[{"fulldoi":"https://doi.org/10.1103/physrevb.106.054314","intvolume":"       106","acknowledgement":"M.L. and T.P. acknowledge support from the European Research Council (ERC) through the advanced grant 694544 – OMNES and the grant P1-0402 of Slovenian Research Agency (ARRS). M.L. acknowledges support from the European Research Council (ERC) through the starting grant 850899 – NEQuM. D.R. acknowledges support from the Ministry of Electronics & Information Technology (MeitY), India under the grant for “Centre for Excellence in Quantum\r\nTechnologies” with Ref. No. 4(7)/2020-ITEA. ","volume":106,"doi":"10.1103/physrevb.106.054314","publication_identifier":{"eissn":["2469-9969"],"issn":["2469-9950"]},"language":[{"iso":"eng"}],"isi":1,"abstract":[{"text":"We study the thermalization of a small XX chain coupled to long, gapped XXZ leads at either side by observing the relaxation dynamics of the whole system. Using extensive tensor network simulations, we show that such systems, although not integrable, appear to show either extremely slow thermalization or even lack thereof since the two cannot be distinguished within the accuracy of our numerics. We show that the persistent oscillations observed in the spin current in the middle of the XX chain are related to eigenstates of the entire system located within the gap of the boundary chains. We find from exact diagonalization that some of these states remain strictly localized within the XX chain and do not hybridize with the rest of the system. The frequencies of the persistent oscillations determined by numerical simulations of dynamics match the energy differences between these states exactly. This has important implications for open systems, where the strongly interacting leads are often assumed to thermalize the central system. Our results suggest that, if we employ gapped systems for the leads, this assumption does not hold.","lang":"eng"}],"status":"public","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2106.08373"}],"day":"31","external_id":{"isi":["000861332900005"],"arxiv":["2106.08373"]},"oa_version":"Preprint","issue":"5","citation":{"ieee":"M. Ljubotina, D. Roy, and T. Prosen, “Absence of thermalization of free systems coupled to gapped interacting reservoirs,” <i>Physical Review B</i>, vol. 106, no. 5. American Physical Society, 2022.","ama":"Ljubotina M, Roy D, Prosen T. Absence of thermalization of free systems coupled to gapped interacting reservoirs. <i>Physical Review B</i>. 2022;106(5). doi:<a href=\"https://doi.org/10.1103/physrevb.106.054314\">10.1103/physrevb.106.054314</a>","short":"M. Ljubotina, D. Roy, T. Prosen, Physical Review B 106 (2022).","chicago":"Ljubotina, Marko, Dibyendu Roy, and Tomaž Prosen. “Absence of Thermalization of Free Systems Coupled to Gapped Interacting Reservoirs.” <i>Physical Review B</i>. American Physical Society, 2022. <a href=\"https://doi.org/10.1103/physrevb.106.054314\">https://doi.org/10.1103/physrevb.106.054314</a>.","mla":"Ljubotina, Marko, et al. “Absence of Thermalization of Free Systems Coupled to Gapped Interacting Reservoirs.” <i>Physical Review B</i>, vol. 106, no. 5, 054314, American Physical Society, 2022, doi:<a href=\"https://doi.org/10.1103/physrevb.106.054314\">10.1103/physrevb.106.054314</a>.","ista":"Ljubotina M, Roy D, Prosen T. 2022. Absence of thermalization of free systems coupled to gapped interacting reservoirs. Physical Review B. 106(5), 054314.","apa":"Ljubotina, M., Roy, D., &#38; Prosen, T. (2022). Absence of thermalization of free systems coupled to gapped interacting reservoirs. <i>Physical Review B</i>. American Physical Society. <a href=\"https://doi.org/10.1103/physrevb.106.054314\">https://doi.org/10.1103/physrevb.106.054314</a>"},"arxiv":1,"date_created":"2023-01-16T10:00:39Z","article_type":"original","title":"Absence of thermalization of free systems coupled to gapped interacting reservoirs","article_processing_charge":"No","month":"08","date_updated":"2025-04-14T07:52:06Z","publication":"Physical Review B","author":[{"first_name":"Marko","last_name":"Ljubotina","orcid":"0000-0003-0038-7068","full_name":"Ljubotina, Marko","id":"F75EE9BE-5C90-11EA-905D-16643DDC885E"},{"first_name":"Dibyendu","last_name":"Roy","full_name":"Roy, Dibyendu"},{"full_name":"Prosen, Tomaž","last_name":"Prosen","first_name":"Tomaž"}],"date_published":"2022-08-31T00:00:00Z","_id":"12269","ec_funded":1,"department":[{"_id":"MaSe"}],"project":[{"name":"Non-Ergodic Quantum Matter: Universality, Dynamics and Control","call_identifier":"H2020","_id":"23841C26-32DE-11EA-91FC-C7463DDC885E","grant_number":"850899"}],"year":"2022","scopus_import":"1","type":"journal_article","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","publisher":"American Physical Society","publication_status":"published","article_number":"054314","oa":1,"quality_controlled":"1"},{"publication_identifier":{"eissn":["1476-4687"],"issn":["0028-0836"]},"doi":"10.1038/s41586-022-04962-0","abstract":[{"text":"The morphology and functionality of the epithelial lining differ along the intestinal tract, but tissue renewal at all sites is driven by stem cells at the base of crypts1,2,3. Whether stem cell numbers and behaviour vary at different sites is unknown. Here we show using intravital microscopy that, despite similarities in the number and distribution of proliferative cells with an Lgr5 signature in mice, small intestinal crypts contain twice as many effective stem cells as large intestinal crypts. We find that, although passively displaced by a conveyor-belt-like upward movement, small intestinal cells positioned away from the crypt base can function as long-term effective stem cells owing to Wnt-dependent retrograde cellular movement. By contrast, the near absence of retrograde movement in the large intestine restricts cell repositioning, leading to a reduction in effective stem cell number. Moreover, after suppression of the retrograde movement in the small intestine, the number of effective stem cells is reduced, and the rate of monoclonal conversion of crypts is accelerated. Together, these results show that the number of effective stem cells is determined by active retrograde movement, revealing a new channel of stem cell regulation that can be experimentally and pharmacologically manipulated.","lang":"eng"}],"isi":1,"language":[{"iso":"eng"}],"acknowledgement":"We thank the members of the van Rheenen laboratory for reading the manuscript, and the members of the bioimaging, FACS and animal facility of the NKI for experimental support. We acknowledge the staff at the MedH Flow Cytometry core facility, Karolinska Institutet, and LCI facility/Nikon Center of Excellence, Karolinska Institutet. This work was financially supported by the Netherlands Organization of Scientific Research NWO (Veni grant 863.15.011 to S.I.J.E. and Vici grant 09150182110004 to J.v.R.) and the CancerGenomics.nl (Netherlands Organisation for Scientific Research) program (to J.v.R.) the Doctor Josef Steiner Foundation (to J.v.R). B.D.S. acknowledges funding from the Royal Society E.P. Abraham Research Professorship (RP\\R1\\180165) and the Wellcome Trust (098357/Z/12/Z and 219478/Z/19/Z). B.C.-M. acknowledges the support of the field of excellence ‘Complexity of life in basic research and innovation’ of the University of Graz. O.J.S. and their laboratory acknowledge CRUK core funding to the CRUK Beatson Institute (A17196 and A31287) and CRUK core funding to the Sansom laboratory (A21139). P.K. and their laboratory are supported by grants from the Swedish Research Council (2018-03078), Cancerfonden (190634), Academy of Finland Centre of Excellence (266869, 304591 and 320185) and the Jane and Aatos Erkko Foundation. P.L. has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (grant agreement no. 758617). E.H. acknowledges funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (grant agreement no. 851288).","intvolume":"       607","related_material":{"link":[{"url":"https://github.com/JaccovanRheenenLab/Retrograde_movement_Azkanaz_Nature_2022","relation":"software"}]},"fulldoi":"https://doi.org/10.1038/s41586-022-04962-0","volume":607,"oa_version":"Submitted Version","keyword":["Multidisciplinary"],"external_id":{"isi":["000824430000004"],"pmid":["35831497"]},"day":"13","main_file_link":[{"open_access":"1","url":"https://helda.helsinki.fi/items/94433455-4854-45c0-9de8-7326caea8780"}],"citation":{"mla":"Azkanaz, Maria, et al. “Retrograde Movements Determine Effective Stem Cell Numbers in the Intestine.” <i>Nature</i>, vol. 607, no. 7919, Springer Nature, 2022, pp. 548–54, doi:<a href=\"https://doi.org/10.1038/s41586-022-04962-0\">10.1038/s41586-022-04962-0</a>.","short":"M. Azkanaz, B. Corominas-Murtra, S.I.J. Ellenbroek, L. Bruens, A.T. Webb, D. Laskaris, K.C. Oost, S.J.A. Lafirenze, K. Annusver, H.A. Messal, S. Iqbal, D.J. Flanagan, D.J. Huels, F. Rojas-Rodríguez, M. Vizoso, M. Kasper, O.J. Sansom, H.J. Snippert, P. Liberali, B.D. Simons, P. Katajisto, E.B. Hannezo, J. van Rheenen, Nature 607 (2022) 548–554.","ama":"Azkanaz M, Corominas-Murtra B, Ellenbroek SIJ, et al. Retrograde movements determine effective stem cell numbers in the intestine. <i>Nature</i>. 2022;607(7919):548-554. doi:<a href=\"https://doi.org/10.1038/s41586-022-04962-0\">10.1038/s41586-022-04962-0</a>","chicago":"Azkanaz, Maria, Bernat Corominas-Murtra, Saskia I. J. Ellenbroek, Lotte Bruens, Anna T. Webb, Dimitrios Laskaris, Koen C. Oost, et al. “Retrograde Movements Determine Effective Stem Cell Numbers in the Intestine.” <i>Nature</i>. Springer Nature, 2022. <a href=\"https://doi.org/10.1038/s41586-022-04962-0\">https://doi.org/10.1038/s41586-022-04962-0</a>.","ieee":"M. Azkanaz <i>et al.</i>, “Retrograde movements determine effective stem cell numbers in the intestine,” <i>Nature</i>, vol. 607, no. 7919. Springer Nature, pp. 548–554, 2022.","apa":"Azkanaz, M., Corominas-Murtra, B., Ellenbroek, S. I. J., Bruens, L., Webb, A. T., Laskaris, D., … van Rheenen, J. (2022). Retrograde movements determine effective stem cell numbers in the intestine. <i>Nature</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41586-022-04962-0\">https://doi.org/10.1038/s41586-022-04962-0</a>","ista":"Azkanaz M, Corominas-Murtra B, Ellenbroek SIJ, Bruens L, Webb AT, Laskaris D, Oost KC, Lafirenze SJA, Annusver K, Messal HA, Iqbal S, Flanagan DJ, Huels DJ, Rojas-Rodríguez F, Vizoso M, Kasper M, Sansom OJ, Snippert HJ, Liberali P, Simons BD, Katajisto P, Hannezo EB, van Rheenen J. 2022. Retrograde movements determine effective stem cell numbers in the intestine. Nature. 607(7919), 548–554."},"issue":"7919","status":"public","date_published":"2022-07-13T00:00:00Z","author":[{"first_name":"Maria","last_name":"Azkanaz","full_name":"Azkanaz, Maria"},{"id":"43BE2298-F248-11E8-B48F-1D18A9856A87","full_name":"Corominas-Murtra, Bernat","last_name":"Corominas-Murtra","orcid":"0000-0001-9806-5643","first_name":"Bernat"},{"last_name":"Ellenbroek","first_name":"Saskia I. J.","full_name":"Ellenbroek, Saskia I. J."},{"full_name":"Bruens, Lotte","last_name":"Bruens","first_name":"Lotte"},{"last_name":"Webb","first_name":"Anna T.","full_name":"Webb, Anna T."},{"full_name":"Laskaris, Dimitrios","last_name":"Laskaris","first_name":"Dimitrios"},{"last_name":"Oost","first_name":"Koen C.","full_name":"Oost, Koen C."},{"full_name":"Lafirenze, Simona J. A.","last_name":"Lafirenze","first_name":"Simona J. A."},{"first_name":"Karl","last_name":"Annusver","full_name":"Annusver, Karl"},{"last_name":"Messal","first_name":"Hendrik A.","full_name":"Messal, Hendrik A."},{"first_name":"Sharif","last_name":"Iqbal","full_name":"Iqbal, Sharif"},{"full_name":"Flanagan, Dustin J.","first_name":"Dustin J.","last_name":"Flanagan"},{"first_name":"David J.","last_name":"Huels","full_name":"Huels, David J."},{"full_name":"Rojas-Rodríguez, Felipe","last_name":"Rojas-Rodríguez","first_name":"Felipe"},{"full_name":"Vizoso, Miguel","last_name":"Vizoso","first_name":"Miguel"},{"full_name":"Kasper, Maria","first_name":"Maria","last_name":"Kasper"},{"first_name":"Owen J.","last_name":"Sansom","full_name":"Sansom, Owen J."},{"full_name":"Snippert, Hugo J.","last_name":"Snippert","first_name":"Hugo J."},{"first_name":"Prisca","last_name":"Liberali","full_name":"Liberali, Prisca"},{"full_name":"Simons, Benjamin D.","first_name":"Benjamin D.","last_name":"Simons"},{"last_name":"Katajisto","first_name":"Pekka","full_name":"Katajisto, Pekka"},{"id":"3A9DB764-F248-11E8-B48F-1D18A9856A87","full_name":"Hannezo, Edouard B","orcid":"0000-0001-6005-1561","last_name":"Hannezo","first_name":"Edouard B"},{"first_name":"Jacco","last_name":"van Rheenen","full_name":"van Rheenen, Jacco"}],"publication":"Nature","ec_funded":1,"_id":"12274","article_type":"original","title":"Retrograde movements determine effective stem cell numbers in the intestine","date_created":"2023-01-16T10:01:29Z","month":"07","date_updated":"2025-04-14T07:52:27Z","article_processing_charge":"No","publication_status":"published","publisher":"Springer Nature","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","page":"548-554","quality_controlled":"1","oa":1,"pmid":1,"corr_author":"1","type":"journal_article","scopus_import":"1","year":"2022","project":[{"grant_number":"851288","_id":"05943252-7A3F-11EA-A408-12923DDC885E","call_identifier":"H2020","name":"Design Principles of Branching Morphogenesis"}],"department":[{"_id":"EdHa"}]},{"citation":{"mla":"Rahman, Maisha, et al. “Specific N-Glycans Regulate an Extracellular Adhesion Complex during Somatosensory Dendrite Patterning.” <i>EMBO Reports</i>, vol. 23, no. 7, e54163, Embo Press, 2022, doi:<a href=\"https://doi.org/10.15252/embr.202154163\">10.15252/embr.202154163</a>.","ieee":"M. Rahman, N. Ramirez, C. A. Diaz‐Balzac, and H. E. Bülow, “Specific N-glycans regulate an extracellular adhesion complex during somatosensory dendrite patterning,” <i>EMBO Reports</i>, vol. 23, no. 7. Embo Press, 2022.","ama":"Rahman M, Ramirez N, Diaz‐Balzac CA, Bülow HE. Specific N-glycans regulate an extracellular adhesion complex during somatosensory dendrite patterning. <i>EMBO Reports</i>. 