[{"isi":1,"external_id":{"arxiv":["1907.04547"],"isi":["000550164400001"]},"arxiv":1,"author":[{"orcid":"0000-0002-6854-1343","id":"A2E3BCBE-5FCC-11E9-AA4B-76F3E5697425","full_name":"Bossmann, Lea","first_name":"Lea","last_name":"Bossmann"}],"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","oa_version":"Published Version","file":[{"content_type":"application/pdf","creator":"dernst","date_updated":"2020-12-02T08:50:38Z","file_id":"8826","success":1,"file_size":942343,"checksum":"cc67a79a67bef441625fcb1cd031db3d","file_name":"2020_ArchiveRatMech_Bossmann.pdf","relation":"main_file","access_level":"open_access","date_created":"2020-12-02T08:50:38Z"}],"acknowledgement":"Open access funding provided by Institute of Science and Technology (IST Austria). I thank Stefan Teufel for helpful remarks and for his involvement in the closely related joint project [10]. Helpful discussions with Serena Cenatiempo and Nikolai Leopold are gratefully acknowledged. This work was supported by the German Research Foundation within the Research Training Group 1838 “Spectral Theory and Dynamics of Quantum Systems” and has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 754411.","has_accepted_license":"1","date_created":"2020-07-18T15:06:35Z","department":[{"_id":"RoSe"}],"publisher":"Springer Nature","citation":{"chicago":"Bossmann, Lea. “Derivation of the 2d Gross–Pitaevskii Equation for Strongly Confined 3d Bosons.” <i>Archive for Rational Mechanics and Analysis</i>. Springer Nature, 2020. <a href=\"https://doi.org/10.1007/s00205-020-01548-w\">https://doi.org/10.1007/s00205-020-01548-w</a>.","ista":"Bossmann L. 2020. Derivation of the 2d Gross–Pitaevskii equation for strongly confined 3d Bosons. Archive for Rational Mechanics and Analysis. 238(11), 541–606.","short":"L. Bossmann, Archive for Rational Mechanics and Analysis 238 (2020) 541–606.","mla":"Bossmann, Lea. “Derivation of the 2d Gross–Pitaevskii Equation for Strongly Confined 3d Bosons.” <i>Archive for Rational Mechanics and Analysis</i>, vol. 238, no. 11, Springer Nature, 2020, pp. 541–606, doi:<a href=\"https://doi.org/10.1007/s00205-020-01548-w\">10.1007/s00205-020-01548-w</a>.","apa":"Bossmann, L. (2020). Derivation of the 2d Gross–Pitaevskii equation for strongly confined 3d Bosons. <i>Archive for Rational Mechanics and Analysis</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s00205-020-01548-w\">https://doi.org/10.1007/s00205-020-01548-w</a>","ieee":"L. Bossmann, “Derivation of the 2d Gross–Pitaevskii equation for strongly confined 3d Bosons,” <i>Archive for Rational Mechanics and Analysis</i>, vol. 238, no. 11. Springer Nature, pp. 541–606, 2020.","ama":"Bossmann L. Derivation of the 2d Gross–Pitaevskii equation for strongly confined 3d Bosons. <i>Archive for Rational Mechanics and Analysis</i>. 2020;238(11):541-606. doi:<a href=\"https://doi.org/10.1007/s00205-020-01548-w\">10.1007/s00205-020-01548-w</a>"},"month":"11","status":"public","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"page":"541-606","quality_controlled":"1","project":[{"grant_number":"754411","_id":"260C2330-B435-11E9-9278-68D0E5697425","name":"ISTplus - Postdoctoral Fellowships","call_identifier":"H2020"},{"name":"IST Austria Open Access Fund","_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854"}],"date_published":"2020-11-01T00:00:00Z","_id":"8130","publication_identifier":{"issn":["0003-9527"],"eissn":["1432-0673"]},"intvolume":"       238","issue":"11","file_date_updated":"2020-12-02T08:50:38Z","ec_funded":1,"doi":"10.1007/s00205-020-01548-w","publication_status":"published","oa":1,"day":"01","year":"2020","title":"Derivation of the 2d Gross–Pitaevskii equation for strongly confined 3d Bosons","volume":238,"language":[{"iso":"eng"}],"corr_author":"1","abstract":[{"lang":"eng","text":"We study the dynamics of a system of N interacting bosons in a disc-shaped trap, which is realised by an external potential that confines the bosons in one spatial dimension to an interval of length of order ε. The interaction is non-negative and scaled in such a way that its scattering length is of order ε/N, while its range is proportional to (ε/N)β with scaling parameter β∈(0,1]. We consider the simultaneous limit (N,ε)→(∞,0) and assume that the system initially exhibits Bose–Einstein condensation. We prove that condensation is preserved by the N-body dynamics, where the time-evolved condensate wave function is the solution of a two-dimensional non-linear equation. The strength of the non-linearity depends on the scaling parameter β. For β∈(0,1), we obtain a cubic defocusing non-linear Schrödinger equation, while the choice β=1 yields a Gross–Pitaevskii equation featuring the scattering length of the interaction. In both cases, the coupling parameter depends on the confining potential."}],"article_processing_charge":"Yes (via OA deal)","article_type":"original","type":"journal_article","publication":"Archive for Rational Mechanics and Analysis","date_updated":"2025-04-14T07:44:05Z","scopus_import":"1","ddc":["510"]},{"isi":1,"author":[{"last_name":"Mayer","first_name":"Simon","id":"30C4630A-F248-11E8-B48F-1D18A9856A87","full_name":"Mayer, Simon"},{"first_name":"Robert","last_name":"Seiringer","orcid":"0000-0002-6781-0521","full_name":"Seiringer, Robert","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87"}],"external_id":{"isi":["000544595100001"],"arxiv":["2002.08281"]},"arxiv":1,"oa_version":"Preprint","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","department":[{"_id":"RoSe"}],"date_created":"2020-07-19T22:00:59Z","citation":{"chicago":"Mayer, Simon, and Robert Seiringer. “The Free Energy of the Two-Dimensional Dilute Bose Gas. II. Upper Bound.” <i>Journal of Mathematical Physics</i>. AIP Publishing, 2020. <a href=\"https://doi.org/10.1063/5.0005950\">https://doi.org/10.1063/5.0005950</a>.","ista":"Mayer S, Seiringer R. 2020. The free energy of the two-dimensional dilute Bose gas. II. Upper bound. Journal of Mathematical Physics. 61(6), 061901.","short":"S. Mayer, R. Seiringer, Journal of Mathematical Physics 61 (2020).","mla":"Mayer, Simon, and Robert Seiringer. “The Free Energy of the Two-Dimensional Dilute Bose Gas. II. Upper Bound.” <i>Journal of Mathematical Physics</i>, vol. 61, no. 6, 061901, AIP Publishing, 2020, doi:<a href=\"https://doi.org/10.1063/5.0005950\">10.1063/5.0005950</a>.","ieee":"S. Mayer and R. Seiringer, “The free energy of the two-dimensional dilute Bose gas. II. Upper bound,” <i>Journal of Mathematical Physics</i>, vol. 61, no. 6. AIP Publishing, 2020.","apa":"Mayer, S., &#38; Seiringer, R. (2020). The free energy of the two-dimensional dilute Bose gas. II. Upper bound. <i>Journal of Mathematical Physics</i>. AIP Publishing. <a href=\"https://doi.org/10.1063/5.0005950\">https://doi.org/10.1063/5.0005950</a>","ama":"Mayer S, Seiringer R. The free energy of the two-dimensional dilute Bose gas. II. Upper bound. <i>Journal of Mathematical Physics</i>. 2020;61(6). doi:<a href=\"https://doi.org/10.1063/5.0005950\">10.1063/5.0005950</a>"},"publisher":"AIP Publishing","status":"public","month":"06","quality_controlled":"1","project":[{"call_identifier":"H2020","_id":"25C6DC12-B435-11E9-9278-68D0E5697425","name":"Analysis of quantum many-body systems","grant_number":"694227"}],"date_published":"2020-06-22T00:00:00Z","issue":"6","intvolume":"        61","publication_identifier":{"issn":["0022-2488"]},"_id":"8134","main_file_link":[{"url":"https://arxiv.org/abs/2002.08281","open_access":"1"}],"ec_funded":1,"doi":"10.1063/5.0005950","publication_status":"published","day":"22","oa":1,"title":"The free energy of the two-dimensional dilute Bose gas. II. Upper bound","volume":61,"year":"2020","language":[{"iso":"eng"}],"article_number":"061901","corr_author":"1","abstract":[{"lang":"eng","text":"We prove an upper bound on the free energy of a two-dimensional homogeneous Bose gas in the thermodynamic limit. We show that for a2ρ ≪ 1 and βρ ≳ 1, the free energy per unit volume differs from the one of the non-interacting system by at most 4πρ2|lna2ρ|−1(2−[1−βc/β]2+) to leading order, where a is the scattering length of the two-body interaction potential, ρ is the density, β is the inverse temperature, and βc is the inverse Berezinskii–Kosterlitz–Thouless critical temperature for superfluidity. In combination with the corresponding matching lower bound proved by Deuchert et al. [Forum Math. Sigma 8, e20 (2020)], this shows equality in the asymptotic expansion."}],"article_processing_charge":"No","article_type":"original","date_updated":"2025-07-10T11:55:05Z","publication":"Journal of Mathematical Physics","type":"journal_article","scopus_import":"1"},{"corr_author":"1","abstract":[{"lang":"eng","text":"Cell production and differentiation for the acquisition of specific functions are key features of living systems. The dynamic network of cellular microtubules provides the necessary platform to accommodate processes associated with the transition of cells through the individual phases of cytogenesis. Here, we show that the plant hormone cytokinin fine‐tunes the activity of the microtubular cytoskeleton during cell differentiation and counteracts microtubular rearrangements driven by the hormone auxin. The endogenous upward gradient of cytokinin activity along the longitudinal growth axis in Arabidopsis thaliana roots correlates with robust rearrangements of the microtubule cytoskeleton in epidermal cells progressing from the proliferative to the differentiation stage. Controlled increases in cytokinin activity result in premature re‐organization of the microtubule network from transversal to an oblique disposition in cells prior to their differentiation, whereas attenuated hormone perception delays cytoskeleton conversion into a configuration typical for differentiated cells. Intriguingly, cytokinin can interfere with microtubules also in animal cells, such as leukocytes, suggesting that a cytokinin‐sensitive control pathway for the microtubular cytoskeleton may be at least partially conserved between plant and animal cells."}],"acknowledged_ssus":[{"_id":"Bio"},{"_id":"LifeSc"}],"article_number":"e104238","language":[{"iso":"eng"}],"year":"2020","title":"Phytohormone cytokinin guides microtubule dynamics during cell progression from proliferative to differentiated stage","volume":39,"oa":1,"day":"01","publication_status":"published","doi":"10.15252/embj.2019104238","file_date_updated":"2020-12-02T09:13:23Z","scopus_import":"1","ddc":["580"],"publication":"The Embo Journal","type":"journal_article","date_updated":"2025-04-15T06:37:27Z","article_type":"original","article_processing_charge":"Yes (via OA deal)","file":[{"creator":"dernst","content_type":"application/pdf","date_updated":"2020-12-02T09:13:23Z","file_id":"8827","success":1,"file_size":3497156,"checksum":"43d2b36598708e6ab05c69074e191d57","file_name":"2020_EMBO_Montesinos.pdf","date_created":"2020-12-02T09:13:23Z","relation":"main_file","access_level":"open_access"}],"acknowledgement":"We thank Takashi Aoyama, David Alabadi, and Bert De Rybel for sharing material, Jiří Friml, Maciek Adamowski, and Katerina Schwarzerová for inspiring discussions, and Martine De Cock for help in preparing the manuscript. This research was supported by the Scientific Service Units (SSUs) of IST Austria through resources provided by the Bioimaging Facility (BIF), especially to Robert Hauschild; and the Life Science Facility (LSF). J.C.M. is the recipient of a EMBO Long‐Term Fellowship (ALTF number 710‐2016). This work was supported with MEYS CR, project no.CZ.02.1.01/0.0/0.0/16_019/0000738 to J.P., and by the Austrian Science Fund (FWF01_I1774S) to E.B.","has_accepted_license":"1","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","oa_version":"Published Version","external_id":{"isi":["000548311800001"],"pmid":["32667089"]},"pmid":1,"author":[{"orcid":"0000-0001-9179-6099","id":"310A8E3E-F248-11E8-B48F-1D18A9856A87","full_name":"Montesinos López, Juan C","last_name":"Montesinos López","first_name":"Juan C"},{"first_name":"A","last_name":"Abuzeineh","full_name":"Abuzeineh, A"},{"full_name":"Kopf, Aglaja","orcid":"0000-0002-2187-6656","id":"31DAC7B6-F248-11E8-B48F-1D18A9856A87","last_name":"Kopf","first_name":"Aglaja"},{"first_name":"Alba","last_name":"Juanes Garcia","id":"40F05888-F248-11E8-B48F-1D18A9856A87","full_name":"Juanes Garcia, Alba","orcid":"0000-0002-1009-9652"},{"orcid":"0000-0002-5503-4983","id":"29B901B0-F248-11E8-B48F-1D18A9856A87","full_name":"Ötvös, Krisztina","last_name":"Ötvös","first_name":"Krisztina"},{"full_name":"Petrášek, J","last_name":"Petrášek","first_name":"J"},{"orcid":"0000-0002-6620-9179","full_name":"Sixt, Michael K","id":"41E9FBEA-F248-11E8-B48F-1D18A9856A87","first_name":"Michael K","last_name":"Sixt"},{"last_name":"Benková","first_name":"Eva","full_name":"Benková, Eva","id":"38F4F166-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8510-9739"}],"isi":1,"_id":"8142","intvolume":"        39","publication_identifier":{"issn":["0261-4189"],"eissn":["1460-2075"]},"issue":"17","date_published":"2020-09-01T00:00:00Z","project":[{"grant_number":"ALTF710-2016","_id":"253E54C8-B435-11E9-9278-68D0E5697425","name":"Molecular mechanism of auxindriven formative divisions delineating lateral root organogenesis in plants"},{"_id":"2542D156-B435-11E9-9278-68D0E5697425","name":"Hormone cross-talk drives nutrient dependent plant development","call_identifier":"FWF","grant_number":"I 1774-B16"}],"quality_controlled":"1","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"month":"09","status":"public","citation":{"ista":"Montesinos López JC, Abuzeineh A, Kopf A, Juanes Garcia A, Ötvös K, Petrášek J, Sixt MK, Benková E. 2020. Phytohormone cytokinin guides microtubule dynamics during cell progression from proliferative to differentiated stage. The Embo Journal. 