[{"publisher":"American Association for the Advancement of Science","author":[{"last_name":"Ghosh","full_name":"Ghosh, Sayak","first_name":"Sayak"},{"last_name":"Matty","first_name":"Michael","full_name":"Matty, Michael"},{"full_name":"Baumbach, Ryan","first_name":"Ryan","last_name":"Baumbach"},{"last_name":"Bauer","full_name":"Bauer, Eric D.","first_name":"Eric D."},{"full_name":"Modic, Kimberly A","first_name":"Kimberly A","id":"13C26AC0-EB69-11E9-87C6-5F3BE6697425","last_name":"Modic","orcid":"0000-0001-9760-3147"},{"full_name":"Shekhter, Arkady","first_name":"Arkady","last_name":"Shekhter"},{"last_name":"Mydosh","full_name":"Mydosh, J. A.","first_name":"J. A."},{"first_name":"Eun-Ah","full_name":"Kim, Eun-Ah","last_name":"Kim"},{"last_name":"Ramshaw","full_name":"Ramshaw, B. J.","first_name":"B. J."}],"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1903.00552"}],"quality_controlled":"1","date_updated":"2022-08-25T15:08:41Z","issue":"10","article_processing_charge":"No","title":"One-component order parameter in URu2Si2 uncovered by resonant ultrasound spectroscopy and machine learning","extern":"1","publication_status":"published","type":"journal_article","day":"06","year":"2020","volume":6,"external_id":{"arxiv":["1903.00552"],"pmid":["32181367"]},"article_type":"original","oa":1,"pmid":1,"publication":"Science Advances","date_created":"2019-11-19T14:01:10Z","month":"03","abstract":[{"text":"The unusual correlated state that emerges in URu2Si2 below THO = 17.5 K is known as “hidden order” because even basic characteristics of the order parameter, such as its dimensionality (whether it has one component or two), are “hidden.” We use resonant ultrasound spectroscopy to measure the symmetry-resolved elastic anomalies across THO. We observe no anomalies in the shear elastic moduli, providing strong thermodynamic evidence for a one-component order parameter. We develop a machine learning framework that reaches this conclusion directly from the raw data, even in a crystal that is too small for traditional resonant ultrasound. Our result rules out a broad class of theories of hidden order based on two-component order parameters, and constrains the nature of the fluctuations from which unconventional superconductivity emerges at lower temperature. Our machine learning framework is a powerful new tool for classifying the ubiquitous competing orders in correlated electron systems.","lang":"eng"}],"language":[{"iso":"eng"}],"doi":"10.1126/sciadv.aaz4074","oa_version":"Preprint","citation":{"short":"S. Ghosh, M. Matty, R. Baumbach, E.D. Bauer, K.A. Modic, A. Shekhter, J.A. Mydosh, E.-A. Kim, B.J. Ramshaw, Science Advances 6 (2020).","ista":"Ghosh S, Matty M, Baumbach R, Bauer ED, Modic KA, Shekhter A, Mydosh JA, Kim E-A, Ramshaw BJ. 2020. One-component order parameter in URu2Si2 uncovered by resonant ultrasound spectroscopy and machine learning. Science Advances. 6(10), eaaz4074.","mla":"Ghosh, Sayak, et al. “One-Component Order Parameter in URu2Si2 Uncovered by Resonant Ultrasound Spectroscopy and Machine Learning.” Science Advances, vol. 6, no. 10, eaaz4074, American Association for the Advancement of Science, 2020, doi:10.1126/sciadv.aaz4074.","ama":"Ghosh S, Matty M, Baumbach R, et al. One-component order parameter in URu2Si2 uncovered by resonant ultrasound spectroscopy and machine learning. Science Advances. 2020;6(10). doi:10.1126/sciadv.aaz4074","chicago":"Ghosh, Sayak, Michael Matty, Ryan Baumbach, Eric D. Bauer, Kimberly A Modic, Arkady Shekhter, J. A. Mydosh, Eun-Ah Kim, and B. J. Ramshaw. “One-Component Order Parameter in URu2Si2 Uncovered by Resonant Ultrasound Spectroscopy and Machine Learning.” Science Advances. American Association for the Advancement of Science, 2020. https://doi.org/10.1126/sciadv.aaz4074.","ieee":"S. Ghosh et al., “One-component order parameter in URu2Si2 uncovered by resonant ultrasound spectroscopy and machine learning,” Science Advances, vol. 6, no. 10. American Association for the Advancement of Science, 2020.","apa":"Ghosh, S., Matty, M., Baumbach, R., Bauer, E. D., Modic, K. A., Shekhter, A., … Ramshaw, B. J. (2020). One-component order parameter in URu2Si2 uncovered by resonant ultrasound spectroscopy and machine learning. Science Advances. American Association for the Advancement of Science. https://doi.org/10.1126/sciadv.aaz4074"},"_id":"7084","intvolume":" 6","arxiv":1,"article_number":"eaaz4074","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","status":"public","date_published":"2020-03-06T00:00:00Z"},{"status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_published":"2020-10-01T00:00:00Z","arxiv":1,"publication_identifier":{"issn":["0036-1410"],"eissn":["1095-7154"]},"publist_id":"7983","citation":{"ista":"Gladbach P, Kopfer E, Maas J. 2020. Scaling limits of discrete optimal transport. SIAM Journal on Mathematical Analysis. 52(3), 2759–2802.","mla":"Gladbach, Peter, et al. “Scaling Limits of Discrete Optimal Transport.” SIAM Journal on Mathematical Analysis, vol. 52, no. 3, Society for Industrial and Applied Mathematics, 2020, pp. 2759–802, doi:10.1137/19M1243440.","short":"P. Gladbach, E. Kopfer, J. Maas, SIAM Journal on Mathematical Analysis 52 (2020) 2759–2802.","ama":"Gladbach P, Kopfer E, Maas J. Scaling limits of discrete optimal transport. SIAM Journal on Mathematical Analysis. 2020;52(3):2759-2802. doi:10.1137/19M1243440","chicago":"Gladbach, Peter, Eva Kopfer, and Jan Maas. “Scaling Limits of Discrete Optimal Transport.” SIAM Journal on Mathematical Analysis. Society for Industrial and Applied Mathematics, 2020. https://doi.org/10.1137/19M1243440.","apa":"Gladbach, P., Kopfer, E., & Maas, J. (2020). Scaling limits of discrete optimal transport. SIAM Journal on Mathematical Analysis. Society for Industrial and Applied Mathematics. https://doi.org/10.1137/19M1243440","ieee":"P. Gladbach, E. Kopfer, and J. Maas, “Scaling limits of discrete optimal transport,” SIAM Journal on Mathematical Analysis, vol. 52, no. 3. Society for Industrial and Applied Mathematics, pp. 2759–2802, 2020."},"doi":"10.1137/19M1243440","oa_version":"Preprint","intvolume":" 52","_id":"71","language":[{"iso":"eng"}],"page":"2759-2802","abstract":[{"text":"We consider dynamical transport metrics for probability measures on discretisations of a bounded convex domain in ℝd. These metrics are natural discrete counterparts to the Kantorovich metric 𝕎2, defined using a Benamou-Brenier type formula. Under mild assumptions we prove an asymptotic upper bound for the discrete transport metric Wt in terms of 𝕎2, as the size of the mesh T tends to 0. However, we show that the corresponding lower bound may fail in general, even on certain one-dimensional and symmetric two-dimensional meshes. In addition, we show that the asymptotic lower bound holds under an isotropy assumption on the mesh, which turns out to be essentially necessary. This assumption is satisfied, e.g., for tilings by convex regular polygons, and it implies Gromov-Hausdorff convergence of the transport metric.","lang":"eng"}],"scopus_import":"1","oa":1,"month":"10","date_created":"2018-12-11T11:44:28Z","publication":"SIAM Journal on Mathematical Analysis","external_id":{"arxiv":["1809.01092"],"isi":["000546975100017"]},"article_type":"original","day":"01","volume":52,"year":"2020","isi":1,"type":"journal_article","publication_status":"published","issue":"3","date_updated":"2025-07-10T11:54:14Z","department":[{"_id":"JaMa"}],"title":"Scaling limits of discrete optimal transport","article_processing_charge":"No","quality_controlled":"1","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1809.01092"}],"author":[{"first_name":"Peter","full_name":"Gladbach, Peter","last_name":"Gladbach"},{"last_name":"Kopfer","first_name":"Eva","full_name":"Kopfer, Eva"},{"orcid":"0000-0002-0845-1338","last_name":"Maas","id":"4C5696CE-F248-11E8-B48F-1D18A9856A87","first_name":"Jan","full_name":"Maas, Jan"}],"publisher":"Society for Industrial and Applied Mathematics"},{"citation":{"apa":"Nakamoto, C., Konno, K., Miyazaki, T., Nakatsukasa, E., Natsume, R., Abe, M., … Watanabe, M. (2020). Expression mapping, quantification, and complex formation of GluD1 and GluD2 glutamate receptors in adult mouse brain. Journal of Comparative Neurology. Wiley. https://doi.org/10.1002/cne.24792","chicago":"Nakamoto, Chihiro, Kohtarou Konno, Taisuke Miyazaki, Ena Nakatsukasa, Rie Natsume, Manabu Abe, Meiko Kawamura, et al. “Expression Mapping, Quantification, and Complex Formation of GluD1 and GluD2 Glutamate Receptors in Adult Mouse Brain.” Journal of Comparative Neurology. Wiley, 2020. https://doi.org/10.1002/cne.24792.","ieee":"C. Nakamoto et al., “Expression mapping, quantification, and complex formation of GluD1 and GluD2 glutamate receptors in adult mouse brain,” Journal of Comparative Neurology, vol. 528, no. 6. Wiley, pp. 1003–1027, 2020.","ama":"Nakamoto C, Konno K, Miyazaki T, et al. Expression mapping, quantification, and complex formation of GluD1 and GluD2 glutamate receptors in adult mouse brain. Journal of Comparative Neurology. 2020;528(6):1003-1027. doi:10.1002/cne.24792","short":"C. Nakamoto, K. Konno, T. Miyazaki, E. Nakatsukasa, R. Natsume, M. Abe, M. Kawamura, Y. Fukazawa, R. Shigemoto, M. Yamasaki, K. Sakimura, M. Watanabe, Journal of Comparative Neurology 528 (2020) 1003–1027.","ista":"Nakamoto C, Konno K, Miyazaki T, Nakatsukasa E, Natsume R, Abe M, Kawamura M, Fukazawa Y, Shigemoto R, Yamasaki M, Sakimura K, Watanabe M. 2020. Expression mapping, quantification, and complex formation of GluD1 and GluD2 glutamate receptors in adult mouse brain. Journal of Comparative Neurology. 528(6), 1003–1027.","mla":"Nakamoto, Chihiro, et al. “Expression Mapping, Quantification, and Complex Formation of GluD1 and GluD2 Glutamate Receptors in Adult Mouse Brain.” Journal of Comparative Neurology, vol. 528, no. 6, Wiley, 2020, pp. 1003–27, doi:10.1002/cne.24792."},"doi":"10.1002/cne.24792","oa_version":"None","intvolume":" 528","_id":"7148","language":[{"iso":"eng"}],"page":"1003-1027","scopus_import":"1","abstract":[{"lang":"eng","text":"In the cerebellum, GluD2 is exclusively expressed in Purkinje cells, where it regulates synapse formation and regeneration, synaptic plasticity, and motor learning. Delayed cognitive development in humans with GluD2 gene mutations suggests extracerebellar functions of GluD2. However, extracerebellar expression of GluD2 and its relationship with that of GluD1 are poorly understood. GluD2 mRNA and protein were widely detected, with relatively high levels observed in the olfactory glomerular layer, medial prefrontal cortex, cingulate cortex, retrosplenial granular cortex, olfactory tubercle, subiculum, striatum, lateral septum, anterodorsal thalamic nucleus, and arcuate hypothalamic nucleus. These regions were also enriched for GluD1, and many individual neurons coexpressed the two GluDs. In the retrosplenial granular cortex, GluD1 and GluD2 were selectively expressed at PSD‐95‐expressing glutamatergic synapses, and their coexpression on the same synapses was shown by SDS‐digested freeze‐fracture replica labeling. Biochemically, GluD1 and GluD2 formed coimmunoprecipitable complex formation in HEK293T cells and in the cerebral cortex and hippocampus. We further estimated the relative protein amount by quantitative immunoblotting using GluA2/GluD2 and GluA2/GluD1 chimeric proteins as standards for titration of GluD1 and GluD2 antibodies. Intriguingly, the relative amount of GluD2 was almost comparable to that of GluD1 in the postsynaptic density fraction prepared from the cerebral cortex and hippocampus. In contrast, GluD2 was overwhelmingly predominant in the cerebellum. Thus, we have determined the relative extracerebellar expression of GluD1 and GluD2 at regional, neuronal, and synaptic levels. These data provide a molecular–anatomical basis for possible competitive and cooperative interactions of GluD family members at synapses in various brain regions."