2022;23(7). doi:<a href=\"https://doi.org/10.15252/embr.202154163\">10.15252/embr.202154163</a>","short":"M. Rahman, N. Ramirez, C.A. Diaz‐Balzac, H.E. Bülow, EMBO Reports 23 (2022).","chicago":"Rahman, Maisha, Nelson Ramirez, Carlos A Diaz‐Balzac, and Hannes E Bülow. “Specific N-Glycans Regulate an Extracellular Adhesion Complex during Somatosensory Dendrite Patterning.” <i>EMBO Reports</i>. Embo Press, 2022. <a href=\"https://doi.org/10.15252/embr.202154163\">https://doi.org/10.15252/embr.202154163</a>.","apa":"Rahman, M., Ramirez, N., Diaz‐Balzac, C. A., &#38; Bülow, H. E. (2022). Specific N-glycans regulate an extracellular adhesion complex during somatosensory dendrite patterning. <i>EMBO Reports</i>. Embo Press. <a href=\"https://doi.org/10.15252/embr.202154163\">https://doi.org/10.15252/embr.202154163</a>","ista":"Rahman M, Ramirez N, Diaz‐Balzac CA, Bülow HE. 2022. Specific N-glycans regulate an extracellular adhesion complex during somatosensory dendrite patterning. EMBO Reports. 23(7), e54163."},"issue":"7","external_id":{"pmid":["35586945"],"isi":["000797302700001"]},"keyword":["Genetics","Molecular Biology","Biochemistry"],"oa_version":"Published Version","main_file_link":[{"open_access":"1","url":"https://doi.org/10.15252/embr.202154163"}],"day":"05","has_accepted_license":"1","status":"public","isi":1,"abstract":[{"text":"N-glycans are molecularly diverse sugars borne by over 70% of proteins transiting the secretory pathway and have been implicated in protein folding, stability, and localization. Mutations in genes important for N-glycosylation result in congenital disorders of glycosylation that are often associated with intellectual disability. Here, we show that structurally distinct N-glycans regulate an extracellular protein complex involved in the patterning of somatosensory dendrites in Caenorhabditis elegans. Specifically, aman-2/Golgi alpha-mannosidase II, a conserved key enzyme in the biosynthesis of specific N-glycans, regulates the activity of the Menorin adhesion complex without obviously affecting the protein stability and localization of its components. AMAN-2 functions cell-autonomously to allow for decoration of the neuronal transmembrane receptor DMA-1/LRR-TM with the correct set of high-mannose/hybrid/paucimannose N-glycans. Moreover, distinct types of N-glycans on specific N-glycosylation sites regulate DMA-1/LRR-TM receptor function, which, together with three other extracellular proteins, forms the Menorin adhesion complex. In summary, specific N-glycan structures regulate dendrite patterning by coordinating the activity of an extracellular adhesion complex, suggesting that the molecular diversity of N-glycans can contribute to developmental specificity in the nervous system.","lang":"eng"}],"language":[{"iso":"eng"}],"publication_identifier":{"eissn":["1469-3178"],"issn":["1469-221X"]},"doi":"10.15252/embr.202154163","ddc":["570"],"volume":23,"intvolume":"        23","acknowledgement":"We thank Scott Garforth, Sarah Garrett, Peri Kurshan, Yehuda Salzberg, PamelaStanley, Robert Townley, and members of the B€ulow laboratory for commentson the manuscript or helpful discussions during the course of this work. Wethank David Miller, Shohei Mitani, Kang Shen, and Iain Wilson for reagents,and Yuji Kohara for theyk11g705cDNA clone. We are grateful to MeeraTrivedi for sharing thedzIs117strain prior to publication. Some strains wereprovided by the Caenorhabditis Genome Center (funded by the NIH Office ofResearch Infrastructure Programs P40OD010440). This work was supportedby grants from the National Institute of Health (NIH): R01NS096672andR21NS111145to HEB; F31NS100370to MR; T32GM007288and F31HD066967to CADB; P30HD071593to Albert Einstein College of Medicine. We acknowl-edge support to MR by the Department of Neuroscience. NJRS was the recipi-ent of a Colciencias-Fulbright Fellowship and HEB of an Irma T. Hirschl/Monique Weill-Caulier research fellowship","fulldoi":"https://doi.org/10.15252/embr.202154163","article_number":"e54163","quality_controlled":"1","oa":1,"publisher":"Embo Press","publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","scopus_import":"1","type":"journal_article","year":"2022","department":[{"_id":"MaDe"}],"pmid":1,"_id":"12275","author":[{"last_name":"Rahman","first_name":"Maisha","full_name":"Rahman, Maisha"},{"id":"39831956-E4FE-11E9-85DE-0DC7E5697425","full_name":"Ramirez, Nelson","last_name":"Ramirez","first_name":"Nelson"},{"first_name":"Carlos A","last_name":"Diaz‐Balzac","full_name":"Diaz‐Balzac, Carlos A"},{"full_name":"Bülow, Hannes E","last_name":"Bülow","first_name":"Hannes E"}],"date_published":"2022-07-05T00:00:00Z","publication":"EMBO Reports","month":"07","date_updated":"2026-06-18T17:26:25Z","article_processing_charge":"No","article_type":"original","title":"Specific N-glycans regulate an extracellular adhesion complex during somatosensory dendrite patterning","date_created":"2023-01-16T10:01:44Z"},{"author":[{"full_name":"Ljubotina, Marko","id":"F75EE9BE-5C90-11EA-905D-16643DDC885E","first_name":"Marko","orcid":"0000-0003-0038-7068","last_name":"Ljubotina"},{"id":"5DA90512-D80F-11E9-8994-2E2EE6697425","full_name":"Roos, Barbara","orcid":"0000-0002-9071-5880","last_name":"Roos","first_name":"Barbara"},{"full_name":"Abanin, Dmitry A.","last_name":"Abanin","first_name":"Dmitry A."},{"first_name":"Maksym","orcid":"0000-0002-2399-5827","last_name":"Serbyn","full_name":"Serbyn, Maksym","id":"47809E7E-F248-11E8-B48F-1D18A9856A87"}],"date_published":"2022-09-23T00:00:00Z","publication":"PRX Quantum","file":[{"content_type":"application/pdf","access_level":"open_access","relation":"main_file","checksum":"ef8f0a1b5a019b3958009162de0fa4c3","file_name":"2022_PRXQuantum_Ljubotina.pdf","creator":"dernst","date_updated":"2023-01-30T11:02:50Z","success":1,"file_id":"12457","date_created":"2023-01-30T11:02:50Z","file_size":7661905}],"_id":"12276","ec_funded":1,"article_type":"original","title":"Optimal steering of matrix product states and quantum many-body scars","arxiv":1,"date_created":"2023-01-16T10:01:56Z","date_updated":"2025-04-14T07:52:07Z","month":"09","article_processing_charge":"No","publisher":"American Physical Society","publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file_date_updated":"2023-01-30T11:02:50Z","quality_controlled":"1","oa":1,"article_number":"030343","year":"2022","type":"journal_article","scopus_import":"1","corr_author":"1","department":[{"_id":"MaSe"},{"_id":"RoSe"}],"project":[{"name":"Non-Ergodic Quantum Matter: Universality, Dynamics and Control","call_identifier":"H2020","_id":"23841C26-32DE-11EA-91FC-C7463DDC885E","grant_number":"850899"}],"publication_identifier":{"eissn":["2691-3399"]},"doi":"10.1103/prxquantum.3.030343","abstract":[{"text":"Ongoing development of quantum simulators allows for a progressively finer degree of control of quantum many-body systems. This motivates the development of efficient approaches to facilitate the control of such systems and enable the preparation of nontrivial quantum states. Here we formulate an approach to control quantum systems based on matrix product states (MPSs). We compare counterdiabatic and leakage minimization approaches to the so-called local steering problem that consists in finding the best value of the control parameters for generating a unitary evolution of the specific MPS in a given direction. In order to benchmark the different approaches, we apply them to the generalization of the PXP model known to exhibit coherent quantum dynamics due to quantum many-body scars. We find that the leakage-based approach generally outperforms the counterdiabatic framework and use it to construct a Floquet model with quantum scars. We perform the first steps towards global trajectory optimization and demonstrate entanglement steering capabilities in the generalized PXP model. Finally, we apply our leakage minimization approach to construct quantum scars in the periodically driven nonintegrable Ising model.","lang":"eng"}],"language":[{"iso":"eng"}],"intvolume":"         3","acknowledgement":"We thank A. A. Michailidis for insightful discussions. M.L. and M.S. acknowledge support from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (Grant Agreement No. 850899). D.A. is supported by the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (Grant Agreement No. 864597) and by the Swiss National Science Foundation. The infinite TEBD simulations were performed using the ITensor library [67].","fulldoi":"https://doi.org/10.1103/prxquantum.3.030343","ddc":["530"],"volume":3,"external_id":{"arxiv":["2204.02899"]},"keyword":["General Medicine"],"oa_version":"Published Version","day":"23","citation":{"ista":"Ljubotina M, Roos B, Abanin DA, Serbyn M. 2022. Optimal steering of matrix product states and quantum many-body scars. PRX Quantum. 3(3), 030343.","apa":"Ljubotina, M., Roos, B., Abanin, D. A., &#38; Serbyn, M. (2022). Optimal steering of matrix product states and quantum many-body scars. <i>PRX Quantum</i>. American Physical Society. <a href=\"https://doi.org/10.1103/prxquantum.3.030343\">https://doi.org/10.1103/prxquantum.3.030343</a>","chicago":"Ljubotina, Marko, Barbara Roos, Dmitry A. Abanin, and Maksym Serbyn. “Optimal Steering of Matrix Product States and Quantum Many-Body Scars.” <i>PRX Quantum</i>. American Physical Society, 2022. <a href=\"https://doi.org/10.1103/prxquantum.3.030343\">https://doi.org/10.1103/prxquantum.3.030343</a>.","ama":"Ljubotina M, Roos B, Abanin DA, Serbyn M. Optimal steering of matrix product states and quantum many-body scars. <i>PRX Quantum</i>. 2022;3(3). doi:<a href=\"https://doi.org/10.1103/prxquantum.3.030343\">10.1103/prxquantum.3.030343</a>","short":"M. Ljubotina, B. Roos, D.A. Abanin, M. Serbyn, PRX Quantum 3 (2022).","ieee":"M. Ljubotina, B. Roos, D. A. Abanin, and M. Serbyn, “Optimal steering of matrix product states and quantum many-body scars,” <i>PRX Quantum</i>, vol. 3, no. 3. American Physical Society, 2022.","mla":"Ljubotina, Marko, et al. “Optimal Steering of Matrix Product States and Quantum Many-Body Scars.” <i>PRX Quantum</i>, vol. 3, no. 3, 030343, American Physical Society, 2022, doi:<a href=\"https://doi.org/10.1103/prxquantum.3.030343\">10.1103/prxquantum.3.030343</a>."},"issue":"3","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"status":"public","has_accepted_license":"1"},{"fulldoi":"https://doi.org/10.1103/physrevx.12.031041","acknowledgement":"We thank Grzegorz Gradziuk, StevenRiedijk, Janni Harju, and M. R. Schnucki for helpful discussions, and Andriy Goychuk for advice on the image segmentation. This project\r\nwas funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation), Project No. 201269156—SFB 1032 (Projects B01 and B12). D. B. B. is supported by the NOMIS Foundation and in part by a DFG fellowship within the Graduate School of Quantitative Biosciences Munich (QBM), as well as by the Joachim Herz Stiftung.","intvolume":"        12","volume":12,"ddc":["530","570"],"doi":"10.1103/physrevx.12.031041","publication_identifier":{"issn":["2160-3308"]},"language":[{"iso":"eng"}],"abstract":[{"lang":"eng","text":"Cell migration in confining physiological environments relies on the concerted dynamics of several cellular components, including protrusions, adhesions with the environment, and the cell nucleus. However, it remains poorly understood how the dynamic interplay of these components and the cell polarity determine the emergent migration behavior at the cellular scale. Here, we combine data-driven inference with a mechanistic bottom-up approach to develop a model for protrusion and polarity dynamics in confined cell migration, revealing how the cellular dynamics adapt to confining geometries. Specifically, we use experimental data of joint protrusion-nucleus migration trajectories of cells on confining micropatterns to systematically determine a mechanistic model linking the stochastic dynamics of cell polarity, protrusions, and nucleus. This model indicates that the cellular dynamics adapt to confining constrictions through a switch in the polarity dynamics from a negative to a positive self-reinforcing feedback loop. Our model further reveals how this feedback loop leads to stereotypical cycles of protrusion-nucleus dynamics that drive the migration of the cell through constrictions. These cycles are disrupted upon perturbation of cytoskeletal components, indicating that the positive feedback is controlled by cellular migration mechanisms. Our data-driven theoretical approach therefore identifies polarity feedback adaptation as a key mechanism in confined cell migration."