[{"intvolume":"       324","project":[{"name":"HighTE: The Werner Siemens Laboratory for the High Throughput Discovery of Semiconductors for Waste Heat Recovery","_id":"9B8F7476-BA93-11EA-9121-9846C619BF3A"}],"doi":"10.1016/j.ces.2026.123348","file":[{"checksum":"c47f1704be452cdefb2b930884693578","creator":"dernst","file_name":"2026_ChemicalEngineeringScience_Shi.pdf","access_level":"open_access","date_created":"2026-07-27T11:03:37Z","success":1,"file_id":"22418","file_size":8345535,"date_updated":"2026-07-27T11:03:37Z","relation":"main_file","content_type":"application/pdf"}],"publication_status":"published","oa":1,"author":[{"full_name":"Shi, Changwei","last_name":"Shi","first_name":"Changwei"},{"first_name":"Sharona","last_name":"Horta","id":"03a7e858-01b1-11ec-8b71-99ae6c4a05bc","full_name":"Horta, Sharona"},{"orcid":"0000-0001-5013-2843","last_name":"Ibáñez","first_name":"Maria","full_name":"Ibáñez, Maria","id":"43C61214-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Kallio, Tanja","first_name":"Tanja","last_name":"Kallio"},{"first_name":"Paulina R.","last_name":"Martínez-Alanis","full_name":"Martínez-Alanis, Paulina R."},{"last_name":"Wang","first_name":"Xiang","full_name":"Wang, Xiang"},{"last_name":"Cabot","first_name":"Andreu","full_name":"Cabot, Andreu"}],"ddc":["540"],"language":[{"iso":"eng"}],"file_date_updated":"2026-07-27T11:03:37Z","dataavailabilitystatement":"Data will be made available on request.","article_type":"original","date_created":"2026-01-25T23:01:39Z","year":"2026","publication":"Chemical Engineering Science","OA_place":"publisher","researchdata_availability":"upon request","day":"01","has_accepted_license":"1","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"department":[{"_id":"MaIb"}],"_id":"21037","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"04","date_updated":"2026-07-27T11:03:48Z","quality_controlled":"1","acknowledgement":"The authors thank the support from the National Natural Science Foundation of China (NSFC) (Grants No. 22302151) and Natural Science Foundation of Hubei Province (Grants No. 2024AFB755, 2024AFB267), Key Project of Hubei Provincial Department of Education Scientific Research Plan (F2023007). This work is supported by funding from Shandong Provincial Key Laboratory of MonocrystallineSilicon Semiconductor Materials and Technology (2025KFKT021). This research was supported by the Scientific Service Units (SSU) of ISTA Austria through resources provided by the Electron Microscopy Facility (EMF) and the Nanofabrication Facility (NNF). “M.I. and S.H. acknowledge financial support from ISTA and the Werner Siemens Foundation.”","date_published":"2026-04-01T00:00:00Z","article_processing_charge":"Yes (in subscription journal)","PlanS_conform":"1","title":"Hydrogen induced palladium-based heterojunction electrocatalysts to enhance the oxygen reduction reaction performance","acknowledged_ssus":[{"_id":"EM-Fac"},{"_id":"NanoFab"}],"volume":324,"status":"public","publication_identifier":{"eissn":["0009-2509"],"issn":["1873-4405"]},"type":"journal_article","supplementarymaterial":"yes","OA_type":"hybrid","das_tickbox":"1","publisher":"Elsevier","oa_version":"Published Version","citation":{"ama":"Shi C, Horta S, Ibáñez M, et al. Hydrogen induced palladium-based heterojunction electrocatalysts to enhance the oxygen reduction reaction performance. <i>Chemical Engineering Science</i>. 2026;324. doi:<a href=\"https://doi.org/10.1016/j.ces.2026.123348\">10.1016/j.ces.2026.123348</a>","ieee":"C. Shi <i>et al.</i>, “Hydrogen induced palladium-based heterojunction electrocatalysts to enhance the oxygen reduction reaction performance,” <i>Chemical Engineering Science</i>, vol. 324. Elsevier, 2026.","short":"C. Shi, S. Horta, M. Ibáñez, T. Kallio, P.R. Martínez-Alanis, X. Wang, A. Cabot, Chemical Engineering Science 324 (2026).","ista":"Shi C, Horta S, Ibáñez M, Kallio T, Martínez-Alanis PR, Wang X, Cabot A. 2026. Hydrogen induced palladium-based heterojunction electrocatalysts to enhance the oxygen reduction reaction performance. Chemical Engineering Science. 324, 123348.","mla":"Shi, Changwei, et al. “Hydrogen Induced Palladium-Based Heterojunction Electrocatalysts to Enhance the Oxygen Reduction Reaction Performance.” <i>Chemical Engineering Science</i>, vol. 324, 123348, Elsevier, 2026, doi:<a href=\"https://doi.org/10.1016/j.ces.2026.123348\">10.1016/j.ces.2026.123348</a>.","chicago":"Shi, Changwei, Sharona Horta, Maria Ibáñez, Tanja Kallio, Paulina R. Martínez-Alanis, Xiang Wang, and Andreu Cabot. “Hydrogen Induced Palladium-Based Heterojunction Electrocatalysts to Enhance the Oxygen Reduction Reaction Performance.” <i>Chemical Engineering Science</i>. Elsevier, 2026. <a href=\"https://doi.org/10.1016/j.ces.2026.123348\">https://doi.org/10.1016/j.ces.2026.123348</a>.","apa":"Shi, C., Horta, S., Ibáñez, M., Kallio, T., Martínez-Alanis, P. R., Wang, X., &#38; Cabot, A. (2026). Hydrogen induced palladium-based heterojunction electrocatalysts to enhance the oxygen reduction reaction performance. <i>Chemical Engineering Science</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.ces.2026.123348\">https://doi.org/10.1016/j.ces.2026.123348</a>"},"abstract":[{"text":"The oxygen reduction reaction (ORR) remains a critical bottleneck in fuel cells and metal-air batteries due to the lack of highly efficient electrocatalysts. Here, we report a simple strategy for synthesizing a palladium-based heterostructured electrocatalyst supported on a carbon nitride matrix (PdH-Pd@CN), which exhibits remarkable ORR activity with a half-wave potential of 0.91 V and excellent durability in 0.1 M KOH. Within the heterostructure, hydrogen intercalation expands the Pd lattice, while interstitial hydrogen doping facilitates charge transfer from Pd to H owing to their electronegativity difference. These synergistic effects modulate the electronic structure, thereby enhancing both activity and stability. When employed in Zn-air batteries, PdH-Pd@CN delivers a maximum power density of 176 mW cm− (Liu et al., 2025) and capacity of 805 mAh g− (Sun et al., 2021) Zn. These findings demonstrate the strong potential of PdH-Pd@CN as an efficient ORR electrocatalyst for next-generation metal-air batteries and related energy technologies.","lang":"eng"}],"scopus_import":"1","article_number":"123348"},{"volume":22,"PlanS_conform":"1","title":"A polyhedral structure controls programmable self-assembly","acknowledgement":"We thank B. Isaac and A. Tiano for their technical support with the electron microscopy and S. Waitukaitis for helpful comments on the manuscript. The TEM images were prepared and imaged at the Brandeis Electron Microscopy facility. This work was supported by the Gesellschaft für Forschungsförderung Niederösterreich under project FTI23-G-011 (M.C.H. and C.P.G.), the Brandeis University Materials Research Science and Engineering Center (MRSEC) under grant number NSF DMR-2011846 (T.E.V., D.H. and W.B.R.) and the Smith Family Foundation (W.B.R.). Open access funding provided by Institute of Science and Technology (IST Austria).","date_published":"2026-02-01T00:00:00Z","article_processing_charge":"Yes (via OA deal)","quality_controlled":"1","date_updated":"2026-07-27T10:59:15Z","month":"02","oa_version":"Published Version","citation":{"mla":"Hübl, Maximilian, et al. “A Polyhedral Structure Controls Programmable Self-Assembly.” <i>Nature Physics</i>, vol. 22, Springer Nature, 2026, pp. 294–301, doi:<a href=\"https://doi.org/10.1038/s41567-025-03120-3\">10.1038/s41567-025-03120-3</a>.","short":"M. Hübl, T.E. Videbæk, D. Hayakawa, W.B. Rogers, C.P. Goodrich, Nature Physics 22 (2026) 294–301.","ista":"Hübl M, Videbæk TE, Hayakawa D, Rogers WB, Goodrich CP. 2026. A polyhedral structure controls programmable self-assembly. Nature Physics. 22, 294–301.","apa":"Hübl, M., Videbæk, T. E., Hayakawa, D., Rogers, W. B., &#38; Goodrich, C. P. (2026). A polyhedral structure controls programmable self-assembly. <i>Nature Physics</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41567-025-03120-3\">https://doi.org/10.1038/s41567-025-03120-3</a>","chicago":"Hübl, Maximilian, Thomas E. Videbæk, Daichi Hayakawa, W. Benjamin Rogers, and Carl Peter Goodrich. “A Polyhedral Structure Controls Programmable Self-Assembly.” <i>Nature Physics</i>. Springer Nature, 2026. <a href=\"https://doi.org/10.1038/s41567-025-03120-3\">https://doi.org/10.1038/s41567-025-03120-3</a>.","ama":"Hübl M, Videbæk TE, Hayakawa D, Rogers WB, Goodrich CP. A polyhedral structure controls programmable self-assembly. <i>Nature Physics</i>. 2026;22:294-301. doi:<a href=\"https://doi.org/10.1038/s41567-025-03120-3\">10.1038/s41567-025-03120-3</a>","ieee":"M. Hübl, T. E. Videbæk, D. Hayakawa, W. B. Rogers, and C. P. Goodrich, “A polyhedral structure controls programmable self-assembly,” <i>Nature Physics</i>, vol. 22. Springer Nature, pp. 294–301, 2026."},"abstract":[{"text":"Modern experimental methods in programmable self-assembly make it possible to precisely design particle concentrations, shapes and interactions. However, more physical insight is needed before we can take full advantage of this vast design space to assemble nanostructures with complex form and function. Here we show how a substantial part of this design space can be quickly and comprehensively understood by identifying a class of thermodynamic constraints that act on it. These thermodynamic constraints form a high-dimensional convex polyhedron that determines which nanostructures can be assembled at high equilibrium yield and reveals limitations that govern the coexistence of structures. We validate our predictions through detailed, quantitative assembly experiments of nanoscale particles synthesized using DNA origami. Our results uncover physical relationships underpinning many-component programmable self-assembly in equilibrium and form the basis for robust inverse design, applicable to various systems from biological protein complexes to synthetic nanomachines.","lang":"eng"}],"scopus_import":"1","publisher":"Springer Nature","das_tickbox":"1","related_material":{"link":[{"relation":"press_release","description":"News on ISTA website","url":"https://ista.ac.at/en/news/behind-natures-blueprints/"}]},"OA_type":"hybrid","supplementarymaterial":"yes","publication_identifier":{"eissn":["1745-2481"],"issn":["1745-2473"]},"type":"journal_article","status":"public","year":"2026","date_created":"2026-01-20T10:02:19Z","article_type":"original","dataavailabilitystatement":"Design files and folding conditions of DNA origami used in this work are provided in the repository Nanobase68 and are accessible at https://nanobase.org/structures/247. All the TEM images and associated experimental data are available via Zenodo at https://doi.org/10.5281/zenodo.17314727 (ref. 70).\r\nStructure enumeration was performed using the Roly.jl27,71 (v.0.1.0) package developed by M.C.H. and C.P.G., which is available via GitHub at https://github.com/mxhbl/Roly.jl. Polyhedral computation and linear programming were performed using the freely available Convex.jl72 (v.0.16.4) package, Polyhedra.jl73 (v.0.7.8) package and cddlib63 (v.0.9.4) library. The example code reproducing the calculations done on the three rings and reconfigurable squares is available via GitHub at https://github.com/mxhbl/PolyhedralStructureOfSelfAssembly. An implementation of the lattice Monte Carlo sampler is available via GitHub at https://github.com/mxhbl/LatticeSampler. Fitting of the yield curves was achieved using the freely available Optim.jl74 (v.1.12.0) package.","file_date_updated":"2026-07-27T10:57:57Z","author":[{"full_name":"Hübl, Maximilian","id":"5eb8629e-15b2-11ec-abd3-e6f3e5e01f32","last_name":"Hübl","first_name":"Maximilian"},{"full_name":"Videbæk, Thomas E.","first_name":"Thomas E.","last_name":"Videbæk"},{"full_name":"Hayakawa, Daichi","last_name":"Hayakawa","first_name":"Daichi"},{"full_name":"Rogers, W. Benjamin","last_name":"Rogers","first_name":"W. Benjamin"},{"orcid":"0000-0002-1307-5074","first_name":"Carl Peter","last_name":"Goodrich","full_name":"Goodrich, Carl Peter","id":"EB352CD2-F68A-11E9-89C5-A432E6697425"}],"language":[{"iso":"eng"}],"ddc":["570","540"],"file":[{"file_size":2802534,"relation":"main_file","content_type":"application/pdf","date_updated":"2026-07-27T10:57:57Z","date_created":"2026-07-27T10:57:57Z","success":1,"file_id":"22417","creator":"dernst","checksum":"f4e3123d5d9dfcd22324e2c2de02e9a2","file_name":"2026_NaturePhysics_Huebl.pdf","access_level":"open_access"}],"project":[{"name":"Dynamically reconfigurable self-assembly with triangular DNA-origami bricks","_id":"8dd93da8-16d5-11f0-9cad-d2c70200d9a5","grant_number":"FTI23-G-011"}],"doi":"10.1038/s41567-025-03120-3","publication_status":"published","oa":1,"intvolume":"        22","department":[{"_id":"CaGo"},{"_id":"GradSch"}],"_id":"21006","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","page":"294-301","has_accepted_license":"1","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"researchdata_availability":"yes","day":"01","corr_author":"1","OA_place":"publisher","publication":"Nature Physics"},{"date_updated":"2026-07-27T10:42:02Z","quality_controlled":"1","month":"03","volume":10,"acknowledgement":"This work has received funding from the Swiss State Secretariat for Education, Research and Innovation (Contract No. MB22.00072). The Cosmic Dawn Center (DAWN) is funded by the Danish National Research Foundation (Grant No. DNRF140). The data products presented herein were retrieved from the DJA, which is an initiative of the Cosmic Dawn Center. This work is based on observations made with the NASA/ESA/CSA JWST. The data were obtained from MAST at the Space Telescope Science Institute, which is operated by the Association of Universities for Research in Astronomy, Inc., under NASA contract NAS 5-03127 for JWST. J.S.B. acknowledges support from the Simons Collaboration on Learning the Universe. J.S.B.’s simulations used resources from the Cambridge Service for Data Driven Discovery operated by the University of Cambridge Research Computing Service (www.csd3.cam.ac.uk), provided by Dell EMC and Intel using tier 2 funding from the Engineering and Physical Sciences Research Council (Capital Grant No. EP/P020259/1). K.F. gratefully acknowledges support from the National Science Foundation (Award No. 2006550). M.J.H. is fellow of the Knut & Alice Wallenberg Foundation. D.S. acknowledges support from the Science and Technology Facilities Council. U.S.K. was partially funded by the Summer Undergraduate Research Fellowships programme at Caltech.","article_processing_charge":"No","date_published":"2026-03-01T00:00:00Z","title":"A dense web of neutral gas in a galaxy proto-cluster post-reionization","supplementarymaterial":"yes","OA_type":"closed access","status":"public","publication_identifier":{"eissn":["2397-3366"]},"type":"journal_article","oa_version":"None","citation":{"ieee":"K. E. Heintz <i>et al.