[{"article_processing_charge":"No","tmp":{"name":"Creative Commons Public Domain Dedication (CC0 1.0)","short":"CC0 (1.0)","image":"/images/cc_0.png","legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode"},"ddc":["570"],"date_published":"2020-12-19T00:00:00Z","date_created":"2023-05-23T16:11:22Z","abstract":[{"lang":"eng","text":"Coinfections with multiple pathogens can result in complex within-host dynamics affecting virulence and transmission. Whilst multiple infections are intensively studied in solitary hosts, it is so far unresolved how social host interactions interfere with pathogen competition, and if this depends on coinfection diversity. We studied how the collective disease defenses of ants – their social immunity – influence pathogen competition in coinfections of same or different fungal pathogen species. Social immunity reduced virulence for all pathogen combinations, but interfered with spore production only in different-species coinfections. Here, it decreased overall pathogen sporulation success, whilst simultaneously increasing co-sporulation on individual cadavers and maintaining a higher pathogen diversity at the community-level. Mathematical modeling revealed that host sanitary care alone can modulate competitive outcomes between pathogens, giving advantage to fast-germinating, thus less grooming-sensitive ones. Host social interactions can hence modulate infection dynamics in coinfected group members, thereby altering pathogen communities at the host- and population-level."}],"related_material":{"record":[{"id":"7343","relation":"used_in_publication","status":"public"}]},"type":"research_data_reference","oa_version":"Published Version","license":"https://creativecommons.org/publicdomain/zero/1.0/","author":[{"orcid":"0000-0002-8214-4758","last_name":"Milutinovic","id":"2CDC32B8-F248-11E8-B48F-1D18A9856A87","first_name":"Barbara","full_name":"Milutinovic, Barbara"},{"full_name":"Stock, Miriam","first_name":"Miriam","id":"42462816-F248-11E8-B48F-1D18A9856A87","last_name":"Stock"},{"full_name":"Grasse, Anna V","last_name":"Grasse","first_name":"Anna V","id":"406F989C-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Naderlinger, Elisabeth","last_name":"Naderlinger","id":"31757262-F248-11E8-B48F-1D18A9856A87","first_name":"Elisabeth"},{"last_name":"Hilbe","id":"2FDF8F3C-F248-11E8-B48F-1D18A9856A87","first_name":"Christian","full_name":"Hilbe, Christian","orcid":"0000-0001-5116-955X"},{"full_name":"Cremer, Sylvia","id":"2F64EC8C-F248-11E8-B48F-1D18A9856A87","first_name":"Sylvia","last_name":"Cremer","orcid":"0000-0002-2193-3868"}],"title":"Social immunity modulates competition between coinfecting pathogens","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","department":[{"_id":"SyCr"},{"_id":"KrCh"}],"doi":"10.5061/DRYAD.CRJDFN318","day":"19","publisher":"Dryad","corr_author":"1","status":"public","_id":"13060","date_updated":"2025-06-12T07:32:35Z","citation":{"chicago":"Milutinovic, Barbara, Miriam Stock, Anna V Grasse, Elisabeth Naderlinger, Christian Hilbe, and Sylvia Cremer. “Social Immunity Modulates Competition between Coinfecting Pathogens.” Dryad, 2020. https://doi.org/10.5061/DRYAD.CRJDFN318.","mla":"Milutinovic, Barbara, et al. Social Immunity Modulates Competition between Coinfecting Pathogens. Dryad, 2020, doi:10.5061/DRYAD.CRJDFN318.","ama":"Milutinovic B, Stock M, Grasse AV, Naderlinger E, Hilbe C, Cremer S. Social immunity modulates competition between coinfecting pathogens. 2020. doi:10.5061/DRYAD.CRJDFN318","ieee":"B. Milutinovic, M. Stock, A. V. Grasse, E. Naderlinger, C. Hilbe, and S. Cremer, “Social immunity modulates competition between coinfecting pathogens.” Dryad, 2020.","short":"B. Milutinovic, M. Stock, A.V. Grasse, E. Naderlinger, C. Hilbe, S. Cremer, (2020).","apa":"Milutinovic, B., Stock, M., Grasse, A. V., Naderlinger, E., Hilbe, C., & Cremer, S. (2020). Social immunity modulates competition between coinfecting pathogens. Dryad. https://doi.org/10.5061/DRYAD.CRJDFN318","ista":"Milutinovic B, Stock M, Grasse AV, Naderlinger E, Hilbe C, Cremer S. 2020. Social immunity modulates competition between coinfecting pathogens, Dryad, 10.5061/DRYAD.CRJDFN318."},"month":"12","year":"2020","main_file_link":[{"open_access":"1","url":"https://doi.org/10.5061/dryad.crjdfn318"}],"oa":1},{"date_created":"2023-05-23T16:48:27Z","date_published":"2020-09-22T00:00:00Z","abstract":[{"lang":"eng","text":"The Mytilus complex of marine mussel species forms a mosaic of hybrid zones, found across temperate regions of the globe. This allows us to study \"replicated\" instances of secondary contact between closely-related species. Previous work on this complex has shown that local introgression is both widespread and highly heterogeneous, and has identified SNPs that are outliers of differentiation between lineages. Here, we developed an ancestry-informative panel of such SNPs. We then compared their frequencies in newly-sampled populations, including samples from within the hybrid zones, and parental populations at different distances from the contact. Results show that close to the hybrid zones, some outlier loci are near to fixation for the heterospecific allele, suggesting enhanced local introgression, or the local sweep of a shared ancestral allele. Conversely, genomic cline analyses, treating local parental populations as the reference, reveal a globally high concordance among loci, albeit with a few signals of asymmetric introgression. Enhanced local introgression at specific loci is consistent with the early transfer of adaptive variants after contact, possibly including asymmetric bi-stable variants (Dobzhansky-Muller incompatibilities), or haplotypes loaded with fewer deleterious mutations. Having escaped one barrier, however, these variants can be trapped or delayed at the next barrier, confining the introgression locally. These results shed light on the decay of species barriers during phases of contact."}],"related_material":{"record":[{"id":"8708","relation":"used_in_publication","status":"public"}]},"type":"research_data_reference","author":[{"full_name":"Simon, Alexis","last_name":"Simon","first_name":"Alexis"},{"first_name":"Christelle","id":"32DF5794-F248-11E8-B48F-1D18A9856A87","last_name":"Fraisse","full_name":"Fraisse, Christelle","orcid":"0000-0001-8441-5075"},{"first_name":"Tahani","last_name":"El Ayari","full_name":"El Ayari, Tahani"},{"first_name":"Cathy","last_name":"Liautard-Haag","full_name":"Liautard-Haag, Cathy"},{"first_name":"Petr","last_name":"Strelkov","full_name":"Strelkov, Petr"},{"full_name":"Welch, John","first_name":"John","last_name":"Welch"},{"first_name":"Nicolas","last_name":"Bierne","full_name":"Bierne, Nicolas"}],"oa_version":"Published Version","title":"How do species barriers decay? concordance and local introgression in mosaic hybrid zones of mussels","article_processing_charge":"No","tmp":{"name":"Creative Commons Public Domain Dedication (CC0 1.0)","short":"CC0 (1.0)","image":"/images/cc_0.png","legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode"},"ddc":["570"],"year":"2020","main_file_link":[{"open_access":"1","url":"https://doi.org/10.5061/dryad.r4xgxd29n"}],"oa":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","department":[{"_id":"NiBa"}],"doi":"10.5061/DRYAD.R4XGXD29N","day":"22","publisher":"Dryad","_id":"13073","citation":{"chicago":"Simon, Alexis, Christelle Fraisse, Tahani El Ayari, Cathy Liautard-Haag, Petr Strelkov, John Welch, and Nicolas Bierne. “How Do Species Barriers Decay? Concordance and Local Introgression in Mosaic Hybrid Zones of Mussels.” Dryad, 2020. https://doi.org/10.5061/DRYAD.R4XGXD29N.","ista":"Simon A, Fraisse C, El Ayari T, Liautard-Haag C, Strelkov P, Welch J, Bierne N. 2020. How do species barriers decay? concordance and local introgression in mosaic hybrid zones of mussels, Dryad, 10.5061/DRYAD.R4XGXD29N.","apa":"Simon, A., Fraisse, C., El Ayari, T., Liautard-Haag, C., Strelkov, P., Welch, J., & Bierne, N. (2020). How do species barriers decay? concordance and local introgression in mosaic hybrid zones of mussels. Dryad. https://doi.org/10.5061/DRYAD.R4XGXD29N","short":"A. Simon, C. Fraisse, T. El Ayari, C. Liautard-Haag, P. Strelkov, J. Welch, N. Bierne, (2020).","ieee":"A. Simon et al., “How do species barriers decay? concordance and local introgression in mosaic hybrid zones of mussels.” Dryad, 2020.","ama":"Simon A, Fraisse C, El Ayari T, et al. How do species barriers decay? concordance and local introgression in mosaic hybrid zones of mussels. 2020. doi:10.5061/DRYAD.R4XGXD29N","mla":"Simon, Alexis, et al. How Do Species Barriers Decay? Concordance and Local Introgression in Mosaic Hybrid Zones of Mussels. Dryad, 2020, doi:10.5061/DRYAD.R4XGXD29N."},"status":"public","date_updated":"2025-07-10T12:01:22Z","month":"09"},{"oa_version":"Preprint","abstract":[{"text":"Scanning nanoscale superconducting quantum interference devices (nanoSQUIDs)\r\nare of growing interest for highly sensitive quantitative imaging of magnetic,\r\nspintronic, and transport properties of low-dimensional systems. Utilizing\r\nspecifically designed grooved quartz capillaries pulled into a sharp pipette,\r\nwe have fabricated the smallest SQUID-on-tip (SOT) devices with effective\r\ndiameters down to 39 nm. Integration of a resistive shunt in close proximity to\r\nthe pipette apex combined with self-aligned deposition of In and Sn, have\r\nresulted in SOT with a flux noise of 42 n$\\Phi_0$Hz$^{-1/2}$, yielding a record\r\nlow spin noise of 0.29 $\\mu_B$Hz$^{-1/2}$. In addition, the new SOTs function\r\nat sub-Kelvin temperatures and in high magnetic fields of over 2.5 T.\r\nIntegrating the SOTs into a scanning probe microscope allowed us to image the\r\nstray field of a single Fe$_3$O$_4$ nanocube at 300 mK. Our results show that\r\nthe easy magnetization axis direction undergoes a transition from the (111)\r\ndirection at room temperature to an in-plane orientation, which could be\r\nattributed to the Verwey phase transition in Fe$_3$O$_4$.","lang":"eng"}],"date_created":"2023-08-01T08:27:12Z","volume":12,"article_type":"original","external_id":{"arxiv":["2001.03342"]},"scopus_import":"1","intvolume":" 12","issue":"5","extern":"1","oa":1,"main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2001.03342","open_access":"1"}],"status":"public","publication_status":"published","day":"10","doi":"10.1039/C9NR08578E","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"SQUID-on-tip with single-electron spin sensitivity for high-field and ultra-low temperature nanomagnetic imaging","author":[{"full_name":"Anahory, Y.","last_name":"Anahory","first_name":"Y."},{"first_name":"H. R.","last_name":"Naren","full_name":"Naren, H. R."},{"full_name":"Lachman, E. O.","last_name":"Lachman","first_name":"E. O."},{"last_name":"Sinai","first_name":"S. Buhbut","full_name":"Sinai, S. Buhbut"},{"first_name":"A.","last_name":"Uri","full_name":"Uri, A."},{"first_name":"L.","last_name":"Embon","full_name":"Embon, L."},{"last_name":"Yaakobi","first_name":"E.","full_name":"Yaakobi, E."},{"full_name":"Myasoedov, Y.","first_name":"Y.","last_name":"Myasoedov"},{"full_name":"Huber, M. E.","first_name":"M. E.","last_name":"Huber"},{"last_name":"Klajn","id":"8e84690e-1e48-11ed-a02b-a1e6fb8bb53b","first_name":"Rafal","full_name":"Klajn, Rafal"},{"full_name":"Zeldov, E.","last_name":"Zeldov","first_name":"E."