}],"isi":1,"status":"public","has_accepted_license":"1","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"day":"20","oa_version":"Published Version","external_id":{"isi":["000861534700001"],"arxiv":["2106.01014"]},"keyword":["General Physics and Astronomy"],"issue":"3","citation":{"apa":"Brückner, D., Schmitt, M., Fink, A., Ladurner, G., Flommersfeld, J., Arlt, N., … Broedersz, C. P. (2022). Geometry adaptation of protrusion and polarity dynamics in confined cell migration. <i>Physical Review X</i>. American Physical Society. <a href=\"https://doi.org/10.1103/physrevx.12.031041\">https://doi.org/10.1103/physrevx.12.031041</a>","ista":"Brückner D, Schmitt M, Fink A, Ladurner G, Flommersfeld J, Arlt N, Hannezo EB, Rädler JO, Broedersz CP. 2022. Geometry adaptation of protrusion and polarity dynamics in confined cell migration. Physical Review X. 12(3), 031041.","mla":"Brückner, David, et al. “Geometry Adaptation of Protrusion and Polarity Dynamics in Confined Cell Migration.” <i>Physical Review X</i>, vol. 12, no. 3, 031041, American Physical Society, 2022, doi:<a href=\"https://doi.org/10.1103/physrevx.12.031041\">10.1103/physrevx.12.031041</a>.","chicago":"Brückner, David, Matthew Schmitt, Alexandra Fink, Georg Ladurner, Johannes Flommersfeld, Nicolas Arlt, Edouard B Hannezo, Joachim O. Rädler, and Chase P. Broedersz. “Geometry Adaptation of Protrusion and Polarity Dynamics in Confined Cell Migration.” <i>Physical Review X</i>. American Physical Society, 2022. <a href=\"https://doi.org/10.1103/physrevx.12.031041\">https://doi.org/10.1103/physrevx.12.031041</a>.","ama":"Brückner D, Schmitt M, Fink A, et al. Geometry adaptation of protrusion and polarity dynamics in confined cell migration. <i>Physical Review X</i>. 2022;12(3). doi:<a href=\"https://doi.org/10.1103/physrevx.12.031041\">10.1103/physrevx.12.031041</a>","short":"D. Brückner, M. Schmitt, A. Fink, G. Ladurner, J. Flommersfeld, N. Arlt, E.B. Hannezo, J.O. Rädler, C.P. Broedersz, Physical Review X 12 (2022).","ieee":"D. Brückner <i>et al.</i>, “Geometry adaptation of protrusion and polarity dynamics in confined cell migration,” <i>Physical Review X</i>, vol. 12, no. 3. American Physical Society, 2022."},"date_created":"2023-01-16T10:02:06Z","arxiv":1,"title":"Geometry adaptation of protrusion and polarity dynamics in confined cell migration","article_type":"original","article_processing_charge":"No","date_updated":"2023-08-04T10:25:49Z","month":"09","file":[{"file_name":"2022_PhysicalReviewX_Brueckner.pdf","creator":"dernst","relation":"main_file","checksum":"40a8fbc3663bf07b37cb80020974d40d","access_level":"open_access","content_type":"application/pdf","file_size":4686804,"date_created":"2023-01-30T11:07:27Z","file_id":"12458","success":1,"date_updated":"2023-01-30T11:07:27Z"}],"publication":"Physical Review X","date_published":"2022-09-20T00:00:00Z","author":[{"id":"e1e86031-6537-11eb-953a-f7ab92be508d","full_name":"Brückner, David","last_name":"Brückner","orcid":"0000-0001-7205-2975","first_name":"David"},{"full_name":"Schmitt, Matthew","first_name":"Matthew","last_name":"Schmitt"},{"full_name":"Fink, Alexandra","first_name":"Alexandra","last_name":"Fink"},{"full_name":"Ladurner, Georg","first_name":"Georg","last_name":"Ladurner"},{"first_name":"Johannes","last_name":"Flommersfeld","full_name":"Flommersfeld, Johannes"},{"last_name":"Arlt","first_name":"Nicolas","full_name":"Arlt, Nicolas"},{"first_name":"Edouard B","orcid":"0000-0001-6005-1561","last_name":"Hannezo","full_name":"Hannezo, Edouard B","id":"3A9DB764-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Rädler, Joachim O.","first_name":"Joachim O.","last_name":"Rädler"},{"full_name":"Broedersz, Chase P.","last_name":"Broedersz","first_name":"Chase P."}],"_id":"12277","department":[{"_id":"EdHa"}],"type":"journal_article","scopus_import":"1","year":"2022","file_date_updated":"2023-01-30T11:07:27Z","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","publication_status":"published","publisher":"American Physical Society","quality_controlled":"1","oa":1,"article_number":"031041"},{"title":"Band structure near the Dirac Point in HgTe quantum wells with critical thickness","article_type":"original","date_created":"2023-01-16T10:02:31Z","month":"07","date_updated":"2025-06-11T13:45:36Z","article_processing_charge":"Yes","author":[{"full_name":"Shuvaev, Alexey","first_name":"Alexey","last_name":"Shuvaev"},{"full_name":"Dziom, Uladzislau","id":"6A9A37C2-8C5C-11E9-AE53-F2FDE5697425","first_name":"Uladzislau","last_name":"Dziom","orcid":"0000-0002-1648-0999"},{"full_name":"Gospodarič, Jan","first_name":"Jan","last_name":"Gospodarič"},{"first_name":"Elena G.","last_name":"Novik","full_name":"Novik, Elena G."},{"full_name":"Dobretsova, Alena A.","first_name":"Alena A.","last_name":"Dobretsova"},{"full_name":"Mikhailov, Nikolay N.","first_name":"Nikolay N.","last_name":"Mikhailov"},{"full_name":"Kvon, Ze Don","last_name":"Kvon","first_name":"Ze Don"},{"full_name":"Pimenov, Andrei","first_name":"Andrei","last_name":"Pimenov"}],"date_published":"2022-07-20T00:00:00Z","file":[{"relation":"main_file","checksum":"efad6742f89f39a18bec63116dd689a0","file_name":"2022_Nanomaterials_Shuvaev.pdf","creator":"dernst","content_type":"application/pdf","access_level":"open_access","file_size":464840,"date_created":"2023-01-30T11:16:54Z","success":1,"file_id":"12459","date_updated":"2023-01-30T11:16:54Z"}],"publication":"Nanomaterials","_id":"12278","pmid":1,"type":"journal_article","scopus_import":"1","year":"2022","department":[{"_id":"ZhAl"}],"publisher":"MDPI","publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file_date_updated":"2023-01-30T11:16:54Z","article_number":"2492","oa":1,"quality_controlled":"1","acknowledgement":"This work was supported by the Austrian Science Funds (W1243, I 3456-N27, I 5539-N).\r\nOpen Access Funding by the Austrian Science Fund (FWF).","intvolume":"        12","fulldoi":"https://doi.org/10.3390/nano12142492","ddc":["530"],"volume":12,"publication_identifier":{"issn":["2079-4991"]},"doi":"10.3390/nano12142492","isi":1,"abstract":[{"text":"Mercury telluride (HgTe) thin films with a critical thickness of 6.5 nm are predicted to possess a gapless Dirac-like band structure. We report a comprehensive study on gated and optically doped samples by magnetooptical spectroscopy in the THz range. The quasi-classical analysis of the cyclotron resonance allowed the mapping of the band dispersion of Dirac charge carriers in a broad range of electron and hole doping. A smooth transition through the charge neutrality point between Dirac holes and electrons was observed. An additional peak coming from a second type of holes with an almost density-independent mass of around 0.04m0 was detected in the hole-doping range and attributed to an asymmetric spin splitting of the Dirac cone. Spectroscopic evidence for disorder-induced band energy fluctuations could not be detected in present cyclotron resonance experiments.","lang":"eng"}],"language":[{"iso":"eng"}],"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"status":"public","has_accepted_license":"1","keyword":["General Materials Science","General Chemical Engineering"],"external_id":{"isi":["000834401600001"],"pmid":["35889716"]},"oa_version":"Published Version","day":"20","citation":{"ista":"Shuvaev A, Dziom V, Gospodarič J, Novik EG, Dobretsova AA, Mikhailov NN, Kvon ZD, Pimenov A. 2022. Band structure near the Dirac Point in HgTe quantum wells with critical thickness. Nanomaterials. 12(14), 2492.","apa":"Shuvaev, A., Dziom, V., Gospodarič, J., Novik, E. G., Dobretsova, A. A., Mikhailov, N. N., … Pimenov, A. (2022). Band structure near the Dirac Point in HgTe quantum wells with critical thickness. <i>Nanomaterials</i>. MDPI. <a href=\"https://doi.org/10.3390/nano12142492\">https://doi.org/10.3390/nano12142492</a>","ieee":"A. Shuvaev <i>et al.</i>, “Band structure near the Dirac Point in HgTe quantum wells with critical thickness,” <i>Nanomaterials</i>, vol. 12, no. 14. MDPI, 2022.","chicago":"Shuvaev, Alexey, Vlad Dziom, Jan Gospodarič, Elena G. Novik, Alena A. Dobretsova, Nikolay N. Mikhailov, Ze Don Kvon, and Andrei Pimenov. “Band Structure near the Dirac Point in HgTe Quantum Wells with Critical Thickness.” <i>Nanomaterials</i>. MDPI, 2022. <a href=\"https://doi.org/10.3390/nano12142492\">https://doi.org/10.3390/nano12142492</a>.","ama":"Shuvaev A, Dziom V, Gospodarič J, et al. Band structure near the Dirac Point in HgTe quantum wells with critical thickness. <i>Nanomaterials</i>. 2022;12(14). doi:<a href=\"https://doi.org/10.3390/nano12142492\">10.3390/nano12142492</a>","short":"A. Shuvaev, V. Dziom, J. Gospodarič, E.G. Novik, A.A. Dobretsova, N.N. Mikhailov, Z.D. Kvon, A. Pimenov, Nanomaterials 12 (2022).","mla":"Shuvaev, Alexey, et al. “Band Structure near the Dirac Point in HgTe Quantum Wells with Critical Thickness.” <i>Nanomaterials</i>, vol. 12, no. 14, 2492, MDPI, 2022, doi:<a href=\"https://doi.org/10.3390/nano12142492\">10.3390/nano12142492</a>."},"issue":"14"},{"day":"03","main_file_link":[{"url":" https://doi.org/10.48550/arXiv.2205.12871","open_access":"1"}],"oa_version":"Preprint","external_id":{"isi":["000836397000001"],"arxiv":["2205.12871"]},"keyword":["Fluid Flow and Transfer Processes","Modeling and Simulation","Computational Mechanics"],"issue":"8","citation":{"apa":"Kumar, M. V., Varshney, A., Li, D., &#38; Steinberg, V. (2022). Relaminarization of elastic turbulence. <i>Physical Review Fluids</i>. American Physical Society. <a href=\"https://doi.org/10.1103/physrevfluids.7.l081301\">https://doi.org/10.1103/physrevfluids.7.l081301</a>","ista":"Kumar MV, Varshney A, Li D, Steinberg V. 2022. Relaminarization of elastic turbulence. Physical Review Fluids. 7(8), L081301.","mla":"Kumar, M. Vijay, et al. “Relaminarization of Elastic Turbulence.” <i>Physical Review Fluids</i>, vol. 7, no. 8, L081301, American Physical Society, 2022, doi:<a href=\"https://doi.org/10.1103/physrevfluids.7.l081301\">10.1103/physrevfluids.7.l081301</a>.","ieee":"M. V. Kumar, A. Varshney, D. Li, and V. Steinberg, “Relaminarization of elastic turbulence,” <i>Physical Review Fluids</i>, vol. 7, no. 8. American Physical Society, 2022.","short":"M.V. Kumar, A. Varshney, D. Li, V. Steinberg, Physical Review Fluids 7 (2022).","chicago":"Kumar, M. Vijay, Atul Varshney, Dongyang Li, and Victor Steinberg. “Relaminarization of Elastic Turbulence.” <i>Physical Review Fluids</i>. American Physical Society, 2022. <a href=\"https://doi.org/10.1103/physrevfluids.7.l081301\">https://doi.org/10.1103/physrevfluids.7.l081301</a>.","ama":"Kumar MV, Varshney A, Li D, Steinberg V. Relaminarization of elastic turbulence. <i>Physical Review Fluids</i>. 2022;7(8). doi:<a href=\"https://doi.org/10.1103/physrevfluids.7.l081301\">10.1103/physrevfluids.7.l081301</a>"},"status":"public","doi":"10.1103/physrevfluids.7.l081301","publication_identifier":{"issn":["2469-990X"]},"language":[{"iso":"eng"}],"abstract":[{"lang":"eng","text":"We report frictional drag reduction and a complete flow relaminarization of elastic turbulence (ET) at vanishing inertia in a viscoelastic channel flow past an obstacle. We show that the intensity of the observed elastic waves and wall-normal vorticity correlate well with the measured drag above the onset of ET. Moreover, we find that the elastic wave frequency grows with the Weissenberg number, and at sufficiently high frequency it causes a decay of the elastic waves, resulting in ET attenuation and drag reduction. Thus, this allows us to substantiate a physical mechanism, involving the interaction of elastic waves with wall-normal vorticity fluctuations, leading to the drag reduction and relaminarization phenomena at low Reynolds number."