</i>, “A dense web of neutral gas in a galaxy proto-cluster post-reionization,” <i>Nature Astronomy</i>, vol. 10. Springer Nature, pp. 448–456, 2026.","ama":"Heintz KE, Bennett JS, Oesch PA, et al. A dense web of neutral gas in a galaxy proto-cluster post-reionization. <i>Nature Astronomy</i>. 2026;10:448-456. doi:<a href=\"https://doi.org/10.1038/s41550-025-02745-x\">10.1038/s41550-025-02745-x</a>","chicago":"Heintz, Kasper E., Jake S. Bennett, Pascal A. Oesch, Albert Sneppen, Douglas Rennehan, Clara L. Pollock, Joris Witstok, et al. “A Dense Web of Neutral Gas in a Galaxy Proto-Cluster Post-Reionization.” <i>Nature Astronomy</i>. Springer Nature, 2026. <a href=\"https://doi.org/10.1038/s41550-025-02745-x\">https://doi.org/10.1038/s41550-025-02745-x</a>.","apa":"Heintz, K. E., Bennett, J. S., Oesch, P. A., Sneppen, A., Rennehan, D., Pollock, C. L., … Covelo-Paz, A. (2026). A dense web of neutral gas in a galaxy proto-cluster post-reionization. <i>Nature Astronomy</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41550-025-02745-x\">https://doi.org/10.1038/s41550-025-02745-x</a>","short":"K.E. Heintz, J.S. Bennett, P.A. Oesch, A. Sneppen, D. Rennehan, C.L. Pollock, J. Witstok, R. Smit, S. Vejlgaard, C. Terp, U.S. Koca, G.B. Brammer, K. Finlator, M.J. Hayes, D. Sijacki, R.P. Naidu, J.J. Matthee, F. Valentino, N.R. Tanvir, P. Jakobsson, P. Laursen, D.J. Watson, R. Davé, L.C. Keating, A. Covelo-Paz, Nature Astronomy 10 (2026) 448–456.","ista":"Heintz KE, Bennett JS, Oesch PA, Sneppen A, Rennehan D, Pollock CL, Witstok J, Smit R, Vejlgaard S, Terp C, Koca US, Brammer GB, Finlator K, Hayes MJ, Sijacki D, Naidu RP, Matthee JJ, Valentino F, Tanvir NR, Jakobsson P, Laursen P, Watson DJ, Davé R, Keating LC, Covelo-Paz A. 2026. A dense web of neutral gas in a galaxy proto-cluster post-reionization. Nature Astronomy. 10, 448–456.","mla":"Heintz, Kasper E., et al. “A Dense Web of Neutral Gas in a Galaxy Proto-Cluster Post-Reionization.” <i>Nature Astronomy</i>, vol. 10, Springer Nature, 2026, pp. 448–56, doi:<a href=\"https://doi.org/10.1038/s41550-025-02745-x\">10.1038/s41550-025-02745-x</a>."},"scopus_import":"1","abstract":[{"text":"Galaxy clusters are the most massive, gravitationally bound structures in the Universe. They emerged through hierarchical structure formation of large-scale dark matter and baryon overdensities. Early galaxy ‘proto-clusters’ are believed to have substantially contributed to the cosmic star-formation rate density and served as ‘hotspots’ for the reionization of the intergalactic medium. Our understanding of the formation of these structures at the earliest cosmic epochs is, however, limited to sparse observations of their galaxy members or is based on phenomenological models and cosmological simulations. Here we report the detection of a large and coherent structure of neutral atomic hydrogen gas (H i) extending from a galaxy proto-cluster at redshift z = 5.4, one billion years after the Big Bang. The presence of this H i gas is revealed by strong damped Lyman-α absorption features observed in several background-galaxy spectra. Although the sight lines overall probe a large range in H i column densities, NHI = 1020 cm−2 to 1023.5 cm−2, they are similar across nearby sight lines, demonstrating that they probe the same dense neutral gas. This observation of a dense large-scale overdensity of cold neutral gas challenges current cosmological simulations and has strong implications for the reionization topology of the Universe.","lang":"eng"}],"das_tickbox":"1","publisher":"Springer Nature","author":[{"last_name":"Heintz","first_name":"Kasper E.","full_name":"Heintz, Kasper E."},{"full_name":"Bennett, Jake S.","last_name":"Bennett","first_name":"Jake S."},{"full_name":"Oesch, Pascal A.","first_name":"Pascal A.","last_name":"Oesch"},{"full_name":"Sneppen, Albert","last_name":"Sneppen","first_name":"Albert"},{"first_name":"Douglas","last_name":"Rennehan","full_name":"Rennehan, Douglas"},{"last_name":"Pollock","first_name":"Clara L.","full_name":"Pollock, Clara L."},{"first_name":"Joris","last_name":"Witstok","full_name":"Witstok, Joris"},{"full_name":"Smit, Renske","last_name":"Smit","first_name":"Renske"},{"first_name":"Simone","last_name":"Vejlgaard","full_name":"Vejlgaard, Simone"},{"last_name":"Terp","first_name":"Chamilla","full_name":"Terp, Chamilla"},{"full_name":"Koca, Umran S.","last_name":"Koca","first_name":"Umran S."},{"first_name":"Gabriel B.","last_name":"Brammer","full_name":"Brammer, Gabriel B."},{"last_name":"Finlator","first_name":"Kristian","full_name":"Finlator, Kristian"},{"full_name":"Hayes, Matthew J.","first_name":"Matthew J.","last_name":"Hayes"},{"first_name":"Debora","last_name":"Sijacki","full_name":"Sijacki, Debora"},{"full_name":"Naidu, Rohan P.","last_name":"Naidu","first_name":"Rohan P."},{"orcid":"0000-0003-2871-127X","first_name":"Jorryt J","last_name":"Matthee","full_name":"Matthee, Jorryt J","id":"7439a258-f3c0-11ec-9501-9df22fe06720"},{"first_name":"Francesco","last_name":"Valentino","full_name":"Valentino, Francesco"},{"first_name":"Nial R.","last_name":"Tanvir","full_name":"Tanvir, Nial R."},{"first_name":"Páll","last_name":"Jakobsson","full_name":"Jakobsson, Páll"},{"last_name":"Laursen","first_name":"Peter","full_name":"Laursen, Peter"},{"first_name":"Darach J.","last_name":"Watson","full_name":"Watson, Darach J."},{"first_name":"Romeel","last_name":"Davé","full_name":"Davé, Romeel"},{"first_name":"Laura C.","last_name":"Keating","full_name":"Keating, Laura C."},{"last_name":"Covelo-Paz","first_name":"Alba","full_name":"Covelo-Paz, Alba"}],"language":[{"iso":"eng"}],"dataavailabilitystatement":"The JWST imaging and spectroscopic data are publicly available via the JWST MAST archive at https://mast.stsci.edu. The relevant programme and source IDs for each target are provided in Table 1. The reduced spectroscopic data are all available via DJA at https://dawn-cph.github.io/dja/. Version 3 was used for this work.\r\nThe data have been processed using the following public software codes: grizli v.1.9.11(60) and MsaExp v.0.6.17(32).","intvolume":"        10","doi":"10.1038/s41550-025-02745-x","publication_status":"published","year":"2026","article_type":"original","date_created":"2026-01-11T23:01:34Z","researchdata_availability":"yes","day":"01","publication":"Nature Astronomy","department":[{"_id":"JoMa"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"20975","page":"448-456"},{"intvolume":"       400","publication_status":"published","doi":"10.1016/j.agee.2026.110219","language":[{"iso":"eng"}],"author":[{"full_name":"Rodríguez, Paula","last_name":"Rodríguez","first_name":"Paula"},{"full_name":"Cruz Alonso, Verónica","first_name":"Verónica","last_name":"Cruz Alonso"},{"full_name":"Romano, Silvina","first_name":"Silvina","last_name":"Romano"},{"last_name":"Bustamante","first_name":"Gimena","full_name":"Bustamante, Gimena"},{"last_name":"Soler Schaller","first_name":"Rosina Matilde","id":"9e668447-8c32-11ed-b0c7-8dc2d7b80803","full_name":"Soler Schaller, Rosina Matilde"}],"dataavailabilitystatement":"The authors do not have permission to share data.","article_type":"original","date_created":"2026-01-25T23:01:38Z","year":"2026","publication":"Agriculture, Ecosystems and Environment","day":"15","researchdata_availability":"no","_id":"21036","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","department":[{"_id":"NiBa"}],"month":"04","date_updated":"2026-07-27T11:01:30Z","quality_controlled":"1","article_processing_charge":"No","date_published":"2026-04-15T00:00:00Z","acknowledgement":"We would like to thank Guillermo Ortiz (CADIC-CONICET) for his invaluable support in the field and lab work. We are extremely grateful to the ranchers for kindly allowing us access to their fields. Funding for this work was provided by the Argentine National Scientific and Technical Research Council (CONICET) and the National Agency for Scientific Promotion through project PICT 2019–675. PR was also granted the Mobility Scholarship Program 2025 between Andalusian and Ibero-American Universities (AUIP). VCA is co-supported by the Community of Madrid under the 2024 call for the ‘César Nombela’ research talent attraction programme (2024-T1/ECO-31335).","title":"Context-dependent effects of livestock grazing on forest attributes and ecosystem multifunctionality in Nothofagus forests","volume":400,"status":"public","type":"journal_article","publication_identifier":{"issn":["0167-8809"]},"OA_type":"closed access","supplementarymaterial":"yes","das_tickbox":"1","publisher":"Elsevier","citation":{"ama":"Rodríguez P, Cruz Alonso V, Romano S, Bustamante G, Soler Schaller RM. Context-dependent effects of livestock grazing on forest attributes and ecosystem multifunctionality in Nothofagus forests. <i>Agriculture, Ecosystems and Environment</i>. 2026;400. doi:<a href=\"https://doi.org/10.1016/j.agee.2026.110219\">10.1016/j.agee.2026.110219</a>","ieee":"P. Rodríguez, V. Cruz Alonso, S. Romano, G. Bustamante, and R. M. Soler Schaller, “Context-dependent effects of livestock grazing on forest attributes and ecosystem multifunctionality in Nothofagus forests,” <i>Agriculture, Ecosystems and Environment</i>, vol. 400. Elsevier, 2026.","mla":"Rodríguez, Paula, et al. “Context-Dependent Effects of Livestock Grazing on Forest Attributes and Ecosystem Multifunctionality in Nothofagus Forests.” <i>Agriculture, Ecosystems and Environment</i>, vol. 400, 110219, Elsevier, 2026, doi:<a href=\"https://doi.org/10.1016/j.agee.2026.110219\">10.1016/j.agee.2026.110219</a>.","ista":"Rodríguez P, Cruz Alonso V, Romano S, Bustamante G, Soler Schaller RM. 2026. Context-dependent effects of livestock grazing on forest attributes and ecosystem multifunctionality in Nothofagus forests. Agriculture, Ecosystems and Environment. 400, 110219.","short":"P. Rodríguez, V. Cruz Alonso, S. Romano, G. Bustamante, R.M. Soler Schaller, Agriculture, Ecosystems and Environment 400 (2026).","apa":"Rodríguez, P., Cruz Alonso, V., Romano, S., Bustamante, G., &#38; Soler Schaller, R. M. (2026). Context-dependent effects of livestock grazing on forest attributes and ecosystem multifunctionality in Nothofagus forests. <i>Agriculture, Ecosystems and Environment</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.agee.2026.110219\">https://doi.org/10.1016/j.agee.2026.110219</a>","chicago":"Rodríguez, Paula, Verónica Cruz Alonso, Silvina Romano, Gimena Bustamante, and Rosina Matilde Soler Schaller. “Context-Dependent Effects of Livestock Grazing on Forest Attributes and Ecosystem Multifunctionality in Nothofagus Forests.” <i>Agriculture, Ecosystems and Environment</i>. Elsevier, 2026. <a href=\"https://doi.org/10.1016/j.agee.2026.110219\">https://doi.org/10.1016/j.agee.2026.110219</a>."},"abstract":[{"lang":"eng","text":"Forests under livestock grazing sustain important ecosystem services but face potential trade-offs between production and ecological integrity. While the effects of grazing on individual forest attributes are well documented, their integrated consequences remain poorly understood, particularly in temperate forest ecosystems. We evaluated the combined influence of livestock grazing intensity and canopy cover on individual attributes and ecosystem multifunctionality in native Nothofagus forests of Tierra del Fuego, Argentina. Across eight ranches spanning two agroecological regions (Ecotone and Mountain Range), we quantified forest regeneration, understorey richness and biomass, and soil properties, integrating them into a multifunctionality index. Using generalized linear mixed models, we found strong context-dependence: in the Mountain Range, higher grazing intensity reduced seedling and sapling density, organic matter content, coarse woody debris, and overall multifunctionality. In the Ecotone, these effects of livestock use intensity were attenuated, and canopy cover diminished sapling density and multifunctionality, but moderate cover enhanced understorey. Our results extend multifunctionality research from grazed grasslands to grazed temperate forests and show that ecological responses and trade-offs vary across landscape units. We conclude that the Mountain Range is more vulnerable to grazing, requiring stricter management, whereas the Ecotone retains greater capacity to sustain multifunctionality under controlled livestock use intensity. These findings underscore the importance of region-specific silvopastoral strategies that reconcile food production with forest conservation in southern Patagonia and comparable temperate forest landscapes worldwide."}],"article_number":"110219","scopus_import":"1","oa_version":"None"},{"page":"34-55","ec_funded":1,"department":[{"_id":"JaMa"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"21132","OA_place":"repository","publication":"Kinetic and Related Models","day":"01","date_created":"2026-02-01T23:01:43Z","article_type":"original","year":"2026","project":[{"call_identifier":"H2020","name":"IST-BRIDGE: International postdoctoral program","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c","grant_number":"101034413"}],"doi":"10.3934/krm.2025020","publication_status":"published","oa":1,"intvolume":"        20","author":[{"last_name":"Brigati","first_name":"Giovanni","full_name":"Brigati, Giovanni","id":"63ff57e8-1fbb-11ee-88f2-f558ffc59cf1"},{"full_name":"Lörler, Francis","first_name":"Francis","last_name":"Lörler"},{"first_name":"Lihan","last_name":"Wang","full_name":"Wang, Lihan"}],"language":[{"iso":"eng"}],"publisher":"American Institute of Mathematical Sciences","das_tickbox":"1","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2412.10890"}],"oa_version":"Preprint","citation":{"apa":"Brigati, G., Lörler, F., &#38; Wang, L. (2026). Hypocoercivity meets lifts. <i>Kinetic and Related Models</i>. American Institute of Mathematical Sciences. <a href=\"https://doi.org/10.3934/krm.2025020\">https://doi.org/10.3934/krm.2025020</a>","chicago":"Brigati, Giovanni, Francis Lörler, and Lihan Wang. “Hypocoercivity Meets Lifts.” <i>Kinetic and Related Models</i>. American Institute of Mathematical Sciences, 2026. <a href=\"https://doi.org/10.3934/krm.2025020\">https://doi.org/10.3934/krm.2025020</a>.","mla":"Brigati, Giovanni, et al. “Hypocoercivity Meets Lifts.” <i>Kinetic and Related Models</i>, vol. 20, American Institute of Mathematical Sciences, 2026, pp. 34–55, doi:<a href=\"https://doi.org/10.3934/krm.2025020\">10.3934/krm.2025020</a>.","ista":"Brigati G, Lörler F, Wang L. 2026. Hypocoercivity meets lifts. Kinetic and Related Models. 