}],"arxiv":1,"type":"journal_article","date_published":"2020-01-10T00:00:00Z","publication":"Nanoscale","publication_identifier":{"eissn":["2040-3372"]},"quality_controlled":"1","article_processing_charge":"No","year":"2020","month":"01","citation":{"chicago":"Anahory, Y., H. R. Naren, E. O. Lachman, S. Buhbut Sinai, A. Uri, L. Embon, E. Yaakobi, et al. “SQUID-on-Tip with Single-Electron Spin Sensitivity for High-Field and Ultra-Low Temperature Nanomagnetic Imaging.” Nanoscale. Royal Society of Chemistry, 2020. https://doi.org/10.1039/C9NR08578E.","ieee":"Y. Anahory et al., “SQUID-on-tip with single-electron spin sensitivity for high-field and ultra-low temperature nanomagnetic imaging,” Nanoscale, vol. 12, no. 5. Royal Society of Chemistry, pp. 3174–3182, 2020.","ama":"Anahory Y, Naren HR, Lachman EO, et al. SQUID-on-tip with single-electron spin sensitivity for high-field and ultra-low temperature nanomagnetic imaging. Nanoscale. 2020;12(5):3174-3182. doi:10.1039/C9NR08578E","mla":"Anahory, Y., et al. “SQUID-on-Tip with Single-Electron Spin Sensitivity for High-Field and Ultra-Low Temperature Nanomagnetic Imaging.” Nanoscale, vol. 12, no. 5, Royal Society of Chemistry, 2020, pp. 3174–82, doi:10.1039/C9NR08578E.","ista":"Anahory Y, Naren HR, Lachman EO, Sinai SB, Uri A, Embon L, Yaakobi E, Myasoedov Y, Huber ME, Klajn R, Zeldov E. 2020. SQUID-on-tip with single-electron spin sensitivity for high-field and ultra-low temperature nanomagnetic imaging. Nanoscale. 12(5), 3174–3182.","apa":"Anahory, Y., Naren, H. R., Lachman, E. O., Sinai, S. B., Uri, A., Embon, L., … Zeldov, E. (2020). SQUID-on-tip with single-electron spin sensitivity for high-field and ultra-low temperature nanomagnetic imaging. Nanoscale. Royal Society of Chemistry. https://doi.org/10.1039/C9NR08578E","short":"Y. Anahory, H.R. Naren, E.O. Lachman, S.B. Sinai, A. Uri, L. Embon, E. Yaakobi, Y. Myasoedov, M.E. Huber, R. Klajn, E. Zeldov, Nanoscale 12 (2020) 3174–3182."},"_id":"13341","date_updated":"2023-08-02T09:35:52Z","page":"3174-3182","publisher":"Royal Society of Chemistry","language":[{"iso":"eng"}]},{"status":"public","publication_status":"published","day":"12","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.1126/science.aay8413","issue":"6496","main_file_link":[{"url":"https://doi.org/10.48550/arXiv.1902.07331","open_access":"1"}],"extern":"1","oa":1,"external_id":{"pmid":["32527829"],"arxiv":["1902.07331"]},"scopus_import":"1","intvolume":" 368","oa_version":"Preprint","pmid":1,"OA_type":"green","abstract":[{"lang":"eng","text":"Microstructures can be carefully designed to reveal the quantum phase of the wave-like nature of electrons in a metal. Here, we report phase-coherent oscillations of out-of-plane magnetoresistance in the layered delafossites PdCoO2 and PtCoO2. The oscillation period is equivalent to that determined by the magnetic flux quantum, h/e, threading an area defined by the atomic interlayer separation and the sample width, where h is Planck’s constant and e is the charge of an electron. The phase of the electron wave function appears robust over length scales exceeding 10 micrometers and persisting up to temperatures of T > 50 kelvin. We show that the experimental signal stems from a periodic field modulation of the out-of-plane hopping. These results demonstrate extraordinary single-particle quantum coherence lengths in delafossites."}],"article_type":"original","date_created":"2025-06-10T09:11:34Z","volume":368,"citation":{"chicago":"Putzke, Carsten, Maja D. Bachmann, Philippa McGuinness, Elina Zhakina, Veronika Sunko, Marcin Konczykowski, Takashi Oka, et al. “H/e Oscillations in Interlayer Transport of Delafossites.” Science. American Association for the Advancement of Science, 2020. https://doi.org/10.1126/science.aay8413.","apa":"Putzke, C., Bachmann, M. D., McGuinness, P., Zhakina, E., Sunko, V., Konczykowski, M., … Moll, P. J. W. (2020). h/e oscillations in interlayer transport of delafossites. Science. American Association for the Advancement of Science. https://doi.org/10.1126/science.aay8413","short":"C. Putzke, M.D. Bachmann, P. McGuinness, E. Zhakina, V. Sunko, M. Konczykowski, T. Oka, R. Moessner, A. Stern, M. König, S. Khim, A.P. Mackenzie, P.J.W. Moll, Science 368 (2020) 1234–1238.","ista":"Putzke C, Bachmann MD, McGuinness P, Zhakina E, Sunko V, Konczykowski M, Oka T, Moessner R, Stern A, König M, Khim S, Mackenzie AP, Moll PJW. 2020. h/e oscillations in interlayer transport of delafossites. Science. 368(6496), 1234–1238.","mla":"Putzke, Carsten, et al. “H/e Oscillations in Interlayer Transport of Delafossites.” Science, vol. 368, no. 6496, American Association for the Advancement of Science, 2020, pp. 1234–38, doi:10.1126/science.aay8413.","ama":"Putzke C, Bachmann MD, McGuinness P, et al. h/e oscillations in interlayer transport of delafossites. Science. 2020;368(6496):1234-1238. doi:10.1126/science.aay8413","ieee":"C. Putzke et al., “h/e oscillations in interlayer transport of delafossites,” Science, vol. 368, no. 6496. American Association for the Advancement of Science, pp. 1234–1238, 2020."},"_id":"19807","date_updated":"2025-06-10T11:27:54Z","page":"1234-1238","month":"06","language":[{"iso":"eng"}],"publisher":"American Association for the Advancement of Science","OA_place":"repository","year":"2020","publication":"Science","quality_controlled":"1","publication_identifier":{"issn":["0036-8075"],"eissn":["1095-9203"]},"article_processing_charge":"No","author":[{"full_name":"Putzke, Carsten","first_name":"Carsten","last_name":"Putzke"},{"last_name":"Bachmann","first_name":"Maja D.","full_name":"Bachmann, Maja D."},{"full_name":"McGuinness, Philippa","first_name":"Philippa","last_name":"McGuinness"},{"full_name":"Zhakina, Elina","first_name":"Elina","last_name":"Zhakina"},{"orcid":"0000-0003-2724-3523","id":"23cb1cf6-2c7a-11ef-91a4-f72fc19f20b3","first_name":"Veronika","last_name":"Sunko","full_name":"Sunko, Veronika"},{"full_name":"Konczykowski, Marcin","first_name":"Marcin","last_name":"Konczykowski"},{"full_name":"Oka, Takashi","last_name":"Oka","first_name":"Takashi"},{"first_name":"Roderich","last_name":"Moessner","full_name":"Moessner, Roderich"},{"first_name":"Ady","last_name":"Stern","full_name":"Stern, Ady"},{"full_name":"König, Markus","first_name":"Markus","last_name":"König"},{"first_name":"Seunghyun","last_name":"Khim","full_name":"Khim, Seunghyun"},{"full_name":"Mackenzie, Andrew P.","first_name":"Andrew P.","last_name":"Mackenzie"},{"full_name":"Moll, Philip J.W.","last_name":"Moll","first_name":"Philip J.W."}],"title":"h/e oscillations in interlayer transport of delafossites","arxiv":1,"type":"journal_article","date_published":"2020-06-12T00:00:00Z"},{"external_id":{"arxiv":["1809.08972"],"pmid":["32128385"]},"tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"scopus_import":"1","intvolume":" 6","pmid":1,"oa_version":"Published Version","OA_type":"gold","article_number":"aaz0611","abstract":[{"text":"A nearly free electron metal and a Mott insulating state can be thought of as opposite ends of the spectrum of possibilities for the motion of electrons in a solid. Understanding their interaction lies at the heart of the correlated electron problem. In the magnetic oxide metal PdCrO2, nearly free and Mott-localized electrons exist in alternating layers, forming natural heterostructures. Using angle-resolved photoemission spectroscopy, quantitatively supported by a strong coupling analysis, we show that the coupling between these layers leads to an “intertwined” excitation that is a convolution of the charge spectrum of the metallic layer and the spin susceptibility of the Mott layer. Our findings establish PdCrO2 as a model system in which to probe Kondo lattice physics and also open new routes to use the a priori nonmagnetic probe of photoemission to gain insights into the spin susceptibility of correlated electron materials.","lang":"eng"}],"date_created":"2025-06-10T09:14:20Z","volume":6,"article_type":"original","status":"public","publication_status":"published","day":"07","doi":"10.1126/sciadv.aaz0611","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","issue":"6","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1126/sciadv.aaz0611"}],"oa":1,"extern":"1","publication":"Science Advances","publication_identifier":{"eissn":["2375-2548"]},"quality_controlled":"1","article_processing_charge":"Yes","title":"Probing spin correlations using angle-resolved photoemission in a coupled metallic/Mott insulator system","author":[{"id":"23cb1cf6-2c7a-11ef-91a4-f72fc19f20b3","first_name":"Veronika","last_name":"Sunko","full_name":"Sunko, Veronika","orcid":"0000-0003-2724-3523"},{"full_name":"Mazzola, F.","first_name":"F.","last_name":"Mazzola"},{"last_name":"Kitamura","first_name":"S.","full_name":"Kitamura, S."},{"last_name":"Khim","first_name":"S.","full_name":"Khim, S."},{"full_name":"Kushwaha, P.","last_name":"Kushwaha","first_name":"P."},{"full_name":"Clark, O. J.","first_name":"O. J.","last_name":"Clark"},{"first_name":"M. D.","last_name":"Watson","full_name":"Watson, M. D."},{"full_name":"Marković, I.","first_name":"I.","last_name":"Marković"},{"last_name":"Biswas","first_name":"D.","full_name":"Biswas, D."},{"last_name":"Pourovskii","first_name":"L.","full_name":"Pourovskii, L."},{"full_name":"Kim, T. K.","last_name":"Kim","first_name":"T. K."},{"full_name":"Lee, T.-L.","first_name":"T.-L.","last_name":"Lee"},{"full_name":"Thakur, P. K.","last_name":"Thakur","first_name":"P. K."},{"full_name":"Rosner, H.","first_name":"H.","last_name":"Rosner"},{"full_name":"Georges, A.","last_name":"Georges","first_name":"A."},{"first_name":"R.","last_name":"Moessner","full_name":"Moessner, R."},{"full_name":"Oka, T.","first_name":"T.","last_name":"Oka"},{"last_name":"Mackenzie","first_name":"A. P.","full_name":"Mackenzie, A. P."},{"full_name":"King, P. D. C.","first_name":"P. D. C.","last_name":"King"}],"arxiv":1,"has_accepted_license":"1","type":"journal_article","date_published":"2020-02-07T00:00:00Z","month":"02","_id":"19812","citation":{"short":"V. Sunko, F. Mazzola, S. Kitamura, S. Khim, P. Kushwaha, O.J. Clark, M.D. Watson, I. Marković, D. Biswas, L. Pourovskii, T.K. Kim, T.-L. Lee, P.K. Thakur, H. Rosner, A. Georges, R. Moessner, T. Oka, A.P. Mackenzie, P.D.C. King, Science Advances 6 (2020).","apa":"Sunko, V., Mazzola, F., Kitamura, S., Khim, S., Kushwaha, P., Clark, O. J., … King, P. D. C. (2020). Probing spin correlations using angle-resolved photoemission in a coupled metallic/Mott insulator system. Science Advances. American Association for the Advancement of Science. https://doi.org/10.1126/sciadv.aaz0611","ista":"Sunko V, Mazzola F, Kitamura S, Khim S, Kushwaha P, Clark OJ, Watson MD, Marković I, Biswas D, Pourovskii L, Kim TK, Lee T-L, Thakur PK, Rosner H, Georges A, Moessner R, Oka T, Mackenzie AP, King PDC. 2020. Probing spin correlations using angle-resolved photoemission in a coupled metallic/Mott insulator system. Science Advances. 