39(17), e104238.","mla":"Montesinos López, Juan C., et al. “Phytohormone Cytokinin Guides Microtubule Dynamics during Cell Progression from Proliferative to Differentiated Stage.” <i>The Embo Journal</i>, vol. 39, no. 17, e104238, Embo Press, 2020, doi:<a href=\"https://doi.org/10.15252/embj.2019104238\">10.15252/embj.2019104238</a>.","short":"J.C. Montesinos López, A. Abuzeineh, A. Kopf, A. Juanes Garcia, K. Ötvös, J. Petrášek, M.K. Sixt, E. Benková, The Embo Journal 39 (2020).","chicago":"Montesinos López, Juan C, A Abuzeineh, Aglaja Kopf, Alba Juanes Garcia, Krisztina Ötvös, J Petrášek, Michael K Sixt, and Eva Benková. “Phytohormone Cytokinin Guides Microtubule Dynamics during Cell Progression from Proliferative to Differentiated Stage.” <i>The Embo Journal</i>. Embo Press, 2020. <a href=\"https://doi.org/10.15252/embj.2019104238\">https://doi.org/10.15252/embj.2019104238</a>.","ieee":"J. C. Montesinos López <i>et al.</i>, “Phytohormone cytokinin guides microtubule dynamics during cell progression from proliferative to differentiated stage,” <i>The Embo Journal</i>, vol. 39, no. 17. Embo Press, 2020.","ama":"Montesinos López JC, Abuzeineh A, Kopf A, et al. Phytohormone cytokinin guides microtubule dynamics during cell progression from proliferative to differentiated stage. <i>The Embo Journal</i>. 2020;39(17). doi:<a href=\"https://doi.org/10.15252/embj.2019104238\">10.15252/embj.2019104238</a>","apa":"Montesinos López, J. C., Abuzeineh, A., Kopf, A., Juanes Garcia, A., Ötvös, K., Petrášek, J., … Benková, E. (2020). Phytohormone cytokinin guides microtubule dynamics during cell progression from proliferative to differentiated stage. <i>The Embo Journal</i>. Embo Press. <a href=\"https://doi.org/10.15252/embj.2019104238\">https://doi.org/10.15252/embj.2019104238</a>"},"publisher":"Embo Press","department":[{"_id":"MiSi"},{"_id":"EvBe"}],"date_created":"2020-07-21T09:08:38Z"},{"date_published":"2020-01-28T00:00:00Z","date_updated":"2024-09-16T06:03:22Z","type":"report","ddc":["510","530","570"],"_id":"8151","publisher":"IST Austria","citation":{"apa":"Maslov, M., Kondrashov, F., Artner, C., Hennessey-Wesen, M., Kavcic, B., Machnik, N. N., … Tomanek, I. (2020). <i>Core Project Proceedings</i>. IST Austria.","ieee":"M. Maslov <i>et al.</i>, <i>Core Project Proceedings</i>. IST Austria, 2020.","ama":"Maslov M, Kondrashov F, Artner C, et al. <i>Core Project Proceedings</i>. IST Austria; 2020.","mla":"Maslov, Mikhail, et al. <i>Core Project Proceedings</i>. IST Austria, 2020.","short":"M. Maslov, F. Kondrashov, C. Artner, M. Hennessey-Wesen, B. Kavcic, N.N. Machnik, R.K. Satapathy, I. Tomanek, Core Project Proceedings, IST Austria, 2020.","ista":"Maslov M, Kondrashov F, Artner C, Hennessey-Wesen M, Kavcic B, Machnik NN, Satapathy RK, Tomanek I. 2020. Core Project Proceedings, IST Austria, 425p.","chicago":"Maslov, Mikhail, Fyodor Kondrashov, Christina Artner, Mike Hennessey-Wesen, Bor Kavcic, Nick N Machnik, Roshan K Satapathy, and Isabella Tomanek. <i>Core Project Proceedings</i>. IST Austria, 2020."},"date_created":"2020-07-22T14:48:14Z","page":"425","status":"public","article_processing_charge":"No","month":"01","title":"Core Project Proceedings","year":"2020","day":"28","extern":"1","has_accepted_license":"1","abstract":[{"lang":"eng","text":"The main idea behind the Core Project is to teach first year students at IST scientific communication skills and let them practice by presenting their research within an interdisciplinary environment. Over the course of the first semester, students participated in seminars, where they shared their results with the colleagues from other fields and took part in discussions on relevant subjects. The main focus during this sessions was on delivering the information in a simplified and comprehensible way, going into the very basics of a subject if necessary. At the end, the students were asked to present their research in the written form to exercise their writing skills. The reports were gathered in this document. All of them were reviewed by the  teaching assistants and write-ups illustrating unique stylistic features and, in general, an outstanding level of writing skills, were honorably mentioned in the section \"Selected Reports\"."}],"file":[{"file_id":"8152","date_updated":"2020-07-22T14:45:07Z","content_type":"application/pdf","creator":"dernst","relation":"main_file","access_level":"local","date_created":"2020-07-22T14:45:07Z","file_size":169620437,"file_name":"Core_Project_Proceedings_mod.pdf"}],"language":[{"iso":"eng"}],"author":[{"first_name":"Mikhail","last_name":"Maslov","orcid":"0000-0003-4074-2570","full_name":"Maslov, Mikhail","id":"2E65BB0E-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Kondrashov, Fyodor","id":"44FDEF62-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8243-4694","first_name":"Fyodor","last_name":"Kondrashov"},{"last_name":"Artner","first_name":"Christina","full_name":"Artner, Christina","id":"45DF286A-F248-11E8-B48F-1D18A9856A87"},{"id":"3F338C72-F248-11E8-B48F-1D18A9856A87","full_name":"Hennessey-Wesen, Mike","last_name":"Hennessey-Wesen","first_name":"Mike"},{"last_name":"Kavcic","first_name":"Bor","id":"350F91D2-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6041-254X","full_name":"Kavcic, Bor"},{"id":"3591A0AA-F248-11E8-B48F-1D18A9856A87","full_name":"Machnik, Nick N","orcid":"0000-0001-6617-9742","last_name":"Machnik","first_name":"Nick N"},{"first_name":"Roshan K","last_name":"Satapathy","full_name":"Satapathy, Roshan K","id":"46046B7A-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Tomanek, Isabella","id":"3981F020-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6197-363X","first_name":"Isabella","last_name":"Tomanek"}],"file_date_updated":"2020-07-22T14:45:07Z","publication_status":"published","oa_version":"None","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"_id":"8162","issue":"6","publication_identifier":{"issn":["0896-6273"]},"intvolume":"       107","quality_controlled":"1","project":[{"_id":"2625A13E-B435-11E9-9278-68D0E5697425","name":"Molecular mechanisms of radial neuronal migration","grant_number":"24812"},{"call_identifier":"FWF","_id":"268F8446-B435-11E9-9278-68D0E5697425","name":"Role of Eed in neural stem cell lineage progression","grant_number":"T01031"},{"_id":"264E56E2-B435-11E9-9278-68D0E5697425","name":"Molecular Mechanisms Regulating Gliogenesis in the Neocortex","call_identifier":"FWF","grant_number":"M02416"},{"grant_number":"LS13-002","name":"Mapping Cell-Type Specificity of the Genomic Imprintome in the Brain","_id":"25D92700-B435-11E9-9278-68D0E5697425"},{"grant_number":"RGP0053/2014","name":"Quantitative Structure-Function Analysis of Cerebral Cortex Assembly at Clonal Level","_id":"25D7962E-B435-11E9-9278-68D0E5697425"},{"call_identifier":"FP7","_id":"25D61E48-B435-11E9-9278-68D0E5697425","name":"Molecular Mechanisms of Cerebral Cortex Development","grant_number":"618444"},{"grant_number":"725780","_id":"260018B0-B435-11E9-9278-68D0E5697425","name":"Principles of Neural Stem Cell Lineage Progression in Cerebral Cortex Development","call_identifier":"H2020"}],"date_published":"2020-09-23T00:00:00Z","month":"09","status":"public","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","image":"/images/cc_by_nc_nd.png","short":"CC BY-NC-ND (4.0)"},"page":"1160-1179.e9","date_created":"2020-07-23T16:03:12Z","department":[{"_id":"SiHi"}],"citation":{"apa":"Laukoter, S., Pauler, F., Beattie, R. J., Amberg, N., Hansen, A. H., Streicher, C., … Hippenmeyer, S. (2020). Cell-type specificity of genomic imprinting in cerebral cortex. <i>Neuron</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.neuron.2020.06.031\">https://doi.org/10.1016/j.neuron.2020.06.031</a>","ieee":"S. Laukoter <i>et al.</i>, “Cell-type specificity of genomic imprinting in cerebral cortex,” <i>Neuron</i>, vol. 107, no. 6. Elsevier, p. 1160–1179.e9, 2020.","ama":"Laukoter S, Pauler F, Beattie RJ, et al. Cell-type specificity of genomic imprinting in cerebral cortex. <i>Neuron</i>. 2020;107(6):1160-1179.e9. doi:<a href=\"https://doi.org/10.1016/j.neuron.2020.06.031\">10.1016/j.neuron.2020.06.031</a>","ista":"Laukoter S, Pauler F, Beattie RJ, Amberg N, Hansen AH, Streicher C, Penz T, Bock C, Hippenmeyer S. 2020. Cell-type specificity of genomic imprinting in cerebral cortex. Neuron. 107(6), 1160–1179.e9.","mla":"Laukoter, Susanne, et al. “Cell-Type Specificity of Genomic Imprinting in Cerebral Cortex.” <i>Neuron</i>, vol. 107, no. 6, Elsevier, 2020, p. 1160–1179.e9, doi:<a href=\"https://doi.org/10.1016/j.neuron.2020.06.031\">10.1016/j.neuron.2020.06.031</a>.","short":"S. Laukoter, F. Pauler, R.J. Beattie, N. Amberg, A.H. Hansen, C. Streicher, T. Penz, C. Bock, S. Hippenmeyer, Neuron 107 (2020) 1160–1179.e9.","chicago":"Laukoter, Susanne, Florian Pauler, Robert J Beattie, Nicole Amberg, Andi H Hansen, Carmen Streicher, Thomas Penz, Christoph Bock, and Simon Hippenmeyer. “Cell-Type Specificity of Genomic Imprinting in Cerebral Cortex.” <i>Neuron</i>. Elsevier, 2020. <a href=\"https://doi.org/10.1016/j.neuron.2020.06.031\">https://doi.org/10.1016/j.neuron.2020.06.031</a>."},"publisher":"Elsevier","file":[{"creator":"dernst","content_type":"application/pdf","file_id":"8828","date_updated":"2020-12-02T09:26:46Z","checksum":"7becdc16a6317304304631087ae7dd7f","success":1,"file_size":8911830,"file_name":"2020_Neuron_Laukoter.pdf","date_created":"2020-12-02T09:26:46Z","relation":"main_file","access_level":"open_access"}],"acknowledgement":"We thank A. Heger (IST Austria Preclinical Facility), A. Sommer and C. Czepe (VBCF GmbH, NGS Unit), and A. Seitz and P. Moll (Lexogen GmbH) for technical support; G. Arque, S. Resch, C. Igler, C. Dotter, C. Yahya, Q. Hudson, and D. Andergassen for initial experiments and/or assistance; D. Barlow, O. Bell, and all members of the Hippenmeyer lab for discussion; and N. Barton, B. Vicoso, M. Sixt, and L. Luo for comments on earlier versions of the manuscript. This research was supported by the Scientific Service Units (SSU) of IST Austria through resources provided by the Bioimaging Facilities (BIF), Life Science Facilities (LSF), and Preclinical Facilities (PCF). A.H.H. is a recipient of a DOC fellowship (24812) of the Austrian Academy of Sciences. N.A. received support from the FWF Firnberg-Programm (T 1031). R.B. received support from the FWF Meitner-Programm (M 2416). This work was also supported by IST Austria institutional funds; a NÖ Forschung und Bildung n[f+b] life science call grant (C13-002) to S.H.; a program grant from the Human Frontiers Science Program (RGP0053/2014) to S.H.; the People Programme (Marie Curie Actions) of the European Union’s Seventh Framework Programme (FP7/2007-2013) under REA grant agreement 618444 to S.H.; and the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation program (grant agreement 725780 LinPro) to S.H.","has_accepted_license":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","related_material":{"link":[{"url":"https://ist.ac.at/en/news/cells-react-differently-to-genomic-imprinting/","description":"News on IST Website","relation":"press_release"}]},"oa_version":"Published Version","isi":1,"external_id":{"pmid":["32707083"],"isi":["000579698700006"]},"pmid":1,"author":[{"full_name":"Laukoter, Susanne","orcid":"0000-0002-7903-3010","id":"2D6B7A9A-F248-11E8-B48F-1D18A9856A87","first_name":"Susanne","last_name":"Laukoter"},{"first_name":"Florian","last_name":"Pauler","id":"48EA0138-F248-11E8-B48F-1D18A9856A87","full_name":"Pauler, Florian","orcid":"0000-0002-7462-0048"},{"last_name":"Beattie","first_name":"Robert J","orcid":"0000-0002-8483-8753","id":"2E26DF60-F248-11E8-B48F-1D18A9856A87","full_name":"Beattie, Robert J"},{"last_name":"Amberg","first_name":"Nicole","id":"4CD6AAC6-F248-11E8-B48F-1D18A9856A87","full_name":"Amberg, Nicole","orcid":"0000-0002-3183-8207"},{"id":"38853E16-F248-11E8-B48F-1D18A9856A87","full_name":"Hansen, Andi H","last_name":"Hansen","first_name":"Andi H"},{"last_name":"Streicher","first_name":"Carmen","id":"36BCB99C-F248-11E8-B48F-1D18A9856A87","full_name":"Streicher, Carmen"},{"last_name":"Penz","first_name":"Thomas","full_name":"Penz, Thomas"},{"orcid":"0000-0001-6091-3088","full_name":"Bock, Christoph","first_name":"Christoph","last_name":"Bock"},{"last_name":"Hippenmeyer","first_name":"Simon","id":"37B36620-F248-11E8-B48F-1D18A9856A87","full_name":"Hippenmeyer, Simon","orcid":"0000-0003-2279-1061"}],"scopus_import":"1","ddc":["570"],"type":"journal_article","publication":"Neuron","date_updated":"2025-06-12T07:19:46Z","article_processing_charge":"No","article_type":"original","language":[{"iso":"eng"}],"corr_author":"1","abstract":[{"text":"In