}],"date_created":"2019-12-04T16:09:29Z","month":"04","publication":"Journal of Comparative Neurology","pmid":1,"status":"public","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","date_published":"2020-04-01T00:00:00Z","publication_identifier":{"eissn":["1096-9861"],"issn":["0021-9967"]},"type":"journal_article","publication_status":"published","has_accepted_license":"1","issue":"6","date_updated":"2023-08-17T14:06:50Z","title":"Expression mapping, quantification, and complex formation of GluD1 and GluD2 glutamate receptors in adult mouse brain","department":[{"_id":"RySh"}],"article_processing_charge":"No","quality_controlled":"1","author":[{"last_name":"Nakamoto","full_name":"Nakamoto, Chihiro","first_name":"Chihiro"},{"last_name":"Konno","full_name":"Konno, Kohtarou","first_name":"Kohtarou"},{"last_name":"Miyazaki","first_name":"Taisuke","full_name":"Miyazaki, Taisuke"},{"full_name":"Nakatsukasa, Ena","first_name":"Ena","last_name":"Nakatsukasa"},{"last_name":"Natsume","full_name":"Natsume, Rie","first_name":"Rie"},{"full_name":"Abe, Manabu","first_name":"Manabu","last_name":"Abe"},{"last_name":"Kawamura","full_name":"Kawamura, Meiko","first_name":"Meiko"},{"first_name":"Yugo","full_name":"Fukazawa, Yugo","last_name":"Fukazawa"},{"first_name":"Ryuichi","full_name":"Shigemoto, Ryuichi","last_name":"Shigemoto","orcid":"0000-0001-8761-9444","id":"499F3ABC-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Yamasaki","full_name":"Yamasaki, Miwako","first_name":"Miwako"},{"first_name":"Kenji","full_name":"Sakimura, Kenji","last_name":"Sakimura"},{"last_name":"Watanabe","full_name":"Watanabe, Masahiko","first_name":"Masahiko"}],"ddc":["571","599"],"publisher":"Wiley","external_id":{"isi":["000496410200001"],"pmid":["31625608"]},"article_type":"original","day":"01","volume":528,"year":"2020","acknowledgement":"This study was supported by Grants-in-Aid for Scientific Research to K.K. (18K06813), Y.M. (17K08503, 17H0631319), and K.S. (16H04650) and a grant for Scientific Research on Innovative Areas to K.S (16H06276) from the Ministry of Education, Culture, Sports, Science and Technology of Japan (MEXT). We thank K. Akashi, I. Watanabe-Iida, Y. Suzuki, and H. Azechi for technical assistance and advice, and H. Uchida for valuable discussions. We thank E. Kushiya,I. Yabe, C. Ohori, Y. Mochizuki, Y. Ishikawa, and N. Ishimoto for technical assistance in generating GluD1-KO mice.","isi":1},{"publication_identifier":{"issn":["0009-9163"],"eissn":["1399-0004"]},"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","status":"public","date_published":"2020-01-01T00:00:00Z","pmid":1,"date_created":"2019-12-04T16:10:59Z","publication":"Clinical Genetics","month":"01","abstract":[{"text":"In recent years, many genes have been associated with chromatinopathies classified as “Cornelia de Lange Syndrome‐like.” It is known that the phenotype of these patients becomes less recognizable, overlapping to features characteristic of other syndromes caused by genetic variants affecting different regulators of chromatin structure and function. Therefore, Cornelia de Lange syndrome diagnosis might be arduous due to the seldom discordance between unexpected molecular diagnosis and clinical evaluation. Here, we review the molecular features of Cornelia de Lange syndrome, supporting the hypothesis that “CdLS‐like syndromes” are part of a larger “rare disease family” sharing multiple clinical features and common disrupted molecular pathways.","lang":"eng"}],"scopus_import":"1","language":[{"iso":"eng"}],"page":"3-11","oa_version":"None","doi":"10.1111/cge.13674","citation":{"ama":"Avagliano L, Parenti I, Grazioli P, et al. Chromatinopathies: A focus on Cornelia de Lange syndrome. Clinical Genetics. 2020;97(1):3-11. doi:10.1111/cge.13674","ieee":"L. Avagliano et al., “Chromatinopathies: A focus on Cornelia de Lange syndrome,” Clinical Genetics, vol. 97, no. 1. Wiley, pp. 3–11, 2020.","apa":"Avagliano, L., Parenti, I., Grazioli, P., Di Fede, E., Parodi, C., Mariani, M., … Massa, V. (2020). Chromatinopathies: A focus on Cornelia de Lange syndrome. Clinical Genetics. Wiley. https://doi.org/10.1111/cge.13674","chicago":"Avagliano, Laura, Ilaria Parenti, Paolo Grazioli, Elisabetta Di Fede, Chiara Parodi, Milena Mariani, Frank J. Kaiser, Angelo Selicorni, Cristina Gervasini, and Valentina Massa. “Chromatinopathies: A Focus on Cornelia de Lange Syndrome.” Clinical Genetics. Wiley, 2020. https://doi.org/10.1111/cge.13674.","short":"L. Avagliano, I. Parenti, P. Grazioli, E. Di Fede, C. Parodi, M. Mariani, F.J. Kaiser, A. Selicorni, C. Gervasini, V. Massa, Clinical Genetics 97 (2020) 3–11.","ista":"Avagliano L, Parenti I, Grazioli P, Di Fede E, Parodi C, Mariani M, Kaiser FJ, Selicorni A, Gervasini C, Massa V. 2020. Chromatinopathies: A focus on Cornelia de Lange syndrome. Clinical Genetics. 97(1), 3–11.","mla":"Avagliano, Laura, et al. “Chromatinopathies: A Focus on Cornelia de Lange Syndrome.” Clinical Genetics, vol. 97, no. 1, Wiley, 2020, pp. 3–11, doi:10.1111/cge.13674."},"_id":"7149","intvolume":" 97","acknowledgement":" Dipartimento DiSS, Università degli Studi di Milano, Grant/Award Number: Linea 2; Fondazione Cariplo, Grant/Award Number: 2015-0783; German Federal Ministry of Education and Research (BMBF), Grant/Award Number: CHROMATIN-Net; Medical Faculty of the University of Lübeck, Grant/Award Number: J09-2017; Nickel & Co S.p.A.; Università degli Studi di Milano, Grant/Award Numbers: Molecular & Translational Medicine PhD Scholarship, Translational Medicine PhD Scholarship","isi":1,"day":"01","year":"2020","volume":97,"external_id":{"pmid":["31721174"],"isi":["000562561800001"]},"article_type":"review","publisher":"Wiley","author":[{"full_name":"Avagliano, Laura","first_name":"Laura","last_name":"Avagliano"},{"first_name":"Ilaria","full_name":"Parenti, Ilaria","last_name":"Parenti","id":"D93538B0-5B71-11E9-AC62-02EBE5697425"},{"last_name":"Grazioli","first_name":"Paolo","full_name":"Grazioli, Paolo"},{"last_name":"Di Fede","full_name":"Di Fede, Elisabetta","first_name":"Elisabetta"},{"full_name":"Parodi, Chiara","first_name":"Chiara","last_name":"Parodi"},{"first_name":"Milena","full_name":"Mariani, Milena","last_name":"Mariani"},{"last_name":"Kaiser","full_name":"Kaiser, Frank J.","first_name":"Frank J."},{"last_name":"Selicorni","first_name":"Angelo","full_name":"Selicorni, Angelo"},{"last_name":"Gervasini","first_name":"Cristina","full_name":"Gervasini, Cristina"},{"full_name":"Massa, Valentina","first_name":"Valentina","last_name":"Massa"}],"quality_controlled":"1","date_updated":"2023-08-17T14:06:20Z","issue":"1","article_processing_charge":"No","department":[{"_id":"GaNo"}],"title":"Chromatinopathies: A focus on Cornelia de Lange syndrome","publication_status":"published","type":"journal_article"},{"status":"public","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","date_published":"2020-01-01T00:00:00Z","publication_identifier":{"eissn":["1421-9743"],"issn":["0006-8977"]},"language":[{"iso":"eng"}],"page":"27-36","citation":{"ama":"Salazar JE, Severin D, Vega Zuniga TA, et al. Anatomical specializations related to foraging in the visual system of a nocturnal insectivorous bird, the band-winged nightjar (Aves: Caprimulgiformes). Brain, Behavior and Evolution. 2020;94(1-4):27-36. doi:10.1159/000504162","chicago":"Salazar, Juan Esteban, Daniel Severin, Tomas A Vega Zuniga, Pedro Fernández-Aburto, Alfonso Deichler, Michel Sallaberry A., and Jorge Mpodozis. “Anatomical Specializations Related to Foraging in the Visual System of a Nocturnal Insectivorous Bird, the Band-Winged Nightjar (Aves: Caprimulgiformes).” Brain, Behavior and Evolution. Karger Publishers, 2020. https://doi.org/10.1159/000504162.","ieee":"J. E. Salazar et al., “Anatomical specializations related to foraging in the visual system of a nocturnal insectivorous bird, the band-winged nightjar (Aves: Caprimulgiformes),” Brain, Behavior and Evolution, vol. 94, no. 1–4. Karger Publishers, pp. 27–36, 2020.","apa":"Salazar, J. E., Severin, D., Vega Zuniga, T. A., Fernández-Aburto, P., Deichler, A., Sallaberry A., M., & Mpodozis, J. (2020). Anatomical specializations related to foraging in the visual system of a nocturnal insectivorous bird, the band-winged nightjar (Aves: Caprimulgiformes). Brain, Behavior and Evolution. Karger Publishers. https://doi.org/10.1159/000504162","short":"J.E. Salazar, D. Severin, T.A. Vega Zuniga, P. Fernández-Aburto, A. Deichler, M. Sallaberry A., J. Mpodozis, Brain, Behavior and Evolution 94 (2020) 27–36.","ista":"Salazar JE, Severin D, Vega Zuniga TA, Fernández-Aburto P, Deichler A, Sallaberry A. M, Mpodozis J. 2020. Anatomical specializations related to foraging in the visual system of a nocturnal insectivorous bird, the band-winged nightjar (Aves: Caprimulgiformes). Brain, Behavior and Evolution. 94(1–4), 27–36.","mla":"Salazar, Juan Esteban, et al. “Anatomical Specializations Related to Foraging in the Visual System of a Nocturnal Insectivorous Bird, the Band-Winged Nightjar (Aves: Caprimulgiformes).” Brain, Behavior and Evolution, vol. 94, no. 1–4, Karger Publishers, 2020, pp. 27–36, doi:10.1159/000504162."},"oa_version":"None","doi":"10.1159/000504162","intvolume":" 94","_id":"7160","date_created":"2019-12-09T09:04:13Z","publication":"Brain, Behavior and Evolution","month":"01","pmid":1,"scopus_import":"1","abstract":[{"text":"Nocturnal animals that rely on their visual system for foraging, mating, and navigation usually exhibit specific traits associated with living in scotopic conditions. Most nocturnal birds have several visual specializations, such as enlarged eyes and an increased orbital convergence. However, the actual role of binocular vision in nocturnal foraging is still debated. Nightjars (Aves: Caprimulgidae) are predators that actively pursue and capture flying insects in crepuscular and nocturnal environments, mainly using a conspicuous “sit-and-wait” tactic on which pursuit begins with an insect flying over the bird that sits on the ground. In this study, we describe the visual system of the band-winged nightjar (Systellura longirostris), with emphasis on anatomical features previously described as relevant for nocturnal birds. Orbit convergence, determined by 3D scanning of the skull, was 73.28°. The visual field, determined by ophthalmoscopic reflex, exhibits an area of maximum binocular overlap of 42°, and it is dorsally oriented. The eyes showed a nocturnal-like normalized corneal aperture/axial length index. Retinal ganglion cells (RGCs) were relatively scant, and distributed in an unusual oblique-band pattern, with higher concentrations in the ventrotemporal quadrant. Together, these results indicate that the band-winged nightjar exhibits a retinal specialization associated with the binocular area of their dorsal visual field, a relevant area for pursuit triggering and prey attacks. The RGC distribution observed is unusual among birds, but similar to that of some visually dependent insectivorous bats, suggesting that those features might be convergent in relation to feeding strategies.","lang":"eng"}],"external_id":{"isi":["000522856600004"],"pmid":["31751995"]},"article_type":"original","isi":1,"day":"01","volume":94,"year":"2020","issue":"1-4","date_updated":"2024-02-22T15:18:34Z","department":[{"_id":"MaJö"}],"title":"Anatomical specializations related to foraging in the visual system of a nocturnal insectivorous bird, the band-winged nightjar (Aves: Caprimulgiformes)","article_processing_charge":"No","type":"journal_article","publication_status":"published","publisher":"Karger Publishers","quality_controlled":"1","author":[{"first_name":"Juan Esteban","full_name":"Salazar, Juan Esteban","last_name":"Salazar"},{"full_name":"Severin, Daniel","first_name":"Daniel","last_name":"Severin"},{"last_name":"Vega Zuniga","id":"2E7C4E78-F248-11E8-B48F-1D18A9856A87","first_name":"Tomas A","full_name":"Vega Zuniga, Tomas A"},{"last_name":"Fernández-Aburto","full_name":"Fernández-Aburto, Pedro","first_name":"Pedro"},{"last_name":"Deichler","first_name":"Alfonso","full_name":"Deichler, Alfonso"},{"full_name":"Sallaberry A., Michel","first_name":"Michel","last_name":"Sallaberry A."},{"last_name":"Mpodozis","first_name":"Jorge","full_name":"Mpodozis, Jorge"}]},{"publication_status":"published","type":"journal_article","article_processing_charge":"No","title":"Collective force generation by molecular motors is determined by strain-induced unbinding","department":[{"_id":"EdHa"}],"date_updated":"2024-10-09T20:59:07Z","issue":"1","author":[{"full_name":"Ucar, Mehmet C","first_name":"Mehmet C","id":"50B2A802-6007-11E9-A42B-EB23E6697425","last_name":"Ucar","orcid":"0000-0003-0506-4217"},{"last_name":"Lipowsky","full_name":"Lipowsky, Reinhard","first_name":"Reinhard"}],"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1021/acs.nanolett.9b04445"}],"quality_controlled":"1","publisher":"American Chemical Society","article_type":"letter_note","external_id":{"isi":["000507151600087"],"pmid":["31797672"]},"year":"2020","volume":20,"day":"08","isi":1,"corr_author":"1","_id":"7166","intvolume":" 20","doi":"10.1021/acs.nanolett.9b04445","oa_version":"Published Version","citation":{"short":"M.C. Ucar, R. Lipowsky, Nano Letters 20 (2020) 669–676.","mla":"Ucar, Mehmet C., and Reinhard Lipowsky. “Collective Force Generation by Molecular Motors Is Determined by Strain-Induced Unbinding.” Nano Letters, vol. 20, no. 1, American Chemical Society, 2020, pp. 669–76, doi:10.1021/acs.nanolett.9b04445.","ista":"Ucar MC, Lipowsky R. 2020. Collective force generation by molecular motors is determined by strain-induced unbinding. Nano Letters. 