6(6), aaz0611.","mla":"Sunko, Veronika, et al. “Probing Spin Correlations Using Angle-Resolved Photoemission in a Coupled Metallic/Mott Insulator System.” Science Advances, vol. 6, no. 6, aaz0611, American Association for the Advancement of Science, 2020, doi:10.1126/sciadv.aaz0611.","ama":"Sunko V, Mazzola F, Kitamura S, et al. Probing spin correlations using angle-resolved photoemission in a coupled metallic/Mott insulator system. Science Advances. 2020;6(6). doi:10.1126/sciadv.aaz0611","ieee":"V. Sunko et al., “Probing spin correlations using angle-resolved photoemission in a coupled metallic/Mott insulator system,” Science Advances, vol. 6, no. 6. American Association for the Advancement of Science, 2020.","chicago":"Sunko, Veronika, F. Mazzola, S. Kitamura, S. Khim, P. Kushwaha, O. J. Clark, M. D. Watson, et al. “Probing Spin Correlations Using Angle-Resolved Photoemission in a Coupled Metallic/Mott Insulator System.” Science Advances. American Association for the Advancement of Science, 2020. https://doi.org/10.1126/sciadv.aaz0611."},"date_updated":"2025-06-10T13:12:09Z","publisher":"American Association for the Advancement of Science","language":[{"iso":"eng"}],"OA_place":"publisher","year":"2020"},{"year":"2020","date_updated":"2025-06-10T12:30:48Z","_id":"19817","citation":{"ista":"Sunko V, Milosavljević D, Mazzola F, Clark OJ, Burkhardt U, Kim TK, Rosner H, Grin Y, Mackenzie AP, King PDC. 2020. Surface and bulk electronic structure of aluminium diboride. Physical Review B. 102(3), 035143.","short":"V. Sunko, D. Milosavljević, F. Mazzola, O.J. Clark, U. Burkhardt, T.K. Kim, H. Rosner, Y. Grin, A.P. Mackenzie, P.D.C. King, Physical Review B 102 (2020).","apa":"Sunko, V., Milosavljević, D., Mazzola, F., Clark, O. J., Burkhardt, U., Kim, T. K., … King, P. D. C. (2020). Surface and bulk electronic structure of aluminium diboride. Physical Review B. American Physical Society. https://doi.org/10.1103/physrevb.102.035143","ieee":"V. Sunko et al., “Surface and bulk electronic structure of aluminium diboride,” Physical Review B, vol. 102, no. 3. American Physical Society, 2020.","mla":"Sunko, Veronika, et al. “Surface and Bulk Electronic Structure of Aluminium Diboride.” Physical Review B, vol. 102, no. 3, 035143, American Physical Society, 2020, doi:10.1103/physrevb.102.035143.","ama":"Sunko V, Milosavljević D, Mazzola F, et al. Surface and bulk electronic structure of aluminium diboride. Physical Review B. 2020;102(3). doi:10.1103/physrevb.102.035143","chicago":"Sunko, Veronika, D. Milosavljević, F. Mazzola, O. J. Clark, U. Burkhardt, T. K. Kim, H. Rosner, Yu. Grin, A. P. Mackenzie, and P. D. C. King. “Surface and Bulk Electronic Structure of Aluminium Diboride.” Physical Review B. American Physical Society, 2020. https://doi.org/10.1103/physrevb.102.035143."},"month":"07","language":[{"iso":"eng"}],"publisher":"American Physical Society","author":[{"orcid":"0000-0003-2724-3523","full_name":"Sunko, Veronika","last_name":"Sunko","id":"23cb1cf6-2c7a-11ef-91a4-f72fc19f20b3","first_name":"Veronika"},{"first_name":"D.","last_name":"Milosavljević","full_name":"Milosavljević, D."},{"first_name":"F.","last_name":"Mazzola","full_name":"Mazzola, F."},{"first_name":"O. J.","last_name":"Clark","full_name":"Clark, O. J."},{"full_name":"Burkhardt, U.","first_name":"U.","last_name":"Burkhardt"},{"full_name":"Kim, T. K.","first_name":"T. K.","last_name":"Kim"},{"full_name":"Rosner, H.","first_name":"H.","last_name":"Rosner"},{"last_name":"Grin","first_name":"Yu.","full_name":"Grin, Yu."},{"last_name":"Mackenzie","first_name":"A. P.","full_name":"Mackenzie, A. P."},{"last_name":"King","first_name":"P. D. C.","full_name":"King, P. D. C."}],"title":"Surface and bulk electronic structure of aluminium diboride","type":"journal_article","date_published":"2020-07-22T00:00:00Z","publication":"Physical Review B","quality_controlled":"1","publication_identifier":{"eissn":["2469-9969"],"issn":["2469-9950"]},"article_processing_charge":"No","issue":"3","extern":"1","status":"public","publication_status":"published","day":"22","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.1103/physrevb.102.035143","oa_version":"None","OA_type":"closed access","abstract":[{"lang":"eng","text":"We report a combined experimental and theoretical study of the surface and bulk electronic structure of aluminium diboride, a nonsuperconducting sister compound of the superconductor MgB2. We perform angle-resolved photoemission measurements with variable photon energy, and compare them to density functional theory calculations to disentangle the surface and bulk contributions to the measured spectra. Aluminium diboride is known to be aluminium deficient, Al1−𝛿B2, which would be expected to lead to a hole doping as compared to the nominally stoichimoetric compound. Nonetheless, we find that the bulk 𝜎 states, which mediate superconductivity in MgB2, remain more than 600meV below the Fermi level. However, we also observe 𝜎 states originating from the boron terminated surface, with an order of magnitude smaller binding energy of 70meV, and demonstrate how surface hole-doping can bring these across the Fermi level."}],"article_number":"035143","article_type":"original","date_created":"2025-06-10T09:17:59Z","volume":102,"scopus_import":"1","intvolume":" 102"},{"article_processing_charge":"Yes","publication_identifier":{"eissn":["2160-3308"]},"quality_controlled":"1","publication":"Physical Review X","date_published":"2020-04-24T00:00:00Z","DOAJ_listed":"1","type":"journal_article","arxiv":1,"title":"Controlled introduction of defects to delafossite metals by electron irradiation","author":[{"full_name":"Sunko, Veronika","last_name":"Sunko","id":"23cb1cf6-2c7a-11ef-91a4-f72fc19f20b3","first_name":"Veronika","orcid":"0000-0003-2724-3523"},{"first_name":"P. H.","last_name":"McGuinness","full_name":"McGuinness, P. H."},{"last_name":"Chang","first_name":"C. S.","full_name":"Chang, C. S."},{"last_name":"Zhakina","first_name":"E.","full_name":"Zhakina, E."},{"first_name":"S.","last_name":"Khim","full_name":"Khim, S."},{"full_name":"Dreyer, C. E.","last_name":"Dreyer","first_name":"C. E."},{"last_name":"Konczykowski","first_name":"M.","full_name":"Konczykowski, M."},{"first_name":"H.","last_name":"Borrmann","full_name":"Borrmann, H."},{"first_name":"P. J. W.","last_name":"Moll","full_name":"Moll, P. J. W."},{"last_name":"König","first_name":"M.","full_name":"König, M."},{"first_name":"D. A.","last_name":"Muller","full_name":"Muller, D. A."},{"first_name":"A. P.","last_name":"Mackenzie","full_name":"Mackenzie, A. P."}],"publisher":"American Physical Society","language":[{"iso":"eng"}],"month":"04","date_updated":"2025-06-10T13:08:51Z","_id":"19823","citation":{"chicago":"Sunko, Veronika, P. H. McGuinness, C. S. Chang, E. Zhakina, S. Khim, C. E. Dreyer, M. Konczykowski, et al. “Controlled Introduction of Defects to Delafossite Metals by Electron Irradiation.” Physical Review X. American Physical Society, 2020. https://doi.org/10.1103/physrevx.10.021018.","mla":"Sunko, Veronika, et al. “Controlled Introduction of Defects to Delafossite Metals by Electron Irradiation.” Physical Review X, vol. 10, no. 2, 021018, American Physical Society, 2020, doi:10.1103/physrevx.10.021018.","ama":"Sunko V, McGuinness PH, Chang CS, et al. Controlled introduction of defects to delafossite metals by electron irradiation. Physical Review X. 2020;10(2). doi:10.1103/physrevx.10.021018","ieee":"V. Sunko et al., “Controlled introduction of defects to delafossite metals by electron irradiation,” Physical Review X, vol. 10, no. 2. American Physical Society, 2020.","apa":"Sunko, V., McGuinness, P. H., Chang, C. S., Zhakina, E., Khim, S., Dreyer, C. E., … Mackenzie, A. P. (2020). Controlled introduction of defects to delafossite metals by electron irradiation. Physical Review X. American Physical Society. https://doi.org/10.1103/physrevx.10.021018","short":"V. Sunko, P.H. McGuinness, C.S. Chang, E. Zhakina, S. Khim, C.E. Dreyer, M. Konczykowski, H. Borrmann, P.J.W. Moll, M. König, D.A. Muller, A.P. Mackenzie, Physical Review X 10 (2020).","ista":"Sunko V, McGuinness PH, Chang CS, Zhakina E, Khim S, Dreyer CE, Konczykowski M, Borrmann H, Moll PJW, König M, Muller DA, Mackenzie AP. 2020. Controlled introduction of defects to delafossite metals by electron irradiation. Physical Review X. 10(2), 021018."},"year":"2020","OA_place":"publisher","intvolume":" 10","scopus_import":"1","external_id":{"arxiv":["2001.01471"]},"date_created":"2025-06-10T09:21:11Z","volume":10,"article_type":"original","article_number":"021018","abstract":[{"lang":"eng","text":"The delafossite metals PdCoO2, PtCoO2, and PdCrO2 are among the highest conductivity materials known, with low-temperature mean free paths of tens of microns in the best as-grown single crystals. A key question is whether these very low resistive scattering rates result from strongly suppressed backscattering due to special features of the electronic structure or are a consequence of highly unusual levels of crystalline perfection. We report the results of experiments in which high-energy electron irradiation was used to introduce point disorder to the Pd and Pt layers in which the conduction occurs. We obtain the cross section for formation of Frenkel pairs in absolute units, and cross-check our analysis with first-principles calculations of the relevant atomic displacement energies. We observe an increase of resistivity that is linear in defect density with a slope consistent with scattering in the unitary limit. Our results enable us to deduce that the as-grown crystals contain extremely low levels of in-plane defects of approximately 0.001%. This confirms that crystalline perfection is the most important factor in realizing the long mean free paths and highlights how unusual these delafossite metals are in comparison with the vast majority of other multicomponent oxides and alloys. We discuss the implications of our findings for future materials research."}],"OA_type":"gold","oa_version":"Published Version","doi":"10.1103/physrevx.10.021018","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","day":"24","publication_status":"published","status":"public","oa":1,"extern":"1","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1103/PhysRevX.10.021018"}],"issue":"2"},{"status":"public","publication_status":"published","project":[{"_id":"25863FF4-B435-11E9-9278-68D0E5697425","grant_number":"S11407","call_identifier":"FWF","name":"Game Theory"}],"day":"18","department":[{"_id":"KrCh"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.1017/9781108770750.008","file_date_updated":"2025-09-23T12:03:09Z","oa":1,"tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"oa_version":"Published Version","abstract":[{"lang":"eng","text":"For non-probabilistic programs, a key question in static analysis is termination, which asks whether a given program terminates under a given initial condition. In the presence of probabilistic behaviour, there are two fundamental extensions of the termination question: (a) the almost-sure termination question, which asks whether the termination probability is 1; and (b) the bounded-time termination question, which asks whether the expected termination time is bounded. There are many active research directions to address these two questions; one important such direction is the use of martingale theory for termination analysis. In this chapter, we survey the main techniques of the martingale-based approach to the termination analysis of probabilistic programs."