}],"isi":1,"fulldoi":"https://doi.org/10.1103/physrevfluids.7.l081301","acknowledgement":"We thank G. Falkovich for discussion and Guy Han for technical support. We are grateful to N. Jha for his help in µPIV measurements. This work is partially supported by the grants from\r\nIsrael Science Foundation (ISF; grant #882/15 and grant #784/19) and Binational USA-Israel Foundation (BSF;grant #2016145). ","intvolume":"         7","volume":7,"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","publication_status":"published","publisher":"American Physical Society","quality_controlled":"1","article_number":"L081301","oa":1,"department":[{"_id":"BjHo"}],"corr_author":"1","type":"journal_article","scopus_import":"1","year":"2022","publication":"Physical Review Fluids","date_published":"2022-08-03T00:00:00Z","author":[{"full_name":"Kumar, M. Vijay","first_name":"M. Vijay","last_name":"Kumar"},{"id":"2A2006B2-F248-11E8-B48F-1D18A9856A87","full_name":"Varshney, Atul","last_name":"Varshney","orcid":"0000-0002-3072-5999","first_name":"Atul"},{"full_name":"Li, Dongyang","last_name":"Li","first_name":"Dongyang"},{"full_name":"Steinberg, Victor","last_name":"Steinberg","first_name":"Victor"}],"_id":"12279","date_created":"2023-01-16T10:02:40Z","arxiv":1,"article_type":"original","title":"Relaminarization of elastic turbulence","article_processing_charge":"No","month":"08","date_updated":"2024-10-09T21:03:55Z"},{"pmid":1,"corr_author":"1","scopus_import":"1","type":"journal_article","year":"2022","project":[{"name":"Formal Methods for Stochastic Models: Algorithms and Applications","call_identifier":"H2020","grant_number":"863818","_id":"0599E47C-7A3F-11EA-A408-12923DDC885E"}],"department":[{"_id":"KrCh"}],"publication_status":"published","publisher":"Public Library of Science","file_date_updated":"2023-01-30T11:28:13Z","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","article_number":"e1010149","oa":1,"quality_controlled":"1","title":"Direct reciprocity between individuals that use different strategy spaces","article_type":"original","date_created":"2023-01-16T10:02:51Z","month":"06","date_updated":"2025-04-14T07:52:47Z","article_processing_charge":"No","date_published":"2022-06-14T00:00:00Z","author":[{"first_name":"Laura","last_name":"Schmid","orcid":"0000-0002-6978-7329","full_name":"Schmid, Laura","id":"38B437DE-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Hilbe","orcid":"0000-0001-5116-955X","first_name":"Christian","id":"2FDF8F3C-F248-11E8-B48F-1D18A9856A87","full_name":"Hilbe, Christian"},{"id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","full_name":"Chatterjee, Krishnendu","orcid":"0000-0002-4561-241X","last_name":"Chatterjee","first_name":"Krishnendu"},{"full_name":"Nowak, Martin","last_name":"Nowak","first_name":"Martin"}],"file":[{"creator":"dernst","file_name":"2022_PlosCompBio_Schmid.pdf","relation":"main_file","checksum":"31b6b311b6731f1658277a9dfff6632c","access_level":"open_access","content_type":"application/pdf","date_created":"2023-01-30T11:28:13Z","file_size":3143222,"date_updated":"2023-01-30T11:28:13Z","file_id":"12460","success":1}],"publication":"PLOS Computational Biology","ec_funded":1,"_id":"12280","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"status":"public","has_accepted_license":"1","oa_version":"Published Version","keyword":["Computational Theory and Mathematics","Cellular and Molecular Neuroscience","Genetics","Molecular Biology","Ecology","Modeling and Simulation","Ecology","Evolution","Behavior and Systematics"],"external_id":{"isi":["000843626800031"],"pmid":["35700167"]},"day":"14","citation":{"mla":"Schmid, Laura, et al. “Direct Reciprocity between Individuals That Use Different Strategy Spaces.” <i>PLOS Computational Biology</i>, vol. 18, no. 6, e1010149, Public Library of Science, 2022, doi:<a href=\"https://doi.org/10.1371/journal.pcbi.1010149\">10.1371/journal.pcbi.1010149</a>.","chicago":"Schmid, Laura, Christian Hilbe, Krishnendu Chatterjee, and Martin Nowak. “Direct Reciprocity between Individuals That Use Different Strategy Spaces.” <i>PLOS Computational Biology</i>. Public Library of Science, 2022. <a href=\"https://doi.org/10.1371/journal.pcbi.1010149\">https://doi.org/10.1371/journal.pcbi.1010149</a>.","short":"L. Schmid, C. Hilbe, K. Chatterjee, M. Nowak, PLOS Computational Biology 18 (2022).","ama":"Schmid L, Hilbe C, Chatterjee K, Nowak M. Direct reciprocity between individuals that use different strategy spaces. <i>PLOS Computational Biology</i>. 2022;18(6). doi:<a href=\"https://doi.org/10.1371/journal.pcbi.1010149\">10.1371/journal.pcbi.1010149</a>","ieee":"L. Schmid, C. Hilbe, K. Chatterjee, and M. Nowak, “Direct reciprocity between individuals that use different strategy spaces,” <i>PLOS Computational Biology</i>, vol. 18, no. 6. Public Library of Science, 2022.","apa":"Schmid, L., Hilbe, C., Chatterjee, K., &#38; Nowak, M. (2022). Direct reciprocity between individuals that use different strategy spaces. <i>PLOS Computational Biology</i>. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pcbi.1010149\">https://doi.org/10.1371/journal.pcbi.1010149</a>","ista":"Schmid L, Hilbe C, Chatterjee K, Nowak M. 2022. Direct reciprocity between individuals that use different strategy spaces. PLOS Computational Biology. 18(6), e1010149."},"issue":"6","intvolume":"        18","acknowledgement":"This work was supported by the European Research Council (https://erc.europa.eu/)\r\nCoG 863818 (ForM-SMArt) (to K.C.), and the European Research Council Starting Grant 850529: E-DIRECT (to C.H.). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.","fulldoi":"https://doi.org/10.1371/journal.pcbi.1010149","ddc":["000","570"],"volume":18,"publication_identifier":{"eissn":["1553-7358"]},"doi":"10.1371/journal.pcbi.1010149","abstract":[{"lang":"eng","text":"In repeated interactions, players can use strategies that respond to the outcome of previous rounds. Much of the existing literature on direct reciprocity assumes that all competing individuals use the same strategy space. Here, we study both learning and evolutionary dynamics of players that differ in the strategy space they explore. We focus on the infinitely repeated donation game and compare three natural strategy spaces: memory-1 strategies, which consider the last moves of both players, reactive strategies, which respond to the last move of the co-player, and unconditional strategies. These three strategy spaces differ in the memory capacity that is needed. We compute the long term average payoff that is achieved in a pairwise learning process. We find that smaller strategy spaces can dominate larger ones. For weak selection, unconditional players dominate both reactive and memory-1 players. For intermediate selection, reactive players dominate memory-1 players. Only for strong selection and low cost-to-benefit ratio, memory-1 players dominate the others. We observe that the supergame between strategy spaces can be a social dilemma: maximum payoff is achieved if both players explore a larger strategy space, but smaller strategy spaces dominate."}],"isi":1,"language":[{"iso":"eng"}]},{"month":"05","date_updated":"2025-04-14T07:44:00Z","article_processing_charge":"No","article_type":"original","title":"Symmetric inclusion process with slow boundary: Hydrodynamics and hydrostatics","date_created":"2023-01-16T10:03:04Z","arxiv":1,"ec_funded":1,"_id":"12281","date_published":"2022-05-01T00:00:00Z","author":[{"first_name":"Chiara","last_name":"Franceschini","full_name":"Franceschini, Chiara"},{"last_name":"Gonçalves","first_name":"Patrícia","full_name":"Gonçalves, Patrícia"},{"id":"E1836206-9F16-11E9-8814-AEFDE5697425","full_name":"Sau, Federico","last_name":"Sau","first_name":"Federico"}],"publication":"Bernoulli","scopus_import":"1","year":"2022","type":"journal_article","project":[{"name":"ISTplus - Postdoctoral Fellowships","call_identifier":"H2020","_id":"260C2330-B435-11E9-9278-68D0E5697425","grant_number":"754411"}],"department":[{"_id":"JaMa"}],"oa":1,"quality_controlled":"1","publication_status":"published","publisher":"Bernoulli Society for Mathematical Statistics and Probability","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","page":"1340-1381","volume":28,"acknowledgement":"C.F. and P.G. thank FCT/Portugal for support through the project UID/MAT/04459/2013.\r\nThis project has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovative programme (grant agreement No. 715734). F.S. was founded by the European Union’s Horizon 2020 research and innovation programme under the Marie-Skłodowska-Curie grant agreement No. 754411.\r\nF.S. wishes to thank Joe P. Chen for some fruitful discussions at an early stage of this work. F.S. thanks CAMGSD, IST, Lisbon, where part of this work has been done, and the European research and innovative programme No. 715734 for the kind hospitality.","intvolume":"        28","fulldoi":"https://doi.org/10.3150/21-bej1390","abstract":[{"lang":"eng","text":"We study the hydrodynamic and hydrostatic limits of the one-dimensional open symmetric inclusion process with slow boundary. Depending on the value of the parameter tuning the interaction rate of the bulk of the system with the boundary, we obtain a linear heat equation with either Dirichlet, Robin or Neumann boundary conditions as hydrodynamic equation. In our approach, we combine duality and first-second class particle techniques to reduce the scaling limit of the inclusion process to the limiting behavior of a single, non-interacting, particle."}],"isi":1,"language":[{"iso":"eng"}],"publication_identifier":{"issn":["1350-7265"]},"doi":"10.3150/21-bej1390","status":"public","citation":{"ieee":"C. Franceschini, P. Gonçalves, and F. Sau, “Symmetric inclusion process with slow boundary: Hydrodynamics and hydrostatics,” <i>Bernoulli</i>, vol. 28, no. 2. Bernoulli Society for Mathematical Statistics and Probability, pp. 1340–1381, 2022.","short":"C. Franceschini, P. Gonçalves, F. Sau, Bernoulli 28 (2022) 1340–1381.","ama":"Franceschini C, Gonçalves P, Sau F. Symmetric inclusion process with slow boundary: Hydrodynamics and hydrostatics. <i>Bernoulli</i>. 2022;28(2):1340-1381. doi:<a href=\"https://doi.org/10.3150/21-bej1390\">10.3150/21-bej1390</a>","chicago":"Franceschini, Chiara, Patrícia Gonçalves, and Federico Sau. “Symmetric Inclusion Process with Slow Boundary: Hydrodynamics and Hydrostatics.” <i>Bernoulli</i>. Bernoulli Society for Mathematical Statistics and Probability, 2022. <a href=\"https://doi.org/10.3150/21-bej1390\">https://doi.org/10.3150/21-bej1390</a>.","mla":"Franceschini, Chiara, et al. “Symmetric Inclusion Process with Slow Boundary: Hydrodynamics and Hydrostatics.” <i>Bernoulli</i>, vol. 28, no. 2, Bernoulli Society for Mathematical Statistics and Probability, 2022, pp. 1340–81, doi:<a href=\"https://doi.org/10.3150/21-bej1390\">10.3150/21-bej1390</a>.","ista":"Franceschini C, Gonçalves P, Sau F. 2022. Symmetric inclusion process with slow boundary: Hydrodynamics and hydrostatics. Bernoulli. 28(2), 1340–1381.","apa":"Franceschini, C., Gonçalves, P., &#38; Sau, F. (2022). Symmetric inclusion process with slow boundary: Hydrodynamics and hydrostatics. <i>Bernoulli</i>. Bernoulli Society for Mathematical Statistics and Probability. <a href=\"https://doi.org/10.3150/21-bej1390\">https://doi.org/10.3150/21-bej1390</a>"},"issue":"2","oa_version":"Preprint","keyword":["Statistics and Probability"],"external_id":{"isi":["000766619100025"],"arxiv":["2007.11998"]},"day":"01","main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2007.11998","open_access":"1"}]},{"article_number":"260017","quality_controlled":"1","publication_status":"published","publisher":"The Company of Biologists","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","corr_author":"1","year":"2022","scopus_import":"1","type":"journal_article","department":[{"_id":"SiHi"},{"_id":"LeSa"}],"pmid":1,"_id":"12282","date_published":"2022-04-19T00:00:00Z","author":[{"id":"4CD6AAC6-F248-11E8-B48F-1D18A9856A87","full_name":"Amberg, Nicole","orcid":"0000-0002-3183-8207","last_name":"Amberg","first_name":"Nicole"},{"last_name":"Stouffer","first_name":"Melissa A","id":"4C9372C4-F248-11E8-B48F-1D18A9856A87","full_name":"Stouffer, Melissa A"},{"first_name":"Irene","orcid":"0000-0001-5618-3449","last_name":"Vercellino","full_name":"Vercellino, Irene","id":"3ED6AF16-F248-11E8-B48F-1D18A9856A87"}],"publication":"Journal of Cell Science","date_updated":"2024-10-09T21:03:55Z","month":"04","article_processing_charge":"No","article_type":"letter_note","title":"Operation STEM fatale – how an equity, diversity and inclusion initiative has brought us to reflect on the current challenges in cell biology and science as a whole","date_created":"2023-01-16T10:03:14Z","citation":{"short":"N. Amberg, M.A. Stouffer, I. Vercellino, Journal of Cell Science 135 (2022).","chicago":"Amberg, Nicole, Melissa A Stouffer, and Irene Vercellino. “Operation STEM Fatale – How an Equity, Diversity and Inclusion Initiative Has Brought Us to Reflect on the Current Challenges in Cell Biology and Science as a Whole.” <i>Journal of Cell Science</i>. The Company of Biologists, 2022. <a href=\"https://doi.org/10.1242/jcs.260017\">https://doi.org/10.1242/jcs.260017</a>.","ama":"Amberg N, Stouffer MA, Vercellino I. Operation STEM fatale – how an equity, diversity and inclusion initiative has brought us to reflect on the current challenges in cell biology and science as a whole. <i>Journal of Cell Science</i>. 2022;135(8). doi:<a href=\"https://doi.org/10.1242/jcs.260017\">10.1242/jcs.260017</a>","ieee":"N. Amberg, M. A. Stouffer, and I. Vercellino, “Operation STEM fatale – how an equity, diversity and inclusion initiative has brought us to reflect on the current challenges in cell biology and science as a whole,” <i>Journal of Cell Science</i>, vol. 135, no. 8. The Company of Biologists, 2022.","mla":"Amberg, Nicole, et al. “Operation STEM Fatale – How an Equity, Diversity and Inclusion Initiative Has Brought Us to Reflect on the Current Challenges in Cell Biology and Science as a Whole.” <i>Journal of Cell Science</i>, vol. 135, no. 8, 260017, The Company of Biologists, 2022, doi:<a href=\"https://doi.org/10.1242/jcs.260017\">10.1242/jcs.260017</a>.","ista":"Amberg N, Stouffer MA, Vercellino I. 2022. Operation STEM fatale – how an equity, diversity and inclusion initiative has brought us to reflect on the current challenges in cell biology and science as a whole. Journal of Cell Science. 