[{"article_processing_charge":"No","publication_identifier":{"issn":["0097-5397"],"eissn":["1095-7111"]},"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","title":"Simple, deterministic, constant-round coloring in congested clique and MPC","keyword":["General Mathematics","General Computer Science"],"day":"01","department":[{"_id":"DaAl"}],"quality_controlled":"1","_id":"15271","date_published":"2021-01-01T00:00:00Z","acknowledgement":"The first author was partially supported by the Centre for Discrete Mathematics and its Applications, by the IBM Faculty Award, and by the EPSRC award EP/N011163/1. The second author was partially supported by the European Union’s Horizon 2020 research and innovation program under the Marie Sklodowska-Curie grant agreement 754411. The first and third authors were partially supported by a Weizmann-UK Making Connections grant.","isi":1,"doi":"10.1137/20m1366502","publisher":"Society for Industrial and Applied Mathematics","author":[{"last_name":"Czumaj","first_name":"Artur","full_name":"Czumaj, Artur"},{"last_name":"Davies","first_name":"Peter","orcid":"0000-0002-5646-9524","id":"11396234-BB50-11E9-B24C-90FCE5697425","full_name":"Davies, Peter"},{"last_name":"Parter","first_name":"Merav","full_name":"Parter, Merav"}],"page":"1603-1626","year":"2021","publication_status":"published","volume":50,"issue":"5","month":"01","type":"journal_article","publication":"SIAM Journal on Computing","date_created":"2024-04-03T07:53:22Z","oa_version":"None","scopus_import":"1","status":"public","external_id":{"isi":["000713008600004"]},"abstract":[{"text":"We settle the complexity of the (∆ + 1)-coloring and (∆ + 1)-list coloring problems intheCONGESTED CLIQUEmodel by presenting a simpledeterministicalgorithm for both problemsrunning in a constant number of rounds. This matches the complexity of the recent breakthroughrandomizedconstant-round (∆ + 1)-list coloring algorithm due to Chang et al. [Proceedings of the38th ACM Symposium on Principles of Distributed Computing, 2019] and significantly improvesupon the state-of-the-artO(log ∆)-round deterministic (∆ + 1)-coloring bound of Parter [Proceed-ings of the 45th Annual International Colloquium on Automata, Languages and Programming]. Aremarkable property of our algorithm is its simplicity. Whereas the state-of-the-artrandomizedal-gorithms for this problem are based on the quite involved local coloring algorithm of Chang, Li, andPettie [Proceedings of the 50th Annual ACM SIGACT Symposium on Theory of Computing, 2018],our algorithm can be described in just a few lines. At a high level, it applies a careful derandomiza-tion of a recursive procedure which partitions the nodes and their respective palettes into separatebins. We show that afterO(1) recursion steps, the remaining uncolored subgraph within each bin haslinear size and thus can be solved locally by collecting it to a single node. This algorithm can alsobe implemented in the massively parallel computation (MPC) model provided that each machine haslinear (inn, the number of nodes in the input graph) space. We also show an extension of our algo-rithm to theMPCregime, in which machines havesublinearspace: we present the first deterministic(∆ + 1)-list coloring algorithm designed for sublinear-spaceMPC, which runs inO(log ∆ + log logn)rounds.","lang":"eng"}],"language":[{"iso":"eng"}],"ec_funded":1,"article_type":"original","citation":{"apa":"Czumaj, A., Davies, P., & Parter, M. (2021). Simple, deterministic, constant-round coloring in congested clique and MPC. SIAM Journal on Computing. Society for Industrial and Applied Mathematics. https://doi.org/10.1137/20m1366502","ista":"Czumaj A, Davies P, Parter M. 2021. Simple, deterministic, constant-round coloring in congested clique and MPC. SIAM Journal on Computing. 50(5), 1603–1626.","ieee":"A. Czumaj, P. Davies, and M. Parter, “Simple, deterministic, constant-round coloring in congested clique and MPC,” SIAM Journal on Computing, vol. 50, no. 5. Society for Industrial and Applied Mathematics, pp. 1603–1626, 2021.","ama":"Czumaj A, Davies P, Parter M. Simple, deterministic, constant-round coloring in congested clique and MPC. SIAM Journal on Computing. 2021;50(5):1603-1626. doi:10.1137/20m1366502","mla":"Czumaj, Artur, et al. “Simple, Deterministic, Constant-Round Coloring in Congested Clique and MPC.” SIAM Journal on Computing, vol. 50, no. 5, Society for Industrial and Applied Mathematics, 2021, pp. 1603–26, doi:10.1137/20m1366502.","short":"A. Czumaj, P. Davies, M. Parter, SIAM Journal on Computing 50 (2021) 1603–1626.","chicago":"Czumaj, Artur, Peter Davies, and Merav Parter. “Simple, Deterministic, Constant-Round Coloring in Congested Clique and MPC.” SIAM Journal on Computing. Society for Industrial and Applied Mathematics, 2021. https://doi.org/10.1137/20m1366502."},"intvolume":" 50","date_updated":"2025-09-10T10:14:11Z","project":[{"grant_number":"754411","name":"ISTplus - Postdoctoral Fellowships","call_identifier":"H2020","_id":"260C2330-B435-11E9-9278-68D0E5697425"}]},{"keyword":["Cancer Research","Genetics (clinical)","Genetics","Molecular Biology","Ecology","Evolution","Behavior and Systematics"],"day":"01","department":[{"_id":"MaDe"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa":1,"title":"The CATP-8/P5A-type ATPase functions in multiple pathways during neuronal patterning","article_processing_charge":"No","publication_identifier":{"issn":["1553-7404"]},"tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"file":[{"file_size":4224934,"checksum":"7352b195e4db6d404f702fe6ad8b55ad","success":1,"file_id":"15308","file_name":"2021_PlosGenetics_Tang.pdf","date_updated":"2024-04-10T08:53:43Z","creator":"dernst","relation":"main_file","access_level":"open_access","date_created":"2024-04-10T08:53:43Z","content_type":"application/pdf"}],"doi":"10.1371/journal.pgen.1009475","publisher":"Public Library of Science","_id":"15272","date_published":"2021-07-01T00:00:00Z","quality_controlled":"1","article_number":"e1009475","issue":"7","volume":17,"month":"07","year":"2021","publication_status":"published","file_date_updated":"2024-04-10T08:53:43Z","pmid":1,"author":[{"last_name":"Tang","first_name":"Leo T. H.","full_name":"Tang, Leo T. H."},{"last_name":"Trivedi","first_name":"Meera","full_name":"Trivedi, Meera"},{"full_name":"Freund, Jenna","last_name":"Freund","first_name":"Jenna"},{"last_name":"Salazar","first_name":"Christopher J.","full_name":"Salazar, Christopher J."},{"last_name":"Rahman","first_name":"Maisha","full_name":"Rahman, Maisha"},{"last_name":"Ramirez","first_name":"Nelson","full_name":"Ramirez, Nelson","id":"39831956-E4FE-11E9-85DE-0DC7E5697425"},{"first_name":"Garrett","last_name":"Lee","full_name":"Lee, Garrett"},{"last_name":"Wang","first_name":"Yu","full_name":"Wang, Yu"},{"first_name":"Barth D.","last_name":"Grant","full_name":"Grant, Barth D."},{"full_name":"Bülow, Hannes E.","first_name":"Hannes E.","last_name":"Bülow"}],"intvolume":" 17","date_updated":"2024-04-10T08:57:16Z","ddc":["570"],"citation":{"short":"L.T.H. Tang, M. Trivedi, J. Freund, C.J. Salazar, M. Rahman, N. Ramirez, G. Lee, Y. Wang, B.D. Grant, H.E. Bülow, PLOS Genetics 17 (2021).","mla":"Tang, Leo T. H., et al. “The CATP-8/P5A-Type ATPase Functions in Multiple Pathways during Neuronal Patterning.” PLOS Genetics, vol. 17, no. 7, e1009475, Public Library of Science, 2021, doi:10.1371/journal.pgen.1009475.","ama":"Tang LTH, Trivedi M, Freund J, et al. The CATP-8/P5A-type ATPase functions in multiple pathways during neuronal patterning. PLOS Genetics. 2021;17(7). doi:10.1371/journal.pgen.1009475","ista":"Tang LTH, Trivedi M, Freund J, Salazar CJ, Rahman M, Ramirez N, Lee G, Wang Y, Grant BD, Bülow HE. 2021. The CATP-8/P5A-type ATPase functions in multiple pathways during neuronal patterning. PLOS Genetics. 17(7), e1009475.","ieee":"L. T. H. Tang et al., “The CATP-8/P5A-type ATPase functions in multiple pathways during neuronal patterning,” PLOS Genetics, vol. 17, no. 7. Public Library of Science, 2021.","apa":"Tang, L. T. H., Trivedi, M., Freund, J., Salazar, C. J., Rahman, M., Ramirez, N., … Bülow, H. E. (2021). The CATP-8/P5A-type ATPase functions in multiple pathways during neuronal patterning. PLOS Genetics. Public Library of Science. https://doi.org/10.1371/journal.pgen.1009475","chicago":"Tang, Leo T. H., Meera Trivedi, Jenna Freund, Christopher J. Salazar, Maisha Rahman, Nelson Ramirez, Garrett Lee, Yu Wang, Barth D. Grant, and Hannes E. Bülow. “The CATP-8/P5A-Type ATPase Functions in Multiple Pathways during Neuronal Patterning.” PLOS Genetics. Public Library of Science, 2021. https://doi.org/10.1371/journal.pgen.1009475."