}],"date_created":"2025-07-10T13:28:51Z","_id":"19986","date_updated":"2025-09-23T12:10:25Z","citation":{"mla":"Chatterjee, Krishnendu, et al. “Termination Analysis of Probabilistic Programs with Martingales.” Foundations of Probabilistic Programming, Cambridge University Press, 2020, pp. 221–58, doi:10.1017/9781108770750.008.","ama":"Chatterjee K, Fu H, Novotný P. Termination Analysis of Probabilistic Programs with Martingales. In: Foundations of Probabilistic Programming. Cambridge University Press; 2020:221-258. doi:10.1017/9781108770750.008","ieee":"K. Chatterjee, H. Fu, and P. Novotný, “Termination Analysis of Probabilistic Programs with Martingales,” in Foundations of Probabilistic Programming, Cambridge University Press, 2020, pp. 221–258.","short":"K. Chatterjee, H. Fu, P. Novotný, in:, Foundations of Probabilistic Programming, Cambridge University Press, 2020, pp. 221–258.","apa":"Chatterjee, K., Fu, H., & Novotný, P. (2020). Termination Analysis of Probabilistic Programs with Martingales. In Foundations of Probabilistic Programming (pp. 221–258). Cambridge University Press. https://doi.org/10.1017/9781108770750.008","ista":"Chatterjee K, Fu H, Novotný P. 2020.Termination Analysis of Probabilistic Programs with Martingales. In: Foundations of Probabilistic Programming. , 221–258.","chicago":"Chatterjee, Krishnendu, Hongfei Fu, and Petr Novotný. “Termination Analysis of Probabilistic Programs with Martingales.” In Foundations of Probabilistic Programming, 221–58. Cambridge University Press, 2020. https://doi.org/10.1017/9781108770750.008."},"page":"221-258","month":"11","language":[{"iso":"eng"}],"publisher":"Cambridge University Press","corr_author":"1","file":[{"content_type":"application/pdf","relation":"main_file","access_level":"open_access","date_updated":"2025-09-23T12:03:09Z","success":1,"file_name":"2020_ProbProgramming_Chatterjee.pdf","file_size":316681,"checksum":"28ece115e8d2d9263e253a598e7caef2","date_created":"2025-09-23T12:03:09Z","file_id":"20380","creator":"dernst"}],"OA_place":"publisher","acknowledgement":"Krishnendu Chatterjee is supported by the Austrian Science Fund (FWF) NFN\r\nGrant No. S11407-N23 (RiSE/SHiNE), and COST Action GAMENET. Hongfei Fu\r\nis supported by the National Natural Science Foundation of China (NSFC) Grant\r\nNo. 61802254. Petr Novotný is supported by the Czech Science Foundation grant\r\nNo. GJ19-15134Y.","year":"2020","ddc":["000"],"publication":"Foundations of Probabilistic Programming","quality_controlled":"1","publication_identifier":{"isbn":["9781108488518"],"eisbn":["9781108770750"]},"article_processing_charge":"No","author":[{"orcid":"0000-0002-4561-241X","full_name":"Chatterjee, Krishnendu","last_name":"Chatterjee","first_name":"Krishnendu","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Fu","id":"3AAD03D6-F248-11E8-B48F-1D18A9856A87","first_name":"Hongfei","full_name":"Fu, Hongfei"},{"id":"3CC3B868-F248-11E8-B48F-1D18A9856A87","first_name":"Petr","last_name":"Novotný","full_name":"Novotný, Petr"}],"title":"Termination Analysis of Probabilistic Programs with Martingales","has_accepted_license":"1","type":"book_chapter","date_published":"2020-11-18T00:00:00Z"},{"month":"06","_id":"20766","page":"10914-10920","citation":{"ista":"Bhawal BN, Reisenbauer J, Ehinger C, Morandi B. 2020. Overcoming selectivity issues in reversible catalysis: A transfer hydrocyanation exhibiting high kinetic control. Journal of the American Chemical Society. 142(25), 10914–10920.","apa":"Bhawal, B. N., Reisenbauer, J., Ehinger, C., & Morandi, B. (2020). Overcoming selectivity issues in reversible catalysis: A transfer hydrocyanation exhibiting high kinetic control. Journal of the American Chemical Society. American Chemical Society. https://doi.org/10.1021/jacs.0c03184","short":"B.N. Bhawal, J. Reisenbauer, C. Ehinger, B. Morandi, Journal of the American Chemical Society 142 (2020) 10914–10920.","ieee":"B. N. Bhawal, J. Reisenbauer, C. Ehinger, and B. Morandi, “Overcoming selectivity issues in reversible catalysis: A transfer hydrocyanation exhibiting high kinetic control,” Journal of the American Chemical Society, vol. 142, no. 25. American Chemical Society, pp. 10914–10920, 2020.","ama":"Bhawal BN, Reisenbauer J, Ehinger C, Morandi B. Overcoming selectivity issues in reversible catalysis: A transfer hydrocyanation exhibiting high kinetic control. Journal of the American Chemical Society. 2020;142(25):10914-10920. doi:10.1021/jacs.0c03184","mla":"Bhawal, Benjamin N., et al. “Overcoming Selectivity Issues in Reversible Catalysis: A Transfer Hydrocyanation Exhibiting High Kinetic Control.” Journal of the American Chemical Society, vol. 142, no. 25, American Chemical Society, 2020, pp. 10914–20, doi:10.1021/jacs.0c03184.","chicago":"Bhawal, Benjamin N., Julia Reisenbauer, Christian Ehinger, and Bill Morandi. “Overcoming Selectivity Issues in Reversible Catalysis: A Transfer Hydrocyanation Exhibiting High Kinetic Control.” Journal of the American Chemical Society. American Chemical Society, 2020. https://doi.org/10.1021/jacs.0c03184."},"date_updated":"2025-12-16T12:10:08Z","publisher":"American Chemical Society","language":[{"iso":"eng"}],"year":"2020","OA_place":"repository","publication_identifier":{"issn":["0002-7863"],"eissn":["1520-5126"]},"quality_controlled":"1","article_processing_charge":"No","publication":"Journal of the American Chemical Society","type":"journal_article","date_published":"2020-06-01T00:00:00Z","title":"Overcoming selectivity issues in reversible catalysis: A transfer hydrocyanation exhibiting high kinetic control","author":[{"full_name":"Bhawal, Benjamin N.","first_name":"Benjamin N.","last_name":"Bhawal"},{"id":"51d862e9-36ee-11f0-86d3-8534c85a5496","first_name":"Julia","last_name":"Reisenbauer","full_name":"Reisenbauer, Julia"},{"full_name":"Ehinger, Christian","first_name":"Christian","last_name":"Ehinger"},{"full_name":"Morandi, Bill","first_name":"Bill","last_name":"Morandi"}],"day":"01","doi":"10.1021/jacs.0c03184","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","publication_status":"published","extern":"1","oa":1,"main_file_link":[{"open_access":"1","url":"10.26434/chemrxiv.11931633.v1"}],"issue":"25","intvolume":" 142","external_id":{"pmid":["32478515"]},"scopus_import":"1","abstract":[{"text":"Reversible catalytic reactions operate under thermodynamic control, and thus, establishing a selective catalytic system poses a considerable challenge. Herein, we report a reversible transfer hydrocyanation protocol that exhibits high selectivity for the thermodynamically less favorable branched isomer. Selectivity is achieved by exploiting the lower barrier for C–CN oxidative addition and reductive elimination at benzylic positions in the absence of a cocatalytic Lewis acid. Through the design of a novel type of HCN donor, a practical, branched-selective, HCN-free transfer hydrocyanation was realized. The synthetically useful resolution of a mixture of branched and linear nitrile isomers was also demonstrated to underline the value of reversible and selective transfer reactions. In a broader context, this work demonstrates that high kinetic selectivity can be achieved in reversible transfer reactions, thus opening new horizons for their synthetic applications.","lang":"eng"}],"volume":142,"date_created":"2025-12-09T14:25:37Z","article_type":"original","pmid":1,"oa_version":"Preprint","OA_type":"green"},{"article_type":"original","volume":386,"date_created":"2025-12-12T09:03:03Z","abstract":[{"text":"Regulation of phosphatidylinositol phosphates plays a crucial role in signal transduction, membrane trafficking or autophagy. Members of the myotubularin family of lipid phosphatases contribute to phosphoinositide metabolism by counteracting the activity of phosphoinositide kinases. The mechanisms determining their subcellular localization and targeting to specific membrane compartments are still poorly understood.\r\nWe show here that the inactive phosphatase MTMR9 localizes to the intermediate compartment and to the Golgi apparatus and is able to recruit its active phosphatase partners MTMR6 and MTMR8 to these locations. Furthermore, MTMR8 and MTMR9 co-localize with the small GTPase RAB1A and regulate its localization. Loss of MTMR9 expression compromises the integrity of the Golgi apparatus and results in altered distribution of RAB1A and actin nucleation-promoting factor WHAMM. Loss or overexpression of MTMR9 leads to decreased rate of protein secretion. We demonstrate that secretion of physiologically relevant cargo exemplified by the WNT3A protein is affected after perturbation of MTMR9 levels.","lang":"eng"}],"article_number":"111709","OA_type":"closed access","oa_version":"None","pmid":1,"intvolume":" 386","scopus_import":"1","external_id":{"pmid":["31704058 "]},"extern":"1","issue":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.1016/j.yexcr.2019.111709","day":"01","publication_status":"published","status":"public","date_published":"2020-01-01T00:00:00Z","type":"journal_article","author":[{"full_name":"Doubravská, Lenka","first_name":"Lenka","last_name":"Doubravská"},{"full_name":"Dostál, Vojtěch","first_name":"Vojtěch","last_name":"Dostál"},{"full_name":"Knop, Filip","last_name":"Knop","first_name":"Filip","id":"25f3131f-6e7c-11ef-8296-b64ccd4a1b69","orcid":"0000-0002-3845-3465"},{"first_name":"Lenka","last_name":"Libusová","full_name":"Libusová, Lenka"},{"full_name":"Macůrková, Marie","last_name":"Macůrková","first_name":"Marie"}],"title":"Human myotubularin-related protein 9 regulates ER-to-Golgi trafficking and modulates WNT3A secretion","article_processing_charge":"No","quality_controlled":"1","publication_identifier":{"issn":["0014-4827"]},"publication":"Experimental Cell Research","year":"2020","language":[{"iso":"eng"}],"publisher":"Elsevier","citation":{"ieee":"L. Doubravská, V. Dostál, F. Knop, L. Libusová, and M. Macůrková, “Human myotubularin-related protein 9 regulates ER-to-Golgi trafficking and modulates WNT3A secretion,” Experimental Cell Research, vol. 386, no. 1. Elsevier, 2020.","mla":"Doubravská, Lenka, et al. “Human Myotubularin-Related Protein 9 Regulates ER-to-Golgi Trafficking and Modulates WNT3A Secretion.” Experimental Cell Research, vol. 386, no. 1, 111709, Elsevier, 2020, doi:10.1016/j.yexcr.2019.111709.","ama":"Doubravská L, Dostál V, Knop F, Libusová L, Macůrková M. Human myotubularin-related protein 9 regulates ER-to-Golgi trafficking and modulates WNT3A secretion. Experimental Cell Research. 2020;386(1). doi:10.1016/j.yexcr.2019.111709","ista":"Doubravská L, Dostál V, Knop F, Libusová L, Macůrková M. 2020. Human myotubularin-related protein 9 regulates ER-to-Golgi trafficking and modulates WNT3A secretion. Experimental Cell Research. 386(1), 111709.","apa":"Doubravská, L., Dostál, V., Knop, F., Libusová, L., & Macůrková, M. (2020). Human myotubularin-related protein 9 regulates ER-to-Golgi trafficking and modulates WNT3A secretion. Experimental Cell Research. Elsevier. https://doi.org/10.1016/j.yexcr.2019.111709","short":"L. Doubravská, V. Dostál, F. Knop, L. Libusová, M. Macůrková, Experimental Cell Research 386 (2020).","chicago":"Doubravská, Lenka, Vojtěch Dostál, Filip Knop, Lenka Libusová, and Marie Macůrková. “Human Myotubularin-Related Protein 9 Regulates ER-to-Golgi Trafficking and Modulates WNT3A Secretion.” Experimental Cell Research. Elsevier, 2020. https://doi.org/10.1016/j.yexcr.2019.111709."