[{"publication_identifier":{"issn":["1431-0635"],"eissn":["1431-0643"]},"article_processing_charge":"Yes (in subscription journal)","das_tickbox":"0","title":"Equivariant K-theory, affine Grassmannian and perfection","publisher":"EMS Press","ddc":["500"],"date_published":"2026-03-26T00:00:00Z","fulldoi":"https://doi.org/10.4171/dm/1064","type":"journal_article","publication":"Documenta Mathematica","mathsc":["19E08","19L47","20G44","14G17","19D55","14F43","14L30","14D24","14M25"],"project":[{"name":"Geometry of the tip of the global nilpotent cone","_id":"34b2c9cb-11ca-11ed-8bc3-a50ba74ca4a3","grant_number":"P35847"}],"PlanS_conform":"1","tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"date_updated":"2026-08-26T06:53:54Z","month":"03","oa_version":"Published Version","corr_author":"1","_id":"22693","doi":"10.4171/dm/1064","department":[{"_id":"GradSch"},{"_id":"TaHa"}],"acknowledgement":"I would like to thank the following people for fruitful discussions,\r\nhelpful sanity checks or comments on previous drafts: Roman Bezrukavnikov, Jens Niklas Eberhardt, Mischa Elkner, Tamás Hausel, Andres Fernandez Herrero, Adeel Khan,\r\nBernhard Köck, Andrei Konovalov, Quoc Ho, Mirko Mauri, Matthew Morrow, Charanya\r\nRavi, Kamil Rychlewicz, Shyiu Shen, Vladimir Sosnilo, Georg Tamme, Xinwen Zhu. I\r\nwould further like to thank Marc Hoyois and the anonymous referee for spotting an error\r\nin a previous version.\r\nThis work was done during author’s PhD at the Institute of Science and Technology Austria (ISTA). It was funded by a DOC Fellowship of the Austrian Academy\r\nof Sciences and by the Austrian Science Fund (FWF) 10.55776/P35847. For open access\r\npurposes, the author has applied a CC BY public copyright license to any author-accepted\r\nmanuscript version arising from this submission.","year":"2026","author":[{"id":"e3b80ae2-eb8e-11eb-b029-9aef4a9108a0","last_name":"Löwit","full_name":"Löwit, Jakub","first_name":"Jakub"}],"date_created":"2026-08-12T13:29:17Z","abstract":[{"text":"We study torus-equivariant algebraic K-theory of affine Schubert varieties in the perfect affine Grassmannians over Fp. We further compare it to the torus-equivariant Hochschild homology of perfect complexes, which has a geometric description in terms of global functions on certain fixed-point schemes. We prove that Fp-linearly, this comparison is an isomorphism. Our approach is quite constructive, resulting in new computations of these K-theory rings. We establish various structural results for equivariant perfect algebraic K-theory on the way; we believe these are of independent interest.","lang":"eng"}],"OA_type":"hybrid","related_material":{"record":[{"id":"22694","relation":"dissertation_contains","status":"public"}]},"researchdata_availability":"no","OA_place":"publisher","publication_status":"epub_ahead","keyword":["equivariant algebraic K-theory","perfection in positive characteristic","affine Grassmannian","affine Schubert varieties","Dennis trace map","equivariant Hochschild homology","fixed-point schemes","toric varieties"],"language":[{"iso":"eng"}],"external_id":{"arxiv":["2409.18925"]},"oa":1,"supplementarymaterial":"no","scopus_import":"1","quality_controlled":"1","day":"26","citation":{"ieee":"J. Löwit, “Equivariant K-theory, affine Grassmannian and perfection,” <i>Documenta Mathematica</i>. EMS Press, 2026.","short":"J. Löwit, Documenta Mathematica (2026).","chicago":"Löwit, Jakub. “Equivariant K-Theory, Affine Grassmannian and Perfection.” <i>Documenta Mathematica</i>. EMS Press, 2026. <a href=\"https://doi.org/10.4171/dm/1064\">https://doi.org/10.4171/dm/1064</a>.","apa":"Löwit, J. (2026). Equivariant K-theory, affine Grassmannian and perfection. <i>Documenta Mathematica</i>. EMS Press. <a href=\"https://doi.org/10.4171/dm/1064\">https://doi.org/10.4171/dm/1064</a>","mla":"Löwit, Jakub. “Equivariant K-Theory, Affine Grassmannian and Perfection.” <i>Documenta Mathematica</i>, EMS Press, 2026, doi:<a href=\"https://doi.org/10.4171/dm/1064\">10.4171/dm/1064</a>.","ama":"Löwit J. Equivariant K-theory, affine Grassmannian and perfection. <i>Documenta Mathematica</i>. 2026. doi:<a href=\"https://doi.org/10.4171/dm/1064\">10.4171/dm/1064</a>","ista":"Löwit J. 2026. Equivariant K-theory, affine Grassmannian and perfection. Documenta Mathematica."