},"article_type":"original","language":[{"iso":"eng"}],"oa_version":"Published Version","publication":"PLOS Genetics","date_created":"2024-04-03T07:57:12Z","type":"journal_article","abstract":[{"text":"The assembly of neuronal circuits involves the migrations of neurons from their place of birth to their final location in the nervous system, as well as the coordinated growth and patterning of axons and dendrites. In screens for genes required for patterning of the nervous system, we identified the catp-8/P5A-ATPase as an important regulator of neural patterning. P5A-ATPases are part of the P-type ATPases, a family of proteins known to serve a conserved function as transporters of ions, lipids and polyamines in unicellular eukaryotes, plants, and humans. While the function of many P-type ATPases is relatively well understood, the function of P5A-ATPases in metazoans remained elusive. We show here, that the Caenorhabditis elegans ortholog catp-8/P5A-ATPase is required for defined aspects of nervous system development. Specifically, the catp-8/P5A-ATPase serves functions in shaping the elaborately sculpted dendritic trees of somatosensory PVD neurons. Moreover, catp-8/P5A-ATPase is required for axonal guidance and repulsion at the midline, as well as embryonic and postembryonic neuronal migrations. Interestingly, not all axons at the midline require catp-8/P5A-ATPase, although the axons run in the same fascicles and navigate the same space. Similarly, not all neuronal migrations require catp-8/P5A-ATPase. A CATP-8/P5A-ATPase reporter is localized to the ER in most, if not all, tissues and catp-8/P5A-ATPase can function both cell-autonomously and non-autonomously to regulate neuronal development. Genetic analyses establish that catp-8/P5A-ATPase can function in multiple pathways, including the Menorin pathway, previously shown to control dendritic patterning in PVD, and Wnt signaling, which functions to control neuronal migrations. Lastly, we show that catp-8/P5A-ATPase is required for localizing select transmembrane proteins necessary for dendrite morphogenesis. Collectively, our studies suggest that catp-8/P5A-ATPase serves diverse, yet specific, roles in different genetic pathways and may be involved in the regulation or localization of transmembrane and secreted proteins to specific subcellular compartments.","lang":"eng"}],"has_accepted_license":"1","status":"public","external_id":{"pmid":["34197450"]}},{"publication_status":"published","file_date_updated":"2024-04-09T11:13:07Z","year":"2021","month":"02","volume":10,"author":[{"last_name":"Balmer","first_name":"Timothy S","full_name":"Balmer, Timothy S"},{"full_name":"Borges Merjane, Carolina","id":"4305C450-F248-11E8-B48F-1D18A9856A87","last_name":"Borges Merjane","orcid":"0000-0003-0005-401X","first_name":"Carolina"},{"full_name":"Trussell, Laurence O","last_name":"Trussell","first_name":"Laurence O"}],"pmid":1,"date_updated":"2024-04-09T11:15:01Z","ddc":["570"],"intvolume":" 10","abstract":[{"text":"Synapses of glutamatergic mossy fibers (MFs) onto cerebellar unipolar brush cells (UBCs) generate slow excitatory (ON) or inhibitory (OFF) postsynaptic responses dependent on the complement of glutamate receptors expressed on the UBC’s large dendritic brush. Using mouse brain slice recording and computational modeling of synaptic transmission, we found that substantial glutamate is maintained in the UBC synaptic cleft, sufficient to modify spontaneous firing in OFF UBCs and tonically desensitize AMPARs of ON UBCs. The source of this ambient glutamate was spontaneous, spike-independent exocytosis from the MF terminal, and its level was dependent on activity of glutamate transporters EAAT1–2. Increasing levels of ambient glutamate shifted the polarity of evoked synaptic responses in ON UBCs and altered the phase of responses to in vivo-like synaptic activity. Unlike classical fast synapses, receptors at the UBC synapse are virtually always exposed to a significant level of glutamate, which varies in a graded manner during transmission.","lang":"eng"}],"has_accepted_license":"1","status":"public","external_id":{"pmid":["33616036"]},"publication":"eLife","oa_version":"Published Version","date_created":"2024-04-03T07:58:11Z","type":"journal_article","article_type":"original","citation":{"chicago":"Balmer, Timothy S, Carolina Borges Merjane, and Laurence O Trussell. “Incomplete Removal of Extracellular Glutamate Controls Synaptic Transmission and Integration at a Cerebellar Synapse.” ELife. eLife Sciences Publications, 2021. https://doi.org/10.7554/elife.63819.","mla":"Balmer, Timothy S., et al. “Incomplete Removal of Extracellular Glutamate Controls Synaptic Transmission and Integration at a Cerebellar Synapse.” ELife, vol. 10, e63819, eLife Sciences Publications, 2021, doi:10.7554/elife.63819.","short":"T.S. Balmer, C. Borges Merjane, L.O. Trussell, ELife 10 (2021).","apa":"Balmer, T. S., Borges Merjane, C., & Trussell, L. O. (2021). Incomplete removal of extracellular glutamate controls synaptic transmission and integration at a cerebellar synapse. ELife. eLife Sciences Publications. https://doi.org/10.7554/elife.63819","ista":"Balmer TS, Borges Merjane C, Trussell LO. 2021. Incomplete removal of extracellular glutamate controls synaptic transmission and integration at a cerebellar synapse. eLife. 10, e63819.","ieee":"T. S. Balmer, C. Borges Merjane, and L. O. Trussell, “Incomplete removal of extracellular glutamate controls synaptic transmission and integration at a cerebellar synapse,” eLife, vol. 10. eLife Sciences Publications, 2021.","ama":"Balmer TS, Borges Merjane C, Trussell LO. Incomplete removal of extracellular glutamate controls synaptic transmission and integration at a cerebellar synapse. eLife. 2021;10. doi:10.7554/elife.63819"},"language":[{"iso":"eng"}],"oa":1,"title":"Incomplete removal of extracellular glutamate controls synaptic transmission and integration at a cerebellar synapse","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","department":[{"_id":"PeJo"}],"keyword":["General Immunology and Microbiology","General Biochemistry","Genetics and Molecular Biology","General Medicine","General Neuroscience"],"day":"22","publication_identifier":{"issn":["2050-084X"]},"tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"article_processing_charge":"Yes","publisher":"eLife Sciences Publications","doi":"10.7554/elife.63819","file":[{"file_size":6997954,"file_name":"2021_eLife_Balmer.pdf","file_id":"15307","date_updated":"2024-04-09T11:13:07Z","checksum":"bbd4de2e54b7fbc11fba14f59e87fe3f","success":1,"access_level":"open_access","creator":"dernst","relation":"main_file","content_type":"application/pdf","date_created":"2024-04-09T11:13:07Z"}],"article_number":"e63819","quality_controlled":"1","_id":"15273","date_published":"2021-02-22T00:00:00Z"},{"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa":1,"title":"Cysteine mutants of the major facilitator superfamily-type transporter CcoA provide insight into copper import","keyword":["Virology","Microbiology"],"day":"31","department":[{"_id":"LeSa"}],"article_processing_charge":"No","publication_identifier":{"issn":["2150-7511"]},"tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"doi":"10.1128/mbio.01567-21","file":[{"file_name":"2021_mBio_KhalfaouiHassani.pdf","file_id":"15306","date_updated":"2024-04-09T10:45:11Z","checksum":"2f6a57637cb3162eaeeb155a5b031e76","success":1,"file_size":3383398,"date_created":"2024-04-09T10:45:11Z","content_type":"application/pdf","access_level":"open_access","creator":"dernst","relation":"main_file"}],"publisher":"American Society for Microbiology","date_published":"2021-08-31T00:00:00Z","_id":"15274","quality_controlled":"1","article_number":"e01567","year":"2021","publication_status":"published","file_date_updated":"2024-04-09T10:45:11Z","issue":"4","volume":12,"month":"08","author":[{"first_name":"Bahia","last_name":"Khalfaoui-Hassani","full_name":"Khalfaoui-Hassani, Bahia"},{"id":"D560034C-10C4-11EA-ABF4-A4B43DDC885E","full_name":"Trasnea, Petru Iulian","last_name":"Trasnea","first_name":"Petru Iulian"},{"full_name":"Steimle, Stefan","last_name":"Steimle","first_name":"Stefan"},{"full_name":"Koch, Hans-Georg","last_name":"Koch","first_name":"Hans-Georg"},{"full_name":"Daldal, Fevzi","first_name":"Fevzi","last_name":"Daldal"}],"pmid":1,"intvolume":" 12","date_updated":"2024-04-09T10:47:16Z","ddc":["570"],"oa_version":"Published Version","publication":"mBio","date_created":"2024-04-03T07:59:04Z","type":"journal_article","abstract":[{"text":"Copper (Cu) is a redox-active micronutrient that is both essential and toxic. Its cellular homeostasis is critical for supporting cuproprotein maturation while avoiding excessive oxidative stress. The Cu importer CcoA is the prototype of the widespread CalT subfamily of the MFS-type transporters. Hence, understanding its molecular mechanism of function is significant. Here, we show that CcoA undergoes a thiol:disulfide oxidoreduction cycle, which is important for its Cu import activity.","lang":"eng"}],"status":"public","external_id":{"pmid":["34281385"]},"has_accepted_license":"1","article_type":"original","citation":{"chicago":"Khalfaoui-Hassani, Bahia, Petru Iulian Trasnea, Stefan Steimle, Hans-Georg Koch, and Fevzi Daldal. “Cysteine Mutants of the Major Facilitator Superfamily-Type Transporter CcoA Provide Insight into Copper Import.” MBio. American Society for Microbiology, 2021. https://doi.org/10.1128/mbio.01567-21.","short":"B. Khalfaoui-Hassani, P.I. Trasnea, S. Steimle, H.-G. Koch, F. Daldal, MBio 12 (2021).","mla":"Khalfaoui-Hassani, Bahia, et al. “Cysteine Mutants of the Major Facilitator Superfamily-Type Transporter CcoA Provide Insight into Copper Import.” MBio, vol. 12, no. 4, e01567, American Society for Microbiology, 2021, doi:10.1128/mbio.01567-21.","ista":"Khalfaoui-Hassani B, Trasnea PI, Steimle S, Koch H-G, Daldal F. 2021. Cysteine mutants of the major facilitator superfamily-type transporter CcoA provide insight into copper import. mBio. 12(4), e01567.","ieee":"B. Khalfaoui-Hassani, P. I. Trasnea, S. Steimle, H.-G. Koch, and F. Daldal, “Cysteine mutants of the major facilitator superfamily-type transporter CcoA provide insight into copper import,” mBio, vol. 12, no. 4. American Society for Microbiology, 2021.","ama":"Khalfaoui-Hassani B, Trasnea PI, Steimle S, Koch H-G, Daldal F. Cysteine mutants of the major facilitator superfamily-type transporter CcoA provide insight into copper import. mBio. 2021;12(4). doi:10.1128/mbio.01567-21","apa":"Khalfaoui-Hassani, B., Trasnea, P. I., Steimle, S., Koch, H.