[{"related_material":{"record":[{"relation":"research_data","status":"public","id":"20547"}]},"page":"4213-4234","OA_place":"publisher","year":"2025","publication":"Earth System Science Data","external_id":{"isi":["001560847000001"]},"article_type":"original","title":"DebDaB: A database of supraglacial debris thickness and physical properties","volume":17,"publication_identifier":{"issn":["1866-3516"]},"date_created":"2025-10-27T08:21:22Z","acknowledgement":"This work was supported by SNF project RENOIR (“Resolving the thickness of debris on Earth’s glaciers and its rate of change”; grant no. 204322). This project received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and\r\ninnovation programme (grant no. 772751; RAVEN: “Rapid mass losses of debris covered glaciers in High Mountain Asia”). The authors acknowledge DCGWG of IACS for setting the stage and bringing together the debris-covered glacier community to focus on broader needs transcending a specific research topic and for starting the Zenodo community on debris-covered glaciers, where this database is hosted. The authors thank Achim A. Beylich (topical editor), Ken\r\nMankoff (chief editor), Morgan Jones (reviewer), and an anonymous reviewer for their constructive feedback, comments, and discussions on the database and paper.","article_processing_charge":"Yes","department":[{"_id":"FrPe"}],"citation":{"ama":"Fontrodona-Bach A, Groeneveld L, Miles E, et al. DebDaB: A database of supraglacial debris thickness and physical properties. Earth System Science Data. 2025;17(8):4213-4234. doi:10.5194/essd-17-4213-2025","mla":"Fontrodona-Bach, Adrià, et al. “DebDaB: A Database of Supraglacial Debris Thickness and Physical Properties.” Earth System Science Data, vol. 17, no. 8, Copernicus Publications, 2025, pp. 4213–34, doi:10.5194/essd-17-4213-2025.","ieee":"A. Fontrodona-Bach et al., “DebDaB: A database of supraglacial debris thickness and physical properties,” Earth System Science Data, vol. 17, no. 8. Copernicus Publications, pp. 4213–4234, 2025.","ista":"Fontrodona-Bach A, Groeneveld L, Miles E, McCarthy M, Shaw T, Melo Velasco JV, Pellicciotti F. 2025. DebDaB: A database of supraglacial debris thickness and physical properties. Earth System Science Data. 17(8), 4213–4234.","chicago":"Fontrodona-Bach, Adrià, Lars Groeneveld, Evan Miles, Michael McCarthy, Thomas Shaw, Juan Vicente Melo Velasco, and Francesca Pellicciotti. “DebDaB: A Database of Supraglacial Debris Thickness and Physical Properties.” Earth System Science Data. Copernicus Publications, 2025. https://doi.org/10.5194/essd-17-4213-2025.","short":"A. Fontrodona-Bach, L. Groeneveld, E. Miles, M. McCarthy, T. Shaw, J.V. Melo Velasco, F. Pellicciotti, Earth System Science Data 17 (2025) 4213–4234.","apa":"Fontrodona-Bach, A., Groeneveld, L., Miles, E., McCarthy, M., Shaw, T., Melo Velasco, J. V., & Pellicciotti, F. (2025). DebDaB: A database of supraglacial debris thickness and physical properties. Earth System Science Data. Copernicus Publications. https://doi.org/10.5194/essd-17-4213-2025"},"has_accepted_license":"1","scopus_import":"1","quality_controlled":"1","author":[{"full_name":"Fontrodona-Bach, Adrià","id":"f06891fd-9f42-11ee-8632-a20971c43046","last_name":"Fontrodona-Bach","first_name":"Adrià"},{"last_name":"Groeneveld","first_name":"Lars","full_name":"Groeneveld, Lars"},{"full_name":"Miles, Evan","last_name":"Miles","first_name":"Evan"},{"full_name":"McCarthy, Michael","first_name":"Michael","last_name":"McCarthy","id":"22a2674a-61ce-11ee-94b5-d18813baf16f"},{"first_name":"Thomas","last_name":"Shaw","id":"3caa3f91-1f03-11ee-96ce-e0e553054d6e","orcid":"0000-0001-7640-6152","full_name":"Shaw, Thomas"},{"last_name":"Melo Velasco","id":"2611dec0-b9c6-11ed-9bea-a81c2b17a549","first_name":"Juan Vicente","full_name":"Melo Velasco, Juan Vicente"},{"full_name":"Pellicciotti, Francesca","first_name":"Francesca","orcid":"0000-0002-5554-8087","last_name":"Pellicciotti","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70"}],"file_date_updated":"2025-10-27T08:38:40Z","_id":"20546","PlanS_conform":"1","publisher":"Copernicus Publications","intvolume":" 17","type":"journal_article","DOAJ_listed":"1","isi":1,"publication_status":"published","abstract":[{"text":"Rocky debris covers around 7.3 % of the global glacier area, influencing ice melt rates and the surface mass balance of glaciers, making the dynamics and hydrology of debris-covered glaciers distinct from those of clean-ice glaciers. Accurate representation of debris in models is challenging, as measurements of the physical properties and thickness of the supraglacial debris layer are scarce. Here, we compile a database of measured and reported bulk physical properties and layer thicknesses of supraglacial debris that we call the supraglacial Debris Database (DebDaB) and that is open to community submissions. The majority of the database (90 %) is compiled from 172 sources in the literature, and the remaining 10 % was previously unpublished. DebDaB contains 8741 data entries for supraglacial debris layer thickness, of which 1770 entries also include sub-debris ablation rates, 179 thermal conductivity of debris, 160 aerodynamic surface roughness length, 79 debris albedo, 59 debris emissivity, and 37 debris porosity. The data are distributed over 84 glaciers in 13 regions in the Global Terrestrial Network for Glaciers. We show regional differences in the distribution of debris thickness measurements in DebDaB and fit simplified Østrem curves to 19 glaciers with sufficient debris thickness and ablation data. The data in DebDaB can be used for energy balance, melt, and surface mass balance studies by incorporating site-specific debris properties or for evaluation of remote sensing estimates of debris thickness and surface roughness. They can also help future field campaigns on debris-covered glaciers by identifying observation gaps. DebDaB's uneven spatial coverage points to sampling biases in community efforts to observe debris-covered glaciers, with some regions (e.g. central Europe and South Asia) well-sampled but others having gaps with prevalent debris (e.g. the Andes and Alaska). Debris thickness measurements are mostly concentrated at lower elevations, leaving higher-elevation debris-covered areas undersampled and suggesting that our knowledge of debris properties might not be representative of all elevations. The aims of DebDaB, as an openly available dataset, are to evolve over time, to be updated, and to add to community submissions as new data on supraglacial properties become available. The data described in this paper can be accessed from Zenodo at https://doi.org/10.5281/zenodo.14224835 (Groeneveld et al., 2025).","lang":"eng"}],"ddc":["550"],"status":"public","date_published":"2025-08-29T00:00:00Z","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"OA_type":"gold","month":"08","doi":"10.5194/essd-17-4213-2025","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","issue":"8","oa_version":"Published Version","date_updated":"2025-12-01T15:05:58Z","language":[{"iso":"eng"}],"oa":1,"day":"29","file":[{"content_type":"application/pdf","relation":"main_file","creator":"dernst","access_level":"open_access","date_updated":"2025-10-27T08:38:40Z","success":1,"file_name":"2025_EarthSystemScienceData_FontrodonaBach.pdf","file_size":3842196,"checksum":"f77ebb9825f374134a89e0e6311fe188","date_created":"2025-10-27T08:38:40Z","file_id":"20548"}],"corr_author":"1"},{"article_processing_charge":"No","month":"05","OA_type":"gold","date_created":"2025-10-27T08:42:09Z","main_file_link":[{"url":"https://doi.org/10.5281/zenodo.15441000","open_access":"1"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","department":[{"_id":"FrPe"}],"doi":"10.5281/ZENODO.14224835","ddc":["550"],"abstract":[{"lang":"eng","text":"DebdaB is a database of measured and reported physical properties and thickness of supraglacial debris that is openly available and open to community submissions.\r\n\r\nThe majority of the database (90%) is compiled from 172 sources in the literature, and the remaining 10% has not been published before. DebDaB contains 8,286 data entries for supraglacial debris thickness, of which 1,852 entries also include sub-debris ablation rates, 167 data entries of thermal conductivity of debris, 157 of aerodynamic surface roughness length, 77 of debris albedo, 56 of debris emissivity and 37 of debris porosity. The data are distributed over 83 glaciers in 13 regions in the Global Terrestrial Network for Glaciers. "}],"OA_place":"repository","related_material":{"record":[{"id":"20546","status":"public","relation":"used_in_publication"}]},"date_published":"2025-05-16T00:00:00Z","title":"DebDaB: A database of supraglacial debris thickness and physical properties","status":"public","year":"2025","day":"16","publisher":"Zenodo","type":"research_data_reference","date_updated":"2025-12-01T15:05:58Z","oa_version":"Published Version","citation":{"ama":"Groeneveld L, Fontrodona-Bach A, Miles E, et al. DebDaB: A database of supraglacial debris thickness and physical properties. 2025. doi:10.5281/ZENODO.14224835","ieee":"L. Groeneveld et al., “DebDaB: A database of supraglacial debris thickness and physical properties.” Zenodo, 2025.","mla":"Groeneveld, Lars, et al. DebDaB: A Database of Supraglacial Debris Thickness and Physical Properties. Zenodo, 2025, doi:10.5281/ZENODO.14224835.","ista":"Groeneveld L, Fontrodona-Bach A, Miles E, McCarthy M, Melo Velasco JV, Shaw T, Pellicciotti F, Bauder A, Buri P, Kneib M, Kumar A, Mishra A, Petersen lene, Renner R, Schmid S. 2025. DebDaB: A database of supraglacial debris thickness and physical properties, Zenodo, 10.5281/ZENODO.14224835.","chicago":"Groeneveld, Lars, Adrià Fontrodona-Bach, Evan Miles, Michael McCarthy, Juan Vicente Melo Velasco, Thomas Shaw, Francesca Pellicciotti, et al. “DebDaB: A Database of Supraglacial Debris Thickness and Physical Properties.” Zenodo, 2025. https://doi.org/10.5281/ZENODO.14224835.","short":"L. Groeneveld, A. Fontrodona-Bach, E. Miles, M. McCarthy, J.V. Melo Velasco, T. Shaw, F. Pellicciotti, A. Bauder, P. Buri, M. Kneib, A. Kumar, A. Mishra, lene Petersen, R. Renner, S. Schmid, (2025).","apa":"Groeneveld, L., Fontrodona-Bach, A., Miles, E., McCarthy, M., Melo Velasco, J. V., Shaw, T., … Schmid, S. (2025). DebDaB: A database of supraglacial debris thickness and physical properties. Zenodo. https://doi.org/10.5281/ZENODO.14224835"},"oa":1,"_id":"20547","author":[{"full_name":"Groeneveld, Lars","last_name":"Groeneveld","first_name":"Lars"},{"id":"f06891fd-9f42-11ee-8632-a20971c43046","last_name":"Fontrodona-Bach","first_name":"Adrià","full_name":"Fontrodona-Bach, Adrià"},{"full_name":"Miles, Evan","last_name":"Miles","first_name":"Evan"},{"full_name":"McCarthy, Michael","last_name":"McCarthy","id":"22a2674a-61ce-11ee-94b5-d18813baf16f","first_name":"Michael"},{"full_name":"Melo Velasco, Juan Vicente","first_name":"Juan Vicente","id":"2611dec0-b9c6-11ed-9bea-a81c2b17a549","last_name":"Melo Velasco"},{"orcid":"0000-0001-7640-6152","id":"3caa3f91-1f03-11ee-96ce-e0e553054d6e","last_name":"Shaw","first_name":"Thomas","full_name":"Shaw, Thomas"},{"full_name":"Pellicciotti, Francesca","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","last_name":"Pellicciotti","orcid":"0000-0002-5554-8087","first_name":"Francesca"},{"first_name":"Andreas","last_name":"Bauder","full_name":"Bauder, Andreas"},{"last_name":"Buri","first_name":"Pascal","full_name":"Buri, Pascal"},{"full_name":"Kneib, Marin","first_name":"Marin","last_name":"Kneib"},{"full_name":"Kumar, Amit","last_name":"Kumar","first_name":"Amit"},{"last_name":"Mishra","first_name":"Aditya","full_name":"Mishra, Aditya"},{"full_name":"Petersen, lene","first_name":"lene","last_name":"Petersen"},{"full_name":"Renner, Roman","last_name":"Renner","first_name":"Roman"},{"full_name":"Schmid, Sandro","last_name":"Schmid","first_name":"Sandro"}]},{"page":"30-62","OA_place":"repository","related_material":{"record":[{"relation":"earlier_version","status":"public","id":"15091"}]},"article_type":"original","title":"Chromatic alpha complexes","external_id":{"arxiv":["2212.03128"]},"volume":8,"year":"2025","project":[{"grant_number":"788183","call_identifier":"H2020","name":"Alpha Shape Theory Extended","_id":"266A2E9E-B435-11E9-9278-68D0E5697425"},{"name":"Mathematics, Computer Science","_id":"268116B8-B435-11E9-9278-68D0E5697425","call_identifier":"FWF","grant_number":"Z00342"},{"call_identifier":"FWF","grant_number":"I02979-N35","name":"Persistence and stability of geometric complexes","_id":"2561EBF4-B435-11E9-9278-68D0E5697425"}],"publication":"Foundations of Data Science","date_created":"2025-11-02T23:01:33Z","acknowledgement":"This project has received funding from the European Research\r\nCouncil (ERC) under the European Union’s Horizon 2020 research and innovation\r\nprogramme, grant no. 788183, from the Wittgenstein Prize, Austrian Science Fund\r\n(FWF), grant no. Z 342-N31, and from the DFG Collaborative Research Center TRR\r\n109, ‘Discretization in Geometry and Dynamics’, Austrian Science Fund (FWF),\r\ngrant no. I 02979-N35.","article_processing_charge":"No","publication_identifier":{"eissn":["2639-8001"]},"department":[{"_id":"HeEd"}],"quality_controlled":"1","scopus_import":"1","citation":{"ama":"Cultrera di Montesano S, Draganov O, Edelsbrunner H, Saghafian M. Chromatic alpha complexes. Foundations of Data Science. 2025;8:30-62. doi:10.3934/fods.2025003","ista":"Cultrera di Montesano S, Draganov O, Edelsbrunner H, Saghafian M. 2025. Chromatic alpha complexes. Foundations of Data Science. 8, 30–62.","ieee":"S. Cultrera di Montesano, O. Draganov, H. Edelsbrunner, and M. Saghafian, “Chromatic alpha complexes,” Foundations of Data Science, vol. 8. American Institute of Mathematical Sciences, pp. 30–62, 2025.","mla":"Cultrera di Montesano, Sebastiano, et al. “Chromatic Alpha Complexes.” Foundations of Data Science, vol. 8, American Institute of Mathematical Sciences, 2025, pp. 30–62, doi:10.3934/fods.2025003.","chicago":"Cultrera di Montesano, Sebastiano, Ondrej Draganov, Herbert Edelsbrunner, and Morteza Saghafian. “Chromatic Alpha Complexes.” Foundations of Data Science. American Institute of Mathematical Sciences, 2025. https://doi.org/10.3934/fods.2025003.","apa":"Cultrera di Montesano, S., Draganov, O., Edelsbrunner, H., & Saghafian, M. (2025). Chromatic alpha complexes. Foundations of Data Science. American Institute of Mathematical Sciences. https://doi.org/10.3934/fods.2025003","short":"S. Cultrera di Montesano, O. Draganov, H. Edelsbrunner, M. Saghafian, Foundations of Data Science 8 (2025) 30–62."},"author":[{"full_name":"Cultrera di Montesano, Sebastiano","first_name":"Sebastiano","orcid":"0000-0001-6249-0832","last_name":"Cultrera di Montesano","id":"34D2A09C-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Draganov, Ondrej","orcid":"0000-0003-0464-3823","last_name":"Draganov","id":"2B23F01E-F248-11E8-B48F-1D18A9856A87","first_name":"Ondrej"},{"full_name":"Edelsbrunner, Herbert","first_name":"Herbert","orcid":"0000-0002-9823-6833","id":"3FB178DA-F248-11E8-B48F-1D18A9856A87","last_name":"Edelsbrunner"},{"last_name":"Saghafian","id":"f86f7148-b140-11ec-9577-95435b8df824","first_name":"Morteza","full_name":"Saghafian, Morteza"}],"_id":"20585","intvolume":" 8","publisher":"American Institute of Mathematical Sciences","type":"journal_article","publication_status":"epub_ahead","abstract":[{"lang":"eng","text":"Motivated by applications in medical sciences, we study finite chromatic sets in Euclidean space from a topological perspective. Based on the persistent homology for images, kernels and cokernels, we design provably stable homological quantifiers that describe the geometric micro- and macro-structure of how the color classes mingle. These can be efficiently computed using chromatic variants of Delaunay and alpha complexes, and code that does these computations is provided."