20, 34–55.","short":"G. Brigati, F. Lörler, L. Wang, Kinetic and Related Models 20 (2026) 34–55.","ieee":"G. Brigati, F. Lörler, and L. Wang, “Hypocoercivity meets lifts,” <i>Kinetic and Related Models</i>, vol. 20. American Institute of Mathematical Sciences, pp. 34–55, 2026.","ama":"Brigati G, Lörler F, Wang L. Hypocoercivity meets lifts. <i>Kinetic and Related Models</i>. 2026;20:34-55. doi:<a href=\"https://doi.org/10.3934/krm.2025020\">10.3934/krm.2025020</a>"},"abstract":[{"text":"We unify the variational hypocoercivity framework established by D. Albritton, S. Armstrong, J.-C. Mourrat, and M. Novack [2], with the notion of second-order lifts of reversible diffusion processes, recently introduced by A. Eberle and the second author [30]. We give an abstract, yet fully constructive, presentation of the theory, so that it can be applied to a large class of linear kinetic equations. As this hypocoercivity technique does not twist the reference norm, we can recover accurate and sharp convergence rates in various models. Among those, adaptive Langevin dynamics (ALD) is discussed in full detail and we show that for near-quadratic potentials, with suitable choices of parameters, it is a near-optimal second-order lift of the overdamped Langevin dynamics. As a further consequence, we observe that the Generalised Langevin Equation (GLE) is also a second-order lift, as the standard (kinetic) Langevin dynamics are, of the overdamped Langevin dynamics. Then, convergence of (GLE) cannot exceed ballistic speed, i.e. the square root of the rate of the overdamped regime. We illustrate this phenomenon with explicit computations in a benchmark Gaussian case.","lang":"eng"}],"scopus_import":"1","publication_identifier":{"eissn":["1937-5077"],"issn":["1937-5093"]},"type":"journal_article","status":"public","OA_type":"green","title":"Hypocoercivity meets lifts","acknowledgement":"We would like to thank Andreas Eberle and Gabriel Stoltz for many helpful discussions. GB\r\nhas received funding from the European Union Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie grant agreement No 101034413. FL wurde gefördert durch die Deutsche Forschungsgemeinschaft (DFG) im Rahmen der Exzellenzstrategie des Bundes und der Länder – GZ2047/1, Projekt-ID 390685813. LW is supported by the National Science Foundation via grant DMS-2407166. He is also indebted to the Mathematical Sciences department at Carnegie Mellon University for partly supporting his visit to Europe in July 2024. Part of this work was completed when GB and LW were visiting the Institute for Applied Mathematics in Bonn. GB and LW would like to thank IAM for their hospitality.","date_published":"2026-04-01T00:00:00Z","arxiv":1,"article_processing_charge":"No","volume":20,"month":"04","external_id":{"arxiv":["2412.10890"]},"quality_controlled":"1","date_updated":"2026-07-27T11:06:19Z"},{"das_tickbox":"1","publisher":"Wiley","oa_version":"None","scopus_import":"1","citation":{"ista":"Tang H, Smoljan A, Zou M, Zhang Y, Lu KJ, Friml J. 2026. The miniW domain directs polarized membrane localization of non-canonical PINs in Marchantia polymorpha. Plant Cell and Environment. 49(3), 1505–1508.","short":"H. Tang, A. Smoljan, M. Zou, Y. Zhang, K.J. Lu, J. Friml, Plant Cell and Environment 49 (2026) 1505–1508.","mla":"Tang, Han, et al. “The MiniW Domain Directs Polarized Membrane Localization of Non-Canonical PINs in Marchantia Polymorpha.” <i>Plant Cell and Environment</i>, vol. 49, no. 3, Wiley, 2026, pp. 1505–08, doi:<a href=\"https://doi.org/10.1111/pce.70295\">10.1111/pce.70295</a>.","chicago":"Tang, Han, Adrijana Smoljan, Minxia Zou, Yuzhou Zhang, Kuan Ju Lu, and Jiří Friml. “The MiniW Domain Directs Polarized Membrane Localization of Non-Canonical PINs in Marchantia Polymorpha.” <i>Plant Cell and Environment</i>. Wiley, 2026. <a href=\"https://doi.org/10.1111/pce.70295\">https://doi.org/10.1111/pce.70295</a>.","apa":"Tang, H., Smoljan, A., Zou, M., Zhang, Y., Lu, K. J., &#38; Friml, J. (2026). The miniW domain directs polarized membrane localization of non-canonical PINs in Marchantia polymorpha. <i>Plant Cell and Environment</i>. Wiley. <a href=\"https://doi.org/10.1111/pce.70295\">https://doi.org/10.1111/pce.70295</a>","ama":"Tang H, Smoljan A, Zou M, Zhang Y, Lu KJ, Friml J. The miniW domain directs polarized membrane localization of non-canonical PINs in Marchantia polymorpha. <i>Plant Cell and Environment</i>. 2026;49(3):1505-1508. doi:<a href=\"https://doi.org/10.1111/pce.70295\">10.1111/pce.70295</a>","ieee":"H. Tang, A. Smoljan, M. Zou, Y. Zhang, K. J. Lu, and J. Friml, “The miniW domain directs polarized membrane localization of non-canonical PINs in Marchantia polymorpha,” <i>Plant Cell and Environment</i>, vol. 49, no. 3. Wiley, pp. 1505–1508, 2026."},"abstract":[{"lang":"eng","text":"This study demonstrates that Marchantia non-canonical PINs are predominantly localized to the plasma membrane, with MpPINX and MpPINW exhibiting asymmetric distribution.\r\nA newly identified miniW domain within the MpPINW hydrophilic loop governs subcellular trafficking and asymmetric PM localization of non-canonical PINs in Marchantia."}],"status":"public","publication_identifier":{"eissn":["1365-3040"],"issn":["0140-7791"]},"type":"journal_article","supplementarymaterial":"yes","OA_type":"closed access","acknowledgement":"The authors sincerely thank Dr. Shutang Tan for experimental support and Dr. Barbara Kloeckener Gruissem for critical reading and constructive advice on the manuscript. This study was supported by the European Research Council Advanced Grant (ETAP-742985 to H.T. and J.F.), by the Ministry of Science and Technology (grant 112-2636-B-005-001- to K.-J.L.), and by the Ministry of Education (grant MOE-109-YSFAG-0006-001-P1 to K.-J.L.).","article_processing_charge":"No","date_published":"2026-03-01T00:00:00Z","title":"The miniW domain directs polarized membrane localization of non-canonical PINs in Marchantia polymorpha","volume":49,"month":"03","date_updated":"2026-07-27T10:27:47Z","quality_controlled":"1","external_id":{"pmid":["41340422"]},"page":"1505-1508","pmid":1,"issue":"3","department":[{"_id":"JiFr"}],"ec_funded":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"20818","publication":"Plant Cell and Environment","researchdata_availability":"upon request","day":"01","article_type":"comment","date_created":"2025-12-14T23:02:05Z","year":"2026","intvolume":"        49","doi":"10.1111/pce.70295","project":[{"grant_number":"742985","_id":"261099A6-B435-11E9-9278-68D0E5697425","name":"Tracing Evolution of Auxin Transport and Polarity in Plants","call_identifier":"H2020"}],"publication_status":"published","author":[{"id":"19BDF720-25A0-11EA-AC6E-928F3DDC885E","full_name":"Tang, Han","last_name":"Tang","first_name":"Han","orcid":"0000-0001-6152-6637"},{"last_name":"Smoljan","first_name":"Adrijana","full_name":"Smoljan, Adrijana","id":"cced8a85-223e-11ed-af04-b0596c55053b"},{"id":"5c243f41-03f3-11ec-841c-96faf48a7ef9","full_name":"Zou, Minxia","last_name":"Zou","first_name":"Minxia"},{"orcid":"0000-0003-2627-6956","last_name":"Zhang","first_name":"Yuzhou","full_name":"Zhang, Yuzhou","id":"3B6137F2-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Lu, Kuan Ju","last_name":"Lu","first_name":"Kuan Ju"},{"full_name":"Friml, Jiří","id":"4159519E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8302-7596","last_name":"Friml","first_name":"Jiří"}],"language":[{"iso":"eng"}],"dataavailabilitystatement":"The data that support the findings of this study are available from the corresponding author upon reasonable request."},{"das_tickbox":"1","publisher":"Wiley","abstract":[{"text":"1. Collective behaviours are a fascinating study area due to the emergent properties that can only arise in groups of interacting individuals. However, their quantitative study is often impaired by technical difficulties, creating either low-quality and sparse data or impractical data amounts, particularly when capturing large groups over long periods of time. Common challenges arise from recording group members with as little obscuring of each other as possible, as well as in generating manageable data amounts with as high as possible information content.\r\n2. We here provide a multicomponent system that allows to record, analyse and simulate the long-term spatiotemporal activity patterns of insect collectives, especially ant colonies. Our Ant Observing System, ALTAA, comprises a flat-nest design to prevent occlusion of individuals, a recording system running on a low-power single-board-computer, and a set of computer programmes performing quantitative analyses to guide the formation and validation of rules underlying the observed collective patterns. Our system is scalable in that it allows parallel, continuous observation of a high number of colonies using low memory space, with colony maintenance requirements (e.g. feeding, nest humidity) being achieved at lowest possible disturbance by the experimenter.\r\n3. We showcase the potential of the system in a study using the black garden ant, Lasius niger, where we analyse the spatiotemporal effects of different group sizes (1, 6, 10 ants), brood (larvae) presence or absence, as well as of different nest geometries, over a period of 1 week. We show that the ants' motion activity has a weak periodicity in the range of 20 to 120 min promoted by larval presence, and that ants are spatially attracted to their larvae, the water source and the walls. We also find that the presence of nestmates lowers an individual ant's motion activity. Observed data are compared to simulations of the temporal activity of the ants.\r\n4. ALTAA provides a powerful toolkit to quantify and interpret spatial and temporal collective activity patterns in (social) insects over extended periods.","lang":"eng"}],"scopus_import":"1","citation":{"apa":"Oh, J., &#38; Cremer, S. (2026). ALTAA: Analysis of long-term activity patterns in ant colonies. <i>Methods in Ecology and Evolution</i>. Wiley. <a href=\"https://doi.org/10.1111/2041-210x.70277\">https://doi.org/10.1111/2041-210x.70277</a>","chicago":"Oh, Jinook, and Sylvia Cremer. “ALTAA: Analysis of Long-Term Activity Patterns in Ant Colonies.” <i>Methods in Ecology and Evolution</i>. Wiley, 2026. <a href=\"https://doi.org/10.1111/2041-210x.70277\">https://doi.org/10.1111/2041-210x.70277</a>.","mla":"Oh, Jinook, and Sylvia Cremer. “ALTAA: Analysis of Long-Term Activity Patterns in Ant Colonies.” <i>Methods in Ecology and Evolution</i>, vol. 17, no. 4, Wiley, 2026, pp. 1218–34, doi:<a href=\"https://doi.org/10.1111/2041-210x.70277\">10.1111/2041-210x.70277</a>.","ista":"Oh J, Cremer S. 2026. ALTAA: Analysis of long-term activity patterns in ant colonies. Methods in Ecology and Evolution. 17(4), 1218–1234.","short":"J. Oh, S. Cremer, Methods in Ecology and Evolution 17 (2026) 1218–1234.","ieee":"J. Oh and S. Cremer, “ALTAA: Analysis of long-term activity patterns in ant colonies,” <i>Methods in Ecology and Evolution</i>, vol. 17, no. 4. Wiley, pp. 1218–1234, 2026.","ama":"Oh J, Cremer S. ALTAA: Analysis of long-term activity patterns in ant colonies. <i>Methods in Ecology and Evolution</i>. 2026;17(4):1218-1234. doi:<a href=\"https://doi.org/10.1111/2041-210x.70277\">10.1111/2041-210x.70277</a>"},"oa_version":"Published Version","status":"public","type":"journal_article","publication_identifier":{"eissn":["2041-210X"]},"supplementarymaterial":"yes","OA_type":"gold","date_published":"2026-04-01T00:00:00Z","article_processing_charge":"Yes","acknowledgement":"We thank Harikrishnan Rajendran for discussion. This project has received funding from the European Research Council (ERC) under the European Union's Horizon 2020 Research and Innovation Programme (grant agreement No. 771402; EPIDEMICSonCHIP to S.C.). Open Access funding provided by Institute of Science and Technology Austria/KEMÖ.","PlanS_conform":"1","title":"ALTAA: Analysis of long-term activity patterns in ant colonies","volume":17,"biorxivid":1,"month":"04","quality_controlled":"1","date_updated":"2026-07-27T11:31:10Z","external_id":{"biorxivid":["10.1101/2025.08.11.669637"]},"tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"has_accepted_license":"1","page":"1218-1234","_id":"21453","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","issue":"4","department":[{"_id":"SyCr"}],"ec_funded":1,"publication":"Methods in Ecology and Evolution","OA_place":"publisher","corr_author":"1","day":"01","researchdata_availability":"yes","article_type":"original","date_created":"2026-03-15T23:01:36Z","DOAJ_listed":"1","year":"2026","intvolume":"        17","publication_status":"published","oa":1,"doi":"10.1111/2041-210x.70277","file":[{"date_created":"2026-07-27T11:30:53Z","file_id":"22422","success":1,"checksum":"5f2a44daa57f757c8d5226bb3d80680b","creator":"dernst","access_level":"open_access","file_name":"2026_MethodsEcologyEvolution_Oh.pdf","file_size":7154332,"content_type":"application/pdf","relation":"main_file","date_updated":"2026-07-27T11:30:53Z"}],"project":[{"call_identifier":"H2020","name":"Epidemics in ant societies on a chip","_id":"2649B4DE-B435-11E9-9278-68D0E5697425","grant_number":"771402"}],"language":[{"iso":"eng"}],"ddc":["570"],"author":[{"id":"403169A4-080F-11EA-9993-BF3F3DDC885E","full_name":"Oh, Jinook","last_name":"Oh","first_name":"Jinook","orcid":"0000-0001-7425-2372"},{"id":"2F64EC8C-F248-11E8-B48F-1D18A9856A87","full_name":"Cremer, Sylvia","first_name":"Sylvia","last_name":"Cremer","orcid":"0000-0002-2193-3868"}],"file_date_updated":"2026-07-27T11:30:53Z","dataavailabilitystatement":"Data available via https://doi.org/10.5281/zenodo.16893940 (Oh, 2025), and the code is available at Github, https://github.com/jinook0707/CremerGroupApp."