},"_id":"20806","date_updated":"2025-12-15T10:17:13Z","month":"01"},{"file_date_updated":"2025-03-11T08:27:40Z","oa":1,"issue":"9","doi":"10.17912/MICROPUB.BIOLOGY.000303","department":[{"_id":"MaDe"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","day":"20","publication_status":"published","status":"public","volume":2020,"date_created":"2025-03-07T08:21:51Z","article_type":"original","article_number":"303","OA_type":"gold","pmid":1,"oa_version":"Published Version","intvolume":" 2020","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"external_id":{"pmid":["33005885"]},"year":"2020","acknowledgement":"We thank Maureen Barr, Martin Harterink, Max Heiman and Inna Nechipurenko for reagents, the Caenorhabditis Genetics Center for strains, and the Sengupta lab for comments and advice.\r\nThis work was funded in part by the NIH (R35 GM122463 – P.S., and F32 DC018453 – A.P.), and the EMBO (ALTF 302-2019 – N.A-W.).","OA_place":"publisher","file":[{"file_size":1486239,"checksum":"14a7cad20775521ce85e0e3c77aa7936","date_created":"2025-03-11T08:27:40Z","file_name":"2020_MicroPublBio_Kazatskaya.pdf","creator":"dernst","file_id":"19383","relation":"main_file","content_type":"application/pdf","success":1,"access_level":"open_access","date_updated":"2025-03-11T08:27:40Z"}],"publisher":"Caltech Library","language":[{"iso":"eng"}],"month":"09","_id":"19306","citation":{"short":"A. Kazatskaya, L. Yuan, N.P. Amin-Wetzel, A. Philbrook, M. de Bono, P. Sengupta, MicroPublication Biology 2020 (2020).","apa":"Kazatskaya, A., Yuan, L., Amin-Wetzel, N. P., Philbrook, A., de Bono, M., & Sengupta, P. (2020). The URX oxygen-sensing neurons in C. elegans are ciliated. MicroPublication Biology. Caltech Library. https://doi.org/10.17912/MICROPUB.BIOLOGY.000303","ista":"Kazatskaya A, Yuan L, Amin-Wetzel NP, Philbrook A, de Bono M, Sengupta P. 2020. The URX oxygen-sensing neurons in C. elegans are ciliated. microPublication Biology. 2020(9), 303.","mla":"Kazatskaya, Anna, et al. “The URX Oxygen-Sensing Neurons in C. Elegans Are Ciliated.” MicroPublication Biology, vol. 2020, no. 9, 303, Caltech Library, 2020, doi:10.17912/MICROPUB.BIOLOGY.000303.","ama":"Kazatskaya A, Yuan L, Amin-Wetzel NP, Philbrook A, de Bono M, Sengupta P. The URX oxygen-sensing neurons in C. elegans are ciliated. microPublication Biology. 2020;2020(9). doi:10.17912/MICROPUB.BIOLOGY.000303","ieee":"A. Kazatskaya, L. Yuan, N. P. Amin-Wetzel, A. Philbrook, M. de Bono, and P. Sengupta, “The URX oxygen-sensing neurons in C. elegans are ciliated,” microPublication Biology, vol. 2020, no. 9. Caltech Library, 2020.","chicago":"Kazatskaya, Anna, Lisa Yuan, Niko Paresh Amin-Wetzel, Alison Philbrook, Mario de Bono, and Piali Sengupta. “The URX Oxygen-Sensing Neurons in C. Elegans Are Ciliated.” MicroPublication Biology. Caltech Library, 2020. https://doi.org/10.17912/MICROPUB.BIOLOGY.000303."},"date_updated":"2025-03-11T08:30:41Z","date_published":"2020-09-20T00:00:00Z","DOAJ_listed":"1","type":"journal_article","has_accepted_license":"1","title":"The URX oxygen-sensing neurons in C. elegans are ciliated","author":[{"full_name":"Kazatskaya, Anna","last_name":"Kazatskaya","first_name":"Anna"},{"full_name":"Yuan, Lisa","last_name":"Yuan","first_name":"Lisa"},{"last_name":"Amin-Wetzel","id":"E95D3014-9D8C-11E9-9C80-D2F8E5697425","first_name":"Niko Paresh","full_name":"Amin-Wetzel, Niko Paresh"},{"full_name":"Philbrook, Alison","first_name":"Alison","last_name":"Philbrook"},{"orcid":"0000-0001-8347-0443","first_name":"Mario","id":"4E3FF80E-F248-11E8-B48F-1D18A9856A87","last_name":"de Bono","full_name":"de Bono, Mario"},{"first_name":"Piali","last_name":"Sengupta","full_name":"Sengupta, Piali"}],"article_processing_charge":"Yes","publication_identifier":{"eissn":["2578-9430"]},"quality_controlled":"1","publication":"microPublication Biology","ddc":["570"]},{"intvolume":" 2","external_id":{"arxiv":["1903.04046"]},"scopus_import":"1","abstract":[{"text":"We give the first mathematically rigorous justification of the local density approximation in density functional theory. We provide a quantitative estimate on the difference between the grand-canonical Levy–Lieb energy of a given density (the lowest possible energy of all quantum states having this density) and the integral over the uniform electron gas energy of this density. The error involves gradient terms and justifies the use of the local density approximation in the situation where the density is very flat on sufficiently large regions in space.","lang":"eng"}],"volume":2,"date_created":"2024-01-28T23:01:44Z","article_type":"original","oa_version":"Preprint","day":"01","doi":"10.2140/paa.2020.2.35","department":[{"_id":"RoSe"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","publication_status":"published","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.1903.04046"}],"oa":1,"issue":"1","publication_identifier":{"eissn":["2578-5885"],"issn":["2578-5893"]},"quality_controlled":"1","article_processing_charge":"No","publication":"Pure and Applied Analysis","type":"journal_article","date_published":"2020-01-01T00:00:00Z","title":" The local density approximation in density functional theory","author":[{"full_name":"Lewin, Mathieu","last_name":"Lewin","first_name":"Mathieu"},{"full_name":"Lieb, Elliott H.","last_name":"Lieb","first_name":"Elliott H."},{"orcid":"0000-0002-6781-0521","last_name":"Seiringer","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87","first_name":"Robert","full_name":"Seiringer, Robert"}],"arxiv":1,"month":"01","_id":"14891","date_updated":"2024-10-09T21:08:02Z","citation":{"chicago":"Lewin, Mathieu, Elliott H. Lieb, and Robert Seiringer. “ The Local Density Approximation in Density Functional Theory.” Pure and Applied Analysis. Mathematical Sciences Publishers, 2020. https://doi.org/10.2140/paa.2020.2.35.","ista":"Lewin M, Lieb EH, Seiringer R. 2020. The local density approximation in density functional theory. Pure and Applied Analysis. 2(1), 35–73.","short":"M. Lewin, E.H. Lieb, R. Seiringer, Pure and Applied Analysis 2 (2020) 35–73.","apa":"Lewin, M., Lieb, E. H., & Seiringer, R. (2020). The local density approximation in density functional theory. Pure and Applied Analysis. Mathematical Sciences Publishers. https://doi.org/10.2140/paa.2020.2.35","ieee":"M. Lewin, E. H. Lieb, and R. Seiringer, “ The local density approximation in density functional theory,” Pure and Applied Analysis, vol. 2, no. 1. Mathematical Sciences Publishers, pp. 35–73, 2020.","mla":"Lewin, Mathieu, et al. “ The Local Density Approximation in Density Functional Theory.” Pure and Applied Analysis, vol. 2, no. 1, Mathematical Sciences Publishers, 2020, pp. 35–73, doi:10.2140/paa.2020.2.35.","ama":"Lewin M, Lieb EH, Seiringer R. The local density approximation in density functional theory. Pure and Applied Analysis. 2020;2(1):35-73. doi:10.2140/paa.2020.2.35"},"page":"35-73","corr_author":"1","publisher":"Mathematical Sciences Publishers","language":[{"iso":"eng"}],"year":"2020"},{"issue":"5","oa":1,"file_date_updated":"2024-02-28T12:39:56Z","keyword":["Plant Science","Molecular Biology"],"status":"public","publication_status":"published","day":"04","department":[{"_id":"EvBe"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.1016/j.molp.2020.02.012","oa_version":"Published Version","pmid":1,"abstract":[{"text":"Protein abundance and localization at the plasma membrane (PM) shapes plant development and mediates adaptation to changing environmental conditions. It is regulated by ubiquitination, a post-translational modification crucial for the proper sorting of endocytosed PM proteins to the vacuole for subsequent degradation. To understand the significance and the variety of roles played by this reversible modification, the function of ubiquitin receptors, which translate the ubiquitin signature into a cellular response, needs to be elucidated. In this study, we show that TOL (TOM1-like) proteins function in plants as multivalent ubiquitin receptors, governing ubiquitinated cargo delivery to the vacuole via the conserved Endosomal Sorting Complex Required for Transport (ESCRT) pathway. TOL2 and TOL6 interact with components of the ESCRT machinery and bind to K63-linked ubiquitin via two tandemly arranged conserved ubiquitin-binding domains. Mutation of these domains results not only in a loss of ubiquitin binding but also altered localization, abolishing TOL6 ubiquitin receptor activity. Function and localization of TOL6 is itself regulated by ubiquitination, whereby TOL6 ubiquitination potentially modulates degradation of PM-localized cargoes, assisting in the fine-tuning of the delicate interplay between protein recycling and downregulation. Taken together, our findings demonstrate the function and regulation of a ubiquitin receptor that mediates vacuolar degradation of PM proteins in higher plants.","lang":"eng"}],"article_type":"original","date_created":"2024-02-28T08:55:56Z","volume":13,"external_id":{"pmid":["32087370"]},"tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"intvolume":" 13","year":"2020","_id":"15037","date_updated":"2024-02-28T12:41:52Z","page":"717-731","citation":{"chicago":"Moulinier-Anzola, Jeanette, Maximilian Schwihla, Lucinda De-Araújo, Christina Artner, Lisa Jörg, Nataliia Konstantinova, Christian Luschnig, and Barbara Korbei. “TOLs Function as Ubiquitin Receptors in the Early Steps of the ESCRT Pathway in Higher Plants.” Molecular Plant. Elsevier, 2020. https://doi.org/10.1016/j.molp.2020.02.012.","ista":"Moulinier-Anzola J, Schwihla M, De-Araújo L, Artner C, Jörg L, Konstantinova N, Luschnig C, Korbei B. 2020. TOLs function as ubiquitin receptors in the early steps of the ESCRT pathway in higher plants. Molecular Plant. 13(5), 717–731.","short":"J. Moulinier-Anzola, M. Schwihla, L. De-Araújo, C. Artner, L. Jörg, N. Konstantinova, C. Luschnig, B. Korbei, Molecular Plant 13 (2020) 717–731.","apa":"Moulinier-Anzola, J., Schwihla, M., De-Araújo, L., Artner, C., Jörg, L., Konstantinova, N., … Korbei, B. (2020). TOLs function as ubiquitin receptors in the early steps of the ESCRT pathway in higher plants. Molecular Plant. Elsevier. https://doi.org/10.1016/j.molp.2020.02.012","ieee":"J. Moulinier-Anzola et al., “TOLs function as ubiquitin receptors in the early steps of the ESCRT pathway in higher plants,” Molecular Plant, vol. 13, no. 5. Elsevier, pp. 717–731, 2020.","mla":"Moulinier-Anzola, Jeanette, et al. “TOLs Function as Ubiquitin Receptors in the Early Steps of the ESCRT Pathway in Higher Plants.” Molecular Plant, vol. 13, no. 5, Elsevier, 2020, pp. 717–31, doi:10.1016/j.molp.2020.02.012.","ama":"Moulinier-Anzola J, Schwihla M, De-Araújo L, et al. TOLs function as ubiquitin receptors in the early steps of the ESCRT pathway in higher plants. Molecular Plant. 