}],"date_published":"2025-03-01T00:00:00Z","status":"public","month":"03","OA_type":"green","doi":"10.3934/fods.2025003","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2025-11-04T12:25:47Z","oa_version":"Preprint","arxiv":1,"language":[{"iso":"eng"}],"ec_funded":1,"day":"01","corr_author":"1"},{"date_updated":"2026-02-16T12:43:29Z","oa_version":"Published Version","issue":"2","arxiv":1,"language":[{"iso":"eng"}],"oa":1,"day":"20","file":[{"checksum":"24892d1b5bfa1867eb0a353f10c31b82","date_created":"2025-11-04T12:33:51Z","file_id":"20601","success":1,"file_name":"2025_AstrophysicalJour_Guidry.pdf","file_size":5323398,"creator":"dernst","access_level":"open_access","date_updated":"2025-11-04T12:33:51Z","content_type":"application/pdf","relation":"main_file"}],"ddc":["520"],"publication_status":"published","abstract":[{"text":"We present the discovery of deep, irregular, periodic transits toward the white dwarf ZTF J1944+4557 using follow-up time-series photometry and spectroscopy from Palomar, Keck, McDonald, Perkins, and Lowell observatories. We find a predominant period of 4.9704 hr, consistent with an orbit near the Roche limit of the white dwarf, with individual dips over 30% deep and lasting between 15 and 40 minutes. Similar to the first known white dwarf with transiting debris, WD 1145+017, the transit events are well-defined with prominent out-of-transit phases where the white dwarf appears unobscured. Spectroscopy concurrent with transit photometry reveals that the average Ca K equivalent width remains constant in and out of transit. The broadening observed in several absorption features cannot be reproduced by synthetic photospheric models, suggesting the presence of circumstellar gas. Simultaneous g + r- and g + i-band light curves from the CHIMERA instrument reveal no color dependence to the transit depths, requiring transiting dust grains to have sizes s ≳ 0.2 μm. The transit morphologies appear to be constantly changing at a rate faster than the orbital period. Overall transit activity varies in the system, with transit features completely disappearing during the seven months between our 2023 and 2024 observing seasons and then reappearing in 2025 March, still repeating at 4.9704 hr. Our observations of the complete cessation and resumption of transit activity provide a novel laboratory for constraining the evolution of disrupted debris and processes like disk exhaustion and replenishment timescales at white dwarfs.","lang":"eng"}],"date_published":"2025-10-20T00:00:00Z","status":"public","OA_type":"gold","month":"10","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.3847/1538-4357/adfecb","article_number":"167","scopus_import":"1","quality_controlled":"1","has_accepted_license":"1","citation":{"apa":"Guidry, J. A., Vanderbosch, Z. P., Hermes, J. J., Veras, D., Hollands, M. A., Bhattacharjee, S., … Van Roestel, J. (2025). Transiting planetary debris near the Roche limit of a white dwarf on a 4.97 hr orbit—and its vanishing. The Astrophysical Journal. IOP Publishing. https://doi.org/10.3847/1538-4357/adfecb","short":"J.A. Guidry, Z.P. Vanderbosch, J.J. Hermes, D. Veras, M.A. Hollands, S. Bhattacharjee, I. Caiazzo, K. El-Badry, M.L. Kao, L.B. Ould Rouis, A.C. Rodriguez, J. Van Roestel, The Astrophysical Journal 992 (2025).","chicago":"Guidry, Joseph A., Zachary P. Vanderbosch, J. J. Hermes, Dimitri Veras, Mark A. Hollands, Soumyadeep Bhattacharjee, Ilaria Caiazzo, et al. “Transiting Planetary Debris near the Roche Limit of a White Dwarf on a 4.97 Hr Orbit—and Its Vanishing.” The Astrophysical Journal. IOP Publishing, 2025. https://doi.org/10.3847/1538-4357/adfecb.","ista":"Guidry JA, Vanderbosch ZP, Hermes JJ, Veras D, Hollands MA, Bhattacharjee S, Caiazzo I, El-Badry K, Kao ML, Ould Rouis LB, Rodriguez AC, Van Roestel J. 2025. Transiting planetary debris near the Roche limit of a white dwarf on a 4.97 hr orbit—and its vanishing. The Astrophysical Journal. 992(2), 167.","mla":"Guidry, Joseph A., et al. “Transiting Planetary Debris near the Roche Limit of a White Dwarf on a 4.97 Hr Orbit—and Its Vanishing.” The Astrophysical Journal, vol. 992, no. 2, 167, IOP Publishing, 2025, doi:10.3847/1538-4357/adfecb.","ieee":"J. A. Guidry et al., “Transiting planetary debris near the Roche limit of a white dwarf on a 4.97 hr orbit—and its vanishing,” The Astrophysical Journal, vol. 992, no. 2. IOP Publishing, 2025.","ama":"Guidry JA, Vanderbosch ZP, Hermes JJ, et al. Transiting planetary debris near the Roche limit of a white dwarf on a 4.97 hr orbit—and its vanishing. The Astrophysical Journal. 2025;992(2). doi:10.3847/1538-4357/adfecb"},"file_date_updated":"2025-11-04T12:33:51Z","_id":"20586","author":[{"first_name":"Joseph A.","last_name":"Guidry","full_name":"Guidry, Joseph A."},{"first_name":"Zachary P.","last_name":"Vanderbosch","full_name":"Vanderbosch, Zachary P."},{"last_name":"Hermes","first_name":"J. J.","full_name":"Hermes, J. J."},{"first_name":"Dimitri","last_name":"Veras","full_name":"Veras, Dimitri"},{"full_name":"Hollands, Mark A.","first_name":"Mark A.","last_name":"Hollands"},{"last_name":"Bhattacharjee","first_name":"Soumyadeep","full_name":"Bhattacharjee, Soumyadeep"},{"full_name":"Caiazzo, Ilaria","first_name":"Ilaria","orcid":"0000-0002-4770-5388","last_name":"Caiazzo","id":"8ae5b6e7-2a03-11ee-914d-b58ed7a3b47d"},{"full_name":"El-Badry, Kareem","first_name":"Kareem","last_name":"El-Badry"},{"full_name":"Kao, Malia L.","first_name":"Malia L.","last_name":"Kao"},{"last_name":"Ould Rouis","first_name":"Lou Baya","full_name":"Ould Rouis, Lou Baya"},{"last_name":"Rodriguez","first_name":"Antonio C.","full_name":"Rodriguez, Antonio C."},{"first_name":"Jan","last_name":"Van Roestel","full_name":"Van Roestel, Jan"}],"intvolume":" 992","PlanS_conform":"1","publisher":"IOP Publishing","isi":1,"type":"journal_article","DOAJ_listed":"1","OA_place":"publisher","volume":992,"external_id":{"arxiv":["2508.18348"],"isi":["001592080300001"]},"article_type":"original","title":"Transiting planetary debris near the Roche limit of a white dwarf on a 4.97 hr orbit—and its vanishing","publication":"The Astrophysical Journal","year":"2025","article_processing_charge":"Yes","acknowledgement":"We first extend our gratitude to our anonymous referee, whose careful review and recommendations enhanced this manuscript. In fruitful conversations and correspondence with Tim Cunningham, Jay Farihi, Jim Fuller, Philip Muirhead, Saul Rappaport, Siyi Xu (许偲艺), and Nadia Zakamska, we found guidance that improved our interpretation of these results. We are deeply grateful for the observing support by John Kuehne at McDonald Observatory and Colt Pauley at the Perkins Telescope Observatory. This material is based upon work supported by the National Aeronautics and Space Administration under grant No. 80NSSC23K1068 issued through the Science Mission Directorate. J.A.G. is supported by the National Science Foundation Graduate Research Fellowship Program under grant No. 2234657.\r\n\r\nThis worked is based on observations obtained with the Samuel Oschin Telescope 48 inch and the 60 inch Telescope at the Palomar Observatory as part of the Zwicky Transient Facility project. ZTF is supported by the National Science Foundation under grants No. AST-1440341 and AST-2034437 and a collaboration including current partners Caltech, IPAC, the Oskar Klein Center at Stockholm University, the University of Maryland, University of California, Berkeley, the University of Wisconsin at Milwaukee, University of Warwick, Ruhr University, Cornell University, Northwestern University and Drexel University. Operations are conducted by COO, IPAC, and UW.\r\n\r\nSome of the data presented herein were obtained at Keck Observatory, which is a private 501(c)3 non-profit organization operated as a scientific partnership among the California Institute of Technology, the University of California, and the National Aeronautics and Space Administration. The Observatory was made possible by the generous financial support of the W. M. Keck Foundation. The authors wish to recognize and acknowledge the very significant cultural role and reverence that the summit of Maunakea has always had within the Native Hawaiian community. We are most fortunate to have the opportunity to conduct observations from this mountain.\r\n\r\nThis work has made use of data from the European Space Agency (ESA) mission Gaia (https://www.cosmos.esa.int/gaia), processed by the Gaia Data Processing and Analysis Consortium (DPAC, https://www.cosmos.esa.int/web/gaia/dpac/consortium). Funding for the DPAC has been provided by national institutions, in particular the institutions participating in the Gaia Multilateral Agreement.\r\n\r\nThis publication also makes use of data products from NEOWISE, which is a project of the Jet Propulsion Laboratory/California Institute of Technology, funded by the Planetary Science Division of the National Aeronautics and Space Administration.\r\n\r\nThis work is based in part on observations made with the Spitzer Space Telescope, which was operated by the Jet Propulsion Laboratory, California Institute of Technology under a contract with NASA.\r\n\r\nThe Pan-STARRS1 Surveys (PS1) and the PS1 public science archive have been made possible through contributions by the Institute for Astronomy, the University of Hawaii, the Pan-STARRS Project Office, the Max-Planck Society and its participating institutes, the Max Planck Institute for Astronomy, Heidelberg and the Max Planck Institute for Extraterrestrial Physics, Garching, The Johns Hopkins University, Durham University, the University of Edinburgh, the Queen’s University Belfast, the Harvard-Smithsonian Center for Astrophysics, the Las Cumbres Observatory Global Telescope Network Incorporated, the National Central University of Taiwan, the Space Telescope Science Institute, the National Aeronautics and Space Administration under grant No. NNX08AR22G issued through the Planetary Science Division of the NASA Science Mission Directorate, the National Science Foundation grant No. AST-1238877, the University of Maryland, Eotvos Lorand University (ELTE), the Los Alamos National Laboratory, and the Gordon and Betty Moore Foundation.\r\n\r\nThis research relied upon the SIMBAD and VizieR databases operated by CDS (Strasbourg, France) and the bibliographic resources of The SAO Astrophysics Data System.\r\n\r\nFacilities: PO:1.2m - Palomar Observatory's 1.2 meter Samuel Oschin Telescope (Zwicky Transient Facility) - , Hale (CHIMERA, DBSP), Struve - McDonald Observatory's 2.1m Otto Struve Telescope(ProEM), Perkins - Lowell Observatory's 72in Perkins Telescope (PRISM), LDT - (LMI), Keck:I - KECK I Telescope (LRIS), Gaia - , PS1 - Panoramic Survey Telescope and Rapid Response System Telescope #1 (Pan-STARRS), Spitzer (IRAC) - , WISE - Wide-field Infrared Survey Explorer.\r\n\r\nSoftware: Astropy (Astropy Collaboration et al. 2013, 2018, 2022), astroquery (A. Ginsburg et al. 2019), ccdproc (M. Craig et al. 2017), cuvarbase (J. Hoffman 2022), extinction (K. Barbary 2016), hipercam (V. S. Dhillon et al. 2021), lmfit (M. Newville et al. 2014), matplotlib (J. D. Hunter 2007), numpy (C. R. Harris et al. 2020), pandas (The pandas Development Team 2025), phot2lc (Z. Vanderbosch 2023), photutils (L. Bradley et al. 2024), Pyriod (K. Bell 2022), scipy (P. Virtanen et al. 2020).","date_created":"2025-11-02T23:01:33Z","publication_identifier":{"issn":["0004-637X"],"eissn":["1538-4357"]},"department":[{"_id":"IlCa"}]},{"publication_identifier":{"issn":["1538-3873"]},"date_created":"2025-11-02T23:01:34Z","acknowledgement":"This work is based on observations obtained with the Samuel Oschin Telescope 48 inch and the 60 inch Telescope at the Palomar Observatory as part of the Zwicky Transient Facility project. ZTF is supported by the National Science Foundation under grant Nos. AST-1440341 and AST-2034437 and a collaboration including current partners Caltech, IPAC, the Oskar Klein Center at Stockholm University, the University of Maryland, University of California, Berkeley, the University of Wisconsin at Milwaukee, University of Warwick, Ruhr University Bochum, Cornell University, Northwestern University, and Drexel University. Operations are conducted by COO, IPAC, and UW.\r\n\r\nThis work has made use of data from the European Space Agency (ESA) mission Gaia (https://www.cosmos.esa.int/gaia), processed by the Gaia Data Processing and Analysis Consortium (DPAC; https://www.cosmos.esa.int/web/gaia/dpac/consortium). Funding for the DPAC has been provided by national institutions, in particular, the institutions participating in the Gaia Multilateral Agreement.\r\n\r\nWe are grateful to the staffs of Palomar Observatory and the Hobby-Eberly Telescope for assistance with the observations and data management. The Liverpool Telescope is operated on the island of La Palma by Liverpool John Moores University in the Spanish Observatorio del Roque de los Muchachos of the Instituto de Astrofisica de Canarias with financial support from the UK Science and Technology Facilities Council.\r\n\r\nThe Low-Resolution Spectrograph 2 (LRS2) on HET was developed and funded by the University of Texas at Austin McDonald Observatory and Department of Astronomy, and by Pennsylvania State University. We thank the Leibniz-Institut für Astrophysik Potsdam (AIP) and the Institut für Astrophysik Göttingen (IAG) for their contributions to the construction of the integral field units. We acknowledge the Texas Advanced Computing Center (TACC) at The University of Texas at Austin for providing high performance computing, visualization, and storage resources that have contributed to the results reported within this paper.\r\n\r\nThe Isaac Newton Telescope is operated on the island of La Palma by the Isaac Newton Group of Telescopes in the Spanish Observatorio del Roque de los Muchachos of the Instituto de Astrofísica de Canarias\r\n\r\nS.B. thanks Frank J. Masci and Zachary P. Vanderbosch for useful discussions and suggestions regarding solving the issues with ZTF forced photometry on extended sources. S.B. also thanks Jim Fuller, Charles C. Steidel, Lynne Hillenbrand, and Adolfo Carvalho for useful discussions on methods and science. S.B. acknowledges financial support from the Wallace L. W. Sargent Graduate Fellowship during the first year of his graduate studies at Caltech. N.C. was supported through the Cancer Research UK grant A24042.\r\n\r\nN.R. is supported by the Deutsche Forschungsgemeinschaft (DFG) through grant RE3915/2-1.\r\n\r\nD.J. acknowledges support from the Agencia Estatal de Investigación del Ministerio de Ciencia, Innovación y Universidades (MICIU/AEI) under grant “Nebulosas planetarias como clave para comprender la evolución de estrellas binarias” and the European Regional Development Fund (ERDF) with reference PID-2022-136653NA-I00 (DOI:10.13039/501100011033). D.J. also acknowledges support from the Agencia Estatal de Investigación del Ministerio de Ciencia, Innovación y Universidades (MICIU/AEI) under grant “Revolucionando el conocimiento de la evolución de estrellas poco masivas” and the the European Union NextGenerationEU/PRTR with reference CNS2023-143910 (DOI:10.13039/501100011033).\r\n\r\nWe have used Python packages Numpy (Harris et al. 2020), SciPy (Virtanen et al. 2020), Matplotlib (Hunter 2007), Pandas (pandas development team 2020), Astropy (Astropy Collaboration et al. 2013, 2018), and Astroquery (Ginsburg et al. 2019) at various stages of this research.","article_processing_charge":"Yes (in subscription journal)","department":[{"_id":"IlCa"}],"OA_place":"publisher","year":"2025","publication":"Publications of the Astronomical Society of the Pacific","title":"Variability of central stars of planetary nebulae with the Zwicky Transient Facility. II. Long-timescale variables including wide binary and late thermal pulse candidates","article_type":"original","external_id":{"arxiv":["2502.18651"],"isi":["001595690000001"]},"volume":137,"PlanS_conform":"1","publisher":"IOP Publishing","intvolume":" 137","type":"journal_article","isi":1,"citation":{"chicago":"Bhattacharjee, Soumyadeep, Nicole Reindl, Howard E. Bond, Klaus Werner, Gregory R. Zeimann, David Jones, Kareem El-Badry, et al. “Variability of Central Stars of Planetary Nebulae with the Zwicky Transient Facility. II. Long-Timescale Variables Including Wide Binary and Late Thermal Pulse Candidates.” Publications of the Astronomical Society of the Pacific. IOP Publishing, 2025. https://doi.org/10.1088/1538-3873/ae051e.","apa":"Bhattacharjee, S., Reindl, N., Bond, H. E., Werner, K., Zeimann, G. R., Jones, D., … Smith, R. (2025). Variability of central stars of planetary nebulae with the Zwicky Transient Facility. II. Long-timescale variables including wide binary and late thermal pulse candidates. Publications of the Astronomical Society of the Pacific. IOP Publishing. https://doi.org/10.1088/1538-3873/ae051e","short":"S. Bhattacharjee, N. Reindl, H.E. Bond, K. Werner, G.R. Zeimann, D. Jones, K. El-Badry, N. Mackensen, N. Chornay, S.R. Kulkarni, I. Caiazzo, J. Van Roestel, A.C. Rodriguez, T.A. Prince, B. Rusholme, R.R. Laher, R. Smith, Publications of the Astronomical Society of the Pacific 137 (2025).","ama":"Bhattacharjee S, Reindl N, Bond HE, et al. Variability of central stars of planetary nebulae with the Zwicky Transient Facility. II. Long-timescale variables including wide binary and late thermal pulse candidates. Publications of the Astronomical Society of the Pacific. 