s11071-022-07396-5\">https://doi.org/10.1007/s11071-022-07396-5</a>.","short":"E. Aguilera, M.G. Clerc, V. Zambra, Nonlinear Dynamics 108 (2022) 3209–3218.","ieee":"E. Aguilera, M. G. Clerc, and V. Zambra, “Vortices nucleation by inherent fluctuations in nematic liquid crystal cells,” <i>Nonlinear Dynamics</i>, vol. 108. Springer Nature, pp. 3209–3218, 2022.","ama":"Aguilera E, Clerc MG, Zambra V. Vortices nucleation by inherent fluctuations in nematic liquid crystal cells. <i>Nonlinear Dynamics</i>. 2022;108:3209-3218. doi:<a href=\"https://doi.org/10.1007/s11071-022-07396-5\">10.1007/s11071-022-07396-5</a>"},"date_created":"2022-05-02T07:01:59Z","day":"01","corr_author":"1","intvolume":"       108","doi":"10.1007/s11071-022-07396-5","publication":"Nonlinear Dynamics","page":"3209-3218","language":[{"iso":"eng"}],"year":"2022","acknowledgement":"The authors thank Enrique Calisto,Michal Kowalczyk, and Michel Ferre for fructified discussions. This work was funded by ANID—Millennium Science Initiative Program—ICN17_012. MGC is thankful for financial support from the Fondecyt 1210353 project.\r\nOpen access funding provided by Institute of Science and Technology (IST Austria).","status":"public","date_published":"2022-06-01T00:00:00Z","file":[{"checksum":"7d80cdece4e1b1c2106e6772a9622f60","date_created":"2022-08-05T06:13:19Z","content_type":"application/pdf","access_level":"open_access","file_name":"2022_NonlinearDyn_Aguilera.pdf","success":1,"file_size":1416049,"file_id":"11728","creator":"dernst","relation":"main_file","date_updated":"2022-08-05T06:13:19Z"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","external_id":{"isi":["000784871800001"]},"author":[{"first_name":"Esteban","full_name":"Aguilera, Esteban","last_name":"Aguilera"},{"first_name":"Marcel G.","last_name":"Clerc","full_name":"Clerc, Marcel G."},{"last_name":"Zambra","id":"467ed36b-dc96-11ea-b7c8-b043a380b282","full_name":"Zambra, Valeska","first_name":"Valeska"}],"volume":108,"department":[{"_id":"KiMo"}],"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"title":"Vortices nucleation by inherent fluctuations in nematic liquid crystal cells","date_updated":"2024-10-09T21:02:21Z","isi":1,"publication_identifier":{"issn":["0924-090X"],"eissn":["1573-269X"]},"_id":"11343","publisher":"Springer Nature","type":"journal_article","publication_status":"published","oa_version":"Published Version","keyword":["Electrical and Electronic Engineering","Applied Mathematics","Mechanical Engineering","Ocean Engineering","Aerospace Engineering","Control and Systems Engineering"],"month":"06","article_type":"original"},{"year":"2022","issue":"11","language":[{"iso":"eng"}],"publication":"Current Biology","page":"P2375-2389","volume":32,"author":[{"first_name":"William J.","last_name":"Nicolas","full_name":"Nicolas, William J."},{"first_name":"Florian","last_name":"Fäßler","id":"404F5528-F248-11E8-B48F-1D18A9856A87","full_name":"Fäßler, Florian","orcid":"0000-0001-7149-769X"},{"first_name":"Przemysław","last_name":"Dutka","full_name":"Dutka, Przemysław"},{"first_name":"Florian KM","last_name":"Schur","id":"48AD8942-F248-11E8-B48F-1D18A9856A87","full_name":"Schur, Florian