20(1), 669–676.","ieee":"M. C. Ucar and R. Lipowsky, “Collective force generation by molecular motors is determined by strain-induced unbinding,” Nano Letters, vol. 20, no. 1. American Chemical Society, pp. 669–676, 2020.","chicago":"Ucar, Mehmet C, and Reinhard Lipowsky. “Collective Force Generation by Molecular Motors Is Determined by Strain-Induced Unbinding.” Nano Letters. American Chemical Society, 2020. https://doi.org/10.1021/acs.nanolett.9b04445.","apa":"Ucar, M. C., & Lipowsky, R. (2020). Collective force generation by molecular motors is determined by strain-induced unbinding. Nano Letters. American Chemical Society. https://doi.org/10.1021/acs.nanolett.9b04445","ama":"Ucar MC, Lipowsky R. Collective force generation by molecular motors is determined by strain-induced unbinding. Nano Letters. 2020;20(1):669-676. doi:10.1021/acs.nanolett.9b04445"},"page":"669-676","language":[{"iso":"eng"}],"scopus_import":"1","abstract":[{"text":"In the living cell, we encounter a large variety of motile processes such as organelle transport and cytoskeleton remodeling. These processes are driven by motor proteins that generate force by transducing chemical free energy into mechanical work. In many cases, the molecular motors work in teams to collectively generate larger forces. Recent optical trapping experiments on small teams of cytoskeletal motors indicated that the collectively generated force increases with the size of the motor team but that this increase depends on the motor type and on whether the motors are studied in vitro or in vivo. Here, we use the theory of stochastic processes to describe the motion of N motors in a stationary optical trap and to compute the N-dependence of the collectively generated forces. We consider six distinct motor types, two kinesins, two dyneins, and two myosins. We show that the force increases always linearly with N but with a prefactor that depends on the performance of the single motor. Surprisingly, this prefactor increases for weaker motors with a lower stall force. This counter-intuitive behavior reflects the increased probability with which stronger motors detach from the filament during strain generation. Our theoretical results are in quantitative agreement with experimental data on small teams of kinesin-1 motors.","lang":"eng"}],"pmid":1,"month":"01","publication":"Nano Letters","date_created":"2019-12-10T15:36:05Z","oa":1,"date_published":"2020-01-08T00:00:00Z","related_material":{"record":[{"status":"public","relation":"research_data","id":"9726"},{"id":"9885","relation":"research_data","status":"public"}]},"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","status":"public","publication_identifier":{"issn":["1530-6984"],"eissn":["1530-6992"]}},{"publication":"Advanced Science","date_created":"2019-12-22T23:00:43Z","month":"02","pmid":1,"oa":1,"scopus_import":"1","abstract":[{"lang":"eng","text":"Plant root architecture dynamically adapts to various environmental conditions, such as salt‐containing soil. The phytohormone abscisic acid (ABA) is involved among others also in these developmental adaptations, but the underlying molecular mechanism remains elusive. Here, a novel branch of the ABA signaling pathway in Arabidopsis involving PYR/PYL/RCAR (abbreviated as PYLs) receptor‐protein phosphatase 2A (PP2A) complex that acts in parallel to the canonical PYLs‐protein phosphatase 2C (PP2C) mechanism is identified. The PYLs‐PP2A signaling modulates root gravitropism and lateral root formation through regulating phytohormone auxin transport. In optimal conditions, PYLs ABA receptor interacts with the catalytic subunits of PP2A, increasing their phosphatase activity and thus counteracting PINOID (PID) kinase‐mediated phosphorylation of PIN‐FORMED (PIN) auxin transporters. By contrast, in salt and osmotic stress conditions, ABA binds to PYLs, inhibiting the PP2A activity, which leads to increased PIN phosphorylation and consequently modulated directional auxin transport leading to adapted root architecture. This work reveals an adaptive mechanism that may flexibly adjust plant root growth to withstand saline and osmotic stresses. It occurs via the cross‐talk between the stress hormone ABA and the versatile developmental regulator auxin."}],"language":[{"iso":"eng"}],"intvolume":" 7","_id":"7204","citation":{"short":"Y. Li, Y. Wang, S. Tan, Z. Li, Z. Yuan, M. Glanc, D. Domjan, K. Wang, W. Xuan, Y. Guo, Z. Gong, J. Friml, J. Zhang, Advanced Science 7 (2020).","mla":"Li, Yang, et al. “Root Growth Adaptation Is Mediated by PYLs ABA Receptor-PP2A Protein Phosphatase Complex.” Advanced Science, vol. 7, no. 3, 1901455, Wiley, 2020, doi:10.1002/advs.201901455.","ista":"Li Y, Wang Y, Tan S, Li Z, Yuan Z, Glanc M, Domjan D, Wang K, Xuan W, Guo Y, Gong Z, Friml J, Zhang J. 2020. Root growth adaptation is mediated by PYLs ABA receptor-PP2A protein phosphatase complex. Advanced Science. 7(3), 1901455.","chicago":"Li, Yang, Yaping Wang, Shutang Tan, Zhen Li, Zhi Yuan, Matous Glanc, David Domjan, et al. “Root Growth Adaptation Is Mediated by PYLs ABA Receptor-PP2A Protein Phosphatase Complex.” Advanced Science. Wiley, 2020. https://doi.org/10.1002/advs.201901455.","apa":"Li, Y., Wang, Y., Tan, S., Li, Z., Yuan, Z., Glanc, M., … Zhang, J. (2020). Root growth adaptation is mediated by PYLs ABA receptor-PP2A protein phosphatase complex. Advanced Science. Wiley. https://doi.org/10.1002/advs.201901455","ieee":"Y. Li et al., “Root growth adaptation is mediated by PYLs ABA receptor-PP2A protein phosphatase complex,” Advanced Science, vol. 7, no. 3. Wiley, 2020.","ama":"Li Y, Wang Y, Tan S, et al. Root growth adaptation is mediated by PYLs ABA receptor-PP2A protein phosphatase complex. Advanced Science. 2020;7(3). doi:10.1002/advs.201901455"},"doi":"10.1002/advs.201901455","oa_version":"Published Version","publication_identifier":{"eissn":["2198-3844"]},"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"article_number":"1901455","date_published":"2020-02-05T00:00:00Z","status":"public","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","publisher":"Wiley","ddc":["580"],"quality_controlled":"1","author":[{"full_name":"Li, Yang","first_name":"Yang","last_name":"Li"},{"first_name":"Yaping","full_name":"Wang, Yaping","last_name":"Wang"},{"id":"2DE75584-F248-11E8-B48F-1D18A9856A87","last_name":"Tan","orcid":"0000-0002-0471-8285","full_name":"Tan, Shutang","first_name":"Shutang"},{"full_name":"Li, Zhen","first_name":"Zhen","last_name":"Li"},{"first_name":"Zhi","full_name":"Yuan, Zhi","last_name":"Yuan"},{"last_name":"Glanc","orcid":"0000-0003-0619-7783","id":"1AE1EA24-02D0-11E9-9BAA-DAF4881429F2","first_name":"Matous","full_name":"Glanc, Matous"},{"id":"C684CD7A-257E-11EA-9B6F-D8588B4F947F","last_name":"Domjan","orcid":"0000-0003-2267-106X","full_name":"Domjan, David","first_name":"David"},{"full_name":"Wang, Kai","first_name":"Kai","last_name":"Wang"},{"full_name":"Xuan, Wei","first_name":"Wei","last_name":"Xuan"},{"first_name":"Yan","full_name":"Guo, Yan","last_name":"Guo"},{"last_name":"Gong","first_name":"Zhizhong","full_name":"Gong, Zhizhong"},{"id":"4159519E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8302-7596","last_name":"Friml","full_name":"Friml, Jiří","first_name":"Jiří"},{"last_name":"Zhang","first_name":"Jing","full_name":"Zhang, Jing"}],"title":"Root growth adaptation is mediated by PYLs ABA receptor-PP2A protein phosphatase complex","department":[{"_id":"JiFr"}],"article_processing_charge":"No","issue":"3","has_accepted_license":"1","date_updated":"2023-08-17T14:13:17Z","type":"journal_article","publication_status":"published","file":[{"relation":"main_file","content_type":"application/pdf","creator":"dernst","file_name":"2020_AdvScience_Li.pdf","file_size":3586924,"date_created":"2020-02-24T14:29:54Z","file_id":"7519","access_level":"open_access","checksum":"016eeab5860860af038e2da95ffe75c3","date_updated":"2020-07-14T12:47:53Z"}],"isi":1,"volume":7,"year":"2020","day":"05","article_type":"original","license":"https://creativecommons.org/licenses/by/4.0/","external_id":{"pmid":["32042554"],"isi":["000501912800001"]},"file_date_updated":"2020-07-14T12:47:53Z"},{"file_date_updated":"2020-09-22T09:42:18Z","article_type":"original","external_id":{"isi":["000500954800001"],"pmid":["31724256"]},"volume":33,"year":"2020","day":"01","isi":1,"type":"journal_article","publication_status":"published","file":[{"date_created":"2020-09-22T09:42:18Z","file_id":"8553","file_size":885611,"success":1,"content_type":"application/pdf","creator":"dernst","file_name":"2020_EvolBiology_Johannesson.pdf","relation":"main_file","date_updated":"2020-09-22T09:42:18Z","checksum":"7534ff0839709c0c5265c12d29432f03","access_level":"open_access"}],"department":[{"_id":"NiBa"}],"title":"Is embryo abortion a post-zygotic barrier to gene flow between Littorina ecotypes?","article_processing_charge":"No","has_accepted_license":"1","issue":"3","date_updated":"2025-07-10T11:54:22Z","quality_controlled":"1","author":[{"full_name":"Johannesson, Kerstin","first_name":"Kerstin","last_name":"Johannesson"},{"first_name":"Zuzanna","full_name":"Zagrodzka, Zuzanna","last_name":"Zagrodzka"},{"full_name":"Faria, Rui","first_name":"Rui","last_name":"Faria"},{"first_name":"Anja M","full_name":"Westram, Anja M","last_name":"Westram","orcid":"0000-0003-1050-4969","id":"3C147470-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Butlin, Roger K.","first_name":"Roger K.","last_name":"Butlin"}],"publisher":"Wiley","ddc":["570"],"related_material":{"record":[{"status":"public","relation":"research_data","id":"13067"}]},"date_published":"2020-03-01T00:00:00Z","status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_identifier":{"eissn":["1420-9101"],"issn":["1010-061X"]},"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"intvolume":" 33","_id":"7205","citation":{"short":"K. Johannesson, Z. Zagrodzka, R. Faria, A.M. Westram, R.K. Butlin, Journal of Evolutionary Biology 33 (2020) 342–351.","mla":"Johannesson, Kerstin, et al. “Is Embryo Abortion a Post-Zygotic Barrier to Gene Flow between Littorina Ecotypes?” Journal of Evolutionary Biology, vol. 33, no. 3, Wiley, 2020, pp. 342–51, doi:10.1111/jeb.13570.","ista":"Johannesson K, Zagrodzka Z, Faria R, Westram AM, Butlin RK. 2020. Is embryo abortion a post-zygotic barrier to gene flow between Littorina ecotypes? Journal of Evolutionary Biology. 33(3), 342–351.","apa":"Johannesson, K., Zagrodzka, Z., Faria, R., Westram, A. M., & Butlin, R. K. (2020). Is embryo abortion a post-zygotic barrier to gene flow between Littorina ecotypes? Journal of Evolutionary Biology. Wiley. https://doi.org/10.1111/jeb.13570","ieee":"K. Johannesson, Z. Zagrodzka, R. Faria, A. M. Westram, and R. K. Butlin, “Is embryo abortion a post-zygotic barrier to gene flow between Littorina ecotypes?,” Journal of Evolutionary Biology, vol. 33, no. 3. Wiley, pp. 342–351, 2020.","chicago":"Johannesson, Kerstin, Zuzanna Zagrodzka, Rui Faria, Anja M Westram, and Roger K. Butlin. “Is Embryo Abortion a Post-Zygotic Barrier to Gene Flow between Littorina Ecotypes?” Journal of Evolutionary Biology. Wiley, 2020. https://doi.org/10.1111/jeb.13570.","ama":"Johannesson K, Zagrodzka Z, Faria R, Westram AM, Butlin RK. Is embryo abortion a post-zygotic barrier to gene flow between Littorina ecotypes? Journal of Evolutionary Biology. 