2025;137(10). doi:10.1088/1538-3873/ae051e","ieee":"S. Bhattacharjee et al., “Variability of central stars of planetary nebulae with the Zwicky Transient Facility. II. Long-timescale variables including wide binary and late thermal pulse candidates,” Publications of the Astronomical Society of the Pacific, vol. 137, no. 10. IOP Publishing, 2025.","mla":"Bhattacharjee, Soumyadeep, et al. “Variability of Central Stars of Planetary Nebulae with the Zwicky Transient Facility. II. Long-Timescale Variables Including Wide Binary and Late Thermal Pulse Candidates.” Publications of the Astronomical Society of the Pacific, vol. 137, no. 10, 104206, IOP Publishing, 2025, doi:10.1088/1538-3873/ae051e.","ista":"Bhattacharjee S, Reindl N, Bond HE, Werner K, Zeimann GR, Jones D, El-Badry K, Mackensen N, Chornay N, Kulkarni SR, Caiazzo I, Van Roestel J, Rodriguez AC, Prince TA, Rusholme B, Laher RR, Smith R. 2025. Variability of central stars of planetary nebulae with the Zwicky Transient Facility. II. Long-timescale variables including wide binary and late thermal pulse candidates. Publications of the Astronomical Society of the Pacific. 137(10), 104206."},"has_accepted_license":"1","article_number":"104206","scopus_import":"1","quality_controlled":"1","author":[{"first_name":"Soumyadeep","last_name":"Bhattacharjee","full_name":"Bhattacharjee, Soumyadeep"},{"first_name":"Nicole","last_name":"Reindl","full_name":"Reindl, Nicole"},{"last_name":"Bond","first_name":"Howard E.","full_name":"Bond, Howard E."},{"full_name":"Werner, Klaus","first_name":"Klaus","last_name":"Werner"},{"full_name":"Zeimann, Gregory R.","last_name":"Zeimann","first_name":"Gregory R."},{"full_name":"Jones, David","last_name":"Jones","first_name":"David"},{"last_name":"El-Badry","first_name":"Kareem","full_name":"El-Badry, Kareem"},{"first_name":"Nina","last_name":"Mackensen","full_name":"Mackensen, Nina"},{"last_name":"Chornay","first_name":"Nicholas","full_name":"Chornay, Nicholas"},{"full_name":"Kulkarni, S. R.","first_name":"S. R.","last_name":"Kulkarni"},{"orcid":"0000-0002-4770-5388","last_name":"Caiazzo","id":"8ae5b6e7-2a03-11ee-914d-b58ed7a3b47d","first_name":"Ilaria","full_name":"Caiazzo, Ilaria"},{"full_name":"Van Roestel, Jan","last_name":"Van Roestel","first_name":"Jan"},{"last_name":"Rodriguez","first_name":"Antonio C.","full_name":"Rodriguez, Antonio C."},{"first_name":"Thomas A.","last_name":"Prince","full_name":"Prince, Thomas A."},{"first_name":"Ben","last_name":"Rusholme","full_name":"Rusholme, Ben"},{"last_name":"Laher","first_name":"Russ R.","full_name":"Laher, Russ R."},{"full_name":"Smith, Roger","first_name":"Roger","last_name":"Smith"}],"file_date_updated":"2025-11-04T08:26:39Z","_id":"20588","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"OA_type":"hybrid","month":"10","doi":"10.1088/1538-3873/ae051e","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","abstract":[{"lang":"eng","text":"In this second paper on our variability survey of central stars of planetary nebulae (CSPNe) using the Zwicky Transient Facility (ZTF), we report 11 long-timescale variables with variability timescales ranging from months to years. We also present preliminary analyses based on spectroscopic and/or photometric follow-up observations for six of them. Among them is NGC 6833, which shows a 980 days periodic variability with strange characteristics: “triangle-shaped” brightening in r, i, and WISE bands but almost coincidental shallow dips in the g-band. The most plausible explanation is a wide binary with the photometric period being the orbital period. Long-period near-sinusoidal variability was detected in two other systems, NGC 6905 and Kn 26, with periods of 700 days and 230 days, respectively, making them additional wide-binary candidates. The latter also shows a short period at 1.18 hr. We then present CTSS 2 and K 3-5, which show brightening and significant reddening over the whole ZTF baseline. A stellar model fit to the optical spectrum of CTSS 2 reveals it to be one of the youngest post-AGB CSPNe known. Both show high-density emission-line cores. We propose these to be late-thermal-pulse candidates, currently evolving towards the AGB phase. We then present recent HST/COS ultraviolet spectroscopy of the known wide-binary candidate LoTr 1, showing that the hot star is a spectroscopic twin of the extremely hot white dwarf in UCAC2 46706450. Similar to this object, LoTr 1 also has a fast rotating wide subgiant companion. We suggest that the long photometric period of 11 yr is the binary orbital period. Finally, we briefly discuss the ZTF light curves of the remaining variables, namely Tan 2, K 3-20, WHTZ 3, Kn J1857+3931, and IPHAS J1927+0814. With these examples, we present the effectiveness of the von Neumann statistics and Pearson Skew-based metric space in searching for long-timescale variables."}],"publication_status":"published","ddc":["520"],"status":"public","date_published":"2025-10-01T00:00:00Z","day":"01","file":[{"date_updated":"2025-11-04T08:26:39Z","creator":"dernst","access_level":"open_access","content_type":"application/pdf","relation":"main_file","date_created":"2025-11-04T08:26:39Z","file_id":"20599","checksum":"cc7d00c349d48458accb0d3df67e4879","success":1,"file_size":12677603,"file_name":"2025_PASP_BhattacharjeeS.pdf"}],"arxiv":1,"issue":"10","oa_version":"Published Version","date_updated":"2025-12-01T15:13:50Z","oa":1,"language":[{"iso":"eng"}]},{"department":[{"_id":"JoMa"}],"article_processing_charge":"No","acknowledgement":"MA acknowledges financial support from Comunidad de Madrid under Atracción de Talento grant 2020-T2/TIC-19971. This work has made use of the Rainbow Cosmological Surveys Database, which is operated by the Centro de Astrobiología (CAB/INTA), partnered with the University of California Observatories at Santa Cruz (UCO/Lick,UCSC). The project that gave rise to these results received the support of a fellowship from the “la Caixa” Foundation (ID 100010434). The fellowship code is LCF/BQ/PR24/12050015. LC acknowledges support from grants PID2022-139567NB-I00 and PIB2021-127718NB-I00 funded by the Spanish Ministry of Science and Innovation/State Agency of Research MCIN/AEI/10.13039/501100011033 and by “ERDF A way of making Europe”. This work is based on observations made with the NASA/ ESA/CSA JWST. The data were obtained from the Mikulski Archive for Space Telescopes (MAST) at the Space Telescope Science Institute, which is operated by the Association of Universities for Research in Astronomy, Inc., under NASA contract NAS 5-03127 for JWST.","date_created":"2025-11-02T23:01:34Z","publication_identifier":{"eissn":["1432-0746"],"issn":["0004-6361"]},"volume":702,"external_id":{"arxiv":["2508.16951"],"isi":["001600932400021"]},"article_type":"original","title":"MIDIS: Unveiling the star formation history in massive galaxies at 1 < z < 4.5 with spectro-photometric analysis","publication":"Astronomy & Astrophysics","year":"2025","OA_place":"publisher","isi":1,"type":"journal_article","intvolume":" 702","publisher":"EDP Sciences","PlanS_conform":"1","_id":"20589","file_date_updated":"2025-11-04T09:36:30Z","author":[{"full_name":"Annunziatella, M.","last_name":"Annunziatella","first_name":"M."},{"last_name":"P’Erez-Gonz’Alez","first_name":"P. G.","full_name":"P’Erez-Gonz’Alez, P. G."},{"last_name":"Álvarez-Márquez","first_name":"J.","full_name":"Álvarez-Márquez, J."},{"full_name":"Costantin, L.","last_name":"Costantin","first_name":"L."},{"full_name":"Iani, Edoardo","id":"4053390a-6b68-11ef-9828-a3b8adef8d0a","last_name":"Iani","orcid":"0000-0001-8386-3546","first_name":"Edoardo"},{"last_name":"Labiano","first_name":"Unknown","full_name":"Labiano, Unknown"},{"last_name":"Rinaldi","first_name":"P.","full_name":"Rinaldi, P."},{"first_name":"L.","last_name":"Boogaard","full_name":"Boogaard, L."},{"full_name":"Meyer, R. A.","last_name":"Meyer","first_name":"R. A."},{"last_name":"Östlin","first_name":"G.","full_name":"Östlin, G."},{"full_name":"Colina, L.","last_name":"Colina","first_name":"L."},{"first_name":"J.","last_name":"Melinder","full_name":"Melinder, J."},{"first_name":"I.","last_name":"Jermann","full_name":"Jermann, I."},{"first_name":"S.","last_name":"Gillman","full_name":"Gillman, S."},{"last_name":"Langeroodi","first_name":"D.","full_name":"Langeroodi, D."},{"first_name":"J.","last_name":"Hjorth","full_name":"Hjorth, J."},{"last_name":"Alonso-Herrero","first_name":"A.","full_name":"Alonso-Herrero, A."},{"last_name":"Eckart","first_name":"A.","full_name":"Eckart, A."},{"first_name":"F.","last_name":"Walter","full_name":"Walter, F."},{"last_name":"Van Der Werf","first_name":"P. P.","full_name":"Van Der Werf, P. P."},{"full_name":"Bik, A.","first_name":"A.","last_name":"Bik"},{"full_name":"Peißker, F.","last_name":"Peißker","first_name":"F."},{"first_name":"K. I.","last_name":"Caputi","full_name":"Caputi, K. I."},{"first_name":"M.","last_name":"García-Marín","full_name":"García-Marín, M."},{"first_name":"G.","last_name":"Wright","full_name":"Wright, G."},{"first_name":"T. R.","last_name":"Greve","full_name":"Greve, T. R."}],"scopus_import":"1","quality_controlled":"1","article_number":"A224","has_accepted_license":"1","citation":{"ama":"Annunziatella M, P’Erez-Gonz’Alez PG, Álvarez-Márquez J, et al. MIDIS: Unveiling the star formation history in massive galaxies at 1 < z < 4.5 with spectro-photometric analysis. Astronomy & Astrophysics. 2025;702. doi:10.1051/0004-6361/202453298","ista":"Annunziatella M, P’Erez-Gonz’Alez PG, Álvarez-Márquez J, Costantin L, Iani E, Labiano U, Rinaldi P, Boogaard L, Meyer RA, Östlin G, Colina L, Melinder J, Jermann I, Gillman S, Langeroodi D, Hjorth J, Alonso-Herrero A, Eckart A, Walter F, Van Der Werf PP, Bik A, Peißker F, Caputi KI, García-Marín M, Wright G, Greve TR. 2025. MIDIS: Unveiling the star formation history in massive galaxies at 1 < z < 4.5 with spectro-photometric analysis. Astronomy & Astrophysics. 702, A224.","mla":"Annunziatella, M., et al. “MIDIS: Unveiling the Star Formation History in Massive Galaxies at 1 < z < 4.5 with Spectro-Photometric Analysis.” Astronomy & Astrophysics, vol. 702, A224, EDP Sciences, 2025, doi:10.1051/0004-6361/202453298.","ieee":"M. Annunziatella et al., “MIDIS: Unveiling the star formation history in massive galaxies at 1 < z < 4.5 with spectro-photometric analysis,” Astronomy & Astrophysics, vol. 702. EDP Sciences, 2025.","chicago":"Annunziatella, M., P. G. P’Erez-Gonz’Alez, J. Álvarez-Márquez, L. Costantin, Edoardo Iani, Unknown Labiano, P. Rinaldi, et al. “MIDIS: Unveiling the Star Formation History in Massive Galaxies at 1 < z < 4.5 with Spectro-Photometric Analysis.” Astronomy & Astrophysics. EDP Sciences, 2025. https://doi.org/10.1051/0004-6361/202453298.","apa":"Annunziatella, M., P’Erez-Gonz’Alez, P. G., Álvarez-Márquez, J., Costantin, L., Iani, E., Labiano, U., … Greve, T. R. (2025). MIDIS: Unveiling the star formation history in massive galaxies at 1 < z < 4.5 with spectro-photometric analysis. Astronomy & Astrophysics. EDP Sciences. https://doi.org/10.1051/0004-6361/202453298","short":"M. Annunziatella, P.G. P’Erez-Gonz’Alez, J. Álvarez-Márquez, L. Costantin, E. Iani, U. Labiano, P. Rinaldi, L. Boogaard, R.A. Meyer, G. Östlin, L. Colina, J. Melinder, I. Jermann, S. Gillman, D. Langeroodi, J. Hjorth, A. Alonso-Herrero, A. Eckart, F. Walter, P.P. Van Der Werf, A. Bik, F. Peißker, K.I. Caputi, M. García-Marín, G. Wright, T.R. Greve, Astronomy & Astrophysics 702 (2025)."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.1051/0004-6361/202453298","OA_type":"diamond","month":"10","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"date_published":"2025-10-24T00:00:00Z","status":"public","ddc":["520"],"abstract":[{"lang":"eng","text":"Context. This paper investigates the star formation histories (SFHs) of a sample of massive galaxies (M⋆ ≥ 1010 M⊙) in the redshift range 1 < z < 4.5.\r\nMethods. We analyzed spectro-photometric data, combining broadband photometry from HST and JWST with low-resolution grism spectroscopy from JWST/NIRISS, obtained as part of the MIRI Deep Imaging Survey program. SFHs were derived through spectral energy distribution fitting using two independent codes, BAGPIPES and synthesizer, under various SFH assumptions. This approach enables a comprehensive assessment of the biases introduced by different modeling choices.\r\nResults. The inclusion of NIRISS spectroscopy, even with its low resolution, significantly improves constraints on key physical parameters, such as the mass-weighted stellar age (tM) and formation redshift (zform), by narrowing their posterior distributions. The massive galaxies in our sample exhibit rapid stellar mass assembly, forming 50% of their mass between 3 ≤ z ≤ 9. The highest inferred formation redshifts are compatible with elevated star formation efficiencies (ϵ) at early epochs. Nonparametric SFHs generally imply an earlier and slower mass assembly compared to parametric forms, highlighting the sensitivity of inferred formation timescales to the chosen SFH model–particularly for galaxies at z < 2. We find that quiescent galaxies are, on average, older (tM ∼ 1.1 Gyr) and assembled more rapidly at earlier times than their star-forming counterparts. These findings support the “downsizing” scenario, in which more massive and passive systems form earlier and more efficiently."}],"publication_status":"published","file":[{"file_size":5107702,"file_name":"2025_AstronomyAstrophysics_Annunziatella.pdf","success":1,"file_id":"20600","date_created":"2025-11-04T09:36:30Z","checksum":"0cd0c3fc75b7f6589088a2b7bd60c0ed","relation":"main_file","content_type":"application/pdf","date_updated":"2025-11-04T09:36:30Z","access_level":"open_access","creator":"dernst"}],"day":"24","language":[{"iso":"eng"}],"oa":1,"date_updated":"2026-02-16T12:14:12Z","oa_version":"Published Version","arxiv":1},{"language":[{"iso":"eng"}],"ec_funded":1,"oa":1,"date_updated":"2025-12-01T15:15:18Z","oa_version":"Published Version","corr_author":"1","day":"18","date_published":"2025-10-18T00:00:00Z","status":"public","ddc":["550"],"abstract":[{"text":"Moist convection is a fundamental process occurring in the Earth's atmosphere. It plays a central role in the weather and climate of the Tropics, where, to first order, the heating of the atmosphere by convection is in balance with the cooling of the atmosphere by the emission of radiation to outer space. In this study, we use a cloud-resolving model in radiative–convective equilibrium with an imposed constant rate of radiative cooling and study the response of moist convection to varying this rate of radiative cooling. In particular, we study two types of simulation: varying air temperature (VAT) simulations, where the air temperature is allowed to adjust to the imposed radiative cooling, and constant air temperature (CAT) simulations, where the surface temperature is tuned to ensure that the atmospheric temperature profile in the domain is constant. We recover the previously known result that, in response to increasing radiative cooling, the area of convection expands rapidly, while the intensity of convection does not change. We find that this response is explained by the increased boundary-layer variability in simulations with greater radiative cooling, which compensates for the decreasing temperature by adding a larger initial velocity close to the cloud base. We also propose a fundamental scaling of the non-dimensional cumulus mass flux in moist convection, which is robust across models of different complexity. We aim to bridge the gap between highly idealised prototypes of moist convection, such as the “Rainy–Bénard convection” introduced by Vallis et al., and comprehensive cloud-resolving models.","lang":"eng"}],"publication_status":"epub_ahead","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.1002/qj.70044","month":"10","OA_type":"hybrid","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1002/qj.70044"}],"_id":"20590","author":[{"full_name":"Agasthya, Lokahith N","first_name":"Lokahith N","last_name":"Agasthya","id":"cd100965-0804-11ed-9c55-f4878ff4e877"},{"first_name":"Caroline J","id":"f978ccb0-3f7f-11eb-b193-b0e2bd13182b","last_name":"Muller","orcid":"0000-0001-5836-5350","full_name":"Muller, Caroline J"}],"quality_controlled":"1","article_number":"e70044","scopus_import":"1","has_accepted_license":"1","citation":{"ama":"Agasthya LN, Muller CJ. Moist convection and radiative cooling: Dynamical response and scaling. Quarterly Journal of the Royal Meteorological Society. 