2020;13(5):717-731. doi:10.1016/j.molp.2020.02.012"},"month":"05","language":[{"iso":"eng"}],"publisher":"Elsevier","file":[{"content_type":"application/pdf","relation":"main_file","access_level":"open_access","date_updated":"2024-02-28T12:39:56Z","success":1,"file_name":"2020_MolecularPlant_MoulinierAnzola.pdf","checksum":"c538a5008f7827f62d17d40a3bfabe65","file_size":3089212,"date_created":"2024-02-28T12:39:56Z","file_id":"15038","creator":"dernst"}],"author":[{"full_name":"Moulinier-Anzola, Jeanette","last_name":"Moulinier-Anzola","first_name":"Jeanette"},{"last_name":"Schwihla","first_name":"Maximilian","full_name":"Schwihla, Maximilian"},{"first_name":"Lucinda","last_name":"De-Araújo","full_name":"De-Araújo, Lucinda"},{"full_name":"Artner, Christina","id":"45DF286A-F248-11E8-B48F-1D18A9856A87","first_name":"Christina","last_name":"Artner"},{"full_name":"Jörg, Lisa","last_name":"Jörg","first_name":"Lisa"},{"last_name":"Konstantinova","first_name":"Nataliia","full_name":"Konstantinova, Nataliia"},{"full_name":"Luschnig, Christian","last_name":"Luschnig","first_name":"Christian"},{"first_name":"Barbara","last_name":"Korbei","full_name":"Korbei, Barbara"}],"title":"TOLs function as ubiquitin receptors in the early steps of the ESCRT pathway in higher plants","type":"journal_article","has_accepted_license":"1","date_published":"2020-05-04T00:00:00Z","ddc":["580"],"publication":"Molecular Plant","quality_controlled":"1","publication_identifier":{"issn":["1674-2052"]},"article_processing_charge":"No"},{"publication":"Proceedings of the 34th AAAI Conference on Artificial Intelligence","quality_controlled":"1","publication_identifier":{"issn":["2374-3468"]},"article_processing_charge":"No","author":[{"full_name":"Brázdil, Tomáš","last_name":"Brázdil","first_name":"Tomáš"},{"full_name":"Chatterjee, Krishnendu","last_name":"Chatterjee","first_name":"Krishnendu","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4561-241X"},{"last_name":"Novotný","first_name":"Petr","full_name":"Novotný, Petr"},{"full_name":"Vahala, Jiří","first_name":"Jiří","last_name":"Vahala"}],"title":"Reinforcement learning of risk-constrained policies in Markov decision processes","arxiv":1,"type":"journal_article","date_published":"2020-04-03T00:00:00Z","_id":"15055","date_updated":"2025-04-15T06:30:08Z","citation":{"ieee":"T. Brázdil, K. Chatterjee, P. Novotný, and J. Vahala, “Reinforcement learning of risk-constrained policies in Markov decision processes,” Proceedings of the 34th AAAI Conference on Artificial Intelligence, vol. 34, no. 06. Association for the Advancement of Artificial Intelligence, pp. 9794–9801, 2020.","ama":"Brázdil T, Chatterjee K, Novotný P, Vahala J. Reinforcement learning of risk-constrained policies in Markov decision processes. Proceedings of the 34th AAAI Conference on Artificial Intelligence. 2020;34(06):9794-9801. doi:10.1609/aaai.v34i06.6531","mla":"Brázdil, Tomáš, et al. “Reinforcement Learning of Risk-Constrained Policies in Markov Decision Processes.” Proceedings of the 34th AAAI Conference on Artificial Intelligence, vol. 34, no. 06, Association for the Advancement of Artificial Intelligence, 2020, pp. 9794–801, doi:10.1609/aaai.v34i06.6531.","ista":"Brázdil T, Chatterjee K, Novotný P, Vahala J. 2020. Reinforcement learning of risk-constrained policies in Markov decision processes. Proceedings of the 34th AAAI Conference on Artificial Intelligence. 34(06), 9794–9801.","short":"T. Brázdil, K. Chatterjee, P. Novotný, J. Vahala, Proceedings of the 34th AAAI Conference on Artificial Intelligence 34 (2020) 9794–9801.","apa":"Brázdil, T., Chatterjee, K., Novotný, P., & Vahala, J. (2020). Reinforcement learning of risk-constrained policies in Markov decision processes. Proceedings of the 34th AAAI Conference on Artificial Intelligence. New York, NY, United States: Association for the Advancement of Artificial Intelligence. https://doi.org/10.1609/aaai.v34i06.6531","chicago":"Brázdil, Tomáš, Krishnendu Chatterjee, Petr Novotný, and Jiří Vahala. “Reinforcement Learning of Risk-Constrained Policies in Markov Decision Processes.” Proceedings of the 34th AAAI Conference on Artificial Intelligence. Association for the Advancement of Artificial Intelligence, 2020. https://doi.org/10.1609/aaai.v34i06.6531."},"page":"9794-9801","month":"04","language":[{"iso":"eng"}],"publisher":"Association for the Advancement of Artificial Intelligence","acknowledgement":"Krishnendu Chatterjee is supported by the Austrian Science Fund (FWF) NFN Grant No. S11407-N23 (RiSE/SHiNE), and COST Action GAMENET. Tomas Brazdil is supported by the Grant Agency of Masaryk University grant no. MUNI/G/0739/2017 and by the Czech Science Foundation grant No. 18-11193S. Petr Novotny and Jirı Vahala are supported by the Czech Science Foundation grant No. GJ19-15134Y.","year":"2020","conference":{"name":"AAAI: Conference on Artificial Intelligence","location":"New York, NY, United States","start_date":"2020-02-07","end_date":"2020-02-12"},"external_id":{"arxiv":["2002.12086"]},"intvolume":" 34","oa_version":"Preprint","abstract":[{"lang":"eng","text":"Markov decision processes (MDPs) are the defacto framework for sequential decision making in the presence of stochastic uncertainty. A classical optimization criterion for MDPs is to maximize the expected discounted-sum payoff, which ignores low probability catastrophic events with highly negative impact on the system. On the other hand, risk-averse policies require the probability of undesirable events to be below a given threshold, but they do not account for optimization of the expected payoff. We consider MDPs with discounted-sum payoff with failure states which represent catastrophic outcomes. The objective of risk-constrained planning is to maximize the expected discounted-sum payoff among risk-averse policies that ensure the probability to encounter a failure state is below a desired threshold. Our main contribution is an efficient risk-constrained planning algorithm that combines UCT-like search with a predictor learned through interaction with the MDP (in the style of AlphaZero) and with a risk-constrained action selection via linear programming. We demonstrate the effectiveness of our approach with experiments on classical MDPs from the literature, including benchmarks with an order of 106 states."}],"article_type":"original","volume":34,"date_created":"2024-03-04T08:07:22Z","status":"public","publication_status":"published","day":"03","project":[{"name":"Game Theory","grant_number":"S11407","_id":"25863FF4-B435-11E9-9278-68D0E5697425","call_identifier":"FWF"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","department":[{"_id":"KrCh"}],"doi":"10.1609/aaai.v34i06.6531","issue":"06","oa":1,"main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2002.12086"}],"keyword":["General Medicine"]},{"year":"2020","acknowledgement":"This research was supported by grants NRF-2019R1A3B2067745 and NRF-2017R1A5A1015366 funded by the Korean Government (MSIT) through the National Research Foundation (NRF) of Korea to S.-J.V.L. and by grant Basic Science Research Program (No. 2019R1A2C2009440) funded by the Korean Government (MSIT) through the NRF of Korea to K.-T.K. ","file":[{"creator":"dernst","file_id":"15058","date_created":"2024-03-04T09:46:41Z","file_size":1864415,"checksum":"a37157cd0de709dce5fe03f4a31cd0b6","file_name":"2020_ScienceAdvances_Park.pdf","success":1,"access_level":"open_access","date_updated":"2024-03-04T09:46:41Z","relation":"main_file","content_type":"application/pdf"}],"language":[{"iso":"eng"}],"publisher":"American Association for the Advancement of Science","date_updated":"2024-03-04T09:52:09Z","_id":"15057","citation":{"ieee":"S. Park et al., “VRK-1 extends life span by activation of AMPK via phosphorylation,” Science Advances, vol. 6, no. 27. American Association for the Advancement of Science, 2020.","ama":"Park S, Artan M, Han SH, et al. VRK-1 extends life span by activation of AMPK via phosphorylation. Science Advances. 2020;6(27). doi:10.1126/sciadv.aaw7824","mla":"Park, Sangsoon, et al. “VRK-1 Extends Life Span by Activation of AMPK via Phosphorylation.” Science Advances, vol. 6, no. 27, aaw7824, American Association for the Advancement of Science, 2020, doi:10.1126/sciadv.aaw7824.","ista":"Park S, Artan M, Han SH, Park H-EH, Jung Y, Hwang AB, Shin WS, Kim K-T, Lee S-JV. 2020. VRK-1 extends life span by activation of AMPK via phosphorylation. Science Advances. 6(27), aaw7824.","apa":"Park, S., Artan, M., Han, S. H., Park, H.-E. H., Jung, Y., Hwang, A. B., … Lee, S.-J. V. (2020). VRK-1 extends life span by activation of AMPK via phosphorylation. Science Advances. American Association for the Advancement of Science. https://doi.org/10.1126/sciadv.aaw7824","short":"S. Park, M. Artan, S.H. Han, H.-E.H. Park, Y. Jung, A.B. Hwang, W.S. Shin, K.-T. Kim, S.-J.V. Lee, Science Advances 6 (2020).","chicago":"Park, Sangsoon, Murat Artan, Seung Hyun Han, Hae-Eun H. Park, Yoonji Jung, Ara B. Hwang, Won Sik Shin, Kyong-Tai Kim, and Seung-Jae V. Lee. “VRK-1 Extends Life Span by Activation of AMPK via Phosphorylation.” Science Advances. American Association for the Advancement of Science, 2020. https://doi.org/10.1126/sciadv.aaw7824."},"month":"07","date_published":"2020-07-01T00:00:00Z","has_accepted_license":"1","type":"journal_article","author":[{"last_name":"Park","first_name":"Sangsoon","full_name":"Park, Sangsoon"},{"full_name":"Artan, Murat","first_name":"Murat","id":"C407B586-6052-11E9-B3AE-7006E6697425","last_name":"Artan","orcid":"0000-0001-8945-6992"},{"last_name":"Han","first_name":"Seung Hyun","full_name":"Han, Seung Hyun"},{"full_name":"Park, Hae-Eun H.","last_name":"Park","first_name":"Hae-Eun H."},{"first_name":"Yoonji","last_name":"Jung","full_name":"Jung, Yoonji"},{"last_name":"Hwang","first_name":"Ara B.","full_name":"Hwang, Ara B."},{"full_name":"Shin, Won Sik","last_name":"Shin","first_name":"Won Sik"},{"full_name":"Kim, Kyong-Tai","first_name":"Kyong-Tai","last_name":"Kim"},{"last_name":"Lee","first_name":"Seung-Jae V.","full_name":"Lee, Seung-Jae V."}],"title":"VRK-1 extends life span by activation of AMPK via phosphorylation","article_processing_charge":"No","quality_controlled":"1","publication_identifier":{"eissn":["2375-2548"]},"publication":"Science Advances","ddc":["570"],"file_date_updated":"2024-03-04T09:46:41Z","oa":1,"issue":"27","department":[{"_id":"MaDe"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.1126/sciadv.aaw7824","day":"01","publication_status":"published","status":"public","article_type":"original","date_created":"2024-03-04T09:41:57Z","volume":6,"abstract":[{"text":"Vaccinia virus–related kinase (VRK) is an evolutionarily conserved nuclear protein kinase. VRK-1, the single Caenorhabditis elegans VRK ortholog, functions in cell division and germline proliferation. However, the role of VRK-1 in postmitotic cells and adult life span remains unknown. Here, we show that VRK-1 increases organismal longevity by activating the cellular energy sensor, AMP-activated protein kinase (AMPK), via direct phosphorylation. We found that overexpression of vrk-1 in the soma of adult C. elegans increased life span and, conversely, inhibition of vrk-1 decreased life span. In addition, vrk-1 was required for longevity conferred by mutations that inhibit C. elegans mitochondrial respiration, which requires AMPK. VRK-1 directly phosphorylated and up-regulated AMPK in both C. elegans and cultured human cells. Thus, our data show that the somatic nuclear kinase, VRK-1, promotes longevity through AMPK activation, and this function appears to be conserved between C. elegans and humans.","lang":"eng"}],"article_number":"aaw7824","license":"https://creativecommons.org/licenses/by-nc/4.0/","oa_version":"Published Version","intvolume":" 6","tmp":{"image":"/images/cc_by_nc.png","short":"CC BY-NC (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)"}},{"publication":"14th European Conference on Antennas and Propagation","quality_controlled":"1","publication_identifier":{"eisbn":["9788831299008"]},"article_processing_charge":"No","author":[{"last_name":"Wasiak","first_name":"Michal","full_name":"Wasiak, Michal"},{"full_name":"Botello, Gabriel Santamaria","first_name":"Gabriel Santamaria","last_name":"Botello"},{"last_name":"Abdalmalak","first_name":"Kerlos Atia","full_name":"Abdalmalak, Kerlos Atia"},{"full_name":"Sedlmeir, Florian","first_name":"Florian","last_name":"Sedlmeir"},{"orcid":"0000-0001-6249-5860","full_name":"Rueda Sanchez, Alfredo R","first_name":"Alfredo R","id":"3B82B0F8-F248-11E8-B48F-1D18A9856A87","last_name":"Rueda Sanchez"},{"full_name":"Segovia-Vargas, Daniel","first_name":"Daniel","last_name":"Segovia-Vargas"},{"first_name":"Harald G. L.","last_name":"Schwefel","full_name":"Schwefel, Harald G. L."