-G., & Daldal, F. (2021). Cysteine mutants of the major facilitator superfamily-type transporter CcoA provide insight into copper import. MBio. American Society for Microbiology. https://doi.org/10.1128/mbio.01567-21"},"language":[{"iso":"eng"}]},{"citation":{"mla":"Fox, Jacob, et al. “Bounded VC-Dimension Implies the Schur-Erdős Conjecture.” Combinatorica, vol. 41, no. 6, Springer Nature, 2021, pp. 803–13, doi:10.1007/s00493-021-4530-9.","short":"J. Fox, J. Pach, A. Suk, Combinatorica 41 (2021) 803–813.","apa":"Fox, J., Pach, J., & Suk, A. (2021). Bounded VC-dimension implies the Schur-Erdős conjecture. Combinatorica. Springer Nature. https://doi.org/10.1007/s00493-021-4530-9","ieee":"J. Fox, J. Pach, and A. Suk, “Bounded VC-dimension implies the Schur-Erdős conjecture,” Combinatorica, vol. 41, no. 6. Springer Nature, pp. 803–813, 2021.","ista":"Fox J, Pach J, Suk A. 2021. Bounded VC-dimension implies the Schur-Erdős conjecture. Combinatorica. 41(6), 803–813.","ama":"Fox J, Pach J, Suk A. Bounded VC-dimension implies the Schur-Erdős conjecture. Combinatorica. 2021;41(6):803-813. doi:10.1007/s00493-021-4530-9","chicago":"Fox, Jacob, János Pach, and Andrew Suk. “Bounded VC-Dimension Implies the Schur-Erdős Conjecture.” Combinatorica. Springer Nature, 2021. https://doi.org/10.1007/s00493-021-4530-9."},"article_type":"original","language":[{"iso":"eng"}],"oa_version":"Preprint","publication":"Combinatorica","date_created":"2024-04-03T07:59:57Z","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.1912.02342"}],"type":"journal_article","abstract":[{"lang":"eng","text":"In 1916, Schur introduced the Ramsey number r(3; m), which is the minimum integer n > 1 such that for any m-coloring of the edges of the complete graph Kn, there is a monochromatic copy of K3. He showed that r(3; m) ≤ O(m!), and a simple construction demonstrates that r(3; m) ≥ 2Ω(m). An old conjecture of Erdős states that r(3; m) = 2Θ(m). In this note, we prove the conjecture for m-colorings with bounded VC-dimension, that is, for m-colorings with the property that the set system induced by the neighborhoods of the vertices with respect to each color class has bounded VC-dimension."}],"status":"public","external_id":{"arxiv":["1912.02342"]},"intvolume":" 41","date_updated":"2024-04-09T10:40:08Z","arxiv":1,"page":"803-813","author":[{"full_name":"Fox, Jacob","last_name":"Fox","first_name":"Jacob"},{"last_name":"Pach","first_name":"János","full_name":"Pach, János","id":"E62E3130-B088-11EA-B919-BF823C25FEA4"},{"last_name":"Suk","first_name":"Andrew","full_name":"Suk, Andrew"}],"issue":"6","volume":41,"month":"11","year":"2021","publication_status":"published","_id":"15275","quality_controlled":"1","date_published":"2021-11-20T00:00:00Z","doi":"10.1007/s00493-021-4530-9","publisher":"Springer Nature","article_processing_charge":"No","publication_identifier":{"issn":["0209-9683"],"eissn":["1439-6912"]},"day":"20","keyword":["Computational Mathematics","Discrete Mathematics and Combinatorics"],"department":[{"_id":"HeEd"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa":1,"title":"Bounded VC-dimension implies the Schur-Erdős conjecture"},{"intvolume":" 17","date_updated":"2024-04-09T10:26:12Z","ddc":["580"],"citation":{"chicago":"Navarrete, Fernando, Nenad Grujic, Alexandra Stirnberg, Indira Saado, David Aleksza, Michelle C Gallei, Hazem Adi, et al. “The Pleiades Are a Cluster of Fungal Effectors That Inhibit Host Defenses.” PLOS Pathogens. Public Library of Science, 2021. https://doi.org/10.1371/journal.ppat.1009641.","mla":"Navarrete, Fernando, et al. “The Pleiades Are a Cluster of Fungal Effectors That Inhibit Host Defenses.” PLOS Pathogens, vol. 17, no. 6, e1009641, Public Library of Science, 2021, doi:10.1371/journal.ppat.1009641.","short":"F. Navarrete, N. Grujic, A. Stirnberg, I. Saado, D. Aleksza, M.C. Gallei, H. Adi, A. Alcântara, M. Khan, J. Bindics, M. Trujillo, A. Djamei, PLOS Pathogens 17 (2021).","apa":"Navarrete, F., Grujic, N., Stirnberg, A., Saado, I., Aleksza, D., Gallei, M. C., … Djamei, A. (2021). The Pleiades are a cluster of fungal effectors that inhibit host defenses. PLOS Pathogens. Public Library of Science. https://doi.org/10.1371/journal.ppat.1009641","ista":"Navarrete F, Grujic N, Stirnberg A, Saado I, Aleksza D, Gallei MC, Adi H, Alcântara A, Khan M, Bindics J, Trujillo M, Djamei A. 2021. The Pleiades are a cluster of fungal effectors that inhibit host defenses. PLOS Pathogens. 17(6), e1009641.","ama":"Navarrete F, Grujic N, Stirnberg A, et al. The Pleiades are a cluster of fungal effectors that inhibit host defenses. PLOS Pathogens. 2021;17(6). doi:10.1371/journal.ppat.1009641","ieee":"F. Navarrete et al., “The Pleiades are a cluster of fungal effectors that inhibit host defenses,” PLOS Pathogens, vol. 17, no. 6. Public Library of Science, 2021."},"article_type":"original","language":[{"iso":"eng"}],"publication":"PLOS Pathogens","oa_version":"Published Version","date_created":"2024-04-03T08:00:34Z","type":"journal_article","abstract":[{"lang":"eng","text":"Biotrophic plant pathogens secrete effector proteins to manipulate the host physiology. Effectors suppress defenses and induce an environment favorable to disease development. Sequence-based prediction of effector function is impeded by their rapid evolution rate. In the maize pathogen Ustilago maydis, effector-coding genes frequently organize in clusters. Here we describe the functional characterization of the pleiades, a cluster of ten effector genes, by analyzing the micro- and macroscopic phenotype of the cluster deletion and expressing these proteins in planta. Deletion of the pleiades leads to strongly impaired virulence and accumulation of reactive oxygen species (ROS) in infected tissue. Eight of the Pleiades suppress the production of ROS upon perception of pathogen associated molecular patterns (PAMPs). Although functionally redundant, the Pleiades target different host components. The paralogs Taygeta1 and Merope1 suppress ROS production in either the cytoplasm or nucleus, respectively. Merope1 targets and promotes the auto-ubiquitination activity of RFI2, a conserved family of E3 ligases that regulates the production of PAMP-triggered ROS burst in plants."}],"status":"public","external_id":{"pmid":["34166468"]},"has_accepted_license":"1","issue":"6","volume":17,"month":"06","year":"2021","publication_status":"published","file_date_updated":"2024-04-09T10:24:43Z","pmid":1,"author":[{"last_name":"Navarrete","first_name":"Fernando","full_name":"Navarrete, Fernando"},{"full_name":"Grujic, Nenad","last_name":"Grujic","first_name":"Nenad"},{"first_name":"Alexandra","last_name":"Stirnberg","full_name":"Stirnberg, Alexandra"},{"first_name":"Indira","last_name":"Saado","full_name":"Saado, Indira"},{"last_name":"Aleksza","first_name":"David","full_name":"Aleksza, David"},{"full_name":"Gallei, Michelle C","id":"35A03822-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-1286-7368","first_name":"Michelle C","last_name":"Gallei"},{"first_name":"Hazem","last_name":"Adi","full_name":"Adi, Hazem"},{"last_name":"Alcântara","first_name":"André","full_name":"Alcântara, André"},{"full_name":"Khan, Mamoona","last_name":"Khan","first_name":"Mamoona"},{"last_name":"Bindics","first_name":"Janos","full_name":"Bindics, Janos"},{"full_name":"Trujillo, Marco","first_name":"Marco","last_name":"Trujillo"},{"full_name":"Djamei, Armin","last_name":"Djamei","first_name":"Armin"}],"file":[{"relation":"main_file","creator":"dernst","access_level":"open_access","date_created":"2024-04-09T10:24:43Z","content_type":"application/pdf","file_size":2616563,"checksum":"ab8428291a0c14607c4ea5656c029cff","success":1,"date_updated":"2024-04-09T10:24:43Z","file_name":"2021_PlosPathogens_Navarrete.pdf","file_id":"15305"}],"doi":"10.1371/journal.ppat.1009641","publisher":"Public Library of Science","quality_controlled":"1","_id":"15276","date_published":"2021-06-24T00:00:00Z","article_number":"e1009641","day":"24","keyword":["Virology","Genetics","Molecular Biology","Immunology","Microbiology","Parasitology"],"department":[{"_id":"JiFr"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa":1,"title":"The Pleiades are a cluster of fungal effectors that inhibit host defenses","article_processing_charge":"Yes","publication_identifier":{"issn":["1553-7374"]},"tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"}},{"month":"01","issue":"2","volume":49,"file_date_updated":"2024-04-09T10:14:39Z","publication_status":"published","year":"2021","page":"1133-1151","pmid":1,"author":[{"last_name":"Fuchs","first_name":"Armin","full_name":"Fuchs, Armin"},{"full_name":"Riegler, Stefan","last_name":"Riegler","first_name":"Stefan"},{"full_name":"Ayatollahi, Zahra","first_name":"Zahra","last_name":"Ayatollahi"},{"full_name":"Cavallari, Nicola","id":"457160E6-F248-11E8-B48F-1D18A9856A87","first_name":"Nicola","last_name":"Cavallari"},{"full_name":"Giono, Luciana E","first_name":"Luciana E","last_name":"Giono"},{"full_name":"Nimeth, Barbara A","last_name":"Nimeth","first_name":"Barbara A"},{"first_name":"Krishna V","last_name":"Mutanwad","full_name":"Mutanwad, Krishna V"},{"full_name":"Schweighofer, Alois","last_name":"Schweighofer","first_name":"Alois"},{"full_name":"Lucyshyn, Doris","last_name":"Lucyshyn","first_name":"Doris"},{"full_name":"Barta, Andrea","last_name":"Barta","first_name":"Andrea"},{"full_name":"Petrillo, Ezequiel","last_name":"Petrillo","first_name":"Ezequiel"},{"full_name":"Kalyna, Maria","last_name":"Kalyna","first_name":"Maria"}],"date_updated":"2024-04-09T10:16:40Z","ddc":["570"],"intvolume":" 49","article_type":"original","citation":{"chicago":"Fuchs, Armin, Stefan Riegler, Zahra Ayatollahi, Nicola Cavallari, Luciana E Giono, Barbara A Nimeth, Krishna V Mutanwad, et al. “Targeting Alternative Splicing by RNAi: From the Differential Impact on Splice Variants to Triggering Artificial Pre-MRNA Splicing.” Nucleic Acids Research. Oxford University Press, 2021. https://doi.org/10.1093/nar/gkaa1260.","short":"A. Fuchs, S. Riegler, Z. Ayatollahi, N. Cavallari, L.E. Giono, B.A. Nimeth, K.V. Mutanwad, A. Schweighofer, D. Lucyshyn, A. Barta, E. Petrillo, M. Kalyna, Nucleic Acids Research 49 (2021) 1133–1151.","mla":"Fuchs, Armin, et al. “Targeting Alternative Splicing by RNAi: From the Differential Impact on Splice Variants to Triggering Artificial Pre-MRNA Splicing.” Nucleic Acids Research, vol. 49, no. 2, Oxford University Press, 2021, pp. 1133–51, doi:10.1093/nar/gkaa1260.","ieee":"A. Fuchs et al., “Targeting alternative splicing by RNAi: From the differential impact on splice variants to triggering artificial pre-mRNA splicing,” Nucleic Acids Research, vol. 49, no. 2. Oxford University Press, pp. 1133–1151, 2021.","ista":"Fuchs A, Riegler S, Ayatollahi Z, Cavallari N, Giono LE, Nimeth BA, Mutanwad KV, Schweighofer A, Lucyshyn D, Barta A, Petrillo E, Kalyna M. 2021. Targeting alternative splicing by RNAi: From the differential impact on splice variants to triggering artificial pre-mRNA splicing. Nucleic Acids Research. 