KM","orcid":"0000-0003-4790-8078"},{"first_name":"Grant","full_name":"Jensen, Grant","last_name":"Jensen"},{"full_name":"Meyerowitz, Elliot","last_name":"Meyerowitz","first_name":"Elliot"}],"external_id":{"pmid":["35508170"],"isi":["000822399200019"]},"file":[{"date_updated":"2022-08-05T06:29:18Z","relation":"main_file","creator":"dernst","file_id":"11730","file_size":12827717,"file_name":"2022_CurrentBiology_Nicolas.pdf","success":1,"access_level":"open_access","content_type":"application/pdf","date_created":"2022-08-05T06:29:18Z","checksum":"af3f24d97c016d844df237abef987639"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","date_published":"2022-06-06T00:00:00Z","acknowledgement":"This work was supported by the Howard Hughes Medical Institute (HHMI) and grant R35 GM122588 to G.J. and the Austrian Science Fund (FWF) P33367 to F.K.M.S. We thank Noé Cochetel for his guidance and great help in data analysis, discovery, and representation with the R software. We thank Hans-Ulrich Endress for graciously providing us with the purified citrus pectin and Jozef Mravec for generating and providing the COS488 probe. Cryo-EM work was done in the Beckman Institute Resource Center for Transmission Electron Microscopy at Caltech. This article is subject to HHMI’s Open Access to Publications policy. HHMI lab heads have previously granted a nonexclusive CC BY 4.0 license to the public and a sublicensable license to HHMI in their research articles. Pursuant to those licenses, the author accepted manuscript of this article can be made freely available under a CC BY 4.0 license immediately upon publication.","status":"public","has_accepted_license":"1","article_processing_charge":"No","oa":1,"file_date_updated":"2022-08-05T06:29:18Z","abstract":[{"text":"One hallmark of plant cells is their cell wall. They protect cells against the environment and high turgor and mediate morphogenesis through the dynamics of their mechanical and chemical properties. The walls are a complex polysaccharidic structure. Although their biochemical composition is well known, how the different components organize in the volume of the cell wall and interact with each other is not well understood and yet is key to the wall’s mechanical properties. To investigate the ultrastructure of the plant cell wall, we imaged the walls of onion (Allium cepa) bulbs in a near-native state via cryo-focused ion beam milling (cryo-FIB milling) and cryo-electron tomography (cryo-ET). This allowed the high-resolution visualization of cellulose fibers in situ. We reveal the coexistence of dense fiber fields bathed in a reticulated matrix we termed “meshing,” which is more abundant at the inner surface of the cell wall. The fibers adopted a regular bimodal angular distribution at all depths in the cell wall and bundled according to their orientation, creating layers within the cell wall. Concomitantly, employing homogalacturonan (HG)-specific enzymatic digestion, we observed changes in the meshing, suggesting that it is—at least in part—composed of HG pectins. We propose the following model for the construction of the abaxial epidermal primary cell wall: the cell deposits successive layers of cellulose fibers at −45° and +45° relative to the cell’s long axis and secretes the surrounding HG-rich meshing proximal to the plasma membrane, which then migrates to more distal regions of the cell wall.","lang":"eng"}],"ddc":["570"],"doi":"10.1016/j.cub.2022.04.024","intvolume":"        32","day":"06","citation":{"mla":"Nicolas, William J., et al. “Cryo-Electron Tomography of the Onion Cell Wall Shows Bimodally Oriented Cellulose Fibers and Reticulated Homogalacturonan Networks.” <i>Current Biology</i>, vol. 32, no. 11, Elsevier, 2022, pp. P2375-2389, doi:<a