},{"first_name":"Luis Enrique Garcia","last_name":"Munoz","full_name":"Munoz, Luis Enrique Garcia"}],"oa_version":"None","title":"Compact millimeter and submillimeter-wave photonic radiometer for cubesats","abstract":[{"lang":"eng","text":"In this paper we present a room temperature radiometer that can eliminate the need of using cryostats in satellite payload reducing its weight and improving reliability. The proposed radiometer is based on an electro-optic upconverter that boosts up microwave photons energy by upconverting them into an optical domain what makes them immune to thermal noise even if operating at room temperature. The converter uses a high-quality factor whispering gallery\r\nmode (WGM) resonator providing naturally narrow bandwidth and therefore might be useful for applications like microwave hyperspectral sensing. The upconversion process is explained by\r\nproviding essential information about photon conversion efficiency and sensitivity. To prove the concept, we describe an experiment which shows state-of-the-art photon conversion efficiency n=10-5 per mW of pump power at the frequency of 80 GHz."}],"type":"conference","date_published":"2020-07-08T00:00:00Z","date_created":"2024-03-04T09:57:48Z","status":"public","_id":"15059","date_updated":"2024-03-04T10:02:49Z","citation":{"chicago":"Wasiak, Michal, Gabriel Santamaria Botello, Kerlos Atia Abdalmalak, Florian Sedlmeir, Alfredo R Rueda Sanchez, Daniel Segovia-Vargas, Harald G. L. Schwefel, and Luis Enrique Garcia Munoz. “Compact Millimeter and Submillimeter-Wave Photonic Radiometer for Cubesats.” In 14th European Conference on Antennas and Propagation. IEEE, 2020. https://doi.org/10.23919/eucap48036.2020.9135962.","ista":"Wasiak M, Botello GS, Abdalmalak KA, Sedlmeir F, Rueda Sanchez AR, Segovia-Vargas D, Schwefel HGL, Munoz LEG. 2020. Compact millimeter and submillimeter-wave photonic radiometer for cubesats. 14th European Conference on Antennas and Propagation. EuCAP: European Conference on Antennas and Propagation.","short":"M. Wasiak, G.S. Botello, K.A. Abdalmalak, F. Sedlmeir, A.R. Rueda Sanchez, D. Segovia-Vargas, H.G.L. Schwefel, L.E.G. Munoz, in:, 14th European Conference on Antennas and Propagation, IEEE, 2020.","apa":"Wasiak, M., Botello, G. S., Abdalmalak, K. A., Sedlmeir, F., Rueda Sanchez, A. R., Segovia-Vargas, D., … Munoz, L. E. G. (2020). Compact millimeter and submillimeter-wave photonic radiometer for cubesats. In 14th European Conference on Antennas and Propagation. Copenhagen, Denmark: IEEE. https://doi.org/10.23919/eucap48036.2020.9135962","ieee":"M. Wasiak et al., “Compact millimeter and submillimeter-wave photonic radiometer for cubesats,” in 14th European Conference on Antennas and Propagation, Copenhagen, Denmark, 2020.","ama":"Wasiak M, Botello GS, Abdalmalak KA, et al. Compact millimeter and submillimeter-wave photonic radiometer for cubesats. In: 14th European Conference on Antennas and Propagation. IEEE; 2020. doi:10.23919/eucap48036.2020.9135962","mla":"Wasiak, Michal, et al. “Compact Millimeter and Submillimeter-Wave Photonic Radiometer for Cubesats.” 14th European Conference on Antennas and Propagation, IEEE, 2020, doi:10.23919/eucap48036.2020.9135962."},"month":"07","language":[{"iso":"eng"}],"publication_status":"published","publisher":"IEEE","day":"08","department":[{"_id":"JoFi"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.23919/eucap48036.2020.9135962","acknowledgement":"This work has been financially supported by Comunidad de Madrid S2018/NMT-4333 ARTINLARA-CM projects, and “FUNDACIÓN SENER” REFTA projects.","year":"2020","conference":{"name":"EuCAP: European Conference on Antennas and Propagation","end_date":"2020-03-20","start_date":"2020-03-15","location":"Copenhagen, Denmark"}},{"acknowledgement":"Partially supported by ERC Advanced Grant No. 338804. This project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie Grant Agreement No. 66538","year":"2020","language":[{"iso":"eng"}],"corr_author":"1","publisher":"Mathematical Sciences Publishers","_id":"15063","page":"101-146","date_updated":"2025-07-10T11:51:06Z","citation":{"chicago":"Cipolloni, Giorgio, László Erdös, and Dominik J Schröder. “Optimal Lower Bound on the Least Singular Value of the Shifted Ginibre Ensemble.” Probability and Mathematical Physics. Mathematical Sciences Publishers, 2020. https://doi.org/10.2140/pmp.2020.1.101.","ieee":"G. Cipolloni, L. Erdös, and D. J. Schröder, “Optimal lower bound on the least singular value of the shifted Ginibre ensemble,” Probability and Mathematical Physics, vol. 1, no. 1. Mathematical Sciences Publishers, pp. 101–146, 2020.","ama":"Cipolloni G, Erdös L, Schröder DJ. Optimal lower bound on the least singular value of the shifted Ginibre ensemble. Probability and Mathematical Physics. 2020;1(1):101-146. doi:10.2140/pmp.2020.1.101","mla":"Cipolloni, Giorgio, et al. “Optimal Lower Bound on the Least Singular Value of the Shifted Ginibre Ensemble.” Probability and Mathematical Physics, vol. 1, no. 1, Mathematical Sciences Publishers, 2020, pp. 101–46, doi:10.2140/pmp.2020.1.101.","ista":"Cipolloni G, Erdös L, Schröder DJ. 2020. Optimal lower bound on the least singular value of the shifted Ginibre ensemble. Probability and Mathematical Physics. 1(1), 101–146.","apa":"Cipolloni, G., Erdös, L., & Schröder, D. J. (2020). Optimal lower bound on the least singular value of the shifted Ginibre ensemble. Probability and Mathematical Physics. Mathematical Sciences Publishers. https://doi.org/10.2140/pmp.2020.1.101","short":"G. Cipolloni, L. Erdös, D.J. Schröder, Probability and Mathematical Physics 1 (2020) 101–146."},"month":"11","arxiv":1,"ec_funded":1,"author":[{"orcid":"0000-0002-4901-7992","last_name":"Cipolloni","first_name":"Giorgio","id":"42198EFA-F248-11E8-B48F-1D18A9856A87","full_name":"Cipolloni, Giorgio"},{"orcid":"0000-0001-5366-9603","last_name":"Erdös","id":"4DBD5372-F248-11E8-B48F-1D18A9856A87","first_name":"László","full_name":"Erdös, László"},{"id":"408ED176-F248-11E8-B48F-1D18A9856A87","first_name":"Dominik J","last_name":"Schröder","full_name":"Schröder, Dominik J","orcid":"0000-0002-2904-1856"}],"title":"Optimal lower bound on the least singular value of the shifted Ginibre ensemble","date_published":"2020-11-16T00:00:00Z","type":"journal_article","publication":"Probability and Mathematical Physics","article_processing_charge":"No","quality_controlled":"1","publication_identifier":{"issn":["2690-0998"]},"issue":"1","keyword":["General Medicine"],"main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.1908.01653"}],"oa":1,"publication_status":"published","status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","department":[{"_id":"LaEr"}],"doi":"10.2140/pmp.2020.1.101","day":"16","project":[{"_id":"258DCDE6-B435-11E9-9278-68D0E5697425","grant_number":"338804","call_identifier":"FP7","name":"Random matrices, universality and disordered quantum systems"},{"name":"International IST Doctoral Program","grant_number":"665385","_id":"2564DBCA-B435-11E9-9278-68D0E5697425","call_identifier":"H2020"}],"oa_version":"Preprint","article_type":"original","volume":1,"date_created":"2024-03-04T10:27:57Z","abstract":[{"text":"We consider the least singular value of a large random matrix with real or complex i.i.d. Gaussian entries shifted by a constant z∈C. We prove an optimal lower tail estimate on this singular value in the critical regime where z is around the spectral edge, thus improving the classical bound of Sankar, Spielman and Teng (SIAM J. Matrix Anal. Appl. 28:2 (2006), 446–476) for the particular shift-perturbation in the edge regime. Lacking Brézin–Hikami formulas in the real case, we rely on the superbosonization formula (Comm. Math. Phys. 283:2 (2008), 343–395).","lang":"eng"}],"scopus_import":"1","external_id":{"arxiv":["1908.01653"]},"intvolume":" 1"},{"issue":"4","oa":1,"file_date_updated":"2024-03-04T10:52:42Z","publication_status":"published","status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","department":[{"_id":"HeEd"}],"doi":"10.1007/s41468-020-00058-8","day":"01","oa_version":"Published Version","article_type":"original","date_created":"2024-03-04T10:47:49Z","volume":4,"abstract":[{"lang":"eng","text":"We call a continuous self-map that reveals itself through a discrete set of point-value pairs a sampled dynamical system. Capturing the available information with chain maps on Delaunay complexes, we use persistent homology to quantify the evidence of recurrent behavior. We establish a sampling theorem to recover the eigenspaces of the endomorphism on homology induced by the self-map. Using a combinatorial gradient flow arising from the discrete Morse theory for Čech and Delaunay complexes, we construct a chain map to transform the problem from the natural but expensive Čech complexes to the computationally efficient Delaunay triangulations. The fast chain map algorithm has applications beyond dynamical systems."}],"scopus_import":"1","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"intvolume":" 4","acknowledgement":"This research has been supported by the DFG Collaborative Research Center SFB/TRR 109 “Discretization in Geometry and Dynamics”, by Polish MNiSzW Grant No. 2621/7.PR/12/2013/2, by the Polish National Science Center under Maestro Grant No. 2014/14/A/ST1/00453 and Grant No. DEC-2013/09/N/ST6/02995. Open Access funding provided by Projekt DEAL.","year":"2020","language":[{"iso":"eng"}],"publisher":"Springer Nature","_id":"15064","citation":{"chicago":"Bauer, U., Herbert Edelsbrunner, Grzegorz Jablonski, and M. Mrozek. “Čech-Delaunay Gradient Flow and Homology Inference for Self-Maps.” Journal of Applied and Computational Topology. Springer Nature, 2020. https://doi.org/10.1007/s41468-020-00058-8.","ista":"Bauer U, Edelsbrunner H, Jablonski G, Mrozek M. 2020. Čech-Delaunay gradient flow and homology inference for self-maps. Journal of Applied and Computational Topology. 