2025. doi:10.1002/qj.70044","mla":"Agasthya, Lokahith N., and Caroline J. Muller. “Moist Convection and Radiative Cooling: Dynamical Response and Scaling.” Quarterly Journal of the Royal Meteorological Society, e70044, Wiley, 2025, doi:10.1002/qj.70044.","ieee":"L. N. Agasthya and C. J. Muller, “Moist convection and radiative cooling: Dynamical response and scaling,” Quarterly Journal of the Royal Meteorological Society. Wiley, 2025.","ista":"Agasthya LN, Muller CJ. 2025. Moist convection and radiative cooling: Dynamical response and scaling. Quarterly Journal of the Royal Meteorological Society., e70044.","chicago":"Agasthya, Lokahith N, and Caroline J Muller. “Moist Convection and Radiative Cooling: Dynamical Response and Scaling.” Quarterly Journal of the Royal Meteorological Society. Wiley, 2025. https://doi.org/10.1002/qj.70044.","apa":"Agasthya, L. N., & Muller, C. J. (2025). Moist convection and radiative cooling: Dynamical response and scaling. Quarterly Journal of the Royal Meteorological Society. Wiley. https://doi.org/10.1002/qj.70044","short":"L.N. Agasthya, C.J. Muller, Quarterly Journal of the Royal Meteorological Society (2025)."},"isi":1,"type":"journal_article","publisher":"Wiley","PlanS_conform":"1","title":"Moist convection and radiative cooling: Dynamical response and scaling","external_id":{"isi":["001595821400001"]},"article_type":"original","publication":"Quarterly Journal of the Royal Meteorological Society","project":[{"name":"IST-BRIDGE: International postdoctoral program","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c","grant_number":"101034413","call_identifier":"H2020"},{"_id":"629205d8-2b32-11ec-9570-e1356ff73576","name":"Organization of CLoUdS, and implications of Tropical cyclones and for the Energetics of the tropics, in current and waRming climate","call_identifier":"H2020","grant_number":"805041"}],"year":"2025","OA_place":"publisher","department":[{"_id":"CaMu"}],"article_processing_charge":"Yes (via OA deal)","date_created":"2025-11-02T23:01:34Z","acknowledgement":"The authors gratefully acknowledge discussions with Professor Robert Plant (University of Reading, UK), Professor Steve Sherwood (University of New South Wales, Australia), Professor Steve Tobias, Professor Douglas Parker, and Gregory Dritschel (University of Leeds, UK). Discussions with colleagues at the Institute of Science and Technology Austria played a large role in shaping this study. The authors are particularly grateful for inputs and discussions from Dr. Jiawei Bao, Dr. Alejandro Casallas, and Alzbeta Pechacova.\r\nThis project has received funding from the European Union's Horizon 2020 research and innovation programme under the Marie Sklodowska–Curie grant agreement No. 101034413. C. Muller gratefully acknowledges funding from the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation program (Project CLUSTER, Grant Agreement No. 805041). This research was supported by the Scientific Service Units (SSU) of IST Austria through resources provided by Scientific Computing (SciComp). Open Access funding provided by Institute of Science and Technology Austria/KEMÖ.","publication_identifier":{"eissn":["1477-870X"],"issn":["0035-9009"]},"acknowledged_ssus":[{"_id":"ScienComp"}]},{"file_date_updated":"2025-11-04T07:34:05Z","_id":"20591","author":[{"full_name":"Brigati, Giovanni","id":"63ff57e8-1fbb-11ee-88f2-f558ffc59cf1","last_name":"Brigati","first_name":"Giovanni"},{"last_name":"Pedrotti","id":"d3ac8ac6-dc8d-11ea-abe3-e2a9628c4c3c","first_name":"Francesco","full_name":"Pedrotti, Francesco"}],"quality_controlled":"1","article_number":"71","scopus_import":"1","has_accepted_license":"1","citation":{"ama":"Brigati G, Pedrotti F. Heat flow, log-concavity, and Lipschitz transport maps. Electronic Communications in Probability. 2025;30. doi:10.1214/25-ECP717","ista":"Brigati G, Pedrotti F. 2025. Heat flow, log-concavity, and Lipschitz transport maps. Electronic Communications in Probability. 30, 71.","mla":"Brigati, Giovanni, and Francesco Pedrotti. “Heat Flow, Log-Concavity, and Lipschitz Transport Maps.” Electronic Communications in Probability, vol. 30, 71, Institute of Mathematical Statistics, 2025, doi:10.1214/25-ECP717.","ieee":"G. Brigati and F. Pedrotti, “Heat flow, log-concavity, and Lipschitz transport maps,” Electronic Communications in Probability, vol. 30. Institute of Mathematical Statistics, 2025.","chicago":"Brigati, Giovanni, and Francesco Pedrotti. “Heat Flow, Log-Concavity, and Lipschitz Transport Maps.” Electronic Communications in Probability. Institute of Mathematical Statistics, 2025. https://doi.org/10.1214/25-ECP717.","short":"G. Brigati, F. Pedrotti, Electronic Communications in Probability 30 (2025).","apa":"Brigati, G., & Pedrotti, F. (2025). Heat flow, log-concavity, and Lipschitz transport maps. Electronic Communications in Probability. Institute of Mathematical Statistics. https://doi.org/10.1214/25-ECP717"},"isi":1,"type":"journal_article","DOAJ_listed":"1","intvolume":" 30","publisher":"Institute of Mathematical Statistics","PlanS_conform":"1","volume":30,"external_id":{"arxiv":["2404.15205"],"isi":["001611557000018"]},"article_type":"original","title":"Heat flow, log-concavity, and Lipschitz transport maps","publication":"Electronic Communications in Probability","project":[{"_id":"fc31cba2-9c52-11eb-aca3-ff467d239cd2","name":"Taming Complexity in Partial Differential Systems","grant_number":"F6504"},{"grant_number":"101034413","call_identifier":"H2020","name":"IST-BRIDGE: International postdoctoral program","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c"}],"year":"2025","OA_place":"publisher","related_material":{"record":[{"relation":"earlier_version","id":"17353","status":"public"}]},"department":[{"_id":"JaMa"}],"article_processing_charge":"Yes","acknowledgement":"This research was funded in part by the Austrian Science Fund (FWF) project 10.55776/F65 and by the European Union’s Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie grant agreement No 101034413. The authors thank Professors Jean Dolbeault, Jan Maas, and Nikita Simonov for many useful comments, and Professors Kazuhiro Ishige, Asuka Takatsu, and Yair Shenfeld for inspiring interactions.","date_created":"2025-11-02T23:01:35Z","publication_identifier":{"eissn":["1083-589X"]},"oa":1,"ec_funded":1,"language":[{"iso":"eng"}],"date_updated":"2025-12-01T15:08:54Z","oa_version":"Published Version","arxiv":1,"corr_author":"1","file":[{"file_size":278078,"file_name":"2025_ElectronJourProbab_Brigati.pdf","success":1,"checksum":"67858edbd74658fe38955fa1216f2f18","file_id":"20596","date_created":"2025-11-04T07:34:05Z","relation":"main_file","content_type":"application/pdf","access_level":"open_access","creator":"dernst","date_updated":"2025-11-04T07:34:05Z"}],"day":"25","date_published":"2025-09-25T00:00:00Z","status":"public","ddc":["500"],"abstract":[{"lang":"eng","text":"In this paper we derive estimates for the Hessian of the logarithm (log-Hessian) for solutions to the heat equation. For initial data in the form of log-Lipschitz perturbation of strongly log-concave measures, the log-Hessian admits an explicit, uniform (in space) lower bound. This yields a new estimate for the Lipschitz constant of a transport map pushing forward the standard Gaussian to a measure in this class. On the other hand, we show that assuming only fast decay of the tails of the initial datum does not suffice to guarantee uniform log-Hessian upper bounds."}],"publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.1214/25-ECP717","month":"09","OA_type":"gold","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"}},{"status":"public","date_published":"2025-01-01T00:00:00Z","abstract":[{"lang":"eng","text":"Filtering-based probabilistic numerical solvers for ordinary differential equations (ODEs), also known as ODE filters, have been established as efficient methods for quantifying numerical uncertainty in the solution of ODEs. In practical applications, however, the underlying dynamical system often contains uncertain parameters, requiring the propagation of this model uncertainty to the ODE solution. In this paper, we demonstrate that ODE filters, despite their probabilistic nature, do not automatically solve this uncertainty propagation problem. To address this limitation, we present a novel approach that combines ODE filters with numerical quadrature to properly marginalize over uncertain parameters, while accounting for both parameter uncertainty and numerical solver uncertainty. Experiments across multiple dynamical systems demonstrate that the resulting uncertainty estimates closely match reference solutions. Notably, we show\r\nhow the numerical uncertainty from the ODE solver can help prevent overconfidence in the propagated uncertainty estimates, especially when using larger step sizes. Our results illustrate that probabilistic numerical methods can effectively quantify both numerical and parametric uncertainty in dynamical systems. "}],"publication_status":"published","ddc":["000"],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","main_file_link":[{"open_access":"1","url":"https://openreview.net/forum?id=sgPCP9jOlS"}],"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-sa/4.0/legalcode","name":"Creative Commons Attribution-ShareAlike 4.0 International Public License (CC BY-SA 4.0)","image":"/images/cc_by_sa.png","short":"CC BY-SA (4.0)"},"month":"01","OA_type":"green","oa":1,"language":[{"iso":"eng"}],"arxiv":1,"alternative_title":["PMLR"],"date_updated":"2025-11-10T08:33:11Z","oa_version":"Preprint","day":"01","year":"2025","publication":"Proceedings of the 1st International Conference on Probabilistic Numerics","external_id":{"arxiv":["2503.04684"]},"title":"Propagating model uncertainty through filtering-based probabilistic numerical ODE solvers","volume":271,"OA_place":"repository","department":[{"_id":"FrLo"}],"conference":{"name":"ProbNum: Conference on Probabilistic Numerics","location":"Sophia Antipolis, France","start_date":"2025-09-01","end_date":"2025-09-03"},"publication_identifier":{"eissn":["2640-3498"]},"acknowledgement":"NB gratefully acknowledge co-funding by the European Union (ERC, ANUBIS, 101123955. Views and opinions expressed are however those of the author(s) only and do not necessarily reflect those of the European Union or the European Research Council. Neither the European Union nor the granting authority can be held responsible for them). NB thanks the International\r\nMax Planck Research School for Intelligent Systems (IMPRS-IS) for their support.","date_created":"2025-11-02T23:01:35Z","article_processing_charge":"No","author":[{"first_name":"Dingling","id":"d3e02e50-48a8-11ee-8f62-c108061797fa","last_name":"Yao","full_name":"Yao, Dingling"},{"last_name":"Tronarp","first_name":"Filip","full_name":"Tronarp, Filip"},{"last_name":"Bosch","first_name":"Nathanael","full_name":"Bosch, Nathanael"}],"_id":"20592","citation":{"chicago":"Yao, Dingling, Filip Tronarp, and Nathanael Bosch. “Propagating Model Uncertainty through Filtering-Based Probabilistic Numerical ODE Solvers.” In Proceedings of the 1st International Conference on Probabilistic Numerics, Vol. 271. ML Research Press, 2025.","apa":"Yao, D., Tronarp, F., & Bosch, N. (2025). Propagating model uncertainty through filtering-based probabilistic numerical ODE solvers. In Proceedings of the 1st International Conference on Probabilistic Numerics (Vol. 271). Sophia Antipolis, France: ML Research Press.","short":"D. Yao, F. Tronarp, N. Bosch, in:, Proceedings of the 1st International Conference on Probabilistic Numerics, ML Research Press, 2025.","ama":"Yao D, Tronarp F, Bosch N. Propagating model uncertainty through filtering-based probabilistic numerical ODE solvers. In: Proceedings of the 1st International Conference on Probabilistic Numerics. Vol 271. ML Research Press; 2025.","ista":"Yao D, Tronarp F, Bosch N. 2025. Propagating model uncertainty through filtering-based probabilistic numerical ODE solvers. Proceedings of the 1st International Conference on Probabilistic Numerics. ProbNum: Conference on Probabilistic Numerics, PMLR, vol. 271.","ieee":"D. Yao, F. Tronarp, and N. Bosch, “Propagating model uncertainty through filtering-based probabilistic numerical ODE solvers,” in Proceedings of the 1st International Conference on Probabilistic Numerics, Sophia Antipolis, France, 2025, vol. 271.","mla":"Yao, Dingling, et al. “Propagating Model Uncertainty through Filtering-Based Probabilistic Numerical ODE Solvers.” Proceedings of the 1st International Conference on Probabilistic Numerics, vol. 271, ML Research Press, 2025."},"has_accepted_license":"1","quality_controlled":"1","scopus_import":"1","type":"conference","publisher":"ML Research Press","intvolume":" 271"},{"date_updated":"2025-12-01T15:11:44Z","oa_version":"Published Version","oa":1,"language":[{"iso":"eng"}],"day":"25","file":[{"date_updated":"2025-11-04T07:56:19Z","access_level":"open_access","creator":"dernst","relation":"main_file","content_type":"application/pdf","file_id":"20597","date_created":"2025-11-04T07:56:19Z","checksum":"368eb041c395a5155218f858947df419","file_name":"2025_ACSEnergyLetters_Dutta.pdf","file_size":9307654,"success":1}],"abstract":[{"text":"“Quasi-solid-state” conversion mechanisms using sparingly solvating electrolytes (SPSEs) bridge the gap between traditional solid–liquid–solid and solid-state sulfur conversion in lithium–sulfur (Li–S) batteries. Although these terms are commonly used, their precise distinctions and impacts on key performance metrics, such as rate capability, energy density, and capacity fading, remain poorly understood. In this work, we employ operando small- and wide-angle X-ray scattering alongside cryogenic transmission electron microscopy (cryo-TEM) to compare Li–S batteries in sparingly solvating and solvating ether-based electrolytes. We find that, unlike solvating electrolytes, SPSEs lead to an extended presence of lithium sulfide during cycling, coexisting with sulfur at a 50% state of charge and beyond. In the charged state, solid sulfur is present in its amorphous form inside the carbon black nanopores. These findings indicate that the limited solubility confines polysulfides in regions near the carbon surface, where these polysulfides enable conversion between the coexisting solid discharge and charge product.","lang":"eng"}],"publication_status":"published","ddc":["540"],"status":"public","date_published":"2025-10-25T00:00:00Z","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"month":"10","OA_type":"hybrid","doi":"10.1021/acsenergylett.5c02093","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"chicago":"Dutta, Pronoy, Jean Marc Von Mentlen, Soumyadip Mondal, Nikolaos Kostoglou, Bodo D. Wilts, Stefan Alexander Freunberger, Gregor A. Zickler, and Christian Prehal. “Bridging Solution and Solid-State Mechanism: Confined Quasi-Solid-State Conversion in Li–S Batteries.” ACS Energy Letters. American Chemical Society, 2025. https://doi.org/10.1021/acsenergylett.5c02093.","apa":"Dutta, P., Von Mentlen, J. M., Mondal, S., Kostoglou, N., Wilts, B. D., Freunberger, S. A., … Prehal, C. (2025). Bridging solution and solid-state mechanism: Confined quasi-solid-state conversion in Li–S batteries. ACS Energy Letters. American Chemical Society. https://doi.org/10.1021/acsenergylett.5c02093","short":"P. Dutta, J.M. Von Mentlen, S. Mondal, N. Kostoglou, B.D. Wilts, S.A. Freunberger, G.A. Zickler, C. Prehal, ACS Energy Letters 10 (2025) 5722–5732.","ama":"Dutta P, Von Mentlen JM, Mondal S, et al. Bridging solution and solid-state mechanism: Confined quasi-solid-state conversion in Li–S batteries. ACS Energy Letters. 