href=\"https://doi.org/10.1016/j.cub.2022.04.024\">10.1016/j.cub.2022.04.024</a>.","apa":"Nicolas, W. J., Fäßler, F., Dutka, P., Schur, F. K., Jensen, G., &#38; Meyerowitz, E. (2022). Cryo-electron tomography of the onion cell wall shows bimodally oriented cellulose fibers and reticulated homogalacturonan networks. <i>Current Biology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.cub.2022.04.024\">https://doi.org/10.1016/j.cub.2022.04.024</a>","chicago":"Nicolas, William J., Florian Fäßler, Przemysław Dutka, Florian KM Schur, Grant Jensen, and Elliot Meyerowitz. “Cryo-Electron Tomography of the Onion Cell Wall Shows Bimodally Oriented Cellulose Fibers and Reticulated Homogalacturonan Networks.” <i>Current Biology</i>. Elsevier, 2022. <a href=\"https://doi.org/10.1016/j.cub.2022.04.024\">https://doi.org/10.1016/j.cub.2022.04.024</a>.","ista":"Nicolas WJ, Fäßler F, Dutka P, Schur FK, Jensen G, Meyerowitz E. 2022. Cryo-electron tomography of the onion cell wall shows bimodally oriented cellulose fibers and reticulated homogalacturonan networks. Current Biology. 32(11), P2375-2389.","ieee":"W. J. Nicolas, F. Fäßler, P. Dutka, F. K. Schur, G. Jensen, and E. Meyerowitz, “Cryo-electron tomography of the onion cell wall shows bimodally oriented cellulose fibers and reticulated homogalacturonan networks,” <i>Current Biology</i>, vol. 32, no. 11. Elsevier, pp. P2375-2389, 2022.","short":"W.J. Nicolas, F. Fäßler, P. Dutka, F.K. Schur, G. Jensen, E. Meyerowitz, Current Biology 32 (2022) P2375-2389.","ama":"Nicolas WJ, Fäßler F, Dutka P, Schur FK, Jensen G, Meyerowitz E. Cryo-electron tomography of the onion cell wall shows bimodally oriented cellulose fibers and reticulated homogalacturonan networks. <i>Current Biology</i>. 2022;32(11):P2375-2389. doi:<a href=\"https://doi.org/10.1016/j.cub.2022.04.024\">10.1016/j.cub.2022.04.024</a>"},"quality_controlled":"1","date_created":"2022-05-04T06:22:06Z","scopus_import":"1","oa_version":"Published Version","type":"journal_article","publisher":"Elsevier","publication_status":"published","article_type":"original","project":[{"_id":"9B954C5C-BA93-11EA-9121-9846C619BF3A","grant_number":"P33367","name":"Structure and isoform diversity of the Arp2/3 complex"}],"month":"06","keyword":["General Agricultural and Biological Sciences","General Biochemistry","Genetics and Molecular Biology"],"date_updated":"2025-04-15T08:25:40Z","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"title":"Cryo-electron tomography of the onion cell wall shows bimodally oriented cellulose fibers and reticulated homogalacturonan networks","department":[{"_id":"FlSc"}],"pmid":1,"_id":"11351","publication_identifier":{"issn":["0960-9822"]},"isi":1},{"arxiv":1,"publisher":"Institute of Mathematical Statistics","publication_status":"published","type":"journal_article","oa_version":"Preprint","main_file_link":[{"url":" https://doi.org/10.48550/arXiv.1811.11598","open_access":"1"}],"month":"03","project":[{"_id":"256E75B8-B435-11E9-9278-68D0E5697425","name":"Optimal Transport and Stochastic Dynamics","call_identifier":"H2020","grant_number":"716117"},{"_id":"fc31cba2-9c52-11eb-aca3-ff467d239cd2","name":"Taming Complexity in Partial Differential Systems","grant_number":"F6504"}],"article_type":"original","title":"The Dirichlet–Ferguson diffusion on the space of probability measures over a closed Riemannian manifold","department":[{"_id":"JaMa"}],"date_updated":"2025-04-14T07:27:47Z","isi":1,"publication_identifier":{"issn":["0091-1798"],"eissn":["2168-894X"]},"_id":"11354","ec_funded":1,"publication":"Annals of