49(2), 1133–1151.","ama":"Fuchs A, Riegler S, Ayatollahi Z, et al. Targeting alternative splicing by RNAi: From the differential impact on splice variants to triggering artificial pre-mRNA splicing. Nucleic Acids Research. 2021;49(2):1133-1151. doi:10.1093/nar/gkaa1260","apa":"Fuchs, A., Riegler, S., Ayatollahi, Z., Cavallari, N., Giono, L. E., Nimeth, B. A., … Kalyna, M. (2021). Targeting alternative splicing by RNAi: From the differential impact on splice variants to triggering artificial pre-mRNA splicing. Nucleic Acids Research. Oxford University Press. https://doi.org/10.1093/nar/gkaa1260"},"language":[{"iso":"eng"}],"abstract":[{"lang":"eng","text":"Alternative splicing generates multiple transcript and protein isoforms from a single gene and controls transcript intracellular localization and stability by coupling to mRNA export and nonsense-mediated mRNA decay (NMD). RNA interference (RNAi) is a potent mechanism to modulate gene expression. However, its interactions with alternative splicing are poorly understood. We used artificial microRNAs (amiRNAs, also termed shRNAmiR) to knockdown all splice variants of selected target genes in Arabidopsis thaliana. We found that splice variants, which vary by their protein-coding capacity, subcellular localization and sensitivity to NMD, are affected differentially by an amiRNA, although all of them contain the target site. Particular transcript isoforms escape amiRNA-mediated degradation due to their nuclear localization. The nuclear and NMD-sensitive isoforms mask RNAi action in alternatively spliced genes. Interestingly, Arabidopsis SPL genes, which undergo alternative splicing and are targets of miR156, are regulated in the same manner. Moreover, similar results were obtained in mammalian cells using siRNAs, indicating cross-kingdom conservation of these interactions among RNAi and splicing isoforms. Furthermore, we report that amiRNA can trigger artificial alternative splicing, thus expanding the RNAi functional repertoire. Our findings unveil novel interactions between different post-transcriptional processes in defining transcript fates and regulating gene expression."}],"status":"public","external_id":{"pmid":["33406240"]},"has_accepted_license":"1","oa_version":"Published Version","date_created":"2024-04-03T08:02:09Z","publication":"Nucleic Acids Research","type":"journal_article","department":[{"_id":"EvBe"}],"keyword":["Genetics"],"day":"25","oa":1,"title":"Targeting alternative splicing by RNAi: From the differential impact on splice variants to triggering artificial pre-mRNA splicing","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_identifier":{"eissn":["1362-4962"],"issn":["0305-1048"]},"tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"article_processing_charge":"No","publisher":"Oxford University Press","file":[{"creator":"dernst","relation":"main_file","access_level":"open_access","date_created":"2024-04-09T10:14:39Z","content_type":"application/pdf","file_size":6539791,"checksum":"d3c90660759a5d34ad43ba1def130462","success":1,"file_name":"2021_NucleicAcidsRes_Fuchs.pdf","file_id":"15304","date_updated":"2024-04-09T10:14:39Z"}],"doi":"10.1093/nar/gkaa1260","quality_controlled":"1","_id":"15277","date_published":"2021-01-25T00:00:00Z"},{"publication_identifier":{"issn":["2073-4409"]},"tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"article_processing_charge":"Yes","oa":1,"title":"Antibiotics treatment modulates microglia–synapses interaction","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","department":[{"_id":"GaNo"}],"day":"04","keyword":["General Medicine"],"article_number":"2648","date_published":"2021-10-04T00:00:00Z","_id":"15278","quality_controlled":"1","publisher":"MDPI","file":[{"file_size":2196672,"checksum":"1a3b251ce82e2b9474b852d2abe5bb03","success":1,"file_name":"2021_Cells_Cordella.pdf","file_id":"15303","date_updated":"2024-04-09T08:51:22Z","creator":"dernst","relation":"main_file","access_level":"open_access","date_created":"2024-04-09T08:51:22Z","content_type":"application/pdf"}],"doi":"10.3390/cells10102648","author":[{"first_name":"Federica","last_name":"Cordella","full_name":"Cordella, Federica"},{"first_name":"Caterina","last_name":"Sanchini","full_name":"Sanchini, Caterina"},{"full_name":"Rosito, Maria","last_name":"Rosito","first_name":"Maria"},{"full_name":"Ferrucci, Laura","last_name":"Ferrucci","first_name":"Laura"},{"first_name":"Natalia","last_name":"Pediconi","full_name":"Pediconi, Natalia"},{"full_name":"Cortese, Barbara","last_name":"Cortese","first_name":"Barbara"},{"full_name":"Guerrieri, Francesca","last_name":"Guerrieri","first_name":"Francesca"},{"full_name":"Pascucci, Giuseppe Rubens","last_name":"Pascucci","first_name":"Giuseppe Rubens"},{"full_name":"Antonangeli, Fabrizio","first_name":"Fabrizio","last_name":"Antonangeli"},{"first_name":"Giovanna","last_name":"Peruzzi","full_name":"Peruzzi, Giovanna"},{"full_name":"Giubettini, Maria","last_name":"Giubettini","first_name":"Maria"},{"full_name":"Basilico, Bernadette","id":"36035796-5ACA-11E9-A75E-7AF2E5697425","orcid":"0000-0003-1843-3173","first_name":"Bernadette","last_name":"Basilico"},{"full_name":"Pagani, Francesca","first_name":"Francesca","last_name":"Pagani"},{"full_name":"Grimaldi, Alfonso","first_name":"Alfonso","last_name":"Grimaldi"},{"first_name":"Giuseppina","last_name":"D’Alessandro","full_name":"D’Alessandro, Giuseppina"},{"first_name":"Cristina","last_name":"Limatola","full_name":"Limatola, Cristina"},{"last_name":"Ragozzino","first_name":"Davide","full_name":"Ragozzino, Davide"},{"full_name":"Di Angelantonio, Silvia","last_name":"Di Angelantonio","first_name":"Silvia"}],"pmid":1,"publication_status":"published","file_date_updated":"2024-04-09T08:51:22Z","year":"2021","month":"10","issue":"10","volume":10,"abstract":[{"text":"‘Dysbiosis’ of the adult gut microbiota, in response to challenges such as infection, altered diet, stress, and antibiotics treatment has been recently linked to pathological alteration of brain function and behavior. Moreover, gut microbiota composition constantly controls microglia maturation, as revealed by morphological observations and gene expression analysis. However, it is unclear whether microglia functional properties and crosstalk with neurons, known to shape and modulate synaptic development and function, are influenced by the gut microbiota. Here, we investigated how antibiotic-mediated alteration of the gut microbiota influences microglial and neuronal functions in adult mice hippocampus. Hippocampal microglia from adult mice treated with oral antibiotics exhibited increased microglia density, altered basal patrolling activity, and impaired process rearrangement in response to damage. Patch clamp recordings at CA3-CA1 synapses revealed that antibiotics treatment alters neuronal functions, reducing spontaneous postsynaptic glutamatergic currents and decreasing synaptic connectivity, without reducing dendritic spines density. Antibiotics treatment was unable to modulate synaptic function in CX3CR1-deficient mice, pointing to an involvement of microglia–neuron crosstalk through the CX3CL1/CX3CR1 axis in the effect of dysbiosis on neuronal functions. Together, our findings show that antibiotic alteration of gut microbiota impairs synaptic efficacy, suggesting that CX3CL1/CX3CR1 signaling supporting microglia is a major player in in the gut–brain axis, and in particular in the gut microbiota-to-neuron communication pathway.","lang":"eng"}],"external_id":{"pmid":["34685628"]},"status":"public","has_accepted_license":"1","oa_version":"Published Version","date_created":"2024-04-03T08:02:52Z","publication":"Cells","type":"journal_article","article_type":"original","citation":{"chicago":"Cordella, Federica, Caterina Sanchini, Maria Rosito, Laura Ferrucci, Natalia Pediconi, Barbara Cortese, Francesca Guerrieri, et al. “Antibiotics Treatment Modulates Microglia–Synapses Interaction.” Cells. MDPI, 2021. https://doi.org/10.3390/cells10102648.","ista":"Cordella F, Sanchini C, Rosito M, Ferrucci L, Pediconi N, Cortese B, Guerrieri F, Pascucci GR, Antonangeli F, Peruzzi G, Giubettini M, Basilico B, Pagani F, Grimaldi A, D’Alessandro G, Limatola C, Ragozzino D, Di Angelantonio S. 2021. Antibiotics treatment modulates microglia–synapses interaction. Cells. 10(10), 2648.","ama":"Cordella F, Sanchini C, Rosito M, et al. Antibiotics treatment modulates microglia–synapses interaction. Cells. 2021;10(10). doi:10.3390/cells10102648","ieee":"F. Cordella et al., “Antibiotics treatment modulates microglia–synapses interaction,” Cells, vol. 10, no. 10. MDPI, 2021.","apa":"Cordella, F., Sanchini, C., Rosito, M., Ferrucci, L., Pediconi, N., Cortese, B., … Di Angelantonio, S. (2021). Antibiotics treatment modulates microglia–synapses interaction. Cells. MDPI. https://doi.org/10.3390/cells10102648","short":"F. Cordella, C. Sanchini, M. Rosito, L. Ferrucci, N. Pediconi, B. Cortese, F. Guerrieri, G.R. Pascucci, F. Antonangeli, G. Peruzzi, M. Giubettini, B. Basilico, F. Pagani, A. Grimaldi, G. D’Alessandro, C. Limatola, D. Ragozzino, S. Di Angelantonio, Cells 10 (2021).","mla":"Cordella, Federica, et al. “Antibiotics Treatment Modulates Microglia–Synapses Interaction.” Cells, vol. 10, no. 10, 2648, MDPI, 2021, doi:10.3390/cells10102648."