2020;33(3):342-351. doi:10.1111/jeb.13570"},"doi":"10.1111/jeb.13570","oa_version":"Published Version","page":"342-351","language":[{"iso":"eng"}],"abstract":[{"text":"Genetic incompatibilities contribute to reproductive isolation between many diverging populations, but it is still unclear to what extent they play a role if divergence happens with gene flow. In contact zones between the \"Crab\" and \"Wave\" ecotypes of the snail Littorina saxatilis, divergent selection forms strong barriers to gene flow, while the role of post‐zygotic barriers due to selection against hybrids remains unclear. High embryo abortion rates in this species could indicate the presence of such barriers. Post‐zygotic barriers might include genetic incompatibilities (e.g. Dobzhansky–Muller incompatibilities) but also maladaptation, both expected to be most pronounced in contact zones. In addition, embryo abortion might reflect physiological stress on females and embryos independent of any genetic stress. We examined all embryos of >500 females sampled outside and inside contact zones of three populations in Sweden. Females' clutch size ranged from 0 to 1,011 embryos (mean 130 ± 123), and abortion rates varied between 0% and 100% (mean 12%). We described female genotypes by using a hybrid index based on hundreds of SNPs differentiated between ecotypes with which we characterized female genotypes. We also calculated female SNP heterozygosity and inversion karyotype. Clutch size did not vary with female hybrid index, and abortion rates were only weakly related to hybrid index in two sites but not at all in a third site. No additional variation in abortion rate was explained by female SNP heterozygosity, but increased female inversion heterozygosity added slightly to increased abortion. Our results show only weak and probably biologically insignificant post‐zygotic barriers contributing to ecotype divergence, and the high and variable abortion rates were marginally, if at all, explained by hybrid index of females.","lang":"eng"}],"scopus_import":"1","month":"03","date_created":"2019-12-22T23:00:43Z","publication":"Journal of Evolutionary Biology","pmid":1,"oa":1},{"language":[{"iso":"eng"}],"page":"554-575","oa_version":"Published Version","doi":"10.1111/bpa.12802","citation":{"short":"A. Martín-Belmonte, C. Aguado, R. Alfaro-Ruíz, A.E. Moreno-Martínez, L. De La Ossa, J. Martínez-Hernández, A. Buisson, S. Früh, B. Bettler, R. Shigemoto, Y. Fukazawa, R. Luján, Brain Pathology 30 (2020) 554–575.","mla":"Martín-Belmonte, Alejandro, et al. “Reduction in the Neuronal Surface of Post and Presynaptic GABA>B< Receptors in the Hippocampus in a Mouse Model of Alzheimer’s Disease.” Brain Pathology, vol. 30, no. 3, Wiley, 2020, pp. 554–75, doi:10.1111/bpa.12802.","ista":"Martín-Belmonte A, Aguado C, Alfaro-Ruíz R, Moreno-Martínez AE, De La Ossa L, Martínez-Hernández J, Buisson A, Früh S, Bettler B, Shigemoto R, Fukazawa Y, Luján R. 2020. Reduction in the neuronal surface of post and presynaptic GABA>B< receptors in the hippocampus in a mouse model of Alzheimer’s disease. Brain Pathology. 30(3), 554–575.","ama":"Martín-Belmonte A, Aguado C, Alfaro-Ruíz R, et al. Reduction in the neuronal surface of post and presynaptic GABA>B< receptors in the hippocampus in a mouse model of Alzheimer’s disease. Brain Pathology. 2020;30(3):554-575. doi:10.1111/bpa.12802","chicago":"Martín-Belmonte, Alejandro, Carolina Aguado, Rocío Alfaro-Ruíz, Ana Esther Moreno-Martínez, Luis De La Ossa, José Martínez-Hernández, Alain Buisson, et al. “Reduction in the Neuronal Surface of Post and Presynaptic GABA>B< Receptors in the Hippocampus in a Mouse Model of Alzheimer’s Disease.” Brain Pathology. Wiley, 2020. https://doi.org/10.1111/bpa.12802.","ieee":"A. Martín-Belmonte et al., “Reduction in the neuronal surface of post and presynaptic GABA>B< receptors in the hippocampus in a mouse model of Alzheimer’s disease,” Brain Pathology, vol. 30, no. 3. Wiley, pp. 554–575, 2020.","apa":"Martín-Belmonte, A., Aguado, C., Alfaro-Ruíz, R., Moreno-Martínez, A. E., De La Ossa, L., Martínez-Hernández, J., … Luján, R. (2020). Reduction in the neuronal surface of post and presynaptic GABA>B< receptors in the hippocampus in a mouse model of Alzheimer’s disease. Brain Pathology. Wiley. https://doi.org/10.1111/bpa.12802"},"_id":"7207","intvolume":" 30","oa":1,"pmid":1,"publication":"Brain Pathology","month":"05","date_created":"2019-12-22T23:00:43Z","scopus_import":"1","ec_funded":1,"abstract":[{"lang":"eng","text":"The hippocampus plays key roles in learning and memory and is a main target of Alzheimer's disease (AD), which causes progressive memory impairments. Despite numerous investigations about the processes required for the normal hippocampal functions, the neurotransmitter receptors involved in the synaptic deficits by which AD disables the hippocampus are not yet characterized. By combining histoblots, western blots, immunohistochemistry and high‐resolution immunoelectron microscopic methods for GABAB receptors, this study provides a quantitative description of the expression and the subcellular localization of GABAB1 in the hippocampus in a mouse model of AD at 1, 6 and 12 months of age. Western blots and histoblots showed that the total amount of protein and the laminar expression pattern of GABAB1 were similar in APP/PS1 mice and in age‐matched wild‐type mice. In contrast, immunoelectron microscopic techniques showed that the subcellular localization of GABAB1 subunit did not change significantly in APP/PS1 mice at 1 month of age, was significantly reduced in the stratum lacunosum‐moleculare of CA1 pyramidal cells at 6 months of age and significantly reduced at the membrane surface of CA1 pyramidal cells at 12 months of age. This reduction of plasma membrane GABAB1 was paralleled by a significant increase of the subunit at the intracellular sites. We further observed a decrease of membrane‐targeted GABAB receptors in axon terminals contacting CA1 pyramidal cells. Our data demonstrate compartment‐ and age‐dependent reduction of plasma membrane‐targeted GABAB receptors in the CA1 region of the hippocampus, suggesting that this decrease might be enough to alter the GABAB‐mediated synaptic transmission taking place in AD."}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","date_published":"2020-05-01T00:00:00Z","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"publication_identifier":{"eissn":["1750-3639"],"issn":["1015-6305"]},"date_updated":"2025-07-10T11:54:22Z","has_accepted_license":"1","issue":"3","article_processing_charge":"No","title":"Reduction in the neuronal surface of post and presynaptic GABA>B< receptors in the hippocampus in a mouse model of Alzheimer's disease","department":[{"_id":"RySh"}],"file":[{"relation":"main_file","file_name":"2020_BrainPathology_MartinBelmonte.pdf","creator":"dernst","content_type":"application/pdf","success":1,"file_size":4220935,"file_id":"8554","date_created":"2020-09-22T09:47:19Z","access_level":"open_access","checksum":"549cc1b18f638a21d17a939ba5563fa9","date_updated":"2020-09-22T09:47:19Z"}],"publication_status":"published","type":"journal_article","publisher":"Wiley","ddc":["570"],"author":[{"last_name":"Martín-Belmonte","full_name":"Martín-Belmonte, Alejandro","first_name":"Alejandro"},{"last_name":"Aguado","full_name":"Aguado, Carolina","first_name":"Carolina"},{"last_name":"Alfaro-Ruíz","first_name":"Rocío","full_name":"Alfaro-Ruíz, Rocío"},{"full_name":"Moreno-Martínez, Ana Esther","first_name":"Ana Esther","last_name":"Moreno-Martínez"},{"first_name":"Luis","full_name":"De La Ossa, Luis","last_name":"De La Ossa"},{"first_name":"José","full_name":"Martínez-Hernández, José","last_name":"Martínez-Hernández"},{"full_name":"Buisson, Alain","first_name":"Alain","last_name":"Buisson"},{"last_name":"Früh","full_name":"Früh, Simon","first_name":"Simon"},{"full_name":"Bettler, Bernhard","first_name":"Bernhard","last_name":"Bettler"},{"id":"499F3ABC-F248-11E8-B48F-1D18A9856A87","last_name":"Shigemoto","orcid":"0000-0001-8761-9444","full_name":"Shigemoto, Ryuichi","first_name":"Ryuichi"},{"last_name":"Fukazawa","full_name":"Fukazawa, Yugo","first_name":"Yugo"},{"last_name":"Luján","full_name":"Luján, Rafael","first_name":"Rafael"}],"quality_controlled":"1","external_id":{"pmid":["31729777"],"isi":["000502270900001"]},"project":[{"_id":"25CBA828-B435-11E9-9278-68D0E5697425","name":"Human Brain Project Specific Grant Agreement 1","call_identifier":"H2020","grant_number":"720270"},{"call_identifier":"H2020","grant_number":"785907","name":"Human Brain Project Specific Grant Agreement 2","_id":"26436750-B435-11E9-9278-68D0E5697425"}],"article_type":"original","file_date_updated":"2020-09-22T09:47:19Z","isi":1,"day":"01","year":"2020","volume":30},{"file":[{"relation":"main_file","file_name":"main.pdf","creator":"bchatter","content_type":"application/pdf","success":1,"file_size":310598,"file_id":"8625","date_created":"2020-10-08T08:16:48Z","access_level":"open_access","checksum":"8951f094c8c7dae9ff8db885199bc296","date_updated":"2020-10-08T08:16:48Z"}],"publication_status":"published","type":"conference","date_updated":"2025-07-10T11:54:23Z","has_accepted_license":"1","article_processing_charge":"No","department":[{"_id":"DaAl"}],"title":"A persistent homology perspective to the link prediction problem","author":[{"last_name":"Bhatia","full_name":"Bhatia, Sumit","first_name":"Sumit"},{"full_name":"Chatterjee, Bapi","first_name":"Bapi","id":"3C41A08A-F248-11E8-B48F-1D18A9856A87","last_name":"Chatterjee","orcid":"0000-0002-2742-4028"},{"last_name":"Nathani","first_name":"Deepak","full_name":"Nathani, Deepak"},{"first_name":"Manohar","full_name":"Kaul, Manohar","last_name":"Kaul"}],"quality_controlled":"1","publisher":"Springer Nature","ddc":["004"],"file_date_updated":"2020-10-08T08:16:48Z","external_id":{"isi":["000843927300003"]},"project":[{"grant_number":"754411","call_identifier":"H2020","name":"ISTplus - Postdoctoral Fellowships","_id":"260C2330-B435-11E9-9278-68D0E5697425"}],"conference":{"location":"Lisbon, Portugal","start_date":"2019-12-10","name":"COMPLEX: International Conference on Complex Networks and their Applications","end_date":"2019-12-12"},"day":"01","year":"2020","volume":881,"alternative_title":["SCI"],"isi":1,"doi":"10.1007/978-3-030-36687-2_3","oa_version":"Submitted Version","citation":{"apa":"Bhatia, S., Chatterjee, B., Nathani, D., & Kaul, M. (2020). A persistent homology perspective to the link prediction problem. In Complex Networks and their applications VIII (Vol. 881, pp. 27–39). Lisbon, Portugal: Springer Nature. https://doi.org/10.1007/978-3-030-36687-2_3","chicago":"Bhatia, Sumit, Bapi Chatterjee, Deepak Nathani, and Manohar Kaul. “A Persistent Homology Perspective to the Link Prediction Problem.” In Complex Networks and Their Applications VIII, 881:27–39. Springer Nature, 2020. https://doi.org/10.1007/978-3-030-36687-2_3.","ieee":"S. Bhatia, B. Chatterjee, D. Nathani, and M. Kaul, “A persistent homology perspective to the link prediction problem,” in Complex Networks and their applications VIII, Lisbon, Portugal, 2020, vol. 881, pp. 27–39.","ama":"Bhatia S, Chatterjee B, Nathani D, Kaul M. A persistent homology perspective to the link prediction problem. In: Complex Networks and Their Applications VIII. Vol 881. Springer Nature; 2020:27-39. doi:10.1007/978-3-030-36687-2_3","mla":"Bhatia, Sumit, et al. “A Persistent Homology Perspective to the Link Prediction Problem.” Complex Networks and Their Applications VIII, vol. 881, Springer Nature, 2020, pp. 27–39, doi:10.1007/978-3-030-36687-2_3.","ista":"Bhatia S, Chatterjee B, Nathani D, Kaul M. 2020. A persistent homology perspective to the link prediction problem. Complex Networks and their applications VIII. COMPLEX: International Conference on Complex Networks and their Applications, SCI, vol. 881, 27–39.","short":"S. Bhatia, B. Chatterjee, D. Nathani, M. Kaul, in:, Complex Networks and Their Applications VIII, Springer Nature, 2020, pp. 27–39."