135(8), 260017.","apa":"Amberg, N., Stouffer, M. A., &#38; Vercellino, I. (2022). Operation STEM fatale – how an equity, diversity and inclusion initiative has brought us to reflect on the current challenges in cell biology and science as a whole. <i>Journal of Cell Science</i>. The Company of Biologists. <a href=\"https://doi.org/10.1242/jcs.260017\">https://doi.org/10.1242/jcs.260017</a>"},"issue":"8","oa_version":"None","external_id":{"isi":["000798123600015"],"pmid":["35438168"]},"day":"19","status":"public","abstract":[{"text":"From a simple thought to a multicellular movement","lang":"eng"}],"isi":1,"language":[{"iso":"eng"}],"publication_identifier":{"issn":["0021-9533"],"eissn":["1477-9137"]},"doi":"10.1242/jcs.260017","volume":135,"acknowledgement":"The authors want to thank Professors Carrie Bernecky, Tom Henzinger, Martin Loose and Gaia Novarino for accepting to be interviewed, thus giving significant contribution to the discussion that lead to this article.","intvolume":"       135","fulldoi":"https://doi.org/10.1242/jcs.260017"},{"_id":"12283","author":[{"full_name":"Atherton, Joseph","last_name":"Atherton","first_name":"Joseph"},{"first_name":"Melissa A","last_name":"Stouffer","full_name":"Stouffer, Melissa A","id":"4C9372C4-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Francis, Fiona","last_name":"Francis","first_name":"Fiona"},{"last_name":"Moores","first_name":"Carolyn A.","full_name":"Moores, Carolyn A."}],"date_published":"2022-04-01T00:00:00Z","file":[{"access_level":"open_access","content_type":"application/pdf","creator":"dernst","file_name":"2022_JourCellBiology_Atherton.pdf","relation":"main_file","checksum":"4346ed32cb7c89a8ca051c7da68a9a1c","date_updated":"2023-01-30T11:41:01Z","file_id":"12461","success":1,"file_size":13868733,"date_created":"2023-01-30T11:41:01Z"}],"publication":"Journal of Cell Science","month":"04","date_updated":"2023-08-04T10:28:34Z","article_processing_charge":"No","article_type":"original","title":"Visualising the cytoskeletal machinery in neuronal growth cones using cryo-electron tomography","date_created":"2023-01-16T10:03:24Z","article_number":"259234","quality_controlled":"1","oa":1,"publisher":"The Company of Biologists","publication_status":"published","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","file_date_updated":"2023-01-30T11:41:01Z","scopus_import":"1","type":"journal_article","year":"2022","department":[{"_id":"SiHi"}],"pmid":1,"isi":1,"abstract":[{"lang":"eng","text":"Neurons extend axons to form the complex circuitry of the mature brain. This depends on the coordinated response and continuous remodelling of the microtubule and F-actin networks in the axonal growth cone. Growth cone architecture remains poorly understood at nanoscales. We therefore investigated mouse hippocampal neuron growth cones using cryo-electron tomography to directly visualise their three-dimensional subcellular architecture with molecular detail. Our data showed that the hexagonal arrays of actin bundles that form filopodia penetrate and terminate deep within the growth cone interior. We directly observed the modulation of these and other growth cone actin bundles by alteration of individual F-actin helical structures. Microtubules with blunt, slightly flared or gently curved ends predominated in the growth cone, frequently contained lumenal particles and exhibited lattice defects. Investigation of the effect of absence of doublecortin, a neurodevelopmental cytoskeleton regulator, on growth cone cytoskeleton showed no major anomalies in overall growth cone organisation or in F-actin subpopulations. However, our data suggested that microtubules sustained more structural defects, highlighting the importance of microtubule integrity during growth cone migration."}],"language":[{"iso":"eng"}],"publication_identifier":{"eissn":["1477-9137"],"issn":["0021-9533"]},"doi":"10.1242/jcs.259234","ddc":["570"],"volume":135,"acknowledgement":"J.A. was supported by a grant from the Medical Research Council (MRC), UK (MR/R000352/1) to C.A.M. Cryo-EM data were collected on equipment funded by the Wellcome Trust, UK (079605/Z/06/Z) and the Biotechnology and Biological Sciences Research Council (BBSRC) UK (BB/L014211/1). F.F.’s salary and institute were supported by Inserm (Institut National de la Santé et de la Recherche Médicale), CNRS (Centre National de la Recherche Scientifique) and Sorbonne Université. F.F.’s group was particularly supported by Agence Nationale de la\r\nRecherche (ANR-16-CE16-0011-03) and Seventh Framework Programme (EUHEALTH-\r\n2013, DESIRE, N° 60253; also funding M.S.’s salary) and the European Cooperation in Science and Technology (COST Action CA16118). Open Access funding provided by Birkbeck College: Birkbeck University of London. Deposited in PMC for immediate release.","intvolume":"       135","fulldoi":"https://doi.org/10.1242/jcs.259234","citation":{"ista":"Atherton J, Stouffer MA, Francis F, Moores CA. 2022. Visualising the cytoskeletal machinery in neuronal growth cones using cryo-electron tomography. Journal of Cell Science. 135(7), 259234.","apa":"Atherton, J., Stouffer, M. A., Francis, F., &#38; Moores, C. A. (2022). Visualising the cytoskeletal machinery in neuronal growth cones using cryo-electron tomography. <i>Journal of Cell Science</i>. The Company of Biologists. <a href=\"https://doi.org/10.1242/jcs.259234\">https://doi.org/10.1242/jcs.259234</a>","ieee":"J. Atherton, M. A. Stouffer, F. Francis, and C. A. Moores, “Visualising the cytoskeletal machinery in neuronal growth cones using cryo-electron tomography,” <i>Journal of Cell Science</i>, vol. 135, no. 7. The Company of Biologists, 2022.","short":"J. Atherton, M.A. Stouffer, F. Francis, C.A. Moores, Journal of Cell Science 135 (2022).","ama":"Atherton J, Stouffer MA, Francis F, Moores CA. Visualising the cytoskeletal machinery in neuronal growth cones using cryo-electron tomography. <i>Journal of Cell Science</i>. 2022;135(7). doi:<a href=\"https://doi.org/10.1242/jcs.259234\">10.1242/jcs.259234</a>","chicago":"Atherton, Joseph, Melissa A Stouffer, Fiona Francis, and Carolyn A. Moores. “Visualising the Cytoskeletal Machinery in Neuronal Growth Cones Using Cryo-Electron Tomography.” <i>Journal of Cell Science</i>. The Company of Biologists, 2022. <a href=\"https://doi.org/10.1242/jcs.259234\">https://doi.org/10.1242/jcs.259234</a>.","mla":"Atherton, Joseph, et al. “Visualising the Cytoskeletal Machinery in Neuronal Growth Cones Using Cryo-Electron Tomography.” <i>Journal of Cell Science</i>, vol. 135, no. 7, 259234, The Company of Biologists, 2022, doi:<a href=\"https://doi.org/10.1242/jcs.259234\">10.1242/jcs.259234</a>."},"issue":"7","keyword":["Cell Biology"],"external_id":{"isi":["000783840400010"],"pmid":["35383828"]},"oa_version":"Published Version","day":"01","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"has_accepted_license":"1","status":"public"},{"article_number":"79848","oa":1,"quality_controlled":"1","publisher":"eLife Sciences Publications","publication_status":"published","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","file_date_updated":"2023-01-30T11:50:53Z","scopus_import":"1","type":"journal_article","year":"2022","corr_author":"1","department":[{"_id":"MaJö"},{"_id":"PeJo"}],"project":[{"grant_number":"692692","_id":"25B7EB9E-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","name":"Biophysics and circuit function of a giant cortical glutamatergic synapse"},{"name":"Circuits of Visual Attention","call_identifier":"H2020","grant_number":"756502","_id":"2634E9D2-B435-11E9-9278-68D0E5697425"},{"_id":"25C5A090-B435-11E9-9278-68D0E5697425","grant_number":"Z00312","name":"Synaptic communication in neuronal microcircuits","call_identifier":"FWF"},{"name":"Neuronal networks of salience and spatial detection in the murine superior colliculus","grant_number":"LT000256","_id":"266D407A-B435-11E9-9278-68D0E5697425"},{"name":"Connecting sensory with motor processing in the superior colliculus","_id":"264FEA02-B435-11E9-9278-68D0E5697425","grant_number":"ALTF 1098-2017"}],"pmid":1,"_id":"12288","ec_funded":1,"author":[{"full_name":"Sumser, Anton L","id":"3320A096-F248-11E8-B48F-1D18A9856A87","first_name":"Anton L","last_name":"Sumser","orcid":"0000-0002-4792-1881"},{"orcid":"0000-0002-3937-1330","last_name":"Jösch","first_name":"Maximilian A","id":"2BD278E6-F248-11E8-B48F-1D18A9856A87","full_name":"Jösch, Maximilian A"},{"id":"353C1B58-F248-11E8-B48F-1D18A9856A87","full_name":"Jonas, Peter M","last_name":"Jonas","orcid":"0000-0001-5001-4804","first_name":"Peter M"},{"id":"43DF3136-F248-11E8-B48F-1D18A9856A87","full_name":"Ben Simon, Yoav","last_name":"Ben Simon","first_name":"Yoav"}],"date_published":"2022-09-15T00:00:00Z","file":[{"relation":"main_file","checksum":"5a2a65e3e7225090c3d8199f3bbd7b7b","creator":"dernst","file_name":"2022_eLife_Sumser.pdf","content_type":"application/pdf","access_level":"open_access","date_created":"2023-01-30T11:50:53Z","file_size":8506811,"date_updated":"2023-01-30T11:50:53Z","success":1,"file_id":"12463"}],"publication":"eLife","month":"09","date_updated":"2025-04-15T08:29:05Z","article_processing_charge":"No","title":"Fast, high-throughput production of improved rabies viral vectors for specific, efficient and versatile transsynaptic retrograde labeling","article_type":"original","date_created":"2023-01-16T10:04:15Z","citation":{"chicago":"Sumser, Anton L, Maximilian A Jösch, Peter M Jonas, and Yoav Ben Simon. “Fast, High-Throughput Production of Improved Rabies Viral Vectors for Specific, Efficient and Versatile Transsynaptic Retrograde Labeling.” <i>ELife</i>. eLife Sciences Publications, 2022. <a href=\"https://doi.org/10.7554/elife.79848\">https://doi.org/10.7554/elife.79848</a>.","ama":"Sumser AL, Jösch MA, Jonas PM, Ben Simon Y. Fast, high-throughput production of improved rabies viral vectors for specific, efficient and versatile transsynaptic retrograde labeling. <i>eLife</i>. 2022;11. doi:<a href=\"https://doi.org/10.7554/elife.79848\">10.7554/elife.79848</a>","short":"A.L. Sumser, M.A. Jösch, P.M. Jonas, Y. Ben Simon, ELife 11 (2022).","ieee":"A. L. Sumser, M. A. Jösch, P. M. Jonas, and Y. Ben Simon, “Fast, high-throughput production of improved rabies viral vectors for specific, efficient and versatile transsynaptic retrograde labeling,” <i>eLife</i>, vol. 11. eLife Sciences Publications, 2022.","mla":"Sumser, Anton L., et al. “Fast, High-Throughput Production of Improved Rabies Viral Vectors for Specific, Efficient and Versatile Transsynaptic Retrograde Labeling.” <i>ELife</i>, vol. 11, 79848, eLife Sciences Publications, 2022, doi:<a href=\"https://doi.org/10.7554/elife.79848\">10.7554/elife.79848</a>.","ista":"Sumser AL, Jösch MA, Jonas PM, Ben Simon Y. 2022. Fast, high-throughput production of improved rabies viral vectors for specific, efficient and versatile transsynaptic retrograde labeling. eLife. 11, 79848.","apa":"Sumser, A. L., Jösch, M. A., Jonas, P. M., &#38; Ben Simon, Y. (2022). Fast, high-throughput production of improved rabies viral vectors for specific, efficient and versatile transsynaptic retrograde labeling. <i>ELife</i>. eLife Sciences Publications. <a href=\"https://doi.org/10.7554/elife.79848\">https://doi.org/10.7554/elife.79848</a>"},"keyword":["General Immunology and Microbiology","General Biochemistry","Genetics and Molecular Biology","General Medicine","General Neuroscience"],"external_id":{"isi":["000892204300001"],"pmid":["36040301"]},"oa_version":"Published Version","day":"15","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"has_accepted_license":"1","status":"public","isi":1,"abstract":[{"lang":"eng","text":"To understand the function of neuronal circuits, it is crucial to disentangle the connectivity patterns within the network. However, most tools currently used to explore connectivity have low throughput, low selectivity, or limited accessibility. Here, we report the development of an improved packaging system for the production of the highly neurotropic RVdGenvA-CVS-N2c rabies viral vectors, yielding titers orders of magnitude higher with no background contamination, at a fraction of the production time, while preserving the efficiency of transsynaptic labeling. Along with the production pipeline, we developed suites of ‘starter’ AAV and bicistronic RVdG-CVS-N2c vectors, enabling retrograde labeling from a wide range of neuronal populations, tailored for diverse experimental requirements. We demonstrate the power and flexibility of the new system by uncovering hidden local and distal inhibitory connections in the mouse hippocampal formation and by imaging the functional properties of a cortical microcircuit across weeks. Our novel production pipeline provides a convenient approach to generate new rabies vectors, while our toolkit flexibly and efficiently expands the current capacity to label, manipulate and image the neuronal activity of interconnected neuronal circuits in vitro and in vivo."