[{"article_processing_charge":"No","OA_type":"closed access","page":"1532-1544","quality_controlled":"1","_id":"20868","title":"Projecting the morbidity burden of mental and behavioral disorders associated with increasing humid heat in Shanghai","abstract":[{"text":"Residents of low-latitude megacities face growing vulnerability to humid-heat stress under urbanization and global warming, yet limited research has assessed the morbidity burden of mental and behavioral disorders (MBDs) linked to humid-heat exposures in these cities. Here we quantify the hospital admissions of MBDs in Shanghai, a megacity of over 25 million inhabitants, attributable to humid heat, and project future burdens under various greenhouse gas (GHG)-emission and population scenarios. Humid heat drives a higher morbidity burden than high temperature alone, especially in humid-heat nights. Without population change, the humid-heat-related morbidity burden of MBDs would increase by 68.2% (95% empirical confidence interval 56.7%–81.6%) under the highest-GHG-emission scenario by the 2090s, while 8,465 (95% empirical confidence interval 6,928–10,053) cases would be avoided by reducing emissions to the lowest pathway. With projected population decline, the attributable hospital admissions will decrease toward century’s end. These findings highlight the benefit of GHG mitigation in reducing the growing MBD risks posed by extreme humid heat.","lang":"eng"}],"type":"journal_article","department":[{"_id":"GaNo"}],"year":"2025","status":"public","intvolume":"         3","volume":3,"issue":"12","project":[{"grant_number":"101057429","name":"Reducing the impact of major environmental challenges on mental health","_id":"349d1832-11ca-11ed-8bc3-d79b574010e0"}],"day":"01","scopus_import":"1","language":[{"iso":"eng"}],"publication_identifier":{"issn":["2731-6076"]},"publication_status":"published","publisher":"Springer Nature","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","acknowledgement":"This research was supported by the National Natural Science Foundation of China (grants 42288101 and 42175066) and Shanghai International Science and Technology Partnership Project (grant 21230780200). G.S. is supported by the China Brain Project (grant 2025ZD0215100), the National Natural Science Foundation of China (grant 82150710554), the Chinese National Key Project (grant 2023YFE0199700), the National Natural Science Foundation of China (grant W2541022) and the EC Horizon Europe: environMENTAL project.","date_created":"2025-12-29T12:11:28Z","publication":"Nature Mental Health","citation":{"ama":"Liang C, Yuan J, Zhang R, et al. Projecting the morbidity burden of mental and behavioral disorders associated with increasing humid heat in Shanghai. <i>Nature Mental Health</i>. 2025;3(12):1532-1544. doi:<a href=\"https://doi.org/10.1038/s44220-025-00519-y\">10.1038/s44220-025-00519-y</a>","short":"C. Liang, J. Yuan, R. Zhang, X. Tang, G. Schumann, E. Hitchen, E. Polemiti, E. Serin, H. Kebir, T.A. Lett, N. Vaidya, J.-C. Roy, H. Walter, A. Heinz, M. Ralser, S. Twardziok, R. Eils, M. Jentsch, U.-H. Taron, T. Schütz, K. Schepanski, T. Banaschewski, M. Neidhart, A. Meyer-Lindenberg, H. Tost, N. Holz, E. Schwarz, A. Stringaris, N. Christmann, K. Janson, F. Nees, M. Neidhart, B. Seefried, R. Aden, O.A. Andreassen, L.T. Westlye, D. van der Meer, S. Fernández-Cabello, R. Kjelkenes, H. Ask, M. Rapp, M. Tschorn, S.J. Böttger, A. Marquand, A. Bernas, G. Novarino, M. Slater, J. Gallego, Á. Pastor, G. Feixas, F.J. Eiroa-Orosa, M.M. Nöthen, A.J. Forstner, I. Claus, C. Mathey, S. Heilmann-Heimbach, P. Hoffmann, A. Miller, P. Sommer, K. Schmitt, J. Wilbertz, M. Patraskaki, V. Jirsa, S. Petkoski, A.-P. Athanasiadis, B. Spanlang, C. Pearmund, S. Hese, P. Renner, T. Jia, X. Chang, Y. Dai, Y. Xia, Y. Li, Y. Zhang, V. Calhoun, P. Thompson, N. Clinton, S. Desrivières, K. Agunbiade, X. Yu, Z. Zhang, D. Chen, A.H. Young, A. Schwalber, V. Köhler, B. Stahl, G. Ogoh, T. Schikowski, R. Brandlistuen, Nature Mental Health 3 (2025) 1532–1544.","ista":"Liang C, Yuan J, Zhang R, Tang X, Schumann G, Hitchen E, Polemiti E, Serin E, Kebir H, Lett TA, Vaidya N, Roy J-C, Walter H, Heinz A, Ralser M, Twardziok S, Eils R, Jentsch M, Taron U-H, Schütz T, Schepanski K, Banaschewski T, Neidhart M, Meyer-Lindenberg A, Tost H, Holz N, Schwarz E, Stringaris A, Christmann N, Janson K, Nees F, Neidhart M, Seefried B, Aden R, Andreassen OA, Westlye LT, van der Meer D, Fernández-Cabello S, Kjelkenes R, Ask H, Rapp M, Tschorn M, Böttger SJ, Marquand A, Bernas A, Novarino G, Slater M, Gallego J, Pastor Á, Feixas G, Eiroa-Orosa FJ, Nöthen MM, Forstner AJ, Claus I, Mathey C, Heilmann-Heimbach S, Hoffmann P, Miller A, Sommer P, Schmitt K, Wilbertz J, Patraskaki M, Jirsa V, Petkoski S, Athanasiadis A-P, Spanlang B, Pearmund C, Hese S, Renner P, Jia T, Chang X, Dai Y, Xia Y, Li Y, Zhang Y, Calhoun V, Thompson P, Clinton N, Desrivières S, Agunbiade K, Yu X, Zhang Z, Chen D, Young AH, Schwalber A, Köhler V, Stahl B, Ogoh G, Schikowski T, Brandlistuen R. 2025. Projecting the morbidity burden of mental and behavioral disorders associated with increasing humid heat in Shanghai. Nature Mental Health. 3(12), 1532–1544.","chicago":"Liang, Chen, Jiacan Yuan, Renhe Zhang, Xu Tang, Gunter Schumann, Esther Hitchen, Elli Polemiti, et al. “Projecting the Morbidity Burden of Mental and Behavioral Disorders Associated with Increasing Humid Heat in Shanghai.” <i>Nature Mental Health</i>. Springer Nature, 2025. <a href=\"https://doi.org/10.1038/s44220-025-00519-y\">https://doi.org/10.1038/s44220-025-00519-y</a>.","ieee":"C. Liang <i>et al.</i>, “Projecting the morbidity burden of mental and behavioral disorders associated with increasing humid heat in Shanghai,” <i>Nature Mental Health</i>, vol. 3, no. 12. Springer Nature, pp. 1532–1544, 2025.","apa":"Liang, C., Yuan, J., Zhang, R., Tang, X., Schumann, G., Hitchen, E., … Brandlistuen, R. (2025). Projecting the morbidity burden of mental and behavioral disorders associated with increasing humid heat in Shanghai. <i>Nature Mental Health</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s44220-025-00519-y\">https://doi.org/10.1038/s44220-025-00519-y</a>","mla":"Liang, Chen, et al. “Projecting the Morbidity Burden of Mental and Behavioral Disorders Associated with Increasing Humid Heat in Shanghai.” <i>Nature Mental Health</i>, vol. 3, no. 12, Springer Nature, 2025, pp. 1532–44, doi:<a href=\"https://doi.org/10.1038/s44220-025-00519-y\">10.1038/s44220-025-00519-y</a>."},"month":"12","doi":"10.1038/s44220-025-00519-y","article_type":"original","author":[{"first_name":"Chen","full_name":"Liang, Chen","last_name":"Liang"},{"first_name":"Jiacan","full_name":"Yuan, Jiacan","last_name":"Yuan"},{"first_name":"Renhe","last_name":"Zhang","full_name":"Zhang, Renhe"},{"first_name":"Xu","full_name":"Tang, Xu","last_name":"Tang"},{"first_name":"Gunter","last_name":"Schumann","full_name":"Schumann, Gunter"},{"first_name":"Esther","last_name":"Hitchen","full_name":"Hitchen, Esther"},{"full_name":"Polemiti, Elli","last_name":"Polemiti","first_name":"Elli"},{"first_name":"Emin","last_name":"Serin","full_name":"Serin, Emin"},{"last_name":"Kebir","full_name":"Kebir, Hedi","first_name":"Hedi"},{"last_name":"Lett","full_name":"Lett, Tristram A.","first_name":"Tristram A."},{"first_name":"Nilakshi","full_name":"Vaidya, Nilakshi","last_name":"Vaidya"},{"last_name":"Roy","full_name":"Roy, Jean-Charles","first_name":"Jean-Charles"},{"first_name":"Henrik","full_name":"Walter, Henrik","last_name":"Walter"},{"first_name":"Andreas","last_name":"Heinz","full_name":"Heinz, Andreas"},{"first_name":"Markus","full_name":"Ralser, Markus","last_name":"Ralser"},{"first_name":"Sven","full_name":"Twardziok, Sven","last_name":"Twardziok"},{"first_name":"Roland","last_name":"Eils","full_name":"Eils, Roland"},{"first_name":"Marcel","last_name":"Jentsch","full_name":"Jentsch, Marcel"},{"full_name":"Taron, Ulrike-Helene","last_name":"Taron","first_name":"Ulrike-Helene"},{"first_name":"Tatjana","last_name":"Schütz","full_name":"Schütz, Tatjana"},{"first_name":"Kerstin","last_name":"Schepanski","full_name":"Schepanski, Kerstin"},{"full_name":"Banaschewski, Tobias","last_name":"Banaschewski","first_name":"Tobias"},{"full_name":"Neidhart, Maja","last_name":"Neidhart","first_name":"Maja"},{"last_name":"Meyer-Lindenberg","full_name":"Meyer-Lindenberg, Andreas","first_name":"Andreas"},{"last_name":"Tost","full_name":"Tost, Heike","first_name":"Heike"},{"first_name":"Nathalie","full_name":"Holz, Nathalie","last_name":"Holz"},{"first_name":"Emanuel","full_name":"Schwarz, Emanuel","last_name":"Schwarz"},{"full_name":"Stringaris, Argyris","last_name":"Stringaris","first_name":"Argyris"},{"full_name":"Christmann, Nina","last_name":"Christmann","first_name":"Nina"},{"first_name":"Karina","last_name":"Janson","full_name":"Janson, Karina"},{"first_name":"Frauke","last_name":"Nees","full_name":"Nees, Frauke"},{"first_name":"Maja","full_name":"Neidhart, Maja","last_name":"Neidhart"},{"first_name":"Beke","last_name":"Seefried","full_name":"Seefried, Beke"},{"first_name":"Rieke","full_name":"Aden, Rieke","last_name":"Aden"},{"full_name":"Andreassen, Ole A.","last_name":"Andreassen","first_name":"Ole A."},{"last_name":"Westlye","full_name":"Westlye, Lars T.","first_name":"Lars T."},{"full_name":"van der Meer, Dennis","last_name":"van der Meer","first_name":"Dennis"},{"first_name":"Sara","last_name":"Fernández-Cabello","full_name":"Fernández-Cabello, Sara"},{"last_name":"Kjelkenes","full_name":"Kjelkenes, Rikka","first_name":"Rikka"},{"full_name":"Ask, Helga","last_name":"Ask","first_name":"Helga"},{"first_name":"Michael","last_name":"Rapp","full_name":"Rapp, Michael"},{"full_name":"Tschorn, Mira","last_name":"Tschorn","first_name":"Mira"},{"full_name":"Böttger, Sarah Jane","last_name":"Böttger","first_name":"Sarah Jane"},{"last_name":"Marquand","full_name":"Marquand, Andre","first_name":"Andre"},{"first_name":"Antoine","last_name":"Bernas","full_name":"Bernas, Antoine"},{"orcid":"0000-0002-7673-7178","id":"3E57A680-F248-11E8-B48F-1D18A9856A87","first_name":"Gaia","last_name":"Novarino","full_name":"Novarino, Gaia"},{"last_name":"Slater","full_name":"Slater, Mel","first_name":"Mel"},{"first_name":"Jaime","full_name":"Gallego, Jaime","last_name":"Gallego"},{"first_name":"Álvaro","full_name":"Pastor, Álvaro","last_name":"Pastor"},{"last_name":"Feixas","full_name":"Feixas, Guillem","first_name":"Guillem"},{"full_name":"Eiroa-Orosa, Francisco José","last_name":"Eiroa-Orosa","first_name":"Francisco José"},{"first_name":"Markus M.","last_name":"Nöthen","full_name":"Nöthen, Markus M."},{"first_name":"Andreas J.","last_name":"Forstner","full_name":"Forstner, Andreas J."},{"first_name":"Isabelle","full_name":"Claus, Isabelle","last_name":"Claus"},{"full_name":"Mathey, Carina","last_name":"Mathey","first_name":"Carina"},{"full_name":"Heilmann-Heimbach, Stefanie","last_name":"Heilmann-Heimbach","first_name":"Stefanie"},{"first_name":"Per","full_name":"Hoffmann, Per","last_name":"Hoffmann"},{"full_name":"Miller, Abigail","last_name":"Miller","first_name":"Abigail"},{"first_name":"Peter","last_name":"Sommer","full_name":"Sommer, Peter"},{"first_name":"Karen","last_name":"Schmitt","full_name":"Schmitt, Karen"},{"first_name":"Johannes","full_name":"Wilbertz, Johannes","last_name":"Wilbertz"},{"full_name":"Patraskaki, Myrto","last_name":"Patraskaki","first_name":"Myrto"},{"first_name":"Viktor","full_name":"Jirsa, Viktor","last_name":"Jirsa"},{"first_name":"Spase","last_name":"Petkoski","full_name":"Petkoski, Spase"},{"last_name":"Athanasiadis","full_name":"Athanasiadis, Anastasios-Polykarpos","first_name":"Anastasios-Polykarpos"},{"last_name":"Spanlang","full_name":"Spanlang, Bernhard","first_name":"Bernhard"},{"full_name":"Pearmund, Charlie","last_name":"Pearmund","first_name":"Charlie"},{"first_name":"Sören","last_name":"Hese","full_name":"Hese, Sören"},{"first_name":"Paul","last_name":"Renner","full_name":"Renner, Paul"},{"first_name":"Tianye","last_name":"Jia","full_name":"Jia, Tianye"},{"first_name":"Xiao","last_name":"Chang","full_name":"Chang, Xiao"},{"first_name":"Yuxiang","last_name":"Dai","full_name":"Dai, Yuxiang"},{"last_name":"Xia","full_name":"Xia, Yunman","first_name":"Yunman"},{"full_name":"Li, Yuzhu","last_name":"Li","first_name":"Yuzhu"},{"first_name":"Yanqing","full_name":"Zhang, Yanqing","last_name":"Zhang"},{"last_name":"Calhoun","full_name":"Calhoun, Vince","first_name":"Vince"},{"first_name":"Paul","last_name":"Thompson","full_name":"Thompson, Paul"},{"first_name":"Nicholas","last_name":"Clinton","full_name":"Clinton, Nicholas"},{"full_name":"Desrivières, Sylvane","last_name":"Desrivières","first_name":"Sylvane"},{"first_name":"Kofoworola","last_name":"Agunbiade","full_name":"Agunbiade, Kofoworola"},{"first_name":"Xinyang","last_name":"Yu","full_name":"Yu, Xinyang"},{"first_name":"Zuo","last_name":"Zhang","full_name":"Zhang, Zuo"},{"first_name":"Di","last_name":"Chen","full_name":"Chen, Di"},{"last_name":"Young","full_name":"Young, Allan H.","first_name":"Allan H."},{"first_name":"Ameli","last_name":"Schwalber","full_name":"Schwalber, Ameli"},{"full_name":"Köhler, Vanessa","last_name":"Köhler","first_name":"Vanessa"},{"last_name":"Stahl","full_name":"Stahl, Bernd","first_name":"Bernd"},{"first_name":"George","last_name":"Ogoh","full_name":"Ogoh, George"},{"first_name":"Tamara","last_name":"Schikowski","full_name":"Schikowski, Tamara"},{"first_name":"Ragnhild","last_name":"Brandlistuen","full_name":"Brandlistuen, Ragnhild"}],"date_published":"2025-12-01T00:00:00Z","date_updated":"2026-01-05T12:02:29Z","oa_version":"None"},{"type":"journal_article","title":"Reduced fitness under drought stress in F1 hybrids of Antirrhinum majus varieties with divergent flower colors","abstract":[{"text":"Premise: What maintains trait divergence in the face of gene flow? Two varieties of wild snapdragon (Antirrhinum majus) characterized by divergent flower color hybridize in their native range. Selection on flower color genes is indicated by sharp clines, but the selective agents have not been demonstrated. Although previous work has focused on pollinators, pigmentation genes can also contribute to abiotic stress tolerance. We hypothesized that pigmentation in A. majus mediates stress tolerance, which could contribute to hybrid zone maintenance through parental niche divergence or hybrid maladaptation. Specifically, we tested whether morphotype mediates drought tolerance in an experiment comparing magenta-flowered var. pseudomajus, yellow-flowered var. striatum, and their pink-flowered hybrid cross.\r\nMethods: We experimentally compared drought tolerance of each morphotype from allopatric crosses within and between varieties using three greenhouse treatments. Control plants were watered as needed, while drought-treated plants were watered half as often, either from the transplant stage (“early” drought), or from flowering onset (“late” drought).\r\nResults: Parental morphotypes responded identically to drought in fitness and most phenotypic traits. However, hybrids had lower survival (14%) under late drought stress than parental morphotypes (70%). All hybrids that flowered in the late drought treatment died, compared to ~20% of flowering parental morphotypes.