},"language":[{"iso":"eng"}],"date_updated":"2024-04-09T08:53:23Z","ddc":["610"],"intvolume":" 10"},{"article_processing_charge":"No","page":"3024-3026","publication_identifier":{"eissn":["1435-8115"],"issn":["1431-9276"]},"author":[{"full_name":"Nicolas, William","last_name":"Nicolas","first_name":"William"},{"first_name":"Florian","orcid":"0000-0001-7149-769X","last_name":"Fäßler","id":"404F5528-F248-11E8-B48F-1D18A9856A87","full_name":"Fäßler, Florian"},{"first_name":"Elliot","last_name":"Meyerowitz","full_name":"Meyerowitz, Elliot"},{"last_name":"Jensen","first_name":"Grant","full_name":"Jensen, Grant"}],"volume":27,"day":"01","keyword":["Instrumentation"],"issue":"S1","month":"08","department":[{"_id":"FlSc"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2021","title":"Peaking into the plant cell wall using cryo-FIB milling and electron cryo-tomography","publication_status":"published","_id":"15283","date_published":"2021-08-01T00:00:00Z","quality_controlled":"1","language":[{"iso":"eng"}],"article_type":"original","citation":{"chicago":"Nicolas, William, Florian Fäßler, Elliot Meyerowitz, and Grant Jensen. “Peaking into the Plant Cell Wall Using Cryo-FIB Milling and Electron Cryo-Tomography.” Microscopy and Microanalysis. Oxford University Press, 2021. https://doi.org/10.1017/s1431927621010503.","ista":"Nicolas W, Fäßler F, Meyerowitz E, Jensen G. 2021. Peaking into the plant cell wall using cryo-FIB milling and electron cryo-tomography. Microscopy and Microanalysis. 27(S1), 3024–3026.","ama":"Nicolas W, Fäßler F, Meyerowitz E, Jensen G. Peaking into the plant cell wall using cryo-FIB milling and electron cryo-tomography. Microscopy and Microanalysis. 2021;27(S1):3024-3026. doi:10.1017/s1431927621010503","ieee":"W. Nicolas, F. Fäßler, E. Meyerowitz, and G. Jensen, “Peaking into the plant cell wall using cryo-FIB milling and electron cryo-tomography,” Microscopy and Microanalysis, vol. 27, no. S1. Oxford University Press, pp. 3024–3026, 2021.","apa":"Nicolas, W., Fäßler, F., Meyerowitz, E., & Jensen, G. (2021). Peaking into the plant cell wall using cryo-FIB milling and electron cryo-tomography. Microscopy and Microanalysis. Oxford University Press. https://doi.org/10.1017/s1431927621010503","short":"W. Nicolas, F. Fäßler, E. Meyerowitz, G. Jensen, Microscopy and Microanalysis 27 (2021) 3024–3026.","mla":"Nicolas, William, et al. “Peaking into the Plant Cell Wall Using Cryo-FIB Milling and Electron Cryo-Tomography.” Microscopy and Microanalysis, vol. 27, no. S1, Oxford University Press, 2021, pp. 3024–26, doi:10.1017/s1431927621010503."},"type":"journal_article","oa_version":"None","date_created":"2024-04-03T08:57:23Z","publication":"Microscopy and Microanalysis","status":"public","doi":"10.1017/s1431927621010503","publisher":"Oxford University Press","intvolume":" 27","date_updated":"2024-04-09T07:55:56Z"},{"article_processing_charge":"No","author":[{"full_name":"Chatterjee, Krishnendu","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4561-241X","first_name":"Krishnendu","last_name":"Chatterjee"},{"full_name":"Goharshady, Ehsan Kafshdar","last_name":"Goharshady","first_name":"Ehsan Kafshdar"},{"full_name":"Novotný, Petr","id":"3CC3B868-F248-11E8-B48F-1D18A9856A87","last_name":"Novotný","first_name":"Petr"},{"first_name":"Dorde","orcid":"0000-0002-4681-1699","last_name":"Zikelic","id":"294AA7A6-F248-11E8-B48F-1D18A9856A87","full_name":"Zikelic, Dorde"}],"day":"01","related_material":{"record":[{"relation":"used_in_publication","id":"9644","status":"public"}]},"month":"06","department":[{"_id":"KrCh"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2021","title":"RevTerm","oa":1,"date_published":"2021-06-01T00:00:00Z","_id":"15284","citation":{"short":"K. Chatterjee, E.K. Goharshady, P. Novotný, D. Zikelic, (2021).","mla":"Chatterjee, Krishnendu, et al. RevTerm. Association for Computing Machinery, 2021, doi:10.1145/3410304.","ista":"Chatterjee K, Goharshady EK, Novotný P, Zikelic D. 2021. RevTerm, Association for Computing Machinery, 10.1145/3410304.","ama":"Chatterjee K, Goharshady EK, Novotný P, Zikelic D. RevTerm. 2021. doi:10.1145/3410304","ieee":"K. Chatterjee, E. K. Goharshady, P. Novotný, and D. Zikelic, “RevTerm.” Association for Computing Machinery, 2021.","apa":"Chatterjee, K., Goharshady, E. K., Novotný, P., & Zikelic, D. (2021). RevTerm. Association for Computing Machinery. https://doi.org/10.1145/3410304","chicago":"Chatterjee, Krishnendu, Ehsan Kafshdar Goharshady, Petr Novotný, and Dorde Zikelic. “RevTerm.” Association for Computing Machinery, 2021. https://doi.org/10.1145/3410304."},"main_file_link":[{"url":"https://doi.org/10.1145/3410304","open_access":"1"}],"type":"research_data_reference","corr_author":"1","date_created":"2024-04-03T09:00:42Z","oa_version":"Published Version","has_accepted_license":"1","status":"public","abstract":[{"lang":"eng","text":"RevTerm is a static analysis tool for proving non-termination of integer C programs (possibly with non-determinism). RevTerm is an implementation of our method for non-termination proving presented in the paper “Proving Non-termination by Program Reversal”.\r\n\r\n"}],"doi":"10.1145/3410304","publisher":"Association for Computing Machinery","ddc":["000"],"date_updated":"2025-04-15T06:25:30Z"},{"intvolume":" 2","date_updated":"2024-04-09T06:51:50Z","ddc":["610"],"article_type":"review","citation":{"chicago":"Rubel, Paul, Jocelyne Fayn, Peter W. Macfarlane, Danilo Pani, Alois Schlögl, and Alpo Värri. “The History and Challenges of SCP-ECG: The Standard Communication Protocol for Computer-Assisted Electrocardiography.” Hearts. MDPI, 2021. https://doi.org/10.3390/hearts2030031.","apa":"Rubel, P., Fayn, J., Macfarlane, P. W., Pani, D., Schlögl, A., & Värri, A. (2021). The history and challenges of SCP-ECG: The standard communication protocol for computer-assisted electrocardiography. Hearts. MDPI. https://doi.org/10.3390/hearts2030031","ama":"Rubel P, Fayn J, Macfarlane PW, Pani D, Schlögl A, Värri A. The history and challenges of SCP-ECG: The standard communication protocol for computer-assisted electrocardiography. Hearts. 2021;2(3):384-409. doi:10.3390/hearts2030031","ieee":"P. Rubel, J. Fayn, P. W. Macfarlane, D. Pani, A. Schlögl, and A. Värri, “The history and challenges of SCP-ECG: The standard communication protocol for computer-assisted electrocardiography,” Hearts, vol. 2, no. 3. MDPI, pp. 384–409, 2021.","ista":"Rubel P, Fayn J, Macfarlane PW, Pani D, Schlögl A, Värri A. 2021. The history and challenges of SCP-ECG: The standard communication protocol for computer-assisted electrocardiography. Hearts. 2(3), 384–409.","mla":"Rubel, Paul, et al. “The History and Challenges of SCP-ECG: The Standard Communication Protocol for Computer-Assisted Electrocardiography.” Hearts, vol. 2, no. 3, MDPI, 2021, pp. 384–409, doi:10.3390/hearts2030031.","short":"P. Rubel, J. Fayn, P.W. Macfarlane, D. Pani, A. Schlögl, A. Värri, Hearts 2 (2021) 384–409."},"language":[{"iso":"eng"}],"date_created":"2024-04-03T09:03:31Z","oa_version":"Published Version","publication":"Hearts","type":"journal_article","abstract":[{"text":"Ever since the first publication of the standard communication protocol for computer-assisted electrocardiography (SCP-ECG), prENV 1064, in 1993, by the European Committee for Standardization (CEN), SCP-ECG has become a leading example in health informatics, enabling open, secure, and well-documented digital data exchange at a low cost, for quick and efficient cardiovascular disease detection and management. Based on the experiences gained, since the 1970s, in computerized electrocardiology, and on the results achieved by the pioneering, international cooperative research on common standards for quantitative electrocardiography (CSE), SCP-ECG was designed, from the beginning, to empower personalized medicine, thanks to serial ECG analysis. The fundamental concept behind SCP-ECG is to convey the necessary information for ECG re-analysis, serial comparison, and interpretation, and to structure the ECG data and metadata in sections that are mostly optional in order to fit all use cases. SCP-ECG is open to the storage of the ECG signal and ECG measurement data, whatever the ECG recording modality or computation method, and can store the over-reading trails and ECG annotations, as well as any computerized or medical interpretation reports. Only the encoding syntax and the semantics of the ECG descriptors and of the diagnosis codes are standardized. We present all of the landmarks in the development and publication of SCP-ECG, from the early 1990s to the 2009 International Organization for Standardization (ISO) SCP-ECG standards, including the latest version published by CEN in 2020, which now encompasses rest and stress ECGs, Holter recordings, and protocol-based trials.","lang":"eng"}],"has_accepted_license":"1","status":"public","issue":"3","volume":2,"month":"08","year":"2021","file_date_updated":"2024-04-09T06:49:47Z","publication_status":"published","page":"384-409","author":[{"full_name":"Rubel, Paul","first_name":"Paul","last_name":"Rubel"},{"first_name":"Jocelyne","last_name":"Fayn","full_name":"Fayn, Jocelyne"},{"full_name":"Macfarlane, Peter W.","last_name":"Macfarlane","first_name":"Peter W."