},{"has_accepted_license":"1","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"page":"424-429","department":[{"_id":"GradSch"},{"_id":"BjHo"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"21295","publication":"Nature Physics","OA_place":"publisher","corr_author":"1","researchdata_availability":"yes","day":"01","article_type":"original","date_created":"2026-02-17T11:38:41Z","year":"2026","intvolume":"        22","project":[{"_id":"238598C6-32DE-11EA-91FC-C7463DDC885E","grant_number":"662960","name":"Revisiting the Turbulence Problem Using Statistical Mechanics"}],"doi":"10.1038/s41567-025-03166-3","file":[{"success":1,"file_id":"22420","date_created":"2026-07-27T11:12:46Z","file_name":"2026_NaturePhysics_Yang.pdf","access_level":"open_access","creator":"dernst","checksum":"0636abba74896c467a7237411fa2369b","relation":"main_file","date_updated":"2026-07-27T11:12:46Z","content_type":"application/pdf","file_size":5152735}],"publication_status":"published","oa":1,"author":[{"orcid":"0000-0002-4843-6853","first_name":"Bowen","last_name":"Yang","full_name":"Yang, Bowen","id":"71b6ff4b-15b2-11ec-abd3-aef6b028cf7e"},{"last_name":"Zhuang","first_name":"Yi","id":"3677B57C-F248-11E8-B48F-1D18A9856A87","full_name":"Zhuang, Yi"},{"id":"66E74FA2-D8BF-11E9-8249-8DE2E5697425","full_name":"Yalniz, Gökhan","first_name":"Gökhan","last_name":"Yalniz","orcid":"0000-0002-8490-9312"},{"first_name":"Mukund","last_name":"Vasudevan","full_name":"Vasudevan, Mukund","id":"3C5A959A-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Marensi, Elena","id":"0BE7553A-1004-11EA-B805-18983DDC885E","orcid":"0000-0001-7173-4923","first_name":"Elena","last_name":"Marensi"},{"id":"3A374330-F248-11E8-B48F-1D18A9856A87","full_name":"Hof, Björn","last_name":"Hof","first_name":"Björn","orcid":"0000-0003-2057-2754"}],"language":[{"iso":"eng"}],"ddc":["532"],"file_date_updated":"2026-07-27T11:12:46Z","dataavailabilitystatement":"Source data are available via Zenodo at https://doi.org/10.5281/zenodo.17514317 (ref. 51). The numerical simulations were carried out using the open-source codes openpipeflow41 and nsPipeflow45.","das_tickbox":"1","publisher":"Springer Nature","oa_version":"Published Version","citation":{"ieee":"B. Yang, Y. Zhuang, G. Yalniz, M. Vasudevan, E. Marensi, and B. Hof, “Discontinuous transition to shear flow turbulence,” <i>Nature Physics</i>, vol. 22. Springer Nature, pp. 424–429, 2026.","ama":"Yang B, Zhuang Y, Yalniz G, Vasudevan M, Marensi E, Hof B. Discontinuous transition to shear flow turbulence. <i>Nature Physics</i>. 2026;22:424-429. doi:<a href=\"https://doi.org/10.1038/s41567-025-03166-3\">10.1038/s41567-025-03166-3</a>","apa":"Yang, B., Zhuang, Y., Yalniz, G., Vasudevan, M., Marensi, E., &#38; Hof, B. (2026). Discontinuous transition to shear flow turbulence. <i>Nature Physics</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41567-025-03166-3\">https://doi.org/10.1038/s41567-025-03166-3</a>","chicago":"Yang, Bowen, Yi Zhuang, Gökhan Yalniz, Mukund Vasudevan, Elena Marensi, and Björn Hof. “Discontinuous Transition to Shear Flow Turbulence.” <i>Nature Physics</i>. Springer Nature, 2026. <a href=\"https://doi.org/10.1038/s41567-025-03166-3\">https://doi.org/10.1038/s41567-025-03166-3</a>.","mla":"Yang, Bowen, et al. “Discontinuous Transition to Shear Flow Turbulence.” <i>Nature Physics</i>, vol. 22, Springer Nature, 2026, pp. 424–29, doi:<a href=\"https://doi.org/10.1038/s41567-025-03166-3\">10.1038/s41567-025-03166-3</a>.","short":"B. Yang, Y. Zhuang, G. Yalniz, M. Vasudevan, E. Marensi, B. Hof, Nature Physics 22 (2026) 424–429.","ista":"Yang B, Zhuang Y, Yalniz G, Vasudevan M, Marensi E, Hof B. 2026. Discontinuous transition to shear flow turbulence. Nature Physics. 22, 424–429."},"scopus_import":"1","abstract":[{"text":"Depending on the type of flow, the transition to turbulence can take one of two forms: either turbulence arises from a sequence of instabilities or from the spatial proliferation of transiently chaotic domains, a process analogous to directed percolation. The former scenario is commonly referred to as a supercritical transition and frequently encountered in flows destabilized by body forces, whereas the latter subcritical transition is common in shear flows. Both cases are inherently continuous in a sense that the transformation from ordered laminar to fully turbulent fluid motion is only accomplished gradually with flow speed. Here we show that these established transition types do not account for the more general setting of shear flows subject to body forces. The combination of the two continuous scenarios leads to the attenuation of spatial coupling; with increasing forcing amplitude, the transition becomes increasingly sharp and eventually discontinuous. We argue that the suppression of laminar–turbulent coexistence and the approach towards a discontinuous phase transition potentially apply to a broad range of situations including flows subject to, for example, buoyancy, centrifugal or electromagnetic forces.","lang":"eng"}],"status":"public","publication_identifier":{"eissn":["1745-2481"],"issn":["1745-2473"]},"type":"journal_article","OA_type":"hybrid","supplementarymaterial":"yes","acknowledgement":"The work was supported by the Simons Foundation (grant number 662960, to B.H.). Open access funding provided by Institute of Science and Technology (IST Austria).","date_published":"2026-03-01T00:00:00Z","arxiv":1,"article_processing_charge":"Yes (via OA deal)","PlanS_conform":"1","title":"Discontinuous transition to shear flow turbulence","volume":22,"month":"03","quality_controlled":"1","date_updated":"2026-07-27T11:13:48Z","external_id":{"arxiv":["2311.11474"]}},{"researchdata_availability":"no","day":"01","corr_author":"1","OA_place":"publisher","publication":"New Phytologist","issue":"3","department":[{"_id":"JiFr"},{"_id":"GradSch"}],"_id":"21483","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","pmid":1,"page":"1483-1491","has_accepted_license":"1","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"file_date_updated":"2026-07-27T11:46:25Z","author":[{"last_name":"Babic","first_name":"David","id":"db566d23-f6e0-11ea-865d-e6f270e968e7","full_name":"Babic, David"},{"first_name":"Milan","last_name":"Zupunski","full_name":"Zupunski, Milan","id":"f6a21fce-573e-11f0-a150-a8d96aee2539"},{"id":"4159519E-F248-11E8-B48F-1D18A9856A87","full_name":"Friml, Jiří","first_name":"Jiří","last_name":"Friml","orcid":"0000-0002-8302-7596"}],"language":[{"iso":"eng"}],"ddc":["580"],"file":[{"content_type":"application/pdf","relation":"main_file","date_updated":"2026-07-27T11:46:25Z","file_size":1708392,"access_level":"open_access","file_name":"2026_NewPhytologist_Babic.pdf","checksum":"67513dde983631bed9613fdaadbbee06","creator":"dernst","file_id":"22424","success":1,"date_created":"2026-07-27T11:46:25Z"}],"doi":"10.1111/nph.71072","oa":1,"publication_status":"published","intvolume":"       250","year":"2026","date_created":"2026-03-23T14:59:06Z","article_type":"original","OA_type":"hybrid","supplementarymaterial":"no","publication_identifier":{"issn":["0028-646X"],"eissn":["1469-8137"]},"type":"journal_article","status":"public","oa_version":"Published Version","citation":{"ama":"Babic D, Zupunski M, Friml J. Imaging and genetic toolbox to study Arabidopsis embryogenesis. <i>New Phytologist</i>. 2026;250(3):1483-1491. doi:<a href=\"https://doi.org/10.1111/nph.71072\">10.1111/nph.71072</a>","ieee":"D. Babic, M. Zupunski, and J. Friml, “Imaging and genetic toolbox to study Arabidopsis embryogenesis,” <i>New Phytologist</i>, vol. 250, no. 3. Wiley, pp. 1483–1491, 2026.","ista":"Babic D, Zupunski M, Friml J. 2026. Imaging and genetic toolbox to study Arabidopsis embryogenesis. New Phytologist. 250(3), 1483–1491.","short":"D. Babic, M. Zupunski, J. Friml, New Phytologist 250 (2026) 1483–1491.","mla":"Babic, David, et al. “Imaging and Genetic Toolbox to Study Arabidopsis Embryogenesis.” <i>New Phytologist</i>, vol. 250, no. 3, Wiley, 2026, pp. 1483–91, doi:<a href=\"https://doi.org/10.1111/nph.71072\">10.1111/nph.71072</a>.","chicago":"Babic, David, Milan Zupunski, and Jiří Friml. “Imaging and Genetic Toolbox to Study Arabidopsis Embryogenesis.” <i>New Phytologist</i>. Wiley, 2026. <a href=\"https://doi.org/10.1111/nph.71072\">https://doi.org/10.1111/nph.71072</a>.","apa":"Babic, D., Zupunski, M., &#38; Friml, J. (2026). Imaging and genetic toolbox to study Arabidopsis embryogenesis. <i>New Phytologist</i>. Wiley. <a href=\"https://doi.org/10.1111/nph.71072\">https://doi.org/10.1111/nph.71072</a>"},"abstract":[{"lang":"eng","text":"Embryogenesis in the model plant Arabidopsis thaliana provides a framework for understanding how cell polarity and patterning coordinate with hormonal signalling to establish the plant body plan. Following fertilisation, the zygote divides asymmetrically to generate apical and basal lineages, establishing the apical–basal axis that defines future shoot and root poles. Genetic and molecular analyses of classical mutants including gnom, monopteros (mp), bodenlos (bdl) and topless revealed that localised auxin biosynthesis, directional transport and downstream transcriptional responses are central to apical–basal axis establishment and organ initiation. The main components of this regulation are polarly localised PIN auxin transporters and downstream modules involving MONOPTEROS and WUSCHEL-RELATED HOMEOBOX transcription factors. Advances in microscopy have transformed the study of Arabidopsis embryogenesis: fluorescence-compatible clearing reagents and three-dimensional reconstructions now permit quantitative analyses of cell geometry, division orientation, and cytoskeletal dynamics. Live ovule imaging setups with confocal laser scanning and multiphoton microscopes enable real-time observation of embryo development, while laser-assisted cell ablation can be used to probe cell-to-cell communication and fate plasticity. Together, these methodological breakthroughs position Arabidopsis embryos as a prime model for dissecting the chemical and biophysical cues that shape plant development."}],"scopus_import":"1","publisher":"Wiley","das_tickbox":"0","external_id":{"pmid":["41808651"]},"date_updated":"2026-07-27T11:47:24Z","quality_controlled":"1","month":"05","volume":250,"title":"Imaging and genetic toolbox to study Arabidopsis embryogenesis","PlanS_conform":"1","acknowledgement":"The authors would like to acknowledge the many colleagues whose valuable contributions to the field could not be included in this review due to space limitations and reference constraints. Open Access funding provided by Institute of Science and Technology Austria/KEMÖ.","date_published":"2026-05-01T00:00:00Z","article_processing_charge":"Yes (via OA deal)"},{"researchdata_availability":"no","day":"01","OA_place":"publisher","corr_author":"1","publication":"Genetics","issue":"4","department":[{"_id":"MaRo"}],"_id":"21484","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","pmid":1,"has_accepted_license":"1","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"file_date_updated":"2026-07-27T11:54:00Z","dataavailabilitystatement":"The code used to simulate data can be found at https://github.\r\ncom/medical-genomics-group/familyMC. Simulations are based\r\non genotype data from 1000 Genomes Project downloaded from\r\nhttps://ftp.1000genomes.ebi. ac.uk/vol1/ftp/release/20130502/.\r\nSupplemental material available at GENETICS online.","author":[{"last_name":"Krätschmer","first_name":"Ilse","orcid":"0000-0002-5636-9259","id":"30d4014e-7753-11eb-b44b-db6d61112e73","full_name":"Krätschmer, Ilse"},{"orcid":"0000-0001-8982-8813","last_name":"Robinson","first_name":"Matthew Richard","full_name":"Robinson, Matthew Richard","id":"E5D42276-F5DA-11E9-8E24-6303E6697425"}],"language":[{"iso":"eng"}],"ddc":["570"],"doi":"10.1093/genetics/iyag042","file":[{"file_size":734475,"relation":"main_file","content_type":"application/pdf","date_updated":"2026-07-27T11:54:00Z","creator":"dernst","checksum":"926322c83b02522e96ab7a86e4011eec","access_level":"open_access","file_name":"2026_Genetics_Kraetschmer.pdf","date_created":"2026-07-27T11:54:00Z","file_id":"22425","success":1}],"publication_status":"published","oa":1,"intvolume":"       232","year":"2026","date_created":"2026-03-23T15:02:54Z","article_type":"original","related_material":{"link":[{"url":"https://github.com/medical-genomics-group/familyMC","relation":"software"}]},"OA_type":"hybrid","supplementarymaterial":"no","publication_identifier":{"issn":["1943-2631"]},"type":"journal_article","status":"public","oa_version":"Published Version","citation":{"apa":"Krätschmer, I., &#38; Robinson, M. R. (2026). A quantitative genetic model for indirect genetic effects and genomic imprinting under random and assortative mating. <i>Genetics</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/genetics/iyag042\">https://doi.org/10.1093/genetics/iyag042</a>","chicago":"Krätschmer, Ilse, and Matthew Richard Robinson. “A Quantitative Genetic Model for Indirect Genetic Effects and Genomic Imprinting under Random and Assortative Mating.” <i>Genetics</i>. Oxford University Press, 2026. <a href=\"https://doi.org/10.1093/genetics/iyag042\">https://doi.org/10.1093/genetics/iyag042</a>.","mla":"Krätschmer, Ilse, and Matthew Richard Robinson. “A Quantitative Genetic Model for Indirect Genetic Effects and Genomic Imprinting under Random and Assortative Mating.” <i>Genetics</i>, vol. 232, no. 4, iyag042, Oxford University Press, 2026, doi:<a href=\"https://doi.org/10.1093/genetics/iyag042\">10.1093/genetics/iyag042</a>.","ista":"Krätschmer I, Robinson MR. 2026. A quantitative genetic model for indirect genetic effects and genomic imprinting under random and assortative mating. Genetics. 232(4), iyag042.","short":"I. Krätschmer, M.R. Robinson, Genetics 232 (2026).","ieee":"I. Krätschmer and M. R. Robinson, “A quantitative genetic model for indirect genetic effects and genomic imprinting under random and assortative mating,” <i>Genetics</i>, vol. 232, no. 4. Oxford University Press, 2026.","ama":"Krätschmer I, Robinson MR. A quantitative genetic model for indirect genetic effects and genomic imprinting under random and assortative mating. <i>Genetics</i>. 