\r\nConclusions: Hybrid maladaptation to abiotic stress could potentially contribute to flower color divergence in the face of gene flow in A. majus. Further research should test the relevance of our results to field conditions and explicitly probe the role of flower color genes in drought tolerance.","lang":"eng"}],"department":[{"_id":"NiBa"}],"related_material":{"link":[{"relation":"software","url":"https://github.com/Alex-Fuster/hybrids_drought"}]},"OA_type":"closed access","article_processing_charge":"No","quality_controlled":"1","_id":"20869","issue":"12","volume":112,"pmid":1,"year":"2025","ec_funded":1,"status":"public","intvolume":"       112","date_created":"2025-12-29T12:14:26Z","publication":"American Journal of Botany","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","acknowledgement":"Thank you to Doug Schemske and Nick Barton forcritically reviewing the manuscript, Beatriz Pablo Car-mona for assisting with data collection, Melinda Pickupand Eva Cereghetti for seedlings, and Louise Arathoon,Ksenia Khudiakova, Georg Rieckh, Daria Shiplina, andAnja Westram for help with experimental maintenance.We sincerely thank the Associate Editor Brenda Grewelland two anonymous reviewers for their thoughtfulcomments and suggestions, which substantially improved the clarity and quality of our manuscript. C.B. receivedfunding from the European Union's Horizon 2020 researchand innovation programme under the Marie Skłodowska‐Curie Grant Agreement No. 754411","citation":{"ama":"Fuster‐Calvo A, Jaworski CC, Ellis T, Baskett C. Reduced fitness under drought stress in F1 hybrids of Antirrhinum majus varieties with divergent flower colors. <i>American Journal of Botany</i>. 2025;112(12). doi:<a href=\"https://doi.org/10.1002/ajb2.70129\">10.1002/ajb2.70129</a>","chicago":"Fuster‐Calvo, Alexandre, Coline C. Jaworski, Thomas Ellis, and Carina Baskett. “Reduced Fitness under Drought Stress in F1 Hybrids of Antirrhinum Majus Varieties with Divergent Flower Colors.” <i>American Journal of Botany</i>. Wiley, 2025. <a href=\"https://doi.org/10.1002/ajb2.70129\">https://doi.org/10.1002/ajb2.70129</a>.","ista":"Fuster‐Calvo A, Jaworski CC, Ellis T, Baskett C. 2025. Reduced fitness under drought stress in F1 hybrids of Antirrhinum majus varieties with divergent flower colors. American Journal of Botany. 112(12), e70129.","short":"A. Fuster‐Calvo, C.C. Jaworski, T. Ellis, C. Baskett, American Journal of Botany 112 (2025).","ieee":"A. Fuster‐Calvo, C. C. Jaworski, T. Ellis, and C. Baskett, “Reduced fitness under drought stress in F1 hybrids of Antirrhinum majus varieties with divergent flower colors,” <i>American Journal of Botany</i>, vol. 112, no. 12. Wiley, 2025.","apa":"Fuster‐Calvo, A., Jaworski, C. C., Ellis, T., &#38; Baskett, C. (2025). Reduced fitness under drought stress in F1 hybrids of Antirrhinum majus varieties with divergent flower colors. <i>American Journal of Botany</i>. Wiley. <a href=\"https://doi.org/10.1002/ajb2.70129\">https://doi.org/10.1002/ajb2.70129</a>","mla":"Fuster‐Calvo, Alexandre, et al. “Reduced Fitness under Drought Stress in F1 Hybrids of Antirrhinum Majus Varieties with Divergent Flower Colors.” <i>American Journal of Botany</i>, vol. 112, no. 12, e70129, Wiley, 2025, doi:<a href=\"https://doi.org/10.1002/ajb2.70129\">10.1002/ajb2.70129</a>."},"publication_identifier":{"issn":["0002-9122"],"eissn":["1537-2197"]},"project":[{"_id":"260C2330-B435-11E9-9278-68D0E5697425","name":"ISTplus - Postdoctoral Fellowships","grant_number":"754411","call_identifier":"H2020"}],"day":"01","scopus_import":"1","language":[{"iso":"eng"}],"publisher":"Wiley","publication_status":"published","date_updated":"2026-01-05T11:56:22Z","oa_version":"None","date_published":"2025-12-01T00:00:00Z","external_id":{"pmid":["41327576 "]},"article_number":"e70129","doi":"10.1002/ajb2.70129","article_type":"original","month":"12","author":[{"first_name":"Alexandre","last_name":"Fuster‐Calvo","full_name":"Fuster‐Calvo, Alexandre"},{"last_name":"Jaworski","full_name":"Jaworski, Coline C.","first_name":"Coline C."},{"id":"3153D6D4-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8511-0254","last_name":"Ellis","full_name":"Ellis, Thomas","first_name":"Thomas"},{"orcid":"0000-0002-7354-8574","id":"3B4A7CE2-F248-11E8-B48F-1D18A9856A87","first_name":"Carina","full_name":"Baskett, Carina","last_name":"Baskett"}]},{"publication":"Transcriptomics in Atherosclerosis","type":"book_chapter","date_created":"2025-12-29T12:16:22Z","abstract":[{"text":"RNA sequencing (RNA-seq) methodologies have evolved rapidly, offering powerful tools to study gene expression, transcriptome dynamics, and molecular mechanisms in various biological contexts. However, the complexity of these approaches poses challenges in data interpretation, sensitivity, and applicability. This chapter provides a comprehensive overview of RNA-seq methodologies, highlighting their advantages, limitations, and applications, particularly in cardiovascular research. Bulk RNA sequencing enables high-throughput gene expression profiling but lacks the resolution to capture cellular heterogeneity and spatial context. Direct RNA sequencing preserves native RNA modifications, offering insights into post-transcriptional regulation, though it remains technically challenging. Single-cell RNA sequencing (scRNA-seq) and spatial transcriptomics (ST) bridge these gaps by resolving transcriptomic complexity at the cellular level and within tissue architecture, providing crucial insights into disease mechanisms such as atherosclerosis. By summarizing the strengths and limitations of these methodologies, this chapter aims to guide researchers in selecting the most suitable transcriptomic approach for their studies, ultimately advancing precision medicine and biomarker discovery in cardiovascular disease.","lang":"eng"}],"title":"Essentials of transcriptomic methods: Navigating through RNA sequencing and beyond","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","department":[{"_id":"Bio"}],"citation":{"mla":"Stopa, Victoria, et al. “Essentials of Transcriptomic Methods: Navigating through RNA Sequencing and Beyond.” <i>Transcriptomics in Atherosclerosis</i>, edited by Yvan Devaux and Miron Sopic, Elsevier, 2025, pp. 131–72, doi:<a href=\"https://doi.org/10.1016/b978-0-443-33064-3.00016-5\">10.1016/b978-0-443-33064-3.00016-5</a>.","ieee":"V. Stopa <i>et al.</i>, “Essentials of transcriptomic methods: Navigating through RNA sequencing and beyond,” in <i>Transcriptomics in Atherosclerosis</i>, Y. Devaux and M. Sopic, Eds. Elsevier, 2025, pp. 131–172.","short":"V. Stopa, M. Sopić, G. Li, J. Sluimer, J. Basílio, S.W. van der Laan, D.P. Kreil, Y. Devaux, B. Hochreiter, in:, Y. Devaux, M. Sopic (Eds.), Transcriptomics in Atherosclerosis, Elsevier, 2025, pp. 131–172.","ama":"Stopa V, Sopić M, Li G, et al. Essentials of transcriptomic methods: Navigating through RNA sequencing and beyond. In: Devaux Y, Sopic M, eds. <i>Transcriptomics in Atherosclerosis</i>. Elsevier; 2025:131-172. doi:<a href=\"https://doi.org/10.1016/b978-0-443-33064-3.00016-5\">10.1016/b978-0-443-33064-3.00016-5</a>","ista":"Stopa V, Sopić M, Li G, Sluimer J, Basílio J, van der Laan SW, Kreil DP, Devaux Y, Hochreiter B. 2025.Essentials of transcriptomic methods: Navigating through RNA sequencing and beyond. In: Transcriptomics in Atherosclerosis. , 131–172.","chicago":"Stopa, Victoria, Miron Sopić, Guanliang Li, Judith Sluimer, José Basílio, Sander W. van der Laan, David P. Kreil, Yvan Devaux, and Bernhard Hochreiter. “Essentials of Transcriptomic Methods: Navigating through RNA Sequencing and Beyond.” In <i>Transcriptomics in Atherosclerosis</i>, edited by Yvan Devaux and Miron Sopic, 131–72. Elsevier, 2025. <a href=\"https://doi.org/10.1016/b978-0-443-33064-3.00016-5\">https://doi.org/10.1016/b978-0-443-33064-3.00016-5</a>.","apa":"Stopa, V., Sopić, M., Li, G., Sluimer, J., Basílio, J., van der Laan, S. W., … Hochreiter, B. (2025). Essentials of transcriptomic methods: Navigating through RNA sequencing and beyond. In Y. Devaux &#38; M. Sopic (Eds.), <i>Transcriptomics in Atherosclerosis</i> (pp. 131–172). Elsevier. <a href=\"https://doi.org/10.1016/b978-0-443-33064-3.00016-5\">https://doi.org/10.1016/b978-0-443-33064-3.00016-5</a>"},"publication_identifier":{"isbn":["9780443330643"]},"OA_type":"closed access","language":[{"iso":"eng"}],"scopus_import":"1","article_processing_charge":"No","day":"24","_id":"20870","publisher":"Elsevier","quality_controlled":"1","publication_status":"published","page":"131-172","oa_version":"None","date_updated":"2026-01-05T11:49:54Z","date_published":"2025-10-24T00:00:00Z","year":"2025","doi":"10.1016/b978-0-443-33064-3.00016-5","month":"10","editor":[{"first_name":"Yvan","full_name":"Devaux, Yvan","last_name":"Devaux"},{"full_name":"Sopic, Miron","last_name":"Sopic","first_name":"Miron"}],"status":"public","author":[{"last_name":"Stopa","full_name":"Stopa, Victoria","first_name":"Victoria"},{"full_name":"Sopić, Miron","last_name":"Sopić","first_name":"Miron"},{"full_name":"Li, Guanliang","last_name":"Li","first_name":"Guanliang"},{"first_name":"Judith","last_name":"Sluimer","full_name":"Sluimer, Judith"},{"first_name":"José","last_name":"Basílio","full_name":"Basílio, José"},{"full_name":"van der Laan, Sander W.","last_name":"van der Laan","first_name":"Sander W."},{"first_name":"David P.","full_name":"Kreil, David P.","last_name":"Kreil"},{"last_name":"Devaux","full_name":"Devaux, Yvan","first_name":"Yvan"},{"first_name":"Bernhard","last_name":"Hochreiter","full_name":"Hochreiter, Bernhard","id":"e6cab3de-17f6-11ed-9210-c1e42e045e9d"}]},{"status":"public","intvolume":"        21","year":"2025","pmid":1,"issue":"24","volume":21,"_id":"20926","quality_controlled":"1","page":"12709-12724","OA_type":"green","article_processing_charge":"No","department":[{"_id":"GradSch"},{"_id":"BiCh"}],"type":"journal_article","abstract":[{"text":"Most current machine learning interatomic potentials (MLIPs) rely on short-range approximations, without explicit treatment of long-range electrostatics. To address this, we recently developed the Latent Ewald Summation (LES) method, which infers electrostatic interactions, polarization, and Born effective charges (BECs), just by learning from energy and force training data. Here, we present LES as a standalone library, compatible with any short-range MLIP, and demonstrate its integration with methods such as MACE, NequIP, Allegro, CACE, CHGNet, and UMA. We benchmark LES-enhanced models on distinct systems, including bulk water, polar dipeptides, and gold dimer adsorption on defective substrates, and show that LES not only captures correct electrostatics but also improves accuracy. Additionally, we scale LES to large and chemically diverse data by training MACELES-OFF on the SPICE set containing molecules and clusters, making a universal MLIP with electrostatics for organic systems, including biomolecules. MACELES-OFF is more accurate than its short-range counterpart (MACE-OFF) trained on the same data set, predicts dipoles and BECs reliably, and has better descriptions of bulk liquids. By enabling efficient long-range electrostatics without directly training on electrical properties, LES paves the way for electrostatic foundation MLIPs.","lang":"eng"}],"title":"A universal augmentation framework for long-range electrostatics in machine learning interatomic potentials","author":[{"last_name":"Kim","full_name":"Kim, Dongjin","first_name":"Dongjin"},{"id":"8dff9c62-32b0-11ee-9fa8-fc73025e10f3","first_name":"Xiaoyu","full_name":"Wang, Xiaoyu","last_name":"Wang"},{"full_name":"Vargas, Santiago","last_name":"Vargas","first_name":"Santiago"},{"first_name":"Peichen","last_name":"Zhong","full_name":"Zhong, Peichen"},{"full_name":"King, Daniel S.","last_name":"King","first_name":"Daniel S."},{"last_name":"Inizan","full_name":"Inizan, Theo Jaffrelot","first_name":"Theo Jaffrelot"},{"orcid":"0000-0002-3584-9632","id":"cbe3cda4-d82c-11eb-8dc7-8ff94289fcc9","first_name":"Bingqing","full_name":"Cheng, Bingqing","last_name":"Cheng"}],"article_type":"original","OA_place":"repository","doi":"10.1021/acs.jctc.5c01400","month":"12","corr_author":"1","oa":1,"main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2507.14302","open_access":"1"}],"external_id":{"arxiv":["2507.14302"],"pmid":["41368735 "]},"oa_version":"Preprint","date_updated":"2026-01-05T11:34:21Z","date_published":"2025-12-10T00:00:00Z","publisher":"American Chemical Society","publication_status":"published","publication_identifier":{"issn":["1549-9618"],"eissn":["1549-9626"]},"arxiv":1,"scopus_import":"1","language":[{"iso":"eng"}],"day":"10","citation":{"apa":"Kim, D., Wang, X., Vargas, S., Zhong, P., King, D. S., Inizan, T. J., &#38; Cheng, B. (2025). A universal augmentation framework for long-range electrostatics in machine learning interatomic potentials. <i>Journal of Chemical Theory and Computation</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/acs.jctc.5c01400\">https://doi.org/10.1021/acs.jctc.5c01400</a>","ieee":"D. Kim <i>et al.</i>, “A universal augmentation framework for long-range electrostatics in machine learning interatomic potentials,” <i>Journal of Chemical Theory and Computation</i>, vol. 21, no. 24. American Chemical Society, pp. 12709–12724, 2025.","ista":"Kim D, Wang X, Vargas S, Zhong P, King DS, Inizan TJ, Cheng B. 2025. A universal augmentation framework for long-range electrostatics in machine learning interatomic potentials. Journal of Chemical Theory and Computation. 21(24), 12709–12724.","ama":"Kim D, Wang X, Vargas S, et al. A universal augmentation framework for long-range electrostatics in machine learning interatomic potentials. <i>Journal of Chemical Theory and Computation</i>. 2025;21(24):12709-12724. doi:<a href=\"https://doi.org/10.1021/acs.jctc.5c01400\">10.1021/acs.jctc.5c01400</a>","short":"D. Kim, X. Wang, S. Vargas, P. Zhong, D.S. King, T.J. Inizan, B. Cheng, Journal of Chemical Theory and Computation 21 (2025) 12709–12724.","chicago":"Kim, Dongjin, Xiaoyu Wang, Santiago Vargas, Peichen Zhong, Daniel S. King, Theo Jaffrelot Inizan, and Bingqing Cheng. “A Universal Augmentation Framework for Long-Range Electrostatics in Machine Learning Interatomic Potentials.” <i>Journal of Chemical Theory and Computation</i>. American Chemical Society, 2025. <a href=\"https://doi.org/10.1021/acs.jctc.5c01400\">https://doi.org/10.1021/acs.jctc.5c01400</a>.","mla":"Kim, Dongjin, et al. “A Universal Augmentation Framework for Long-Range Electrostatics in Machine Learning Interatomic Potentials.” <i>Journal of Chemical Theory and Computation</i>, vol. 21, no. 24, American Chemical Society, 2025, pp. 12709–24, doi:<a href=\"https://doi.org/10.1021/acs.jctc.5c01400\">10.1021/acs.jctc.5c01400</a>."},"publication":"Journal of Chemical Theory and Computation","date_created":"2026-01-04T23:01:33Z","acknowledgement":"Research reported in this publication was supported by the National Institute Of General Medical Sciences of the National Institutes of Health under Award Number R35GM159986. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health. D.K. and B.C. acknowledge funding from Toyota Research Institute Synthesis Advanced Research Challenge. T.J.I., D.S.K. and P.Z. acknowledge funding from BIDMaP Postdoctoral Fellowship. T.J.I. used resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy Office of Science User Facility using NERSC award DOEERCAP0031751 ′GenAI@NERSC’. The authors thank Bowen Deng for valuable discussions on MatGL implementation, and thank Gabor Csanyi for stimulating discussions.","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"citation":{"apa":"Khatoon, B., Chaudhary, V. K., Kamil, S., Hasan, S. U., &#38; Alam, M. S. (2025). Enhanced mass transfer in microgeometry using pulsating velocity inputs: Hydrodynamic analysis and numerical simulation. <i>Physics of Fluids</i>. AIP Publishing. <a href=\"https://doi.org/10.1063/5.0303132\">https://doi.org/10.1063/5.0303132</a>","ama":"Khatoon B, Chaudhary VK, Kamil S, Hasan SU, Alam MS. Enhanced mass transfer in microgeometry using pulsating velocity inputs: Hydrodynamic analysis and numerical simulation. <i>Physics of Fluids</i>. 2025;37(12). doi:<a href=\"https://doi.org/10.1063/5.0303132\">10.1063/5.0303132</a>","ista":"Khatoon B, Chaudhary VK, Kamil S, Hasan SU, Alam MS. 2025. Enhanced mass transfer in microgeometry using pulsating velocity inputs: Hydrodynamic analysis and numerical simulation. Physics of Fluids. 37(12), 122012.","chicago":"Khatoon, Bushra, Vikas K. Chaudhary, Shoaib Kamil, Shabih Ul Hasan, and M. Siraj Alam. “Enhanced Mass Transfer in Microgeometry Using Pulsating Velocity Inputs: Hydrodynamic Analysis and Numerical Simulation.” <i>Physics of Fluids</i>. AIP Publishing, 2025. <a href=\"https://doi.org/10.1063/5.0303132\">https://doi.org/10.1063/5.0303132</a>.","short":"B. Khatoon, V.K. Chaudhary, S. Kamil, S.U. Hasan, M.S. Alam, Physics of Fluids 37 (2025).","ieee":"B. Khatoon, V. K. Chaudhary, S. Kamil, S. U. Hasan, and M. S. Alam, “Enhanced mass transfer in microgeometry using pulsating velocity inputs: Hydrodynamic analysis and numerical simulation,” <i>Physics of Fluids</i>, vol. 37, no. 12. AIP Publishing, 2025.","mla":"Khatoon, Bushra, et al. “Enhanced Mass Transfer in Microgeometry Using Pulsating Velocity Inputs: Hydrodynamic Analysis and Numerical Simulation.” <i>Physics of Fluids</i>, vol. 37, no. 12, 122012, AIP Publishing, 2025, doi:<a href=\"https://doi.org/10.1063/5.0303132\">10.1063/5.0303132</a>."},"acknowledgement":"The authors are thankful for the financial support provided by the Ministry of Education, India, and MNNIT Allahabad, as well as for the necessary equipment, computing facilities, and overall support to carry out this study.","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication":"Physics of Fluids","date_created":"2026-01-04T23:01:34Z","publication_status":"published","publisher":"AIP Publishing","scopus_import":"1","language":[{"iso":"eng"}],"day":"01","publication_identifier":{"eissn":["1089-7666"],"issn":["1070-6631"]},"article_number":"122012","date_published":"2025-12-01T00:00:00Z","oa_version":"None","date_updated":"2026-01-05T10:54:15Z","author":[{"last_name":"Khatoon","full_name":"Khatoon, Bushra","first_name":"Bushra"},{"first_name":"Vikas K.","full_name":"Chaudhary, Vikas K.","last_name":"Chaudhary"},{"id":"185a19af-dc7d-11ea-9b2f-8eb2201959e9","first_name":"Shoaib","last_name":"Kamil","full_name":"Kamil, Shoaib"},{"first_name":"Shabih Ul","full_name":"Hasan, Shabih Ul","last_name":"Hasan"},{"first_name":"M. Siraj","last_name":"Alam","full_name":"Alam, M. Siraj"}],"month":"12","article_type":"original","doi":"10.1063/5.0303132","department":[{"_id":"BjHo"}],"abstract":[{"text":"The current work focuses on the performance of hydrodynamics and mass transfer in a microchannel. A hydrodynamic model is developed for a gas–liquid (CO2–water) system and slug flow pattern. For the first time in literature, a concept of pulsating velocity input is introduced in an enhanced cross-T-junction microchannel to study the mass transfer using the physical absorption mechanism in ANSYS FLUENT R2 2024. The mass transfer model is associated with the hydrodynamic model and some user-defined functions in FLUENT. This work demonstrates that incorporating obstructions and applying trapezoidal and sinusoidal wave inputs improve the CO2 absorption rate. The obtained data are further compared with the plain T-junction microchannel in terms of mass transfer coefficient. Solubility of CO2 in three different solvents (ethyl alcohol, water, and ethylene glycol) has been revealed in an enhanced cross T-junction microchannel at two different temperatures, i.e., 298.15 and 303.15 K. The numerical simulations illustrate that an increase in temperature has an adverse effect on the mass transfer rate.","lang":"eng"}],"title":"Enhanced mass transfer in microgeometry using pulsating velocity inputs: Hydrodynamic analysis and numerical simulation","type":"journal_article","_id":"20928","quality_controlled":"1","article_processing_charge":"No","OA_type":"closed access","volume":37,"issue":"12","intvolume":"        37","status":"public","year":"2025"},{"external_id":{"pmid":["41381452"]},"article_number":"11355","date_published":"2025-12-11T00:00:00Z","date_updated":"2026-05-20T08:10:18Z","oa_version":"Published Version","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"author":[{"orcid":"0000-0001-8945-6992","id":"C407B586-6052-11E9-B3AE-7006E6697425","first_name":"Murat","last_name":"Artan","full_name":"Artan, Murat"},{"first_name":"Hanna","last_name":"Schön","full_name":"Schön, Hanna","id":"C8E17EDC-D7AA-11E9-B7B7-45ECE5697425"},{"first_name":"Mario","full_name":"De Bono, Mario","last_name":"De Bono","orcid":"0000-0001-8347-0443","id":"4E3FF80E-F248-11E8-B48F-1D18A9856A87"}],"DOAJ_listed":"1","license":"https://creativecommons.org/licenses/by/4.0/","oa":1,"ddc":["570"],"month":"12","PlanS_conform":"1","corr_author":"1","doi":"10.1038/s41467-025-66409-0","article_type":"original","OA_place":"publisher","citation":{"ista":"Artan M, Schön H, de Bono M. 2025. Proximity labeling of DAF-16 FOXO highlights aging regulatory proteins. Nature Communications. 16, 11355.","ama":"Artan M, Schön H, de Bono M. Proximity labeling of DAF-16 FOXO highlights aging regulatory proteins. <i>Nature Communications</i>. 2025;16. doi:<a href=\"https://doi.org/10.1038/s41467-025-66409-0\">10.1038/s41467-025-66409-0</a>","short":"M. Artan, H. Schön, M. de Bono, Nature Communications 16 (2025).","chicago":"Artan, Murat, Hanna Schön, and Mario de Bono. “Proximity Labeling of DAF-16 FOXO Highlights Aging Regulatory Proteins.” <i>Nature Communications</i>. Springer Nature, 2025. <a href=\"https://doi.org/10.1038/s41467-025-66409-0\">https://doi.org/10.1038/s41467-025-66409-0</a>.","ieee":"M. Artan, H. Schön, and M. de Bono, “Proximity labeling of DAF-16 FOXO highlights aging regulatory proteins,” <i>Nature Communications</i>, vol. 16. Springer Nature, 2025.","apa":"Artan, M., Schön, H., &#38; de Bono, M. (2025). Proximity labeling of DAF-16 FOXO highlights aging regulatory proteins. <i>Nature Communications</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41467-025-66409-0\">https://doi.org/10.1038/s41467-025-66409-0</a>","mla":"Artan, Murat, et al. “Proximity Labeling of DAF-16 FOXO Highlights Aging Regulatory Proteins.” <i>Nature Communications</i>, vol. 16, 11355, Springer Nature, 2025, doi:<a href=\"https://doi.org/10.1038/s41467-025-66409-0\">10.1038/s41467-025-66409-0</a>."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","acknowledgement":"We thank de Bono lab members for helpful comments on the manuscript, and the Mass Spec Facility at the Max Perutz Labs, notably WeiQiang Chen and Markus Hartl, for invaluable discussions and comments on mass spec analyses of worm samples. All LC-MS/MS analyses were performed on instruments of the Vienna BioCenter Core Facilities (VBCF). Microscopy was supported by the Scientific Services Units (SSU) of ISTA through resources provided by the Imaging & Optics Facility (IOF). We are grateful to Dr. Geraldine Seydoux (Johns Hopkins University) for worm strains and plasmids, and Dr. Seung-Jae V. Lee (KAIST) for RNAi clones. We are grateful to Ekaterina Lashmanova for designing the daf-16::TbID::mNG::3xFLAG knock-in construct and for her outstanding support in the lab. This work was supported by a Wellcome Investigator Award (209504/A/17/Z) to MdB and an ISTplus Fellowship to MA (Marie Sklodowska-Curie agreement No 754411).","date_created":"2026-01-04T23:01:34Z","publication":"Nature Communications","publication_status":"published","publisher":"Springer Nature","project":[{"grant_number":"754411","_id":"260C2330-B435-11E9-9278-68D0E5697425","name":"ISTplus - Postdoctoral Fellowships","call_identifier":"H2020"},{"grant_number":"209504/A/17/Z","name":"Molecular mechanisms of neural circuit function","_id":"23870BE8-32DE-11EA-91FC-C7463DDC885E"}],"day":"11","language":[{"iso":"eng"}],"scopus_import":"1","publication_identifier":{"eissn":["2041-1723"]},"pmid":1,"file_date_updated":"2026-01-05T10:58:28Z","has_accepted_license":"1","volume":16,"file":[{"content_type":"application/pdf","date_created":"2026-01-05T10:58:28Z","date_updated":"2026-01-05T10:58:28Z","creator":"dernst","relation":"main_file","file_name":"2025_NatureComm_Artan.pdf","file_id":"20941","file_size":1642352,"success":1,"checksum":"748e2e003b878b85b6048d51621d6aae","access_level":"open_access"}],"intvolume":"        16","status":"public","ec_funded":1,"APC_amount":"7068 EUR","year":"2025","department":[{"_id":"MaDe"}],"title":"Proximity labeling of DAF-16 FOXO highlights aging regulatory proteins","abstract":[{"text":"Insulin/insulin-like growth factor signaling inhibits FOXO transcription factors to control development, homeostasis, and aging. Here, we use proximity labeling to identify proteins interacting with the C. elegans FOXO DAF-16. We show that in well-fed, unstressed animals harboring active insulin signaling, DAF-16 forms a complex with the PAR-1/MARK serine/threonine kinase, a key regulator of cell polarity. PAR-1 inhibits DAF-16 accumulation and promotes DAF-16 phosphorylation at S249, at a conserved motif that PAR-1/human MARK2 phosphorylates in vitro. DAF-2 insulin-like receptor signaling stimulates DAF-16 S249 phosphorylation, suggesting DAF-2 activates PAR-1. DAF-2 also promotes PAR-1 expression by inhibiting DAF-16. PAR-1 knockdown, or DAF-16 S249A, prolong lifespan, whereas phosphomimetic DAF-16 S249D suppresses the longevity of daf-2 mutants. At low insulin signaling, DAF-16 proximity labeling highlights transcription factors, chromatin regulators, and DNA repair proteins. One interactor, the zinc finger/homeobox protein ZFH-2/ZFHX3, forms a complex with DAF-16 and prolongs lifespan. Our work provides entry points for hypothesis-driven studies of FOXO function and longevity.","lang":"eng"}],"type":"journal_article","quality_controlled":"1","_id":"20929","acknowledged_ssus":[{"_id":"Bio"}],"article_processing_charge":"Yes","OA_type":"gold"},{"acknowledgement":"We thank the referee for their suggestions and comments, which helped us improve the quality and clarity of the paper. JLGM and EV acknowledge the support from the Spanish Ministry of Science and Innovation/State Agency of Research (MCIN/AEI) under the grant PID2021-127289-NB-I00. ST acknowledges the funding from the European Union’s Horizon 2020 research and innovation program under the Marie Skłodowska-Curie grant agreement No. 101034413. AJM acknowledges support from the Swedish National Space Agency (Career Grant 2023-00146) and from the Swedish Research Council (Project Grant 2022-04043). JLGM also sincerely thanks AMP for his careful final reading of this manuscript. This work has made use of data from the European Space Agency (ESA) mission Gaia (https://www.cosmos.esa.int/gaia), processed by the Gaia Data Processing and Analysis Consortium (DPAC). Funding for the DPAC has been provided by national institutions, in particular the institutions participating in the Gaia Multilateral Agreement. We acknowledge the use of the public data products from RAVE (https://www.rave-survey.org), GALAH (https://galah-survey.org), APOGEE ((https://www.sdss.org) and LAMOST (http://www.lamost.org) surveys. This research has also made use of the SIMBAD database and the VizieR catalogue access tool, operated at CDS, Strasbourg, France, as well as the NASA Astrophysics Data System Bibliographic Services and the arXiv pre-print server operated by Cornell University. Computational analyses in this work relied extensively on the NumPy and SciPy libraries for numerical computing, matplotlib and seaborn for data visualization, and the Gala package for Galactic dynamics. This work also made use of Astropy, a community-developed core PYTHON package and an ecosystem of tools and resources for astronomy. We thank the developers and maintainers of these open-source resources for their invaluable contributions to the astronomical community.","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication":"Astronomy & Astrophysics","date_created":"2026-01-04T23:01:34Z","citation":{"apa":"Gragera-Más, J. L., Torres Rodriguez, S., Mustill, A. J., &#38; Villaver, E. (2025). A kinematic history of stellar encounters with Beta Pictoris. <i>Astronomy &#38; Astrophysics</i>. EDP Sciences. <a href=\"https://doi.org/10.1051/0004-6361/202555940\">https://doi.org/10.1051/0004-6361/202555940</a>","ieee":"J. L. Gragera-Más, S. Torres Rodriguez, A. J. Mustill, and E. Villaver, “A kinematic history of stellar encounters with Beta Pictoris,” <i>Astronomy &#38; Astrophysics</i>, vol. 704. EDP Sciences, 2025.","ista":"Gragera-Más JL, Torres Rodriguez S, Mustill AJ, Villaver E. 2025. A kinematic history of stellar encounters with Beta Pictoris. Astronomy &#38; Astrophysics. 704, A237.","short":"J.L. Gragera-Más, S. Torres Rodriguez, A.J. Mustill, E. Villaver, Astronomy &#38; Astrophysics 704 (2025).","chicago":"Gragera-Más, J. L., Santiago Torres Rodriguez, A. J. Mustill, and E. Villaver. “A Kinematic History of Stellar Encounters with Beta Pictoris.” <i>Astronomy &#38; Astrophysics</i>. EDP Sciences, 2025. <a href=\"https://doi.org/10.1051/0004-6361/202555940\">https://doi.org/10.1051/0004-6361/202555940</a>.","ama":"Gragera-Más JL, Torres Rodriguez S, Mustill AJ, Villaver E. A kinematic history of stellar encounters with Beta Pictoris. <i>Astronomy &#38; Astrophysics</i>. 2025;704. doi:<a href=\"https://doi.org/10.1051/0004-6361/202555940\">10.1051/0004-6361/202555940</a>","mla":"Gragera-Más, J. L., et al. “A Kinematic History of Stellar Encounters with Beta Pictoris.” <i>Astronomy &#38; Astrophysics</i>, vol. 704, A237, EDP Sciences, 2025, doi:<a href=\"https://doi.org/10.1051/0004-6361/202555940\">10.1051/0004-6361/202555940</a>."},"scopus_import":"1","language":[{"iso":"eng"}],"day":"01","project":[{"call_identifier":"H2020","grant_number":"101034413","name":"IST-BRIDGE: International postdoctoral program","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c"}],"publication_identifier":{"issn":["0004-6361"],"eissn":["1432-0746"]},"arxiv":1,"publisher":"EDP Sciences","publication_status":"published","date_published":"2025-12-01T00:00:00Z","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"oa_version":"Published Version","date_updated":"2026-02-16T12:15:07Z","article_number":"A237","external_id":{"arxiv":["2510.02509"]},"PlanS_conform":"1","month":"12","ddc":["520"],"oa":1,"article_type":"original","OA_place":"publisher","doi":"10.1051/0004-6361/202555940","DOAJ_listed":"1","author":[{"last_name":"Gragera-Más","full_name":"Gragera-Más, J. L.","first_name":"J. L."},{"full_name":"Torres Rodriguez, Santiago","last_name":"Torres Rodriguez","first_name":"Santiago","id":"a8df4360-4328-11ee-8f1a-e502d0c83fc2","orcid":"0000-0002-3150-8988"},{"first_name":"A. J.","full_name":"Mustill, A. J.","last_name":"Mustill"},{"full_name":"Villaver, E.","last_name":"Villaver","first_name":"E."