},"_id":"7213","intvolume":" 881","language":[{"iso":"eng"}],"page":"27-39","scopus_import":"1","abstract":[{"text":"Persistent homology is a powerful tool in Topological Data Analysis (TDA) to capture the topological properties of data succinctly at different spatial resolutions. For graphical data, the shape, and structure of the neighborhood of individual data items (nodes) are an essential means of characterizing their properties. We propose the use of persistent homology methods to capture structural and topological properties of graphs and use it to address the problem of link prediction. We achieve encouraging results on nine different real-world datasets that attest to the potential of persistent homology-based methods for network analysis.","lang":"eng"}],"ec_funded":1,"oa":1,"publication":"Complex Networks and their applications VIII","date_created":"2019-12-29T23:00:45Z","month":"01","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","date_published":"2020-01-01T00:00:00Z","publication_identifier":{"eissn":["1860-9503"],"isbn":["9783030366865"],"issn":["1860-949X"]}},{"status":"public","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","date_published":"2020-08-01T00:00:00Z","publication_identifier":{"eissn":["1399-0020"],"issn":["0901-5027"]},"language":[{"iso":"eng"}],"page":"P1007-1015","citation":{"ieee":"P. Dodier et al., “Single-stage bone resection and cranioplastic reconstruction: Comparison of a novel software-derived PEEK workflow with the standard reconstructive method,” International Journal of Oral and Maxillofacial Surgery, vol. 49, no. 8. Elsevier, pp. P1007-1015, 2020.","chicago":"Dodier, Philippe, Fabian Winter, Thomas Auzinger, Gabriel Mistelbauer, Josa M. Frischer, Wei Te Wang, Ammar Mallouhi, et al. “Single-Stage Bone Resection and Cranioplastic Reconstruction: Comparison of a Novel Software-Derived PEEK Workflow with the Standard Reconstructive Method.” International Journal of Oral and Maxillofacial Surgery. Elsevier, 2020. https://doi.org/10.1016/j.ijom.2019.11.011.","apa":"Dodier, P., Winter, F., Auzinger, T., Mistelbauer, G., Frischer, J. M., Wang, W. T., … Bavinzski, G. (2020). Single-stage bone resection and cranioplastic reconstruction: Comparison of a novel software-derived PEEK workflow with the standard reconstructive method. International Journal of Oral and Maxillofacial Surgery. Elsevier. https://doi.org/10.1016/j.ijom.2019.11.011","ama":"Dodier P, Winter F, Auzinger T, et al. Single-stage bone resection and cranioplastic reconstruction: Comparison of a novel software-derived PEEK workflow with the standard reconstructive method. International Journal of Oral and Maxillofacial Surgery. 2020;49(8):P1007-1015. doi:10.1016/j.ijom.2019.11.011","mla":"Dodier, Philippe, et al. “Single-Stage Bone Resection and Cranioplastic Reconstruction: Comparison of a Novel Software-Derived PEEK Workflow with the Standard Reconstructive Method.” International Journal of Oral and Maxillofacial Surgery, vol. 49, no. 8, Elsevier, 2020, pp. P1007-1015, doi:10.1016/j.ijom.2019.11.011.","ista":"Dodier P, Winter F, Auzinger T, Mistelbauer G, Frischer JM, Wang WT, Mallouhi A, Marik W, Wolfsberger S, Reissig L, Hammadi F, Matula C, Baumann A, Bavinzski G. 2020. Single-stage bone resection and cranioplastic reconstruction: Comparison of a novel software-derived PEEK workflow with the standard reconstructive method. International Journal of Oral and Maxillofacial Surgery. 49(8), P1007-1015.","short":"P. Dodier, F. Winter, T. Auzinger, G. Mistelbauer, J.M. Frischer, W.T. Wang, A. Mallouhi, W. Marik, S. Wolfsberger, L. Reissig, F. Hammadi, C. Matula, A. Baumann, G. Bavinzski, International Journal of Oral and Maxillofacial Surgery 49 (2020) P1007-1015."},"doi":"10.1016/j.ijom.2019.11.011","oa_version":"None","intvolume":" 49","_id":"7218","publication":"International Journal of Oral and Maxillofacial Surgery","month":"08","date_created":"2019-12-29T23:00:47Z","pmid":1,"scopus_import":"1","abstract":[{"text":"The combined resection of skull-infiltrating tumours and immediate cranioplastic reconstruction predominantly relies on freehand-moulded solutions. Techniques that enable this procedure to be performed easily in routine clinical practice would be useful. A cadaveric study was developed in which a new software tool was used to perform single-stage reconstructions with prefabricated implants after the resection of skull-infiltrating pathologies. A novel 3D visualization and interaction framework was developed to create 10 virtual craniotomies in five cadaveric specimens. Polyether ether ketone (PEEK) implants were manufactured according to the bone defects. The image-guided craniotomy was reconstructed with PEEK and compared to polymethyl methacrylate (PMMA). Navigational accuracy and surgical precision were assessed. The PEEK workflow resulted in up to 10-fold shorter reconstruction times than the standard technique. Surgical precision was reflected by the mean 1.1 ± 0.29 mm distance between the virtual and real craniotomy, with submillimetre precision in 50%. Assessment of the global offset between virtual and actual craniotomy revealed an average shift of 4.5 ± 3.6 mm. The results validated the ‘elective single-stage cranioplasty’ technique as a state-of-the-art virtual planning method and surgical workflow. This patient-tailored workflow could significantly reduce surgical times compared to the traditional, intraoperative acrylic moulding method and may be an option for the reconstruction of bone defects in the craniofacial region.","lang":"eng"}],"external_id":{"isi":["000556819800005"],"pmid":["31866145"]},"article_type":"original","isi":1,"day":"01","volume":49,"year":"2020","issue":"8","date_updated":"2023-08-17T14:15:22Z","department":[{"_id":"BeBi"}],"title":"Single-stage bone resection and cranioplastic reconstruction: Comparison of a novel software-derived PEEK workflow with the standard reconstructive method","article_processing_charge":"No","type":"journal_article","publication_status":"published","publisher":"Elsevier","quality_controlled":"1","author":[{"first_name":"Philippe","full_name":"Dodier, Philippe","last_name":"Dodier"},{"full_name":"Winter, Fabian","first_name":"Fabian","last_name":"Winter"},{"id":"4718F954-F248-11E8-B48F-1D18A9856A87","last_name":"Auzinger","orcid":"0000-0002-1546-3265","full_name":"Auzinger, Thomas","first_name":"Thomas"},{"last_name":"Mistelbauer","full_name":"Mistelbauer, Gabriel","first_name":"Gabriel"},{"last_name":"Frischer","first_name":"Josa M.","full_name":"Frischer, Josa M."},{"first_name":"Wei Te","full_name":"Wang, Wei Te","last_name":"Wang"},{"full_name":"Mallouhi, Ammar","first_name":"Ammar","last_name":"Mallouhi"},{"last_name":"Marik","first_name":"Wolfgang","full_name":"Marik, Wolfgang"},{"last_name":"Wolfsberger","full_name":"Wolfsberger, Stefan","first_name":"Stefan"},{"last_name":"Reissig","full_name":"Reissig, Lukas","first_name":"Lukas"},{"first_name":"Firas","full_name":"Hammadi, Firas","last_name":"Hammadi"},{"full_name":"Matula, Christian","first_name":"Christian","last_name":"Matula"},{"first_name":"Arnulf","full_name":"Baumann, Arnulf","last_name":"Baumann"},{"last_name":"Bavinzski","full_name":"Bavinzski, Gerhard","first_name":"Gerhard"}]},{"publisher":"Elsevier","quality_controlled":"1","author":[{"last_name":"Xiao","full_name":"Xiao, Guanghui","first_name":"Guanghui"},{"id":"3B6137F2-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-2627-6956","last_name":"Zhang","full_name":"Zhang, Yuzhou","first_name":"Yuzhou"}],"title":"Adaptive growth: Shaping auxin-mediated root system architecture","department":[{"_id":"JiFr"}],"article_processing_charge":"No","issue":"2","date_updated":"2025-07-10T11:54:24Z","type":"journal_article","publication_status":"published","isi":1,"volume":25,"year":"2020","day":"01","article_type":"original","external_id":{"pmid":["31843370"],"isi":["000508637500001"]},"month":"02","date_created":"2019-12-29T23:00:48Z","publication":"Trends in Plant Science","pmid":1,"abstract":[{"text":"Root system architecture (RSA), governed by the phytohormone auxin, endows plants with an adaptive advantage in particular environments. Using geographically representative arabidopsis (Arabidopsis thaliana) accessions as a resource for GWA mapping, Waidmann et al. and Ogura et al. recently identified two novel components involved in modulating auxin-mediated RSA and conferring plant fitness in particular habitats.","lang":"eng"}],"scopus_import":"1","page":"P121-123","language":[{"iso":"eng"}],"intvolume":" 25","corr_author":"1","_id":"7219","citation":{"apa":"Xiao, G., & Zhang, Y. (2020). Adaptive growth: Shaping auxin-mediated root system architecture. Trends in Plant Science. Elsevier. https://doi.org/10.1016/j.tplants.2019.12.001","chicago":"Xiao, Guanghui, and Yuzhou Zhang. “Adaptive Growth: Shaping Auxin-Mediated Root System Architecture.” Trends in Plant Science. Elsevier, 2020. https://doi.org/10.1016/j.tplants.2019.12.001.","ieee":"G. Xiao and Y. Zhang, “Adaptive growth: Shaping auxin-mediated root system architecture,” Trends in Plant Science, vol. 25, no. 2. Elsevier, pp. P121-123, 2020.","ama":"Xiao G, Zhang Y. Adaptive growth: Shaping auxin-mediated root system architecture. Trends in Plant Science. 2020;25(2):P121-123. doi:10.1016/j.tplants.2019.12.001","short":"G. Xiao, Y. Zhang, Trends in Plant Science 25 (2020) P121-123.","ista":"Xiao G, Zhang Y. 2020. Adaptive growth: Shaping auxin-mediated root system architecture. Trends in Plant Science. 25(2), P121-123.","mla":"Xiao, Guanghui, and Yuzhou Zhang. “Adaptive Growth: Shaping Auxin-Mediated Root System Architecture.” Trends in Plant Science, vol. 25, no. 2, Elsevier, 2020, pp. P121-123, doi:10.1016/j.tplants.2019.12.001."},"oa_version":"None","doi":"10.1016/j.tplants.2019.12.001","publication_identifier":{"issn":["1360-1385"]},"date_published":"2020-02-01T00:00:00Z","status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"publication_identifier":{"issn":["1878-8750"],"eissn":["1878-8769"]},"date_published":"2020-02-01T00:00:00Z","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","status":"public","scopus_import":"1","abstract":[{"text":"BACKGROUND:The introduction of image-guided methods to bypass surgery has resulted in optimized preoperative identification of the recipients and excellent patency rates. However, the recently presented methods have also been resource-consuming. In the present study, we have reported a cost-efficient planning workflow for extracranial-intracranial (EC-IC) revascularization combined with transdural indocyanine green videoangiography (tICG-VA). METHODS:We performed a retrospective review at a single tertiary referral center from 2011 to 2018. A novel software-derived workflow was applied for 25 of 92 bypass procedures during the study period. The precision and accuracy were assessed using tICG-VA identification of the cortical recipients and a comparison of the virtual and actual data. The data from a control group of 25 traditionally planned procedures were also matched. RESULTS:The intraoperative transfer time of the calculated coordinates averaged 0.8 minute (range, 0.4-1.9 minutes). The definitive recipients matched the targeted branches in 80%, and a neighboring branch was used in 16%. Our workflow led to a significant craniotomy size reduction in the study group compared with that in the control group (P = 0.005). tICG-VA was successfully applied in 19 cases. An average of 2 potential recipient arteries were identified transdurally, resulting in tailored durotomy and 3 craniotomy adjustments. Follow-up patency results were available for 49 bypass surgeries, comprising 54 grafts. The overall patency rate was 91% at a median follow-up period of 26 months. No significant difference was found in the patency rate between the study and control groups (P = 0.317). CONCLUSIONS:Our clinical results have validated the presented planning and surgical workflow and support the routine implementation of tICG-VA for recipient identification before durotomy.","lang":"eng"}],"pmid":1,"publication":"World Neurosurgery","month":"02","date_created":"2019-12-29T23:00:48Z","_id":"7220","intvolume":" 134","oa_version":"None","doi":"10.1016/j.wneu.2019.11.038","citation":{"mla":"Dodier, Philippe, et al. “Novel Software-Derived Workflow in Extracranial–Intracranial Bypass Surgery Validated by Transdural Indocyanine Green Videoangiography.” World Neurosurgery, vol. 134, no. 2, Elsevier, 2020, pp. e892–902, doi:10.1016/j.wneu.2019.11.038.","ista":"Dodier P, Auzinger T, Mistelbauer G, Wang WT, Ferraz-Leite H, Gruber A, Marik W, Winter F, Fischer G, Frischer JM, Bavinzski G. 2020. Novel software-derived workflow in extracranial–intracranial bypass surgery validated by transdural indocyanine green videoangiography. World Neurosurgery. 134(2), e892–e902.","short":"P. Dodier, T. Auzinger, G. Mistelbauer, W.T. Wang, H. Ferraz-Leite, A. Gruber, W. Marik, F. Winter, G. Fischer, J.M. Frischer, G. Bavinzski, World Neurosurgery 134 (2020) e892–e902.","ama":"Dodier P, Auzinger T, Mistelbauer G, et al. Novel software-derived workflow in extracranial–intracranial bypass surgery validated by transdural indocyanine green videoangiography. World Neurosurgery. 2020;134(2):e892-e902. doi:10.1016/j.wneu.2019.11.038","chicago":"Dodier, Philippe, Thomas Auzinger, Gabriel Mistelbauer, Wei Te Wang, Heber Ferraz-Leite, Andreas Gruber, Wolfgang Marik, et al. “Novel Software-Derived Workflow in Extracranial–Intracranial Bypass Surgery Validated by Transdural Indocyanine Green Videoangiography.” World Neurosurgery. Elsevier, 2020. https://doi.org/10.1016/j.wneu.2019.11.038.","apa":"Dodier, P., Auzinger, T., Mistelbauer, G., Wang, W. T., Ferraz-Leite, H., Gruber, A., … Bavinzski, G. (2020). Novel software-derived workflow in extracranial–intracranial bypass surgery validated by transdural indocyanine green videoangiography. World Neurosurgery. Elsevier. https://doi.org/10.1016/j.wneu.2019.11.038","ieee":"P. Dodier et al., “Novel software-derived workflow in extracranial–intracranial bypass surgery validated by transdural indocyanine green videoangiography,” World Neurosurgery, vol. 134, no. 2. Elsevier, pp. e892–e902, 2020."