},{"full_name":"Pani, Danilo","first_name":"Danilo","last_name":"Pani"},{"last_name":"Schlögl","first_name":"Alois","orcid":"0000-0002-5621-8100","id":"45BF87EE-F248-11E8-B48F-1D18A9856A87","full_name":"Schlögl, Alois"},{"first_name":"Alpo","last_name":"Värri","full_name":"Värri, Alpo"}],"file":[{"file_id":"15302","file_name":"2021_Hearts_Rubel.pdf","date_updated":"2024-04-09T06:49:47Z","checksum":"f67142b1e1e8ca5cd7a6a6798f46375e","success":1,"file_size":3539897,"content_type":"application/pdf","date_created":"2024-04-09T06:49:47Z","access_level":"open_access","creator":"dernst","relation":"main_file"}],"doi":"10.3390/hearts2030031","acknowledgement":"This research received no external funding. The authors thank the large number of researchers, engineers, cardiologists, and clinicians from academia, industry, and normalization organizations who contributed to the development and testing of the SCP-ECG standards.","publisher":"MDPI","date_published":"2021-08-24T00:00:00Z","_id":"15285","quality_controlled":"1","keyword":["General Medicine"],"day":"24","department":[{"_id":"ScienComp"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa":1,"title":"The history and challenges of SCP-ECG: The standard communication protocol for computer-assisted electrocardiography","article_processing_charge":"Yes","publication_identifier":{"issn":["2673-3846"]},"tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"}},{"extern":"1","doi":"10.7554/elife.61769","publisher":"eLife Sciences Publications","_id":"19472","date_published":"2021-04-19T00:00:00Z","quality_controlled":"1","article_number":"61769","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"DCC regulates astroglial development essential for telencephalic morphogenesis and corpus callosum formation","oa":1,"day":"19","article_processing_charge":"Yes","tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"publication_identifier":{"eissn":["2050-084X"]},"intvolume":" 10","OA_place":"publisher","date_updated":"2025-07-10T11:51:41Z","OA_type":"gold","main_file_link":[{"url":"https://doi.org/10.7554/eLife.61769","open_access":"1"}],"type":"journal_article","scopus_import":"1","oa_version":"Published Version","publication":"eLife","date_created":"2025-04-03T12:29:29Z","external_id":{"pmid":["33871356"]},"status":"public","has_accepted_license":"1","abstract":[{"text":"The forebrain hemispheres are predominantly separated during embryogenesis by the interhemispheric fissure (IHF). Radial astroglia remodel the IHF to form a continuous substrate between the hemispheres for midline crossing of the corpus callosum (CC) and hippocampal commissure (HC). Deleted in colorectal carcinoma (DCC) and netrin 1 (NTN1) are molecules that have an evolutionarily conserved function in commissural axon guidance. The CC and HC are absent in Dcc and Ntn1 knockout mice, while other commissures are only partially affected, suggesting an additional aetiology in forebrain commissure formation. Here, we find that these molecules play a critical role in regulating astroglial development and IHF remodelling during CC and HC formation. Human subjects with DCC mutations display disrupted IHF remodelling associated with CC and HC malformations. Thus, axon guidance molecules such as DCC and NTN1 first regulate the formation of a midline substrate for dorsal commissures prior to their role in regulating axonal growth and guidance across it.","lang":"eng"}],"language":[{"iso":"eng"}],"article_type":"original","citation":{"chicago":"Morcom, Laura, Ilan Gobius, Ashley PL Marsh, Rodrigo Suárez, Jonathan WC Lim, Caitlin Bridges, Yunan Ye, et al. “DCC Regulates Astroglial Development Essential for Telencephalic Morphogenesis and Corpus Callosum Formation.” ELife. eLife Sciences Publications, 2021. https://doi.org/10.7554/elife.61769.","apa":"Morcom, L., Gobius, I., Marsh, A. P., Suárez, R., Lim, J. W., Bridges, C., … Richards, L. J. (2021). DCC regulates astroglial development essential for telencephalic morphogenesis and corpus callosum formation. ELife. eLife Sciences Publications. https://doi.org/10.7554/elife.61769","ieee":"L. Morcom et al., “DCC regulates astroglial development essential for telencephalic morphogenesis and corpus callosum formation,” eLife, vol. 10. eLife Sciences Publications, 2021.","ama":"Morcom L, Gobius I, Marsh AP, et al. DCC regulates astroglial development essential for telencephalic morphogenesis and corpus callosum formation. eLife. 2021;10. doi:10.7554/elife.61769","ista":"Morcom L, Gobius I, Marsh AP, Suárez R, Lim JW, Bridges C, Ye Y, Fenlon LR, Zagar Y, Douglass AM, Donahoo A-LS, Fothergill T, Shaikh S, Kozulin P, Edwards TJ, Cooper HM, Sherr EH, Chédotal A, Leventer RJ, Lockhart PJ, Richards LJ. 2021. DCC regulates astroglial development essential for telencephalic morphogenesis and corpus callosum formation. eLife. 10, 61769.","mla":"Morcom, Laura, et al. “DCC Regulates Astroglial Development Essential for Telencephalic Morphogenesis and Corpus Callosum Formation.” ELife, vol. 10, 61769, eLife Sciences Publications, 2021, doi:10.7554/elife.61769.","short":"L. Morcom, I. Gobius, A.P. Marsh, R. Suárez, J.W. Lim, C. Bridges, Y. Ye, L.R. Fenlon, Y. Zagar, A.M. Douglass, A.-L.S. Donahoo, T. Fothergill, S. Shaikh, P. Kozulin, T.J. Edwards, H.M. Cooper, E.H. Sherr, A. Chédotal, R.J. Leventer, P.J. Lockhart, L.J. Richards, ELife 10 (2021)."},"DOAJ_listed":"1","year":"2021","publication_status":"published","volume":10,"month":"04","author":[{"full_name":"Morcom, Laura","first_name":"Laura","last_name":"Morcom"},{"last_name":"Gobius","first_name":"Ilan","full_name":"Gobius, Ilan"},{"full_name":"Marsh, Ashley PL","last_name":"Marsh","first_name":"Ashley PL"},{"last_name":"Suárez","first_name":"Rodrigo","full_name":"Suárez, Rodrigo"},{"last_name":"Lim","first_name":"Jonathan WC","full_name":"Lim, Jonathan WC"},{"last_name":"Bridges","first_name":"Caitlin","full_name":"Bridges, Caitlin"},{"full_name":"Ye, Yunan","first_name":"Yunan","last_name":"Ye"},{"full_name":"Fenlon, Laura R","first_name":"Laura R","last_name":"Fenlon"},{"full_name":"Zagar, Yvrick","last_name":"Zagar","first_name":"Yvrick"},{"last_name":"Douglass","orcid":"0000-0001-5398-6473","first_name":"Amelia May Barnett","full_name":"Douglass, Amelia May Barnett","id":"de5f6fda-80fb-11ef-996f-a8c4ecd8e289"},{"full_name":"Donahoo, Amber-Lee S","last_name":"Donahoo","first_name":"Amber-Lee S"},{"full_name":"Fothergill, Thomas","last_name":"Fothergill","first_name":"Thomas"},{"full_name":"Shaikh, Samreen","last_name":"Shaikh","first_name":"Samreen"},{"last_name":"Kozulin","first_name":"Peter","full_name":"Kozulin, Peter"},{"full_name":"Edwards, Timothy J","first_name":"Timothy J","last_name":"Edwards"},{"last_name":"Cooper","first_name":"Helen M","full_name":"Cooper, Helen M"},{"full_name":"Sherr, Elliott H","last_name":"Sherr","first_name":"Elliott H"},{"first_name":"Alain","last_name":"Chédotal","full_name":"Chédotal, Alain"},{"first_name":"Richard J","last_name":"Leventer","full_name":"Leventer, Richard J"},{"last_name":"Lockhart","first_name":"Paul J","full_name":"Lockhart, Paul J"},{"first_name":"Linda J","last_name":"Richards","full_name":"Richards, Linda J"}],"pmid":1},{"article_number":"1","quality_controlled":"1","_id":"19489","date_published":"2021-11-15T00:00:00Z","publisher":"Springer Nature","doi":"10.1007/s40993-021-00295-5","extern":"1","tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"publication_identifier":{"issn":["2522-0160"],"eissn":["2363-9555"]},"article_processing_charge":"No","day":"15","title":"A density of ramified primes","oa":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","language":[{"iso":"eng"}],"citation":{"mla":"Chan, Stephanie, et al. “A Density of Ramified Primes.” Research in Number Theory, vol. 8, 1, Springer Nature, 2021, doi:10.1007/s40993-021-00295-5.","short":"S. Chan, C. McMeekin, D. Milovic, Research in Number Theory 8 (2021).","apa":"Chan, S., McMeekin, C., & Milovic, D. (2021). A density of ramified primes. Research in Number Theory. Springer Nature. https://doi.org/10.1007/s40993-021-00295-5","ama":"Chan S, McMeekin C, Milovic D. A density of ramified primes. Research in Number Theory. 2021;8. doi:10.1007/s40993-021-00295-5","ista":"Chan S, McMeekin C, Milovic D. 2021. A density of ramified primes. Research in Number Theory. 8, 1.","ieee":"S. Chan, C. McMeekin, and D. Milovic, “A density of ramified primes,” Research in Number Theory, vol. 8. Springer Nature, 2021.","chicago":"Chan, Stephanie, Christine McMeekin, and Djordjo Milovic. “A Density of Ramified Primes.” Research in Number Theory. Springer Nature, 2021. https://doi.org/10.1007/s40993-021-00295-5."},"article_type":"original","has_accepted_license":"1","status":"public","external_id":{"arxiv":["2005.10188"]},"abstract":[{"text":"Let K be a cyclic number field of odd degree over \r\n𝑄 with odd narrow class number, such that 2 is inert in 𝐾/𝑄. We define a family of number fields {𝐾(𝑝)}𝑝, depending on K and indexed by the rational primes p that split completely in 𝐾/𝑄, in which p is always ramified of degree 2. Conditional on a standard conjecture on short character sums, the density of such rational primes p that exhibit one of two possible ramified factorizations in 𝐾(𝑝)/𝑄 is strictly between 0 and 1 and is given explicitly as a formula in terms of the degree of the extension 𝐾/𝑄. Our results are unconditional in the cubic case. Our proof relies on a detailed study of the joint distribution of spins of prime ideals.","lang":"eng"}],"type":"journal_article","main_file_link":[{"url":"https://doi.org/10.1007/s40993-021-00295-5","open_access":"1"}],"scopus_import":"1","oa_version":"Published Version","publication":"Research in Number Theory","date_created":"2025-04-05T10:50:51Z","OA_type":"hybrid","arxiv":1,"ddc":["510"],"date_updated":"2025-07-10T11:51:46Z","intvolume":" 8","OA_place":"publisher","author":[{"last_name":"Chan","orcid":"0000-0001-8467-4106","first_name":"Yik Tung","full_name":"Chan, Yik Tung","id":"c4c0afc8-9262-11ed-9231-d8b0bc743af1"},{"full_name":"McMeekin, Christine","last_name":"McMeekin","first_name":"Christine"},{"first_name":"Djordjo","last_name":"Milovic","full_name":"Milovic, Djordjo"}],"month":"11","volume":8,"publication_status":"published","year":"2021"},{"article_processing_charge":"No","publication_identifier":{"eissn":["1432-1823"],"issn":["0025-5874"]},"day":"17","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa":1,"title":"Kuroda’s