}],"abstract":[{"lang":"eng","text":"Context. Beta Pictoris is an A-type star that hosts a complex planetary system with two massive gas giants and a prominent debris disc. Variable absorption lines in its stellar spectrum have been interpreted as signatures of exocomets – comet-like bodies transiting the star. Stellar flybys can gravitationally perturb objects in the outer comet reservoir, altering their orbits and potentially injecting them into the inner system, thereby triggering exocomet showers.\r\nAims. We assessed the contribution of stellar flybys to the observed exocomet activity by reconstructing the stellar encounter history of β Pictoris in the past and future.\r\nMethods. We used Gaia DR3 data, supplemented with radial velocities from complementary spectroscopic surveys, to compile a catalogue of stars currently within 80 pc of β Pictoris. Their orbits were integrated backwards and forwards in time in an axisymmetric Galactic potential (via the GALA package) to identify encounters within 2 pc of the system.\r\nResults. We identified 99 416 stars currently within 80 pc of β Pictoris with resolved kinematics. Among these, 49 stars (including the eight components of five binaries) encounter β Pictoris within 2 pc between –1.5 Myr and +2 Myr. For four of the binaries, the centre-of-mass trajectories also pass within 2 pc. We estimated the sample to be more than 60% complete within 0.5 Myr of today.\r\nConclusions. Despite β Pictoris being the eponym of its famous moving group, none of the identified encounters involved its moving group members; all are unrelated field stars. We found no encounter capable of shaping the observed disc structures, although stellar flybys may contribute to the long-term evolution of an Oort Cloud-like structure. Our catalogue constitutes the most complete reconstruction of the β Pictoris encounter history to date and provides a robust foundation for future dynamical simulations."}],"title":"A kinematic history of stellar encounters with Beta Pictoris","type":"journal_article","department":[{"_id":"LiBu"}],"article_processing_charge":"No","OA_type":"diamond","_id":"20930","quality_controlled":"1","has_accepted_license":"1","volume":704,"file_date_updated":"2026-01-05T11:06:16Z","ec_funded":1,"year":"2025","intvolume":"       704","status":"public","file":[{"file_name":"2025_AstronomyAstrophysics_GrageraMas.pdf","relation":"main_file","date_created":"2026-01-05T11:06:16Z","creator":"dernst","date_updated":"2026-01-05T11:06:16Z","content_type":"application/pdf","file_size":11021467,"file_id":"20942","access_level":"open_access","checksum":"2fb4d5a1603043aa7931a31f2c180877","success":1}]},{"publication_status":"published","publisher":"EDP Sciences","day":"01","scopus_import":"1","language":[{"iso":"eng"}],"arxiv":1,"publication_identifier":{"eissn":["1432-0746"],"issn":["0004-6361"]},"citation":{"mla":"Liu, Y., et al. “A Lyman Continuum Analysis of ∼100 Galaxies at z Spec∼ 3 in the Abell 2744 Cluster Field.” <i>Astronomy &#38; Astrophysics</i>, vol. 704, A328, EDP Sciences, 2025, doi:<a href=\"https://doi.org/10.1051/0004-6361/202556410\">10.1051/0004-6361/202556410</a>.","ista":"Liu Y, Mascia S, Pentericci L, Watson P, Alavi A, Bergamini P, Bradač M, Calabrò A, Glazebrook K, Henry A, Llerena M, Merlin E, Metha B, Nanayakkara T, Napolitano L, Roy N, Siana B, Vanzella E, Vulcani B, Wang X. 2025. A Lyman continuum analysis of ∼100 galaxies at z spec∼ 3 in the Abell 2744 cluster field. Astronomy &#38; Astrophysics. 704, A328.","chicago":"Liu, Y., Sara Mascia, L. Pentericci, P. Watson, A. Alavi, P. Bergamini, M. Bradač, et al. “A Lyman Continuum Analysis of ∼100 Galaxies at z Spec∼ 3 in the Abell 2744 Cluster Field.” <i>Astronomy &#38; Astrophysics</i>. EDP Sciences, 2025. <a href=\"https://doi.org/10.1051/0004-6361/202556410\">https://doi.org/10.1051/0004-6361/202556410</a>.","ama":"Liu Y, Mascia S, Pentericci L, et al. A Lyman continuum analysis of ∼100 galaxies at z spec∼ 3 in the Abell 2744 cluster field. <i>Astronomy &#38; Astrophysics</i>. 2025;704. doi:<a href=\"https://doi.org/10.1051/0004-6361/202556410\">10.1051/0004-6361/202556410</a>","short":"Y. Liu, S. Mascia, L. Pentericci, P. Watson, A. Alavi, P. Bergamini, M. Bradač, A. Calabrò, K. Glazebrook, A. Henry, M. Llerena, E. Merlin, B. Metha, T. Nanayakkara, L. Napolitano, N. Roy, B. Siana, E. Vanzella, B. Vulcani, X. Wang, Astronomy &#38; Astrophysics 704 (2025).","ieee":"Y. Liu <i>et al.</i>, “A Lyman continuum analysis of ∼100 galaxies at z spec∼ 3 in the Abell 2744 cluster field,” <i>Astronomy &#38; Astrophysics</i>, vol. 704. EDP Sciences, 2025.","apa":"Liu, Y., Mascia, S., Pentericci, L., Watson, P., Alavi, A., Bergamini, P., … Wang, X. (2025). A Lyman continuum analysis of ∼100 galaxies at z spec∼ 3 in the Abell 2744 cluster field. <i>Astronomy &#38; Astrophysics</i>. EDP Sciences. <a href=\"https://doi.org/10.1051/0004-6361/202556410\">https://doi.org/10.1051/0004-6361/202556410</a>"},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","acknowledgement":"We acknowledge support from the National Science Foundation of China – 12225301, INAF Large grant “Spectroscopic survey with JWST” jand from PRIN 2022 MUR project 2022CB3PJ3 – First Light And Galaxy aSsembly (FLAGS) funded by the European Union – Next Generation EU, and Postgraduate Scholarship Program under the grant of China Scholarship Council. P.W. and B.V. acknowledge support from the INAF Mini Grant ‘1.05.24.07.01 RSN1: Spatially Resolved Near-IR Emission of Intermediate-Redshift Jellyfish Galaxies’ (PI Watson). We acknowledge A. Acebron, C. Grillo, and P. Rosati for their fundamental contribution to the strong lensing analysis and results. We also extend our gratitude to the JWST and HST teams for their efforts in designing, building, and operating these transformative missions.","date_created":"2026-01-04T23:01:35Z","publication":"Astronomy & Astrophysics","author":[{"last_name":"Liu","full_name":"Liu, Y.","first_name":"Y."},{"full_name":"Mascia, Sara","last_name":"Mascia","first_name":"Sara","id":"edaf889c-c7cd-11ef-ab1b-bb28c431bd29"},{"full_name":"Pentericci, L.","last_name":"Pentericci","first_name":"L."},{"first_name":"P.","last_name":"Watson","full_name":"Watson, P."},{"last_name":"Alavi","full_name":"Alavi, A.","first_name":"A."},{"first_name":"P.","full_name":"Bergamini, P.","last_name":"Bergamini"},{"first_name":"M.","full_name":"Bradač, M.","last_name":"Bradač"},{"full_name":"Calabrò, A.","last_name":"Calabrò","first_name":"A."},{"full_name":"Glazebrook, K.","last_name":"Glazebrook","first_name":"K."},{"full_name":"Henry, A.","last_name":"Henry","first_name":"A."},{"first_name":"M.","full_name":"Llerena, M.","last_name":"Llerena"},{"last_name":"Merlin","full_name":"Merlin, E.","first_name":"E."},{"last_name":"Metha","full_name":"Metha, B.","first_name":"B."},{"last_name":"Nanayakkara","full_name":"Nanayakkara, T.","first_name":"T."},{"first_name":"L.","full_name":"Napolitano, L.","last_name":"Napolitano"},{"first_name":"N.","last_name":"Roy","full_name":"Roy, N."},{"last_name":"Siana","full_name":"Siana, B.","first_name":"B."},{"full_name":"Vanzella, E.","last_name":"Vanzella","first_name":"E."},{"first_name":"B.","full_name":"Vulcani, B.","last_name":"Vulcani"},{"last_name":"Wang","full_name":"Wang, X.","first_name":"X."}],"DOAJ_listed":"1","oa":1,"ddc":["520"],"month":"12","PlanS_conform":"1","doi":"10.1051/0004-6361/202556410","article_type":"original","OA_place":"publisher","external_id":{"arxiv":["2507.11045"]},"article_number":"A328","date_published":"2025-12-01T00:00:00Z","date_updated":"2026-02-16T12:14:52Z","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"oa_version":"Published Version","quality_controlled":"1","_id":"20932","article_processing_charge":"No","OA_type":"diamond","department":[{"_id":"JoMa"}],"title":"A Lyman continuum analysis of ∼100 galaxies at z spec∼ 3 in the Abell 2744 cluster field","abstract":[{"text":"Identifying Lyman continuum (LyC) leakers at intermediate redshifts is crucial for understanding the properties of cosmic reionizers because the opacity of the intergalactic medium (IGM) prevents the direct detection of LyC emission from sources during the Epoch of Reionization (EoR). In this study, we confirm two new LyC candidate leakers at z ∼ 3 in the Abell 2744 cluster field, with absolute escape fractions (fesc) of 0.83−0.80+0.15 and 0.74−0.70+0.23, respectively. The LyC emission was detected using HST/WFC3/F275W and F336W imaging. These two candidate leakers appear to be faint (MUV = −17.61 ± 0.06 and −18.22 ± 0.10), exhibit blue UV continuum slopes (β = −2.43 ± 0.05 and −1.92 ± 0.09), have low masses (M★ ∼ 107.51 ± 0.03 and 107.17 ± 0.15 M⊙) and Lyα equivalent widths of 90 ± 3 Å and 28 ± 12 Å, respectively. These two LyC candidate leakers were detected in a catalog of 91 spectroscopically confirmed sources using public spectra from the JWST and/or MUSE. We also analyzed properties that were proposed as indirect indicators of LyC emission, such as Lyα, the O32 ratio, and M★. We created a galaxy subsample that was selected according to these properties, stacked the LyC observations of this subsample, and assessed the limits of the escape fractions in the stacks. We aim to enhance our understanding of LyC escape mechanisms and improve our predictions of the LyC fesc during the EoR by analyzing the individual candidates and the stacks in the context of the currently limited sample of known LyC leakers at z ∼ 3.","lang":"eng"}],"type":"journal_article","file":[{"content_type":"application/pdf","date_created":"2026-01-05T09:26:17Z","creator":"dernst","date_updated":"2026-01-05T09:26:17Z","relation":"main_file","file_name":"2025_AstronomyAstrophysics_Liu.pdf","file_id":"20938","file_size":4642530,"success":1,"checksum":"3e6061f3c4bfb521b3333ea4913c241a","access_level":"open_access"}],"intvolume":"       704","status":"public","year":"2025","file_date_updated":"2026-01-05T09:26:17Z","volume":704,"has_accepted_license":"1"},{"quality_controlled":"1","_id":"20934","article_processing_charge":"No","OA_type":"gold","alternative_title":["TMLR"],"related_material":{"link":[{"url":"https://github.com/francescomontagna/learning-to-induce.git","relation":"software"}]},"department":[{"_id":"FrLo"}],"title":"Demystifying amortized causal discovery with transformers","abstract":[{"text":" Supervised learning for causal discovery from observational data often achieves competitive performance despite seemingly avoiding the explicit assumptions that traditional methods require for identifiability. In this work, we analyze CSIvA (Ke et al., 2023) on bivariate causal models, a transformer architecture for amortized inference promising to train on synthetic data and transfer to real ones. First, we bridge the gap with identifiability theory, showing that the training distribution implicitly defines a prior on the causal model of the test observations: consistent with classical approaches, good performance is achieved when we have a good prior on the test data, and the underlying model is identifiable. Second, we find that CSIvA can not generalize to classes of causal models unseen during training: to overcome this limitation, we theoretically and empirically analyze \\textit{when} training CSIvA on datasets generated by multiple identifiable causal models with different structural assumptions improves its generalization at test time. Overall, we find that amortized causal discovery still adheres to identifiability theory, violating the previous hypothesis from Lopez-Paz et al. (2015) that supervised learning methods could overcome its restrictions.","lang":"eng"}],"type":"journal_article","file":[{"file_name":"2025_PMLR_Montagna.pdf","relation":"main_file","date_updated":"2026-01-05T09:51:28Z","creator":"dernst","date_created":"2026-01-05T09:51:28Z","content_type":"application/pdf","file_size":1030280,"file_id":"20939","checksum":"968c471bb1f682cf823b2d4cadea8a3f","access_level":"open_access","success":1}],"status":"public","year":"2025","file_date_updated":"2026-01-05T09:51:28Z","has_accepted_license":"1","publisher":"ML Research Press","publication_status":"published","day":"18","language":[{"iso":"eng"}],"scopus_import":"1","arxiv":1,"publication_identifier":{"eissn":["2835-8856"]},"citation":{"apa":"Montagna, F., Cairney-Leeming, M. T., Sridhar, D., &#38; Locatello, F. (2025). Demystifying amortized causal discovery with transformers. <i>Transactions on Machine Learning Research</i>. ML Research Press.","ieee":"F. Montagna, M. T. Cairney-Leeming, D. Sridhar, and F. Locatello, “Demystifying amortized causal discovery with transformers,” <i>Transactions on Machine Learning Research</i>. ML Research Press, 2025.","chicago":"Montagna, Francesco, Maximilian T Cairney-Leeming, Dhanya Sridhar, and Francesco Locatello. “Demystifying Amortized Causal Discovery with Transformers.” <i>Transactions on Machine Learning Research</i>. ML Research Press, 2025.","short":"F. Montagna, M.T. Cairney-Leeming, D. Sridhar, F. Locatello, Transactions on Machine Learning Research (2025).","ista":"Montagna F, Cairney-Leeming MT, Sridhar D, Locatello F. 2025. Demystifying amortized causal discovery with transformers. Transactions on Machine Learning Research.","ama":"Montagna F, Cairney-Leeming MT, Sridhar D, Locatello F. Demystifying amortized causal discovery with transformers. <i>Transactions on Machine Learning Research</i>. 2025.","mla":"Montagna, Francesco, et al. “Demystifying Amortized Causal Discovery with Transformers.” <i>Transactions on Machine Learning Research</i>, ML Research Press, 2025."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_created":"2026-01-04T23:01:35Z","publication":"Transactions on Machine Learning Research","author":[{"last_name":"Montagna","full_name":"Montagna, Francesco","first_name":"Francesco","id":"353afc8e-19f4-11f0-9db9-811f1723c83f"},{"first_name":"Maximilian T","last_name":"Cairney-Leeming","full_name":"Cairney-Leeming, Maximilian T","id":"2214a80c-31f8-11ee-a48d-cf52cc58759b"},{"full_name":"Sridhar, Dhanya","last_name":"Sridhar","first_name":"Dhanya"},{"id":"26cfd52f-2483-11ee-8040-88983bcc06d4","orcid":"0000-0002-4850-0683","full_name":"Locatello, Francesco","last_name":"Locatello","first_name":"Francesco"}],"oa":1,"ddc":["000"],"month":"12","PlanS_conform":"1","corr_author":"1","OA_place":"publisher","article_type":"original","external_id":{"arxiv":["2405.16924"]},"date_published":"2025-12-18T00:00:00Z","date_updated":"2026-01-05T09:54:59Z","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"oa_version":"Published Version"},{"pmid":1,"issue":"31","volume":64,"has_accepted_license":"1","status":"public","intvolume":"        64","year":"2025","type":"journal_article","abstract":[{"lang":"eng","text":"A linker unit was designed and synthesized that can serve both as a hairpin turn in a DNA duplex and anchor point for an aromatic helical foldamer mimicking the shape and surface properties of B‐DNA. Methods were developed to synthesize natural/non‐natural chimeric molecules combining foldamer and DNA segments. The ability of the linker to position the foldamer helix and the duplex DNA so that their rims and grooves are in register, despite their completely different chemical nature, was demonstrated using single crystal X‐ray diffraction, circular dichroism and molecular models. Bio‐layer interferometry confirmed that artificial hairpin DNA duplexes keep their ability to bind to DNA binding proteins. The chimeric molecules may pave the way to competitive inhibitors of protein‐DNA interactions involving sequence‐selective DNA‐binding proteins."