Probability","language":[{"iso":"eng"}],"page":"591-648","issue":"2","year":"2022","status":"public","acknowledgement":"Research supported by the Sonderforschungsbereich 1060 and the Hausdorff Center for Mathematics. The author gratefully acknowledges funding of his current position at IST Austria by the Austrian Science Fund (FWF) grant F65 and by the European Research Council (ERC, Grant agreement No. 716117, awarded to Prof. Dr. Jan Maas).","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_published":"2022-03-01T00:00:00Z","volume":50,"author":[{"first_name":"Lorenzo","id":"ECEBF480-9E4F-11EA-B557-B0823DDC885E","last_name":"Dello Schiavo","full_name":"Dello Schiavo, Lorenzo","orcid":"0000-0002-9881-6870"}],"external_id":{"arxiv":["1811.11598"],"isi":["000773518500005"]},"abstract":[{"lang":"eng","text":"We construct a recurrent diffusion process with values in the space of probability measures over an arbitrary closed Riemannian manifold of dimension d≥2. The process is associated with the Dirichlet form defined by integration of the Wasserstein gradient w.r.t. the Dirichlet–Ferguson measure, and is the counterpart on multidimensional base spaces to the modified massive Arratia flow over the unit interval described in V. Konarovskyi and M.-K. von Renesse (Comm. Pure Appl. Math. 72 (2019) 764–800). Together with two different constructions of the process, we discuss its ergodicity, invariant sets, finite-dimensional approximations, and Varadhan short-time asymptotics."}],"oa":1,"article_processing_charge":"No","quality_controlled":"1","date_created":"2022-05-08T22:01:44Z","citation":{"ama":"Dello Schiavo L. The Dirichlet–Ferguson diffusion on the space of probability measures over a closed Riemannian manifold. <i>Annals of Probability</i>. 2022;50(2):591-648. doi:<a href=\"https://doi.org/10.1214/21-AOP1541\">10.1214/21-AOP1541</a>","short":"L. Dello Schiavo, Annals of Probability 50 (2022) 591–648.","ieee":"L. Dello Schiavo, “The Dirichlet–Ferguson diffusion on the space of probability measures over a closed Riemannian manifold,” <i>Annals of Probability</i>, vol. 50, no. 2. Institute of Mathematical Statistics, pp. 591–648, 2022.","ista":"Dello Schiavo L. 2022. The Dirichlet–Ferguson diffusion on the space of probability measures over a closed Riemannian manifold. Annals of Probability. 50(2), 591–648.","chicago":"Dello Schiavo, Lorenzo. “The Dirichlet–Ferguson Diffusion on the Space of Probability Measures over a Closed Riemannian Manifold.” <i>Annals of Probability</i>. Institute of Mathematical Statistics, 2022. <a href=\"https://doi.org/10.1214/21-AOP1541\">https://doi.org/10.1214/21-AOP1541</a>.","apa":"Dello Schiavo, L. (2022). The Dirichlet–Ferguson diffusion on the space of probability measures over a closed Riemannian manifold. <i>Annals of Probability</i>. Institute of Mathematical Statistics. <a href=\"https://doi.org/10.1214/21-AOP1541\">https://doi.org/10.1214/21-AOP1541</a>","mla":"Dello Schiavo, Lorenzo. “The Dirichlet–Ferguson Diffusion on the Space of Probability Measures over a Closed Riemannian Manifold.” <i>Annals of Probability</i>, vol. 50, no. 2, Institute of Mathematical Statistics, 2022, pp. 591–648, doi:<a href=\"https://doi.org/10.1214/21-AOP1541\">10.1214/21-AOP1541</a>."