mammalian genomes, a subset of genes is regulated by genomic imprinting, resulting in silencing of one parental allele. Imprinting is essential for cerebral cortex development, but prevalence and functional impact in individual cells is unclear. Here, we determined allelic expression in cortical cell types and established a quantitative platform to interrogate imprinting in single cells. We created cells with uniparental chromosome disomy (UPD) containing two copies of either the maternal or the paternal chromosome; hence, imprinted genes will be 2-fold overexpressed or not expressed. By genetic labeling of UPD, we determined cellular phenotypes and transcriptional responses to deregulated imprinted gene expression at unprecedented single-cell resolution. We discovered an unexpected degree of cell-type specificity and a novel function of imprinting in the regulation of cortical astrocyte survival. More generally, our results suggest functional relevance of imprinted gene expression in glial astrocyte lineage and thus for generating cortical cell-type diversity.","lang":"eng"}],"acknowledged_ssus":[{"_id":"Bio"},{"_id":"LifeSc"},{"_id":"PreCl"}],"oa":1,"day":"23","year":"2020","title":"Cell-type specificity of genomic imprinting in cerebral cortex","volume":107,"doi":"10.1016/j.neuron.2020.06.031","publication_status":"published","file_date_updated":"2020-12-02T09:26:46Z","ec_funded":1},{"_id":"8163","issue":"2","publication_identifier":{"issn":["0081-6906"],"eissn":["1588-2896"]},"intvolume":"        57","quality_controlled":"1","project":[{"grant_number":"754411","call_identifier":"H2020","name":"ISTplus - Postdoctoral Fellowships","_id":"260C2330-B435-11E9-9278-68D0E5697425"},{"grant_number":"Z00342","_id":"268116B8-B435-11E9-9278-68D0E5697425","name":"Mathematics, Computer Science","call_identifier":"FWF"}],"date_published":"2020-07-24T00:00:00Z","month":"07","status":"public","tmp":{"name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","image":"/images/cc_by_nc.png","short":"CC BY-NC (4.0)"},"page":"193-199","department":[{"_id":"HeEd"}],"date_created":"2020-07-24T07:09:18Z","citation":{"apa":"Vegter, G., &#38; Wintraecken, M. (2020). Refutation of a claim made by Fejes Tóth on the accuracy of surface meshes. <i>Studia Scientiarum Mathematicarum Hungarica</i>. Akadémiai Kiadó. <a href=\"https://doi.org/10.1556/012.2020.57.2.1454\">https://doi.org/10.1556/012.2020.57.2.1454</a>","ama":"Vegter G, Wintraecken M. Refutation of a claim made by Fejes Tóth on the accuracy of surface meshes. <i>Studia Scientiarum Mathematicarum Hungarica</i>. 2020;57(2):193-199. doi:<a href=\"https://doi.org/10.1556/012.2020.57.2.1454\">10.1556/012.2020.57.2.1454</a>","ieee":"G. Vegter and M. Wintraecken, “Refutation of a claim made by Fejes Tóth on the accuracy of surface meshes,” <i>Studia Scientiarum Mathematicarum Hungarica</i>, vol. 57, no. 2. Akadémiai Kiadó, pp. 193–199, 2020.","chicago":"Vegter, Gert, and Mathijs Wintraecken. “Refutation of a Claim Made by Fejes Tóth on the Accuracy of Surface Meshes.” <i>Studia Scientiarum Mathematicarum Hungarica</i>. Akadémiai Kiadó, 2020. <a href=\"https://doi.org/10.1556/012.2020.57.2.1454\">https://doi.org/10.1556/012.2020.57.2.1454</a>.","ista":"Vegter G, Wintraecken M. 2020. Refutation of a claim made by Fejes Tóth on the accuracy of surface meshes. Studia Scientiarum Mathematicarum Hungarica. 57(2), 193–199.","short":"G. Vegter, M. Wintraecken, Studia Scientiarum Mathematicarum Hungarica 57 (2020) 193–199.","mla":"Vegter, Gert, and Mathijs Wintraecken. “Refutation of a Claim Made by Fejes Tóth on the Accuracy of Surface Meshes.” <i>Studia Scientiarum Mathematicarum Hungarica</i>, vol. 57, no. 2, Akadémiai Kiadó, 2020, pp. 193–99, doi:<a href=\"https://doi.org/10.1556/012.2020.57.2.1454\">10.1556/012.2020.57.2.1454</a>."},"publisher":"Akadémiai Kiadó","file":[{"date_updated":"2020-07-24T07:09:06Z","file_id":"8164","content_type":"application/pdf","creator":"mwintrae","relation":"main_file","access_level":"open_access","date_created":"2020-07-24T07:09:06Z","file_size":1476072,"file_name":"57-2-05_4214-1454Vegter-Wintraecken_OpenAccess_CC-BY-NC.pdf"}],"has_accepted_license":"1","acknowledgement":"The authors are greatly indebted to Dror Atariah, Günther Rote and John Sullivan for discussion and suggestions. The authors also thank Jean-Daniel Boissonnat, Ramsay Dyer, David de Laat and Rien van de Weijgaert for discussion. This work has been supported in part by the European Union’s Seventh Framework Programme for Research of the\r\nEuropean Commission, under FET-Open grant number 255827 (CGL Computational Geometry Learning) and ERC Grant Agreement number 339025 GUDHI (Algorithmic Foundations of Geometry Understanding in Higher Dimensions), the European Union’s Horizon 2020 research and innovation programme under the Marie Sk lodowska-Curie grant agreement number 754411,and the Austrian Science Fund (FWF): Z00342 N31.","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Published Version","isi":1,"external_id":{"isi":["000570978400005"]},"author":[{"full_name":"Vegter, Gert","first_name":"Gert","last_name":"Vegter"},{"last_name":"Wintraecken","first_name":"Mathijs","orcid":"0000-0002-7472-2220","full_name":"Wintraecken, Mathijs","id":"307CFBC8-F248-11E8-B48F-1D18A9856A87"}],"scopus_import":"1","ddc":["510"],"type":"journal_article","publication":"Studia Scientiarum Mathematicarum Hungarica","date_updated":"2025-04-15T07:16:57Z","license":"https://creativecommons.org/licenses/by-nc/4.0/","article_processing_charge":"No","article_type":"original","language":[{"iso":"eng"}],"abstract":[{"lang":"eng","text":"Fejes Tóth [3] studied approximations of smooth surfaces in three-space by piecewise flat triangular meshes with a given number of vertices on the surface that are optimal with respect to Hausdorff distance. He proves that this Hausdorff distance decreases inversely proportional with the number of vertices of the approximating mesh if the surface is convex. He also claims that this Hausdorff distance is inversely proportional to the square of the number of vertices for a specific non-convex surface, namely a one-sheeted hyperboloid of revolution bounded by two congruent circles. We refute this claim, and show that the asymptotic behavior of the Hausdorff distance is linear, that is the same as for convex surfaces."}],"corr_author":"1","oa":1,"day":"24","year":"2020","title":"Refutation of a claim made by Fejes Tóth on the accuracy of surface meshes","volume":57,"doi":"10.1556/012.2020.57.2.1454","publication_status":"published","file_date_updated":"2020-07-24T07:09:06Z","ec_funded":1},{"oa":1,"day":"12","year":"2020","volume":375,"title":"The evolution of strong reproductive isolation between sympatric intertidal snails","language":[{"iso":"eng"}],"article_number":"20190545","abstract":[{"text":"The evolution of strong reproductive isolation (RI) is fundamental to the origins and maintenance of biological diversity, especially in situations where geographical distributions of taxa broadly overlap. But what is the history behind strong barriers currently acting in sympatry? Using whole-genome sequencing and single nucleotide polymorphism genotyping, we inferred (i) the evolutionary relationships, (ii) the strength of RI, and (iii) the demographic history of divergence between two broadly sympatric taxa of intertidal snail. Despite being cryptic, based on external morphology, Littorina arcana and Littorina saxatilis differ in their mode of female reproduction (egg-laying versus brooding), which may generate a strong post-zygotic barrier. We show that egg-laying and brooding snails are closely related, but genetically distinct. Genotyping of 3092 snails from three locations failed to recover any recent hybrid or backcrossed individuals, confirming that RI is strong. There was, however, evidence for a very low level of asymmetrical introgression, suggesting that isolation remains incomplete. The presence of strong, asymmetrical RI was further supported by demographic analysis of these populations. Although the taxa are currently broadly sympatric, demographic modelling suggests that they initially diverged during a short period of geographical separation involving very low gene flow. Our study suggests that some geographical separation may kick-start the evolution of strong RI, facilitating subsequent coexistence of taxa in sympatry. The strength of RI needed to achieve sympatry and the subsequent effect of sympatry on RI remain open questions.","lang":"eng"}],"main_file_link":[{"url":"https://doi.org/10.1098/rstb.2019.0545","open_access":"1"}],"doi":"10.1098/rstb.2019.0545","publication_status":"published","publication":"Philosophical Transactions of the Royal Society. Series B: Biological Sciences","type":"journal_article","date_updated":"2023-08-22T08:22:13Z","scopus_import":"1","article_processing_charge":"No","article_type":"original","acknowledgement":"Funding was provided by the Natural Environment Research Council (NERC) and the European Research Council. We thank Rui Faria, Nicola Nadeau, Martin Garlovsky and Hernan Morales for advice and/or useful discussion during the project. Richard Turney, Graciela Sotelo, Jenny Larson, Stéphane Loisel and Meghan Wharton participated in the collection and processing of samples. Mark Dunning helped with the development of bioinformatic pipelines. The analysis of genomic data was conducted on the University of Sheffield High-performance computer, ShARC. Jeffrey Feder and an anonymous reviewer provided comments that improved the manuscript.","isi":1,"external_id":{"isi":["000552662100014"],"pmid":["32654639"]},"author":[{"id":"43161670-5719-11EA-8025-FABC3DDC885E","full_name":"Stankowski, Sean","last_name":"Stankowski","first_name":"Sean"},{"orcid":"0000-0003-1050-4969","full_name":"Westram, Anja M","id":"3C147470-F248-11E8-B48F-1D18A9856A87","first_name":"Anja M","last_name":"Westram"},{"full_name":"Zagrodzka, Zuzanna B.","last_name":"Zagrodzka","first_name":"Zuzanna B."},{"last_name":"Eyres","first_name":"Isobel","full_name":"Eyres, Isobel"},{"full_name":"Broquet, Thomas","first_name":"Thomas","last_name":"Broquet"},{"last_name":"Johannesson","first_name":"Kerstin","full_name":"Johannesson, Kerstin"},{"full_name":"Butlin, Roger K.","first_name":"Roger K.","last_name":"Butlin"}],"pmid":1,"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","oa_version":"Published Version","quality_controlled":"1","date_published":"2020-07-12T00:00:00Z","_id":"8167","publication_identifier":{"eissn":["1471-2970"]},"intvolume":"       375","issue":"1806","date_created":"2020-07-26T22:01:01Z","department":[{"_id":"NiBa"}],"publisher":"The Royal Society","citation":{"chicago":"Stankowski, Sean, Anja M Westram, Zuzanna B. Zagrodzka, Isobel Eyres, Thomas Broquet, Kerstin Johannesson, and Roger K. Butlin. “The Evolution of Strong Reproductive Isolation between Sympatric Intertidal Snails.” <i>Philosophical Transactions of the Royal Society. Series B: Biological Sciences</i>. The Royal Society, 2020. <a href=\"https://doi.org/10.1098/rstb.2019.0545\">https://doi.org/10.1098/rstb.2019.0545</a>.","short":"S. Stankowski, A.M. Westram, Z.B. Zagrodzka, I. Eyres, T. Broquet, K. Johannesson, R.K. Butlin, Philosophical Transactions of the Royal Society. Series B: Biological Sciences 375 (2020).","mla":"Stankowski, Sean, et al. “The Evolution of Strong Reproductive Isolation between Sympatric Intertidal Snails.” <i>Philosophical Transactions of the Royal Society. Series B: Biological Sciences</i>, vol. 375, no. 1806, 20190545, The Royal Society, 2020, doi:<a href=\"https://doi.org/10.1098/rstb.2019.0545\">10.1098/rstb.2019.0545</a>.","ista":"Stankowski S, Westram AM, Zagrodzka ZB, Eyres I, Broquet T, Johannesson K, Butlin RK. 2020. The evolution of strong reproductive isolation between sympatric intertidal snails. Philosophical Transactions of the Royal Society. Series B: Biological Sciences. 375(1806), 20190545.","ama":"Stankowski S, Westram AM, Zagrodzka ZB, et al. The evolution of strong reproductive isolation between sympatric intertidal snails. <i>Philosophical Transactions of the Royal Society Series B: Biological Sciences</i>. 2020;375(1806). doi:<a href=\"https://doi.org/10.1098/rstb.2019.0545\">10.1098/rstb.2019.0545</a>","apa":"Stankowski, S., Westram, A. M., Zagrodzka, Z. B., Eyres, I., Broquet, T., Johannesson, K., &#38; Butlin, R. K. (2020). The evolution of strong reproductive isolation between sympatric intertidal snails. <i>Philosophical Transactions of the Royal Society. Series B: Biological Sciences</i>. The Royal Society. <a href=\"https://doi.org/10.1098/rstb.2019.0545\">https://doi.org/10.1098/rstb.2019.0545</a>","ieee":"S. Stankowski <i>et al.</i>, “The evolution of strong reproductive isolation between sympatric intertidal snails,” <i>Philosophical Transactions of the Royal Society. Series B: Biological Sciences</i>, vol. 375, no. 1806. The Royal Society, 2020."},"month":"07","status":"public"},{"external_id":{"pmid":["32654637"],"isi":["000552662100001"]},"pmid":1,"author":[{"full_name":"Kulmuni, Jonna","first_name":"Jonna","last_name":"Kulmuni"},{"full_name":"Butlin, Roger K.","last_name":"Butlin","first_name":"Roger K."