}],"title":"Interfacing B‐DNA and DNA mimic foldamers","_id":"20960","quality_controlled":"1","OA_type":"hybrid","article_processing_charge":"Yes (in subscription journal)","article_number":"e202505273","external_id":{"pmid":["40346004"]},"oa_version":"Published Version","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"date_updated":"2026-01-19T11:07:53Z","date_published":"2025-07-28T00:00:00Z","author":[{"last_name":"Loos","full_name":"Loos, Manuel","first_name":"Manuel"},{"full_name":"Xu, Felix","last_name":"Xu","first_name":"Felix"},{"orcid":"0000-0001-5996-956X","id":"6a3def15-d4b4-11ef-9fa9-a24c1f545ec3","first_name":"Pradeep K","last_name":"Mandal","full_name":"Mandal, Pradeep K"},{"last_name":"Chakrabortty","full_name":"Chakrabortty, Tulika","first_name":"Tulika"},{"first_name":"Céline","full_name":"Douat, Céline","last_name":"Douat"},{"last_name":"Konrad","full_name":"Konrad, David B.","first_name":"David B."},{"first_name":"Melis","last_name":"Cabbar","full_name":"Cabbar, Melis"},{"full_name":"Singer, Johannes","last_name":"Singer","first_name":"Johannes"},{"first_name":"Valentina","last_name":"Corvaglia","full_name":"Corvaglia, Valentina"},{"first_name":"Thomas","last_name":"Carell","full_name":"Carell, Thomas"},{"last_name":"Huc","full_name":"Huc, Ivan","first_name":"Ivan"}],"OA_place":"publisher","article_type":"original","doi":"10.1002/anie.202505273","PlanS_conform":"1","month":"07","ddc":["540"],"oa":1,"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1002/anie.202505273"}],"citation":{"mla":"Loos, Manuel, et al. “Interfacing B‐DNA and DNA Mimic Foldamers.” <i>Angewandte Chemie International Edition</i>, vol. 64, no. 31, e202505273, Wiley, 2025, doi:<a href=\"https://doi.org/10.1002/anie.202505273\">10.1002/anie.202505273</a>.","apa":"Loos, M., Xu, F., Mandal, P. K., Chakrabortty, T., Douat, C., Konrad, D. B., … Huc, I. (2025). Interfacing B‐DNA and DNA mimic foldamers. <i>Angewandte Chemie International Edition</i>. Wiley. <a href=\"https://doi.org/10.1002/anie.202505273\">https://doi.org/10.1002/anie.202505273</a>","ama":"Loos M, Xu F, Mandal PK, et al. Interfacing B‐DNA and DNA mimic foldamers. <i>Angewandte Chemie International Edition</i>. 2025;64(31). doi:<a href=\"https://doi.org/10.1002/anie.202505273\">10.1002/anie.202505273</a>","chicago":"Loos, Manuel, Felix Xu, Pradeep K Mandal, Tulika Chakrabortty, Céline Douat, David B. Konrad, Melis Cabbar, et al. “Interfacing B‐DNA and DNA Mimic Foldamers.” <i>Angewandte Chemie International Edition</i>. Wiley, 2025. <a href=\"https://doi.org/10.1002/anie.202505273\">https://doi.org/10.1002/anie.202505273</a>.","short":"M. Loos, F. Xu, P.K. Mandal, T. Chakrabortty, C. Douat, D.B. Konrad, M. Cabbar, J. Singer, V. Corvaglia, T. Carell, I. Huc, Angewandte Chemie International Edition 64 (2025).","ista":"Loos M, Xu F, Mandal PK, Chakrabortty T, Douat C, Konrad DB, Cabbar M, Singer J, Corvaglia V, Carell T, Huc I. 2025. Interfacing B‐DNA and DNA mimic foldamers. Angewandte Chemie International Edition. 64(31), e202505273.","ieee":"M. Loos <i>et al.</i>, “Interfacing B‐DNA and DNA mimic foldamers,” <i>Angewandte Chemie International Edition</i>, vol. 64, no. 31. Wiley, 2025."},"publication":"Angewandte Chemie International Edition","extern":"1","date_created":"2026-01-08T07:04:48Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","publisher":"Wiley","publication_identifier":{"issn":["1433-7851"],"eissn":["1521-3773"]},"scopus_import":"1","language":[{"iso":"eng"}],"day":"28"},{"publisher":"AIP Publishing","publication_status":"published","day":"22","scopus_import":"1","language":[{"iso":"eng"}],"arxiv":1,"publication_identifier":{"eissn":["1077-3118"],"issn":["0003-6951"]},"citation":{"mla":"Patel, Lipi, et al. “Impedance-Engineered Josephson Parametric Amplifier with Single-Step Lithography.” <i>Applied Physics Letters</i>, vol. 127, no. 25, 254001, AIP Publishing, 2025, doi:<a href=\"https://doi.org/10.1063/5.0290636\">10.1063/5.0290636</a>.","apa":"Patel, L., Hawaldar, S., Panikkar, A., Shankar, A., &#38; Suri, B. (2025). Impedance-engineered Josephson parametric amplifier with single-step lithography. <i>Applied Physics Letters</i>. AIP Publishing. <a href=\"https://doi.org/10.1063/5.0290636\">https://doi.org/10.1063/5.0290636</a>","ama":"Patel L, Hawaldar S, Panikkar A, Shankar A, Suri B. Impedance-engineered Josephson parametric amplifier with single-step lithography. <i>Applied Physics Letters</i>. 2025;127(25). doi:<a href=\"https://doi.org/10.1063/5.0290636\">10.1063/5.0290636</a>","ista":"Patel L, Hawaldar S, Panikkar A, Shankar A, Suri B. 2025. Impedance-engineered Josephson parametric amplifier with single-step lithography. Applied Physics Letters. 127(25), 254001.","chicago":"Patel, Lipi, Samarth Hawaldar, Aditya Panikkar, Athreya Shankar, and Baladitya Suri. “Impedance-Engineered Josephson Parametric Amplifier with Single-Step Lithography.” <i>Applied Physics Letters</i>. AIP Publishing, 2025. <a href=\"https://doi.org/10.1063/5.0290636\">https://doi.org/10.1063/5.0290636</a>.","short":"L. Patel, S. Hawaldar, A. Panikkar, A. Shankar, B. Suri, Applied Physics Letters 127 (2025).","ieee":"L. Patel, S. Hawaldar, A. Panikkar, A. Shankar, and B. Suri, “Impedance-engineered Josephson parametric amplifier with single-step lithography,” <i>Applied Physics Letters</i>, vol. 127, no. 25. AIP Publishing, 2025."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","acknowledgement":"The authors acknowledge receiving support from the Space Technology Cell at IISc and ISRO through the project STC-0444(2022) and the Ministry of Electronics and Information Technology of the Government of India, under the centre of Excellence of Quantum Technology at the Indian Institute of Science, as well as the office of Principle Scientific Advisor, Government of India. S.H. and A.P. acknowledge the support of the Kishore Vaigyanik Protsahan Yojana (KVPY). A.S. acknowledges the support of a New Faculty Initiation Grant (NFIG) from IIT Madras.","date_created":"2026-01-11T23:01:34Z","publication":"Applied Physics Letters","author":[{"full_name":"Patel, Lipi","last_name":"Patel","first_name":"Lipi"},{"orcid":"0000-0002-1965-4309","id":"221708e1-1ff6-11ee-9fa6-85146607433e","first_name":"Samarth","last_name":"Hawaldar","full_name":"Hawaldar, Samarth"},{"last_name":"Panikkar","full_name":"Panikkar, Aditya","first_name":"Aditya"},{"first_name":"Athreya","last_name":"Shankar","full_name":"Shankar, Athreya"},{"first_name":"Baladitya","full_name":"Suri, Baladitya","last_name":"Suri"}],"oa":1,"main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2507.09298"}],"month":"12","doi":"10.1063/5.0290636","article_type":"original","OA_place":"repository","external_id":{"arxiv":["2507.09298"]},"article_number":"254001","date_published":"2025-12-22T00:00:00Z","date_updated":"2026-01-12T09:57:53Z","oa_version":"Preprint","quality_controlled":"1","_id":"20976","article_processing_charge":"No","OA_type":"green","department":[{"_id":"JoFi"}],"title":"Impedance-engineered Josephson parametric amplifier with single-step lithography","abstract":[{"text":"We present an experimental demonstration of an impedance-engineered Josephson parametric amplifier (IEJPA) fabricated in a single-step lithography process. Impedance-engineering is implemented using a lumped-element series LC circuit. We use a simpler lithography process where the entire device—impedance transformer and Josephson parametric amplifier (JPA)—is patterned in a single electron beam lithography step, followed by a double-angle Dolan-bridge technique for Al–AlOx–Al deposition. We observe amplification with 18 dB gain over a wide 400 MHz bandwidth centered around 5.3 GHz with added noise approaching the quantum limit, and a saturation power of −114 dBm. To accurately explain our experimental results, we extend existing theories for IEJPAs to incorporate the full sine nonlinearity of both the JPA and the transformer. Our work provides a route to simpler realization of broadband JPAs and a theoretical foundation for a regime of JPA operation that has been less explored in literature.","lang":"eng"}],"type":"journal_article","intvolume":"       127","status":"public","year":"2025","volume":127,"issue":"25"},{"citation":{"apa":"Maslarova, A., Shin, J. N., Navas Olivé, A. C., Vöröslakos, M., Hamer, H., Doerfler, A., … Liu, A. (2025). Spatiotemporal patterns differentiate hippocampal sharp-wave ripples from interictal epileptiform discharges in mice and humans. <i>Nature Communications</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41467-025-66562-6\">https://doi.org/10.1038/s41467-025-66562-6</a>","ista":"Maslarova A, Shin JN, Navas Olivé AC, Vöröslakos M, Hamer H, Doerfler A, Henin S, Buzsáki G, Liu A. 2025. Spatiotemporal patterns differentiate hippocampal sharp-wave ripples from interictal epileptiform discharges in mice and humans. Nature Communications. 16, 11636.","ama":"Maslarova A, Shin JN, Navas Olivé AC, et al. Spatiotemporal patterns differentiate hippocampal sharp-wave ripples from interictal epileptiform discharges in mice and humans. <i>Nature Communications</i>. 2025;16. doi:<a href=\"https://doi.org/10.1038/s41467-025-66562-6\">10.1038/s41467-025-66562-6</a>","short":"A. Maslarova, J.N. Shin, A.C. Navas Olivé, M. Vöröslakos, H. Hamer, A. Doerfler, S. Henin, G. Buzsáki, A. Liu, Nature Communications 16 (2025).","chicago":"Maslarova, Anna, Jiyun N. Shin, Andrea C Navas Olivé, Mihály Vöröslakos, Hajo Hamer, Arnd Doerfler, Simon Henin, György Buzsáki, and Anli Liu. “Spatiotemporal Patterns Differentiate Hippocampal Sharp-Wave Ripples from Interictal Epileptiform Discharges in Mice and Humans.” <i>Nature Communications</i>. Springer Nature, 2025. <a href=\"https://doi.org/10.1038/s41467-025-66562-6\">https://doi.org/10.1038/s41467-025-66562-6</a>.","ieee":"A. Maslarova <i>et al.</i>, “Spatiotemporal patterns differentiate hippocampal sharp-wave ripples from interictal epileptiform discharges in mice and humans,” <i>Nature Communications</i>, vol. 16. Springer Nature, 2025.","mla":"Maslarova, Anna, et al. “Spatiotemporal Patterns Differentiate Hippocampal Sharp-Wave Ripples from Interictal Epileptiform Discharges in Mice and Humans.” <i>Nature Communications</i>, vol. 16, 11636, Springer Nature, 2025, doi:<a href=\"https://doi.org/10.1038/s41467-025-66562-6\">10.1038/s41467-025-66562-6</a>."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","acknowledgement":"We thank Karl Rössler and Sebastian Brandner for the human SEEG implantations; Katja Kobow for providing the histopathological findings of the patients; Jay Jeschke for help with human electrode localization; Esha Brahmbhatt and Deren Aykan for help with animal habituation; Mursel Karadas for the rodent treadmill design; Nicholas Paleologos, Noam Nitzan, Michael D Hadler and Samuel McKenzie for rating events in a human ripple survey included in a previous version of the manuscript; Nicholas Paleologos for sharing NYU iEEG data for validating UMAP parameters; Julio Esparza for help on the topological analysis through discussions; Thomas Hainmüller, Yiyao Zhang and Mursel Karadas for feedback on the manuscript. We would like to acknowledge Corticale SRL (Genoa, Italy) for providing the SiNAPS probes, and NeuroNexus (Ann Arbor, MI) for their contribution of the data acquisition system and Radiens software. We further acknowledge both Corticale and NeuroNexus for training and support making this research possible. This work was supported by the German Research Foundation (DFG; Walter Benjamin Fellowship MA 10301/1-1, A.M.), NYU Langone Health Finding a Cure for Epilepsy and Seizures (FACES, A.M.), the NOMIS Fellowship (A.N.-O.), the National Institutes of Health (R01NS127954, K23NS104252, A.L.; MH122391, U19NS107616, R01MH139216 G.B.,), and the NYU Department of Neurology (A.L.).","date_created":"2026-01-11T23:01:35Z","publication":"Nature Communications","publication_status":"published","publisher":"Springer Nature","project":[{"_id":"9B861AAC-BA93-11EA-9121-9846C619BF3A","name":"NOMIS Fellowship Program"}],"day":"30","language":[{"iso":"eng"}],"scopus_import":"1","publication_identifier":{"eissn":["2041-1723"]},"external_id":{"pmid":["39975118"]},"article_number":"11636","date_published":"2025-12-30T00:00:00Z","date_updated":"2026-01-12T09:31:56Z","tmp":{"image":"/images/cc_by_nc_nd.png","short":"CC BY-NC-ND (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)"},"oa_version":"Published Version","author":[{"full_name":"Maslarova, Anna","last_name":"Maslarova","first_name":"Anna"},{"last_name":"Shin","full_name":"Shin, Jiyun N.","first_name":"Jiyun N."},{"first_name":"Andrea C","full_name":"Navas Olivé, Andrea C","last_name":"Navas Olivé","orcid":"0000-0002-9280-8597","id":"739d26c9-52e8-11ee-8d72-f14d3893b4ce"},{"first_name":"Mihály","last_name":"Vöröslakos","full_name":"Vöröslakos, Mihály"},{"full_name":"Hamer, Hajo","last_name":"Hamer","first_name":"Hajo"},{"first_name":"Arnd","last_name":"Doerfler","full_name":"Doerfler, Arnd"},{"first_name":"Simon","last_name":"Henin","full_name":"Henin, Simon"},{"first_name":"György","last_name":"Buzsáki","full_name":"Buzsáki, György"},{"full_name":"Liu, Anli","last_name":"Liu","first_name":"Anli"}],"DOAJ_listed":"1","license":"https://creativecommons.org/licenses/by-nc-nd/4.0/","oa":1,"ddc":["570"],"month":"12","doi":"10.1038/s41467-025-66562-6","article_type":"original","OA_place":"publisher","department":[{"_id":"PeJo"}],"title":"Spatiotemporal patterns differentiate hippocampal sharp-wave ripples from interictal epileptiform discharges in mice and humans","abstract":[{"lang":"eng","text":"Hippocampal sharp-wave ripples (SPW-Rs) are high-frequency oscillations critical for memory consolidation. Despite extensive characterization in rodents, their detection in humans is limited by coarse spatial sampling, interictal epileptiform discharges (IEDs), and a lack of consensus on human ripple localization and morphology. Here, we demonstrate that mouse and human hippocampal ripples share spatial, spectral and temporal features, which are clearly distinct from IEDs. In recordings from male APP/PS1 mice, SPW-Rs were distinguishable from IEDs by multiple criteria. Hippocampal ripples recorded during NREM sleep in female and male surgical epilepsy patients exhibited similar narrowband frequency peaks and multiple ripple cycles in the CA1 and subiculum regions. Conversely, IEDs showed a broad spatial extent and wide-band frequency power. We developed a semi-automated, ripple curation toolbox (ripmap) to separate event waveforms by low-dimensional embedding to reduce false-positive rate in selected ripple channels. Our approach improves ripple detection and provides a firm foundation for future human memory research."