}],"language":[{"iso":"eng"}],"publication_identifier":{"eissn":["2050-084X"]},"doi":"10.7554/elife.79848","ddc":["570"],"acknowledged_ssus":[{"_id":"Bio"},{"_id":"PreCl"}],"volume":11,"intvolume":"        11","acknowledgement":"We thank F Marr for technical assistance, A Murray for RVdG-CVS-N2c viruses and Neuro2A packaging cell-lines and J Watson for reading the manuscript. This research was supported by the Scientific Service Units (SSU) of IST-Austria through resources provided by the Imaging and Optics Facility (IOF) and the Preclinical Facility (PCF). This project was funded by the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (ERC advanced grant No 692692, PJ, ERC starting grant No 756502, MJ), the Fond zur Förderung der Wissenschaftlichen Forschung (Z 312-B27, Wittgenstein award, PJ), the Human Frontier Science Program (LT000256/2018-L, AS) and EMBO (ALTF 1098-2017, AS).","fulldoi":"https://doi.org/10.7554/elife.79848"},{"ddc":["510"],"volume":27,"acknowledgement":"L. Erdős was supported by ERC Advanced Grant “RMTBeyond” No. 101020331. D. Schröder was supported by Dr. Max Rössler, the Walter Haefner Foundation and the ETH Zürich Foundation.","intvolume":"        27","fulldoi":"https://doi.org/10.1214/22-ejp838","isi":1,"abstract":[{"lang":"eng","text":"We prove local laws, i.e. optimal concentration estimates for arbitrary products of resolvents of a Wigner random matrix with deterministic matrices in between. We find that the size of such products heavily depends on whether some of the deterministic matrices are traceless. Our estimates correctly account for this dependence and they hold optimally down to the smallest possible spectral scale."}],"language":[{"iso":"eng"}],"publication_identifier":{"eissn":["1083-6489"]},"doi":"10.1214/22-ejp838","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"has_accepted_license":"1","status":"public","citation":{"mla":"Cipolloni, Giorgio, et al. “Optimal Multi-Resolvent Local Laws for Wigner Matrices.” <i>Electronic Journal of Probability</i>, vol. 27, Institute of Mathematical Statistics, 2022, pp. 1–38, doi:<a href=\"https://doi.org/10.1214/22-ejp838\">10.1214/22-ejp838</a>.","ama":"Cipolloni G, Erdös L, Schröder DJ. Optimal multi-resolvent local laws for Wigner matrices. <i>Electronic Journal of Probability</i>. 2022;27:1-38. doi:<a href=\"https://doi.org/10.1214/22-ejp838\">10.1214/22-ejp838</a>","chicago":"Cipolloni, Giorgio, László Erdös, and Dominik J Schröder. “Optimal Multi-Resolvent Local Laws for Wigner Matrices.” <i>Electronic Journal of Probability</i>. Institute of Mathematical Statistics, 2022. <a href=\"https://doi.org/10.1214/22-ejp838\">https://doi.org/10.1214/22-ejp838</a>.","short":"G. Cipolloni, L. Erdös, D.J. Schröder, Electronic Journal of Probability 27 (2022) 1–38.","ieee":"G. Cipolloni, L. Erdös, and D. J. Schröder, “Optimal multi-resolvent local laws for Wigner matrices,” <i>Electronic Journal of Probability</i>, vol. 27. Institute of Mathematical Statistics, pp. 1–38, 2022.","apa":"Cipolloni, G., Erdös, L., &#38; Schröder, D. J. (2022). Optimal multi-resolvent local laws for Wigner matrices. <i>Electronic Journal of Probability</i>. Institute of Mathematical Statistics. <a href=\"https://doi.org/10.1214/22-ejp838\">https://doi.org/10.1214/22-ejp838</a>","ista":"Cipolloni G, Erdös L, Schröder DJ. 2022. Optimal multi-resolvent local laws for Wigner matrices. Electronic Journal of Probability. 27, 1–38."},"keyword":["Statistics","Probability and Uncertainty","Statistics and Probability"],"external_id":{"isi":["000910863700003"]},"oa_version":"Published Version","day":"12","month":"09","date_updated":"2025-04-14T07:57:19Z","article_processing_charge":"No","article_type":"original","title":"Optimal multi-resolvent local laws for Wigner matrices","date_created":"2023-01-16T10:04:38Z","_id":"12290","ec_funded":1,"author":[{"full_name":"Cipolloni, Giorgio","id":"42198EFA-F248-11E8-B48F-1D18A9856A87","first_name":"Giorgio","orcid":"0000-0002-4901-7992","last_name":"Cipolloni"},{"first_name":"László","last_name":"Erdös","orcid":"0000-0001-5366-9603","full_name":"Erdös, László","id":"4DBD5372-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Schröder, Dominik J","id":"408ED176-F248-11E8-B48F-1D18A9856A87","first_name":"Dominik J","orcid":"0000-0002-2904-1856","last_name":"Schröder"}],"date_published":"2022-09-12T00:00:00Z","publication":"Electronic Journal of Probability","file":[{"access_level":"open_access","content_type":"application/pdf","file_name":"2022_ElecJournProbability_Cipolloni.pdf","creator":"dernst","relation":"main_file","checksum":"bb647b48fbdb59361210e425c220cdcb","date_updated":"2023-01-30T11:59:21Z","file_id":"12464","success":1,"file_size":502149,"date_created":"2023-01-30T11:59:21Z"}],"type":"journal_article","scopus_import":"1","year":"2022","corr_author":"1","department":[{"_id":"LaEr"}],"project":[{"_id":"62796744-2b32-11ec-9570-940b20777f1d","grant_number":"101020331","name":"Random matrices beyond Wigner-Dyson-Mehta","call_identifier":"H2020"}],"oa":1,"quality_controlled":"1","publisher":"Institute of Mathematical Statistics","publication_status":"published","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","page":"1-38","file_date_updated":"2023-01-30T11:59:21Z"},{"publication":"Biochemical Pathways and Environmental Responses in Plants: Part A","author":[{"first_name":"Roshan","orcid":"0000-0002-0346-9125","last_name":"Kumar","full_name":"Kumar, Roshan","id":"50e95140-3016-11ec-9e1a-881b648a1367"},{"last_name":"Reichelt","first_name":"Michael","full_name":"Reichelt, Michael"},{"full_name":"Bisht, Naveen C.","last_name":"Bisht","first_name":"Naveen C."}],"date_published":"2022-10-21T00:00:00Z","_id":"12294","date_created":"2023-01-16T10:05:13Z","title":"An LC-MS/MS Assay for Enzymatic Characterization of Methylthioalkylmalate Synthase (MAMS) Involved in Glucosinolate Biosynthesis","article_processing_charge":"No","month":"10","date_updated":"2025-07-03T14:02:58Z","page":"49-69","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"Elsevier","publication_status":"published","quality_controlled":"1","pmid":1,"type":"book_chapter","scopus_import":"1","year":"2022","doi":"10.1016/bs.mie.2022.07.019","publication_identifier":{"issn":["0076-6879"],"isbn":["9780323955614"]},"language":[{"iso":"eng"}],"abstract":[{"lang":"eng","text":"Brassicaceae are blessed with specialized metabolites called glucosinolates (GSLs), which along with their degradation products, are beneficial in agriculture and human health. To date, more than 130 GSL structures have been identified, mostly derived from the amino acid methionine. The biosynthesis of methionine-derived aliphatic GSLs starts with a side-chain elongation step involving a recursive three-step cyclic process that incorporates a new methylene group into the 2-oxo acid to form a series of elongated 2-oxo acids. Methylthioalkylmalate synthase (MAMS) catalyzes the first committed step in the side-chain elongation of methionine-derived GSLs. The substrate specificity of MAMS with different 2-oxo acids determines whether reaction products of a given cycle enter for an additional round of chain elongation or enter into core GSLs structure formation. Multiple MAMS encoding genes are present in the Brassicaceae species and are known to play a central role in shaping the diverse profile of aliphatic GSLs. We recently established a highly sensitive LC-MS/MS-based methodology that quantifies the MAMS activity by estimating the amount of the next intermediate of the pathway, the 2-malate derivatives. Overall, this chapter describes the protocol for the expression, purification, and steady-state kinetic analysis of the recombinant MAMS protein."}],"alternative_title":["Methods in Enzymology"],"fulldoi":"https://doi.org/10.1016/bs.mie.2022.07.019","intvolume":"       676","volume":676,"day":"21","external_id":{"pmid":["36280361"]},"oa_version":"None","editor":[{"last_name":"Jez","first_name":"Joseph","full_name":"Jez, Joseph"}],"citation":{"mla":"Kumar, Roshan, et al. “An LC-MS/MS Assay for Enzymatic Characterization of Methylthioalkylmalate Synthase (MAMS) Involved in Glucosinolate Biosynthesis.” <i>Biochemical Pathways and Environmental Responses in Plants: Part A</i>, edited by Joseph Jez, vol. 676, Elsevier, 2022, pp. 49–69, doi:<a href=\"https://doi.org/10.1016/bs.mie.2022.07.019\">10.1016/bs.mie.2022.07.019</a>.","ieee":"R. Kumar, M. Reichelt, and N. C. Bisht, “An LC-MS/MS Assay for Enzymatic Characterization of Methylthioalkylmalate Synthase (MAMS) Involved in Glucosinolate Biosynthesis,” in <i>Biochemical Pathways and Environmental Responses in Plants: Part A</i>, vol. 676, J. Jez, Ed. Elsevier, 2022, pp. 49–69.","chicago":"Kumar, Roshan, Michael Reichelt, and Naveen C. Bisht. “An LC-MS/MS Assay for Enzymatic Characterization of Methylthioalkylmalate Synthase (MAMS) Involved in Glucosinolate Biosynthesis.” In <i>Biochemical Pathways and Environmental Responses in Plants: Part A</i>, edited by Joseph Jez, 676:49–69. Elsevier, 2022. <a href=\"https://doi.org/10.1016/bs.mie.2022.07.019\">https://doi.org/10.1016/bs.mie.2022.07.019</a>.","short":"R. Kumar, M. Reichelt, N.C. Bisht, in:, J. Jez (Ed.), Biochemical Pathways and Environmental Responses in Plants: Part A, Elsevier, 2022, pp. 49–69.","ama":"Kumar R, Reichelt M, Bisht NC. An LC-MS/MS Assay for Enzymatic Characterization of Methylthioalkylmalate Synthase (MAMS) Involved in Glucosinolate Biosynthesis. In: Jez J, ed. <i>Biochemical Pathways and Environmental Responses in Plants: Part A</i>. Vol 676. Elsevier; 2022:49-69. doi:<a href=\"https://doi.org/10.1016/bs.mie.2022.07.019\">10.1016/bs.mie.2022.07.019</a>","apa":"Kumar, R., Reichelt, M., &#38; Bisht, N. C. (2022). An LC-MS/MS Assay for Enzymatic Characterization of Methylthioalkylmalate Synthase (MAMS) Involved in Glucosinolate Biosynthesis. In J. Jez (Ed.), <i>Biochemical Pathways and Environmental Responses in Plants: Part A</i> (Vol. 676, pp. 49–69). Elsevier. <a href=\"https://doi.org/10.1016/bs.mie.2022.07.019\">https://doi.org/10.1016/bs.mie.2022.07.019</a>","ista":"Kumar R, Reichelt M, Bisht NC. 2022.An LC-MS/MS Assay for Enzymatic Characterization of Methylthioalkylmalate Synthase (MAMS) Involved in Glucosinolate Biosynthesis. In: Biochemical Pathways and Environmental Responses in Plants: Part A. Methods in Enzymology, vol. 676, 49–69."},"status":"public"},{"author":[{"full_name":"Gelashvili, Rati","first_name":"Rati","last_name":"Gelashvili"},{"last_name":"Kokoris Kogias","first_name":"Eleftherios","id":"f5983044-d7ef-11ea-ac6d-fd1430a26d30","full_name":"Kokoris Kogias, Eleftherios"},{"last_name":"Sonnino","first_name":"Alberto","full_name":"Sonnino, Alberto"},{"first_name":"Alexander","last_name":"Spiegelman","full_name":"Spiegelman, Alexander"},{"full_name":"Xiang, Zhuolun","last_name":"Xiang","first_name":"Zhuolun"}],"date_published":"2022-10-22T00:00:00Z","publication":"Financial Cryptography and Data Security","_id":"12298","conference":{"end_date":"2022-05-06","start_date":"2022-05-02","name":"FC: Financial Cryptography","location":"Radisson Grenada Beach Resort, Grenada"},"title":"Jolteon and ditto: Network-adaptive efficient consensus with asynchronous fallback","arxiv":1,"date_created":"2023-01-16T10:05:51Z","month":"10","date_updated":"2025-09-10T09:52:23Z","article_processing_charge":"No","publisher":"Springer Nature","publication_status":"published","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","page":"296-315","quality_controlled":"1","oa":1,"type":"conference","scopus_import":"1","year":"2022","department":[{"_id":"ElKo"}],"publication_identifier":{"eissn":["1611-3349"],"issn":["0302-9743"],"isbn":["9783031182822"],"eisbn":["9783031182839"]},"doi":"10.1007/978-3-031-18283-9_14","isi":1,"abstract":[{"lang":"eng","text":"Existing committee-based Byzantine state machine replication (SMR) protocols, typically deployed in production blockchains, face a clear trade-off: (1) they either achieve linear communication cost in the steady state, but sacrifice liveness during periods of asynchrony, or (2) they are robust (progress with probability one) but pay quadratic communication cost. We believe this trade-off is unwarranted since existing linear protocols still have asymptotic quadratic cost in the worst case. We design Ditto, a Byzantine SMR protocol that enjoys the best of both worlds: optimal communication on and off the steady state (linear and quadratic, respectively) and progress guarantee under asynchrony and DDoS attacks. We achieve this by replacing the view-synchronization of partially synchronous protocols with an asynchronous fallback mechanism at no extra asymptotic cost. Specifically, we start from HotStuff, a state-of-the-art linear protocol, and gradually build Ditto. As a separate contribution and an intermediate step, we design a 2-chain version of HotStuff, Jolteon, which leverages a quadratic view-change mechanism to reduce the latency of the standard 3-chain HotStuff. We implement and experimentally evaluate all our systems to prove that breaking the robustness-efficiency trade-off is in the realm of practicality."