},"scopus_import":"1","day":"01","corr_author":"1","intvolume":"        50","doi":"10.1214/21-AOP1541"},{"month":"03","project":[{"grant_number":"101020093","call_identifier":"H2020","name":"Vigilant Algorithmic Monitoring of Software","_id":"62781420-2b32-11ec-9570-8d9b63373d4d"}],"publisher":"Springer Nature","publication_status":"published","type":"conference","oa_version":"Published Version","_id":"11355","ec_funded":1,"isi":1,"publication_identifier":{"issn":["0302-9743"],"isbn":["9783030994280"],"eissn":["1611-3349"]},"date_updated":"2025-12-30T06:50:51Z","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"department":[{"_id":"ToHe"}],"title":"Information-flow interfaces","file":[{"file_name":"2022_LNCS_Bartocci.pdf","success":1,"file_size":479146,"checksum":"7f6f860b20b8de2a249e9c1b4eee15cf","access_level":"open_access","content_type":"application/pdf","date_created":"2022-05-09T06:52:44Z","date_updated":"2022-05-09T06:52:44Z","creator":"dernst","file_id":"11357","relation":"main_file"}],"date_published":"2022-03-29T00:00:00Z","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","volume":13241,"author":[{"first_name":"Ezio","full_name":"Bartocci, Ezio","last_name":"Bartocci"},{"first_name":"Thomas","last_name":"Ferrere","id":"40960E6E-F248-11E8-B48F-1D18A9856A87","full_name":"Ferrere, Thomas","orcid":"0000-0001-5199-3143"},{"last_name":"Henzinger","id":"40876CD8-F248-11E8-B48F-1D18A9856A87","full_name":"Henzinger, Thomas A","orcid":"0000-0002-2985-7724","first_name":"Thomas A"},{"first_name":"Dejan","full_name":"Nickovic, Dejan","id":"41BCEE5C-F248-11E8-B48F-1D18A9856A87","last_name":"Nickovic"},{"first_name":"Ana Oliveira","last_name":"Da Costa","full_name":"Da Costa, Ana Oliveira"}],"external_id":{"isi":["000782393600001"]},"acknowledgement":"This project has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No 956123 and was funded in part by the FWF project W1255-N23 and by the ERC-2020-AdG 101020093.","status":"public","year":"2022","language":[{"iso":"eng"}],"publication":"Fundamental Approaches to Software Engineering","page":"3-22","related_material":{"record":[{"id":"17094","relation":"extended_version","status":"public"}]},"intvolume":"     13241","doi":"10.1007/978-3-030-99429-7_1","citation":{"chicago":"Bartocci, Ezio, Thomas Ferrere, Thomas A Henzinger, Dejan Nickovic, and Ana Oliveira Da Costa. “Information-Flow Interfaces.” In <i>Fundamental Approaches to Software Engineering</i>, 13241:3–22. Springer Nature, 2022. <a href=\"https://doi.org/10.1007/978-3-030-99429-7_1\">https://doi.org/10.1007/978-3-030-99429-7_1</a>.","apa":"Bartocci, E., Ferrere, T., Henzinger, T. A., Nickovic, D., &#38; Da Costa, A. O. (2022). Information-flow interfaces. In <i>Fundamental Approaches to Software Engineering</i> (Vol. 13241, pp. 3–22). Munich, Germany: Springer Nature. <a href=\"https://doi.org/10.1007/978-3-030-99429-7_1\">https://doi.org/10.1007/978-3-030-99429-7_1</a>","mla":"Bartocci, Ezio, et al. “Information-Flow Interfaces.” <i>Fundamental Approaches to Software Engineering</i>, vol. 13241, Springer Nature, 2022, pp. 3–22, doi:<a href=\"https://doi.org/10.1007/978-3-030-99429-7_1\">10.1007/978-3-030-99429-7_1</a>.","ista":"Bartocci E, Ferrere T, Henzinger TA, Nickovic D, Da Costa AO. 2022. Information-flow interfaces. Fundamental Approaches to Software Engineering. FASE: Fundamental Approaches to Software Engineering, LNCS, vol. 13241, 3–22.","ama":"Bartocci E, Ferrere T, Henzinger TA, Nickovic D, Da Costa AO. Information-flow interfaces. In: <i>Fundamental Approaches to Software Engineering</i>. Vol 13241. Springer Nature; 2022:3-22. doi:<a href=\"https://doi.org/10.1007/978-3-030-99429-7_1\">10.1007/978-3-030-99429-7_1</a>","short":"E. Bartocci, T. Ferrere, T.A. Henzinger, D. Nickovic, A.O. Da Costa, in:, Fundamental Approaches to Software Engineering, Springer Nature, 2022, pp. 3–22.","ieee":"E. Bartocci, T. Ferrere, T. A. Henzinger, D. Nickovic, and A. O. Da Costa, “Information-flow interfaces,” in <i>Fundamental Approaches to Software Engineering</i>, Munich, Germany, 2022, vol. 13241, pp. 3–22."