},"status":"public","article_type":"original","main_file_link":[{"open_access":"1","url":"https://doi.org/10.4171/DM/1064"}],"has_accepted_license":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","arxiv":1},{"date_published":"2026-08-12T00:00:00Z","fulldoi":"https://doi.org/10.15479/AT-ISTA-22684","ddc":["530"],"publisher":"Institute of Science and Technology Austria","publication_identifier":{"issn":["2663-337X"],"isbn":["978-3-99078-083-1"]},"degree_awarded":"PhD","article_processing_charge":"No","title":"Experimental probing of nanoscale charge features and surface morphology changes during tribocharging","project":[{"name":"Tribocharge: a multi-scale approach to an enduring problem in physics","grant_number":"949120","call_identifier":"H2020","_id":"0aa60e99-070f-11eb-9043-a6de6bdc3afa"}],"supervisor":[{"last_name":"Waitukaitis","id":"3A1FFC16-F248-11E8-B48F-1D18A9856A87","full_name":"Waitukaitis, Scott R","first_name":"Scott R","orcid":"0000-0002-2299-3176"}],"type":"dissertation","page":"107","_id":"22684","corr_author":"1","tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"oa_version":"Published Version","month":"08","date_updated":"2026-08-27T11:42:44Z","date_created":"2026-08-12T09:44:40Z","doi_confirm":"1","author":[{"full_name":"Pertl, Felix","id":"6313aec0-15b2-11ec-abd3-ed67d16139af","last_name":"Pertl","orcid":"0000-0003-0463-5794","first_name":"Felix"}],"acknowledgement":"This project has received financing from the European Research Council grant agreement\r\nno. 949120 under the European Union’s Horizon 2020 research and innovation programme.\r\nThis research was supported by the Scientific Service Units of The Institute of Science\r\nand Technology Austria (ISTA) through resources provided by the Miba Machine Shop, the\r\nNanofabrication Facility, the Lab Support Facility, the Scientific Computing Facility and the\r\nElectron Microscopy Facility. We thank Florian Stumpf from Park Systems for useful discussions\r\nand support with scanning probe microscopy. We thank Joaquin Garcia-Suarez and Guillaume\r\nAnciaux for the suggestion to look into the roughness power spectral density. We thank\r\nIrina-Malina Strugaru for help with testing the device for Young’s modulus measurements.\r\n","year":"2026","doi":"10.15479/AT-ISTA-22684","department":[{"_id":"GradSch"},{"_id":"ScWa"}],"related_material":{"record":[{"id":"20481","status":"public","relation":"part_of_dissertation"},{"id":"12109","relation":"part_of_dissertation","status":"public"},{"status":"public","relation":"part_of_dissertation","id":"19278"},{"id":"17373","status":"public","relation":"part_of_dissertation"}]},"abstract":[{"text":"Contact electrification (CE) is a simple yet elusive phenomenon that occurs when two materials come into contact and separate, leaving behind net electrical charge. Despite its ubiquity, the microscopic origin of CE remains unclear. In this thesis, we investigate CE from three complementary perspectives: developing a quantitative method to measure charge at the nanoscale, exploring the dynamic behavior of charge on insulating surfaces, and uncovering the role of mechanical history in forming a triboelectric series.\r\n\r\nIn the first part, we establish a rigorous framework for converting qualitative Kelvin probe force microscopy (KPFM) voltage maps into quantitative charge density distributions. Using finite element method (FEM) simulations, we determine the point-spread function of the KPFM tip–sample geometry and demonstrate that the true surface charge can be reconstructed by numerical deconvolution. This procedure enables the recovery of both the magnitude and sign of charge density with high fidelity, resolving nanoscale features that are otherwise obscured. Applying the method to contact-charged SiO$_2$ surfaces, we show that existing analytical approximations, such as parallel plate or spherical models, can miscalculate charge magnitude by orders of magnitude. Our hybrid FEM/KPFM approach therefore provides a fast and general method to convert qualitative KPFM signals into quantitative charge data, enabling nanoscale charge mapping under realistic experimental conditions.