}],"language":[{"iso":"eng"}],"acknowledgement":"We thank our shepherd Aniket Kate and the anonymous reviewers at FC 2022 for their helpful feedback. This work is supported by the Novi team at Facebook. We also thank the Novi Research and Engineering teams for valuable feedback, and in particular Mathieu Baudet, Andrey Chursin, George Danezis, Zekun Li, and Dahlia Malkhi for discussions that shaped this work.","intvolume":"     13411","fulldoi":"https://doi.org/10.1007/978-3-031-18283-9_14","alternative_title":["LNCS"],"volume":13411,"external_id":{"arxiv":["2106.10362"],"isi":["001423640200014"]},"oa_version":"Preprint","main_file_link":[{"open_access":"1","url":" https://doi.org/10.48550/arXiv.2106.10362"}],"day":"22","citation":{"ieee":"R. Gelashvili, E. Kokoris Kogias, A. Sonnino, A. Spiegelman, and Z. Xiang, “Jolteon and ditto: Network-adaptive efficient consensus with asynchronous fallback,” in <i>Financial Cryptography and Data Security</i>, Radisson Grenada Beach Resort, Grenada, 2022, vol. 13411, pp. 296–315.","short":"R. Gelashvili, E. Kokoris Kogias, A. Sonnino, A. Spiegelman, Z. Xiang, in:, Financial Cryptography and Data Security, Springer Nature, 2022, pp. 296–315.","ama":"Gelashvili R, Kokoris Kogias E, Sonnino A, Spiegelman A, Xiang Z. Jolteon and ditto: Network-adaptive efficient consensus with asynchronous fallback. In: <i>Financial Cryptography and Data Security</i>. Vol 13411. Springer Nature; 2022:296-315. doi:<a href=\"https://doi.org/10.1007/978-3-031-18283-9_14\">10.1007/978-3-031-18283-9_14</a>","chicago":"Gelashvili, Rati, Eleftherios Kokoris Kogias, Alberto Sonnino, Alexander Spiegelman, and Zhuolun Xiang. “Jolteon and Ditto: Network-Adaptive Efficient Consensus with Asynchronous Fallback.” In <i>Financial Cryptography and Data Security</i>, 13411:296–315. Springer Nature, 2022. <a href=\"https://doi.org/10.1007/978-3-031-18283-9_14\">https://doi.org/10.1007/978-3-031-18283-9_14</a>.","mla":"Gelashvili, Rati, et al. “Jolteon and Ditto: Network-Adaptive Efficient Consensus with Asynchronous Fallback.” <i>Financial Cryptography and Data Security</i>, vol. 13411, Springer Nature, 2022, pp. 296–315, doi:<a href=\"https://doi.org/10.1007/978-3-031-18283-9_14\">10.1007/978-3-031-18283-9_14</a>.","ista":"Gelashvili R, Kokoris Kogias E, Sonnino A, Spiegelman A, Xiang Z. 2022. Jolteon and ditto: Network-adaptive efficient consensus with asynchronous fallback. Financial Cryptography and Data Security. FC: Financial Cryptography, LNCS, vol. 13411, 296–315.","apa":"Gelashvili, R., Kokoris Kogias, E., Sonnino, A., Spiegelman, A., &#38; Xiang, Z. (2022). Jolteon and ditto: Network-adaptive efficient consensus with asynchronous fallback. In <i>Financial Cryptography and Data Security</i> (Vol. 13411, pp. 296–315). Radisson Grenada Beach Resort, Grenada: Springer Nature. <a href=\"https://doi.org/10.1007/978-3-031-18283-9_14\">https://doi.org/10.1007/978-3-031-18283-9_14</a>"},"status":"public"},{"has_accepted_license":"1","status":"public","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"citation":{"chicago":"Doveri, Kyveli, Pierre Ganty, and Nicolas Adrien Mazzocchi. “FORQ-Based Language Inclusion Formal Testing.” In <i>Computer Aided Verification</i>, 13372:109–29. Springer Nature, 2022. <a href=\"https://doi.org/10.1007/978-3-031-13188-2_6\">https://doi.org/10.1007/978-3-031-13188-2_6</a>.","ama":"Doveri K, Ganty P, Mazzocchi NA. FORQ-based language inclusion formal testing. In: <i>Computer Aided Verification</i>. Vol 13372. Springer Nature; 2022:109-129. doi:<a href=\"https://doi.org/10.1007/978-3-031-13188-2_6\">10.1007/978-3-031-13188-2_6</a>","short":"K. Doveri, P. Ganty, N.A. Mazzocchi, in:, Computer Aided Verification, Springer Nature, 2022, pp. 109–129.","ieee":"K. Doveri, P. Ganty, and N. A. Mazzocchi, “FORQ-based language inclusion formal testing,” in <i>Computer Aided Verification</i>, Haifa, Israel, 2022, vol. 13372, pp. 109–129.","mla":"Doveri, Kyveli, et al. “FORQ-Based Language Inclusion Formal Testing.” <i>Computer Aided Verification</i>, vol. 13372, Springer Nature, 2022, pp. 109–29, doi:<a href=\"https://doi.org/10.1007/978-3-031-13188-2_6\">10.1007/978-3-031-13188-2_6</a>.","ista":"Doveri K, Ganty P, Mazzocchi NA. 2022. FORQ-based language inclusion formal testing. Computer Aided Verification. CAV: Computer Aided Verification, LNCS, vol. 13372, 109–129.","apa":"Doveri, K., Ganty, P., &#38; Mazzocchi, N. A. (2022). FORQ-based language inclusion formal testing. In <i>Computer Aided Verification</i> (Vol. 13372, pp. 109–129). Haifa, Israel: Springer Nature. <a href=\"https://doi.org/10.1007/978-3-031-13188-2_6\">https://doi.org/10.1007/978-3-031-13188-2_6</a>"},"day":"06","oa_version":"Published Version","external_id":{"isi":["000870310500006"],"arxiv":["2207.13549"]},"volume":13372,"ddc":["000"],"fulldoi":"https://doi.org/10.1007/978-3-031-13188-2_6","alternative_title":["LNCS"],"acknowledgement":"This work was partially funded by the ESF Investing in your future, the Madrid regional project S2018/TCS-4339 BLOQUES, the Spanish project PGC2018-102210-B-I00 BOSCO, the Ramón y Cajal fellowship RYC-2016-20281, and the ERC grant PR1001ERC02.","intvolume":"     13372","language":[{"iso":"eng"}],"abstract":[{"text":"We propose a novel algorithm to decide the language inclusion between (nondeterministic) Büchi automata, a PSPACE-complete problem. Our approach, like others before, leverage a notion of quasiorder to prune the search for a counterexample by discarding candidates which are subsumed by others for the quasiorder. Discarded candidates are guaranteed to not compromise the completeness of the algorithm. The novelty of our work lies in the quasiorder used to discard candidates. We introduce FORQs (family of right quasiorders) that we obtain by adapting the notion of family of right congruences put forward by Maler and Staiger in 1993. We define a FORQ-based inclusion algorithm which we prove correct and instantiate it for a specific FORQ, called the structural FORQ, induced by the Büchi automaton to the right of the inclusion sign. The resulting implementation, called FORKLIFT, scales up better than the state-of-the-art on a variety of benchmarks including benchmarks from program verification and theorem proving for word combinatorics. Artifact: https://doi.org/10.5281/zenodo.6552870","lang":"eng"}],"isi":1,"doi":"10.1007/978-3-031-13188-2_6","publication_identifier":{"eisbn":["9783031131882"],"isbn":["9783031131875"],"issn":["0302-9743"],"eissn":["1611-3349"]},"project":[{"_id":"62781420-2b32-11ec-9570-8d9b63373d4d","grant_number":"101020093","name":"Vigilant Algorithmic Monitoring of Software","call_identifier":"H2020"}],"department":[{"_id":"ToHe"}],"scopus_import":"1","year":"2022","type":"conference","quality_controlled":"1","oa":1,"file_date_updated":"2023-01-30T12:51:02Z","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","page":"109-129","publication_status":"published","publisher":"Springer Nature","article_processing_charge":"No","date_updated":"2025-04-14T07:55:56Z","month":"08","date_created":"2023-01-16T10:06:31Z","arxiv":1,"title":"FORQ-based language inclusion formal testing","conference":{"end_date":"2022-08-10","location":"Haifa, Israel","name":"CAV: Computer Aided Verification","start_date":"2022-08-07"},"ec_funded":1,"_id":"12302","publication":"Computer Aided Verification","file":[{"file_size":497682,"date_created":"2023-01-30T12:51:02Z","date_updated":"2023-01-30T12:51:02Z","file_id":"12465","success":1,"file_name":"2022_LNCS_Doveri.pdf","creator":"dernst","checksum":"edc363b1be5447a09063e115c247918a","relation":"main_file","access_level":"open_access","content_type":"application/pdf"}],"date_published":"2022-08-06T00:00:00Z","author":[{"full_name":"Doveri, Kyveli","last_name":"Doveri","first_name":"Kyveli"},{"last_name":"Ganty","first_name":"Pierre","full_name":"Ganty, Pierre"},{"full_name":"Mazzocchi, Nicolas Adrien","id":"b26baa86-3308-11ec-87b0-8990f34baa85","first_name":"Nicolas Adrien","last_name":"Mazzocchi"}]},{"project":[{"_id":"25E549F4-B435-11E9-9278-68D0E5697425","grant_number":"320593","name":"Arithmetic and physics of Higgs moduli spaces","call_identifier":"FP7"}],"department":[{"_id":"TaHa"}],"scopus_import":"1","type":"book_chapter","year":"2022","oa":1,"quality_controlled":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","page":"347-392","publication_status":"published","publisher":"Springer Nature; Birkhäuser","article_processing_charge":"No","date_updated":"2025-04-14T09:12:46Z","month":"06","date_created":"2023-01-16T10:06:41Z","arxiv":1,"title":"Loop Grassmannians of Quivers and Affine Quantum Groups","ec_funded":1,"_id":"12303","publication":"Representation Theory and Algebraic Geometry","date_published":"2022-06-16T00:00:00Z","author":[{"full_name":"Mirković, Ivan","last_name":"Mirković","first_name":"Ivan"},{"first_name":"Yaping","last_name":"Yang","full_name":"Yang, Yaping"},{"first_name":"Gufang","last_name":"Zhao","full_name":"Zhao, Gufang","id":"2BC2AC5E-F248-11E8-B48F-1D18A9856A87"}],"status":"public","place":"Cham","editor":[{"last_name":"Baranovskky","first_name":"Vladimir","full_name":"Baranovskky, Vladimir"},{"full_name":"Guay, Nicolas","first_name":"Nicolas","last_name":"Guay"},{"first_name":"Travis","last_name":"Schedler","full_name":"Schedler, Travis"}],"citation":{"apa":"Mirković, I., Yang, Y., &#38; Zhao, G. (2022). Loop Grassmannians of Quivers and Affine Quantum Groups. In V. Baranovskky, N. Guay, &#38; T. Schedler (Eds.), <i>Representation Theory and Algebraic Geometry</i> (1st ed., pp. 347–392). Cham: Springer Nature; Birkhäuser. <a href=\"https://doi.org/10.1007/978-3-030-82007-7_8\">https://doi.org/10.1007/978-3-030-82007-7_8</a>","ista":"Mirković I, Yang Y, Zhao G. 2022.Loop Grassmannians of Quivers and Affine Quantum Groups. In: Representation Theory and Algebraic Geometry. Trends in Mathematics, , 347–392.","mla":"Mirković, Ivan, et al. “Loop Grassmannians of Quivers and Affine Quantum Groups.” <i>Representation Theory and Algebraic Geometry</i>, edited by Vladimir Baranovskky et al., 1st ed., Springer Nature; Birkhäuser, 2022, pp. 347–92, doi:<a href=\"https://doi.org/10.1007/978-3-030-82007-7_8\">10.1007/978-3-030-82007-7_8</a>.","chicago":"Mirković, Ivan, Yaping Yang, and Gufang Zhao. “Loop Grassmannians of Quivers and Affine Quantum Groups.” In <i>Representation Theory and Algebraic Geometry</i>, edited by Vladimir Baranovskky, Nicolas Guay, and Travis Schedler, 1st ed., 347–92. TM. Cham: Springer Nature; Birkhäuser, 2022. <a href=\"https://doi.org/10.1007/978-3-030-82007-7_8\">https://doi.org/10.1007/978-3-030-82007-7_8</a>.","short":"I. Mirković, Y. Yang, G. Zhao, in:, V. Baranovskky, N. Guay, T. Schedler (Eds.), Representation Theory and Algebraic Geometry, 1st ed., Springer Nature; Birkhäuser, Cham, 2022, pp. 347–392.","ama":"Mirković I, Yang Y, Zhao G. Loop Grassmannians of Quivers and Affine Quantum Groups. In: Baranovskky V, Guay N, Schedler T, eds. <i>Representation Theory and Algebraic Geometry</i>. 1st ed. TM. Cham: Springer Nature; Birkhäuser; 2022:347-392. doi:<a href=\"https://doi.org/10.1007/978-3-030-82007-7_8\">10.1007/978-3-030-82007-7_8</a>","ieee":"I. Mirković, Y. Yang, and G. Zhao, “Loop Grassmannians of Quivers and Affine Quantum Groups,” in <i>Representation Theory and Algebraic Geometry</i>, 1st ed., V. Baranovskky, N. Guay, and T. Schedler, Eds. Cham: Springer Nature; Birkhäuser, 2022, pp. 347–392."},"day":"16","edition":"1","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.1810.10095"}],"oa_version":"Preprint","external_id":{"arxiv":["1810.10095"]},"alternative_title":["Trends in Mathematics"],"fulldoi":"https://doi.org/10.1007/978-3-030-82007-7_8","acknowledgement":"I.M. thanks Zhijie Dong for long-term discussions on the material that entered this work. We thank Misha Finkelberg for pointing out errors in earlier versions. His advice and his insistence have led to a much better paper. A part of the writing was done at the conference at IST (Vienna) attended by all coauthors. We therefore thank the organizers of the conference and the support of ERC Advanced Grant Arithmetic and Physics of Higgs moduli spaces No. 320593. The work of I.M. was partially supported by NSF grants. The work of Y.Y. was partially supported by the Australian Research Council (ARC) via the award DE190101231. The work of G.Z. was partially supported by ARC via the award DE190101222.","language":[{"iso":"eng"}],"abstract":[{"text":"We construct for each choice of a quiver Q, a cohomology theory A, and a poset P a “loop Grassmannian” GP(Q,A). This generalizes loop Grassmannians of semisimple groups and the loop Grassmannians of based quadratic forms. The addition of a “dilation” torus D⊆G2m gives a quantization GPD(Q,A). This construction is motivated by the program of introducing an inner cohomology theory in algebraic geometry adequate for the Geometric Langlands program (Mirković, Some extensions of the notion of loop Grassmannians. Rad Hrvat. Akad. Znan. Umjet. Mat. Znan., the Mardešić issue. No. 532, 53–74, 2017) and on the construction of affine quantum groups from generalized cohomology theories (Yang and Zhao, Quiver varieties and elliptic quantum groups, preprint. arxiv1708.01418).","lang":"eng"}],"doi":"10.1007/978-3-030-82007-7_8","publication_identifier":{"eisbn":["9783030820077"],"isbn":["9783030820060"],"issn":["2297-0215"],"eissn":["2297-024X"]},"series_title":"TM"},{"oa":1,"quality_controlled":"1","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","page":"1394-1434","publication_status":"published","publisher":"Taylor & Francis","department":[{"_id":"JuFi"}],"corr_author":"1","scopus_import":"1","type":"journal_article","year":"2022","_id":"12304","publication":"Communications in Partial Differential Equations","date_published":"2022-07-01T00:00:00Z","author":[{"full_name":"De Nitti, Nicola","first_name":"Nicola","last_name":"De Nitti"},{"id":"2C12A0B0-F248-11E8-B48F-1D18A9856A87","full_name":"Fischer, Julian L","last_name":"Fischer","orcid":"0000-0002-0479-558X","first_name":"Julian L"}],"article_processing_charge":"No","date_updated":"2024-10-09T21:03:57Z","month":"07","date_created":"2023-01-16T10:06:50Z","arxiv":1,"title":"Sharp criteria for the waiting time phenomenon in solutions to the thin-film equation","article_type":"original","issue":"7","citation":{"ista":"De Nitti N, Fischer JL. 2022. Sharp criteria for the waiting time phenomenon in solutions to the thin-film equation. Communications in Partial Differential Equations. 