},"page":"e892-e902","language":[{"iso":"eng"}],"year":"2020","volume":134,"day":"01","isi":1,"article_type":"original","external_id":{"pmid":["31733380"],"isi":["000512878200104"]},"author":[{"full_name":"Dodier, Philippe","first_name":"Philippe","last_name":"Dodier"},{"full_name":"Auzinger, Thomas","first_name":"Thomas","id":"4718F954-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-1546-3265","last_name":"Auzinger"},{"full_name":"Mistelbauer, Gabriel","first_name":"Gabriel","last_name":"Mistelbauer"},{"last_name":"Wang","full_name":"Wang, Wei Te","first_name":"Wei Te"},{"last_name":"Ferraz-Leite","first_name":"Heber","full_name":"Ferraz-Leite, Heber"},{"first_name":"Andreas","full_name":"Gruber, Andreas","last_name":"Gruber"},{"full_name":"Marik, Wolfgang","first_name":"Wolfgang","last_name":"Marik"},{"first_name":"Fabian","full_name":"Winter, Fabian","last_name":"Winter"},{"first_name":"Gerrit","full_name":"Fischer, Gerrit","last_name":"Fischer"},{"first_name":"Josa M.","full_name":"Frischer, Josa M.","last_name":"Frischer"},{"first_name":"Gerhard","full_name":"Bavinzski, Gerhard","last_name":"Bavinzski"}],"quality_controlled":"1","publisher":"Elsevier","publication_status":"published","type":"journal_article","article_processing_charge":"No","title":"Novel software-derived workflow in extracranial–intracranial bypass surgery validated by transdural indocyanine green videoangiography","department":[{"_id":"BeBi"}],"date_updated":"2023-08-17T14:14:23Z","issue":"2"},{"author":[{"first_name":"Joel","full_name":"Rybicki, Joel","orcid":"0000-0002-6432-6646","last_name":"Rybicki","id":"334EFD2E-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Abrego, Nerea","first_name":"Nerea","last_name":"Abrego"},{"last_name":"Ovaskainen","first_name":"Otso","full_name":"Ovaskainen, Otso"}],"quality_controlled":"1","publisher":"Wiley","ddc":["000"],"file":[{"relation":"main_file","file_name":"2020_EcologyLetters_Rybicki.pdf","content_type":"application/pdf","creator":"dernst","file_size":3005474,"file_id":"7486","date_created":"2020-02-14T12:02:50Z","access_level":"open_access","checksum":"372f67f2744f4b6049e9778364766c22","date_updated":"2020-07-14T12:47:54Z"}],"publication_status":"published","type":"journal_article","date_updated":"2025-06-12T07:28:52Z","issue":"3","has_accepted_license":"1","article_processing_charge":"Yes (via OA deal)","department":[{"_id":"DaAl"}],"title":"Habitat fragmentation and species diversity in competitive communities","day":"01","year":"2020","volume":23,"isi":1,"file_date_updated":"2020-07-14T12:47:54Z","external_id":{"isi":["000503625200001"],"pmid":["31863571"]},"project":[{"name":"ISTplus - Postdoctoral Fellowships","_id":"260C2330-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","grant_number":"754411"},{"grant_number":"840605","call_identifier":"H2020","_id":"26A5D39A-B435-11E9-9278-68D0E5697425","name":"Coordination in constrained and natural distributed systems"}],"article_type":"original","abstract":[{"lang":"eng","text":"Habitat loss is one of the key drivers of the ongoing decline of biodiversity. However, ecologists still argue about how fragmentation of habitat (independent of habitat loss) affects species richness. The recently proposed habitat amount hypothesis posits that species richness only depends on the total amount of habitat in a local landscape. In contrast, empirical studies report contrasting patterns: some find positive and others negative effects of fragmentation per se on species richness. To explain this apparent disparity, we devise a stochastic, spatially explicit model of competitive species communities in heterogeneous habitats. The model shows that habitat loss and fragmentation have complex effects on species diversity in competitive communities. When the total amount of habitat is large, fragmentation per se tends to increase species diversity, but if the total amount of habitat is small, the situation is reversed: fragmentation per se decreases species diversity."}],"ec_funded":1,"scopus_import":"1","oa":1,"pmid":1,"date_created":"2020-01-04T11:04:30Z","month":"03","publication":"Ecology Letters","doi":"10.1111/ele.13450","oa_version":"Published Version","citation":{"apa":"Rybicki, J., Abrego, N., & Ovaskainen, O. (2020). Habitat fragmentation and species diversity in competitive communities. Ecology Letters. Wiley. https://doi.org/10.1111/ele.13450","chicago":"Rybicki, Joel, Nerea Abrego, and Otso Ovaskainen. “Habitat Fragmentation and Species Diversity in Competitive Communities.” Ecology Letters. Wiley, 2020. https://doi.org/10.1111/ele.13450.","ieee":"J. Rybicki, N. Abrego, and O. Ovaskainen, “Habitat fragmentation and species diversity in competitive communities,” Ecology Letters, vol. 23, no. 3. Wiley, pp. 506–517, 2020.","ama":"Rybicki J, Abrego N, Ovaskainen O. Habitat fragmentation and species diversity in competitive communities. Ecology Letters. 2020;23(3):506-517. doi:10.1111/ele.13450","mla":"Rybicki, Joel, et al. “Habitat Fragmentation and Species Diversity in Competitive Communities.” Ecology Letters, vol. 23, no. 3, Wiley, 2020, pp. 506–17, doi:10.1111/ele.13450.","ista":"Rybicki J, Abrego N, Ovaskainen O. 2020. Habitat fragmentation and species diversity in competitive communities. Ecology Letters. 23(3), 506–517.","short":"J. Rybicki, N. Abrego, O. Ovaskainen, Ecology Letters 23 (2020) 506–517."},"_id":"7224","corr_author":"1","intvolume":" 23","language":[{"iso":"eng"}],"page":"506-517","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"publication_identifier":{"eissn":["1461-0248"],"issn":["1461-023X"]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","date_published":"2020-03-01T00:00:00Z"},{"alternative_title":["Current Topics in Developmental Biology"],"acknowledgement":"We thank Alexandra Schauer, Nicoletta Petridou and Feyza Nur Arslan for comments on the manuscript. Research in the Heisenberg laboratory is supported by an ERC Advanced Grant (MECSPEC 742573), ANR/FWF (I03601) and FWF/DFG (I03196) International Cooperation Grants. D. Pinheiro acknowledges a fellowship from EMBO ALTF (850-2017) and is currently supported by HFSP LTF (LT000429/2018-L2).","isi":1,"day":"01","volume":136,"year":"2020","project":[{"call_identifier":"H2020","grant_number":"742573","name":"Interaction and feedback between cell mechanics and fate specification in vertebrate gastrulation","_id":"260F1432-B435-11E9-9278-68D0E5697425"},{"grant_number":"I03601","call_identifier":"FWF","name":"Control of embryonic cleavage pattern","_id":"2646861A-B435-11E9-9278-68D0E5697425"},{"grant_number":"I03196","call_identifier":"FWF","name":"Control of epithelial cell layer spreading in zebrafish","_id":"2608FC64-B435-11E9-9278-68D0E5697425"},{"grant_number":"LT000429","name":"Coordination of mesendoderm fate specification and internalization during zebrafish gastrulation","_id":"266BC5CE-B435-11E9-9278-68D0E5697425"},{"grant_number":"ALTF 850-2017","name":"Coordination of mesendoderm cell fate specification and internalization during zebrafish gastrulation","_id":"26520D1E-B435-11E9-9278-68D0E5697425"}],"external_id":{"pmid":["31959295"],"isi":["000611830600013"]},"publisher":"Elsevier","quality_controlled":"1","author":[{"id":"2E839F16-F248-11E8-B48F-1D18A9856A87","last_name":"Nunes Pinheiro","orcid":"0000-0003-4333-7503","full_name":"Nunes Pinheiro, Diana C","first_name":"Diana C"},{"last_name":"Heisenberg","orcid":"0000-0002-0912-4566","id":"39427864-F248-11E8-B48F-1D18A9856A87","first_name":"Carl-Philipp J","full_name":"Heisenberg, Carl-Philipp J"}],"date_updated":"2025-07-10T11:54:25Z","title":"Zebrafish gastrulation: Putting fate in motion","department":[{"_id":"CaHe"}],"article_processing_charge":"No","type":"book_chapter","publication_status":"published","publication_identifier":{"issn":["0070-2153"]},"status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_published":"2020-06-01T00:00:00Z","date_created":"2020-01-05T23:00:46Z","month":"06","publication":"Gastrulation: From Embryonic Pattern to Form","pmid":1,"scopus_import":"1","abstract":[{"lang":"eng","text":"Gastrulation entails specification and formation of three embryonic germ layers—ectoderm, mesoderm and endoderm—thereby establishing the basis for the future body plan. In zebrafish embryos, germ layer specification occurs during blastula and early gastrula stages (Ho & Kimmel, 1993), a period when the main morphogenetic movements underlying gastrulation are initiated. Hence, the signals driving progenitor cell fate specification, such as Nodal ligands from the TGF-β family, also play key roles in regulating germ layer progenitor cell segregation (Carmany-Rampey & Schier, 2001; David & Rosa, 2001; Feldman et al., 2000; Gritsman et al., 1999; Keller et al., 2008). In this review, we summarize and discuss the main signaling pathways involved in germ layer progenitor cell fate specification and segregation, specifically focusing on recent advances in understanding the interplay between mesoderm and endoderm specification and the internalization movements at the onset of zebrafish gastrulation."}],"ec_funded":1,"language":[{"iso":"eng"}],"page":"343-375","citation":{"short":"D.C. Nunes Pinheiro, C.-P.J. Heisenberg, in:, Gastrulation: From Embryonic Pattern to Form, Elsevier, 2020, pp. 343–375.","mla":"Nunes Pinheiro, Diana C., and Carl-Philipp J. Heisenberg. “Zebrafish Gastrulation: Putting Fate in Motion.” Gastrulation: From Embryonic Pattern to Form, vol. 136, Elsevier, 2020, pp. 343–75, doi:10.1016/bs.ctdb.2019.10.009.","ista":"Nunes Pinheiro DC, Heisenberg C-PJ. 2020.Zebrafish gastrulation: Putting fate in motion. In: Gastrulation: From Embryonic Pattern to Form. Current Topics in Developmental Biology, vol. 136, 343–375.","ieee":"D. C. Nunes Pinheiro and C.-P. J. Heisenberg, “Zebrafish gastrulation: Putting fate in motion,” in Gastrulation: From Embryonic Pattern to Form, vol. 136, Elsevier, 2020, pp. 343–375.","chicago":"Nunes Pinheiro, Diana C, and Carl-Philipp J Heisenberg. “Zebrafish Gastrulation: Putting Fate in Motion.” In Gastrulation: From Embryonic Pattern to Form, 136:343–75. Elsevier, 2020. https://doi.org/10.1016/bs.ctdb.2019.10.009.","apa":"Nunes Pinheiro, D. C., & Heisenberg, C.-P. J. (2020). Zebrafish gastrulation: Putting fate in motion. In Gastrulation: From Embryonic Pattern to Form (Vol. 136, pp. 343–375). Elsevier. https://doi.org/10.1016/bs.ctdb.2019.10.009","ama":"Nunes Pinheiro DC, Heisenberg C-PJ. Zebrafish gastrulation: Putting fate in motion. In: Gastrulation: From Embryonic Pattern to Form. Vol 136. Elsevier; 2020:343-375. doi:10.1016/bs.ctdb.2019.10.009"},"doi":"10.1016/bs.ctdb.2019.10.009","oa_version":"None","intvolume":" 136","_id":"7227"},{"date_published":"2020-09-01T00:00:00Z","status":"public","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","publication_identifier":{"eissn":["1572-9613"],"issn":["0022-4715"]},"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"intvolume":" 180","corr_author":"1","_id":"7235","citation":{"short":"E.H. Lieb, R. Seiringer, Journal of Statistical Physics 180 (2020) 23–33.","ista":"Lieb EH, Seiringer R. 2020. Divergence of the effective mass of a polaron in the strong coupling limit. Journal of Statistical Physics. 180, 23–33.","mla":"Lieb, Elliott H., and Robert Seiringer. “Divergence of the Effective Mass of a Polaron in the Strong Coupling Limit.” Journal of Statistical Physics, vol. 180, Springer Nature, 2020, pp. 23–33, doi:10.1007/s10955-019-02322-3.","ama":"Lieb EH, Seiringer R. Divergence of the effective mass of a polaron in the strong coupling limit. Journal of Statistical Physics. 2020;180:23-33. doi:10.1007/s10955-019-02322-3","apa":"Lieb, E. H., & Seiringer, R. (2020). Divergence of the effective mass of a polaron in the strong coupling limit. Journal of Statistical Physics. Springer Nature. https://doi.org/10.1007/s10955-019-02322-3","ieee":"E. H. Lieb and R. Seiringer, “Divergence of the effective mass of a polaron in the strong coupling limit,” Journal of Statistical Physics, vol. 180. Springer Nature, pp. 23–33, 2020.","chicago":"Lieb, Elliott H., and Robert Seiringer. “Divergence of the Effective Mass of a Polaron in the Strong Coupling Limit.” Journal of Statistical Physics. Springer Nature, 2020. https://doi.org/10.1007/s10955-019-02322-3."