formula and arithmetic statistics","quality_controlled":"1","_id":"19492","date_published":"2021-08-17T00:00:00Z","doi":"10.1007/s00209-021-02823-6","publisher":"Springer Nature","extern":"1","page":"1509-1527","author":[{"id":"c4c0afc8-9262-11ed-9231-d8b0bc743af1","full_name":"Chan, Yik Tung","last_name":"Chan","first_name":"Yik Tung","orcid":"0000-0001-8467-4106"},{"full_name":"Milovic, Djordjo","first_name":"Djordjo","last_name":"Milovic"}],"issue":"2","volume":300,"month":"08","year":"2021","publication_status":"published","article_type":"original","citation":{"chicago":"Chan, Stephanie, and Djordjo Milovic. “Kuroda’s Formula and Arithmetic Statistics.” Mathematische Zeitschrift. Springer Nature, 2021. https://doi.org/10.1007/s00209-021-02823-6.","mla":"Chan, Stephanie, and Djordjo Milovic. “Kuroda’s Formula and Arithmetic Statistics.” Mathematische Zeitschrift, vol. 300, no. 2, Springer Nature, 2021, pp. 1509–27, doi:10.1007/s00209-021-02823-6.","short":"S. Chan, D. Milovic, Mathematische Zeitschrift 300 (2021) 1509–1527.","apa":"Chan, S., & Milovic, D. (2021). Kuroda’s formula and arithmetic statistics. Mathematische Zeitschrift. Springer Nature. https://doi.org/10.1007/s00209-021-02823-6","ista":"Chan S, Milovic D. 2021. Kuroda’s formula and arithmetic statistics. Mathematische Zeitschrift. 300(2), 1509–1527.","ieee":"S. Chan and D. Milovic, “Kuroda’s formula and arithmetic statistics,” Mathematische Zeitschrift, vol. 300, no. 2. Springer Nature, pp. 1509–1527, 2021.","ama":"Chan S, Milovic D. Kuroda’s formula and arithmetic statistics. Mathematische Zeitschrift. 2021;300(2):1509-1527. doi:10.1007/s00209-021-02823-6"},"language":[{"iso":"eng"}],"publication":"Mathematische Zeitschrift","date_created":"2025-04-05T10:51:04Z","oa_version":"Preprint","scopus_import":"1","main_file_link":[{"url":"https://doi.org/10.48550/arXiv.1905.09745","open_access":"1"}],"type":"journal_article","abstract":[{"lang":"eng","text":"Kuroda’s formula relates the class number of a multiquadratic number field K to the class numbers of its quadratic subfields ki. A key component in this formula is the unit group index (math formular). We study how Q(K) behaves on average in certain natural families of totally real biquadratic fields K parametrized by prime numbers."}],"external_id":{"arxiv":["1905.09745"]},"status":"public","OA_type":"green","intvolume":" 300","OA_place":"repository","date_updated":"2025-07-10T11:51:48Z","arxiv":1},{"date_published":"2021-11-01T00:00:00Z","_id":"19909","quality_controlled":"1","doi":"10.1038/s41567-021-01334-9","publisher":"Springer Nature","extern":"1","article_processing_charge":"No","publication_identifier":{"issn":["1745-2473"],"eissn":["1745-2481"]},"day":"01","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"Phase behaviours of superionic water at planetary conditions","language":[{"iso":"eng"}],"article_type":"original","citation":{"chicago":"Cheng, Bingqing, Mandy Bethkenhagen, Chris J. Pickard, and Sebastien Hamel. “Phase Behaviours of Superionic Water at Planetary Conditions.” Nature Physics. Springer Nature, 2021. https://doi.org/10.1038/s41567-021-01334-9.","apa":"Cheng, B., Bethkenhagen, M., Pickard, C. J., & Hamel, S. (2021). Phase behaviours of superionic water at planetary conditions. Nature Physics. Springer Nature. https://doi.org/10.1038/s41567-021-01334-9","ama":"Cheng B, Bethkenhagen M, Pickard CJ, Hamel S. Phase behaviours of superionic water at planetary conditions. Nature Physics. 2021;17(11):1228-1232. doi:10.1038/s41567-021-01334-9","ieee":"B. Cheng, M. Bethkenhagen, C. J. Pickard, and S. Hamel, “Phase behaviours of superionic water at planetary conditions,” Nature Physics, vol. 17, no. 11. Springer Nature, pp. 1228–1232, 2021.","ista":"Cheng B, Bethkenhagen M, Pickard CJ, Hamel S. 2021. Phase behaviours of superionic water at planetary conditions. Nature Physics. 17(11), 1228–1232.","mla":"Cheng, Bingqing, et al. “Phase Behaviours of Superionic Water at Planetary Conditions.” Nature Physics, vol. 17, no. 11, Springer Nature, 2021, pp. 1228–32, doi:10.1038/s41567-021-01334-9.","short":"B. Cheng, M. Bethkenhagen, C.J. Pickard, S. Hamel, Nature Physics 17 (2021) 1228–1232."},"type":"journal_article","publication":"Nature Physics","scopus_import":"1","date_created":"2025-06-26T11:36:36Z","oa_version":"Preprint","status":"public","external_id":{"arxiv":["2103.09035"]},"abstract":[{"text":"Most water in the Universe may be superionic, and its thermodynamic and transport properties are crucial for planetary science but difficult to probe experimentally or theoretically. We use machine learning and free-energy methods to overcome the limitations of quantum mechanical simulations and characterize hydrogen diffusion, superionic transitions and phase behaviours of water at extreme conditions. We predict that close-packed superionic phases, which have a fraction of mixed stacking for finite systems, are stable over a wide temperature and pressure range, whereas a body-centred cubic superionic phase is only thermodynamically stable in a small window but is kinetically favoured. Our phase boundaries, which are consistent with existing—albeit scarce—experimental observations, help resolve the fractions of insulating ice, different superionic phases and liquid water inside ice giants.","lang":"eng"}],"OA_type":"green","intvolume":" 17","OA_place":"repository","arxiv":1,"date_updated":"2025-06-26T11:49:07Z","page":"1228-1232","author":[{"first_name":"Bingqing","orcid":"0000-0002-3584-9632","last_name":"Cheng","id":"cbe3cda4-d82c-11eb-8dc7-8ff94289fcc9","full_name":"Cheng, Bingqing"},{"full_name":"Bethkenhagen, Mandy","last_name":"Bethkenhagen","first_name":"Mandy"},{"full_name":"Pickard, Chris J.","last_name":"Pickard","first_name":"Chris J."},{"full_name":"Hamel, Sebastien","last_name":"Hamel","first_name":"Sebastien"}],"volume":17,"related_material":{"record":[{"status":"public","id":"9696","relation":"earlier_version"}]},"issue":"11","month":"11","year":"2021","publication_status":"published"},{"OA_type":"green","intvolume":" 379","OA_place":"repository","arxiv":1,"date_updated":"2025-11-10T15:11:29Z","language":[{"iso":"eng"}],"article_type":"original","citation":{"chicago":"Chen, Xujia, and Aleksey Zinger. “WDVV-Type Relations for Disk Gromov–Witten Invariants in Dimension 6.” Mathematische Annalen. Springer Nature, 2021. https://doi.org/10.1007/s00208-020-02130-1.","ista":"Chen X, Zinger A. 2021. WDVV-type relations for disk Gromov–Witten invariants in dimension 6. Mathematische Annalen. 379(3–4), 1231–1313.","ieee":"X. Chen and A. Zinger, “WDVV-type relations for disk Gromov–Witten invariants in dimension 6,” Mathematische Annalen, vol. 379, no. 3–4. Springer Nature, pp. 1231–1313, 2021.","ama":"Chen X, Zinger A. WDVV-type relations for disk Gromov–Witten invariants in dimension 6. Mathematische Annalen. 2021;379(3-4):1231-1313. doi:10.1007/s00208-020-02130-1","apa":"Chen, X., & Zinger, A. (2021). WDVV-type relations for disk Gromov–Witten invariants in dimension 6. Mathematische Annalen. Springer Nature. https://doi.org/10.1007/s00208-020-02130-1","short":"X. Chen, A. Zinger, Mathematische Annalen 379 (2021) 1231–1313.","mla":"Chen, Xujia, and Aleksey Zinger. “WDVV-Type Relations for Disk Gromov–Witten Invariants in Dimension 6.” Mathematische Annalen, vol. 379, no. 3–4, Springer Nature, 2021, pp. 1231–313, doi:10.1007/s00208-020-02130-1."},"main_file_link":[{"url":"https://doi.org/10.48550/arXiv.1904.04254","open_access":"1"}],"type":"journal_article","oa_version":"Preprint","scopus_import":"1","publication":"Mathematische Annalen","date_created":"2025-11-10T08:41:40Z","status":"public","external_id":{"arxiv":["1904.04254"]},"abstract":[{"lang":"eng","text":"The first author’s previous work established Solomon’s WDVV-type relations for Welschinger’s invariant curve counts in real symplectic fourfolds by lifting geometric relations over possibly unorientable morphisms. We apply her framework to obtain WDVV-style relations for the disk invariants of real symplectic sixfolds with some symmetry, in particular confirming Alcolado’s prediction for P^3 and extending it to other spaces. These relations reduce the computation of Welschinger’s invariants of many real symplectic sixfolds to invariants in small degrees and provide lower bounds for counts of real rational curves with positive-dimensional insertions in some cases. In the case of P^3, our lower bounds fit perfectly with Kollár’s vanishing results."}],"volume":379,"issue":"3-4","month":"01","year":"2021","publication_status":"published","page":"1231-1313","author":[{"id":"968ad14a-fd86-11ee-a420-ea29715511a3","full_name":"Chen, Xujia","first_name":"Xujia","last_name":"Chen"},{"full_name":"Zinger, Aleksey","last_name":"Zinger","first_name":"Aleksey"}],"doi":"10.1007/s00208-020-02130-1","publisher":"Springer Nature","extern":"1","quality_controlled":"1","_id":"20619","date_published":"2021-01-25T00:00:00Z","day":"25","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"WDVV-type relations for disk Gromov–Witten invariants in dimension 6","oa":1,"article_processing_charge":"No","publication_identifier":{"eissn":["1432-1807"],"issn":["0025-5831"]}},{"type":"journal_article","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.1809.08938"}],"publication":"Kyoto Journal of Mathematics","date_created":"2025-11-10T08:45:12Z","oa_version":"Preprint","external_id":{"arxiv":["1809.08938"]},"status":"public","abstract":[{"lang":"eng","text":"We first recall Solomon’s relations for Welschinger invariants counting real curves in real symplectic fourfolds and the Witten–Dijkgraaf–Verlinde–Verlinde (WDVV)-style relations for Welschinger invariants counting real curves in real symplectic sixfolds with some symmetry. We then explicitly demonstrate that, in some important cases (projective spaces with standard conjugations, real blowups of the projective plane, and two- and threefold products of the one-dimensional projective space with two involutions each), these relations provide complete recursions determining all Welschinger invariants from basic input. We include extensive tables of Welschinger invariants in low degrees obtained from these recursions with Mathematica. These invariants provide lower bounds for counts of real rational curves, including with curve insertions in smooth algebraic threefolds."