2025;10:5722-5732. doi:10.1021/acsenergylett.5c02093","ieee":"P. Dutta et al., “Bridging solution and solid-state mechanism: Confined quasi-solid-state conversion in Li–S batteries,” ACS Energy Letters, vol. 10. American Chemical Society, pp. 5722–5732, 2025.","mla":"Dutta, Pronoy, et al. “Bridging Solution and Solid-State Mechanism: Confined Quasi-Solid-State Conversion in Li–S Batteries.” ACS Energy Letters, vol. 10, American Chemical Society, 2025, pp. 5722–32, doi:10.1021/acsenergylett.5c02093.","ista":"Dutta P, Von Mentlen JM, Mondal S, Kostoglou N, Wilts BD, Freunberger SA, Zickler GA, Prehal C. 2025. Bridging solution and solid-state mechanism: Confined quasi-solid-state conversion in Li–S batteries. ACS Energy Letters. 10, 5722–5732."},"has_accepted_license":"1","quality_controlled":"1","scopus_import":"1","author":[{"full_name":"Dutta, Pronoy","first_name":"Pronoy","last_name":"Dutta"},{"first_name":"Jean Marc","last_name":"Von Mentlen","full_name":"Von Mentlen, Jean Marc"},{"last_name":"Mondal","id":"d25d21ef-dc8d-11ea-abe3-ec4576307f48","first_name":"Soumyadip","full_name":"Mondal, Soumyadip"},{"last_name":"Kostoglou","first_name":"Nikolaos","full_name":"Kostoglou, Nikolaos"},{"full_name":"Wilts, Bodo D.","first_name":"Bodo D.","last_name":"Wilts"},{"full_name":"Freunberger, Stefan Alexander","last_name":"Freunberger","id":"A8CA28E6-CE23-11E9-AD2D-EC27E6697425","orcid":"0000-0003-2902-5319","first_name":"Stefan Alexander"},{"last_name":"Zickler","first_name":"Gregor A.","full_name":"Zickler, Gregor A."},{"last_name":"Prehal","first_name":"Christian","full_name":"Prehal, Christian"}],"file_date_updated":"2025-11-04T07:56:19Z","_id":"20593","PlanS_conform":"1","publisher":"American Chemical Society","intvolume":" 10","type":"journal_article","isi":1,"related_material":{"link":[{"relation":"software","url":" https://doi.org/10.5281/zenodo.17144229"}]},"OA_place":"publisher","page":"5722-5732","year":"2025","publication":"ACS Energy Letters","title":"Bridging solution and solid-state mechanism: Confined quasi-solid-state conversion in Li–S batteries","external_id":{"isi":["001600396000001"]},"article_type":"letter_note","volume":10,"publication_identifier":{"eissn":["2380-8195"]},"acknowledgement":"This work was funded by the European Union (ERC-2022-STG, SOLIDCON, 101078271). Views and opinions expressed are, however, those of the authors only and do not necessarily reflect those of the European Union or the European Research Council Executive Agency. Neither the European Union nor the granting authority can be held responsible for them. TEM measurements were carried out on a JEOL JEM F200 TEM equipped with an energy filter funded by the FFG (grant number 37120633). The authors thank Klara Neumayr, Ayca Senol Güngör, and Lorenz Gruber for valuable discussions and support with lab work. N.K. thanks Oskar Paris from Montanuniversität Leoben for providing access to the gas sorption analyzer.","date_created":"2025-11-02T23:01:35Z","article_processing_charge":"Yes (in subscription journal)","department":[{"_id":"StFr"}]},{"doi":"10.1002/adma.202506785","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","tmp":{"name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","short":"CC BY-NC-ND (4.0)","image":"/images/cc_by_nc_nd.png"},"OA_type":"hybrid","month":"10","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1002/adma.202506785"}],"date_published":"2025-10-22T00:00:00Z","status":"public","abstract":[{"lang":"eng","text":"(Scanning) transmission electron microscopy ((S)TEM) has significantly advanced materials science but faces challenges in correlating precise atomic structure information with the functional properties of devices due to its time-intensive nature. To address this, an analytical workflow is introduced for the holistic characterization, modelling, and simulation of device heterostructures. This workflow automates the experimental (S)TEM data analysis, providing an in-depth characterization of crystallographic information, 3D orientation, elemental composition, and strain distribution. It reduces a process that typically takes days for a trained human into an automatic routine solved in minutes. Utilizing a physics-guided artificial intelligence model, it generates representative descriptions of materials and samples. The workflow culminates in creating digital twins of systems limited with at least one axis of translational invariance –3D finite element and atomic models of millions of atoms–enabling simulations that provide crucial insights into device behavior in practical applications. Demonstrated with SiGe planar heterostructures for scalable spin qubits, the workflow links digital twins to theoretical properties, revealing how atomic structure impacts materials and functional properties such as spatially-resolved phononic or electronic characteristics, or (inverse) spin orbit lengths. The versatility of the workflow is demonstrated through its application to a wide array of materials systems, device configurations, and sample morphologies."}],"publication_status":"epub_ahead","ddc":["530"],"day":"22","oa":1,"language":[{"iso":"eng"}],"date_updated":"2025-12-01T15:12:53Z","oa_version":"Published Version","arxiv":1,"department":[{"_id":"GeKa"}],"date_created":"2025-11-02T23:01:35Z","acknowledgement":"ICN2 acknowledged funding from Generalitat de Catalunya 2021SGR00457, 2021SGR00997 and 2021SGR01519. The authors thank support from the project AMaDE (PID2023-149158OB-C43), funded by MCIN/ AEI/10.13039/501100011033/. This study was part of the Advanced Materials programme and was supported by MCIN with funding from European Union NextGenerationEU (PRTR-C17.I1) and by Generalitat de Catalunya (In-CAEM Project). The authors acknowledged support from CSIC Interdisciplinary Thematic Platform (PTI+) on Quantum Technologies (PTI-QTEP+). This research work had been funded by the European Commission – NextGenerationEU (Regulation EU 2020/2094), through CSIC's Quantum Technologies Platform (QTEP). ICN2 was supported by the Severo Ochoa program from Spanish MCIN / AEI (Grant No.: CEX2021-001214-S) and was funded by the CERCA Programme / Generalitat de Catalunya. Part of the present work had been performed in the framework of Universitat Autònoma de Barcelona Materials Science PhD program. I.P.H. acknowledged funding from AGAUR-FI scholarship (2023FI-00268) Joan Oró of the Secretariat of Universities of the Generalitat of Catalonia and the European SocialPlus Fund. M.B. acknowledged support from SUR Generalitat de Catalunya and the EU Social Fund; project ref. 2020 FI 00103. This study was supported by EU HORIZON INFRA TECH 2022 project IMPRESS (Ref.: 101094299). Authors acknowledged the use of instrumentation as well as the technical advice provided by the Joint Electron Microscopy Center at ALBA (JEMCA). ICN2 acknowledged funding from Grant IU16-014206 (METCAM-FIB) funded by the European Union through the European Regional Development Fund (ERDF), with the support of the Ministry of Research and Universities, Generalitat de Catalunya. ICN2 was a founding member of e-DREAM.[135] S.R. was also supported by MICIN with European funds NextGenerationEU (PRTRC17.I1) funded by Generalitat de Catalunya. P.O. acknowledged support from the EU MaX CoE (Grant No. 101093374), Grants No. PCI2022-134972-2 and No. PID2022-139776NB-C62 funded by the Spanish MCIN/AEI/10.13039/501100011033 and by the ERDF, A way of making Europe.The authors thank the Catalan Quantum Academy for support. The authors acknowledged Dámaso Torres for his support in designing the graphical material.","article_processing_charge":"Yes (in subscription journal)","publication_identifier":{"issn":["0935-9648"],"eissn":["1521-4095"]},"title":"Artificial intelligence-assisted workflow for transmission electron microscopy: From data analysis automation to materials knowledge unveiling","external_id":{"arxiv":["2411.01024"],"isi":["001597428400001"]},"article_type":"original","year":"2025","publication":"Advanced Materials","OA_place":"publisher","type":"journal_article","isi":1,"publisher":"Wiley","author":[{"last_name":"Botifoll","first_name":"Marc","full_name":"Botifoll, Marc"},{"full_name":"Pinto-Huguet, Ivan","last_name":"Pinto-Huguet","first_name":"Ivan"},{"full_name":"Rotunno, Enzo","first_name":"Enzo","last_name":"Rotunno"},{"full_name":"Galvani, Thomas","first_name":"Thomas","last_name":"Galvani"},{"last_name":"Coll","first_name":"Catalina","full_name":"Coll, Catalina"},{"first_name":"Payam Habibzadeh","last_name":"Kavkani","full_name":"Kavkani, Payam Habibzadeh"},{"first_name":"Maria Chiara","last_name":"Spadaro","full_name":"Spadaro, Maria Chiara"},{"first_name":"Yann Michel","last_name":"Niquet","full_name":"Niquet, Yann Michel"},{"full_name":"Eriksen, Martin Børstad","first_name":"Martin Børstad","last_name":"Eriksen"},{"full_name":"Martí-Sánchez, Sara","last_name":"Martí-Sánchez","first_name":"Sara"},{"full_name":"Katsaros, Georgios","orcid":"0000-0001-8342-202X","id":"38DB5788-F248-11E8-B48F-1D18A9856A87","last_name":"Katsaros","first_name":"Georgios"},{"last_name":"Scappucci","first_name":"Giordano","full_name":"Scappucci, Giordano"},{"last_name":"Krogstrup","first_name":"Peter","full_name":"Krogstrup, Peter"},{"last_name":"Isella","first_name":"Giovanni","full_name":"Isella, Giovanni"},{"first_name":"Andreu","last_name":"Cabot","full_name":"Cabot, Andreu"},{"first_name":"Gonzalo","last_name":"Merino","full_name":"Merino, Gonzalo"},{"first_name":"Pablo","last_name":"Ordejón","full_name":"Ordejón, Pablo"},{"last_name":"Roche","first_name":"Stephan","full_name":"Roche, Stephan"},{"first_name":"Vincenzo","last_name":"Grillo","full_name":"Grillo, Vincenzo"},{"first_name":"Jordi","last_name":"Arbiol","full_name":"Arbiol, Jordi"}],"_id":"20594","has_accepted_license":"1","article_number":"e06785","quality_controlled":"1","scopus_import":"1","citation":{"chicago":"Botifoll, Marc, Ivan Pinto-Huguet, Enzo Rotunno, Thomas Galvani, Catalina Coll, Payam Habibzadeh Kavkani, Maria Chiara Spadaro, et al. “Artificial Intelligence-Assisted Workflow for Transmission Electron Microscopy: From Data Analysis Automation to Materials Knowledge Unveiling.” Advanced Materials. Wiley, 2025. https://doi.org/10.1002/adma.202506785.","short":"M. Botifoll, I. Pinto-Huguet, E. Rotunno, T. Galvani, C. Coll, P.H. Kavkani, M.C. Spadaro, Y.M. Niquet, M.B. Eriksen, S. Martí-Sánchez, G. Katsaros, G. Scappucci, P. Krogstrup, G. Isella, A. Cabot, G. Merino, P. Ordejón, S. Roche, V. Grillo, J. Arbiol, Advanced Materials (2025).","apa":"Botifoll, M., Pinto-Huguet, I., Rotunno, E., Galvani, T., Coll, C., Kavkani, P. H., … Arbiol, J. (2025). Artificial intelligence-assisted workflow for transmission electron microscopy: From data analysis automation to materials knowledge unveiling. Advanced Materials. Wiley. https://doi.org/10.1002/adma.202506785","ama":"Botifoll M, Pinto-Huguet I, Rotunno E, et al. Artificial intelligence-assisted workflow for transmission electron microscopy: From data analysis automation to materials knowledge unveiling. Advanced Materials. 2025. doi:10.1002/adma.202506785","mla":"Botifoll, Marc, et al. “Artificial Intelligence-Assisted Workflow for Transmission Electron Microscopy: From Data Analysis Automation to Materials Knowledge Unveiling.” Advanced Materials, e06785, Wiley, 2025, doi:10.1002/adma.202506785.","ista":"Botifoll M, Pinto-Huguet I, Rotunno E, Galvani T, Coll C, Kavkani PH, Spadaro MC, Niquet YM, Eriksen MB, Martí-Sánchez S, Katsaros G, Scappucci G, Krogstrup P, Isella G, Cabot A, Merino G, Ordejón P, Roche S, Grillo V, Arbiol J. 2025. Artificial intelligence-assisted workflow for transmission electron microscopy: From data analysis automation to materials knowledge unveiling. Advanced Materials., e06785.","ieee":"M. Botifoll et al., “Artificial intelligence-assisted workflow for transmission electron microscopy: From data analysis automation to materials knowledge unveiling,” Advanced Materials. Wiley, 2025."}},{"type":"journal_article","isi":1,"publisher":"Institute of Mathematics","intvolume":" 220","author":[{"first_name":"Christian","last_name":"Elsholtz","full_name":"Elsholtz, Christian"},{"full_name":"Ruzsa, Imre Z.","first_name":"Imre Z.","last_name":"Ruzsa"},{"first_name":"Lena","orcid":"0009-0004-5360-0074","id":"50c57d72-32a8-11ee-aeea-d652094d2ccd","last_name":"Wurzinger","full_name":"Wurzinger, Lena"}],"_id":"20603","citation":{"chicago":"Elsholtz, Christian, Imre Z. Ruzsa, and Lena Wurzinger. “Sumset Growth in Progression-Free Sets.” Acta Arithmetica. Institute of Mathematics, 2025. https://doi.org/10.4064/aa250115-14-7.","apa":"Elsholtz, C., Ruzsa, I. Z., & Wurzinger, L. (2025). Sumset growth in progression-free sets. Acta Arithmetica. Institute of Mathematics. https://doi.org/10.4064/aa250115-14-7","short":"C. Elsholtz, I.Z. Ruzsa, L. Wurzinger, Acta Arithmetica 220 (2025) 289–303.","ama":"Elsholtz C, Ruzsa IZ, Wurzinger L. Sumset growth in progression-free sets. Acta Arithmetica. 2025;220:289-303. doi:10.4064/aa250115-14-7","mla":"Elsholtz, Christian, et al. “Sumset Growth in Progression-Free Sets.” Acta Arithmetica, vol. 220, Institute of Mathematics, 2025, pp. 289–303, doi:10.4064/aa250115-14-7.","ieee":"C. Elsholtz, I. Z. Ruzsa, and L. Wurzinger, “Sumset growth in progression-free sets,” Acta Arithmetica, vol. 220. Institute of Mathematics, pp. 289–303, 2025.","ista":"Elsholtz C, Ruzsa IZ, Wurzinger L. 2025. Sumset growth in progression-free sets. Acta Arithmetica. 220, 289–303."},"quality_controlled":"1","scopus_import":"1","department":[{"_id":"TiBr"}],"publication_identifier":{"eissn":["1730-6264"],"issn":["0065-1036"]},"date_created":"2025-11-04T14:33:16Z","acknowledgement":"The authors would like to thank the referee and Ilya Shkredov for comments on the manuscript.\r\nC. E. is supported by a joint FWF-ANR project ArithRand, grant numbers FWF I 4945-N and ANR-20-CE91-0006.\r\n","article_processing_charge":"No","year":"2025","publication":"Acta Arithmetica","external_id":{"isi":["001570716800001"]},"title":"Sumset growth in progression-free sets","article_type":"original","volume":220,"page":"289-303","corr_author":"1","day":"12","language":[{"iso":"eng"}],"oa_version":"None","date_updated":"2025-12-01T15:18:09Z","doi":"10.4064/aa250115-14-7","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","OA_type":"closed access","month":"09","status":"public","date_published":"2025-09-12T00:00:00Z","publication_status":"published","abstract":[{"lang":"eng","text":"We study the growth of sumsets A+B⊂S⊂G, where S does not contain an arithmetic progression of length 2k+1, and where G is a commutative group, in which every nonzero element has an order of at least 2k+1. More specifically, we show the following: if A,B⊂G are sets such that A+B does not contain an arithmetic progression of length 2k+1, then\r\n|A+B|≥|A|2k−13k−2|B|k3k−2.\r\nAs an application we derive upper bounds on the cardinality of the summands in sumsets A+B+C contained in the set of t-th powers, where t≥2 is an integer. In particular, we show that min(|A|,|B|,|C|)≪(logN)4/5 for t=2, and min(|A|,|B|,|C|)≪t(logN)1/2 for t≥3."}]},{"date_updated":"2026-02-10T13:55:07Z","oa_version":"Published Version","language":[{"iso":"eng"}],"oa":1,"day":"01","file":[{"relation":"main_file","content_type":"application/pdf","date_updated":"2026-01-05T13:39:13Z","access_level":"open_access","creator":"dernst","file_name":"2025_EmboJour_Kahlhofer.pdf","file_size":11044553,"success":1,"file_id":"20956","date_created":"2026-01-05T13:39:13Z","checksum":"e49e7cdfa37c13c665e60903055acc6b"}],"ddc":["570"],"publication_status":"published","abstract":[{"lang":"eng","text":"Entry into and exit from cellular quiescence require dynamic adjustments in nutrient acquisition, yet the mechanisms by which quiescent cells downregulate amino acid (AA) transport remain poorly understood. Here we show that cells entering quiescence selectively target plasma membrane-resident amino acid transporters for endocytosis and lysosomal degradation. This process matches amino acid uptake with reduced translational demand and promotes survival during extended periods of quiescence. Mechanistically, we identify the α-arrestin TXNIP as a key regulator of this metabolic adaptation, since it mediates the endocytosis of the SLC7A5-SLC3A2 (LAT1-4F2hc) AA transporter complex in response to reduced AKT signaling. To promote transporter ubiquitination, TXNIP interacts with NEDD4L and other HECT-type ubiquitin ligases. Loss of TXNIP disrupts this regulation, resulting in dysregulated amino acid uptake, sustained mTORC1 signaling, and ultimately cell death under prolonged quiescence. The characterization of a novel TXNIP loss-of-function variant in a patient with a severe metabolic disease further supports its role in nutrient homeostasis and human health. Together, these findings highlight TXNIP’s central role in controlling nutrient acquisition and metabolic plasticity with implications for quiescence biology and diseases."