2026;232(4). doi:<a href=\"https://doi.org/10.1093/genetics/iyag042\">10.1093/genetics/iyag042</a>"},"article_number":"iyag042","abstract":[{"text":"An individual's phenotype reflects a complex interplay of the direct effects of their DNA, epigenetic modifications of their DNA induced by their parents, and indirect effects of their parents' DNA. Here, we derive how the genetic variance within a population is changed under the influence of indirect maternal, paternal and parent-of-origin effects under random mating. We also consider indirect effects of a sibling, in particular how the genetic variance is altered when looking at the phenotypic difference between two siblings. The calculations are then extended to include assortative mating (AM), which alters the variance by inducing increased homozygosity and correlations within and across loci. AM likely leads to covariance of parental genetic effects, a measure of the similarity of parents in the indirect effects they have on their children. We propose that this assortment for parental characteristics, where biological parents create similar environments for their children, can create shared parental effects across traits and the appearance of cross-trait AM. Our theory shows how the resemblance among relatives increases under both AM, indirect and parent-of-origin effects. When our model is used to predict correlations among relatives in human height, we find that explaining the patterns observed in real data requires both indirect genetic effects and assortative mating. The degree to which direct, indirect and epigenetic effects shape the phenotypic variance of complex traits remains an open question that requires large-scale family data to be resolved.","lang":"eng"}],"scopus_import":"1","publisher":"Oxford University Press","das_tickbox":"1","external_id":{"pmid":["41677404"]},"quality_controlled":"1","date_updated":"2026-07-27T11:56:04Z","month":"04","volume":232,"title":"A quantitative genetic model for indirect genetic effects and genomic imprinting under random and assortative mating","PlanS_conform":"1","acknowledgement":"We thank members of the Medical Genomics group at ISTA for their comments, which improved this manuscript. This work was funded by an SNSF Eccellenza Grant to MRR (PCEGP3-181181), and by core funding from the Institute of Science and Technology Austria.","article_processing_charge":"Yes (via OA deal)","date_published":"2026-04-01T00:00:00Z"},{"status":"public","type":"journal_article","publication_identifier":{"eissn":["2589-0042"]},"supplementarymaterial":"no","OA_type":"gold","das_tickbox":"1","publisher":"Elsevier","abstract":[{"text":"The mammalian brain stores glucose, the main circulating energy substrate, as glycogen. In rodents, the cerebellum contains relatively high glycogen levels, yet its cellular and subcellular distribution remains poorly defined. Using monoclonal antibodies against glycogen, we examined its distribution in the mouse cerebellar cortex. Glycogen was predominantly localized to Bergmann glia (BG) processes in the molecular layer and was also detected in Purkinje cells (PCs), the principal cerebellar neurons. To assess the functional significance of cerebellar glycogen, we analyzed behavior in mice lacking glycogen synthase 1 (Gys1) in BG or PCs using a floxed Gys1 line. Gys1 deficiency in either PCs or GFAP-positive cells reduced anxiety-like behavior, whereas combined deletion caused PC degeneration and ataxia. These findings reveal a critical role for glycogen metabolism in both astrocytes and neurons in cerebellar function.","lang":"eng"}],"article_number":"115192","citation":{"ama":"Akther S, Lee AB, Konno A, et al. Distribution and functional significance of rodent cerebellar glycogen. <i>iScience</i>. 2026;29(4). doi:<a href=\"https://doi.org/10.1016/j.isci.2026.115192\">10.1016/j.isci.2026.115192</a>","ieee":"S. Akther <i>et al.</i>, “Distribution and functional significance of rodent cerebellar glycogen,” <i>iScience</i>, vol. 29, no. 4. Elsevier, 2026.","mla":"Akther, Sonam, et al. “Distribution and Functional Significance of Rodent Cerebellar Glycogen.” <i>IScience</i>, vol. 29, no. 4, 115192, Elsevier, 2026, doi:<a href=\"https://doi.org/10.1016/j.isci.2026.115192\">10.1016/j.isci.2026.115192</a>.","ista":"Akther S, Lee AB, Konno A, Asiminas A, Vittani M, Mishima T, Hirai H, Meehan CF, Duran J, Guinovart J, Ashida H, Morita T, Baba O, Shigemoto R, Nedergaard M, Hirase H. 2026. Distribution and functional significance of rodent cerebellar glycogen. iScience. 29(4), 115192.","short":"S. Akther, A.B. Lee, A. Konno, A. Asiminas, M. Vittani, T. Mishima, H. Hirai, C.F. Meehan, J. Duran, J. Guinovart, H. Ashida, T. Morita, O. Baba, R. Shigemoto, M. Nedergaard, H. Hirase, IScience 29 (2026).","apa":"Akther, S., Lee, A. B., Konno, A., Asiminas, A., Vittani, M., Mishima, T., … Hirase, H. (2026). Distribution and functional significance of rodent cerebellar glycogen. <i>IScience</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.isci.2026.115192\">https://doi.org/10.1016/j.isci.2026.115192</a>","chicago":"Akther, Sonam, Ashley Bomin Lee, Ayumu Konno, Antonis Asiminas, Marta Vittani, Tsuneko Mishima, Hirokazu Hirai, et al. “Distribution and Functional Significance of Rodent Cerebellar Glycogen.” <i>IScience</i>. Elsevier, 2026. <a href=\"https://doi.org/10.1016/j.isci.2026.115192\">https://doi.org/10.1016/j.isci.2026.115192</a>."},"scopus_import":"1","oa_version":"Published Version","month":"04","date_updated":"2026-07-27T12:05:30Z","quality_controlled":"1","external_id":{"pmid":["41890976"]},"article_processing_charge":"Yes","date_published":"2026-04-17T00:00:00Z","acknowledgement":"This work was supported by the Novo Nordisk Foundation (NNFOC0058058, H. Hirase), the Danmarks Frie Forskningsfond (0134-00107B and 5283-00069A, H.Hirase), the Lundbeck Foundation, Japan Society for the Promotion of Science Grants-in-Aid for Scientific Research (KAKENHI) program (22K06454/24H01221, A.K.; 23K27482, H.Hirai), the Japan Agency for Medical Research and Development (AMED) Brain Mapping by Integrated Neurotechnologies for Disease Studies (Brain/MINDS) (JP21dm0207111, H. Hirai), AMED Brain/MINDS 2.0 (JP23wm0625001 and JP24wm0625103, H. Hirai), and grants from the Spanish Ministerio de Ciencia e Innovación (MCIU/FEDER/AEI) (PID2020-118699 GB-100, J.D.) and the Fundación Ramón Areces (J.D.). Sonam Akther has been supported by the RIKEN IPA fellowship. We are thankful to Dr. Yuki Oe for his support in the initial stage of this study and to Dan Xue for his help with the graphical abstract. We thank Dr. Pia Weikop for providing CTN research infrastructure. The authors declare no competing financial interests.","title":"Distribution and functional significance of rodent cerebellar glycogen","PlanS_conform":"1","volume":29,"publication":"iScience","OA_place":"publisher","day":"17","researchdata_availability":"upon request","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"has_accepted_license":"1","pmid":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"21502","department":[{"_id":"RySh"}],"issue":"4","intvolume":"        29","publication_status":"published","oa":1,"file":[{"file_id":"22427","success":1,"date_created":"2026-07-27T12:03:23Z","access_level":"open_access","file_name":"2026_iScience_Akther.pdf","checksum":"9c9ccc87072d04808e4af407d647ed20","creator":"dernst","relation":"main_file","content_type":"application/pdf","date_updated":"2026-07-27T12:03:23Z","file_size":14469960}],"doi":"10.1016/j.isci.2026.115192","ddc":["570"],"language":[{"iso":"eng"}],"author":[{"last_name":"Akther","first_name":"Sonam","full_name":"Akther, Sonam"},{"last_name":"Lee","first_name":"Ashley Bomin","full_name":"Lee, Ashley Bomin"},{"last_name":"Konno","first_name":"Ayumu","full_name":"Konno, Ayumu"},{"full_name":"Asiminas, Antonis","first_name":"Antonis","last_name":"Asiminas"},{"first_name":"Marta","last_name":"Vittani","full_name":"Vittani, Marta"},{"first_name":"Tsuneko","last_name":"Mishima","full_name":"Mishima, Tsuneko"},{"full_name":"Hirai, Hirokazu","last_name":"Hirai","first_name":"Hirokazu"},{"last_name":"Meehan","first_name":"Claire Francesca","full_name":"Meehan, Claire Francesca"},{"full_name":"Duran, Jordi","last_name":"Duran","first_name":"Jordi"},{"last_name":"Guinovart","first_name":"Joan","full_name":"Guinovart, Joan"},{"last_name":"Ashida","first_name":"Hitoshi","full_name":"Ashida, Hitoshi"},{"first_name":"Tsuyoshi","last_name":"Morita","full_name":"Morita, Tsuyoshi"},{"full_name":"Baba, Otto","last_name":"Baba","first_name":"Otto"},{"last_name":"Shigemoto","first_name":"Ryuichi","orcid":"0000-0001-8761-9444","id":"499F3ABC-F248-11E8-B48F-1D18A9856A87","full_name":"Shigemoto, Ryuichi"},{"full_name":"Nedergaard, Maiken","last_name":"Nedergaard","first_name":"Maiken"},{"last_name":"Hirase","first_name":"Hajime","full_name":"Hirase, Hajime"}],"file_date_updated":"2026-07-27T12:03:23Z","dataavailabilitystatement":"This study did not generate new materials or reagents.All data supporting the findings of this study are available from the lead contact upon reasonable request.\r\nThis study did not generate any new code.\r\nAdditional raw data can be obtained from the lead contact upon reasonable request.","article_type":"original","date_created":"2026-03-29T22:07:07Z","DOAJ_listed":"1","year":"2026"},{"date_created":"2026-03-23T15:05:42Z","article_type":"original","year":"2026","DOAJ_listed":"1","project":[{"name":"Sex chromosomes in evolution and development","grant_number":"PAT 8748323","_id":"8ed82125-16d5-11f0-9cad-fbcae312235b"}],"doi":"10.1093/evlett/qrag003","file":[{"relation":"main_file","date_updated":"2026-07-27T11:59:40Z","content_type":"application/pdf","file_size":1895786,"file_name":"2026_EvolutionLetters_Layana.pdf","access_level":"open_access","checksum":"7c929e78c369a5e6e064bcf263e955ad","creator":"dernst","success":1,"file_id":"22426","date_created":"2026-07-27T11:59:40Z"}],"oa":1,"publication_status":"published","intvolume":"        10","dataavailabilitystatement":"Scripts, Supplementary Datasets 1–7, and Tables S1, S2, S5 and S6 are also available at https://doi.org/10.15479/AT-ISTA-21116. Pipelines are available at https://git.ista.ac.at/llayanaf/transitions_diptera.","file_date_updated":"2026-07-27T11:59:40Z","author":[{"orcid":"0000-0002-1253-6297","last_name":"Layana Franco","first_name":"Lorena Alexandra","full_name":"Layana Franco, Lorena Alexandra","id":"02814589-eb8f-11eb-b029-a70074f3f18f"},{"first_name":"Melissa A","last_name":"Toups","orcid":"0000-0002-9752-7380","id":"4E099E4E-F248-11E8-B48F-1D18A9856A87","full_name":"Toups, Melissa A"},{"id":"49E1C5C6-F248-11E8-B48F-1D18A9856A87","full_name":"Vicoso, Beatriz","last_name":"Vicoso","first_name":"Beatriz","orcid":"0000-0002-4579-8306"}],"language":[{"iso":"eng"}],"ddc":["570"],"has_accepted_license":"1","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"issue":"3","department":[{"_id":"BeVi"},{"_id":"GradSch"}],"_id":"21486","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","corr_author":"1","OA_place":"publisher","publication":"Evolution Letters","researchdata_availability":"yes","day":"01","title":"Causes and consequences of sex-chromosome turnovers in Diptera","acknowledgement":"This work was supported by a grant from the Austrian Science Fund (FWF, grant number PAT 8748323) to B.V. We thank the Vicoso group for their feedback on an early version of the manuscript. We are grateful to Kamil Jaron and Julia Gries for helpful discussions and for sharing their unpublished work. Computational resources and support were provided by the Scientific Computing Unit at ISTA.","date_published":"2026-06-01T00:00:00Z","article_processing_charge":"Yes","acknowledged_ssus":[{"_id":"ScienComp"}],"volume":10,"month":"06","date_updated":"2026-07-27T12:00:11Z","quality_controlled":"1","publisher":"Oxford University Press","oa_version":"Published Version","abstract":[{"lang":"eng","text":"Sex-chromosome systems are highly variable across animals, but how they transition from one to another is not well understood. Diptera have undergone multiple sex-chromosome turnovers and expansions while maintaining their general chromosomal content, which makes them an ideal clade to study such transitions. We analyzed more than 100 dipteran whole-genome assemblies and identified 4 new lineages that underwent sex-chromosome turnover (in addition to the 5 previously reported). We find that the majority of turnovers happened in the group Schizophora, which tend to have fewer genes on Muller element F (the chromosome homologous to the ancestral insect X chromosome) than lower dipterans, a factor previously hypothesized to facilitate turnover. Most derived X chromosomes have higher GC content than autosomes, consistent with a high prevalence of male achiasmy in Diptera. In addition, an excess of gene movement out of the X is detected for most of these new X chromosomes, and many of these moved genes have high testis expression in Drosophila, suggesting that out-of-X gene movement contributes to the long-term demasculinization of X chromosomes."}],"article_number":"qrag003","citation":{"ieee":"L. A. Layana Franco, M. A. Toups, and B. Vicoso, “Causes and consequences of sex-chromosome turnovers in Diptera,” <i>Evolution Letters</i>, vol. 10, no. 3. Oxford University Press, 2026.","ama":"Layana Franco LA, Toups MA, Vicoso B. Causes and consequences of sex-chromosome turnovers in Diptera. <i>Evolution Letters</i>. 2026;10(3). doi:<a href=\"https://doi.org/10.1093/evlett/qrag003\">10.1093/evlett/qrag003</a>","apa":"Layana Franco, L. A., Toups, M. A., &#38; Vicoso, B. (2026). Causes and consequences of sex-chromosome turnovers in Diptera. <i>Evolution Letters</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/evlett/qrag003\">https://doi.org/10.1093/evlett/qrag003</a>","chicago":"Layana Franco, Lorena Alexandra, Melissa A Toups, and Beatriz Vicoso. “Causes and Consequences of Sex-Chromosome Turnovers in Diptera.” <i>Evolution Letters</i>. Oxford University Press, 2026. <a href=\"https://doi.org/10.1093/evlett/qrag003\">https://doi.org/10.1093/evlett/qrag003</a>.","mla":"Layana Franco, Lorena Alexandra, et al. “Causes and Consequences of Sex-Chromosome Turnovers in Diptera.” <i>Evolution Letters</i>, vol. 10, no. 3, qrag003, Oxford University Press, 2026, doi:<a href=\"https://doi.org/10.1093/evlett/qrag003\">10.1093/evlett/qrag003</a>.","short":"L.A. Layana Franco, M.A. Toups, B. Vicoso, Evolution Letters 10 (2026).","ista":"Layana Franco LA, Toups MA, Vicoso B. 2026. Causes and consequences of sex-chromosome turnovers in Diptera. Evolution Letters. 10(3), qrag003."},"publication_identifier":{"eissn":["2056-3744"]},"type":"journal_article","status":"public","OA_type":"gold","supplementarymaterial":"yes"},{"supplementarymaterial":"yes","OA_type":"gold","publication_identifier":{"eissn":["2397-4648"]},"type":"journal_article","status":"public","oa_version":"Published Version","article_number":"47","scopus_import":"1","citation":{"chicago":"Kruppe, Jonathon, Josue Rodriguez, Catherine Xu, James Analytis, Joseph Orenstein, and Veronika Sunko. “Anisotropic Multi-Q Order in CoxTaS2.” <i>Npj Quantum Materials</i>. Springer Nature, 2026. <a href=\"https://doi.org/10.1038/s41535-026-00856-w\">https://doi.org/10.1038/s41535-026-00856-w</a>.","apa":"Kruppe, J., Rodriguez, J., Xu, C., Analytis, J., Orenstein, J., &#38; Sunko, V. (2026). Anisotropic multi-Q order in CoxTaS2. <i>Npj Quantum Materials</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41535-026-00856-w\">https://doi.org/10.1038/s41535-026-00856-w</a>","short":"J. Kruppe, J. Rodriguez, C. Xu, J. Analytis, J. Orenstein, V. Sunko, Npj Quantum Materials 11 (2026).","ista":"Kruppe J, Rodriguez J, Xu C, Analytis J, Orenstein J, Sunko V. 2026. Anisotropic multi-Q order in CoxTaS2. npj Quantum Materials. 11, 47.","mla":"Kruppe, Jonathon, et al. “Anisotropic Multi-Q Order in CoxTaS2.” <i>Npj Quantum Materials</i>, vol. 11, 47, Springer Nature, 2026, doi:<a href=\"https://doi.org/10.1038/s41535-026-00856-w\">10.1038/s41535-026-00856-w</a>.","ieee":"J. Kruppe, J. Rodriguez, C. Xu, J. Analytis, J. Orenstein, and V. Sunko, “Anisotropic multi-Q order in CoxTaS2,” <i>npj Quantum Materials</i>, vol. 11. Springer Nature, 2026.","ama":"Kruppe J, Rodriguez J, Xu C, Analytis J, Orenstein J, Sunko V. Anisotropic multi-Q order in CoxTaS2. <i>npj Quantum Materials</i>. 