}],"language":[{"iso":"eng"}],"citation":{"chicago":"Chen, Xujia, and Aleksey Zinger. “WDVV-Type Relations for Welschinger’s Invariants: Applications.” Kyoto Journal of Mathematics. Duke University Press, n.d. https://doi.org/10.1215/21562261-2021-0005.","mla":"Chen, Xujia, and Aleksey Zinger. “WDVV-Type Relations for Welschinger’s Invariants: Applications.” Kyoto Journal of Mathematics, vol. 61, no. 2, Duke University Press, pp. 339–76, doi:10.1215/21562261-2021-0005.","short":"X. Chen, A. Zinger, Kyoto Journal of Mathematics 61 (n.d.) 339–376.","apa":"Chen, X., & Zinger, A. (n.d.). WDVV-type relations for Welschinger’s invariants: Applications. Kyoto Journal of Mathematics. Duke University Press. https://doi.org/10.1215/21562261-2021-0005","ama":"Chen X, Zinger A. WDVV-type relations for Welschinger’s invariants: Applications. Kyoto Journal of Mathematics. 61(2):339-376. doi:10.1215/21562261-2021-0005","ieee":"X. Chen and A. Zinger, “WDVV-type relations for Welschinger’s invariants: Applications,” Kyoto Journal of Mathematics, vol. 61, no. 2. Duke University Press, pp. 339–376.","ista":"Chen X, Zinger A. WDVV-type relations for Welschinger’s invariants: Applications. Kyoto Journal of Mathematics. 61(2), 339–376."},"OA_place":"repository","intvolume":" 61","arxiv":1,"date_updated":"2025-11-10T15:13:58Z","OA_type":"green","author":[{"id":"968ad14a-fd86-11ee-a420-ea29715511a3","full_name":"Chen, Xujia","first_name":"Xujia","last_name":"Chen"},{"full_name":"Zinger, Aleksey","first_name":"Aleksey","last_name":"Zinger"}],"page":"339-376","year":"2021","publication_status":"submitted","volume":61,"issue":"2","month":"06","date_published":"2021-06-01T00:00:00Z","_id":"20622","quality_controlled":"1","extern":"1","doi":"10.1215/21562261-2021-0005","publisher":"Duke University Press","article_processing_charge":"No","publication_identifier":{"eissn":["2154-3321"]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"WDVV-type relations for Welschinger's invariants: Applications","oa":1,"day":"01"},{"citation":{"apa":"Willems, S., Toupalas, G., Reisenbauer, J., & Morandi, B. (2021). 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The specific examples being treated are two-phase Navier-Stokes flow with surface tension, modeling the evolution of two incompressible, viscous and immiscible fluids separated by a sharp interface, and multiphase mean curvature flow, which serves as an idealized model for the motion of grain boundaries in an annealing polycrystalline material. Our main results - obtained in joint works with Julian Fischer, Tim Laux and Theresa M. Simon - state that prior to the formation of geometric singularities due to topology changes, the weak solution concept of Abels (Interfaces Free Bound. 9, 2007) to two-phase Navier-Stokes flow with surface tension and the weak solution concept of Laux and Otto (Calc. Var. Partial Differential Equations 55, 2016) to multiphase mean curvature flow (for networks in R^2 or double bubbles in R^3) represents the unique solution to these interface evolution problems within the class of classical solutions, respectively. To the best of the author's knowledge, for interface evolution problems not admitting a geometric comparison principle the derivation of a weak-strong uniqueness principle represented an open problem, so that the works contained in the present thesis constitute the first positive results in this direction. The key ingredient of our approach consists of the introduction of a novel concept of relative entropies for a class of curvature driven interface evolution problems, for which the associated energy contains an interfacial contribution being proportional to the surface area of the evolving (network of) interface(s). The interfacial part of the relative entropy gives sufficient control on the interface error between a weak and a classical solution, and its time evolution can be computed, at least in principle, for any energy dissipating weak solution concept. A resulting stability estimate for the relative entropy essentially entails the above mentioned weak-strong uniqueness principles. The present thesis contains a detailed introduction to our relative entropy approach, which in particular highlights potential applications to other problems in curvature driven interface evolution not treated in this thesis.","lang":"eng"}],"corr_author":"1","type":"dissertation","oa_version":"Published Version","date_created":"2021-09-13T11:12:34Z","language":[{"iso":"eng"}],"ec_funded":1,"citation":{"apa":"Hensel, S. (2021). Curvature driven interface evolution: Uniqueness properties of weak solution concepts. Institute of Science and Technology Austria. https://doi.org/10.15479/at:ista:10007","ieee":"S. Hensel, “Curvature driven interface evolution: Uniqueness properties of weak solution concepts,” Institute of Science and Technology Austria, 2021.","ista":"Hensel S. 2021. Curvature driven interface evolution: Uniqueness properties of weak solution concepts. Institute of Science and Technology Austria.","ama":"Hensel S. Curvature driven interface evolution: Uniqueness properties of weak solution concepts. 2021. doi:10.15479/at:ista:10007","mla":"Hensel, Sebastian. Curvature Driven Interface Evolution: Uniqueness Properties of Weak Solution Concepts. Institute of Science and Technology Austria, 2021, doi:10.15479/at:ista:10007.","short":"S. Hensel, Curvature Driven Interface Evolution: Uniqueness Properties of Weak Solution Concepts, Institute of Science and Technology Austria, 2021.","chicago":"Hensel, Sebastian. “Curvature Driven Interface Evolution: Uniqueness Properties of Weak Solution Concepts.” Institute of Science and Technology Austria, 2021. https://doi.org/10.15479/at:ista:10007."},"file_date_updated":"2021-09-15T14:37:30Z","publication_status":"published","year":"2021","month":"09","related_material":{"record":[{"status":"public","id":"10012","relation":"part_of_dissertation"},{"relation":"part_of_dissertation","id":"10013","status":"public"},{"relation":"part_of_dissertation","status":"public","id":"7489"}]},"author":[{"id":"4D23B7DA-F248-11E8-B48F-1D18A9856A87","full_name":"Hensel, Sebastian","first_name":"Sebastian","orcid":"0000-0001-7252-8072","last_name":"Hensel"}],"alternative_title":["ISTA Thesis"],"page":"300"},{"ec_funded":1,"citation":{"chicago":"Hensel, Sebastian, and Tim Laux. “Weak-Strong Uniqueness for the Mean Curvature Flow of Double Bubbles.” ArXiv, n.d. https://doi.org/10.48550/arXiv.2108.01733.","short":"S. Hensel, T. Laux, ArXiv (n.d.).","mla":"Hensel, Sebastian, and Tim Laux. “Weak-Strong Uniqueness for the Mean Curvature Flow of Double Bubbles.” ArXiv, 2108.01733, doi:10.48550/arXiv.2108.01733.","ista":"Hensel S, Laux T. Weak-strong uniqueness for the mean curvature flow of double bubbles. arXiv, 2108.01733.","ieee":"S. Hensel and T. Laux, “Weak-strong uniqueness for the mean curvature flow of double bubbles,” arXiv. .","ama":"Hensel S, Laux T. Weak-strong uniqueness for the mean curvature flow of double bubbles. arXiv. doi:10.48550/arXiv.2108.01733","apa":"Hensel, S., & Laux, T. (n.d.). Weak-strong uniqueness for the mean curvature flow of double bubbles. arXiv. https://doi.org/10.48550/arXiv.2108.01733"},"language":[{"iso":"eng"}],"date_created":"2021-09-13T12:17:11Z","oa_version":"Preprint","publication":"arXiv","corr_author":"1","type":"preprint","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/2108.01733"}],"abstract":[{"text":"We derive a weak-strong uniqueness principle for BV solutions to multiphase mean curvature flow of triple line clusters in three dimensions. Our proof is based on the explicit construction of a gradient-flow calibration in the sense of the recent work of Fischer et al. [arXiv:2003.05478] for any such cluster. This extends the two-dimensional construction to the three-dimensional case of surfaces meeting along triple junctions.","lang":"eng"}],"status":"public","external_id":{"arxiv":["2108.01733"]},"project":[{"grant_number":"948819","_id":"0aa76401-070f-11eb-9043-b5bb049fa26d","call_identifier":"H2020","name":"Bridging Scales in Random Materials"}],"date_updated":"2026-04-08T07:01:01Z","arxiv":1,"author":[{"full_name":"Hensel, Sebastian","id":"4D23B7DA-F248-11E8-B48F-1D18A9856A87","last_name":"Hensel","orcid":"0000-0001-7252-8072","first_name":"Sebastian"},{"last_name":"Laux","first_name":"Tim","full_name":"Laux, Tim"}],"related_material":{"record":[{"status":"public","id":"13043","relation":"later_version"},{"id":"10007","status":"public","relation":"dissertation_contains"}]},"month":"08","year":"2021","publication_status":"draft","_id":"10013","date_published":"2021-08-03T00:00:00Z","article_number":"2108.01733","doi":"10.48550/arXiv.2108.01733","acknowledgement":"This project has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (grant agreement No 948819), and from the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany’s Excellence Strategy – EXC-2047/1 – 390685813.","article_processing_charge":"No","day":"03","department":[{"_id":"JuFi"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa":1,"title":"Weak-strong uniqueness for the mean curvature flow of double bubbles"}]