}],"date_published":"2025-12-01T00:00:00Z","status":"public","month":"12","OA_type":"gold","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","pmid":1,"doi":"10.1038/s44318-025-00608-9","scopus_import":"1","quality_controlled":"1","has_accepted_license":"1","citation":{"ista":"Kahlhofer J, Marchet N, Zubak K, Seifert B, Hotze M, Egger-Hörschinger A-S, Kucej L, Manzl C, Weyer Y, Weys S, Offterdinger M, Herzog S, Reiterer V, Volani C, Kwiatkowski M, Wortmann SB, Nemati S, Mayr JA, Zschocke J, Radlinger B, Thedieck K, Kremser L, Sarg B, Huber LA, Farhan H, de Araujo MEG, Kaser S, Scholl-Bürgi S, Karall D, Teis D. 2025. TXNIP mediates LAT1/SLC7A5 endocytosis to limit amino acid uptake in cells entering quiescence. The EMBO Journal. 44, 7119–7153.","mla":"Kahlhofer, Jennifer, et al. “TXNIP Mediates LAT1/SLC7A5 Endocytosis to Limit Amino Acid Uptake in Cells Entering Quiescence.” The EMBO Journal, vol. 44, Embo Press, 2025, pp. 7119–53, doi:10.1038/s44318-025-00608-9.","ieee":"J. Kahlhofer et al., “TXNIP mediates LAT1/SLC7A5 endocytosis to limit amino acid uptake in cells entering quiescence,” The EMBO Journal, vol. 44. Embo Press, pp. 7119–7153, 2025.","ama":"Kahlhofer J, Marchet N, Zubak K, et al. TXNIP mediates LAT1/SLC7A5 endocytosis to limit amino acid uptake in cells entering quiescence. The EMBO Journal. 2025;44:7119-7153. doi:10.1038/s44318-025-00608-9","apa":"Kahlhofer, J., Marchet, N., Zubak, K., Seifert, B., Hotze, M., Egger-Hörschinger, A.-S., … Teis, D. (2025). TXNIP mediates LAT1/SLC7A5 endocytosis to limit amino acid uptake in cells entering quiescence. The EMBO Journal. Embo Press. https://doi.org/10.1038/s44318-025-00608-9","short":"J. Kahlhofer, N. Marchet, K. Zubak, B. Seifert, M. Hotze, A.-S. Egger-Hörschinger, L. Kucej, C. Manzl, Y. Weyer, S. Weys, M. Offterdinger, S. Herzog, V. Reiterer, C. Volani, M. Kwiatkowski, S.B. Wortmann, S. Nemati, J.A. Mayr, J. Zschocke, B. Radlinger, K. Thedieck, L. Kremser, B. Sarg, L.A. Huber, H. Farhan, M.E.G. de Araujo, S. Kaser, S. Scholl-Bürgi, D. Karall, D. Teis, The EMBO Journal 44 (2025) 7119–7153.","chicago":"Kahlhofer, Jennifer, Nikolas Marchet, Kristian Zubak, Brigitta Seifert, Madlen Hotze, Anna-Sophia Egger-Hörschinger, Lucija Kucej, et al. “TXNIP Mediates LAT1/SLC7A5 Endocytosis to Limit Amino Acid Uptake in Cells Entering Quiescence.” The EMBO Journal. Embo Press, 2025. https://doi.org/10.1038/s44318-025-00608-9."},"file_date_updated":"2026-01-05T13:39:13Z","_id":"20604","author":[{"first_name":"Jennifer","last_name":"Kahlhofer","full_name":"Kahlhofer, Jennifer"},{"full_name":"Marchet, Nikolas","last_name":"Marchet","first_name":"Nikolas"},{"last_name":"Zubak","first_name":"Kristian","full_name":"Zubak, Kristian"},{"first_name":"Brigitta","last_name":"Seifert","full_name":"Seifert, Brigitta"},{"first_name":"Madlen","last_name":"Hotze","full_name":"Hotze, Madlen"},{"first_name":"Anna-Sophia","last_name":"Egger-Hörschinger","full_name":"Egger-Hörschinger, Anna-Sophia"},{"full_name":"Kucej, Lucija","first_name":"Lucija","last_name":"Kucej"},{"full_name":"Manzl, Claudia","first_name":"Claudia","last_name":"Manzl"},{"full_name":"Weyer, Yannick","first_name":"Yannick","last_name":"Weyer"},{"full_name":"Weys, Sabine","first_name":"Sabine","id":"caffa136-9669-11ed-9092-ceac12ac9c05","last_name":"Weys"},{"last_name":"Offterdinger","first_name":"Martin","full_name":"Offterdinger, Martin"},{"last_name":"Herzog","first_name":"Sebastian","full_name":"Herzog, Sebastian"},{"last_name":"Reiterer","first_name":"Veronika","full_name":"Reiterer, Veronika"},{"first_name":"Chiara","last_name":"Volani","full_name":"Volani, Chiara"},{"last_name":"Kwiatkowski","first_name":"Marcel","full_name":"Kwiatkowski, Marcel"},{"first_name":"Saskia B","last_name":"Wortmann","full_name":"Wortmann, Saskia B"},{"last_name":"Nemati","first_name":"Siamak","full_name":"Nemati, Siamak"},{"first_name":"Johannes A","last_name":"Mayr","full_name":"Mayr, Johannes A"},{"full_name":"Zschocke, Johannes","first_name":"Johannes","last_name":"Zschocke"},{"full_name":"Radlinger, Bernhard","first_name":"Bernhard","last_name":"Radlinger"},{"full_name":"Thedieck, Kathrin","last_name":"Thedieck","first_name":"Kathrin"},{"first_name":"Leopold","last_name":"Kremser","full_name":"Kremser, Leopold"},{"last_name":"Sarg","first_name":"Bettina","full_name":"Sarg, Bettina"},{"last_name":"Huber","first_name":"Lukas A","full_name":"Huber, Lukas A"},{"full_name":"Farhan, Hesso","first_name":"Hesso","last_name":"Farhan"},{"full_name":"de Araujo, Mariana E G","first_name":"Mariana E G","last_name":"de Araujo"},{"full_name":"Kaser, Susanne","last_name":"Kaser","first_name":"Susanne"},{"last_name":"Scholl-Bürgi","first_name":"Sabine","full_name":"Scholl-Bürgi, Sabine"},{"last_name":"Karall","first_name":"Daniela","full_name":"Karall, Daniela"},{"first_name":"David","last_name":"Teis","full_name":"Teis, David"}],"intvolume":" 44","publisher":"Embo Press","PlanS_conform":"1","isi":1,"DOAJ_listed":"1","type":"journal_article","page":"7119-7153","OA_place":"publisher","volume":44,"title":"TXNIP mediates LAT1/SLC7A5 endocytosis to limit amino acid uptake in cells entering quiescence","article_type":"original","external_id":{"isi":["001596177400001"],"pmid":["41116060"]},"publication":"The EMBO Journal","year":"2025","article_processing_charge":"Yes","acknowledgement":"We thank the patient and his family. We are grateful to Hemmo Meyer and Simona Polo for providing the YFP-tagged HECT-type ubiquitin ligases and to our protein core facility for excellent support. This research was funded in part by the Austrian Science Fund (FWF) (10.55776/P35874, 10.55776/P34907 to DT, 10.55776/P35832, 10.55776/P36600 to HF, 10.55776/P36925 to VR, 10.55776/P30196 to SH, 10.55776/FG20 to HF, BS, DT, LAH, KT and MA, 10.55776/DOC82 to DT, SK, LAH). JK is a recipient of a DOC Fellowship of the Austrian Academy of Sciences. KT acknowledges support from the DFG (German Research Foundation, project No TH 1358/3-2), the MESI-STRAT project (grant agreement No 754688) which has received funding from the European Union’s Horizon 2020 research and innovation programme, and from the European Union European Research Council (ERC AdG BEYOND STRESS, grant agreement No 101054429) which has received funding from the European Union’s Horizon Europe research and innovation programme. Views & opinions are those of the authors. For open access purposes, the author has applied a CC BY public copyright license to any author accepted manuscript version arising from this submission.","date_created":"2025-11-04T14:34:29Z","publication_identifier":{"eissn":["1460-2075"]}},{"ec_funded":1,"language":[{"iso":"eng"}],"oa_version":"None","alternative_title":["LNCS"],"date_updated":"2025-11-10T08:06:27Z","day":"02","status":"public","date_published":"2025-10-02T00:00:00Z","publication_status":"published","abstract":[{"text":"Markov decision processes (MDPs) are a fundamental model of decision making which exhibit non-deterministic choice as well as probabilistic uncertainty. Traditionally, verification assumes exact knowledge of the probabilities that govern the behaviour of an MDP. However, this assumption often is unrealistic, e.g. when modelling cyber-physical systems or biological processes. There, we can employ statistical model checking (SMC) to obtain an estimate of the MDP’s value (e.g. the maximal probability of reaching a goal state) that is close to the true value with high confidence (probably approximately correct). Model-based SMC algorithms sample the MDP and build a model of it by estimating all transition probabilities, essentially for every transition answering the question: “What are the odds?” However, so far the statistical methods employed by state-of-the-art SMC verification algorithms are quite naive or even compromise the correctness guarantees.\r\n\r\nOur first contribution is to survey, categorize, and analyse statistical methods, identifying those few that are most efficient and that provide suitable guarantees for the verification setting. Secondly, we propose improvements that exploit structural knowledge of the MDP. Both contributions generalize to many types of problem statements as they are largely independent of the setting. Moreover, our experimental evaluation shows that they lead to significant gains, reducing the number of samples that an SMC algorithm has to collect by up to two orders of magnitude.","lang":"eng"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.1007/978-3-032-05792-1_11","month":"10","_id":"20610","author":[{"full_name":"Meggendorfer, Tobias","id":"b21b0c15-30a2-11eb-80dc-f13ca25802e1","last_name":"Meggendorfer","orcid":"0000-0002-1712-2165","first_name":"Tobias"},{"last_name":"Weininger","id":"02ab0197-cc70-11ed-ab61-918e71f56881","orcid":"0000-0002-0163-2152","first_name":"Maximilian","full_name":"Weininger, Maximilian"},{"last_name":"Wienhöft","first_name":"Patrick","full_name":"Wienhöft, Patrick"}],"citation":{"ama":"Meggendorfer T, Weininger M, Wienhöft P. What are the odds? Improving statistical model checking of Markov decision processes. In: Second International Joint Conference on QEST+FORMATS. Vol 16143. Springer Nature; 2025:195-218. doi:10.1007/978-3-032-05792-1_11","ista":"Meggendorfer T, Weininger M, Wienhöft P. 2025. What are the odds? Improving statistical model checking of Markov decision processes. Second International Joint Conference on QEST+FORMATS. QEST-FORMATS: International Conference on Quantitative Evaluation of Systems and Formal Modeling and Analysis of Timed Systems, LNCS, vol. 16143, 195–218.","ieee":"T. Meggendorfer, M. Weininger, and P. Wienhöft, “What are the odds? Improving statistical model checking of Markov decision processes,” in Second International Joint Conference on QEST+FORMATS, Aarhus, Denmark, 2025, vol. 16143, pp. 195–218.","mla":"Meggendorfer, Tobias, et al. “What Are the Odds? Improving Statistical Model Checking of Markov Decision Processes.” Second International Joint Conference on QEST+FORMATS, vol. 16143, Springer Nature, 2025, pp. 195–218, doi:10.1007/978-3-032-05792-1_11.","chicago":"Meggendorfer, Tobias, Maximilian Weininger, and Patrick Wienhöft. “What Are the Odds? Improving Statistical Model Checking of Markov Decision Processes.” In Second International Joint Conference on QEST+FORMATS, 16143:195–218. Springer Nature, 2025. https://doi.org/10.1007/978-3-032-05792-1_11.","short":"T. Meggendorfer, M. Weininger, P. Wienhöft, in:, Second International Joint Conference on QEST+FORMATS, Springer Nature, 2025, pp. 195–218.","apa":"Meggendorfer, T., Weininger, M., & Wienhöft, P. (2025). What are the odds? Improving statistical model checking of Markov decision processes. In Second International Joint Conference on QEST+FORMATS (Vol. 16143, pp. 195–218). Aarhus, Denmark: Springer Nature. https://doi.org/10.1007/978-3-032-05792-1_11"},"quality_controlled":"1","scopus_import":"1","type":"conference","publisher":"Springer Nature","intvolume":" 16143","publication":"Second International Joint Conference on QEST+FORMATS","project":[{"grant_number":"101034413","call_identifier":"H2020","name":"IST-BRIDGE: International postdoctoral program","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c"}],"year":"2025","volume":16143,"title":"What are the odds? Improving statistical model checking of Markov decision processes","page":"195-218","department":[{"_id":"KrCh"}],"conference":{"end_date":"2025-08-28","start_date":"2025-08-26","location":"Aarhus, Denmark","name":"QEST-FORMATS: International Conference on Quantitative Evaluation of Systems and Formal Modeling and Analysis of Timed Systems"},"publication_identifier":{"isbn":["9783032057914"],"issn":["0302-9743"],"eissn":["1611-3349"]},"article_processing_charge":"No","acknowledgement":"This work was supported by the European Union’s Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie grant agreement No 10103441, the ERC Starting Grant DEUCE (101077178) and the DFG through the Cluster of Excellence EXC 2050/1 (CeTI, project ID 390696704, as part of Germany’s Excellence Strategy) and the DFG grant 389792660 as part of TRR 248 (see https://perspicuous-computing.science).","date_created":"2025-11-09T23:01:34Z"},{"day":"04","file":[{"file_id":"20629","date_created":"2025-11-10T14:10:12Z","checksum":"4d30ff82314e76fe411c8f8195bb6040","file_size":61708650,"file_name":"main_paper.pdf","success":1,"date_updated":"2025-11-10T14:10:12Z","access_level":"open_access","creator":"yichen","relation":"main_file","content_type":"application/pdf"},{"date_updated":"2025-11-10T14:10:27Z","creator":"yichen","access_level":"open_access","content_type":"application/pdf","relation":"supplementary_material","date_created":"2025-11-10T14:10:27Z","file_id":"20630","checksum":"f1b6df39487866044ca7ca899d044be7","file_size":6862285,"file_name":"paper_supplemental.pdf"},{"relation":"supplementary_material","content_type":"video/mp4","date_updated":"2025-11-10T14:10:44Z","access_level":"open_access","creator":"yichen","file_name":"main_video.mp4","file_size":164079303,"file_id":"20631","date_created":"2025-11-10T14:10:44Z","checksum":"04ec2a4866774673479cafe5b93d26bd"},{"checksum":"7495e8cbcf94eb49276b4730c5886914","date_created":"2025-11-10T14:10:53Z","file_id":"20632","file_name":"extra_video.mp4","file_size":72234678,"creator":"yichen","access_level":"open_access","date_updated":"2025-11-10T14:10:53Z","content_type":"video/mp4","relation":"supplementary_material"}],"license":"https://creativecommons.org/licenses/by-nd/4.0/","corr_author":"1","issue":"6","oa_version":"Published Version","date_updated":"2025-12-09T14:53:32Z","oa":1,"language":[{"iso":"eng"}],"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nd/4.0/legalcode","name":"Creative Commons Attribution-NoDerivatives 4.0 International (CC BY-ND 4.0)","image":"/image/cc_by_nd.png","short":"CC BY-ND (4.0)"},"OA_type":"hybrid","month":"12","doi":"10.1145/3763344","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","abstract":[{"lang":"eng","text":"The realistic simulation of sand, soil, powders, rubble piles, and large collections of rigid bodies is a common and important problem in the fields of computer graphics, computational physics, and engineering. Direct simulation of these individual bodies quickly becomes expensive, so we often approximate the entire group as a continuum material that can be more easily computed using tools for solving partial differential equations, like the material point method (MPM). In this paper, we present a method for automatically extracting continuum material properties from a collection of rigid\r\nbodies. We use numerical homogenization with periodic boundary conditions to simulate an effectively infinite number of rigid bodies in contact. We then record the effective stress-strain relationships from these simulations and convert them into elastic properties and yield criteria for the continuum simulations. Our experiments validate existing theoretical models like the Mohr-Coulomb yield surface by extracting material behaviors from a collection of spheres in contact. We further generalize these existing models to more exotic materials derived from diverse and non-convex shapes. We\r\nobserve complicated jamming behaviors from non-convex grains, and we introduce a new material model for materials with extremely high levels of internal friction and cohesion. We simulate these new continuum models using MPM with an improved return mapping technique. The end result is a complete system for turning an input rigid body simulation into an efficient continuum simulation with the same effective mechanical properties."}],"ddc":["531","006","621"],"status":"public","date_published":"2025-12-04T00:00:00Z","publisher":"Association for Computing Machinery","intvolume":" 44","type":"journal_article","citation":{"chicago":"Chen, Yi-Lu, Mickaël Ly, and Chris Wojtan. “Numerical Homogenization of Sand from Grain-Level Simulations.” ACM Transactions on Graphics. Association for Computing Machinery, 2025. https://doi.org/10.1145/3763344.","apa":"Chen, Y.-L., Ly, M., & Wojtan, C. (2025). Numerical homogenization of sand from grain-level simulations. ACM Transactions on Graphics. Hong Kong, China: Association for Computing Machinery. https://doi.org/10.1145/3763344","short":"Y.