},{"first_name":"Kay","last_name":"Lucek","full_name":"Lucek, Kay"},{"last_name":"Savolainen","first_name":"Vincent","full_name":"Savolainen, Vincent"},{"id":"3C147470-F248-11E8-B48F-1D18A9856A87","full_name":"Westram, Anja M","orcid":"0000-0003-1050-4969","last_name":"Westram","first_name":"Anja M"}],"isi":1,"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","oa_version":"Published Version","citation":{"ama":"Kulmuni J, Butlin RK, Lucek K, Savolainen V, Westram AM. Towards the completion of speciation: The evolution of reproductive isolation beyond the first barriers. <i>Philosophical Transactions of the Royal Society Series B: Biological sciences</i>. 2020;375(1806). doi:<a href=\"https://doi.org/10.1098/rstb.2019.0528\">10.1098/rstb.2019.0528</a>","ieee":"J. Kulmuni, R. K. Butlin, K. Lucek, V. Savolainen, and A. M. Westram, “Towards the completion of speciation: The evolution of reproductive isolation beyond the first barriers,” <i>Philosophical Transactions of the Royal Society. Series B: Biological sciences</i>, vol. 375, no. 1806. The Royal Society, 2020.","apa":"Kulmuni, J., Butlin, R. K., Lucek, K., Savolainen, V., &#38; Westram, A. M. (2020). Towards the completion of speciation: The evolution of reproductive isolation beyond the first barriers. <i>Philosophical Transactions of the Royal Society. Series B: Biological Sciences</i>. The Royal Society. <a href=\"https://doi.org/10.1098/rstb.2019.0528\">https://doi.org/10.1098/rstb.2019.0528</a>","ista":"Kulmuni J, Butlin RK, Lucek K, Savolainen V, Westram AM. 2020. Towards the completion of speciation: The evolution of reproductive isolation beyond the first barriers. Philosophical Transactions of the Royal Society. Series B: Biological sciences. 375(1806), 20190528.","short":"J. Kulmuni, R.K. Butlin, K. Lucek, V. Savolainen, A.M. Westram, Philosophical Transactions of the Royal Society. Series B: Biological Sciences 375 (2020).","mla":"Kulmuni, Jonna, et al. “Towards the Completion of Speciation: The Evolution of Reproductive Isolation beyond the First Barriers.” <i>Philosophical Transactions of the Royal Society. Series B: Biological Sciences</i>, vol. 375, no. 1806, 20190528, The Royal Society, 2020, doi:<a href=\"https://doi.org/10.1098/rstb.2019.0528\">10.1098/rstb.2019.0528</a>.","chicago":"Kulmuni, Jonna, Roger K. Butlin, Kay Lucek, Vincent Savolainen, and Anja M Westram. “Towards the Completion of Speciation: The Evolution of Reproductive Isolation beyond the First Barriers.” <i>Philosophical Transactions of the Royal Society. Series B: Biological Sciences</i>. The Royal Society, 2020. <a href=\"https://doi.org/10.1098/rstb.2019.0528\">https://doi.org/10.1098/rstb.2019.0528</a>."},"publisher":"The Royal Society","date_created":"2020-07-26T22:01:01Z","department":[{"_id":"NiBa"}],"month":"07","status":"public","date_published":"2020-07-12T00:00:00Z","quality_controlled":"1","project":[{"call_identifier":"H2020","_id":"265B41B8-B435-11E9-9278-68D0E5697425","name":"Theoretical and empirical approaches to understanding Parallel Adaptation","grant_number":"797747"}],"_id":"8168","publication_identifier":{"issn":["0962-8436"],"eissn":["1471-2970"]},"intvolume":"       375","issue":"1806","ec_funded":1,"main_file_link":[{"url":"https://doi.org/10.1098/rstb.2019.0528","open_access":"1"}],"publication_status":"published","doi":"10.1098/rstb.2019.0528","year":"2020","title":"Towards the completion of speciation: The evolution of reproductive isolation beyond the first barriers","volume":375,"oa":1,"day":"12","abstract":[{"lang":"eng","text":"Speciation, that is, the evolution of reproductive barriers eventually leading to complete isolation, is a crucial process generating biodiversity. Recent work has contributed much to our understanding of how reproductive barriers begin to evolve, and how they are maintained in the face of gene flow. However, little is known about the transition from partial to strong reproductive isolation (RI) and the completion of speciation. We argue that the evolution of strong RI is likely to involve different processes, or new interactions among processes, compared with the evolution of the first reproductive barriers. Transition to strong RI may be brought about by changing external conditions, for example, following secondary contact. However, the increasing levels of RI themselves create opportunities for new barriers to evolve and, and interaction or coupling among barriers. These changing processes may depend on genomic architecture and leave detectable signals in the genome. We outline outstanding questions and suggest more theoretical and empirical work, considering both patterns and processes associated with strong RI, is needed to understand how speciation is completed."}],"language":[{"iso":"eng"}],"article_number":"20190528","article_type":"original","article_processing_charge":"No","publication":"Philosophical Transactions of the Royal Society. Series B: Biological sciences","type":"journal_article","date_updated":"2025-04-14T07:48:21Z","scopus_import":"1"},{"date_updated":"2024-10-09T21:05:14Z","type":"software","date_published":"2020-08-24T00:00:00Z","license":"https://opensource.org/licenses/BSD-3-Clause","_id":"8181","date_created":"2020-07-28T16:24:37Z","department":[{"_id":"Bio"}],"citation":{"ieee":"R. Hauschild, “Amplified centrosomes in dendritic cells promote immune cell effector functions.” IST Austria, 2020.","ama":"Hauschild R. Amplified centrosomes in dendritic cells promote immune cell effector functions. 2020. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:8181\">10.15479/AT:ISTA:8181</a>","apa":"Hauschild, R. (2020). Amplified centrosomes in dendritic cells promote immune cell effector functions. IST Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:8181\">https://doi.org/10.15479/AT:ISTA:8181</a>","chicago":"Hauschild, Robert. “Amplified Centrosomes in Dendritic Cells Promote Immune Cell Effector Functions.” IST Austria, 2020. <a href=\"https://doi.org/10.15479/AT:ISTA:8181\">https://doi.org/10.15479/AT:ISTA:8181</a>.","ista":"Hauschild R. 2020. Amplified centrosomes in dendritic cells promote immune cell effector functions, IST Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:8181\">10.15479/AT:ISTA:8181</a>.","short":"R. Hauschild, (2020).","mla":"Hauschild, Robert. <i>Amplified Centrosomes in Dendritic Cells Promote Immune Cell Effector Functions</i>. IST Austria, 2020, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:8181\">10.15479/AT:ISTA:8181</a>."},"publisher":"IST Austria","status":"public","month":"08","tmp":{"short":"3-Clause BSD","name":"The 3-Clause BSD License","legal_code_url":"https://opensource.org/licenses/BSD-3-Clause"},"day":"24","oa":1,"title":"Amplified centrosomes in dendritic cells promote immune cell effector functions","year":"2020","has_accepted_license":"1","corr_author":"1","file":[{"content_type":"text/plain","creator":"rhauschild","date_updated":"2020-08-24T15:43:49Z","file_id":"8290","file_size":6577,"checksum":"878c60885ce30afb59a884dd5eef451c","success":1,"file_name":"centriolesDistance.m","relation":"main_file","access_level":"open_access","date_created":"2020-08-24T15:43:49Z"},{"file_id":"8291","date_updated":"2020-08-24T15:43:52Z","content_type":"text/plain","creator":"rhauschild","relation":"main_file","access_level":"open_access","date_created":"2020-08-24T15:43:52Z","success":1,"checksum":"5a93ac7be2b66b28e4bd8b113ee6aade","file_size":2680,"file_name":"goTracking.m"}],"file_date_updated":"2020-08-24T15:43:52Z","author":[{"first_name":"Robert","last_name":"Hauschild","full_name":"Hauschild, Robert","id":"4E01D6B4-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-9843-3522"}],"doi":"10.15479/AT:ISTA:8181","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"page":"7498-7507","month":"07","status":"public","citation":{"ista":"Henderson PM, Tsiminaki V, Lampert C. 2020. Leveraging 2D data to learn textured 3D mesh generation. Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition. CVPR: Conference on Computer Vision and Pattern Recognition, 7498–7507.","mla":"Henderson, Paul M., et al. “Leveraging 2D Data to Learn Textured 3D Mesh Generation.” <i>Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition</i>, IEEE, 2020, pp. 7498–507, doi:<a href=\"https://doi.org/10.1109/CVPR42600.2020.00752\">10.1109/CVPR42600.2020.00752</a>.","short":"P.M. Henderson, V. Tsiminaki, C. Lampert, in:, Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, IEEE, 2020, pp. 7498–7507.","chicago":"Henderson, Paul M, Vagia Tsiminaki, and Christoph Lampert. “Leveraging 2D Data to Learn Textured 3D Mesh Generation.” In <i>Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition</i>, 7498–7507. IEEE, 2020. <a href=\"https://doi.org/10.1109/CVPR42600.2020.00752\">https://doi.org/10.1109/CVPR42600.2020.00752</a>.","ieee":"P. M. Henderson, V. Tsiminaki, and C. Lampert, “Leveraging 2D data to learn textured 3D mesh generation,” in <i>Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition</i>, Virtual, 2020, pp. 7498–7507.","apa":"Henderson, P. M., Tsiminaki, V., &#38; Lampert, C. (2020). Leveraging 2D data to learn textured 3D mesh generation. In <i>Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition</i> (pp. 7498–7507). Virtual: IEEE. <a href=\"https://doi.org/10.1109/CVPR42600.2020.00752\">https://doi.org/10.1109/CVPR42600.2020.00752</a>","ama":"Henderson PM, Tsiminaki V, Lampert C. Leveraging 2D data to learn textured 3D mesh generation. In: <i>Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition</i>. IEEE; 2020:7498-7507. doi:<a href=\"https://doi.org/10.1109/CVPR42600.2020.00752\">10.1109/CVPR42600.2020.00752</a>"},"publisher":"IEEE","department":[{"_id":"ChLa"}],"date_created":"2020-07-31T16:53:49Z","_id":"8186","publication_identifier":{"eissn":["2575-7075"],"eisbn":["9781728171685"]},"date_published":"2020-07-01T00:00:00Z","quality_controlled":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Submitted Version","arxiv":1,"external_id":{"arxiv":["2004.04180"]},"author":[{"full_name":"Henderson, Paul M","id":"13C09E74-18D9-11E9-8878-32CFE5697425","orcid":"0000-0002-5198-7445","first_name":"Paul M","last_name":"Henderson"},{"first_name":"Vagia","last_name":"Tsiminaki","full_name":"Tsiminaki, Vagia"},{"orcid":"0000-0001-8622-7887","full_name":"Lampert, Christoph","id":"40C20FD2-F248-11E8-B48F-1D18A9856A87","last_name":"Lampert","first_name":"Christoph"}],"file":[{"date_created":"2020-07-31T16:57:12Z","relation":"main_file","access_level":"open_access","file_size":10262773,"success":1,"file_name":"paper.pdf","date_updated":"2020-07-31T16:57:12Z","file_id":"8187","creator":"phenders","content_type":"application/pdf"}],"has_accepted_license":"1","article_processing_charge":"No","scopus_import":"1","ddc":["004"],"publication":"Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition","type":"conference","date_updated":"2023-10-17T07:37:11Z","publication_status":"published","doi":"10.1109/CVPR42600.2020.00752","main_file_link":[{"open_access":"1","url":"https://openaccess.thecvf.com/content_CVPR_2020/papers/Henderson_Leveraging_2D_Data_to_Learn_Textured_3D_Mesh_Generation_CVPR_2020_paper.pdf"}],"file_date_updated":"2020-07-31T16:57:12Z","abstract":[{"lang":"eng","text":"Numerous methods have been proposed for probabilistic generative modelling of\r\n3D objects. However, none of these is able to produce textured objects, which\r\nrenders them of limited use for practical tasks. In this work, we present the\r\nfirst generative model of textured 3D meshes. Training such a model would\r\ntraditionally require a large dataset of textured meshes, but unfortunately,\r\nexisting datasets of meshes lack detailed textures. We instead propose a new\r\ntraining methodology that allows learning from collections of 2D images without\r\nany 3D information. To do so, we train our model to explain a distribution of\r\nimages by modelling each image as a 3D foreground object placed in front of a\r\n2D background. Thus, it learns to generate meshes that when rendered, produce\r\nimages similar to those in its training set.\r\n  A well-known problem when generating meshes with deep networks is the\r\nemergence of self-intersections, which are problematic for many use-cases. As a\r\nsecond contribution we therefore introduce a new generation process for 3D\r\nmeshes that guarantees no self-intersections arise, based on the physical\r\nintuition that faces should push one another out of the way as they move.\r\n  We conduct extensive experiments on our approach, reporting quantitative and\r\nqualitative results on both synthetic data and natural images. These show our\r\nmethod successfully learns to generate plausible and diverse textured 3D\r\nsamples for five challenging object classes."