},"oa_version":"Published Version","doi":"10.1007/s10955-019-02322-3","page":"23-33","language":[{"iso":"eng"}],"abstract":[{"text":"We consider the Fröhlich model of a polaron, and show that its effective mass diverges in thestrong coupling limit.","lang":"eng"}],"ec_funded":1,"scopus_import":"1","month":"09","publication":"Journal of Statistical Physics","date_created":"2020-01-07T09:42:03Z","oa":1,"file_date_updated":"2020-11-19T11:13:55Z","article_type":"original","project":[{"_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854","name":"IST Austria Open Access Fund"},{"call_identifier":"H2020","grant_number":"694227","name":"Analysis of quantum many-body systems","_id":"25C6DC12-B435-11E9-9278-68D0E5697425"}],"external_id":{"isi":["000556199700003"]},"volume":180,"year":"2020","day":"01","isi":1,"acknowledgement":"Open access funding provided by Institute of Science and Technology (IST Austria). Financial support through the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (Grant Agreement No. 694227; R.S.) is gratefully acknowledged.","type":"journal_article","publication_status":"published","file":[{"checksum":"1e67bee6728592f7bdcea2ad2d9366dc","access_level":"open_access","date_updated":"2020-11-19T11:13:55Z","file_name":"2020_JourStatPhysics_Lieb.pdf","content_type":"application/pdf","creator":"dernst","relation":"main_file","file_id":"8774","date_created":"2020-11-19T11:13:55Z","success":1,"file_size":279749}],"department":[{"_id":"RoSe"}],"title":"Divergence of the effective mass of a polaron in the strong coupling limit","article_processing_charge":"Yes (via OA deal)","has_accepted_license":"1","date_updated":"2025-04-14T07:27:01Z","quality_controlled":"1","author":[{"last_name":"Lieb","first_name":"Elliott H.","full_name":"Lieb, Elliott H."},{"first_name":"Robert","full_name":"Seiringer, Robert","last_name":"Seiringer","orcid":"0000-0002-6781-0521","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87"}],"publisher":"Springer Nature","ddc":["510","530"]},{"isi":1,"volume":90,"year":"2020","day":"01","license":"https://creativecommons.org/licenses/by-nc/4.0/","article_type":"original","project":[{"call_identifier":"H2020","grant_number":"754411","_id":"260C2330-B435-11E9-9278-68D0E5697425","name":"ISTplus - Postdoctoral Fellowships"}],"external_id":{"isi":["000508511600001"]},"file_date_updated":"2020-07-14T12:47:54Z","publisher":"Wiley","ddc":["570"],"quality_controlled":"1","author":[{"full_name":"Baskett, Carina","first_name":"Carina","id":"3B4A7CE2-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-7354-8574","last_name":"Baskett"},{"first_name":"Lucy","full_name":"Schroeder, Lucy","last_name":"Schroeder"},{"last_name":"Weber","full_name":"Weber, Marjorie G.","first_name":"Marjorie G."},{"full_name":"Schemske, Douglas W.","first_name":"Douglas W.","last_name":"Schemske"}],"title":"Multiple metrics of latitudinal patterns in insect pollination and herbivory for a tropical‐temperate congener pair","department":[{"_id":"NiBa"}],"article_processing_charge":"Yes (via OA deal)","has_accepted_license":"1","issue":"1","date_updated":"2025-04-14T07:44:07Z","type":"journal_article","publication_status":"published","file":[{"date_updated":"2020-07-14T12:47:54Z","access_level":"open_access","checksum":"ab8130c6e68101f5a091d05324c36f08","file_size":537941,"date_created":"2020-02-10T08:18:14Z","file_id":"7469","relation":"main_file","content_type":"application/pdf","creator":"dernst","file_name":"2020_EcologMono_Baskett.pdf"}],"publication_identifier":{"issn":["0012-9615"],"eissn":["1557-7015"]},"tmp":{"short":"CC BY-NC (4.0)","name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","image":"/images/cc_by_nc.png"},"article_number":"e01397","date_published":"2020-02-01T00:00:00Z","status":"public","user_id":"0043cee0-e5fc-11ee-9736-f83bc23afbf0","date_created":"2020-01-07T12:47:07Z","publication":"Ecological Monographs","month":"02","oa":1,"OA_place":"publisher","scopus_import":"1","ec_funded":1,"abstract":[{"text":"The biotic interactions hypothesis posits that biotic interactions are more important drivers of adaptation closer to the equator, evidenced by “stronger” contemporary interactions (e.g. greater interaction rates) and/or patterns of trait evolution consistent with a history of stronger interactions. Support for the hypothesis is mixed, but few studies span tropical and temperate regions while experimentally controlling for evolutionary history. Here, we integrate field observations and common garden experiments to quantify the relative importance of pollination and herbivory in a pair of tropical‐temperate congeneric perennial herbs. Phytolacca rivinoides and P. americana are pioneer species native to the Neotropics and the eastern USA, respectively. We compared plant‐pollinator and plant‐herbivore interactions between three tropical populations of P. rivinoides from Costa Rica and three temperate populations of P. americana from its northern range edge in Michigan and Ohio. For some metrics of interaction importance, we also included three subtropical populations of P. americana from its southern range edge in Florida. This approach confounds species and region but allows us, uniquely, to measure complementary proxies of interaction importance across a tropical‐temperate range in one system. To test the prediction that lower‐latitude plants are more reliant on insect pollinators, we quantified floral display and reward, insect visitation rates, and self‐pollination ability (autogamy). To test the prediction that lower‐latitude plants experience more herbivore pressure, we quantified herbivory rates, herbivore abundance, and leaf palatability. We found evidence supporting the biotic interactions hypothesis for most comparisons between P. rivinoides and north‐temperate P. americana (floral display, insect visitation, autogamy, herbivory, herbivore abundance, and young‐leaf palatability). Results for subtropical P. americana populations, however, were typically not intermediate between P. rivinoides and north‐temperate P. americana, as would be predicted by a linear latitudinal gradient in interaction importance. Subtropical young‐leaf palatability was intermediate, but subtropical mature leaves were the least palatable, and pollination‐related traits did not differ between temperate and subtropical regions. These nonlinear patterns of interaction importance suggest future work to relate interaction importance to climatic or biotic thresholds. In sum, we found that the biotic interactions hypothesis was more consistently supported at the larger spatial scale of our study.","lang":"eng"}],"language":[{"iso":"eng"}],"intvolume":" 90","OA_type":"hybrid","_id":"7236","citation":{"ama":"Baskett C, Schroeder L, Weber MG, Schemske DW. Multiple metrics of latitudinal patterns in insect pollination and herbivory for a tropical‐temperate congener pair. Ecological Monographs. 2020;90(1). doi:10.1002/ecm.1397","apa":"Baskett, C., Schroeder, L., Weber, M. G., & Schemske, D. W. (2020). Multiple metrics of latitudinal patterns in insect pollination and herbivory for a tropical‐temperate congener pair. Ecological Monographs. Wiley. https://doi.org/10.1002/ecm.1397","ieee":"C. Baskett, L. Schroeder, M. G. Weber, and D. W. Schemske, “Multiple metrics of latitudinal patterns in insect pollination and herbivory for a tropical‐temperate congener pair,” Ecological Monographs, vol. 90, no. 1. Wiley, 2020.","chicago":"Baskett, Carina, Lucy Schroeder, Marjorie G. Weber, and Douglas W. Schemske. “Multiple Metrics of Latitudinal Patterns in Insect Pollination and Herbivory for a Tropical‐temperate Congener Pair.” Ecological Monographs. Wiley, 2020. https://doi.org/10.1002/ecm.1397.","mla":"Baskett, Carina, et al. “Multiple Metrics of Latitudinal Patterns in Insect Pollination and Herbivory for a Tropical‐temperate Congener Pair.” Ecological Monographs, vol. 90, no. 1, e01397, Wiley, 2020, doi:10.1002/ecm.1397.","ista":"Baskett C, Schroeder L, Weber MG, Schemske DW. 2020. Multiple metrics of latitudinal patterns in insect pollination and herbivory for a tropical‐temperate congener pair. Ecological Monographs. 90(1), e01397.","short":"C. Baskett, L. Schroeder, M.G. Weber, D.W. Schemske, Ecological Monographs 90 (2020)."},"oa_version":"Published Version","doi":"10.1002/ecm.1397"},{"pmid":1,"month":"01","publication":"Nature Communications","date_created":"2020-01-11T10:42:48Z","oa":1,"scopus_import":"1","abstract":[{"lang":"eng","text":"The cyclin-dependent kinase inhibitor p57KIP2 is encoded by the imprinted Cdkn1c locus, exhibits maternal expression, and is essential for cerebral cortex development. How Cdkn1c regulates corticogenesis is however not clear. To this end we employ Mosaic Analysis with Double Markers (MADM) technology to genetically dissect Cdkn1c gene function in corticogenesis at single cell resolution. We find that the previously described growth-inhibitory Cdkn1c function is a non-cell-autonomous one, acting on the whole organism. In contrast we reveal a growth-promoting cell-autonomous Cdkn1c function which at the mechanistic level mediates radial glial progenitor cell and nascent projection neuron survival. Strikingly, the growth-promoting function of Cdkn1c is highly dosage sensitive but not subject to genomic imprinting. Collectively, our results suggest that the Cdkn1c locus regulates cortical development through distinct cell-autonomous and non-cell-autonomous mechanisms. More generally, our study highlights the importance to probe the relative contributions of cell intrinsic gene function and tissue-wide mechanisms to the overall phenotype."}],"ec_funded":1,"language":[{"iso":"eng"}],"corr_author":"1","_id":"7253","intvolume":" 11","oa_version":"Published Version","doi":"10.1038/s41467-019-14077-2","citation":{"ama":"Laukoter S, Beattie RJ, Pauler F, Amberg N, Nakayama KI, Hippenmeyer S. Imprinted Cdkn1c genomic locus cell-autonomously promotes cell survival in cerebral cortex development. Nature Communications. 2020;11. doi:10.1038/s41467-019-14077-2","chicago":"Laukoter, Susanne, Robert J Beattie, Florian Pauler, Nicole Amberg, Keiichi I. Nakayama, and Simon Hippenmeyer. “Imprinted Cdkn1c Genomic Locus Cell-Autonomously Promotes Cell Survival in Cerebral Cortex Development.” Nature Communications. Springer Nature, 2020. https://doi.org/10.1038/s41467-019-14077-2.","ieee":"S. Laukoter, R. J. Beattie, F. Pauler, N. Amberg, K. I. Nakayama, and S. Hippenmeyer, “Imprinted Cdkn1c genomic locus cell-autonomously promotes cell survival in cerebral cortex development,” Nature Communications, vol. 11. Springer Nature, 2020.","apa":"Laukoter, S., Beattie, R. J., Pauler, F., Amberg, N., Nakayama, K. I., & Hippenmeyer, S. (2020). Imprinted Cdkn1c genomic locus cell-autonomously promotes cell survival in cerebral cortex development. Nature Communications. Springer Nature. https://doi.org/10.1038/s41467-019-14077-2","short":"S. Laukoter, R.J. Beattie, F. Pauler, N. Amberg, K.I. Nakayama, S. Hippenmeyer, Nature Communications 11 (2020).","mla":"Laukoter, Susanne, et al. “Imprinted Cdkn1c Genomic Locus Cell-Autonomously Promotes Cell Survival in Cerebral Cortex Development.” Nature Communications, vol. 11, 195, Springer Nature, 2020, doi:10.1038/s41467-019-14077-2.","ista":"Laukoter S, Beattie RJ, Pauler F, Amberg N, Nakayama KI, Hippenmeyer S. 2020. Imprinted Cdkn1c genomic locus cell-autonomously promotes cell survival in cerebral cortex development. Nature Communications. 11, 195."},"acknowledged_ssus":[{"_id":"PreCl"}],"publication_identifier":{"issn":["2041-1723"]},"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"article_number":"195","date_published":"2020-01-10T00:00:00Z","related_material":{"link":[{"url":"https://ist.ac.at/en/news/new-function-for-potential-tumour-suppressor-in-brain-development/","description":"News on IST Homepage","relation":"press_release"}]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","publisher":"Springer Nature","ddc":["570"],"author":[{"full_name":"Laukoter, Susanne","first_name":"Susanne","id":"2D6B7A9A-F248-11E8-B48F-1D18A9856A87","last_name":"Laukoter","orcid":"0000-0002-7903-3010"},{"first_name":"Robert J","full_name":"Beattie, Robert J","last_name":"Beattie","orcid":"0000-0002-8483-8753","id":"2E26DF60-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Florian","full_name":"Pauler, Florian","orcid":"0000-0002-7462-0048","last_name":"Pauler","id":"48EA0138-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Amberg, Nicole","first_name":"Nicole","id":"4CD6AAC6-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-3183-8207","last_name":"Amberg"},{"last_name":"Nakayama","first_name":"Keiichi I.","full_name":"Nakayama, Keiichi I."