}],"type":"journal_article","quality_controlled":"1","_id":"20977","article_processing_charge":"Yes","OA_type":"gold","pmid":1,"file_date_updated":"2026-01-12T09:30:15Z","volume":16,"has_accepted_license":"1","file":[{"access_level":"open_access","checksum":"a8a1670e197484382e087be60f643945","success":1,"file_size":7629997,"file_id":"20978","file_name":"2025_NatureComm_Maslarova.pdf","relation":"main_file","content_type":"application/pdf","date_updated":"2026-01-12T09:30:15Z","creator":"dernst","date_created":"2026-01-12T09:30:15Z"}],"intvolume":"        16","status":"public","year":"2025"},{"doi":"10.1101/2025.01.06.631460","OA_place":"repository","year":"2025","oa":1,"main_file_link":[{"url":"https://doi.org/10.1101/2025.01.06.631460","open_access":"1"}],"corr_author":"1","month":"05","author":[{"first_name":"Ivan","full_name":"Kulich, Ivan","last_name":"Kulich","id":"57a1567c-8314-11eb-9063-c9ddc3451a54"},{"first_name":"Denisa","full_name":"Oulehlová, Denisa","last_name":"Oulehlová"},{"id":"60466724-5355-11ee-ae5a-fa55e8f99c3d","first_name":"Dmitrii","full_name":"Vladimirtsev, Dmitrii","last_name":"Vladimirtsev"},{"id":"5c243f41-03f3-11ec-841c-96faf48a7ef9","full_name":"Zou, Minxia","last_name":"Zou","first_name":"Minxia"},{"first_name":"Edita","last_name":"Lileikyte","full_name":"Lileikyte, Edita"},{"first_name":"Alexey","last_name":"Bondar","full_name":"Bondar, Alexey"},{"first_name":"Katarína","last_name":"Kulichová","full_name":"Kulichová, Katarína"},{"first_name":"Martin","last_name":"Janda","full_name":"Janda, Martin"},{"last_name":"Iakovenko","full_name":"Iakovenko, Oksana","first_name":"Oksana"},{"last_name":"Neubergerová","full_name":"Neubergerová, Michaela","first_name":"Michaela"},{"full_name":"Studtrucker, Tanja","last_name":"Studtrucker","first_name":"Tanja"},{"first_name":"Roman","last_name":"Pleskot","full_name":"Pleskot, Roman"},{"first_name":"Petra","full_name":"Dietrich, Petra","last_name":"Dietrich"},{"id":"43905548-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-9767-8699","full_name":"Fendrych, Matyas","last_name":"Fendrych","first_name":"Matyas"},{"orcid":"0000-0002-8302-7596","id":"4159519E-F248-11E8-B48F-1D18A9856A87","first_name":"Jiří","last_name":"Friml","full_name":"Friml, Jiří"}],"status":"public","date_updated":"2026-04-07T11:41:43Z","oa_version":"Preprint","tmp":{"image":"/images/cc_by_nc_nd.png","short":"CC BY-NC-ND (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)"},"date_published":"2025-05-16T00:00:00Z","day":"16","article_processing_charge":"No","language":[{"iso":"eng"}],"publication_status":"draft","_id":"20982","date_created":"2026-01-13T14:07:58Z","publication":"bioRxiv","type":"preprint","title":"Armadillo repeat only proteins are required for the function of plant CNGC channels","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","abstract":[{"text":"Plant cells respond to a wide range of stimuli through intracellular calcium (Ca2+) signaling. Cyclic nucleotide-gated channels (CNGCs) are a major class of plant Ca2+ channels, with 20 homologs in Arabidopsis. These tetrameric plasma membrane proteins act downstream of diverse signals, such as phytohormones, extracellular damage, cell wall integrity or temperature. Here, we identify a class of plant-specific proteins, Armadillo Repeat Only (ARO), as essential regulators of possibly all plant CNGCs. Abrogation of functional sporophytic AROs results in a phenotypic pattern strongly reminiscent of CNGC dysfunction, including defects in root gravitropism, root hair growth and morphology, stomatal movement, and responses to extracellular ATP and the phytohormone auxin. aro2/3/4 mutants are fully resistant to the toxic effects caused by overexpression of CNGCs. AROs colocalize and physically interact with multiple CNGCs and modulate CNGC-dependent currents in Xenopus oocytes. Structural modeling and site-directed mutagenesis reveal AROs tetramer formation surrounding the CNGC channel, interacting via its IQ domain. Taken together, plant CNGC channels don’t act alone, but in a larger complex - channelosome, first of a kind in plants.","lang":"eng"}],"acknowledgement":"This project was supported by the Czech Science Foundation grant Nr. 25-16449S and by European\r\nUnion, Horizon Europe, project MOLIPEC, ID 101087030. Computational resources used for structural\r\nmodeling were provided by the e-INFRA CZ project (ID:90254), supported by the Ministry of Education,\r\nYouth and Sports of the Czech Republic. Part of the work was carried out with the support of a Growth\r\nFacility (BC Core Facilities; IPMB BC CAS). X. laevis oocytes were kindly provided by C. Korbmacher on\r\na regular basis (FAU Erlangen-Nürnberg). MF received support from the European Research Council\r\n(Grant 480 No. 101125499). We acknowledge the core facility LMH, the BC CAS supported by the MEYS\r\nCR (LM 2023050 Czech-BioImaging). DO received support from the Czech Science Foundation grant Nr.\r\n24-12107S\r\n","department":[{"_id":"JiFr"}],"related_material":{"record":[{"relation":"dissertation_contains","status":"public","id":"20964"}]},"citation":{"mla":"Kulich, Ivan, et al. “Armadillo Repeat Only Proteins Are Required for the Function of Plant CNGC Channels.” <i>BioRxiv</i>, doi:<a href=\"https://doi.org/10.1101/2025.01.06.631460\">10.1101/2025.01.06.631460</a>.","ieee":"I. Kulich <i>et al.</i>, “Armadillo repeat only proteins are required for the function of plant CNGC channels,” <i>bioRxiv</i>. .","ista":"Kulich I, Oulehlová D, Vladimirtsev D, Zou M, Lileikyte E, Bondar A, Kulichová K, Janda M, Iakovenko O, Neubergerová M, Studtrucker T, Pleskot R, Dietrich P, Fendrych M, Friml J. Armadillo repeat only proteins are required for the function of plant CNGC channels. bioRxiv, <a href=\"https://doi.org/10.1101/2025.01.06.631460\">10.1101/2025.01.06.631460</a>.","ama":"Kulich I, Oulehlová D, Vladimirtsev D, et al. Armadillo repeat only proteins are required for the function of plant CNGC channels. <i>bioRxiv</i>. doi:<a href=\"https://doi.org/10.1101/2025.01.06.631460\">10.1101/2025.01.06.631460</a>","short":"I. Kulich, D. Oulehlová, D. Vladimirtsev, M. Zou, E. Lileikyte, A. Bondar, K. Kulichová, M. Janda, O. Iakovenko, M. Neubergerová, T. Studtrucker, R. Pleskot, P. Dietrich, M. Fendrych, J. Friml, BioRxiv (n.d.).","chicago":"Kulich, Ivan, Denisa Oulehlová, Dmitrii Vladimirtsev, Minxia Zou, Edita Lileikyte, Alexey Bondar, Katarína Kulichová, et al. “Armadillo Repeat Only Proteins Are Required for the Function of Plant CNGC Channels.” <i>BioRxiv</i>, n.d. <a href=\"https://doi.org/10.1101/2025.01.06.631460\">https://doi.org/10.1101/2025.01.06.631460</a>.","apa":"Kulich, I., Oulehlová, D., Vladimirtsev, D., Zou, M., Lileikyte, E., Bondar, A., … Friml, J. (n.d.). Armadillo repeat only proteins are required for the function of plant CNGC channels. <i>bioRxiv</i>. <a href=\"https://doi.org/10.1101/2025.01.06.631460\">https://doi.org/10.1101/2025.01.06.631460</a>"}},{"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"oa_version":"Published Version","date_updated":"2026-01-20T07:23:34Z","date_published":"2025-12-29T00:00:00Z","article_number":"384","article_type":"original","OA_place":"publisher","doi":"10.1038/s41524-025-01911-z","PlanS_conform":"1","corr_author":"1","month":"12","oa":1,"ddc":["540"],"author":[{"full_name":"Zhong, Peichen","last_name":"Zhong","first_name":"Peichen"},{"full_name":"Kim, Dongjin","last_name":"Kim","first_name":"Dongjin"},{"first_name":"Daniel S.","full_name":"King, Daniel S.","last_name":"King"},{"first_name":"Bingqing","last_name":"Cheng","full_name":"Cheng, Bingqing","orcid":"0000-0002-3584-9632","id":"cbe3cda4-d82c-11eb-8dc7-8ff94289fcc9"}],"publication":"npj Computational Materials","date_created":"2026-01-15T12:17:07Z","acknowledgement":"The authors thank for valuable discussions with Pinchen Xie, David Limmer, Jeff Neaton, and Greg Voth. The authors thank Sebastien Hamel for providing the DFT MD trajectories for superionic water, and help clarifying questions related to the pseudopotentials. The authors thank Federico Grasselli and Stefano Baroni for providing data and notebooks for computing the conductivity of a molten salt. This research used the Savio computational cluster resource provided by the Berkeley Research Computing program at the University of California, Berkeley (supported by the UC Berkeley Chancellor, Vice Chancellor for Research, and Chief Information Officer). D.S.K. and P.Z. acknowledge funding from the BIDMaP Postdoctoral Fellowship.","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"mla":"Zhong, Peichen, et al. “Machine Learning Interatomic Potential Can Infer Electrical Response.” <i>Npj Computational Materials</i>, vol. 11, 384, Springer Nature, 2025, doi:<a href=\"https://doi.org/10.1038/s41524-025-01911-z\">10.1038/s41524-025-01911-z</a>.","apa":"Zhong, P., Kim, D., King, D. S., &#38; Cheng, B. (2025). Machine learning interatomic potential can infer electrical response. <i>Npj Computational Materials</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41524-025-01911-z\">https://doi.org/10.1038/s41524-025-01911-z</a>","ista":"Zhong P, Kim D, King DS, Cheng B. 2025. Machine learning interatomic potential can infer electrical response. npj Computational Materials. 11, 384.","short":"P. Zhong, D. Kim, D.S. King, B. Cheng, Npj Computational Materials 11 (2025).","chicago":"Zhong, Peichen, Dongjin Kim, Daniel S. King, and Bingqing Cheng. “Machine Learning Interatomic Potential Can Infer Electrical Response.” <i>Npj Computational Materials</i>. Springer Nature, 2025. <a href=\"https://doi.org/10.1038/s41524-025-01911-z\">https://doi.org/10.1038/s41524-025-01911-z</a>.","ama":"Zhong P, Kim D, King DS, Cheng B. Machine learning interatomic potential can infer electrical response. <i>npj Computational Materials</i>. 2025;11. doi:<a href=\"https://doi.org/10.1038/s41524-025-01911-z\">10.1038/s41524-025-01911-z</a>","ieee":"P. Zhong, D. Kim, D. S. King, and B. Cheng, “Machine learning interatomic potential can infer electrical response,” <i>npj Computational Materials</i>, vol. 11. Springer Nature, 2025."},"publication_identifier":{"eissn":["2057-3960"]},"language":[{"iso":"eng"}],"scopus_import":"1","day":"29","publication_status":"published","publisher":"Springer Nature","has_accepted_license":"1","volume":11,"file_date_updated":"2026-01-20T07:22:04Z","year":"2025","intvolume":"        11","status":"public","file":[{"file_name":"2025_npj_Zhong.pdf","relation":"main_file","content_type":"application/pdf","creator":"dernst","date_updated":"2026-01-20T07:22:04Z","date_created":"2026-01-20T07:22:04Z","file_size":2686255,"file_id":"21005","access_level":"open_access","checksum":"cc999804ba3bfed809ae46c73869e4e3","success":1}],"type":"journal_article","abstract":[{"lang":"eng","text":"Modeling the response of material and chemical systems to electric fields remains a longstanding challenge. Machine learning interatomic potentials (MLIPs) offer an efficient and scalable alternative to quantum mechanical methods, but do not by themselves incorporate electrical response. Here, we show that polarization and Born effective charge (BEC) tensors can be directly extracted from long-range MLIPs within the Latent Ewald Summation (LES) framework, solely by learning from energy and force data. Using this approach, we predict the infrared spectra of bulk water under zero or finite external electric fields, ionic conductivities of high-pressure superionic ice, and the phase transition and hysteresis in ferroelectric PbTiO3 perovskite. This work thus extends the capability of MLIPs to predict electrical response –without training on charges or polarization or BECs– and enables accurate modeling of electric-field-driven processes in diverse systems at scale."}],"title":"Machine learning interatomic potential can infer electrical response","department":[{"_id":"BiCh"}],"OA_type":"gold","article_processing_charge":"Yes","_id":"20990","quality_controlled":"1"},{"author":[{"id":"3D50B0BA-F248-11E8-B48F-1D18A9856A87","last_name":"Kolmogorov","full_name":"Kolmogorov, Vladimir","first_name":"Vladimir"}],"article_type":"original","OA_place":"publisher","doi":"10.1145/3748723","PlanS_conform":"1","month":"10","corr_author":"1","ddc":["510"],"oa":1,"external_id":{"arxiv":["2307.00115"]},"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"oa_version":"Published Version","date_updated":"2026-01-21T09:46:26Z","date_published":"2025-10-01T00:00:00Z","publisher":"Association for Computing Machinery","publication_status":"published","arxiv":1,"publication_identifier":{"issn":["1549-6325"],"eissn":["1549-6333"]},"scopus_import":"1","language":[{"iso":"eng"}],"day":"01","citation":{"mla":"Kolmogorov, Vladimir. “A Simpler and Parallelizable O(√log n)-Approximation Algorithm for SPARSEST CUT.” <i>ACM Transactions on Algorithms</i>, vol. 21, no. 4, Association for Computing Machinery, 2025, pp. 1–22, doi:<a href=\"https://doi.org/10.1145/3748723\">10.1145/3748723</a>.","apa":"Kolmogorov, V. (2025). A simpler and parallelizable O(√log n)-approximation algorithm for SPARSEST CUT. <i>ACM Transactions on Algorithms</i>. Association for Computing Machinery. <a href=\"https://doi.org/10.1145/3748723\">https://doi.org/10.1145/3748723</a>","chicago":"Kolmogorov, Vladimir. “A Simpler and Parallelizable O(√log n)-Approximation Algorithm for SPARSEST CUT.” <i>ACM Transactions on Algorithms</i>. Association for Computing Machinery, 2025. <a href=\"https://doi.org/10.1145/3748723\">https://doi.org/10.1145/3748723</a>.","short":"V. Kolmogorov, ACM Transactions on Algorithms 21 (2025) 1–22.","ista":"Kolmogorov V. 2025. A simpler and parallelizable O(√log n)-approximation algorithm for SPARSEST CUT. ACM Transactions on Algorithms. 21(4), 1–22.","ama":"Kolmogorov V. A simpler and parallelizable O(√log n)-approximation algorithm for SPARSEST CUT. <i>ACM Transactions on Algorithms</i>. 2025;21(4):1-22. doi:<a href=\"https://doi.org/10.1145/3748723\">10.1145/3748723</a>","ieee":"V. Kolmogorov, “A simpler and parallelizable O(√log n)-approximation algorithm for SPARSEST CUT,” <i>ACM Transactions on Algorithms</i>, vol. 21, no. 4. Association for Computing Machinery, pp. 1–22, 2025."