4(4), 455–480.","apa":"Bauer, U., Edelsbrunner, H., Jablonski, G., & Mrozek, M. (2020). Čech-Delaunay gradient flow and homology inference for self-maps. Journal of Applied and Computational Topology. Springer Nature. https://doi.org/10.1007/s41468-020-00058-8","short":"U. Bauer, H. Edelsbrunner, G. Jablonski, M. Mrozek, Journal of Applied and Computational Topology 4 (2020) 455–480.","ieee":"U. Bauer, H. Edelsbrunner, G. Jablonski, and M. Mrozek, “Čech-Delaunay gradient flow and homology inference for self-maps,” Journal of Applied and Computational Topology, vol. 4, no. 4. Springer Nature, pp. 455–480, 2020.","ama":"Bauer U, Edelsbrunner H, Jablonski G, Mrozek M. Čech-Delaunay gradient flow and homology inference for self-maps. Journal of Applied and Computational Topology. 2020;4(4):455-480. doi:10.1007/s41468-020-00058-8","mla":"Bauer, U., et al. “Čech-Delaunay Gradient Flow and Homology Inference for Self-Maps.” Journal of Applied and Computational Topology, vol. 4, no. 4, Springer Nature, 2020, pp. 455–80, doi:10.1007/s41468-020-00058-8."},"page":"455-480","date_updated":"2024-03-04T10:54:04Z","month":"12","file":[{"content_type":"application/pdf","relation":"main_file","date_updated":"2024-03-04T10:52:42Z","access_level":"open_access","success":1,"file_name":"2020_JourApplCompTopology_Bauer.pdf","date_created":"2024-03-04T10:52:42Z","file_size":851190,"checksum":"eed1168b6e66cd55272c19bb7fca8a1c","file_id":"15065","creator":"dernst"}],"author":[{"first_name":"U.","last_name":"Bauer","full_name":"Bauer, U."},{"last_name":"Edelsbrunner","first_name":"Herbert","id":"3FB178DA-F248-11E8-B48F-1D18A9856A87","full_name":"Edelsbrunner, Herbert","orcid":"0000-0002-9823-6833"},{"orcid":"0000-0002-3536-9866","last_name":"Jablonski","first_name":"Grzegorz","id":"4483EF78-F248-11E8-B48F-1D18A9856A87","full_name":"Jablonski, Grzegorz"},{"last_name":"Mrozek","first_name":"M.","full_name":"Mrozek, M."}],"title":"Čech-Delaunay gradient flow and homology inference for self-maps","date_published":"2020-12-01T00:00:00Z","has_accepted_license":"1","type":"journal_article","publication":"Journal of Applied and Computational Topology","ddc":["500"],"article_processing_charge":"Yes (via OA deal)","quality_controlled":"1","publication_identifier":{"eissn":["2367-1734"],"issn":["2367-1726"]}},{"publication_status":"published","language":[{"iso":"eng"}],"publisher":"European Mathematical Society","_id":"15070","date_updated":"2024-03-11T09:20:34Z","page":"1357-1417","citation":{"chicago":"Anderson, Lara, Tamás Hausel, Rafe Mazzeo, and Laura Schaposnik. “Geometry and Physics of Higgs Bundles.” Oberwolfach Reports. European Mathematical Society, 2020. https://doi.org/10.4171/owr/2019/23.","ista":"Anderson L, Hausel T, Mazzeo R, Schaposnik L. 2020. Geometry and physics of Higgs bundles. Oberwolfach Reports. 16(2), 1357–1417.","short":"L. Anderson, T. Hausel, R. Mazzeo, L. Schaposnik, Oberwolfach Reports 16 (2020) 1357–1417.","apa":"Anderson, L., Hausel, T., Mazzeo, R., & Schaposnik, L. (2020). Geometry and physics of Higgs bundles. Oberwolfach Reports. European Mathematical Society. https://doi.org/10.4171/owr/2019/23","ieee":"L. Anderson, T. Hausel, R. Mazzeo, and L. Schaposnik, “Geometry and physics of Higgs bundles,” Oberwolfach Reports, vol. 16, no. 2. European Mathematical Society, pp. 1357–1417, 2020.","ama":"Anderson L, Hausel T, Mazzeo R, Schaposnik L. Geometry and physics of Higgs bundles. Oberwolfach Reports. 2020;16(2):1357-1417. doi:10.4171/owr/2019/23","mla":"Anderson, Lara, et al. “Geometry and Physics of Higgs Bundles.” Oberwolfach Reports, vol. 16, no. 2, European Mathematical Society, 2020, pp. 1357–417, doi:10.4171/owr/2019/23."},"status":"public","month":"06","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","department":[{"_id":"TaHa"}],"doi":"10.4171/owr/2019/23","day":"04","issue":"2","year":"2020","keyword":["Organic Chemistry","Biochemistry"],"publication":"Oberwolfach Reports","article_processing_charge":"No","quality_controlled":"1","intvolume":" 16","publication_identifier":{"issn":["1660-8933"]},"oa_version":"None","author":[{"full_name":"Anderson, Lara","last_name":"Anderson","first_name":"Lara"},{"last_name":"Hausel","id":"4A0666D8-F248-11E8-B48F-1D18A9856A87","first_name":"Tamás","full_name":"Hausel, Tamás"},{"first_name":"Rafe","last_name":"Mazzeo","full_name":"Mazzeo, Rafe"},{"full_name":"Schaposnik, Laura","first_name":"Laura","last_name":"Schaposnik"}],"title":"Geometry and physics of Higgs bundles","article_type":"original","date_published":"2020-06-04T00:00:00Z","volume":16,"date_created":"2024-03-04T11:36:31Z","abstract":[{"lang":"eng","text":"This workshop focused on interactions between the various perspectives on the moduli space of Higgs bundles over a Riemann surface. This subject draws on algebraic geometry, geometric topology, geometric analysis and mathematical physics, and the goal was to promote interactions between these various branches of the subject. The main current directions of research were well represented by the participants, and the talks included many from both senior and junior participants."}],"type":"journal_article"},{"status":"public","publication_status":"published","day":"02","doi":"10.3390/ecm2020-07116","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","department":[{"_id":"FyKo"}],"oa":1,"file_date_updated":"2024-03-20T08:05:46Z","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"oa_version":"Published Version","abstract":[{"text":"A mesophilic methanogenic culture, designated JL01, was isolated from Holocene permafrost in the Russian Arctic [1]. After long-term extensive cultivation at 15°C it turned out to be a tied binary culture of archaeal (JL01) and bacterial (Sphaerochaeta associata GLS2) strains.\r\nStrain JL01 was a strict anaerobe and grew on methanol, acetate and methylamines as energy and carbon sources. Cells were irregular coccoid, non-motile, non-spore-forming, and Gram-stainpositive. Optimum conditions for growth were 24-28 oC, pH 6.8–7.3 and 0.075-0.1 M NaCl.\r\nPhylogenetic tree reconstructions based on 16S rRNA and concatenated alignment of broadly\r\nconserved protein-coding genes revealed its close relation to Methanosarcina mazei S-6\r\nT (similarity 99.5%). The comparison of whole genomic sequences (ANI) of the isolate and the type strain of M.mazei was 98.5%, which is higher than the values recommended for new species. Thus strain JL01 (=VKM B-2370=JCM 31898) represents the first M. mazei isolated from permanently subzero Arcticsediments. The long-term co-cultivation of JL01 with S. associata GLS2T showed the methane production without any additional carbon and energy sources. Genome analysis of S. associata GLS2T revealed putative genes involved in methanochondroithin catabolism.","lang":"eng"}],"date_created":"2024-03-04T11:41:31Z","month":"11","_id":"15071","date_updated":"2024-03-20T08:06:22Z","citation":{"chicago":"Oshurkova, Viktoriia, Olga Troshina, Vladimir Trubitsyn, Yana Ryzhmanova, Olga Bochkareva, and Viktoria Shcherbakova. “Characterization of Methanosarcina Mazei JL01 Isolated from Holocene Arctic Permafrost and Study of the Archaeon Cooperation with Bacterium Sphaerochaeta Associata GLS2T.” In Proceedings of 1st International Electronic Conference on Microbiology. MDPI, 2020. https://doi.org/10.3390/ecm2020-07116.","mla":"Oshurkova, Viktoriia, et al. “Characterization of Methanosarcina Mazei JL01 Isolated from Holocene Arctic Permafrost and Study of the Archaeon Cooperation with Bacterium Sphaerochaeta Associata GLS2T.” Proceedings of 1st International Electronic Conference on Microbiology, MDPI, 2020, doi:10.3390/ecm2020-07116.","ama":"Oshurkova V, Troshina O, Trubitsyn V, Ryzhmanova Y, Bochkareva O, Shcherbakova V. Characterization of methanosarcina mazei JL01 isolated from holocene arctic permafrost and study of the archaeon cooperation with bacterium Sphaerochaeta associata GLS2T. In: Proceedings of 1st International Electronic Conference on Microbiology. MDPI; 2020. doi:10.3390/ecm2020-07116","ieee":"V. Oshurkova, O. Troshina, V. Trubitsyn, Y. Ryzhmanova, O. Bochkareva, and V. Shcherbakova, “Characterization of methanosarcina mazei JL01 isolated from holocene arctic permafrost and study of the archaeon cooperation with bacterium Sphaerochaeta associata GLS2T,” in Proceedings of 1st International Electronic Conference on Microbiology, Virtual, 2020.","short":"V. Oshurkova, O. Troshina, V. Trubitsyn, Y. Ryzhmanova, O. Bochkareva, V. Shcherbakova, in:, Proceedings of 1st International Electronic Conference on Microbiology, MDPI, 2020.","apa":"Oshurkova, V., Troshina, O., Trubitsyn, V., Ryzhmanova, Y., Bochkareva, O., & Shcherbakova, V. (2020). Characterization of methanosarcina mazei JL01 isolated from holocene arctic permafrost and study of the archaeon cooperation with bacterium Sphaerochaeta associata GLS2T. In Proceedings of 1st International Electronic Conference on Microbiology. Virtual: MDPI. https://doi.org/10.3390/ecm2020-07116","ista":"Oshurkova V, Troshina O, Trubitsyn V, Ryzhmanova Y, Bochkareva O, Shcherbakova V. 2020. Characterization of methanosarcina mazei JL01 isolated from holocene arctic permafrost and study of the archaeon cooperation with bacterium Sphaerochaeta associata GLS2T. Proceedings of 1st International Electronic Conference on Microbiology. ECM: Electronic Conference on Microbiology."},"publisher":"MDPI","language":[{"iso":"eng"}],"file":[{"file_id":"15127","creator":"dernst","file_name":"2020_ECM_Oshurkova.pdf","date_created":"2024-03-20T08:05:46Z","file_size":595543,"checksum":"d1914af7811a21a4b2744eb51b5834e3","date_updated":"2024-03-20T08:05:46Z","access_level":"open_access","success":1,"content_type":"application/pdf","relation":"main_file"}],"acknowledgement":"The work was supported by of Russian Foundation of Basic Research: grant № 19-04-00831 for Viktoria Shcherbakova and Olga Troshina, grant № 18-34-00334 for Viktoriia Oshurkova and Vladimir Trubitsyn. \r\nWe thank Dr Natalia Suzina (IBPM RAS, Federal Research Center Pushchino Center for\r\nBiological Research RAS) for the help with the microscopic studies, respectively; Dr. Margarita Meyer (Division of Genetics, Department of Medicine, BWH and HMS, USA) and Dr Fedor Kondrashov (IST, Austria) for their help in obtaining the genomic sequence of strain JL01. ","conference":{"start_date":"2020-11-02","location":"Virtual","end_date":"2020-11-30","name":"ECM: Electronic Conference on Microbiology"},"year":"2020","ddc":["570"],"publication":"Proceedings of 1st International Electronic Conference on Microbiology","quality_controlled":"1","article_processing_charge":"Yes","title":"Characterization of methanosarcina mazei JL01 isolated from holocene arctic permafrost and study of the archaeon cooperation with bacterium Sphaerochaeta associata GLS2T","author":[{"full_name":"Oshurkova, Viktoriia","last_name":"Oshurkova","first_name":"Viktoriia"},{"full_name":"Troshina, Olga","first_name":"Olga","last_name":"Troshina"},{"full_name":"Trubitsyn, Vladimir","last_name":"Trubitsyn","first_name":"Vladimir"},{"full_name":"Ryzhmanova, Yana","first_name":"Yana","last_name":"Ryzhmanova"},{"orcid":"0000-0003-1006-6639","id":"C4558D3C-6102-11E9-A62E-F418E6697425","first_name":"Olga","last_name":"Bochkareva","full_name":"Bochkareva, Olga"},{"last_name":"Shcherbakova","first_name":"Viktoria","full_name":"Shcherbakova, Viktoria"}],"type":"conference","has_accepted_license":"1","date_published":"2020-11-02T00:00:00Z"}]