2026;11. doi:<a href=\"https://doi.org/10.1038/s41535-026-00856-w\">10.1038/s41535-026-00856-w</a>"},"abstract":[{"text":"The cobalt-intercalated transition metal dichalcogenide CoxTaS2 hosts a rich landscape of magnetic phases that depend sensitively on x. While the stoichiometric compound with x = 1/3 exhibits a single magnetic transition, samples with x≤0.325 display two transitions with an anomalous Hall effect (AHE) emerging in the lower temperature phase. Here, we resolve the spin structure in each phase by employing a suite of magneto-optical probes that include the discovery of anomalous magneto-birefringence: a spontaneous time-reversal sensitive rotation of the principal optic axes. A symmetry-based analysis identifies the AHE-active phase as an anisotropic (2+1)Q state, in which magnetic modulation at one wavevector (Q) differs in symmetry from that at the remaining two. The (2+1)Q state naturally exhibits scalar spin chirality as a mechanism for the AHE and expands the classification of multi-Q magnetic phases.","lang":"eng"}],"publisher":"Springer Nature","das_tickbox":"1","external_id":{"arxiv":["2507.12588"]},"date_updated":"2026-07-27T11:26:11Z","quality_controlled":"1","month":"06","volume":11,"title":"Anisotropic multi-Q order in CoxTaS2","PlanS_conform":"1","acknowledgement":"We thank Linda Ye and Yue Sun for helpful discussion. Experimental and theoretical work at LBNL and UC Berkeley was funded by the Quantum Materials (KC2202) program under the U.S. Department of Energy, Office of Science, Office of Basic Energy Sciences, Materials Sciences and Engineering Division under Contract No. DE-AC02-05CH11231. V.S. and J.O. received support from the Gordon and Betty Moore Foundation’s EPiQS Initiative through Grant GBMF4537 to J.O. at UC Berkeley. J.K. received support from the National Science Foundation Graduate Research Fellowship Program under Grant No. 2146752. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation. During the preparation of this manuscript, we became aware of the following related work: refs. 56,57,58.","arxiv":1,"article_processing_charge":"Yes","date_published":"2026-06-08T00:00:00Z","researchdata_availability":"upon request","day":"08","OA_place":"publisher","corr_author":"1","publication":"npj Quantum Materials","department":[{"_id":"VeSu"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"21436","has_accepted_license":"1","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"file_date_updated":"2026-07-27T11:24:16Z","dataavailabilitystatement":"The data underpinning the manuscript are available upon reasonable request.","author":[{"last_name":"Kruppe","first_name":"Jonathon","full_name":"Kruppe, Jonathon"},{"full_name":"Rodriguez, Josue","last_name":"Rodriguez","first_name":"Josue"},{"full_name":"Xu, Catherine","last_name":"Xu","first_name":"Catherine"},{"last_name":"Analytis","first_name":"James","full_name":"Analytis, James"},{"last_name":"Orenstein","first_name":"Joseph","full_name":"Orenstein, Joseph"},{"last_name":"Sunko","first_name":"Veronika","orcid":"0000-0003-2724-3523","id":"23cb1cf6-2c7a-11ef-91a4-f72fc19f20b3","full_name":"Sunko, Veronika"}],"language":[{"iso":"eng"}],"ddc":["530"],"doi":"10.1038/s41535-026-00856-w","file":[{"relation":"main_file","content_type":"application/pdf","date_updated":"2026-07-27T11:24:16Z","file_size":2072860,"file_id":"22421","success":1,"date_created":"2026-07-27T11:24:16Z","access_level":"open_access","file_name":"2026_npjQuantumMaterials_Kruppe.pdf","checksum":"4d5f7e36be6190de93aa1a1bc852d188","creator":"dernst"}],"publication_status":"published","oa":1,"intvolume":"        11","year":"2026","DOAJ_listed":"1","date_created":"2026-03-11T10:39:55Z","article_type":"original"},{"publisher":"Wiley","das_tickbox":"0","scopus_import":"1","abstract":[{"lang":"eng","text":"We study the ground state energy of a gas of spin 1/2 fermions with repulsive short-range interactions. We derive an upper bound that agrees, at low density e, with the Huang–Yang conjecture. The latter captures the first three terms in an asymptotic low-density expansion, and in particular the Huang–Yang correction term of order e^7/3. Our trial state is constructed using an adaptation of the bosonic Bogoliubov theory to the Fermi system, where the correlation structure of fermionic particles is incorporated by quasi-bosonic Bogoliubov transformations. In the latter, it is important to consider a modified zero-energy scattering equation that takes into account the presence of the Fermi sea, in the spirit of the Bethe–Goldstone equation."}],"citation":{"ama":"Giacomelli EL, Hainzl C, Nam PT, Seiringer R. The Huang–Yang formula for the low-density Fermi gas: Upper bound. <i>Communications on Pure and Applied Mathematics</i>. 2026;79(8):1919-1972. doi:<a href=\"https://doi.org/10.1002/cpa.70040\">10.1002/cpa.70040</a>","ieee":"E. L. Giacomelli, C. Hainzl, P. T. Nam, and R. Seiringer, “The Huang–Yang formula for the low-density Fermi gas: Upper bound,” <i>Communications on Pure and Applied Mathematics</i>, vol. 79, no. 8. Wiley, pp. 1919–1972, 2026.","mla":"Giacomelli, Emanuela L., et al. “The Huang–Yang Formula for the Low-Density Fermi Gas: Upper Bound.” <i>Communications on Pure and Applied Mathematics</i>, vol. 79, no. 8, Wiley, 2026, pp. 1919–72, doi:<a href=\"https://doi.org/10.1002/cpa.70040\">10.1002/cpa.70040</a>.","ista":"Giacomelli EL, Hainzl C, Nam PT, Seiringer R. 2026. The Huang–Yang formula for the low-density Fermi gas: Upper bound. Communications on Pure and Applied Mathematics. 79(8), 1919–1972.","short":"E.L. Giacomelli, C. Hainzl, P.T. Nam, R. Seiringer, Communications on Pure and Applied Mathematics 79 (2026) 1919–1972.","apa":"Giacomelli, E. L., Hainzl, C., Nam, P. T., &#38; Seiringer, R. (2026). The Huang–Yang formula for the low-density Fermi gas: Upper bound. <i>Communications on Pure and Applied Mathematics</i>. Wiley. <a href=\"https://doi.org/10.1002/cpa.70040\">https://doi.org/10.1002/cpa.70040</a>","chicago":"Giacomelli, Emanuela L., Christian Hainzl, Phan Thành Nam, and Robert Seiringer. “The Huang–Yang Formula for the Low-Density Fermi Gas: Upper Bound.” <i>Communications on Pure and Applied Mathematics</i>. Wiley, 2026. <a href=\"https://doi.org/10.1002/cpa.70040\">https://doi.org/10.1002/cpa.70040</a>."},"oa_version":"Published Version","type":"journal_article","publication_identifier":{"issn":["0010-3640"],"eissn":["1097-0312"]},"status":"public","supplementarymaterial":"no","OA_type":"hybrid","title":"The Huang–Yang formula for the low-density Fermi gas: Upper bound","date_published":"2026-08-01T00:00:00Z","article_processing_charge":"Yes (via OA deal)","arxiv":1,"acknowledgement":"We thank the referees for valuable remarks. This work was partially funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) via the TRR 352 – Project-ID 470903074. PTN was partially supported by the European Research Council via the ERC Consolidator Grant RAMBAS – Project-Nr. 10104424.\r\nOpen access publishing facilitated by Università degli Studi di Milano, as part of the Wiley - CRUI-CARE agreement.","volume":79,"month":"08","external_id":{"arxiv":["2409.17914"]},"quality_controlled":"1","date_updated":"2026-07-27T11:40:33Z","page":"1919-1972","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"has_accepted_license":"1","_id":"21472","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","department":[{"_id":"RoSe"}],"issue":"8","OA_place":"publisher","publication":"Communications on Pure and Applied Mathematics","day":"01","researchdata_availability":"no","date_created":"2026-03-22T23:04:33Z","article_type":"original","year":"2026","publication_status":"published","oa":1,"doi":"10.1002/cpa.70040","file":[{"creator":"dernst","checksum":"4ef624157c2f6cb837be229dd6b912cc","file_name":"2026_CommPureApplMath_Giacomelli.pdf","access_level":"open_access","date_created":"2026-07-27T11:38:57Z","success":1,"file_id":"22423","file_size":2224756,"content_type":"application/pdf","relation":"main_file","date_updated":"2026-07-27T11:38:57Z"}],"intvolume":"        79","file_date_updated":"2026-07-27T11:38:57Z","language":[{"iso":"eng"}],"ddc":["510"],"author":[{"last_name":"Giacomelli","first_name":"Emanuela L.","full_name":"Giacomelli, Emanuela L."},{"full_name":"Hainzl, Christian","last_name":"Hainzl","first_name":"Christian"},{"first_name":"Phan Thành","last_name":"Nam","full_name":"Nam, Phan Thành"},{"last_name":"Seiringer","first_name":"Robert","orcid":"0000-0002-6781-0521","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87","full_name":"Seiringer, Robert"}]},{"title":"From kinetic theory to AI: A rediscovery of high-dimensional divergences and their properties","article_processing_charge":"No","arxiv":1,"date_published":"2026-06-01T00:00:00Z","acknowledgement":"This work has been written within the activities of GNCS and GNFM groups of INdAM (Italian\r\nNational Institute of High Mathematics). G.B. has been funded by the European Union’s Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie grant agreement No 101034413. P.G. has been funded by the European Union - NextGenerationEU, in the framework of the GRINSGrowing Resilient, INclusive and Sustainable (GRINS PE00000018).","volume":36,"month":"06","external_id":{"arxiv":["2507.11387"]},"date_updated":"2026-07-27T12:11:38Z","quality_controlled":"1","publisher":"World Scientific Publishing","das_tickbox":"0","main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2507.11387","open_access":"1"}],"citation":{"ista":"Auricchio G, Brigati G, Giudici P, Toscani G. 2026. From kinetic theory to AI: A rediscovery of high-dimensional divergences and their properties. Mathematical Models and Methods in Applied Sciences. 36(6), 1185–1233.","short":"G. Auricchio, G. Brigati, P. Giudici, G. Toscani, Mathematical Models and Methods in Applied Sciences 36 (2026) 1185–1233.","mla":"Auricchio, Gennaro, et al. “From Kinetic Theory to AI: A Rediscovery of High-Dimensional Divergences and Their Properties.” <i>Mathematical Models and Methods in Applied Sciences</i>, vol. 36, no. 6, World Scientific Publishing, 2026, pp. 1185–233, doi:<a href=\"https://doi.org/10.1142/S0218202526410010\">10.1142/S0218202526410010</a>.","chicago":"Auricchio, Gennaro, Giovanni Brigati, Paolo Giudici, and Giuseppe Toscani. “From Kinetic Theory to AI: A Rediscovery of High-Dimensional Divergences and Their Properties.” <i>Mathematical Models and Methods in Applied Sciences</i>. World Scientific Publishing, 2026. <a href=\"https://doi.org/10.1142/S0218202526410010\">https://doi.org/10.1142/S0218202526410010</a>.","apa":"Auricchio, G., Brigati, G., Giudici, P., &#38; Toscani, G. (2026). From kinetic theory to AI: A rediscovery of high-dimensional divergences and their properties. <i>Mathematical Models and Methods in Applied Sciences</i>. World Scientific Publishing. <a href=\"https://doi.org/10.1142/S0218202526410010\">https://doi.org/10.1142/S0218202526410010</a>","ama":"Auricchio G, Brigati G, Giudici P, Toscani G. From kinetic theory to AI: A rediscovery of high-dimensional divergences and their properties. <i>Mathematical Models and Methods in Applied Sciences</i>. 2026;36(6):1185-1233. doi:<a href=\"https://doi.org/10.1142/S0218202526410010\">10.1142/S0218202526410010</a>","ieee":"G. Auricchio, G. Brigati, P. Giudici, and G. Toscani, “From kinetic theory to AI: A rediscovery of high-dimensional divergences and their properties,” <i>Mathematical Models and Methods in Applied Sciences</i>, vol. 36, no. 6. World Scientific Publishing, pp. 1185–1233, 2026."},"scopus_import":"1","abstract":[{"text":"Selecting an appropriate divergence measure is a critical aspect of machine learning, as it directly impacts model performance. Among the most widely used, we find the Kullback–Leibler (KL) divergence, originally introduced in kinetic theory as a measure of relative entropy between probability distributions. Just as in machine learning, the ability to quantify the proximity of probability distributions plays a central role in kinetic theory. In this paper, we present a comparative review of divergence measures rooted in kinetic theory, highlighting their theoretical foundations and exploring their potential applications in machine learning and artificial intelligence.","lang":"eng"}],"oa_version":"Preprint","type":"journal_article","publication_identifier":{"issn":["0218-2025"],"eissn":["1793-6314"]},"status":"public","OA_type":"green","supplementarymaterial":"no","date_created":"2026-03-29T22:07:08Z","article_type":"original","year":"2026","oa":1,"publication_status":"published","doi":"10.1142/S0218202526410010","project":[{"call_identifier":"H2020","name":"IST-BRIDGE: International postdoctoral program","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c","grant_number":"101034413"}],"intvolume":"        36","mathsc":["35B40","35L60","35K55","35Q70","35Q91","35Q92"],"language":[{"iso":"eng"}],"author":[{"full_name":"Auricchio, Gennaro","last_name":"Auricchio","first_name":"Gennaro"},{"id":"63ff57e8-1fbb-11ee-88f2-f558ffc59cf1","full_name":"Brigati, Giovanni","last_name":"Brigati","first_name":"Giovanni"},{"last_name":"Giudici","first_name":"Paolo","full_name":"Giudici, Paolo"},{"full_name":"Toscani, Giuseppe","last_name":"Toscani","first_name":"Giuseppe"}],"page":"1185-1233","_id":"21504","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","ec_funded":1,"issue":"6","department":[{"_id":"JaMa"}],"OA_place":"repository","publication":"Mathematical Models and Methods in Applied Sciences","day":"01","researchdata_availability":"no"},{"intvolume":"        22","publication_status":"published","oa":1,"file":[{"file_size":2960392,"content_type":"application/pdf","date_updated":"2026-07-27T12:28:27Z","relation":"main_file","creator":"dernst","checksum":"bb28ed456cdd288d97854b084dd4b2e1","file_name":"2026_NaturePhysics_Grober.pdf","access_level":"open_access","date_created":"2026-07-27T12:28:27Z","success":1,"file_id":"22429"}],"project":[{"grant_number":"101086998","_id":"bdac72da-d553-11ed-ba76-eae56e802b74","name":"VULCAN: matter, powered from within"}],"doi":"10.1038/s41567-026-03189-4","language":[{"iso":"eng"}],"ddc":["570","530"],"author":[{"last_name":"Grober","first_name":"Daniel B","id":"c692f879-718d-11ee-81f0-da7caa79c783","full_name":"Grober, Daniel B"},{"last_name":"Dhar","first_name":"Tanumoy","full_name":"Dhar, Tanumoy"},{"full_name":"Saintillan, David","last_name":"Saintillan","first_name":"David"},{"first_name":"Jérémie A","last_name":"Palacci","orcid":"0000-0002-7253-9465","id":"8fb92548-2b22-11eb-b7c1-a3f0d08d7c7d","full_name":"Palacci, Jérémie A"}],"dataavailabilitystatement":"The datasets generated and analysed during the current