},"publication":"ACM Transactions on Algorithms","date_created":"2026-01-20T10:04:02Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","intvolume":"        21","file":[{"content_type":"application/pdf","date_updated":"2026-01-21T09:38:09Z","creator":"dernst","date_created":"2026-01-21T09:38:09Z","file_name":"2025_ACMToA_Kolmogorov.pdf","relation":"main_file","success":1,"checksum":"4a80fdb1e3711b9a2768d2bb8f6d3b4e","access_level":"open_access","file_id":"21031","file_size":2208302}],"year":"2025","file_date_updated":"2026-01-21T09:38:09Z","issue":"4","has_accepted_license":"1","volume":21,"_id":"21007","quality_controlled":"1","page":"1-22","OA_type":"hybrid","article_processing_charge":"Yes (via OA deal)","department":[{"_id":"VlKo"}],"related_material":{"record":[{"relation":"shorter_version","status":"public","id":"17236"}]},"type":"journal_article","abstract":[{"text":"Currently, the best known tradeoff between approximation ratio and complexity for the Sparsest Cut problem is achieved by the algorithm in [Sherman, FOCS 2009]: it computes O(√(log n)/ε)-approximation using O(nε logO(1) n) maxflows for any ε∈[Θ(1/log n),Θ(1)]. It works by solving the SDP relaxation of [Arora-Rao-Vazirani, STOC 2004] using the Multiplicative Weights Update algorithm (MW) of [Arora-Kale, JACM 2016]. To implement one MW step, Sherman approximately solves a multicommodity flow problem using another application of MW. Nested MW steps are solved via a certain \"chaining\" algorithm that combines results of multiple calls to the maxflow algorithm. We present an alternative approach that avoids solving the multicommodity flow problem and instead computes \"violating paths\". This simplifies Sherman's algorithm by removing a need for a nested application of MW, and also allows parallelization: we show how to compute O(√(log n)/ε)-approximation via O(logO(1) n) maxflows using O(nε) processors. We also revisit Sherman's chaining algorithm, and present a simpler version together with a new analysis.","lang":"eng"}],"title":"A simpler and parallelizable O(√log n)-approximation algorithm for SPARSEST CUT"},{"author":[{"full_name":"Henzinger, Thomas A","last_name":"Henzinger","first_name":"Thomas A","id":"40876CD8-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2985-7724"},{"full_name":"Karimi, Mahyar","last_name":"Karimi","first_name":"Mahyar","id":"6e5417ba-5355-11ee-ae5a-94c2e510b26b","orcid":"0009-0005-0820-1696"},{"first_name":"K. S.","last_name":"Thejaswini","full_name":"Thejaswini, K. S.","id":"3807fb92-fdc1-11ee-bb4a-b4d8a431c753"}],"doi":"10.1145/3719027.3765137","OA_place":"publisher","oa":1,"ddc":["000"],"month":"11","corr_author":"1","external_id":{"arxiv":["2505.09276"]},"date_updated":"2026-03-13T13:37:19Z","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"oa_version":"Published Version","date_published":"2025-11-22T00:00:00Z","publication_status":"published","publisher":"Association for Computing Machinery","conference":{"location":"Taipei, Taiwan","name":"CCS: Conference on Computer and Communications Security","end_date":"2025-10-17","start_date":"2025-10-13"},"arxiv":1,"publication_identifier":{"isbn":["9798400715259"]},"day":"22","project":[{"call_identifier":"H2020","_id":"62781420-2b32-11ec-9570-8d9b63373d4d","name":"Vigilant Algorithmic Monitoring of Software","grant_number":"101020093"},{"grant_number":"F8502","name":"Interface Theory for Security and Privacy","_id":"34a1b658-11ca-11ed-8bc3-c75229f0241e"}],"scopus_import":"1","language":[{"iso":"eng"}],"citation":{"apa":"Henzinger, T. A., Karimi, M., &#38; Thejaswini, K. S. (2025). Privacy-preserving runtime verification. In <i>Proceedings of the 2025 ACM SIGSAC Conference on Computer and Communications Security</i> (pp. 2774–2787). Taipei, Taiwan: Association for Computing Machinery. <a href=\"https://doi.org/10.1145/3719027.3765137\">https://doi.org/10.1145/3719027.3765137</a>","ieee":"T. A. Henzinger, M. Karimi, and K. S. Thejaswini, “Privacy-preserving runtime verification,” in <i>Proceedings of the 2025 ACM SIGSAC Conference on Computer and Communications Security</i>, Taipei, Taiwan, 2025, pp. 2774–2787.","ama":"Henzinger TA, Karimi M, Thejaswini KS. Privacy-preserving runtime verification. In: <i>Proceedings of the 2025 ACM SIGSAC Conference on Computer and Communications Security</i>. Association for Computing Machinery; 2025:2774-2787. doi:<a href=\"https://doi.org/10.1145/3719027.3765137\">10.1145/3719027.3765137</a>","ista":"Henzinger TA, Karimi M, Thejaswini KS. 2025. Privacy-preserving runtime verification. Proceedings of the 2025 ACM SIGSAC Conference on Computer and Communications Security. CCS: Conference on Computer and Communications Security, 2774–2787.","short":"T.A. Henzinger, M. Karimi, K.S. Thejaswini, in:, Proceedings of the 2025 ACM SIGSAC Conference on Computer and Communications Security, Association for Computing Machinery, 2025, pp. 2774–2787.","chicago":"Henzinger, Thomas A, Mahyar Karimi, and K. S. Thejaswini. “Privacy-Preserving Runtime Verification.” In <i>Proceedings of the 2025 ACM SIGSAC Conference on Computer and Communications Security</i>, 2774–87. Association for Computing Machinery, 2025. <a href=\"https://doi.org/10.1145/3719027.3765137\">https://doi.org/10.1145/3719027.3765137</a>.","mla":"Henzinger, Thomas A., et al. “Privacy-Preserving Runtime Verification.” <i>Proceedings of the 2025 ACM SIGSAC Conference on Computer and Communications Security</i>, Association for Computing Machinery, 2025, pp. 2774–87, doi:<a href=\"https://doi.org/10.1145/3719027.3765137\">10.1145/3719027.3765137</a>."},"date_created":"2026-01-20T10:17:10Z","publication":"Proceedings of the 2025 ACM SIGSAC Conference on Computer and Communications Security","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","acknowledgement":"This work is a part of projects VAMOS that has received fund-ing from the European Research Council (ERC), grant agreementNo 101020093 and the Austrian Science Fund (FWF) SFB projectSpyCoDe F8502.We thank anonymous reviewers for pointing us to related work [ 3] and for their valuable suggestions that improved this paper.","file":[{"file_size":1241912,"file_id":"21024","checksum":"615ffddab6c7285158c2953acec6fa6f","access_level":"open_access","success":1,"file_name":"2025_CCS_HenzingerT.pdf","relation":"main_file","content_type":"application/pdf","creator":"dernst","date_updated":"2026-01-21T07:34:58Z","date_created":"2026-01-21T07:34:58Z"}],"status":"public","year":"2025","ec_funded":1,"file_date_updated":"2026-01-21T07:34:58Z","has_accepted_license":"1","quality_controlled":"1","_id":"21020","page":"2774-2787","OA_type":"hybrid","article_processing_charge":"Yes (via OA deal)","department":[{"_id":"ToHe"},{"_id":"GradSch"}],"related_material":{"record":[{"id":"21401","status":"public","relation":"dissertation_contains"}]},"type":"conference","title":"Privacy-preserving runtime verification","abstract":[{"text":"Runtime verification offers scalable solutions to improve the safety and reliability of systems. However, systems that require verification or monitoring by a third party to ensure compliance with a specification might contain sensitive information, causing privacy concerns when usual runtime verification approaches are used. Privacy is compromised if protected information about the system, or sensitive data that is processed by the system, is revealed. In addition, revealing the specification being monitored may undermine the essence of third-party verification.\r\nIn this work, we propose two novel protocols for the privacy-preserving runtime verification of systems against formal sequential specifications. In our first protocol, the monitor verifies whether the system satisfies the specification without learning anything else, though both parties are aware of the specification. Our second protocol ensures that the system remains oblivious to the monitored specification, while the monitor learns only whether the system satisfies the specification and nothing more. Our protocols adapt and improve existing techniques used in cryptography, and more specifically, multi-party computation.\r\nThe sequential specification defines the observation step of the monitor, whose granularity depends on the situation (e.g., banks may be monitored on a daily basis). Our protocols exchange a single message per observation step, after an initialisation phase. This design minimises communication overhead, enabling relatively lightweight privacy-preserving monitoring. We implement our approach for monitoring specifications described by register automata and evaluate it experimentally.","lang":"eng"}]},{"year":"2025","status":"public","file":[{"file_id":"21162","file_size":24386863,"success":1,"access_level":"open_access","checksum":"6c8dfe4291c41d5a2c2fd838105e10b9","content_type":"application/pdf","date_updated":"2026-02-09T06:06:14Z","creator":"dernst","date_created":"2026-02-09T06:06:14Z","file_name":"2025_ICLR_Gairola.pdf","relation":"main_file"}],"has_accepted_license":"1","file_date_updated":"2026-02-09T06:06:14Z","OA_type":"gold","article_processing_charge":"No","_id":"21049","quality_controlled":"1","type":"conference","abstract":[{"lang":"eng","text":"Post-hoc importance attribution methods are a popular tool for “explaining” Deep Neural Networks (DNNs) and are inherently based on the assumption that the explanations can be applied independently of how the models were trained. Contrarily, in this work we bring forward empirical evidence that challenges this very notion. Surprisingly, we discover a strong dependency on and demonstrate that the training details of a pre-trained model’s classification layer (<10% of model parameters) play a crucial role, much more than the pre-training scheme itself. This is of high practical relevance: (1) as techniques for pre-training models are becoming increasingly diverse, understanding the interplay between these techniques and attribution methods is critical; (2) it sheds light on an important yet overlooked assumption of post-hoc attribution methods which can drastically impact model explanations and how they are interpreted eventually. With this finding we also present simple yet effective adjustments to the classification layers, that can significantly enhance the quality of model explanations. We validate our findings across several visual pre-training frameworks (fully-supervised, self-supervised, contrastive vision-language training) and analyse how they impact explanations for a wide range of attribution methods on a diverse set of evaluation metrics."}],"title":"How to probe: Simple yet effective techniques for improving post-hoc explanations","department":[{"_id":"FrLo"}],"related_material":{"link":[{"url":"https://github.com/sidgairo18/how-to-probe","relation":"software"}]},"OA_place":"publisher","month":"01","corr_author":"1","oa":1,"ddc":["000"],"author":[{"first_name":"Siddhartha","full_name":"Gairola, Siddhartha","last_name":"Gairola","id":"fb21489d-057c-11f1-b1b6-d68cd6ae64f5"},{"first_name":"Moritz","last_name":"Böhle","full_name":"Böhle, Moritz"},{"orcid":"0000-0002-4850-0683","id":"26cfd52f-2483-11ee-8040-88983bcc06d4","first_name":"Francesco","last_name":"Locatello","full_name":"Locatello, Francesco"},{"full_name":"Schiele, Bernt","last_name":"Schiele","first_name":"Bernt"}],"oa_version":"Published Version","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"date_updated":"2026-02-09T06:11:17Z","date_published":"2025-01-22T00:00:00Z","external_id":{"arxiv":["2503.00641"]},"arxiv":1,"language":[{"iso":"eng"}],"day":"22","conference":{"end_date":"2025-04-28","name":"ICLR: International Conference on Learning Representations","start_date":"2025-04-24","location":"Singapore"},"publisher":"ICLR","publication_status":"published","publication":"13th International Conference on Learning Representations","date_created":"2026-01-27T12:48:35Z","acknowledgement":"We sincerely thank Sukrut Rao and Yue Fan for their valuable feedback on the paper and insightful discussions throughout the project. Additionally, we appreciate Sukrut’s help\r\nwith some LATEX sorcery. This work was partially supported by ELSA Mobility Program1\r\nas part of the ELLIS2 exchange program to the Institute of Science and Technology Austria (ISTA), where a portion of this research was conducted.","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"mla":"Gairola, Siddhartha, et al. “How to Probe: Simple yet Effective Techniques for Improving Post-Hoc Explanations.” <i>13th International Conference on Learning Representations</i>, ICLR, 2025.","apa":"Gairola, S., Böhle, M., Locatello, F., &#38; Schiele, B. (2025). How to probe: Simple yet effective techniques for improving post-hoc explanations. In <i>13th International Conference on Learning Representations</i>. Singapore: ICLR.","chicago":"Gairola, Siddhartha, Moritz Böhle, Francesco Locatello, and Bernt Schiele. “How to Probe: Simple yet Effective Techniques for Improving Post-Hoc Explanations.” In <i>13th International Conference on Learning Representations</i>. ICLR, 2025.","ama":"Gairola S, Böhle M, Locatello F, Schiele B. How to probe: Simple yet effective techniques for improving post-hoc explanations. In: <i>13th International Conference on Learning Representations</i>. ICLR; 2025.","ista":"Gairola S, Böhle M, Locatello F, Schiele B. 2025. How to probe: Simple yet effective techniques for improving post-hoc explanations. 13th International Conference on Learning Representations. ICLR: International Conference on Learning Representations.","short":"S. Gairola, M. Böhle, F. Locatello, B. Schiele, in:, 13th International Conference on Learning Representations, ICLR, 2025.","ieee":"S. Gairola, M. Böhle, F. Locatello, and B. Schiele, “How to probe: Simple yet effective techniques for improving post-hoc explanations,” in <i>13th International Conference on Learning Representations</i>, Singapore, 2025."}},{"_id":"21052","quality_controlled":"1","page":"300-331","OA_type":"hybrid","article_processing_charge":"No","type":"journal_article","abstract":[{"lang":"eng","text":"Program logics have proven a successful strategy for verification of complex programs. By providing local reasoning and means of abstraction and composition, they allow reasoning principles for individual components of a program to be combined to prove guarantees about a whole program. Crucially, these components and their proofs can be reused. However, this reuse is only available once the program logic has been defined. It is a frustrating fact of the status quo that whoever defines a new program logic must establish every part, both semantics and proof rules, from scratch. In spite of programming languages and program logics typically sharing many core features, reuse is generally not available across languages. Even inside one language, if the same underlying operation appears in multiple language primitives, reuse is typically not possible when establishing proof rules for the program logic.\r\nTo enable reuse across and inside languages when defining complex program logics (and proving them sound), we serve program logics à la carte by combining program logic fragments for the various effects of the language. Among other language features, the menu includes shared state, concurrency, and non-determinism as reusable, composable blocks that can be combined to define a program logic modularly. Our theory builds on ITrees as a framework to express language semantics and Iris as the underlying separation logic; the work has been mechanized in the Coq proof assistant."}],"title":"Program logics à la Carte","intvolume":"         9","status":"public","year":"2025","issue":"POPL","volume":9,"has_accepted_license":"1","publisher":"Association for Computing Machinery","publication_status":"published","publication_identifier":{"issn":["2475-1421"]},"scopus_import":"1","language":[{"iso":"eng"}],"day":"09","citation":{"ieee":"M. Vistrup, M. J. Sammler, and R. Jung, “Program logics à la Carte,” <i>Proceedings of the ACM on Programming Languages</i>, vol. 9, no. POPL. Association for Computing Machinery, pp. 300–331, 2025.","ama":"Vistrup M, Sammler MJ, Jung R. Program logics à la Carte. <i>Proceedings of the ACM on Programming Languages</i>. 2025;9(POPL):300-331. doi:<a href=\"https://doi.org/10.1145/3704847\">10.1145/3704847</a>","short":"M. Vistrup, M.J. Sammler, R. Jung, Proceedings of the ACM on Programming Languages 9 (2025) 300–331.","ista":"Vistrup M, Sammler MJ, Jung R. 2025. Program logics à la Carte. Proceedings of the ACM on Programming Languages. 