-L. Chen, M. Ly, C. Wojtan, ACM Transactions on Graphics 44 (2025).","ama":"Chen Y-L, Ly M, Wojtan C. Numerical homogenization of sand from grain-level simulations. ACM Transactions on Graphics. 2025;44(6). doi:10.1145/3763344","ista":"Chen Y-L, Ly M, Wojtan C. 2025. Numerical homogenization of sand from grain-level simulations. ACM Transactions on Graphics. 44(6), 220.","mla":"Chen, Yi-Lu, et al. “Numerical Homogenization of Sand from Grain-Level Simulations.” ACM Transactions on Graphics, vol. 44, no. 6, 220, Association for Computing Machinery, 2025, doi:10.1145/3763344.","ieee":"Y.-L. Chen, M. Ly, and C. Wojtan, “Numerical homogenization of sand from grain-level simulations,” ACM Transactions on Graphics, vol. 44, no. 6. Association for Computing Machinery, 2025."},"has_accepted_license":"1","quality_controlled":"1","article_number":"220","scopus_import":"1","author":[{"full_name":"Chen, Yi-Lu","orcid":"0009-0005-0723-0655","last_name":"Chen","id":"0b467602-dbcd-11ea-9d1d-ed480aa46b70","first_name":"Yi-Lu"},{"first_name":"Mickaël","last_name":"Ly","id":"6340d7f0-b48d-11eb-b10d-b7487e71d9f1","full_name":"Ly, Mickaël"},{"full_name":"Wojtan, Christopher J","orcid":"0000-0001-6646-5546","id":"3C61F1D2-F248-11E8-B48F-1D18A9856A87","last_name":"Wojtan","first_name":"Christopher J"}],"_id":"20628","file_date_updated":"2025-11-10T14:10:53Z","publication_identifier":{"eissn":["1557-7368"],"issn":["0730-0301"]},"date_created":"2025-11-10T14:12:06Z","acknowledgement":"We thank the anonymous reviewers for their helpful comments, the members of the Visual Computing Group at ISTA for their feedback and Gauthier Rousseau for the insightful discussions. This research was supported by the Scientific Service Units (SSU) of ISTA through resources provided by Scientific Computing and was funded in part by the European Union (ERC-2021-COG 101045083 CoDiNA). ","article_processing_charge":"Yes (via OA deal)","department":[{"_id":"GradSch"},{"_id":"ChWo"}],"conference":{"location":"Hong Kong, China","start_date":"2025-12-15","end_date":"2025-12-18","name":"SIGGRAPH Asia: Conference and Exhibition on Computer Graphics and Interactive Techniques in Asia"},"OA_place":"publisher","year":"2025","project":[{"_id":"34bc2376-11ca-11ed-8bc3-9a3b3961a088","name":"Computational Discovery of Numerical Algorithms for Animation and Simulation of Natural Phenomena","grant_number":"101045083"}],"publication":"ACM Transactions on Graphics","article_type":"original","title":"Numerical homogenization of sand from grain-level simulations","volume":44},{"pmid":1,"doi":"10.1073/pnas.2512274122","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","tmp":{"name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","short":"CC BY-NC-ND (4.0)","image":"/images/cc_by_nc_nd.png"},"OA_type":"hybrid","month":"09","date_published":"2025-09-23T00:00:00Z","status":"public","abstract":[{"lang":"eng","text":"Plants have evolved sophisticated mechanisms to adapt to environmental changes, with root gravitropism playing a pivotal role in nutrient and water acquisition. Our study reveals that SnRK2 kinases (SnRK2.2 and SnRK2.3) are critical regulators of root gravitropism through their direct phosphorylation of the auxin transporter PIN2 at S259. We demonstrate that SnRK2s-mediated phosphorylation modulates both the polar localization and transport activity of PIN2. Importantly, SnRK2s function antagonistically to the AGCVIII kinase PID, which phosphorylates PIN2 at a distinct site (S258), establishing a regulatory balance essential for adaptive root growth. Structural modeling and phosphorylation assays further suggest that SnRK2s-mediated phosphorylation at S259 sterically hinders access of PID to S258, providing a mechanistic basis for their antagonistic relationship. These findings uncover a novel regulatory mechanism, by which plants fine-tune root developmental programs to adapt to environmental stimuli, highlighting the evolutionary significance of multilayered kinase-mediated regulation in plant adaptation."}],"publication_status":"published","ddc":["580"],"file":[{"checksum":"38b723a909bf321d7ee537c9d064aa25","file_id":"20681","date_created":"2025-11-24T13:48:09Z","file_name":"2025_PNAS_Sheng.pdf","file_size":2667764,"success":1,"access_level":"open_access","creator":"dernst","date_updated":"2025-11-24T13:48:09Z","relation":"main_file","content_type":"application/pdf"}],"day":"23","oa":1,"language":[{"iso":"eng"}],"issue":"39","oa_version":"Published Version","date_updated":"2026-02-16T12:32:51Z","department":[{"_id":"JiFr"}],"acknowledgement":"This research was funded by Biological Breeding-National Science and Technology Major Project (2023ZD0407201), China Postdoctoral Science Foundation (2024M763575), China Agricultural University Fund (2025RC042), Chinese Universities Scientific Fund (2024RC031), and Austrian Science Fund (FWF; I 6123-B).","date_created":"2025-11-12T10:03:20Z","article_processing_charge":"Yes (in subscription journal)","publication_identifier":{"issn":["0027-8424"],"eissn":["1091-6490"]},"article_type":"original","title":"Antagonistic SnRK2 and PID kinases' action on auxin transport-mediated root gravitropism","external_id":{"pmid":["40986351"],"isi":["001589177800001"]},"volume":122,"year":"2025","project":[{"grant_number":"I06123","name":"Peptide receptors for auxin canalization in Arabidopsis","_id":"bd76d395-d553-11ed-ba76-f678c14f9033"}],"publication":"Proceedings of the National Academy of Sciences","page":"e2512274122","OA_place":"publisher","type":"journal_article","isi":1,"intvolume":" 122","publisher":"National Academy of Sciences","PlanS_conform":"1","author":[{"full_name":"Sheng, F","first_name":"F","last_name":"Sheng"},{"first_name":"Y","last_name":"Gao","full_name":"Gao, Y"},{"first_name":"Y","last_name":"Wang","full_name":"Wang, Y"},{"full_name":"Li, Y","first_name":"Y","last_name":"Li"},{"first_name":"JA","last_name":"Zhang","full_name":"Zhang, JA"},{"first_name":"Z","last_name":"Zhang","full_name":"Zhang, Z"},{"first_name":"X","last_name":"Qin","full_name":"Qin, X"},{"full_name":"Zhang, S","last_name":"Zhang","first_name":"S"},{"full_name":"Song, W","last_name":"Song","first_name":"W"},{"full_name":"Li, J","last_name":"Li","first_name":"J"},{"first_name":"Y","last_name":"Guo","full_name":"Guo, Y"},{"first_name":"Jiří","orcid":"0000-0002-8302-7596","id":"4159519E-F248-11E8-B48F-1D18A9856A87","last_name":"Friml","full_name":"Friml, Jiří"},{"full_name":"Gong, Z","last_name":"Gong","first_name":"Z"},{"full_name":"Zhang, Q","last_name":"Zhang","first_name":"Q"},{"last_name":"Zhang","first_name":"J","full_name":"Zhang, J"}],"file_date_updated":"2025-11-24T13:48:09Z","_id":"20635","has_accepted_license":"1","scopus_import":"1","quality_controlled":"1","citation":{"ama":"Sheng F, Gao Y, Wang Y, et al. Antagonistic SnRK2 and PID kinases’ action on auxin transport-mediated root gravitropism. Proceedings of the National Academy of Sciences. 2025;122(39):e2512274122. doi:10.1073/pnas.2512274122","ista":"Sheng F, Gao Y, Wang Y, Li Y, Zhang J, Zhang Z, Qin X, Zhang S, Song W, Li J, Guo Y, Friml J, Gong Z, Zhang Q, Zhang J. 2025. Antagonistic SnRK2 and PID kinases’ action on auxin transport-mediated root gravitropism. Proceedings of the National Academy of Sciences. 122(39), e2512274122.","ieee":"F. Sheng et al., “Antagonistic SnRK2 and PID kinases’ action on auxin transport-mediated root gravitropism,” Proceedings of the National Academy of Sciences, vol. 122, no. 39. National Academy of Sciences, p. e2512274122, 2025.","mla":"Sheng, F., et al. “Antagonistic SnRK2 and PID Kinases’ Action on Auxin Transport-Mediated Root Gravitropism.” Proceedings of the National Academy of Sciences, vol. 122, no. 39, National Academy of Sciences, 2025, p. e2512274122, doi:10.1073/pnas.2512274122.","chicago":"Sheng, F, Y Gao, Y Wang, Y Li, JA Zhang, Z Zhang, X Qin, et al. “Antagonistic SnRK2 and PID Kinases’ Action on Auxin Transport-Mediated Root Gravitropism.” Proceedings of the National Academy of Sciences. National Academy of Sciences, 2025. https://doi.org/10.1073/pnas.2512274122.","short":"F. Sheng, Y. Gao, Y. Wang, Y. Li, J. Zhang, Z. Zhang, X. Qin, S. Zhang, W. Song, J. Li, Y. Guo, J. Friml, Z. Gong, Q. Zhang, J. Zhang, Proceedings of the National Academy of Sciences 122 (2025) e2512274122.","apa":"Sheng, F., Gao, Y., Wang, Y., Li, Y., Zhang, J., Zhang, Z., … Zhang, J. (2025). Antagonistic SnRK2 and PID kinases’ action on auxin transport-mediated root gravitropism. Proceedings of the National Academy of Sciences. National Academy of Sciences. https://doi.org/10.1073/pnas.2512274122"}},{"type":"journal_article","publisher":"Elsevier","_id":"20636","author":[{"full_name":"Huang, R","last_name":"Huang","first_name":"R"},{"first_name":"J","last_name":"Wang","full_name":"Wang, J"},{"first_name":"M","last_name":"Chang","full_name":"Chang, M"},{"full_name":"Tang, W","last_name":"Tang","first_name":"W"},{"last_name":"Yu","first_name":"Y","full_name":"Yu, Y"},{"first_name":"Y","last_name":"Zhang","full_name":"Zhang, Y"},{"full_name":"Peng, Y","first_name":"Y","last_name":"Peng"},{"full_name":"Wang, Y","first_name":"Y","last_name":"Wang"},{"full_name":"Guo, Y","first_name":"Y","last_name":"Guo"},{"full_name":"Lu, T","last_name":"Lu","first_name":"T"},{"first_name":"Y","last_name":"Cao","full_name":"Cao, Y"},{"full_name":"Zhou, Y","first_name":"Y","last_name":"Zhou"},{"last_name":"Zhang","first_name":"Q","full_name":"Zhang, Q"},{"full_name":"Huang, Y","first_name":"Y","last_name":"Huang"},{"full_name":"Wu, A","first_name":"A","last_name":"Wu"},{"first_name":"L","last_name":"Ren","full_name":"Ren, L"},{"full_name":"Gallei, Michelle C","first_name":"Michelle C","id":"35A03822-F248-11E8-B48F-1D18A9856A87","last_name":"Gallei","orcid":"0000-0003-1286-7368"},{"first_name":"J","last_name":"Dong","full_name":"Dong, J"},{"full_name":"Chen, H","last_name":"Chen","first_name":"H"},{"full_name":"He, J","first_name":"J","last_name":"He"},{"first_name":"M","last_name":"Wen","full_name":"Wen, M"},{"first_name":"Jiří","last_name":"Friml","id":"4159519E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8302-7596","full_name":"Friml, Jiří"},{"full_name":"Sun, L","first_name":"L","last_name":"Sun"},{"full_name":"Xiong, Y","first_name":"Y","last_name":"Xiong"},{"full_name":"Yang, Z","first_name":"Z","last_name":"Yang"},{"first_name":"T","last_name":"Xu","full_name":"Xu, T"}],"scopus_import":"1","quality_controlled":"1","citation":{"ama":"Huang R, Wang J, Chang M, et al. TMK-PIN1 drives a short self-organizing circuit for auxin export and signaling in Arabidopsis. Developmental Cell. 2025:S1534-5807(25)00569-6. doi:10.1016/j.devcel.2025.09.009","ieee":"R. Huang et al., “TMK-PIN1 drives a short self-organizing circuit for auxin export and signaling in Arabidopsis,” Developmental Cell. Elsevier, pp. S1534-5807(25)00569–6, 2025.","ista":"Huang R, Wang J, Chang M, Tang W, Yu Y, Zhang Y, Peng Y, Wang Y, Guo Y, Lu T, Cao Y, Zhou Y, Zhang Q, Huang Y, Wu A, Ren L, Gallei MC, Dong J, Chen H, He J, Wen M, Friml J, Sun L, Xiong Y, Yang Z, Xu T. 2025. TMK-PIN1 drives a short self-organizing circuit for auxin export and signaling in Arabidopsis. Developmental Cell., S1534-5807(25)00569–6.","mla":"Huang, R., et al. “TMK-PIN1 Drives a Short Self-Organizing Circuit for Auxin Export and Signaling in Arabidopsis.” Developmental Cell, Elsevier, 2025, pp. S1534-5807(25)00569-6, doi:10.1016/j.devcel.2025.09.009.","chicago":"Huang, R, J Wang, M Chang, W Tang, Y Yu, Y Zhang, Y Peng, et al. “TMK-PIN1 Drives a Short Self-Organizing Circuit for Auxin Export and Signaling in Arabidopsis.” Developmental Cell. Elsevier, 2025. https://doi.org/10.1016/j.devcel.2025.09.009.","apa":"Huang, R., Wang, J., Chang, M., Tang, W., Yu, Y., Zhang, Y., … Xu, T. (2025). TMK-PIN1 drives a short self-organizing circuit for auxin export and signaling in Arabidopsis. Developmental Cell. Elsevier. https://doi.org/10.1016/j.devcel.2025.09.009","short":"R. Huang, J. Wang, M. Chang, W. Tang, Y. Yu, Y. Zhang, Y. Peng, Y. Wang, Y. Guo, T. Lu, Y. Cao, Y. Zhou, Q. Zhang, Y. Huang, A. Wu, L. Ren, M.C. Gallei, J. Dong, H. Chen, J. He, M. Wen, J. Friml, L. Sun, Y. Xiong, Z. Yang, T. Xu, Developmental Cell (2025) S1534-5807(25)00569–6."},"department":[{"_id":"JiFr"}],"article_processing_charge":"No","date_created":"2025-11-12T10:03:39Z","acknowledgement":"We thank Lukáš Fiedler for helping with the writing. This work was supported by the National Key Research and Development Program of China (2023YFA0913500) to T.X., R.H., Y.Y., Y.X., and M.W. and by the National Natural Science Foundation of China grants to T.X. (32130010), Z.Y. (3241101698), and R.H. (32070309 and 32470276) and startup funds from the Fujian Agriculture and Forestry University and the Shanghai Plant Stress Biology Center, Chinese Academy of Sciences to T.X.","publication_identifier":{"issn":["1534-5807"],"eissn":["1878-1551"]},"article_type":"original","title":"TMK-PIN1 drives a short self-organizing circuit for auxin export and signaling in Arabidopsis","external_id":{"pmid":["41043435"]},"publication":"Developmental Cell","year":"2025","page":"S1534-5807(25)00569-6","day":"02","language":[{"iso":"eng"}],"date_updated":"2025-11-24T13:43:08Z","oa_version":"None","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.1016/j.devcel.2025.09.009","pmid":1,"month":"10","OA_type":"closed access","date_published":"2025-10-02T00:00:00Z","status":"public","abstract":[{"lang":"eng","text":"The versatile and pivotal roles of the phytohormone auxin in regulating plant growth and development are typically linked to its directional transport, relying on the polarized PIN-FORMED (PIN) auxin exporters at the plasma membrane (PM). For decades, auxin has been proposed to promote PIN polarization, generating self-regulatory feedback mediating much of plant development, but mechanistic insight into this regulation is lacking. Here, we uncover an auxin-induced protein complex at the PM, containing auxin co-receptors transmembrane kinases (TMKs) and PIN1 auxin exporter, as the core machinery that underlies this feedback regulation. Auxin promotes PIN1 phosphorylation by TMKs, modulating PIN1 polarization and transport activity. We also provide evidence that PIN1-exported extracellular auxin is crucial for TMK activation and cell elongation, thus forming the simplest two-element self-regulatory feedback circuit. Thus, these findings offer direct mechanistic insights into a potential self-organizing circuit for auxin signaling and transport to ensure proper plant development in Arabidopsis."}],"publication_status":"epub_ahead"},{"publisher":"Institute of Science and Technology Austria","type":"research_data","citation":{"chicago":"Becker, Lea Marie, and Paul Schanda. “Data for ‘Aromatic Ring Flips Reveal Reshaping of Protein Dynamics in Crystals and Complexes.’” Institute of Science and Technology Austria, 2025. https://doi.org/10.15479/AT-ISTA-20641.","short":"L.M. Becker, P. Schanda, (2025).","apa":"Becker, L. M., & Schanda, P. (2025). Data for “Aromatic Ring Flips Reveal Reshaping of Protein Dynamics in Crystals and Complexes.” Institute of Science and Technology Austria. https://doi.org/10.15479/AT-ISTA-20641","ama":"Becker LM, Schanda P. Data for “Aromatic Ring Flips Reveal Reshaping of Protein Dynamics in Crystals and Complexes.” 2025. doi:10.15479/AT-ISTA-20641","ista":"Becker LM, Schanda P. 2025. Data for ‘Aromatic Ring Flips Reveal Reshaping of Protein Dynamics in Crystals and Complexes’, Institute of Science and Technology Austria, 10.15479/AT-ISTA-20641.","ieee":"L. M. Becker and P. Schanda, “Data for ‘Aromatic Ring Flips Reveal Reshaping of Protein Dynamics in Crystals and Complexes.’” Institute of Science and Technology Austria, 2025.","mla":"Becker, Lea Marie, and Paul Schanda. Data for “Aromatic Ring Flips Reveal Reshaping of Protein Dynamics in Crystals and Complexes.” Institute of Science and Technology Austria, 2025, doi:10.15479/AT-ISTA-20641."