study are openly available via Zenodo at https://doi.org/10.5281/zenodo.15236674 (ref. 32). All data are released under the CC-BY 4.0 licence. For any further questions about data access or reuse, please contact the corresponding author.","file_date_updated":"2026-07-27T12:28:27Z","article_type":"original","date_created":"2026-04-12T22:01:51Z","year":"2026","publication":"Nature Physics","corr_author":"1","OA_place":"publisher","day":"01","researchdata_availability":"yes","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"has_accepted_license":"1","page":"620-627","pmid":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"21721","department":[{"_id":"JePa"}],"month":"04","quality_controlled":"1","date_updated":"2026-07-27T12:29:45Z","external_id":{"pmid":["42006933"]},"date_published":"2026-04-01T00:00:00Z","article_processing_charge":"Yes (via OA deal)","acknowledgement":"We thank E. Krasnopeeva for help with the bacterial culture, motility and genetic engineering. We thank Q. Martinet for help with the experimental design, F. Pertl for atomic force microscopy measurements and S. Hajek for the scanning electron microscopy imaging. This project has received funding from the European Research Council under the European Union’s Horizon Europe research and innovation programme (VULCAN, 101086998). The views and opinions expressed are, however, those of the authors only and do not necessarily reflect those of the European Union or the European Research Council Executive Agency. Neither the European Union nor the granting authority can be held responsible for them. J.P. thanks the Nanofabrication and Electron Microscopy Shared Scientific Units of ISTA for support. Open access funding provided by Institute of Science and Technology (IST Austria).","title":"The hydrodynamic torque dipole from rotary bacterial flagella powers symmetric discs","PlanS_conform":"1","volume":22,"acknowledged_ssus":[{"_id":"NanoFab"},{"_id":"EM-Fac"}],"status":"public","type":"journal_article","publication_identifier":{"issn":["1745-2473"],"eissn":["1745-2481"]},"OA_type":"hybrid","supplementarymaterial":"yes","das_tickbox":"1","publisher":"Springer Nature","scopus_import":"1","citation":{"ama":"Grober DB, Dhar T, Saintillan D, Palacci JA. The hydrodynamic torque dipole from rotary bacterial flagella powers symmetric discs. <i>Nature Physics</i>. 2026;22:620-627. doi:<a href=\"https://doi.org/10.1038/s41567-026-03189-4\">10.1038/s41567-026-03189-4</a>","ieee":"D. B. Grober, T. Dhar, D. Saintillan, and J. A. Palacci, “The hydrodynamic torque dipole from rotary bacterial flagella powers symmetric discs,” <i>Nature Physics</i>, vol. 22. Springer Nature, pp. 620–627, 2026.","short":"D.B. Grober, T. Dhar, D. Saintillan, J.A. Palacci, Nature Physics 22 (2026) 620–627.","ista":"Grober DB, Dhar T, Saintillan D, Palacci JA. 2026. The hydrodynamic torque dipole from rotary bacterial flagella powers symmetric discs. Nature Physics. 22, 620–627.","mla":"Grober, Daniel B., et al. “The Hydrodynamic Torque Dipole from Rotary Bacterial Flagella Powers Symmetric Discs.” <i>Nature Physics</i>, vol. 22, Springer Nature, 2026, pp. 620–27, doi:<a href=\"https://doi.org/10.1038/s41567-026-03189-4\">10.1038/s41567-026-03189-4</a>.","chicago":"Grober, Daniel B, Tanumoy Dhar, David Saintillan, and Jérémie A Palacci. “The Hydrodynamic Torque Dipole from Rotary Bacterial Flagella Powers Symmetric Discs.” <i>Nature Physics</i>. Springer Nature, 2026. <a href=\"https://doi.org/10.1038/s41567-026-03189-4\">https://doi.org/10.1038/s41567-026-03189-4</a>.","apa":"Grober, D. B., Dhar, T., Saintillan, D., &#38; Palacci, J. A. (2026). The hydrodynamic torque dipole from rotary bacterial flagella powers symmetric discs. <i>Nature Physics</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41567-026-03189-4\">https://doi.org/10.1038/s41567-026-03189-4</a>"},"abstract":[{"lang":"eng","text":"Swimming bacteria move through a fluid by actuating their moving body parts. They are force-free and can be described as hydrodynamic force dipoles: pushers or pullers. This modelling description is broadly used in biological physics and active matter research, and it has successfully predicted, for example, the superfluid behaviour of suspensions of pushers or the bend instability and emergence of turbulent flows in active nematics. However, this description accounts only for the translational motion of the swimming body and neglects the effects of hydrodynamic torque dipoles, which are relevant to bacteria with rotary motor-driven flagella, such as swimming Escherichia coli. Here we show that the torque dipole of confined swimming E. coli can power the persistent rotation of symmetric discs. The torque dipole leads to a traction force on the discs, an additive mechanism that is both contactless and independent of the orientation of the bacteria. Our results indicate that the torque dipole of swimming E. coli is notable in confined geometries, which is relevant to bacterial transport through porous materials, biofilms and the development of chiral fluids."}],"oa_version":"Published Version"},{"day":"01","researchdata_availability":"no","OA_place":"publisher","corr_author":"1","publication":"Current Opinion in Plant Biology","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"21716","issue":"6","department":[{"_id":"XiFe"}],"pmid":1,"tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"has_accepted_license":"1","file_date_updated":"2026-07-27T12:20:55Z","dataavailabilitystatement":"No data was used for the research described in the article.","language":[{"iso":"eng"}],"ddc":["580"],"author":[{"orcid":"0000-0003-1671-9434","first_name":"Hiroki","last_name":"Nagai","full_name":"Nagai, Hiroki","id":"608df3e6-e2ab-11ed-8890-c9318cec7da4"},{"full_name":"Feng, Xiaoqi","id":"e0164712-22ee-11ed-b12a-d80fcdf35958","orcid":"0000-0002-4008-1234","first_name":"Xiaoqi","last_name":"Feng"}],"oa":1,"publication_status":"published","file":[{"relation":"main_file","content_type":"application/pdf","date_updated":"2026-07-27T12:20:55Z","file_size":2255022,"access_level":"open_access","file_name":"2026_CurrentOpinionPlantBiology_Nagai.pdf","creator":"dernst","checksum":"929e801eb8f2aef08cf9d9f97be2b2af","file_id":"22428","success":1,"date_created":"2026-07-27T12:20:55Z"}],"doi":"10.1016/j.pbi.2026.102881","intvolume":"        91","year":"2026","date_created":"2026-04-12T22:01:50Z","article_type":"original","supplementarymaterial":"no","OA_type":"hybrid","type":"journal_article","publication_identifier":{"issn":["1369-5266"],"eissn":["1879-0356"]},"status":"public","citation":{"ieee":"H. NAGAI and X. Feng, “Genetic and epigenetic mechanisms underlying male reproductive thermotolerance,” <i>Current Opinion in Plant Biology</i>, vol. 91, no. 6. Elsevier, 2026.","ama":"NAGAI H, Feng X. Genetic and epigenetic mechanisms underlying male reproductive thermotolerance. <i>Current Opinion in Plant Biology</i>. 2026;91(6). doi:<a href=\"https://doi.org/10.1016/j.pbi.2026.102881\">10.1016/j.pbi.2026.102881</a>","apa":"NAGAI, H., &#38; Feng, X. (2026). Genetic and epigenetic mechanisms underlying male reproductive thermotolerance. <i>Current Opinion in Plant Biology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.pbi.2026.102881\">https://doi.org/10.1016/j.pbi.2026.102881</a>","chicago":"NAGAI, HIROKI, and Xiaoqi Feng. “Genetic and Epigenetic Mechanisms Underlying Male Reproductive Thermotolerance.” <i>Current Opinion in Plant Biology</i>. Elsevier, 2026. <a href=\"https://doi.org/10.1016/j.pbi.2026.102881\">https://doi.org/10.1016/j.pbi.2026.102881</a>.","mla":"NAGAI, HIROKI, and Xiaoqi Feng. “Genetic and Epigenetic Mechanisms Underlying Male Reproductive Thermotolerance.” <i>Current Opinion in Plant Biology</i>, vol. 91, no. 6, 102881, Elsevier, 2026, doi:<a href=\"https://doi.org/10.1016/j.pbi.2026.102881\">10.1016/j.pbi.2026.102881</a>.","short":"H. NAGAI, X. Feng, Current Opinion in Plant Biology 91 (2026).","ista":"NAGAI H, Feng X. 2026. Genetic and epigenetic mechanisms underlying male reproductive thermotolerance. Current Opinion in Plant Biology. 91(6), 102881."},"scopus_import":"1","article_number":"102881","abstract":[{"lang":"eng","text":"Male germline development in plants is highly sensitive to heat stress, with elevated temperatures frequently impairing male fertility and consequently reducing seed production. Indeed, recent global warming has decreased major crop yields, emphasizing the urgent need to elucidate the molecular and cellular mechanisms underlying heat-induced male sterility. This review synthesizes current knowledge on how heat stress disrupts microsporogenesis and microgametogenesis, and how plants counteract these stresses through diverse thermotolerance mechanisms. We emphasize temperature-sensitive processes, including meiotic progression in male germ cells, programmed cell death of somatic tapetal nurse cells, and post-meiotic pollen tube development. We further discuss how epigenetic regulators enhance thermotolerance by reprogramming DNA methylation landscapes and modulating histone variant distribution. Finally, we propose future directions aimed at understanding the mechanisms of reproductive thermotolerance from the epigenetic perspective."}],"oa_version":"Published Version","publisher":"Elsevier","das_tickbox":"1","external_id":{"pmid":["41955759"]},"date_updated":"2026-07-27T12:26:03Z","quality_controlled":"1","month":"06","volume":91,"title":"Genetic and epigenetic mechanisms underlying male reproductive thermotolerance","PlanS_conform":"1","date_published":"2026-06-01T00:00:00Z","article_processing_charge":"Yes (via OA deal)","acknowledgement":"This work was supported by JSPS KAKENHI (grant number JP22J01430) and the Osamu Hayaishi Memorial Scholarship for Study Abroad for H.N."},{"intvolume":"        25","oa":1,"publication_status":"published","doi":"10.1038/s41563-026-02517-6","language":[{"iso":"eng"}],"author":[{"id":"71b4d059-2a03-11ee-914d-dfa3beed6530","full_name":"Baykusheva, Denitsa Rangelova","last_name":"Baykusheva","first_name":"Denitsa Rangelova","orcid":"0000-0002-7438-1139"},{"last_name":"Carmichael","first_name":"Deven","full_name":"Carmichael, Deven"},{"full_name":"Weber, Clara S.","last_name":"Weber","first_name":"Clara S."},{"full_name":"Lu, I. Te","last_name":"Lu","first_name":"I. Te"},{"full_name":"Glerean, Filippo","last_name":"Glerean","first_name":"Filippo"},{"full_name":"Meng, Tepie","first_name":"Tepie","last_name":"Meng"},{"first_name":"Pedro B.M.","last_name":"De Oliveira","full_name":"De Oliveira, Pedro B.M."},{"last_name":"Homes","first_name":"Christopher C.","full_name":"Homes, Christopher C."},{"last_name":"Zaliznyak","first_name":"Igor A.","full_name":"Zaliznyak, Igor A."},{"full_name":"Gu, G. D.","last_name":"Gu","first_name":"G. D."},{"last_name":"Dean","first_name":"Mark P.M.","full_name":"Dean, Mark P.M."},{"full_name":"Rubio, Angel","first_name":"Angel","last_name":"Rubio"},{"last_name":"Kennes","first_name":"Dante M.","full_name":"Kennes, Dante M."},{"last_name":"Claassen","first_name":"Martin","full_name":"Claassen, Martin"},{"last_name":"Mitrano","first_name":"Matteo","full_name":"Mitrano, Matteo"}],"dataavailabilitystatement":"The data that support the findings of this study are present in the Article and its Supplementary Information. Source data for Figs. 1–4 are available via Figshare at https://doi.org/10.6084/m9.figshare.31146367 (ref. 51). Any additional data are available from the corresponding authors upon request.","article_type":"original","date_created":"2026-04-12T22:01:53Z","year":"2026","publication":"Nature Materials","OA_place":"repository","corr_author":"1","day":"01","researchdata_availability":"upon request","page":"937-943","_id":"21726","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","department":[{"_id":"DeBa"}],"month":"06","date_updated":"2026-07-27T12:32:56Z","quality_controlled":"1","external_id":{"arxiv":["2601.20695 "]},"arxiv":1,"article_processing_charge":"No","date_published":"2026-06-01T00:00:00Z","acknowledgement":"We thank K. Burch, M. Buzzi, P. Cappellaro, A. Cavalleri, E. Demler, M. Eckstein, T. Giamarchi, D. Hsieh, H. Okamoto, D. Reis, T. Tohyama, P. Werner and A. Yacoby for insightful discussions. We thank B. Baxley for assistance with graphics. This work was primarily supported by the US Department of Energy, Office of Basic Energy Sciences, Early Career Award Program, under award no. DE-SC0022883 (D.R.B., F.G., T.M. and M.M.) and award no. DE-SC0024494 (D.C. and M.C.). D.C. and P.B.M.D.O. acknowledge funding from the NSF GRFP under grant nos. DGE-1845298 and DGE 2140743, respectively. The work performed at Brookhaven National Laboratory was supported by the US Department of Energy, Division of Materials Science, under contract no. DE-SC0012704. We acknowledge funding from the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) – 531215165 (Research Unit “OPTIMAL’). This work was supported by the Cluster of Excellence ‘Advanced Imaging of Matter’ (AIM) and the Max Planck-New York City Center for Non-Equilibrium Quantum Phenomena. The Flatiron Institute is a division of the Simons Foundation. Simulations were performed with computing resources granted by RWTH Aachen University under projects rwth0752 and rwth1258. We acknowledge computing time on the supercomputer JURECA52 at Forschungszentrum Jülich under the project ID enhancerg.","title":"Quantum control of Hubbard excitons","volume":25,"status":"public","type":"journal_article","publication_identifier":{"eissn":["1476-4660"],"issn":["1476-1122"]},"OA_type":"green","related_material":{"link":[{"url":"https://doi.org/10.1038/s41563-026-02697-1","relation":"erratum"}]},"supplementarymaterial":"yes","main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2601.20695","open_access":"1"}],"das_tickbox":"1","publisher":"Springer Nature","scopus_import":"1","citation":{"chicago":"Baykusheva, Denitsa Rangelova, Deven Carmichael, Clara S. Weber, I. Te Lu, Filippo Glerean, Tepie Meng, Pedro B.M. De Oliveira, et al. “Quantum Control of Hubbard Excitons.” <i>Nature Materials</i>. Springer Nature, 2026. <a href=\"https://doi.org/10.1038/s41563-026-02517-6\">https://doi.org/10.1038/s41563-026-02517-6</a>.","apa":"Baykusheva, D. R., Carmichael, D., Weber, C. S., Lu, I. T., Glerean, F., Meng, T., … Mitrano, M. (2026). Quantum control of Hubbard excitons. <i>Nature Materials</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41563-026-02517-6\">https://doi.org/10.1038/s41563-026-02517-6</a>","short":"D.R. Baykusheva, D. Carmichael, C.S. Weber, I.T. Lu, F. Glerean, T. Meng, P.B.M. De Oliveira, C.C. Homes, I.A. Zaliznyak, G.D. Gu, M.P.M. Dean, A. Rubio, D.M. Kennes, M. Claassen, M. Mitrano, Nature Materials 25 (2026) 937–943.","ista":"Baykusheva DR, Carmichael D, Weber CS, Lu IT, Glerean F, Meng T, De Oliveira PBM, Homes CC, Zaliznyak IA, Gu GD, Dean MPM, Rubio A, Kennes DM, Claassen M, Mitrano M. 2026. Quantum control of Hubbard excitons. Nature Materials. 