9(POPL), 300–331.","chicago":"Vistrup, Max, Michael Joachim Sammler, and Ralf Jung. “Program Logics à La Carte.” <i>Proceedings of the ACM on Programming Languages</i>. Association for Computing Machinery, 2025. <a href=\"https://doi.org/10.1145/3704847\">https://doi.org/10.1145/3704847</a>.","apa":"Vistrup, M., Sammler, M. J., &#38; Jung, R. (2025). Program logics à la Carte. <i>Proceedings of the ACM on Programming Languages</i>. Association for Computing Machinery. <a href=\"https://doi.org/10.1145/3704847\">https://doi.org/10.1145/3704847</a>","mla":"Vistrup, Max, et al. “Program Logics à La Carte.” <i>Proceedings of the ACM on Programming Languages</i>, vol. 9, no. POPL, Association for Computing Machinery, 2025, pp. 300–31, doi:<a href=\"https://doi.org/10.1145/3704847\">10.1145/3704847</a>."},"publication":"Proceedings of the ACM on Programming Languages","extern":"1","date_created":"2026-01-28T06:35:47Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","author":[{"last_name":"Vistrup","full_name":"Vistrup, Max","first_name":"Max"},{"id":"510d3901-2a03-11ee-914d-d9ae9011f0a7","first_name":"Michael Joachim","last_name":"Sammler","full_name":"Sammler, Michael Joachim"},{"first_name":"Ralf","full_name":"Jung, Ralf","last_name":"Jung"}],"OA_place":"publisher","article_type":"original","doi":"10.1145/3704847","PlanS_conform":"1","month":"01","main_file_link":[{"open_access":"1"}],"oa":1,"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"oa_version":"Published Version","date_updated":"2026-02-09T06:19:36Z","date_published":"2025-01-09T00:00:00Z"},{"year":"2025","intvolume":"         9","status":"public","volume":9,"has_accepted_license":"1","issue":"POPL","article_processing_charge":"No","OA_type":"hybrid","page":"569-599","_id":"21053","quality_controlled":"1","abstract":[{"text":"Program verification tools are often implemented as front-end translations of an input program into an intermediate verification language (IVL) such as Boogie, GIL, Viper, or Why3. The resulting IVL program is then verified using an existing back-end verifier. A soundness proof for such a translational verifier needs to relate the input program and verification logic to the semantics of the IVL, which in turn needs to be connected with the verification logic implemented in the back-end verifiers. Performing such proofs is challenging due to the large semantic gap between the input and output programs and logics, especially for complex verification logics such as separation logic.\r\nThis paper presents a formal framework for reasoning about translational separation logic verifiers. At its center is a generic core IVL that captures the essence of different separation logics. We define its operational semantics and formally connect it to two different back-end verifiers, which use symbolic execution and verification condition generation, resp. Crucially, this semantics uses angelic non-determinism to enable the application of different proof search algorithms and heuristics in the back-end verifiers. An axiomatic semantics for the core IVL simplifies reasoning about the front-end translation by performing essential proof steps once and for all in the equivalence proof with the operational semantics rather than for each concrete front-end translation.\r\nWe illustrate the usefulness of our formal framework by instantiating our core IVL with elements of Viper and connecting it to two Viper back-ends as well as a front-end for concurrent separation logic. All our technical results have been formalized in Isabelle/HOL, including the core IVL and its semantics, the semantics of two back-ends for a subset of Viper, and all proofs.","lang":"eng"}],"title":"Formal foundations for translational separation logic verifiers","type":"journal_article","PlanS_conform":"1","month":"01","ddc":["000"],"article_type":"original","OA_place":"publisher","doi":"10.1145/3704856","author":[{"full_name":"Dardinier, Thibault","last_name":"Dardinier","first_name":"Thibault"},{"first_name":"Michael Joachim","full_name":"Sammler, Michael Joachim","last_name":"Sammler","id":"510d3901-2a03-11ee-914d-d9ae9011f0a7"},{"full_name":"Parthasarathy, Gaurav","last_name":"Parthasarathy","first_name":"Gaurav"},{"first_name":"Alexander J.","last_name":"Summers","full_name":"Summers, Alexander J."},{"first_name":"Peter","full_name":"Müller, Peter","last_name":"Müller"}],"date_published":"2025-01-09T00:00:00Z","oa_version":"Published Version","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"date_updated":"2026-02-09T06:25:01Z","external_id":{"arxiv":["2407.20002"]},"language":[{"iso":"eng"}],"day":"09","publication_identifier":{"issn":["2475-1421"]},"arxiv":1,"publisher":"Association for Computing Machinery","publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication":"Proceedings of the ACM on Programming Languages","extern":"1","date_created":"2026-01-28T06:36:57Z","citation":{"ieee":"T. Dardinier, M. J. Sammler, G. Parthasarathy, A. J. Summers, and P. Müller, “Formal foundations for translational separation logic verifiers,” <i>Proceedings of the ACM on Programming Languages</i>, vol. 9, no. POPL. Association for Computing Machinery, pp. 569–599, 2025.","chicago":"Dardinier, Thibault, Michael Joachim Sammler, Gaurav Parthasarathy, Alexander J. Summers, and Peter Müller. “Formal Foundations for Translational Separation Logic Verifiers.” <i>Proceedings of the ACM on Programming Languages</i>. Association for Computing Machinery, 2025. <a href=\"https://doi.org/10.1145/3704856\">https://doi.org/10.1145/3704856</a>.","short":"T. Dardinier, M.J. Sammler, G. Parthasarathy, A.J. Summers, P. Müller, Proceedings of the ACM on Programming Languages 9 (2025) 569–599.","ista":"Dardinier T, Sammler MJ, Parthasarathy G, Summers AJ, Müller P. 2025. Formal foundations for translational separation logic verifiers. Proceedings of the ACM on Programming Languages. 9(POPL), 569–599.","ama":"Dardinier T, Sammler MJ, Parthasarathy G, Summers AJ, Müller P. Formal foundations for translational separation logic verifiers. <i>Proceedings of the ACM on Programming Languages</i>. 2025;9(POPL):569-599. doi:<a href=\"https://doi.org/10.1145/3704856\">10.1145/3704856</a>","apa":"Dardinier, T., Sammler, M. J., Parthasarathy, G., Summers, A. J., &#38; Müller, P. (2025). Formal foundations for translational separation logic verifiers. <i>Proceedings of the ACM on Programming Languages</i>. Association for Computing Machinery. <a href=\"https://doi.org/10.1145/3704856\">https://doi.org/10.1145/3704856</a>","mla":"Dardinier, Thibault, et al. “Formal Foundations for Translational Separation Logic Verifiers.” <i>Proceedings of the ACM on Programming Languages</i>, vol. 9, no. POPL, Association for Computing Machinery, 2025, pp. 569–99, doi:<a href=\"https://doi.org/10.1145/3704856\">10.1145/3704856</a>."}},{"file":[{"file_name":"2025_AstrophysicalJournal_Setton.pdf","relation":"main_file","creator":"dernst","date_created":"2026-02-09T06:39:23Z","date_updated":"2026-02-09T06:39:23Z","content_type":"application/pdf","checksum":"2a424eb43748a6370ff058c98adb15c6","access_level":"open_access","success":1,"file_size":1989640,"file_id":"21163"}],"status":"public","intvolume":"       995","year":"2025","file_date_updated":"2026-02-09T06:39:23Z","has_accepted_license":"1","volume":995,"issue":"1","quality_controlled":"1","_id":"21057","article_processing_charge":"Yes","OA_type":"gold","department":[{"_id":"JoMa"}],"title":"Little Red Dots at an inflection point: Ubiquitous v-shaped turnover consistently occurs at the Balmer limit","abstract":[{"text":"Among the most puzzling early discoveries of JWST are “little red dots” (LRDs), compact red sources that host broad Balmer emission lines, and in many cases exhibit a “V-shaped” change in slope in the rest-optical. The physical properties of LRDs currently have order-of-magnitude uncertainties, because models to explain the continuum of these sources differ immensely. Here, we leverage the complete selection of red sources in the RUBIES program, supplemented with public PRISM spectra, to study the origin of this V shape. By fitting a broken power law with a flexible inflection point, we find that a large fraction of red Hα emitters at 2 < z < 6 exhibit a strong change in slope, and that all strong inflections appear associated with the Balmer limit (0.3645 μm). Using a simple model of a reddened active galactic nucleus (AGN) with an unobscured scattered-light component, we demonstrate that the observed V shape in LRDs is unlikely to occur at any specific wavelength if the entire continuum is dominated by light from a power-law AGN continuum. In contrast, models with an intrinsic feature at the Balmer limit, such as those that are dominated by an evolved stellar population, can produce the observed spectral shapes, provided that a reddened component picks up sufficiently redward of the break. While no model can comfortably explain the full LRD spectral energy distribution, the common inflection location suggests that a single component consistently dominates the rest-frame UV optical in LRDs, and that this component is associated with T ∼ 10^4 K hydrogen.","lang":"eng"}],"type":"journal_article","author":[{"full_name":"Setton, David J.","last_name":"Setton","first_name":"David J."},{"full_name":"Greene, Jenny E.","last_name":"Greene","first_name":"Jenny E."},{"first_name":"Anna","last_name":"de Graaff","full_name":"de Graaff, Anna"},{"first_name":"Yilun 逸伦","last_name":"Ma","full_name":"Ma, Yilun 逸伦"},{"first_name":"Joel","full_name":"Leja, Joel","last_name":"Leja"},{"id":"7439a258-f3c0-11ec-9501-9df22fe06720","orcid":"0000-0003-2871-127X","full_name":"Matthee, Jorryt J","last_name":"Matthee","first_name":"Jorryt J"},{"last_name":"Bezanson","full_name":"Bezanson, Rachel","first_name":"Rachel"},{"first_name":"Leindert A.","last_name":"Boogaard","full_name":"Boogaard, Leindert A."},{"full_name":"Cleri, Nikko J.","last_name":"Cleri","first_name":"Nikko J."},{"first_name":"Harley","last_name":"Katz","full_name":"Katz, Harley"},{"first_name":"Ivo","last_name":"Labbe","full_name":"Labbe, Ivo"},{"full_name":"Maseda, Michael V.","last_name":"Maseda","first_name":"Michael V."},{"first_name":"Ian","full_name":"McConachie, Ian","last_name":"McConachie"},{"last_name":"Miller","full_name":"Miller, Tim B.","first_name":"Tim B."},{"last_name":"Price","full_name":"Price, Sedona H.","first_name":"Sedona H."},{"first_name":"Katherine A.","full_name":"Suess, Katherine A.","last_name":"Suess"},{"first_name":"Pieter","last_name":"van Dokkum","full_name":"van Dokkum, Pieter"},{"last_name":"Wang 王","full_name":"Wang 王, Bingjie 冰洁","first_name":"Bingjie 冰洁"},{"full_name":"Weibel, Andrea","last_name":"Weibel","first_name":"Andrea"},{"first_name":"Katherine E.","full_name":"Whitaker, Katherine E.","last_name":"Whitaker"},{"first_name":"Christina C.","full_name":"Williams, Christina C.","last_name":"Williams"}],"DOAJ_listed":"1","ddc":["520"],"oa":1,"PlanS_conform":"1","month":"12","doi":"10.3847/1538-4357/ae1500","article_type":"original","OA_place":"publisher","external_id":{"arxiv":["2411.03424"]},"article_number":"118","date_published":"2025-12-09T00:00:00Z","date_updated":"2026-02-09T06:41:48Z","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"oa_version":"Published Version","publication_status":"published","publisher":"IOP Publishing","day":"09","scopus_import":"1","language":[{"iso":"eng"}],"arxiv":1,"publication_identifier":{"issn":["0004-637X"],"eissn":["1538-4357"]},"citation":{"ieee":"D. J. Setton <i>et al.</i>, “Little Red Dots at an inflection point: Ubiquitous v-shaped turnover consistently occurs at the Balmer limit,” <i>The Astrophysical Journal</i>, vol. 995, no. 1. IOP Publishing, 2025.","short":"D.J. Setton, J.E. Greene, A. de Graaff, Y.逸伦 Ma, J. Leja, J.J. Matthee, R. Bezanson, L.A. Boogaard, N.J. Cleri, H. Katz, I. Labbe, M.V. Maseda, I. McConachie, T.B. Miller, S.H. Price, K.A. Suess, P. van Dokkum, B.冰洁 Wang 王, A. Weibel, K.E. Whitaker, C.C. Williams, The Astrophysical Journal 995 (2025).","ama":"Setton DJ, Greene JE, de Graaff A, et al. Little Red Dots at an inflection point: Ubiquitous v-shaped turnover consistently occurs at the Balmer limit. <i>The Astrophysical Journal</i>. 2025;995(1). doi:<a href=\"https://doi.org/10.3847/1538-4357/ae1500\">10.3847/1538-4357/ae1500</a>","chicago":"Setton, David J., Jenny E. Greene, Anna de Graaff, Yilun 逸伦 Ma, Joel Leja, Jorryt J Matthee, Rachel Bezanson, et al. “Little Red Dots at an Inflection Point: Ubiquitous v-Shaped Turnover Consistently Occurs at the Balmer Limit.” <i>The Astrophysical Journal</i>. IOP Publishing, 2025. <a href=\"https://doi.org/10.3847/1538-4357/ae1500\">https://doi.org/10.3847/1538-4357/ae1500</a>.","ista":"Setton DJ, Greene JE, de Graaff A, Ma Y逸伦, Leja J, Matthee JJ, Bezanson R, Boogaard LA, Cleri NJ, Katz H, Labbe I, Maseda MV, McConachie I, Miller TB, Price SH, Suess KA, van Dokkum P, Wang 王 B冰洁, Weibel A, Whitaker KE, Williams CC. 2025. Little Red Dots at an inflection point: Ubiquitous v-shaped turnover consistently occurs at the Balmer limit. The Astrophysical Journal. 995(1), 118.","apa":"Setton, D. J., Greene, J. E., de Graaff, A., Ma, Y. 逸伦, Leja, J., Matthee, J. J., … Williams, C. C. (2025). Little Red Dots at an inflection point: Ubiquitous v-shaped turnover consistently occurs at the Balmer limit. <i>The Astrophysical Journal</i>. IOP Publishing. <a href=\"https://doi.org/10.3847/1538-4357/ae1500\">https://doi.org/10.3847/1538-4357/ae1500</a>","mla":"Setton, David J., et al. “Little Red Dots at an Inflection Point: Ubiquitous v-Shaped Turnover Consistently Occurs at the Balmer Limit.” <i>The Astrophysical Journal</i>, vol. 995, no. 1, 118, IOP Publishing, 2025, doi:<a href=\"https://doi.org/10.3847/1538-4357/ae1500\">10.3847/1538-4357/ae1500</a>."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","acknowledgement":"This work is based in part on observations made with the NASA/ESA/CSA James Webb Space Telescope. The data were obtained from the Mikulski Archive for Space Telescopes at the Space Telescope Science Institute, which is operated by the Association of Universities for Research in Astronomy, Inc., under NASA contract NAS 5-03127 for JWST. The specific observations analyzed can be accessed via DOI: 10.17909/0esg-h949. All of the data products presented herein were retrieved from the Dawn JWST Archive (DJA). DJA is an initiative of the Cosmic Dawn Center, which is funded by the Danish National Research Foundation under grant No. 140. We express gratitude toward the members of the GTO, GO, and DDT teams, whose public data we utilized in this work.\r\n\r\nSupport for this work was provided by The Brinson Foundation through a Brinson Prize Fellowship grant. Support for program No. 4233 was provided by NASA through a grant from the Space Telescope Science Institute, which is operated by the Association of Universities for Research in Astronomy, Inc., under NASA contract NAS 5-03127. This research was supported by the International Space Science Institute (ISSI) in Bern, through ISSI International Team project No. 562. D.S. acknowledges helpful conversations with Xiaohui Fan and Jared Siegel that contributed to the quality of this work, in addition to aesthetic sign-off from Stephanie Permut on the colors of figures. T.B.M. was supported by a CIERA fellowship. The work of CCW is supported by NOIRLab, which is managed by the Association of Universities for Research in Astronomy (AURA) under a cooperative agreement with the National Science Foundation.","date_created":"2026-01-28T15:21:47Z","publication":"The Astrophysical Journal"}]