},"has_accepted_license":"1","author":[{"full_name":"Becker, Lea Marie","first_name":"Lea Marie","id":"36336939-eb97-11eb-a6c2-c83f1214ca79","last_name":"Becker","orcid":"0000-0002-6401-5151"},{"full_name":"Schanda, Paul","first_name":"Paul","id":"7B541462-FAF6-11E9-A490-E8DFE5697425","last_name":"Schanda","orcid":"0000-0002-9350-7606"}],"_id":"20641","file_date_updated":"2026-02-17T10:16:57Z","acknowledged_ssus":[{"_id":"NMR"},{"_id":"LifeSc"}],"contributor":[{"first_name":"Haohao ","last_name":"Fu","contributor_type":"researcher"},{"first_name":"Benjamin","id":"71cda2f3-e604-11ee-a1df-da10587eda3f","last_name":"Tatman","contributor_type":"researcher"},{"last_name":"Dreydoppel","first_name":"Matthias","contributor_type":"researcher"},{"contributor_type":"researcher","first_name":"Anna","id":"9fb2a840-89e1-11ee-a8b7-cc5c7ba62471","last_name":"Kapitonova"},{"orcid":"0000-0001-7597-043X","id":"302BADF6-85FC-11EA-9E3B-B9493DDC885E","last_name":"Balazs","first_name":"Daniel","contributor_type":"researcher"},{"first_name":"Ulrich","last_name":"Weininger","contributor_type":"researcher"},{"contributor_type":"researcher","last_name":"Engilberge","first_name":"Sylvain"},{"contributor_type":"researcher","last_name":"Chipot","first_name":"Christophe"}],"acknowledgement":"We thank Nikolai R. Skrynnikov and Olga O. Lebedenko (St. Petersburg) for insightful discussions and for performing exploratory MD simulations. We are grateful to Tobias Schubeis (Lyon) for advice with GB1 crystallization, and Rebecca Schmid for initial crystallization trials.\r\nWe thank Sebastian Falkner for assistance with constructing the structural model of the IgG:GB1 complex.\r\nThis research was supported by the Scientific Service Units (SSU) of Institute of Science and Technology Austria (ISTA) through resources provided by the Nuclear Magnetic Resonance and the Lab Support Facilities. We thank Petra Rovó and Margarita Valhondo Falcón for excellent support of the NMR facility.\r\nLea M. Becker is recipient of a DOC fellowship of the Austrian Academy of Sciences at the Institute of Science and Technology Austria (grant no. PR10660EAW01). Christophe Chipot acknowledges the European Research Council (grant project 101097272 ``MilliInMicro'') and the Métropole du Grand Nancy (grant project ``ARC''). BM07-FIP2 is supported by the French ANR PIA3 (France 2030) EquipEx+ project MAGNIFIX under grant agreement ANR-21-ESRE-0011.","date_created":"2025-11-13T09:29:58Z","article_processing_charge":"No","department":[{"_id":"GradSch"},{"_id":"PaSc"}],"related_material":{"record":[{"status":"public","id":"21145","relation":"later_version"}]},"year":"2025","project":[{"name":"Exploring protein dynamics by solid-state MAS NMR through specific labeling approaches","_id":"7be609c4-9f16-11ee-852c-85015ce2b9b0","grant_number":"26777"}],"title":"Data for \"Aromatic Ring Flips Reveal Reshaping of Protein Dynamics in Crystals and Complexes\"","day":"18","file":[{"relation":"main_file","content_type":"application/zip","access_level":"open_access","creator":"lbecker","date_updated":"2026-02-17T10:16:57Z","file_name":"Research_Data.zip","file_size":1806589513,"checksum":"a73a0550c644957e7f62241e239d3a1d","file_id":"20643","date_created":"2025-11-13T09:38:35Z"},{"date_updated":"2026-02-17T10:16:57Z","access_level":"open_access","creator":"lbecker","relation":"table_of_contents","content_type":"application/pdf","file_id":"20652","date_created":"2025-11-17T11:54:17Z","checksum":"7176b257f753c213a0460ee06f802363","file_size":191376,"file_name":"README.pdf"}],"corr_author":"1","oa_version":"None","date_updated":"2026-02-18T10:04:45Z","oa":1,"tmp":{"name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","short":"CC BY-NC (4.0)","image":"/images/cc_by_nc.png"},"OA_type":"free access","month":"11","doi":"10.15479/AT-ISTA-20641","user_id":"68b8ca59-c5b3-11ee-8790-cd641c68093d","abstract":[{"text":"Protein conformational energy landscapes are shaped not only by intramolecular interactions but also by their environment. In protein crystals and protein-protein complexes, intermolecular contacts alter this energy landscape, but the exact nature of this alteration is difficult to decipher. Understanding how the crystal lattice affects protein dynamics is crucial for crystallography-based studies of motion, yet its influence on collective motions remains unclear. Aromatic ring flips in the hydrophobic core represent sensitive probes of such dynamics. Here, we compare the kinetics of aromatic ring flips in the protein GB1 in crystals, in complex with its binding partner IgG, and in solution, combining advanced isotope labeling with quantitative NMR methods. We show that rings in the core flip nearly a thousand times less frequently in crystals than in solution. Enhanced-sampling molecular dynamics simulations, based on a new crystal structure, reproduce these elevated barriers and reveal how the crystal restrains motions. ","lang":"eng"}],"ddc":["572"],"status":"public","date_published":"2025-11-18T00:00:00Z"},{"day":"26","corr_author":"1","arxiv":1,"oa_version":"Preprint","alternative_title":["LNCS"],"date_updated":"2025-11-24T13:11:10Z","ec_funded":1,"oa":1,"language":[{"iso":"eng"}],"main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2408.03796"}],"month":"10","OA_type":"green","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.1007/978-3-032-08707-2_19","abstract":[{"text":"Polynomial quantified entailments with existentially and universally quantified variables arise in many problems of verification and program analysis. We present PolyQEnt which is a tool for solving polynomial quantified entailments in which variables on both sides of the implication are real valued or unbounded integers. Our tool provides a unified framework for polynomial quantified entailment problems that arise in several papers in the literature. Our experimental evaluation over a wide range of benchmarks shows the applicability of the tool as well as its benefits as opposed to simply using existing SMT solvers to solve such constraints.","lang":"eng"}],"publication_status":"published","status":"public","date_published":"2025-10-26T00:00:00Z","publisher":"Springer Nature","intvolume":" 16145","type":"conference","citation":{"ama":"Chatterjee K, Goharshady AK, Goharshady E, et al. PolyQEnt: A polynomial quantified entailment solver. In: 23rd International Symposium on Automated Technology for Verification and Analysis. Vol 16145. Springer Nature; 2025:411-424. doi:10.1007/978-3-032-08707-2_19","mla":"Chatterjee, Krishnendu, et al. “PolyQEnt: A Polynomial Quantified Entailment Solver.” 23rd International Symposium on Automated Technology for Verification and Analysis, vol. 16145, Springer Nature, 2025, pp. 411–24, doi:10.1007/978-3-032-08707-2_19.","ista":"Chatterjee K, Goharshady AK, Goharshady E, Karrabi M, Saadat M, Seeliger M, Zikelic D. 2025. PolyQEnt: A polynomial quantified entailment solver. 23rd International Symposium on Automated Technology for Verification and Analysis. ATVA: Automated Technology for Verification and Analysis, LNCS, vol. 16145, 411–424.","ieee":"K. Chatterjee et al., “PolyQEnt: A polynomial quantified entailment solver,” in 23rd International Symposium on Automated Technology for Verification and Analysis, Bengaluru, India, 2025, vol. 16145, pp. 411–424.","chicago":"Chatterjee, Krishnendu, Amir Kafshdar Goharshady, Ehsan Goharshady, Mehrdad Karrabi, Milad Saadat, Maximilian Seeliger, and Dorde Zikelic. “PolyQEnt: A Polynomial Quantified Entailment Solver.” In 23rd International Symposium on Automated Technology for Verification and Analysis, 16145:411–24. Springer Nature, 2025. https://doi.org/10.1007/978-3-032-08707-2_19.","short":"K. Chatterjee, A.K. Goharshady, E. Goharshady, M. Karrabi, M. Saadat, M. Seeliger, D. Zikelic, in:, 23rd International Symposium on Automated Technology for Verification and Analysis, Springer Nature, 2025, pp. 411–424.","apa":"Chatterjee, K., Goharshady, A. K., Goharshady, E., Karrabi, M., Saadat, M., Seeliger, M., & Zikelic, D. (2025). PolyQEnt: A polynomial quantified entailment solver. In 23rd International Symposium on Automated Technology for Verification and Analysis (Vol. 16145, pp. 411–424). Bengaluru, India: Springer Nature. https://doi.org/10.1007/978-3-032-08707-2_19"},"scopus_import":"1","quality_controlled":"1","_id":"20648","author":[{"first_name":"Krishnendu","orcid":"0000-0002-4561-241X","last_name":"Chatterjee","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","full_name":"Chatterjee, Krishnendu"},{"full_name":"Goharshady, Amir Kafshdar","first_name":"Amir Kafshdar","id":"391365CE-F248-11E8-B48F-1D18A9856A87","last_name":"Goharshady","orcid":"0000-0003-1702-6584"},{"full_name":"Kafshdar Goharshadi, Ehsan","first_name":"Ehsan","id":"103b4fa0-896a-11ed-bdf8-87b697bef40d","last_name":"Kafshdar Goharshadi","orcid":"0000-0002-8595-0587"},{"first_name":"Mehrdad","last_name":"Karrabi","id":"67638922-f394-11eb-9cf6-f20423e08757","orcid":"0009-0007-5253-9170","full_name":"Karrabi, Mehrdad"},{"full_name":"Saadat, Milad","first_name":"Milad","last_name":"Saadat"},{"full_name":"Seeliger, Maximilian","first_name":"Maximilian","last_name":"Seeliger"},{"full_name":"Zikelic, Dorde","last_name":"Zikelic","id":"294AA7A6-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4681-1699","first_name":"Dorde"}],"publication_identifier":{"eissn":["1611-3349"],"issn":["0302-9743"],"isbn":["9783032087065"]},"article_processing_charge":"No","date_created":"2025-11-16T23:01:24Z","acknowledgement":"This work was supported by the following grants: ERC CoG 863818 (ForM-SMArt), Austrian Science Fund (FWF) 10.55776/COE12, ERC StG 101222524 (SPES), the Ethereum Foundation Research Grant FY24-1793, and the Singapore Ministry of Education (MOE) Academic Research Fund (AcRF) Tier 1 grant (Project ID:22-SISSMU-100).","department":[{"_id":"KrCh"}],"conference":{"location":"Bengaluru, India","start_date":"2025-10-27","end_date":"2025-10-31","name":"ATVA: Automated Technology for Verification and Analysis"},"page":"411-424","OA_place":"repository","project":[{"name":"Formal Methods for Stochastic Models: Algorithms and Applications","_id":"0599E47C-7A3F-11EA-A408-12923DDC885E","grant_number":"863818","call_identifier":"H2020"}],"publication":"23rd International Symposium on Automated Technology for Verification and Analysis","year":"2025","volume":16145,"title":"PolyQEnt: A polynomial quantified entailment solver","external_id":{"arxiv":["2408.03796"]}},{"publication":"The Astrophysical Journal Letters","year":"2025","volume":993,"title":"Escape fractions from unattenuated Lyα emitters around luminous z > 6 quasars","article_type":"original","external_id":{"arxiv":["2507.05381"],"isi":["001600890100001"]},"OA_place":"publisher","department":[{"_id":"JoMa"}],"publication_identifier":{"eissn":["2041-8213"],"issn":["2041-8205"]},"article_processing_charge":"Yes","acknowledgement":"We thank the referee for valuable comments. This work is based on observations made with the NASA/ESA/CSA James Webb Space Telescope. The data were obtained from the Mikulski Archive for Space Telescopes at the Space Telescope Science Institute, which is operated by the Association of Universities for Research in Astronomy, Inc., under NASA contract NAS 5-03127 for JWST. These observations are associated with program ID #3117 and #4713. Support for\r\nthis work was provided by NASA through the NASA Hubble Fellowship grant HST-HF2-51515.001-A awarded by the Space Telescope Science Institute, which is operated by the\r\nAssociation of Universities for Research in Astronomy, Incorporated, under NASA contract NAS5-26555.","date_created":"2025-11-16T23:01:24Z","file_date_updated":"2025-11-24T13:18:34Z","_id":"20649","author":[{"first_name":"Minghao","last_name":"Yue","full_name":"Yue, Minghao"},{"first_name":"Anna Christina","last_name":"Eilers","full_name":"Eilers, Anna Christina"},{"id":"7439a258-f3c0-11ec-9501-9df22fe06720","last_name":"Matthee","orcid":"0000-0003-2871-127X","first_name":"Jorryt J","full_name":"Matthee, Jorryt J"},{"full_name":"Naidu, Rohan P.","first_name":"Rohan P.","last_name":"Naidu"},{"full_name":"Bordoloi, Rongmon","first_name":"Rongmon","last_name":"Bordoloi"},{"last_name":"Davies","first_name":"Frederick B.","full_name":"Davies, Frederick B."},{"full_name":"Hennawi, Joseph F.","first_name":"Joseph F.","last_name":"Hennawi"},{"last_name":"Kashino","first_name":"Daichi","full_name":"Kashino, Daichi"},{"full_name":"Mackenzie, Ruari","last_name":"Mackenzie","first_name":"Ruari"},{"first_name":"Robert A.","last_name":"Simcoe","full_name":"Simcoe, Robert A."}],"citation":{"apa":"Yue, M., Eilers, A. C., Matthee, J. J., Naidu, R. P., Bordoloi, R., Davies, F. B., … Simcoe, R. A. (2025). Escape fractions from unattenuated Lyα emitters around luminous z > 6 quasars. The Astrophysical Journal Letters. IOP Publishing. https://doi.org/10.3847/2041-8213/ae0e0e","short":"M. Yue, A.C. Eilers, J.J. Matthee, R.P. Naidu, R. Bordoloi, F.B. Davies, J.F. Hennawi, D. Kashino, R. Mackenzie, R.A. Simcoe, The Astrophysical Journal Letters 993 (2025).","chicago":"Yue, Minghao, Anna Christina Eilers, Jorryt J Matthee, Rohan P. Naidu, Rongmon Bordoloi, Frederick B. Davies, Joseph F. Hennawi, Daichi Kashino, Ruari Mackenzie, and Robert A. Simcoe. “Escape Fractions from Unattenuated Lyα Emitters around Luminous z > 6 Quasars.” The Astrophysical Journal Letters. IOP Publishing, 2025. https://doi.org/10.3847/2041-8213/ae0e0e.","ista":"Yue M, Eilers AC, Matthee JJ, Naidu RP, Bordoloi R, Davies FB, Hennawi JF, Kashino D, Mackenzie R, Simcoe RA. 2025. Escape fractions from unattenuated Lyα emitters around luminous z > 6 quasars. The Astrophysical Journal Letters. 993(1), L12.","mla":"Yue, Minghao, et al. “Escape Fractions from Unattenuated Lyα Emitters around Luminous z > 6 Quasars.” The Astrophysical Journal Letters, vol. 993, no. 1, L12, IOP Publishing, 2025, doi:10.3847/2041-8213/ae0e0e.","ieee":"M. Yue et al., “Escape fractions from unattenuated Lyα emitters around luminous z > 6 quasars,” The Astrophysical Journal Letters, vol. 993, no. 1. IOP Publishing, 2025.","ama":"Yue M, Eilers AC, Matthee JJ, et al. Escape fractions from unattenuated Lyα emitters around luminous z > 6 quasars. The Astrophysical Journal Letters. 2025;993(1). doi:10.3847/2041-8213/ae0e0e"},"article_number":"L12","quality_controlled":"1","scopus_import":"1","has_accepted_license":"1","isi":1,"type":"journal_article","DOAJ_listed":"1","PlanS_conform":"1","publisher":"IOP Publishing","intvolume":" 993","status":"public","date_published":"2025-11-01T00:00:00Z","ddc":["520"],"abstract":[{"lang":"eng","text":"Ionized proximity zones around luminous quasars provide a unique laboratory to characterize the Lyα emission lines from z > 6 galaxies without significant attenuation from the intergalactic medium (IGM). However, Lyα line measurements for galaxies within high-redshift quasars’ proximity zones have been rare so far. Here we present deep spectroscopic observations obtained with the NIRSpec/Micro-Shutter Assembly (MSA) instrument on the James Webb Space Telescope of galaxies in two z > 6 quasar fields. We measure the Lyα line fluxes for 50 galaxies at 6 < z < 7 with UV absolute magnitude M UV < −19 (median M UV = −19.97), among which 15 are located near the luminous quasars, i.e., within Δv < 2500 km s−1. We find that galaxies near the quasars show significant flux blueward of the systemic Lyα wavelength, and have higher Lyα equivalent width compared to galaxies at similar redshifts that are not located within the quasars’ environment. Our result indicates little or no redshift evolution for the Lyα emitter fraction from z ∼ 6.4 to z ∼ 5. Leveraging the low IGM opacity in the quasars’ vicinity, we evaluate the Lyα escape fraction (f esc Ly α) of high-redshift galaxies. Our analysis suggests that galaxies at 〈z〉 ≈ 6.4 have an average f esc Ly α = 0.14 ± 0.04. This value is consistent with reionization models where the Lyman continuum escape fraction is low ( fescLyC ≲ 0.1 ) for luminous galaxies, and where the most luminous galaxies have only a minor contribution to the total ionizing photon budget. © 2025. The Author(s). Published by the American Astronomical Society."}],"publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.3847/2041-8213/ae0e0e","OA_type":"gold","month":"11","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"language":[{"iso":"eng"}],"oa":1,"arxiv":1,"oa_version":"Published Version","date_updated":"2026-02-16T12:45:16Z","issue":"1","file":[{"checksum":"11d35c1c52c000f8c14bc6de2e9f4b3f","date_created":"2025-11-24T13:18:34Z","file_id":"20680","success":1,"file_size":39736710,"file_name":"2025_AstrophysicalJour_Yue.pdf","creator":"dernst","access_level":"open_access","date_updated":"2025-11-24T13:18:34Z","content_type":"application/pdf","relation":"main_file"}],"day":"01"}]