}],"language":[{"iso":"eng"}],"year":"2020","title":"Leveraging 2D data to learn textured 3D mesh generation","oa":1,"conference":{"start_date":"2020-06-14","end_date":"2020-06-19","location":"Virtual","name":"CVPR: Conference on Computer Vision and Pattern Recognition"},"day":"01"},{"article_processing_charge":"No","date_updated":"2025-05-14T11:26:57Z","publication":"34th Conference on Neural Information Processing Systems","type":"conference","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/2007.06705"}],"publication_status":"published","volume":33,"title":"Unsupervised object-centric video generation and decomposition in 3D","year":"2020","alternative_title":["Advances in Neural Information Processing Systems"],"conference":{"start_date":"2020-12-06","location":"Vancouver, Canada","end_date":"2020-12-12","name":"NeurIPS: Neural Information Processing Systems"},"day":"07","oa":1,"acknowledged_ssus":[{"_id":"ScienComp"}],"corr_author":"1","abstract":[{"lang":"eng","text":"A natural approach to generative modeling of videos is to represent them as a composition of moving objects. Recent works model a set of 2D sprites over a slowly-varying background, but without considering the underlying 3D scene that\r\ngives rise to them. We instead propose to model a video as the view seen while moving through a scene with multiple 3D objects and a 3D background. Our model is trained from monocular videos without any supervision, yet learns to\r\ngenerate coherent 3D scenes containing several moving objects. We conduct detailed experiments on two datasets, going beyond the visual complexity supported by state-of-the-art generative approaches. We evaluate our method on\r\ndepth-prediction and 3D object detection---tasks which cannot be addressed by those earlier works---and show it out-performs them even on 2D instance segmentation and tracking."}],"language":[{"iso":"eng"}],"citation":{"ieee":"P. M. Henderson and C. Lampert, “Unsupervised object-centric video generation and decomposition in 3D,” in <i>34th Conference on Neural Information Processing Systems</i>, Vancouver, Canada, 2020, vol. 33, pp. 3106–3117.","apa":"Henderson, P. M., &#38; Lampert, C. (2020). Unsupervised object-centric video generation and decomposition in 3D. In <i>34th Conference on Neural Information Processing Systems</i> (Vol. 33, pp. 3106–3117). Vancouver, Canada: Neural Information Processing Systems Foundation.","ama":"Henderson PM, Lampert C. Unsupervised object-centric video generation and decomposition in 3D. In: <i>34th Conference on Neural Information Processing Systems</i>. Vol 33. Neural Information Processing Systems Foundation; 2020:3106–3117.","chicago":"Henderson, Paul M, and Christoph Lampert. “Unsupervised Object-Centric Video Generation and Decomposition in 3D.” In <i>34th Conference on Neural Information Processing Systems</i>, 33:3106–3117. Neural Information Processing Systems Foundation, 2020.","mla":"Henderson, Paul M., and Christoph Lampert. “Unsupervised Object-Centric Video Generation and Decomposition in 3D.” <i>34th Conference on Neural Information Processing Systems</i>, vol. 33, Neural Information Processing Systems Foundation, 2020, pp. 3106–3117.","short":"P.M. Henderson, C. Lampert, in:, 34th Conference on Neural Information Processing Systems, Neural Information Processing Systems Foundation, 2020, pp. 3106–3117.","ista":"Henderson PM, Lampert C. 2020. Unsupervised object-centric video generation and decomposition in 3D. 34th Conference on Neural Information Processing Systems. NeurIPS: Neural Information Processing Systems, Advances in Neural Information Processing Systems, vol. 33, 3106–3117."},"publisher":"Neural Information Processing Systems Foundation","date_created":"2020-07-31T16:59:19Z","department":[{"_id":"ChLa"}],"page":"3106–3117","status":"public","month":"07","date_published":"2020-07-07T00:00:00Z","quality_controlled":"1","publication_identifier":{"isbn":["9781713829546"]},"intvolume":"        33","_id":"8188","author":[{"first_name":"Paul M","last_name":"Henderson","id":"13C09E74-18D9-11E9-8878-32CFE5697425","orcid":"0000-0002-5198-7445","full_name":"Henderson, Paul M"},{"id":"40C20FD2-F248-11E8-B48F-1D18A9856A87","full_name":"Lampert, Christoph","orcid":"0000-0001-8622-7887","last_name":"Lampert","first_name":"Christoph"}],"arxiv":1,"external_id":{"arxiv":["2007.06705"]},"oa_version":"Preprint","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","acknowledgement":"This research was supported by the Scientific Service Units (SSU) of IST Austria through resources\r\nprovided by Scientific Computing (SciComp). PH is employed part-time by Blackford Analysis, but\r\nthey did not support this project in any way."},{"article_type":"original","article_processing_charge":"No","scopus_import":"1","date_updated":"2025-04-24T11:53:45Z","publication":"Nano Energy","type":"journal_article","publication_status":"published","doi":"10.1016/j.nanoen.2020.105116","main_file_link":[{"url":"http://hdl.handle.net/2117/335346","open_access":"1"}],"abstract":[{"lang":"eng","text":"Direct ethanol fuel cells (DEFCs) show a huge potential to power future electric vehicles and portable electronics, but their deployment is currently limited by the unavailability of proper electrocatalysis for the ethanol oxidation reaction (EOR). In this work, we engineer a new electrocatalyst by incorporating phosphorous into a palladium-tin alloy and demonstrate a significant performance improvement toward EOR. We first detail a synthetic method to produce Pd2Sn:P nanocrystals that incorporate 35% of phosphorus. These nanoparticles are supported on carbon black and tested for EOR. Pd2Sn:P/C catalysts exhibit mass current densities up to 5.03 A mgPd−1, well above those of Pd2Sn/C, PdP2/C and Pd/C reference catalysts. Furthermore, a twofold lower Tafel slope and a much longer durability are revealed for the Pd2Sn:P/C catalyst compared with Pd/C. The performance improvement is rationalized with the aid of density functional theory (DFT) calculations considering different phosphorous chemical environments. Depending on its oxidation state, surface phosphorus introduces sites with low energy OH− adsorption and/or strongly influences the electronic structure of palladium and tin to facilitate the oxidation of the acetyl to acetic acid, which is considered the EOR rate limiting step. DFT calculations also points out that the durability improvement of Pd2Sn:P/C catalyst is associated to the promotion of OH adsorption that accelerates the oxidation of intermediate poisoning COads, reactivating the catalyst surface."}],"language":[{"iso":"eng"}],"article_number":"105116","volume":77,"title":"Phosphorous incorporation in Pd2Sn alloys for electrocatalytic ethanol oxidation","year":"2020","day":"01","OA_type":"green","oa":1,"status":"public","month":"11","publisher":"Elsevier","citation":{"ama":"Yu X, Liu J, Li J, et al. Phosphorous incorporation in Pd2Sn alloys for electrocatalytic ethanol oxidation. <i>Nano Energy</i>. 2020;77(11). doi:<a href=\"https://doi.org/10.1016/j.nanoen.2020.105116\">10.1016/j.nanoen.2020.105116</a>","ieee":"X. Yu <i>et al.</i>, “Phosphorous incorporation in Pd2Sn alloys for electrocatalytic ethanol oxidation,” <i>Nano Energy</i>, vol. 77, no. 11. Elsevier, 2020.","apa":"Yu, X., Liu, J., Li, J., Luo, Z., Zuo, Y., Xing, C., … Cabot, A. (2020). Phosphorous incorporation in Pd2Sn alloys for electrocatalytic ethanol oxidation. <i>Nano Energy</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.nanoen.2020.105116\">https://doi.org/10.1016/j.nanoen.2020.105116</a>","ista":"Yu X, Liu J, Li J, Luo Z, Zuo Y, Xing C, Llorca J, Nasiou D, Arbiol J, Pan K, Kleinhanns T, Xie Y, Cabot A. 2020. Phosphorous incorporation in Pd2Sn alloys for electrocatalytic ethanol oxidation. Nano Energy. 77(11), 105116.","short":"X. Yu, J. Liu, J. Li, Z. Luo, Y. Zuo, C. Xing, J. Llorca, D. Nasiou, J. Arbiol, K. Pan, T. Kleinhanns, Y. Xie, A. Cabot, Nano Energy 77 (2020).","mla":"Yu, Xiaoting, et al. “Phosphorous Incorporation in Pd2Sn Alloys for Electrocatalytic Ethanol Oxidation.” <i>Nano Energy</i>, vol. 77, no. 11, 105116, Elsevier, 2020, doi:<a href=\"https://doi.org/10.1016/j.nanoen.2020.105116\">10.1016/j.nanoen.2020.105116</a>.","chicago":"Yu, Xiaoting, Junfeng Liu, Junshan Li, Zhishan Luo, Yong Zuo, Congcong Xing, Jordi Llorca, et al. “Phosphorous Incorporation in Pd2Sn Alloys for Electrocatalytic Ethanol Oxidation.” <i>Nano Energy</i>. Elsevier, 2020. <a href=\"https://doi.org/10.1016/j.nanoen.2020.105116\">https://doi.org/10.1016/j.nanoen.2020.105116</a>."},"date_created":"2020-08-02T22:00:57Z","department":[{"_id":"MaIb"}],"issue":"11","publication_identifier":{"issn":["2211-2855"]},"intvolume":"        77","_id":"8189","date_published":"2020-11-01T00:00:00Z","quality_controlled":"1","oa_version":"Submitted Version","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","author":[{"first_name":"Xiaoting","last_name":"Yu","full_name":"Yu, Xiaoting"},{"full_name":"Liu, Junfeng","last_name":"Liu","first_name":"Junfeng"},{"first_name":"Junshan","last_name":"Li","full_name":"Li, Junshan"},{"full_name":"Luo, Zhishan","first_name":"Zhishan","last_name":"Luo"},{"first_name":"Yong","last_name":"Zuo","full_name":"Zuo, Yong"},{"last_name":"Xing","first_name":"Congcong","full_name":"Xing, Congcong"},{"last_name":"Llorca","first_name":"Jordi","full_name":"Llorca, Jordi"},{"full_name":"Nasiou, Déspina","first_name":"Déspina","last_name":"Nasiou"},{"first_name":"Jordi","last_name":"Arbiol","full_name":"Arbiol, Jordi"},{"full_name":"Pan, Kai","last_name":"Pan","first_name":"Kai"},{"last_name":"Kleinhanns","first_name":"Tobias","id":"8BD9DE16-AB3C-11E9-9C8C-2A03E6697425","full_name":"Kleinhanns, Tobias"},{"full_name":"Xie, Ying","last_name":"Xie","first_name":"Ying"},{"last_name":"Cabot","first_name":"Andreu","full_name":"Cabot, Andreu"}],"external_id":{"isi":["000581738300030"]},"OA_place":"repository","isi":1,"acknowledgement":"This work was supported by the European Regional Development Funds and by the Spanish Ministerio de Economía y Competitividad through the project SEHTOP, ENE2016- 77798-C4-3-R, and ENE2017-85087-C3. X. Y. thanks the China Scholarship Council for the scholarship support. J. Liu acknowledges support from the Jiangsu University Foundation (4111510011). J. Li obtained International Postdoctoral Exchange Fellowship Program (Talent-Introduction program) in 2019 and is grateful for the project (2019M663468) funded by the China Postdoctoral Science Foundation. Authors acknowledge funding from Generalitat de Catalunya 2017 SGR 327 and 2017 SGR 1246, and from IST Austria. ICN2 acknowledges the support from the Severo Ochoa Programme (MINECO, grant no. SEV-2017-0706) and is funded by the CERCA Programme/Generalitat de Catalunya. J. Llorca is a Serra Húnter Fellow and is grateful to MICINN/FEDER RTI2018-093996-B-C31, GC 2017 SGR 128 and to ICREA Academia program."},{"date_created":"2020-08-02T22:00:58Z","department":[{"_id":"DaAl"}],"publisher":"Association for Computing Machinery","citation":{"chicago":"Alistarh, Dan-Adrian, Trevor A Brown, and Nandini Singhal. “Memory Tagging: Minimalist Synchronization for Scalable Concurrent Data Structures.” In <i>Annual ACM Symposium on Parallelism in Algorithms and Architectures</i>, 37–49. Association for Computing Machinery, 2020. <a href=\"https://doi.org/10.1145/3350755.3400213\">https://doi.org/10.1145/3350755.3400213</a>.","ista":"Alistarh D-A, Brown TA, Singhal N. 2020. Memory tagging: Minimalist synchronization for scalable concurrent data structures. Annual ACM Symposium on Parallelism in Algorithms and Architectures. SPAA: Symposium on Parallelism in Algorithms and Architectures, 37–49.","mla":"Alistarh, Dan-Adrian, et al. “Memory Tagging: Minimalist Synchronization for Scalable Concurrent Data Structures.” <i>Annual ACM Symposium on Parallelism in Algorithms and Architectures</i>, no. 7, Association for Computing Machinery, 2020, pp. 37–49, doi:<a href=\"https://doi.org/10.1145/3350755.3400213\">10.1145/3350755.3400213</a>.","short":"D.-A. Alistarh, T.A. Brown, N. Singhal, in:, Annual ACM Symposium on Parallelism in Algorithms and Architectures, Association for Computing Machinery, 2020, pp. 37–49.","ieee":"D.-A. Alistarh, T. A. Brown, and N. Singhal, “Memory tagging: Minimalist synchronization for scalable concurrent data structures,” in <i>Annual ACM Symposium on Parallelism in Algorithms and Architectures</i>, Virtual Event, United States, 2020, no. 7, pp. 37–49.","apa":"Alistarh, D.