},"date_created":"2022-05-08T22:01:44Z","quality_controlled":"1","scopus_import":"1","day":"29","alternative_title":["LNCS"],"conference":{"end_date":"2022-04-07","name":"FASE: Fundamental Approaches to Software Engineering","location":"Munich, Germany","start_date":"2022-04-02"},"article_processing_charge":"No","has_accepted_license":"1","ddc":["000"],"abstract":[{"lang":"eng","text":"Contract-based design is a promising methodology for taming the complexity of developing sophisticated systems. A formal contract distinguishes between assumptions, which are constraints that the designer of a component puts on the environments in which the component can be used safely, and guarantees, which are promises that the designer asks from the team that implements the component. A theory of formal contracts can be formalized as an interface theory, which supports the composition and refinement of both assumptions and guarantees.\r\nAlthough there is a rich landscape of contract-based design methods that address functional and extra-functional properties, we present the first interface theory that is designed for ensuring system-wide security properties. Our framework provides a refinement relation and a composition operation that support both incremental design and independent implementability. We develop our theory for both stateless and stateful interfaces. We illustrate the applicability of our framework with an example inspired from the automotive domain."}],"oa":1,"file_date_updated":"2022-05-09T06:52:44Z"},{"date_updated":"2025-06-11T13:47:08Z","title":"Spontaneous gully-polarized quantum hall states in ABA trilayer graphene","department":[{"_id":"MaSe"}],"pmid":1,"_id":"11379","publication_identifier":{"issn":["1530-6984"],"eissn":["1530-6992"]},"isi":1,"oa_version":"Preprint","publisher":"American Chemical Society","publication_status":"published","type":"journal_article","arxiv":1,"article_type":"original","month":"04","main_file_link":[{"open_access":"1","url":" https://doi.org/10.48550/arXiv.2109.00556"}],"article_processing_charge":"No","oa":1,"abstract":[{"text":"Bernal-stacked multilayer graphene is a versatile platform to explore quantum transport phenomena and interaction physics due to its exceptional tunability via electrostatic gating. For instance, upon applying a perpendicular electric field, its band structure exhibits several off-center Dirac points (so-called Dirac gullies) in each valley. Here, the formation of Dirac gullies and the interaction-induced breakdown of gully coherence is explored via magnetotransport measurements in high-quality Bernal-stacked (ABA) trilayer graphene. At zero magnetic field, multiple Lifshitz transitions indicating the formation of Dirac gullies are identified. In the quantum Hall regime, the emergence of Dirac gullies is evident as an increase in Landau level degeneracy. When tuning both electric and magnetic fields, electron–electron interactions can be controllably enhanced until, beyond critical electric and magnetic fields, the gully degeneracy is eventually lifted. The arising correlated ground state is consistent with a previously predicted nematic phase that spontaneously breaks the rotational gully