25, 937–943.","mla":"Baykusheva, Denitsa Rangelova, et al. “Quantum Control of Hubbard Excitons.” <i>Nature Materials</i>, vol. 25, Springer Nature, 2026, pp. 937–43, doi:<a href=\"https://doi.org/10.1038/s41563-026-02517-6\">10.1038/s41563-026-02517-6</a>.","ieee":"D. R. Baykusheva <i>et al.</i>, “Quantum control of Hubbard excitons,” <i>Nature Materials</i>, vol. 25. Springer Nature, pp. 937–943, 2026.","ama":"Baykusheva DR, Carmichael D, Weber CS, et al. Quantum control of Hubbard excitons. <i>Nature Materials</i>. 2026;25:937-943. doi:<a href=\"https://doi.org/10.1038/s41563-026-02517-6\">10.1038/s41563-026-02517-6</a>"},"abstract":[{"text":"Quantum control of the many-body wavefunction is a central challenge in quantum materials research, as it could yield a precise control knob to manipulate emergent phenomena. Floquet engineering, the coherent dressing of quantum states with periodic non-resonant optical fields, has become an important strategy for quantum control. Most applications to solid-state systems have targeted weakly interacting or single-ion states, leaving the manipulation of many-body wavefunctions largely unexplored. Here we use Floquet engineering to achieve quantum control of a strongly correlated Hubbard exciton in the one-dimensional Mott insulator Sr2CuO3. A non-resonant mid-infrared optical field coherently dresses the exciton wavefunction, driving its rotation between bright and dark states. We use resonant third-harmonic generation to quantify ultrafast π/2 rotations on the Bloch sphere spanned by these exciton states. Our work advances the quest towards programmable control of correlated states and exciton-based quantum sensing.","lang":"eng"}],"oa_version":"Preprint"},{"_id":"21730","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","department":[{"_id":"StFr"}],"issue":"17","pmid":1,"page":"5314-5322","day":"06","researchdata_availability":"yes","corr_author":"1","publication":"Journal of Materials Chemistry B","year":"2026","date_created":"2026-04-13T07:45:26Z","article_type":"original","dataavailabilitystatement":"The data supporting this article have been included as part of the supplementary information (SI). The supplementary information includes all spectral profiles, plots and tabulated data. See DOI: https://doi.org/10.1039/d5tb02687c.","language":[{"iso":"eng"}],"author":[{"last_name":"Mondal","first_name":"Moumita","full_name":"Mondal, Moumita"},{"first_name":"Pravat","last_name":"Ghorai","full_name":"Ghorai, Pravat"},{"last_name":"Samadder","first_name":"Asmita","full_name":"Samadder, Asmita"},{"orcid":"0000-0003-2902-5319","first_name":"Stefan Alexander","last_name":"Freunberger","full_name":"Freunberger, Stefan Alexander","id":"A8CA28E6-CE23-11E9-AD2D-EC27E6697425"},{"full_name":"Banerjee, Priyabrata","last_name":"Banerjee","first_name":"Priyabrata"}],"publication_status":"published","doi":"10.1039/d5tb02687c","intvolume":"        14","scopus_import":"1","abstract":[{"lang":"eng","text":"Hydrogen peroxide (H2O2) is a crucial member of the reactive oxygen species (ROS) family, playing roles in cellular signalling and immune responses in human health. Moreover, it is a potential biomarker of diabetes when present in aberrant concentrations. Therefore, monitoring trace levels of H2O2 has become a research hotspot for analytical and sensor chemists. In this context, we report a rhodamine-based fluorescent probe (RN), which shows excellent fluorescent enhancement at 555 nm upon the addition of H2O2 along with a low limit of detection (LOD) of 0.67 ppm and fast response (∼2 min). The probe is highly selective for H2O2, showing no fluorescence enhancement with other ROS. RN is synthesised in a one-pot chemical reaction using rhodamine 6G (R6G) and 4,7,10-trioxa-1,13-tridecanediamine (TTDA). H2O2 detection in pre-treated milk samples proves its real-world viability. We found that RN shows low cytotoxicity, which allowed us to successfully explore its potential to monitor H2O2 generation in a diabetic L929 skin cell line and diabetic mice liver tissue. This result demonstrates promising features for assessing early diabetic progression through fluorescence imaging."}],"citation":{"ama":"Mondal M, Ghorai P, Samadder A, Freunberger SA, Banerjee P. H2O2 responsive rhodamine-based probe for monitoring early-stage diabetes diagnosis. <i>Journal of Materials Chemistry B</i>. 2026;14(17):5314-5322. doi:<a href=\"https://doi.org/10.1039/d5tb02687c\">10.1039/d5tb02687c</a>","ieee":"M. Mondal, P. Ghorai, A. Samadder, S. A. Freunberger, and P. Banerjee, “H2O2 responsive rhodamine-based probe for monitoring early-stage diabetes diagnosis,” <i>Journal of Materials Chemistry B</i>, vol. 14, no. 17. Royal Society of Chemistry, pp. 5314–5322, 2026.","mla":"Mondal, Moumita, et al. “H2O2 Responsive Rhodamine-Based Probe for Monitoring Early-Stage Diabetes Diagnosis.” <i>Journal of Materials Chemistry B</i>, vol. 14, no. 17, Royal Society of Chemistry, 2026, pp. 5314–22, doi:<a href=\"https://doi.org/10.1039/d5tb02687c\">10.1039/d5tb02687c</a>.","ista":"Mondal M, Ghorai P, Samadder A, Freunberger SA, Banerjee P. 2026. H2O2 responsive rhodamine-based probe for monitoring early-stage diabetes diagnosis. Journal of Materials Chemistry B. 14(17), 5314–5322.","short":"M. Mondal, P. Ghorai, A. Samadder, S.A. Freunberger, P. Banerjee, Journal of Materials Chemistry B 14 (2026) 5314–5322.","apa":"Mondal, M., Ghorai, P., Samadder, A., Freunberger, S. A., &#38; Banerjee, P. (2026). H2O2 responsive rhodamine-based probe for monitoring early-stage diabetes diagnosis. <i>Journal of Materials Chemistry B</i>. Royal Society of Chemistry. <a href=\"https://doi.org/10.1039/d5tb02687c\">https://doi.org/10.1039/d5tb02687c</a>","chicago":"Mondal, Moumita, Pravat Ghorai, Asmita Samadder, Stefan Alexander Freunberger, and Priyabrata Banerjee. “H2O2 Responsive Rhodamine-Based Probe for Monitoring Early-Stage Diabetes Diagnosis.” <i>Journal of Materials Chemistry B</i>. Royal Society of Chemistry, 2026. <a href=\"https://doi.org/10.1039/d5tb02687c\">https://doi.org/10.1039/d5tb02687c</a>."},"oa_version":"None","publisher":"Royal Society of Chemistry","das_tickbox":"1","OA_type":"closed access","supplementarymaterial":"yes","type":"journal_article","publication_identifier":{"eissn":["2050-7518"],"issn":["2050-750X"]},"status":"public","volume":14,"acknowledged_ssus":[{"_id":"LifeSc"}],"title":"H2O2 responsive rhodamine-based probe for monitoring early-stage diabetes diagnosis","article_processing_charge":"No","date_published":"2026-05-06T00:00:00Z","acknowledgement":"MM acknowledges the Government of India for DST-INSPIRE\r\nfellowship [IF200389] and Federal Ministry of Education, Science and Research (BMBWF) and the OeAD – Austria’s Agency for Education and Internationalisation for an Ernst Mach Grant, weltweit (grant number MPC-2024-01518) for research internship at ISTA. The Scientific Service Units of ISTA supported this research through resources provided by the Lab Support Facility. PG acknowledges the ANRF, India, for his NPDF fellowship (File no. PDF/2022/001960). PB acknowledges ANRF, India, for the SERB-CRG sponsored project GAP-240712 (vide reference no. CRG/2022/001679).","external_id":{"pmid":["41958432"]},"date_updated":"2026-07-27T12:36:05Z","quality_controlled":"1","month":"05"},{"user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","_id":"21854","department":[{"_id":"GradSch"},{"_id":"DaAl"}],"publisher_comment":"In reference to IEEE copyrighted material which is used with permission in this thesis, the IEEE does not endorse any of ISTA's products or services. Internal or personal use of this material is permitted. If interested in reprinting/republishing IEEE copyrighted material for advertising or promotional purposes or for creating new collective works for resale or redistribution, please go to http://www.ieee.org/publications_standards/publications/rights/rights_link.html to learn how to obtain a License from RightsLink. If applicable, University Microfilms and/or ProQuest Library, or the Archives of Canada may supply single copies of the dissertation.","page":"237","supervisor":[{"first_name":"Dan-Adrian","last_name":"Alistarh","orcid":"0000-0003-3650-940X","id":"4A899BFC-F248-11E8-B48F-1D18A9856A87","full_name":"Alistarh, Dan-Adrian"}],"has_accepted_license":"1","day":"11","corr_author":"1","OA_place":"publisher","year":"2026","date_created":"2026-05-11T08:43:22Z","alternative_title":["ISTA Thesis"],"file_date_updated":"2026-05-13T13:10:48Z","degree_awarded":"PhD","ddc":["000"],"language":[{"iso":"eng"}],"author":[{"last_name":"Iofinova","first_name":"Eugenia B","orcid":"0000-0002-7778-3221","id":"f9a17499-f6e0-11ea-865d-fdf9a3f77117","full_name":"Iofinova, Eugenia B"}],"oa":1,"publication_status":"published","file":[{"date_updated":"2026-05-11T08:36:01Z","content_type":"application/zip","relation":"source_file","file_size":28479571,"file_id":"21856","date_created":"2026-05-11T08:36:01Z","file_name":"EIofinova_thesis_FinalVersion.zip","access_level":"closed","checksum":"2e148dad920e3f9b7c32796e0ba2e5f7","creator":"eiofinov"},{"relation":"main_file","content_type":"application/pdf","date_updated":"2026-05-13T13:10:48Z","file_size":18137757,"success":1,"file_id":"21877","date_created":"2026-05-13T13:10:48Z","file_name":"2026_Iofinova_Eugenia_Thesis.pdf","access_level":"open_access","checksum":"b10c2933f386f532b2dbf28b19c5525c","creator":"eiofinov"}],"project":[{"name":"Vienna Graduate School on Computational Optimization","grant_number":"W1260-N35","_id":"9B9290DE-BA93-11EA-9121-9846C619BF3A"}],"doi":"10.15479/AT-ISTA-21854","abstract":[{"text":"As neural-network-based models grow both in size and popularity, interest has grown in making the models smaller and more efficient to train. To that end, many methods have been proposed to prune models by reducing their number of nonzero parameters. Additionally, parameter-efficient fine-tuning, in which a much smaller number of parameters than the total contained in the model is updated during training, has become very popular, especially in the space of Large Language Models. At the same time, the increasingly routine deployment of machine learning in real-world applications has spurred a drive to make them more trustworthy - in the sense of, among other things, being unbiased, interpretable, and editable. In this thesis, we examine the interplay between efficiency and trustworthiness.\r\n\r\nFirst, we analyze the effects of model pruning on bias in computer vision models, demonstrating that increased sparsity leads to greater bias, largely as a function of increased model uncertainty in marginal cases. Based on this observation, we propose several bias mitigation techniques. Then, we demonstrate that example-specific model pruning can improve model interpretation methods while improving pruning efficiency to make example-specific model pruning feasible in real time. Then, we investigate the effectiveness of parameter-efficient and data-efficient model personalization via fine-tuning, demonstrating that it is highly feasible with very small computational and data resources. Finally, we consider efficiency in editing model knowledge using a custom synthetic data framework, demonstrating that parameter-efficient, low-rank fine-tuning frequently outperforms full-rank fine-tuning, and, additionally, that restricting which model blocks are fine-tuned frequently improves results. Together, the results in this thesis provide new insights and techniques for combining trustworthiness and efficiency during neural network inference and training.\r\n\r\n","lang":"eng"}],"citation":{"short":"E.B. Iofinova, On the Utility and Effects of Efficiency in Artificial Neural Networks, Institute of Science and Technology Austria, 2026.","ista":"Iofinova EB. 2026. On the utility and effects of efficiency in artificial neural networks. Institute of Science and Technology Austria.","mla":"Iofinova, Eugenia B. <i>On the Utility and Effects of Efficiency in Artificial Neural Networks</i>. Institute of Science and Technology Austria, 2026, doi:<a href=\"https://doi.org/10.15479/AT-ISTA-21854\">10.15479/AT-ISTA-21854</a>.","chicago":"Iofinova, Eugenia B. “On the Utility and Effects of Efficiency in Artificial Neural Networks.” Institute of Science and Technology Austria, 2026. <a href=\"https://doi.org/10.15479/AT-ISTA-21854\">https://doi.org/10.15479/AT-ISTA-21854</a>.","apa":"Iofinova, E. B. (2026). <i>On the utility and effects of efficiency in artificial neural networks</i>. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT-ISTA-21854\">https://doi.org/10.15479/AT-ISTA-21854</a>","ama":"Iofinova EB. On the utility and effects of efficiency in artificial neural networks. 2026. doi:<a href=\"https://doi.org/10.15479/AT-ISTA-21854\">10.15479/AT-ISTA-21854</a>","ieee":"E. B. Iofinova, “On the utility and effects of efficiency in artificial neural networks,” Institute of Science and Technology Austria, 2026."},"oa_version":"Published Version","publisher":"Institute of Science and Technology Austria","das_tickbox":"1","related_material":{"record":[{"relation":"part_of_dissertation","id":"14771","status":"public"},{"id":"18121","relation":"part_of_dissertation","status":"public"},{"status":"public","relation":"part_of_dissertation","id":"21858"},{"id":"21859","relation":"part_of_dissertation","status":"public"},{"relation":"part_of_dissertation","id":"21857","status":"public"}]},"type":"dissertation","publication_identifier":{"issn":["2663-337X"]},"doi_confirm":"1","status":"public","acknowledged_ssus":[{"_id":"ScienComp"}],"title":"On the utility and effects of efficiency in artificial neural networks","article_processing_charge":"No","date_published":"2026-05-11T00:00:00Z","acknowledgement":"The research in this Ph.D. was funded in whole\r\nor in part by the Austrian Science Fund (FWF) W1260-N35 (Vienna Graduate School for\r\nComputational Optimization). For open access purposes the author has applied a CC BY\r\npublic copyright license to any author accepted manuscript version arising from this submission\r\nwherever possible. Additionally, I am grateful to Alois Schlögl, Waleed Khalid, and the rest of\r\nthe ISTA Scientific Computing team for building and maintaining the infrastructure I used\r\nto run experiments. I’m also deeply grateful to the Alistarh group’s administrative assistant,\r\nChristine Francois, who always deals with our nonsense with common sense and a smile.\r\n","date_updated":"2026-07-27T12:50:04Z","month":"05"}]