-A., Brown, T. A., &#38; Singhal, N. (2020). Memory tagging: Minimalist synchronization for scalable concurrent data structures. In <i>Annual ACM Symposium on Parallelism in Algorithms and Architectures</i> (pp. 37–49). Virtual Event, United States: Association for Computing Machinery. <a href=\"https://doi.org/10.1145/3350755.3400213\">https://doi.org/10.1145/3350755.3400213</a>","ama":"Alistarh D-A, Brown TA, Singhal N. Memory tagging: Minimalist synchronization for scalable concurrent data structures. In: <i>Annual ACM Symposium on Parallelism in Algorithms and Architectures</i>. Association for Computing Machinery; 2020:37-49. doi:<a href=\"https://doi.org/10.1145/3350755.3400213\">10.1145/3350755.3400213</a>"},"month":"07","article_processing_charge":"No","status":"public","page":"37-49","type":"conference","publication":"Annual ACM Symposium on Parallelism in Algorithms and Architectures","quality_controlled":"1","date_updated":"2024-02-28T12:56:32Z","date_published":"2020-07-06T00:00:00Z","_id":"8191","issue":"7","publication_identifier":{"isbn":["9781450369350"]},"scopus_import":"1","isi":1,"external_id":{"isi":["000744436200004"]},"author":[{"last_name":"Alistarh","first_name":"Dan-Adrian","id":"4A899BFC-F248-11E8-B48F-1D18A9856A87","full_name":"Alistarh, Dan-Adrian","orcid":"0000-0003-3650-940X"},{"last_name":"Brown","first_name":"Trevor A","id":"3569F0A0-F248-11E8-B48F-1D18A9856A87","full_name":"Brown, Trevor A"},{"full_name":"Singhal, Nandini","first_name":"Nandini","last_name":"Singhal"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.1145/3350755.3400213","oa_version":"None","publication_status":"published","conference":{"name":"SPAA: Symposium on Parallelism in Algorithms and Architectures","location":"Virtual Event, United States","end_date":"2020-07-17","start_date":"2020-07-15"},"day":"06","year":"2020","title":"Memory tagging: Minimalist synchronization for scalable concurrent data structures","language":[{"iso":"eng"}],"abstract":[{"lang":"eng","text":"There has been a significant amount of research on hardware and software support for efficient concurrent data structures; yet, the question of how to build correct, simple, and scalable data structures has not yet been definitively settled. In this paper, we revisit this question from a minimalist perspective, and ask: what is the smallest amount of synchronization required for correct and efficient concurrent search data structures, and how could this minimal synchronization support be provided in hardware?\r\n\r\nTo address these questions, we introduce memory tagging, a simple hardware mechanism which enables the programmer to \"tag\" a dynamic set of memory locations, at cache-line granularity, and later validate whether the memory has been concurrently modified, with the possibility of updating one of the underlying locations atomically if validation succeeds. We provide several examples showing that this mechanism can enable fast and arguably simple concurrent data structure designs, such as lists, binary search trees, balanced search trees, range queries, and Software Transactional Memory (STM) implementations. We provide an implementation of memory tags in the Graphite multi-core simulator, showing that the mechanism can be implemented entirely at the level of L1 cache, and that it can enable non-trivial speedups versus existing implementations of the above data structures."}]},{"ddc":["530"],"scopus_import":"1","date_updated":"2025-04-14T07:44:05Z","type":"journal_article","publication":"SciPost Physics","article_type":"original","article_processing_charge":"No","abstract":[{"lang":"eng","text":"We investigate a mechanism to transiently stabilize topological phenomena in long-lived quasi-steady states of isolated quantum many-body systems driven at low frequencies. We obtain an analytical bound for the lifetime of the quasi-steady states which is exponentially large in the inverse driving frequency. Within this lifetime, the quasi-steady state is characterized by maximum entropy subject to the constraint of fixed number of particles in the system's Floquet-Bloch bands. In such a state, all the non-universal properties of these bands are washed out, hence only the topological properties persist."}],"corr_author":"1","language":[{"iso":"eng"}],"article_number":"015","volume":9,"title":"Exponentially long lifetime of universal quasi-steady states in topological Floquet pumps","year":"2020","day":"29","oa":1,"publication_status":"published","doi":"10.21468/scipostphys.9.1.015","ec_funded":1,"file_date_updated":"2020-08-06T08:56:06Z","publication_identifier":{"issn":["2542-4653"]},"intvolume":"         9","_id":"8199","date_published":"2020-07-29T00:00:00Z","quality_controlled":"1","project":[{"call_identifier":"H2020","_id":"260C2330-B435-11E9-9278-68D0E5697425","name":"ISTplus - Postdoctoral Fellowships","grant_number":"754411"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"status":"public","month":"07","citation":{"mla":"Gulden, Tobias, et al. “Exponentially Long Lifetime of Universal Quasi-Steady States in Topological Floquet Pumps.” <i>SciPost Physics</i>, vol. 9, 015, SciPost Foundation, 2020, doi:<a href=\"https://doi.org/10.21468/scipostphys.9.1.015\">10.21468/scipostphys.9.1.015</a>.","short":"T. Gulden, E. Berg, M.S. Rudner, N. Lindner, SciPost Physics 9 (2020).","ista":"Gulden T, Berg E, Rudner MS, Lindner N. 2020. Exponentially long lifetime of universal quasi-steady states in topological Floquet pumps. SciPost Physics. 9, 015.","chicago":"Gulden, Tobias, Erez Berg, Mark Spencer Rudner, and Netanel Lindner. “Exponentially Long Lifetime of Universal Quasi-Steady States in Topological Floquet Pumps.” <i>SciPost Physics</i>. SciPost Foundation, 2020. <a href=\"https://doi.org/10.21468/scipostphys.9.1.015\">https://doi.org/10.21468/scipostphys.9.1.015</a>.","ama":"Gulden T, Berg E, Rudner MS, Lindner N. Exponentially long lifetime of universal quasi-steady states in topological Floquet pumps. <i>SciPost Physics</i>. 2020;9. doi:<a href=\"https://doi.org/10.21468/scipostphys.9.1.015\">10.21468/scipostphys.9.1.015</a>","ieee":"T. Gulden, E. Berg, M. S. Rudner, and N. Lindner, “Exponentially long lifetime of universal quasi-steady states in topological Floquet pumps,” <i>SciPost Physics</i>, vol. 9. SciPost Foundation, 2020.","apa":"Gulden, T., Berg, E., Rudner, M. S., &#38; Lindner, N. (2020). Exponentially long lifetime of universal quasi-steady states in topological Floquet pumps. <i>SciPost Physics</i>. SciPost Foundation. <a href=\"https://doi.org/10.21468/scipostphys.9.1.015\">https://doi.org/10.21468/scipostphys.9.1.015</a>"},"publisher":"SciPost Foundation","date_created":"2020-08-04T13:04:15Z","department":[{"_id":"MaSe"}],"has_accepted_license":"1","acknowledgement":"N.L., T.G. and E.B. acknowledge support from the European Research Council (ERC) under\r\nthe European Union Horizon 2020 Research and Innovation Programme (Grant Agreement\r\nNo. 639172). T.G. was in part supported by an Aly Kaufman Fellowship at the Technion. T.G.\r\nacknowledges funding from the Institute of Science and Technology (IST) Austria, and from\r\nthe European Union’s Horizon 2020 research and innovation programme under the Marie\r\nSkłodowska-Curie Grant Agreement No. 754411. N.L. acknowledges support from the People Programme (Marie Curie Actions) of the European Unions Seventh Framework 546 Programme (FP7/20072013), under REA Grant Agreement No. 631696, and by the Israeli Center\r\nof Research Excellence (I-CORE) Circle of Light funded by the Israel Science Foundation (Grant\r\nNo. 1802/12). M.R. gratefully acknowledges the support of the European Research Council\r\n(ERC) under the European Union Horizon 2020 Research and Innovation Programme (Grant\r\nAgreement No. 678862). M.R. acknowledges the support of the Villum Foundation. M.R. and\r\nE.B. acknowledge support from CRC 183 of the Deutsche Forschungsgemeinschaft","file":[{"date_created":"2020-08-06T08:56:06Z","access_level":"open_access","relation":"main_file","file_name":"2020_SciPostPhys_Gulden.pdf","file_size":531137,"success":1,"file_id":"8202","date_updated":"2020-08-06T08:56:06Z","creator":"dernst","content_type":"application/pdf"}],"oa_version":"Published Version","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","author":[{"last_name":"Gulden","first_name":"Tobias","orcid":"0000-0001-6814-7541","id":"1083E038-9F73-11E9-A4B5-532AE6697425","full_name":"Gulden, Tobias"},{"first_name":"Erez","last_name":"Berg","full_name":"Berg, Erez"},{"last_name":"Rudner","first_name":"Mark Spencer","full_name":"Rudner, Mark Spencer"},{"full_name":"Lindner, Netanel","first_name":"Netanel","last_name":"Lindner"}],"external_id":{"isi":["000557362300008"]},"isi":1},{"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"page":"5201-5206","month":"06","status":"public","publisher":"American Chemical Society","citation":{"ama":"Katsaros G, Kukucka J, Vukušić L, et al. Zero field splitting of heavy-hole states in quantum dots. <i>Nano Letters</i>. 2020;20(7):5201-5206. doi:<a href=\"https://doi.org/10.1021/acs.nanolett.0c01466\">10.1021/acs.nanolett.0c01466</a>","ieee":"G. Katsaros <i>et al.</i>, “Zero field splitting of heavy-hole states in quantum dots,” <i>Nano Letters</i>, vol. 20, no. 7. American Chemical Society, pp. 5201–5206, 2020.","apa":"Katsaros, G., Kukucka, J., Vukušić, L., Watzinger, H., Gao, F., Wang, T., … Held, K. (2020). Zero field splitting of heavy-hole states in quantum dots. <i>Nano Letters</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/acs.nanolett.0c01466\">https://doi.org/10.1021/acs.nanolett.0c01466</a>","chicago":"Katsaros, Georgios, Josip Kukucka, Lada Vukušić, Hannes Watzinger, Fei Gao, Ting Wang, Jian-Jun Zhang, and Karsten Held. “Zero Field Splitting of Heavy-Hole States in Quantum Dots.” <i>Nano Letters</i>. American Chemical Society, 2020. <a href=\"https://doi.org/10.1021/acs.nanolett.0c01466\">https://doi.org/10.1021/acs.nanolett.0c01466</a>.","ista":"Katsaros G, Kukucka J, Vukušić L, Watzinger H, Gao F, Wang T, Zhang J-J, Held K. 2020. Zero field splitting of heavy-hole states in quantum dots. Nano Letters. 20(7), 5201–5206.","short":"G. Katsaros, J. Kukucka, L. Vukušić, H. Watzinger, F. Gao, T. Wang, J.-J. Zhang, K. Held, Nano Letters 20 (2020) 5201–5206.","mla":"Katsaros, Georgios, et al. “Zero Field Splitting of Heavy-Hole States in Quantum Dots.” <i>Nano Letters</i>, vol. 20, no. 7, American Chemical Society, 2020, pp. 5201–06, doi:<a href=\"https://doi.org/10.1021/acs.nanolett.0c01466\">10.1021/acs.nanolett.0c01466</a>."},"date_created":"2020-08-06T09:25:04Z","department":[{"_id":"GeKa"}],"_id":"8203","publication_identifier":{"issn":["1530-6984"],"eissn":["1530-6992"]},"intvolume":"        20","issue":"7","date_published":"2020-06-01T00:00:00Z","project":[{"name":"Towards scalable hut wire quantum devices","_id":"237B3DA4-32DE-11EA-91FC-C7463DDC885E","call_identifier":"FWF","grant_number":"P32235"},{"grant_number":"862046","name":"TOPOLOGICALLY PROTECTED AND SCALABLE QUANTUM BITS","_id":"237E5020-32DE-11EA-91FC-C7463DDC885E","call_identifier":"H2020"}],"quality_controlled":"1","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","related_material":{"record":[{"relation":"research_data","status":"public","id":"7689"}]},"oa_version":"Published Version","external_id":{"pmid":["32479090"],"isi":["000548893200066"]},"author":[{"full_name":"Katsaros, Georgios","id":"38DB5788-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8342-202X","last_name":"Katsaros","first_name":"Georgios"},{"first_name":"Josip","last_name":"Kukucka","full_name":"Kukucka, Josip","id":"3F5D8856-F248-11E8-B48F-1D18A9856A87"},{"orcid":"0000-0003-2424-8636","id":"31E9F056-F248-11E8-B48F-1D18A9856A87","full_name":"Vukušić, Lada","last_name":"Vukušić","first_name":"Lada"},{"id":"35DF8E50-F248-11E8-B48F-1D18A9856A87","full_name":"Watzinger, Hannes","last_name":"Watzinger","first_name":"Hannes"},{"full_name":"Gao, Fei","last_name":"Gao","first_name":"Fei"},{"last_name":"Wang","first_name":"Ting","orcid":"0000-0002-4619-9575","full_name":"Wang, Ting"},{"full_name":"Zhang, Jian-Jun","last_name":"Zhang","first_name":"Jian-Jun"},{"first_name":"Karsten","last_name":"Held","full_name":"Held, Karsten"}],"pmid":1,"isi":1,"file":[{"creator":"dernst","content_type":"application/pdf","date_updated":"2020-08-06T09:35:37Z","file_id":"8204","file_name":"2020_NanoLetters_Katsaros.pdf","success":1,"file_size":3308906,"date_created":"2020-08-06T09:35:37Z","access_level":"open_access","relation":"main_file"}],"has_accepted_license":"1","acknowledgement":"We acknowledge G. Burkard, V. N. Golovach, C. Kloeffel, D.Loss, P. Rabl, and M. Rancič ́ for helpful discussions. We\r\nfurther acknowledge T. Adletzberger, J. Aguilera, T. Asenov, S. Bagiante, T. Menner, L. Shafeek, P. Taus, P. Traunmüller, and D. Waldhausl for their invaluable assistance. This research was supported by the Scientific Service Units of IST Austria through resources provided by the MIBA Machine Shop and the nanofabrication facility, by the FWF-P 32235 project, by the National Key R&D Program of China (2016YFA0301701, 2016YFA0300600), and by the European Union’s Horizon 2020 research and innovation program under grant agreement no. 862046. All data of this publication are available at 10.15479/AT:ISTA:7689.","article_type":"original","article_processing_charge":"Yes (via OA deal)","scopus_import":"1","ddc":["530"],"type":"journal_article","publication":"Nano Letters","date_updated":"2025-04-15T08:39:16Z","publication_status":"published","doi":"10.1021/acs.nanolett.0c01466","ec_funded":1,"file_date_updated":"2020-08-06T09:35:37Z","abstract":[{"text":"Using inelastic cotunneling spectroscopy we observe a zero field splitting within the spin triplet manifold of Ge hut wire quantum dots. The states with spin ±1 in the confinement direction are energetically favored by up to 55 μeV compared to the spin 0 triplet state because of the strong spin–orbit coupling. The reported effect should be observable in a broad class of strongly confined hole quantum-dot systems and might need to be considered when operating hole spin qubits.","lang":"eng"}],"corr_author":"1","acknowledged_ssus":[{"_id":"NanoFab"},{"_id":"M-Shop"}],"language":[{"iso":"eng"}],"year":"2020","volume":20,"title":"Zero field splitting of heavy-hole states in quantum dots","oa":1,"day":"01"},{"OA_place":"publisher","external_id":{"pmid":["32784509"]},"DOAJ_listed":"1","pmid":1,"author":[{"last_name":"Köhler","first_name":"Verena K.","orcid":"0000-0001-5581-398X","full_name":"Köhler, Verena K."