47(7), 1394–1434.","apa":"De Nitti, N., &#38; Fischer, J. L. (2022). Sharp criteria for the waiting time phenomenon in solutions to the thin-film equation. <i>Communications in Partial Differential Equations</i>. Taylor &#38; Francis. <a href=\"https://doi.org/10.1080/03605302.2022.2056702\">https://doi.org/10.1080/03605302.2022.2056702</a>","ieee":"N. De Nitti and J. L. Fischer, “Sharp criteria for the waiting time phenomenon in solutions to the thin-film equation,” <i>Communications in Partial Differential Equations</i>, vol. 47, no. 7. Taylor &#38; Francis, pp. 1394–1434, 2022.","ama":"De Nitti N, Fischer JL. Sharp criteria for the waiting time phenomenon in solutions to the thin-film equation. <i>Communications in Partial Differential Equations</i>. 2022;47(7):1394-1434. doi:<a href=\"https://doi.org/10.1080/03605302.2022.2056702\">10.1080/03605302.2022.2056702</a>","chicago":"De Nitti, Nicola, and Julian L Fischer. “Sharp Criteria for the Waiting Time Phenomenon in Solutions to the Thin-Film Equation.” <i>Communications in Partial Differential Equations</i>. Taylor &#38; Francis, 2022. <a href=\"https://doi.org/10.1080/03605302.2022.2056702\">https://doi.org/10.1080/03605302.2022.2056702</a>.","short":"N. De Nitti, J.L. Fischer, Communications in Partial Differential Equations 47 (2022) 1394–1434.","mla":"De Nitti, Nicola, and Julian L. Fischer. “Sharp Criteria for the Waiting Time Phenomenon in Solutions to the Thin-Film Equation.” <i>Communications in Partial Differential Equations</i>, vol. 47, no. 7, Taylor &#38; Francis, 2022, pp. 1394–434, doi:<a href=\"https://doi.org/10.1080/03605302.2022.2056702\">10.1080/03605302.2022.2056702</a>."},"day":"01","main_file_link":[{"url":" https://doi.org/10.48550/arXiv.1907.05342","open_access":"1"}],"oa_version":"Preprint","keyword":["Applied Mathematics","Analysis"],"external_id":{"arxiv":["1907.05342"],"isi":["000805689800001"]},"status":"public","language":[{"iso":"eng"}],"abstract":[{"lang":"eng","text":"We establish sharp criteria for the instantaneous propagation of free boundaries in solutions to the thin-film equation. The criteria are formulated in terms of the initial distribution of mass (as opposed to previous almost-optimal results), reflecting the fact that mass is a locally conserved quantity for the thin-film equation. In the regime of weak slippage, our criteria are at the same time necessary and sufficient. The proof of our upper bounds on free boundary propagation is based on a strategy of “propagation of degeneracy” down to arbitrarily small spatial scales: We combine estimates on the local mass and estimates on energies to show that “degeneracy” on a certain space-time cylinder entails “degeneracy” on a spatially smaller space-time cylinder with the same time horizon. The derivation of our lower bounds on free boundary propagation is based on a combination of a monotone quantity and almost optimal estimates established previously by the second author with a new estimate connecting motion of mass to entropy production."}],"isi":1,"doi":"10.1080/03605302.2022.2056702","publication_identifier":{"issn":["0360-5302"],"eissn":["1532-4133"]},"volume":47,"fulldoi":"https://doi.org/10.1080/03605302.2022.2056702","intvolume":"        47","acknowledgement":"N. De Nitti acknowledges the kind hospitality of IST Austria within the framework of the ISTernship Summer Program 2018, during which most of the present article was written. N. DeNitti has received funding by The Austrian Agency for International Cooperation in Education &Research (OeAD-GmbH) via its financial support of the ISTernship Summer Program 2018. N.De Nitti would also like to thank Giuseppe Coclite, Giuseppe Devillanova, Giuseppe Florio, Sebastian Hensel, and Francesco Maddalena for several helpful conversations on topics related to this work."},{"language":[{"iso":"eng"}],"isi":1,"abstract":[{"lang":"eng","text":"This paper is concerned with the sharp interface limit for the Allen--Cahn equation with a nonlinear Robin boundary condition in a bounded smooth domain Ω⊂\\R2. We assume that a diffuse interface already has developed and that it is in contact with the boundary ∂Ω. The boundary condition is designed in such a way that the limit problem is given by the mean curvature flow with constant α-contact angle. For α close to 90° we prove a local in time convergence result for well-prepared initial data for times when a smooth solution to the limit problem exists. Based on the latter we construct a suitable curvilinear coordinate system and carry out a rigorous asymptotic expansion for the Allen--Cahn equation with the nonlinear Robin boundary condition. Moreover, we show a spectral estimate for the corresponding linearized Allen--Cahn operator and with its aid we derive strong norm estimates for the difference of the exact and approximate solutions using a Gronwall-type argument."}],"doi":"10.1137/21m1424925","publication_identifier":{"issn":["0036-1410"],"eissn":["1095-7154"]},"volume":54,"fulldoi":"https://doi.org/10.1137/21m1424925","intvolume":"        54","issue":"1","citation":{"ista":"Abels H, Moser M. 2022. Convergence of the Allen--Cahn equation with a nonlinear Robin boundary condition to mean curvature flow with contact angle close to 90°. SIAM Journal on Mathematical Analysis. 54(1), 114–172.","apa":"Abels, H., &#38; Moser, M. (2022). Convergence of the Allen--Cahn equation with a nonlinear Robin boundary condition to mean curvature flow with contact angle close to 90°. <i>SIAM Journal on Mathematical Analysis</i>. Society for Industrial and Applied Mathematics. <a href=\"https://doi.org/10.1137/21m1424925\">https://doi.org/10.1137/21m1424925</a>","ieee":"H. Abels and M. Moser, “Convergence of the Allen--Cahn equation with a nonlinear Robin boundary condition to mean curvature flow with contact angle close to 90°,” <i>SIAM Journal on Mathematical Analysis</i>, vol. 54, no. 1. Society for Industrial and Applied Mathematics, pp. 114–172, 2022.","chicago":"Abels, Helmut, and Maximilian Moser. “Convergence of the Allen--Cahn Equation with a Nonlinear Robin Boundary Condition to Mean Curvature Flow with Contact Angle Close to 90°.” <i>SIAM Journal on Mathematical Analysis</i>. Society for Industrial and Applied Mathematics, 2022. <a href=\"https://doi.org/10.1137/21m1424925\">https://doi.org/10.1137/21m1424925</a>.","short":"H. Abels, M. Moser, SIAM Journal on Mathematical Analysis 54 (2022) 114–172.","ama":"Abels H, Moser M. Convergence of the Allen--Cahn equation with a nonlinear Robin boundary condition to mean curvature flow with contact angle close to 90°. <i>SIAM Journal on Mathematical Analysis</i>. 2022;54(1):114-172. doi:<a href=\"https://doi.org/10.1137/21m1424925\">10.1137/21m1424925</a>","mla":"Abels, Helmut, and Maximilian Moser. “Convergence of the Allen--Cahn Equation with a Nonlinear Robin Boundary Condition to Mean Curvature Flow with Contact Angle Close to 90°.” <i>SIAM Journal on Mathematical Analysis</i>, vol. 54, no. 1, Society for Industrial and Applied Mathematics, 2022, pp. 114–72, doi:<a href=\"https://doi.org/10.1137/21m1424925\">10.1137/21m1424925</a>."},"main_file_link":[{"url":" https://doi.org/10.48550/arXiv.2105.08434","open_access":"1"}],"day":"04","keyword":["Applied Mathematics","Computational Mathematics","Analysis"],"external_id":{"isi":["000762768000004"],"arxiv":["2105.08434"]},"oa_version":"Preprint","status":"public","_id":"12305","publication":"SIAM Journal on Mathematical Analysis","author":[{"full_name":"Abels, Helmut","last_name":"Abels","first_name":"Helmut"},{"last_name":"Moser","first_name":"Maximilian","id":"a60047a9-da77-11eb-85b4-c4dc385ebb8c","full_name":"Moser, Maximilian"}],"date_published":"2022-01-04T00:00:00Z","article_processing_charge":"No","month":"01","date_updated":"2024-10-09T21:03:58Z","arxiv":1,"date_created":"2023-01-16T10:07:00Z","title":"Convergence of the Allen--Cahn equation with a nonlinear Robin boundary condition to mean curvature flow with contact angle close to 90°","article_type":"original","quality_controlled":"1","oa":1,"page":"114-172","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","publisher":"Society for Industrial and Applied Mathematics","publication_status":"published","department":[{"_id":"JuFi"}],"type":"journal_article","scopus_import":"1","year":"2022","corr_author":"1"},{"publication_identifier":{"issn":["1051-1970"],"eissn":["1935-4053"]},"doi":"10.1080/10511970.2021.1872750","abstract":[{"lang":"eng","text":"Point-set topology is among the most abstract branches of mathematics in that it lacks tangible notions of distance, length, magnitude, order, and size. There is no shape, no geometry, no algebra, and no direction. Everything we are used to visualizing is gone. In the teaching and learning of mathematics, this can present a conundrum. Yet, this very property makes point set topology perfect for teaching and learning abstract mathematical concepts. It clears our minds of preconceived intuitions and expectations and forces us to think in new and creative ways. In this paper, we present guided investigations into topology through questions and thinking strategies that open up fascinating problems. They are intended for faculty who already teach or are thinking about teaching a class in topology or abstract mathematical reasoning for undergraduates. They can be used to build simple to challenging projects in topology, proofs, honors programs, and research experiences."}],"language":[{"iso":"eng"}],"intvolume":"        32","fulldoi":"https://doi.org/10.1080/10511970.2021.1872750","volume":32,"keyword":["Education","General Mathematics"],"oa_version":"None","day":"28","citation":{"apa":"Shipman, B. A., &#38; Stephenson, E. R. (2022). Tangible topology through the lens of limits. <i>PRIMUS</i>. Taylor &#38; Francis. <a href=\"https://doi.org/10.1080/10511970.2021.1872750\">https://doi.org/10.1080/10511970.2021.1872750</a>","ista":"Shipman BA, Stephenson ER. 2022. Tangible topology through the lens of limits. PRIMUS. 32(5), 593–609.","mla":"Shipman, Barbara A., and Elizabeth R. Stephenson. “Tangible Topology through the Lens of Limits.” <i>PRIMUS</i>, vol. 32, no. 5, Taylor &#38; Francis, 2022, pp. 593–609, doi:<a href=\"https://doi.org/10.1080/10511970.2021.1872750\">10.1080/10511970.2021.1872750</a>.","chicago":"Shipman, Barbara A., and Elizabeth R Stephenson. “Tangible Topology through the Lens of Limits.” <i>PRIMUS</i>. Taylor &#38; Francis, 2022. <a href=\"https://doi.org/10.1080/10511970.2021.1872750\">https://doi.org/10.1080/10511970.2021.1872750</a>.","ama":"Shipman BA, Stephenson ER. Tangible topology through the lens of limits. <i>PRIMUS</i>. 2022;32(5):593-609. doi:<a href=\"https://doi.org/10.1080/10511970.2021.1872750\">10.1080/10511970.2021.1872750</a>","short":"B.A. Shipman, E.R. Stephenson, PRIMUS 32 (2022) 593–609.","ieee":"B. A. Shipman and E. R. Stephenson, “Tangible topology through the lens of limits,” <i>PRIMUS</i>, vol. 32, no. 5. Taylor &#38; Francis, pp. 593–609, 2022."},"issue":"5","status":"public","author":[{"first_name":"Barbara A.","last_name":"Shipman","full_name":"Shipman, Barbara A."},{"first_name":"Elizabeth R","orcid":"0000-0002-6862-208X","last_name":"Stephenson","full_name":"Stephenson, Elizabeth R","id":"2D04F932-F248-11E8-B48F-1D18A9856A87"}],"date_published":"2022-05-28T00:00:00Z","publication":"PRIMUS","_id":"12307","title":"Tangible topology through the lens of limits","article_type":"original","date_created":"2023-01-16T10:07:21Z","month":"05","date_updated":"2024-10-09T21:03:58Z","article_processing_charge":"No","publisher":"Taylor & Francis","publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","page":"593-609","quality_controlled":"1","year":"2022","type":"journal_article","scopus_import":"1","corr_author":"1","department":[{"_id":"HeEd"},{"_id":"GradSch"}]}]