symmetry.","lang":"eng"}],"doi":"10.1021/acs.nanolett.2c00435","intvolume":"        22","day":"27","quality_controlled":"1","date_created":"2022-05-15T22:01:41Z","citation":{"mla":"Winterer, Felix, et al. “Spontaneous Gully-Polarized Quantum Hall States in ABA Trilayer Graphene.” <i>Nano Letters</i>, vol. 22, no. 8, American Chemical Society, 2022, pp. 3317–22, doi:<a href=\"https://doi.org/10.1021/acs.nanolett.2c00435\">10.1021/acs.nanolett.2c00435</a>.","chicago":"Winterer, Felix, Anna M. Seiler, Areg Ghazaryan, Fabian R. Geisenhof, Kenji Watanabe, Takashi Taniguchi, Maksym Serbyn, and R. Thomas Weitz. “Spontaneous Gully-Polarized Quantum Hall States in ABA Trilayer Graphene.” <i>Nano Letters</i>. American Chemical Society, 2022. <a href=\"https://doi.org/10.1021/acs.nanolett.2c00435\">https://doi.org/10.1021/acs.nanolett.2c00435</a>.","apa":"Winterer, F., Seiler, A. M., Ghazaryan, A., Geisenhof, F. R., Watanabe, K., Taniguchi, T., … Weitz, R. T. (2022). Spontaneous gully-polarized quantum hall states in ABA trilayer graphene. <i>Nano Letters</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/acs.nanolett.2c00435\">https://doi.org/10.1021/acs.nanolett.2c00435</a>","ista":"Winterer F, Seiler AM, Ghazaryan A, Geisenhof FR, Watanabe K, Taniguchi T, Serbyn M, Weitz RT. 2022. Spontaneous gully-polarized quantum hall states in ABA trilayer graphene. Nano Letters. 22(8), 3317–3322.","short":"F. Winterer, A.M. Seiler, A. Ghazaryan, F.R. Geisenhof, K. Watanabe, T. Taniguchi, M. Serbyn, R.T. Weitz, Nano Letters 22 (2022) 3317–3322.","ieee":"F. Winterer <i>et al.</i>, “Spontaneous gully-polarized quantum hall states in ABA trilayer graphene,” <i>Nano Letters</i>, vol. 22, no. 8. American Chemical Society, pp. 3317–3322, 2022.","ama":"Winterer F, Seiler AM, Ghazaryan A, et al. Spontaneous gully-polarized quantum hall states in ABA trilayer graphene. <i>Nano Letters</i>. 2022;22(8):3317-3322. doi:<a href=\"https://doi.org/10.1021/acs.nanolett.2c00435\">10.1021/acs.nanolett.2c00435</a>"},"scopus_import":"1","year":"2022","issue":"8","page":"3317-3322","language":[{"iso":"eng"}],"publication":"Nano Letters","volume":22,"external_id":{"pmid":["35405074"],"isi":["000809056900019"],"arxiv":["2109.00556"]},"author":[{"last_name":"Winterer","full_name":"Winterer, Felix","first_name":"Felix"},{"first_name":"Anna M.","full_name":"Seiler, Anna M.","last_name":"Seiler"},{"first_name":"Areg","orcid":"0000-0001-9666-3543","full_name":"Ghazaryan, Areg","id":"4AF46FD6-F248-11E8-B48F-1D18A9856A87","last_name":"Ghazaryan"},{"first_name":"Fabian R.","last_name":"Geisenhof","full_name":"Geisenhof, Fabian R."},{"first_name":"Kenji","full_name":"Watanabe, Kenji","last_name":"Watanabe"},{"first_name":"Takashi","full_name":"Taniguchi, Takashi","last_name":"Taniguchi"},{"first_name":"Maksym","orcid":"0000-0002-2399-5827","full_name":"Serbyn, Maksym","last_name":"Serbyn","id":"47809E7E-F248-11E8-B48F-1D18A9856A87"},{"first_name":"R. Thomas","last_name":"Weitz","full_name":"Weitz, R. Thomas"}],"date_published":"2022-04-27T00:00:00Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","acknowledgement":"We acknowledge funding from the Center for Nanoscience (CeNS) and by the Deutsche\r\nForschungsgemeinschaft (DFG, German Research Foundation) under Germany’s Excellence Strategy-EXC-2111-390814868 (MCQST). K.W. and T.T. acknowledge support from the Elemental Strategy Initiative conducted by the MEXT, Japan (Grant Number PMXP0112101001) and JSPS KAKENHI (Grant Numbers 19H05790 and JP20H00354).","status":"public"}]