},{"full_name":"Crescioli, Silvia","orcid":"0000-0002-1909-5957","first_name":"Silvia","last_name":"Crescioli"},{"full_name":"Fazekas-Singer, Judit","orcid":"0000-0002-8777-3502","id":"36432834-F248-11E8-B48F-1D18A9856A87","last_name":"Fazekas-Singer","first_name":"Judit"},{"full_name":"Bax, Heather J.","orcid":"0000-0003-0432-4160","last_name":"Bax","first_name":"Heather J."},{"full_name":"Hofer, Gerhard","first_name":"Gerhard","last_name":"Hofer"},{"first_name":"Christina L.","last_name":"Pranger","full_name":"Pranger, Christina L."},{"first_name":"Karin","last_name":"Hufnagl","full_name":"Hufnagl, Karin"},{"last_name":"Bianchini","first_name":"Rodolfo","orcid":"0000-0003-0351-6937","full_name":"Bianchini, Rodolfo"},{"full_name":"Flicker, Sabine","orcid":"0000-0003-4768-8693","last_name":"Flicker","first_name":"Sabine"},{"first_name":"Walter","last_name":"Keller","orcid":"0000-0002-2261-958X","full_name":"Keller, Walter"},{"last_name":"Karagiannis","first_name":"Sophia N.","orcid":"0000-0002-4100-7810","full_name":"Karagiannis, Sophia N."},{"first_name":"Erika","last_name":"Jensen-Jarolim","full_name":"Jensen-Jarolim, Erika","orcid":"0000-0003-4019-5765"}],"user_id":"0043cee0-e5fc-11ee-9736-f83bc23afbf0","oa_version":"Published Version","file":[{"file_name":"2020_IntMolecSciences_Koehler.pdf","checksum":"dac7ccef7cdcea9be292664d8c488425","success":1,"file_size":2680908,"access_level":"open_access","relation":"main_file","date_created":"2020-09-10T07:06:22Z","content_type":"application/pdf","creator":"dernst","date_updated":"2020-09-10T07:06:22Z","file_id":"8356"}],"has_accepted_license":"1","date_created":"2020-08-10T11:47:29Z","publisher":"MDPI","citation":{"chicago":"Köhler, Verena K., Silvia Crescioli, Judit Singer, Heather J. Bax, Gerhard Hofer, Christina L. Pranger, Karin Hufnagl, et al. “Filling the Antibody Pipeline in Allergy: PIPE Cloning of IgE, IgG1 and IgG4 against the Major Birch Pollen Allergen Bet v 1.” <i>International Journal of Molecular Sciences</i>. MDPI, 2020. <a href=\"https://doi.org/10.3390/ijms21165693\">https://doi.org/10.3390/ijms21165693</a>.","ista":"Köhler VK, Crescioli S, Singer J, Bax HJ, Hofer G, Pranger CL, Hufnagl K, Bianchini R, Flicker S, Keller W, Karagiannis SN, Jensen-Jarolim E. 2020. Filling the antibody pipeline in allergy: PIPE cloning of IgE, IgG1 and IgG4 against the major birch pollen allergen Bet v 1. International Journal of Molecular Sciences. 21(16), 5693.","mla":"Köhler, Verena K., et al. “Filling the Antibody Pipeline in Allergy: PIPE Cloning of IgE, IgG1 and IgG4 against the Major Birch Pollen Allergen Bet v 1.” <i>International Journal of Molecular Sciences</i>, vol. 21, no. 16, 5693, MDPI, 2020, doi:<a href=\"https://doi.org/10.3390/ijms21165693\">10.3390/ijms21165693</a>.","short":"V.K. Köhler, S. Crescioli, J. Singer, H.J. Bax, G. Hofer, C.L. Pranger, K. Hufnagl, R. Bianchini, S. Flicker, W. Keller, S.N. Karagiannis, E. Jensen-Jarolim, International Journal of Molecular Sciences 21 (2020).","ieee":"V. K. Köhler <i>et al.</i>, “Filling the antibody pipeline in allergy: PIPE cloning of IgE, IgG1 and IgG4 against the major birch pollen allergen Bet v 1,” <i>International Journal of Molecular Sciences</i>, vol. 21, no. 16. MDPI, 2020.","apa":"Köhler, V. K., Crescioli, S., Singer, J., Bax, H. J., Hofer, G., Pranger, C. L., … Jensen-Jarolim, E. (2020). Filling the antibody pipeline in allergy: PIPE cloning of IgE, IgG1 and IgG4 against the major birch pollen allergen Bet v 1. <i>International Journal of Molecular Sciences</i>. MDPI. <a href=\"https://doi.org/10.3390/ijms21165693\">https://doi.org/10.3390/ijms21165693</a>","ama":"Köhler VK, Crescioli S, Singer J, et al. Filling the antibody pipeline in allergy: PIPE cloning of IgE, IgG1 and IgG4 against the major birch pollen allergen Bet v 1. <i>International Journal of Molecular Sciences</i>. 2020;21(16). doi:<a href=\"https://doi.org/10.3390/ijms21165693\">10.3390/ijms21165693</a>"},"month":"08","status":"public","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"quality_controlled":"1","date_published":"2020-08-08T00:00:00Z","_id":"8225","issue":"16","publication_identifier":{"issn":["1422-0067"]},"intvolume":"        21","file_date_updated":"2020-09-10T07:06:22Z","doi":"10.3390/ijms21165693","publication_status":"published","oa":1,"extern":"1","day":"08","OA_type":"gold","year":"2020","title":"Filling the antibody pipeline in allergy: PIPE cloning of IgE, IgG1 and IgG4 against the major birch pollen allergen Bet v 1","volume":21,"language":[{"iso":"eng"}],"article_number":"5693","abstract":[{"lang":"eng","text":"Birch pollen allergy is among the most prevalent pollen allergies in Northern and Central Europe. This IgE-mediated disease can be treated with allergen immunotherapy (AIT), which typically gives rise to IgG antibodies inducing tolerance. Although the main mechanisms of allergen immunotherapy (AIT) are known, questions regarding possible Fc-mediated effects of IgG antibodies remain unanswered. This can mainly be attributed to the unavailability of appropriate tools, i.e., well-characterised recombinant antibodies (rAbs). We hereby aimed at providing human rAbs of several classes for mechanistic studies and as possible candidates for passive immunotherapy. We engineered IgE, IgG1, and IgG4 sharing the same variable region against the major birch pollen allergen Bet v 1 using Polymerase Incomplete Primer Extension (PIPE) cloning. We tested IgE functionality and IgG blocking capabilities using appropriate model cell lines. In vitro studies showed IgE engagement with FcεRI and CD23 and Bet v 1-dependent degranulation. Overall, we hereby present fully functional, human IgE, IgG1, and IgG4 sharing the same variable region against Bet v 1 and showcase possible applications in first mechanistic studies. Furthermore, our IgG antibodies might be useful candidates for passive immunotherapy of birch pollen allergy."}],"article_processing_charge":"No","article_type":"original","type":"journal_article","publication":"International Journal of Molecular Sciences","date_updated":"2024-10-15T13:11:23Z","ddc":["570"]},{"_id":"8226","publication_identifier":{"issn":["0105-4538","1398-9995"]},"date_published":"2020-04-04T00:00:00Z","publication":"Allergy","type":"journal_article","quality_controlled":"1","date_updated":"2024-10-15T13:13:56Z","article_type":"letter_note","article_processing_charge":"No","month":"04","status":"public","citation":{"chicago":"Gotovina, Jelena, Rodolfo Bianchini, Judit Singer, Ina Herrmann, Giulia Pellizzari, Ian D. Haidl, Karin Hufnagl, Sophia N. Karagiannis, Jean S. Marshall, and Erika Jensen‐Jarolim. “Epinephrine Drives Human M2a Allergic Macrophages to a Regulatory Phenotype Reducing Mast Cell Degranulation in Vitro.” <i>Allergy</i>. Wiley, 2020. <a href=\"https://doi.org/10.1111/all.14299\">https://doi.org/10.1111/all.14299</a>.","ista":"Gotovina J, Bianchini R, Singer J, Herrmann I, Pellizzari G, Haidl ID, Hufnagl K, Karagiannis SN, Marshall JS, Jensen‐Jarolim E. 2020. Epinephrine drives human M2a allergic macrophages to a regulatory phenotype reducing mast cell degranulation in vitro. Allergy.","short":"J. Gotovina, R. Bianchini, J. Singer, I. Herrmann, G. Pellizzari, I.D. Haidl, K. Hufnagl, S.N. Karagiannis, J.S. Marshall, E. Jensen‐Jarolim, Allergy (2020).","mla":"Gotovina, Jelena, et al. “Epinephrine Drives Human M2a Allergic Macrophages to a Regulatory Phenotype Reducing Mast Cell Degranulation in Vitro.” <i>Allergy</i>, Wiley, 2020, doi:<a href=\"https://doi.org/10.1111/all.14299\">10.1111/all.14299</a>.","apa":"Gotovina, J., Bianchini, R., Singer, J., Herrmann, I., Pellizzari, G., Haidl, I. D., … Jensen‐Jarolim, E. (2020). Epinephrine drives human M2a allergic macrophages to a regulatory phenotype reducing mast cell degranulation in vitro. <i>Allergy</i>. Wiley. <a href=\"https://doi.org/10.1111/all.14299\">https://doi.org/10.1111/all.14299</a>","ieee":"J. Gotovina <i>et al.</i>, “Epinephrine drives human M2a allergic macrophages to a regulatory phenotype reducing mast cell degranulation in vitro,” <i>Allergy</i>. Wiley, 2020.","ama":"Gotovina J, Bianchini R, Singer J, et al. Epinephrine drives human M2a allergic macrophages to a regulatory phenotype reducing mast cell degranulation in vitro. <i>Allergy</i>. 2020. doi:<a href=\"https://doi.org/10.1111/all.14299\">10.1111/all.14299</a>"},"publisher":"Wiley","date_created":"2020-08-10T11:50:30Z","language":[{"iso":"eng"}],"year":"2020","title":"Epinephrine drives human M2a allergic macrophages to a regulatory phenotype reducing mast cell degranulation in vitro","extern":"1","oa":1,"day":"04","OA_type":"hybrid","publication_status":"epub_ahead","doi":"10.1111/all.14299","user_id":"0043cee0-e5fc-11ee-9736-f83bc23afbf0","oa_version":"Published Version","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1111/all.14299"}],"author":[{"full_name":"Gotovina, Jelena","orcid":"0000-0003-1503-5276","last_name":"Gotovina","first_name":"Jelena"},{"last_name":"Bianchini","first_name":"Rodolfo","orcid":"0000-0003-0351-6937","full_name":"Bianchini, Rodolfo"},{"id":"36432834-F248-11E8-B48F-1D18A9856A87","full_name":"Fazekas-Singer, Judit","orcid":"0000-0002-8777-3502","first_name":"Judit","last_name":"Fazekas-Singer"},{"first_name":"Ina","last_name":"Herrmann","orcid":"0000-0003-2772-9144","full_name":"Herrmann, Ina"},{"first_name":"Giulia","last_name":"Pellizzari","orcid":"0000-0003-0387-1912","full_name":"Pellizzari, Giulia"},{"last_name":"Haidl","first_name":"Ian D.","orcid":"0000-0002-5301-0822","full_name":"Haidl, Ian D."},{"last_name":"Hufnagl","first_name":"Karin","full_name":"Hufnagl, Karin","orcid":"0000-0002-2288-2468"},{"first_name":"Sophia N.","last_name":"Karagiannis","full_name":"Karagiannis, Sophia N.","orcid":"0000-0002-4100-7810"},{"first_name":"Jean S.","last_name":"Marshall","orcid":"0000-0002-5642-1379","full_name":"Marshall, Jean S."},{"first_name":"Erika","last_name":"Jensen‐Jarolim","orcid":"0000-0003-4019-5765","full_name":"Jensen‐Jarolim, Erika"}],"OA_place":"publisher"},{"doi":"10.15479/AT:ISTA:8254","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","related_material":{"record":[{"relation":"later_version","id":"9192","status":"public"},{"relation":"later_version","status":"public","id":"11321"}]},"oa_version":"Published Version","file_date_updated":"2020-08-18T08:03:23Z","author":[{"last_name":"Arathoon","first_name":"Louise S","full_name":"Arathoon, Louise S","id":"2CFCFF98-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-1771-714X"}],"corr_author":"1","file":[{"content_type":"application/x-zip-compressed","creator":"dernst","file_id":"8280","date_updated":"2020-08-18T08:03:23Z","file_name":"Data_Rcode_MathematicaNB.zip","file_size":5778420,"checksum":"4f1382ed4384751b6013398c11557bf6","success":1,"access_level":"open_access","relation":"main_file","date_created":"2020-08-18T08:03:23Z"}],"abstract":[{"text":"Here are the research data underlying the publication \"Estimating inbreeding and its effects in a long-term study of snapdragons (Antirrhinum majus)\". Further information are summed up in the README document.\r\nThe files for this record have been updated and are now found in the linked DOI https://doi.org/10.15479/AT:ISTA:9192.","lang":"eng"}],"has_accepted_license":"1","oa":1,"day":"18","year":"2020","title":"Estimating inbreeding and its effects in a long-term study of snapdragons (Antirrhinum majus)","article_processing_charge":"No","month":"08","status":"public","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"date_created":"2020-08-12T12:49:23Z","department":[{"_id":"NiBa"}],"publisher":"Institute of Science and Technology Austria","citation":{"short":"L.S. Arathoon, (2020).","mla":"Arathoon, Louise S. <i>Estimating Inbreeding and Its Effects in a Long-Term Study of Snapdragons (Antirrhinum Majus)</i>. Institute of Science and Technology Austria, 2020, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:8254\">10.15479/AT:ISTA:8254</a>.","ista":"Arathoon LS. 2020. Estimating inbreeding and its effects in a long-term study of snapdragons (Antirrhinum majus), Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:8254\">10.15479/AT:ISTA:8254</a>.","chicago":"Arathoon, Louise S. “Estimating Inbreeding and Its Effects in a Long-Term Study of Snapdragons (Antirrhinum Majus).” Institute of Science and Technology Austria, 2020. <a href=\"https://doi.org/10.15479/AT:ISTA:8254\">https://doi.org/10.15479/AT:ISTA:8254</a>.","ieee":"L. S. Arathoon, “Estimating inbreeding and its effects in a long-term study of snapdragons (Antirrhinum majus).” Institute of Science and Technology Austria, 2020.","ama":"Arathoon LS. Estimating inbreeding and its effects in a long-term study of snapdragons (Antirrhinum majus). 2020. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:8254\">10.15479/AT:ISTA:8254</a>","apa":"Arathoon, L. S. (2020). Estimating inbreeding and its effects in a long-term study of snapdragons (Antirrhinum majus). Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:8254\">https://doi.org/10.15479/AT:ISTA:8254</a>"},"_id":"8254","ddc":["576"],"type":"research_data","date_updated":"2024-10-09T21:02:14Z","contributor":[{"first_name":"Louise S","last_name":"Arathoon","id":"2CFCFF98-F248-11E8-B48F-1D18A9856A87","contributor_type":"data_collector"},{"last_name":"Surendranadh","first_name":"Parvathy","contributor_type":"project_member","id":"455235B8-F248-11E8-B48F-1D18A9856A87"},{"contributor_type":"project_member","orcid":"0000-0002-8548-5240","id":"4880FE40-F248-11E8-B48F-1D18A9856A87","last_name":"Barton","first_name":"Nicholas H"},{"contributor_type":"project_member","id":"419049E2-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4014-8478","last_name":"Field","first_name":"David"},{"first_name":"Melinda","last_name":"Pickup","id":"2C78037E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6118-0541","contributor_type":"project_member"},{"id":"3B4A7CE2-F248-11E8-B48F-1D18A9856A87","contributor_type":"project_member","first_name":"Carina","last_name":"Baskett"}],"date_published":"2020-08-18T00:00:00Z"},{"acknowledgement":"This project has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation program (grant agreement 692692, P.J.) and the Fond zur Förderung der Wissenschaftlichen Forschung (Z 312-B27, Wittgenstein award, P.J.). We thank Gyorgy Buzsáki, Jozsef Csicsvari, Juan Ramirez Villegas, and Federico Stella for commenting on earlier versions of this manuscript. We also thank Katie Bittner, Michael Brecht, Albert Lee, Jeffery Magee, and Alejandro Pernía-Andrade for sharing expertise in in vivo patch-clamp recording. We are grateful to Florian Marr for cell labeling, cell reconstruction, and technical assistance; Ben Suter for helpful discussions; Christina Altmutter for technical support; Eleftheria Kralli-Beller for manuscript editing; and Todor Asenov (Machine Shop) for device construction. We also thank the Scientific Service Units (SSUs) of IST Austria (Machine Shop, Scientific Computing, and Preclinical Facility) for efficient support.","has_accepted_license":"1","file":[{"creator":"dernst","content_type":"application/pdf","file_id":"8920","date_updated":"2020-12-04T09:29:21Z","success":1,"file_size":3011120,"checksum":"44a5960fc083a4cb3488d22224859fdc","file_name":"2020_Neuron_Zhang.pdf","date_created":"2020-12-04T09:29:21Z","relation":"main_file","access_level":"open_access"}],"author":[{"full_name":"Zhang, Xiaomin","id":"423EC9C2-F248-11E8-B48F-1D18A9856A87","first_name":"Xiaomin","last_name":"Zhang"},{"first_name":"Alois","last_name":"Schlögl","full_name":"Schlögl, Alois","id":"45BF87EE-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-5621-8100"},{"id":"353C1B58-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5001-4804","full_name":"Jonas, Peter M","last_name":"Jonas","first_name":"Peter M"}],"pmid":1,"external_id":{"pmid":["32763145"],"isi":["000579698700009"]},"isi":1,"oa_version":"Published Version","related_material":{"link":[{"relation":"press_release","description":"News on IST Website","url":"https://ist.ac.at/en/news/the-bouncer-in-the-brain/"}]},"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","date_published":"2020-09-23T00:00:00Z","quality_controlled":"1","project":[{"name":"Biophysics and circuit function of a giant cortical glutamatergic synapse","_id":"25B7EB9E-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","grant_number":"692692"},{"name":"Synaptic communication in neuronal microcircuits","_id":"25C5A090-B435-11E9-9278-68D0E5697425","call_identifier":"FWF","grant_number":"Z00312"}],"intvolume":"       107","issue":"6","publication_identifier":{"issn":["0896-6273"]},"_id":"8261","citation":{"ista":"Zhang X, Schlögl A, Jonas PM. 2020. Selective routing of spatial information flow from input to output in hippocampal granule cells. Neuron. 107(6), 1212–1225.","mla":"Zhang, Xiaomin, et al. “Selective Routing of Spatial Information Flow from Input to Output in Hippocampal Granule Cells.” <i>Neuron</i>, vol. 107, no. 6, Elsevier, 2020, pp. 1212–25, doi:<a href=\"https://doi.org/10.1016/j.neuron.2020.07.006\">10.1016/j.neuron.2020.07.006</a>.","short":"X. Zhang, A. Schlögl, P.M. Jonas, Neuron 107 (2020) 1212–1225.","chicago":"Zhang, Xiaomin, Alois Schlögl, and Peter M Jonas. “Selective Routing of Spatial Information Flow from Input to Output in Hippocampal Granule Cells.” <i>Neuron</i>. Elsevier, 2020. <a href=\"https://doi.org/10.1016/j.neuron.2020.07.006\">https://doi.org/10.1016/j.neuron.2020.07.006</a>.","ieee":"X. Zhang, A. Schlögl, and P. M. Jonas, “Selective routing of spatial information flow from input to output in hippocampal granule cells,” <i>Neuron</i>, vol. 107, no. 6. Elsevier, pp. 1212–1225, 2020.","ama":"Zhang X, Schlögl A, Jonas PM. Selective routing of spatial information flow from input to output in hippocampal granule cells. <i>Neuron</i>. 2020;107(6):1212-1225. doi:<a href=\"https://doi.org/10.1016/j.neuron.2020.07.006\">10.1016/j.neuron.2020.07.006</a>","apa":"Zhang, X., Schlögl, A., &#38; Jonas, P. M. (2020). Selective routing of spatial information flow from input to output in hippocampal granule cells. <i>Neuron</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.neuron.2020.07.006\">https://doi.org/10.1016/j.neuron.2020.07.006</a>"},"publisher":"Elsevier","date_created":"2020-08-14T09:36:05Z","department":[{"_id":"PeJo"},{"_id":"ScienComp"}],"page":"1212-1225","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","image":"/images/cc_by_nc_nd.png","short":"CC BY-NC-ND (4.0)"},"status":"public","month":"09","volume":107,"title":"Selective routing of spatial information flow from input to output in hippocampal granule cells","year":"2020","day":"23","oa":1,"acknowledged_ssus":[{"_id":"M-Shop"},{"_id":"ScienComp"},{"_id":"PreCl"}],"abstract":[{"text":"Dentate gyrus granule cells (GCs) connect the entorhinal cortex to the hippocampal CA3 region, but how they process spatial information remains enigmatic. To examine the role of GCs in spatial coding, we measured excitatory postsynaptic potentials (EPSPs) and action potentials (APs) in head-fixed mice running on a linear belt. Intracellular recording from morphologically identified GCs revealed that most cells were active, but activity level varied over a wide range. Whereas only ∼5% of GCs showed spatially tuned spiking, ∼50% received spatially tuned input. Thus, the GC population broadly encodes spatial information, but only a subset relays this information to the CA3 network. Fourier analysis indicated that GCs received conjunctive place-grid-like synaptic input, suggesting code conversion in single neurons. GC firing was correlated with dendritic complexity and intrinsic excitability, but not extrinsic excitatory input or dendritic cable properties. Thus, functional maturation may control input-output transformation and spatial code conversion.","lang":"eng"}],"corr_author":"1","language":[{"iso":"eng"}],"ec_funded":1,"file_date_updated":"2020-12-04T09:29:21Z","publication_status":"published","doi":"10.1016/j.neuron.2020.07.006","date_updated":"2025-04-15T08:29:03Z","type":"journal_article","publication":"Neuron","ddc":["570"],"scopus_import":"1","article_type":"original","article_processing_charge":"No"},{"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1802.04907"}],"doi":"10.1109/TSP.2020.3010355","publication_status":"published","day":"20","oa":1,"volume":68,"title":"Compressive sensing using iterative hard thresholding with low precision data representation: Theory and applications","year":"2020","language":[{"iso":"eng"}],"abstract":[{"lang":"eng","text":"Modern scientific instruments produce vast amounts of data, which can overwhelm the processing ability of computer systems. Lossy compression of data is an intriguing solution, but comes with its own drawbacks, such as potential signal loss, and the need for careful optimization of the compression ratio. In this work, we focus on a setting where this problem is especially acute: compressive sensing frameworks for interferometry and medical imaging. We ask the following question: can the precision of the data representation be lowered for all inputs, with recovery guarantees and practical performance Our first contribution is a theoretical analysis of the normalized Iterative Hard Thresholding (IHT) algorithm when all input data, meaning both the measurement matrix and the observation vector are quantized aggressively. We present a variant of low precision normalized IHT that, under mild conditions, can still provide recovery guarantees. The second contribution is the application of our quantization framework to radio astronomy and magnetic resonance imaging. We show that lowering the precision of the data can significantly accelerate image recovery. We evaluate our approach on telescope data and samples of brain images using CPU and FPGA implementations achieving up to a 9x speedup with negligible loss of recovery quality."}],"article_processing_charge":"No","article_type":"original","date_updated":"2025-07-10T11:55:10Z","type":"journal_article","publication":"IEEE Transactions on Signal Processing","scopus_import":"1","isi":1,"author":[{"full_name":"Gurel, Nezihe Merve","last_name":"Gurel","first_name":"Nezihe Merve"},{"first_name":"Kaan","last_name":"Kara","full_name":"Kara, Kaan"},{"full_name":"Stojanov, Alen","last_name":"Stojanov","first_name":"Alen"},{"last_name":"Smith","first_name":"Tyler","full_name":"Smith, Tyler"},{"first_name":"Thomas","last_name":"Lemmin","full_name":"Lemmin, Thomas"},{"first_name":"Dan-Adrian","last_name":"Alistarh","id":"4A899BFC-F248-11E8-B48F-1D18A9856A87","full_name":"Alistarh, Dan-Adrian","orcid":"0000-0003-3650-940X"},{"full_name":"Puschel, Markus","last_name":"Puschel","first_name":"Markus"},{"full_name":"Zhang, Ce","last_name":"Zhang","first_name":"Ce"}],"external_id":{"isi":["000562044500001"],"arxiv":["1802.04907"]},"arxiv":1,"oa_version":"Preprint","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","acknowledgement":"The authors would like to thank Dr. Michiel Brentjens at the Netherlands Institute for Radio Astronomy (ASTRON) for providing radio interferometer data and Dr. Josip Marjanovic and Dr. Franciszek Hennel at the Magnetic Resonance Technology of ETH Zurich for providing their insights on the experiments. CZ and the DS3Lab gratefully acknowledge the support from the Swiss Data Science Center, Alibaba, Google Focused Research Awards, Huawei, MeteoSwiss, Oracle Labs, Swisscom, Zurich Insurance, Chinese Scholarship Council, and the Department of Computer Science at ETH Zurich.","department":[{"_id":"DaAl"}],"date_created":"2020-08-16T22:00:56Z","publisher":"IEEE","citation":{"chicago":"Gurel, Nezihe Merve, Kaan Kara, Alen Stojanov, Tyler Smith, Thomas Lemmin, Dan-Adrian Alistarh, Markus Puschel, and Ce Zhang. “Compressive Sensing Using Iterative Hard Thresholding with Low Precision Data Representation: Theory and Applications.” <i>IEEE Transactions on Signal Processing</i>. IEEE, 2020. <a href=\"https://doi.org/10.1109/TSP.2020.3010355\">https://doi.org/10.1109/TSP.2020.3010355</a>.","mla":"Gurel, Nezihe Merve, et al. “Compressive Sensing Using Iterative Hard Thresholding with Low Precision Data Representation: Theory and Applications.” <i>IEEE Transactions on Signal Processing</i>, vol. 68, IEEE, 2020, pp. 4268–82, doi:<a href=\"https://doi.org/10.1109/TSP.2020.3010355\">10.1109/TSP.2020.3010355</a>.","short":"N.M. Gurel, K. Kara, A. Stojanov, T. Smith, T. Lemmin, D.-A. Alistarh, M. Puschel, C. Zhang, IEEE Transactions on Signal Processing 68 (2020) 4268–4282.","ista":"Gurel NM, Kara K, Stojanov A, Smith T, Lemmin T, Alistarh D-A, Puschel M, Zhang C. 2020. Compressive sensing using iterative hard thresholding with low precision data representation: Theory and applications. IEEE Transactions on Signal Processing. 68, 4268–4282.","ama":"Gurel NM, Kara K, Stojanov A, et al. Compressive sensing using iterative hard thresholding with low precision data representation: Theory and applications. <i>IEEE Transactions on Signal Processing</i>. 2020;68:4268-4282. doi:<a href=\"https://doi.org/10.1109/TSP.2020.3010355\">10.1109/TSP.2020.3010355</a>","ieee":"N. M. Gurel <i>et al.</i>, “Compressive sensing using iterative hard thresholding with low precision data representation: Theory and applications,” <i>IEEE Transactions on Signal Processing</i>, vol. 68. IEEE, pp. 4268–4282, 2020.","apa":"Gurel, N. M., Kara, K., Stojanov, A., Smith, T., Lemmin, T., Alistarh, D.-A., … Zhang, C. (2020). Compressive sensing using iterative hard thresholding with low precision data representation: Theory and applications. <i>IEEE Transactions on Signal Processing</i>. IEEE. <a href=\"https://doi.org/10.1109/TSP.2020.3010355\">https://doi.org/10.1109/TSP.2020.3010355</a>"},"status":"public","month":"07","page":"4268-4282","quality_controlled":"1","date_published":"2020-07-20T00:00:00Z","intvolume":"        68","publication_identifier":{"issn":["1053-587X"],"eissn":["1941-0476"]},"_id":"8268"}]