},{"last_name":"Hippenmeyer","orcid":"0000-0003-2279-1061","id":"37B36620-F248-11E8-B48F-1D18A9856A87","first_name":"Simon","full_name":"Hippenmeyer, Simon"}],"quality_controlled":"1","article_processing_charge":"No","department":[{"_id":"SiHi"}],"title":"Imprinted Cdkn1c genomic locus cell-autonomously promotes cell survival in cerebral cortex development","date_updated":"2025-06-12T07:30:49Z","has_accepted_license":"1","publication_status":"published","type":"journal_article","file":[{"file_size":8063333,"date_created":"2020-01-13T07:42:31Z","file_id":"7261","relation":"main_file","content_type":"application/pdf","creator":"dernst","file_name":"2020_NatureComm_Laukoter.pdf","date_updated":"2020-07-14T12:47:54Z","access_level":"open_access","checksum":"ebf1ed522f4e0be8d94c939c1806a709"}],"isi":1,"year":"2020","volume":11,"day":"10","article_type":"original","external_id":{"isi":["000551459000005"],"pmid":["31924768"]},"project":[{"call_identifier":"FWF","grant_number":"T01031","name":"Role of Eed in neural stem cell lineage progression","_id":"268F8446-B435-11E9-9278-68D0E5697425"},{"call_identifier":"FWF","grant_number":"M02416","name":"Molecular Mechanisms Regulating Gliogenesis in the Neocortex","_id":"264E56E2-B435-11E9-9278-68D0E5697425"},{"call_identifier":"H2020","grant_number":"725780","_id":"260018B0-B435-11E9-9278-68D0E5697425","name":"Principles of Neural Stem Cell Lineage Progression in Cerebral Cortex Development"},{"grant_number":"LS13-002","name":"Mapping Cell-Type Specificity of the Genomic Imprintome in the Brain","_id":"25D92700-B435-11E9-9278-68D0E5697425"}],"file_date_updated":"2020-07-14T12:47:54Z"},{"article_processing_charge":"No","title":"Getting to the root of concurrent binary search tree performance","page":"295-306","department":[{"_id":"DaAl"}],"language":[{"iso":"eng"}],"date_updated":"2025-04-15T07:40:57Z","publication_status":"published","_id":"7272","type":"conference","oa_version":"Published Version","citation":{"mla":"Arbel-Raviv, Maya, et al. “Getting to the Root of Concurrent Binary Search Tree Performance.” Proceedings of the 2018 USENIX Annual Technical Conference, USENIX Association, 2020, pp. 295–306.","ista":"Arbel-Raviv M, Brown TA, Morrison A. 2020. Getting to the root of concurrent binary search tree performance. Proceedings of the 2018 USENIX Annual Technical Conference. USENIX: Annual Technical Conference, 295–306.","short":"M. Arbel-Raviv, T.A. Brown, A. Morrison, in:, Proceedings of the 2018 USENIX Annual Technical Conference, USENIX Association, 2020, pp. 295–306.","ieee":"M. Arbel-Raviv, T. A. Brown, and A. Morrison, “Getting to the root of concurrent binary search tree performance,” in Proceedings of the 2018 USENIX Annual Technical Conference, Boston, MA, United States, 2020, pp. 295–306.","apa":"Arbel-Raviv, M., Brown, T. A., & Morrison, A. (2020). Getting to the root of concurrent binary search tree performance. In Proceedings of the 2018 USENIX Annual Technical Conference (pp. 295–306). Boston, MA, United States: USENIX Association.","chicago":"Arbel-Raviv, Maya, Trevor A Brown, and Adam Morrison. “Getting to the Root of Concurrent Binary Search Tree Performance.” In Proceedings of the 2018 USENIX Annual Technical Conference, 295–306. USENIX Association, 2020.","ama":"Arbel-Raviv M, Brown TA, Morrison A. Getting to the root of concurrent binary search tree performance. In: Proceedings of the 2018 USENIX Annual Technical Conference. USENIX Association; 2020:295-306."},"publisher":"USENIX Association","ddc":["000"],"month":"01","date_created":"2020-01-14T07:27:08Z","publication":"Proceedings of the 2018 USENIX Annual Technical Conference","oa":1,"abstract":[{"text":"Many systems rely on optimistic concurrent search trees for multi-core scalability. In principle, optimistic trees have a simple performance story: searches are read-only and so run in parallel, with writes to shared memory occurring only when modifying the data structure. However, this paper shows that in practice, obtaining the full performance benefits of optimistic search trees is not so simple.\r\n\r\nWe focus on optimistic binary search trees (BSTs) and perform a detailed performance analysis of 10 state-of-the-art BSTs on large scale x86-64 hardware, using both microbenchmarks and an in-memory database system. We find and explain significant unexpected performance differences between BSTs with similar tree structure and search implementations, which we trace to subtle performance-degrading interactions of BSTs with systems software and hardware subsystems. We further derive a prescriptive approach to avoid this performance degradation, as well as algorithmic insights on optimistic BST design. Our work underlines the gap between the theory and practice of multi-core performance, and calls for further research to help bridge this gap.","lang":"eng"}],"scopus_import":"1","author":[{"first_name":"Maya","full_name":"Arbel-Raviv, Maya","last_name":"Arbel-Raviv"},{"first_name":"Trevor A","full_name":"Brown, Trevor A","last_name":"Brown","id":"3569F0A0-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Morrison, Adam","first_name":"Adam","last_name":"Morrison"}],"quality_controlled":"1","main_file_link":[{"url":"https://www.usenix.org/system/files/conference/atc18/atc18-arbel-raviv.pdf","open_access":"1"}],"conference":{"location":"Boston, MA, United States","end_date":"2018-07-13","name":"USENIX: Annual Technical Conference","start_date":"2018-07-11"},"project":[{"name":"NSERC Postdoctoral fellowship","_id":"26450934-B435-11E9-9278-68D0E5697425"}],"date_published":"2020-01-01T00:00:00Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","year":"2020","publication_identifier":{"isbn":["9781939133021"]},"day":"01"},{"quality_controlled":"1","author":[{"first_name":"Barbara","full_name":"Milutinovic, Barbara","orcid":"0000-0002-8214-4758","last_name":"Milutinovic","id":"2CDC32B8-F248-11E8-B48F-1D18A9856A87"},{"id":"42462816-F248-11E8-B48F-1D18A9856A87","last_name":"Stock","full_name":"Stock, Miriam","first_name":"Miriam"},{"last_name":"Grasse","id":"406F989C-F248-11E8-B48F-1D18A9856A87","first_name":"Anna V","full_name":"Grasse, Anna V"},{"id":"31757262-F248-11E8-B48F-1D18A9856A87","last_name":"Naderlinger","full_name":"Naderlinger, Elisabeth","first_name":"Elisabeth"},{"orcid":"0000-0001-5116-955X","last_name":"Hilbe","id":"2FDF8F3C-F248-11E8-B48F-1D18A9856A87","first_name":"Christian","full_name":"Hilbe, Christian"},{"id":"2F64EC8C-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2193-3868","last_name":"Cremer","full_name":"Cremer, Sylvia","first_name":"Sylvia"}],"publisher":"Wiley","ddc":["570"],"file":[{"success":1,"file_size":561749,"date_created":"2020-11-19T11:27:10Z","file_id":"8776","relation":"main_file","creator":"dernst","content_type":"application/pdf","file_name":"2020_EcologyLetters_Milutinovic.pdf","date_updated":"2020-11-19T11:27:10Z","access_level":"open_access","checksum":"0cd8be386fa219db02845b7c3991ce04"}],"type":"journal_article","publication_status":"published","issue":"3","has_accepted_license":"1","date_updated":"2025-06-12T07:32:35Z","department":[{"_id":"SyCr"},{"_id":"KrCh"}],"title":"Social immunity modulates competition between coinfecting pathogens","article_processing_charge":"Yes (via OA deal)","day":"01","volume":23,"year":"2020","acknowledgement":"We thank Bernhardt Steinwender and Jorgen Eilenberg for the fungal strains, Xavier Espadaler, Mireia Diaz, Christiane Wanke, Lumi Viljakainen and the Social Immunity Team at IST Austria, for help with ant collection, and Wanda Gorecka and Gertraud Stift of the IST Austria Life Science Facility for technical support. We are thankful to Dieter Ebert for input at all stages of the project, Roger Mundry for statistical advice, Hinrich Schulenburg, Paul Schmid-Hempel, Yuko\r\nUlrich and Joachim Kurtz for project discussion, Bor Kavcic for advice on growth curves, Marcus Roper for advice on modelling work and comments on the manuscript, as well as Marjon de Vos, Weini Huang and the Social Immunity Team for comments on the manuscript.\r\nThis study was funded by the German Research Foundation (DFG) within the Priority Programme 1399 Host-parasite Coevolution (CR 118/3 to S.C.) and the People Programme\r\n(Marie Curie Actions) of the European Union’s Seventh Framework Programme (FP7/2007-2013) under REA grant agreement no 291734 (ISTFELLOW to B.M.). ","isi":1,"file_date_updated":"2020-11-19T11:27:10Z","project":[{"name":"International IST Postdoc Fellowship Programme","_id":"25681D80-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","grant_number":"291734"},{"grant_number":"CR-118/3-1","name":"Host-Parasite Coevolution","_id":"25DAF0B2-B435-11E9-9278-68D0E5697425"}],"external_id":{"pmid":["31950595"],"isi":["000507515900001"]},"article_type":"letter_note","scopus_import":"1","ec_funded":1,"abstract":[{"lang":"eng","text":"Coinfections with multiple pathogens can result in complex within‐host dynamics affecting virulence and transmission. While multiple infections are intensively studied in solitary hosts, it is so far unresolved how social host interactions interfere with pathogen competition, and if this depends on coinfection diversity. We studied how the collective disease defences of ants – their social immunity – influence pathogen competition in coinfections of same or different fungal pathogen species. Social immunity reduced virulence for all pathogen combinations, but interfered with spore production only in different‐species coinfections. Here, it decreased overall pathogen sporulation success while increasing co‐sporulation on individual cadavers and maintaining a higher pathogen diversity at the community level. Mathematical modelling revealed that host sanitary care alone can modulate competitive outcomes between pathogens, giving advantage to fast‐germinating, thus less grooming‐sensitive ones. Host social interactions can hence modulate infection dynamics in coinfected group members, thereby altering pathogen communities at the host level and population level."}],"oa":1,"date_created":"2020-01-20T13:32:12Z","publication":"Ecology Letters","month":"03","pmid":1,"citation":{"ama":"Milutinovic B, Stock M, Grasse AV, Naderlinger E, Hilbe C, Cremer S. Social immunity modulates competition between coinfecting pathogens. Ecology Letters. 2020;23(3):565-574. doi:10.1111/ele.13458","ieee":"B. Milutinovic, M. Stock, A. V. Grasse, E. Naderlinger, C. Hilbe, and S. Cremer, “Social immunity modulates competition between coinfecting pathogens,” Ecology Letters, vol. 23, no. 3. Wiley, pp. 565–574, 2020.","apa":"Milutinovic, B., Stock, M., Grasse, A. V., Naderlinger, E., Hilbe, C., & Cremer, S. (2020). Social immunity modulates competition between coinfecting pathogens. Ecology Letters. Wiley. https://doi.org/10.1111/ele.13458","chicago":"Milutinovic, Barbara, Miriam Stock, Anna V Grasse, Elisabeth Naderlinger, Christian Hilbe, and Sylvia Cremer. “Social Immunity Modulates Competition between Coinfecting Pathogens.” Ecology Letters. Wiley, 2020. https://doi.org/10.1111/ele.13458.","short":"B. Milutinovic, M. Stock, A.V. Grasse, E. Naderlinger, C. Hilbe, S. Cremer, Ecology Letters 23 (2020) 565–574.","mla":"Milutinovic, Barbara, et al. “Social Immunity Modulates Competition between Coinfecting Pathogens.” Ecology Letters, vol. 23, no. 3, Wiley, 2020, pp. 565–74, doi:10.1111/ele.13458.","ista":"Milutinovic B, Stock M, Grasse AV, Naderlinger E, Hilbe C, Cremer S. 2020. Social immunity modulates competition between coinfecting pathogens. Ecology Letters. 23(3), 565–574."},"oa_version":"Published Version","doi":"10.1111/ele.13458","intvolume":" 23","_id":"7343","corr_author":"1","language":[{"iso":"eng"}],"page":"565-574","tmp":{"short":"CC BY-NC (4.0)","name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","image":"/images/cc_by_nc.png"},"publication_identifier":{"eissn":["1461-0248"],"issn":["1461-023X"]},"acknowledged_ssus":[{"_id":"LifeSc"}],"status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","related_material":{"record":[{"status":"public","relation":"research_data","id":"13060"}],"link":[{"url":"https://ist.ac.at/en/news/social-ants-shapes-disease-outcome/","description":"News on IST Homepage","relation":"press_release"}]},"date_published":"2020-03-01T00:00:00Z"}]