\r\n\r\nIn the second part, we study the temporal stability of CE-induced charges and identify the key material factors that determine whether KPFM can capture meaningful charge patterns. Through time-resolved experiments combining a custom-built transfer system with both microscopic and macroscopic measurements, we demonstrate that only the best insulators, such as SiO$_2$, preserve CE charge long enough for stationary imaging. For less conductive polymers, such as PDMS, charge decays within the duration of a single KPFM scan due to bulk conduction. Using a simple capacitor-based model, we reproduce the observed decay dynamics and confirm that the transferred charge decays characteristic to the sample's bulk conductivity. Further, we always observe homogeneous charge transfer.\r\n\r\nIn the third part, we address the question: can we form a triboelectric series with identical materials? Using controlled repetitive contact experiments, we show that nominally identical materials can progressively order themselves into a triboelectric series, where surfaces with more contact history charge negatively relative to fresher ones. By constructing a minimal model based on this ``contact bias'', we replicate the evolution from random to ordered charging observed in experiments. Supporting surface analyses, including atomic force microscopy, reveal that repeated contact induces nanoscale morphological changes, suggesting a mechanism tightly coupled to mechanical strain. These results highlight the crucial role of surface history and nanoscale mechanics in dictating charge transfer, motivating further exploration of mechanisms such as mechanochemical bond cleavage and flexoelectric polarization.","lang":"eng"}],"language":[{"iso":"eng"}],"oa":1,"publication_status":"published","OA_place":"publisher","acknowledged_ssus":[{"_id":"NanoFab"},{"_id":"ScienComp"},{"_id":"LifeSc"},{"_id":"M-Shop"},{"_id":"EM-Fac"}],"status":"public","citation":{"chicago":"Pertl, Felix. “Experimental Probing of Nanoscale Charge Features and Surface Morphology Changes during Tribocharging.” Institute of Science and Technology Austria, 2026. <a href=\"https://doi.org/10.15479/AT-ISTA-22684\">https://doi.org/10.15479/AT-ISTA-22684</a>.","apa":"Pertl, F. (2026). <i>Experimental probing of nanoscale charge features and surface morphology changes during tribocharging</i>. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT-ISTA-22684\">https://doi.org/10.15479/AT-ISTA-22684</a>","ieee":"F. Pertl, “Experimental probing of nanoscale charge features and surface morphology changes during tribocharging,” Institute of Science and Technology Austria, 2026.","short":"F. Pertl, Experimental Probing of Nanoscale Charge Features and Surface Morphology Changes during Tribocharging, Institute of Science and Technology Austria, 2026.","ama":"Pertl F. Experimental probing of nanoscale charge features and surface morphology changes during tribocharging. 2026. doi:<a href=\"https://doi.org/10.15479/AT-ISTA-22684\">10.15479/AT-ISTA-22684</a>","ista":"Pertl F. 2026. Experimental probing of nanoscale charge features and surface morphology changes during tribocharging. Institute of Science and Technology Austria.","mla":"Pertl, Felix. <i>Experimental Probing of Nanoscale Charge Features and Surface Morphology Changes during Tribocharging</i>. Institute of Science and Technology Austria, 2026, doi:<a href=\"https://doi.org/10.15479/AT-ISTA-22684\">10.15479/AT-ISTA-22684</a>."},"day":"12","file_date_updated":"2026-08-12T13:04:21Z","file":[{"creator":"fpertl","access_level":"closed","content_type":"application/x-zip-compressed","file_id":"22690","file_name":"2026_Pertl_Felix_Thesis.zip","date_updated":"2026-08-12T13:04:21Z","file_size":31192621,"checksum":"0a4f5a941c40b921447e72291d72bc6f","date_created":"2026-08-12T13:04:21Z","relation":"source_file"},{"date_created":"2026-08-12T13:04:21Z","checksum":"ae60dcdb363222138886b2857643d4e3","relation":"main_file","file_id":"22691","content_type":"application/pdf","access_level":"open_access","creator":"fpertl","file_size":27882509,"date_updated":"2026-08-12T13:04:21Z","file_name":"2026_Pertl_Felix_Thesis.pdf"}],"user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","alternative_title":["ISTA Thesis"],"has_accepted_license":"1","ec_funded":1},{"project":[{"name":"IST-BRIDGE: International postdoctoral program","grant_number":"101034413","call_identifier":"H2020","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c"},{"name":"A molecular atlas of Actin filament IDentities in the cell motility machinery","grant_number":"101076260","_id":"bd980d18-d553-11ed-ba76-ceaa645c97eb"}],"publication":"Science","issue":"6795","type":"journal_article","fulldoi":"https://doi.org/10.1126/science.aea6343","date_published":"2026-04-16T00:00:00Z","publisher":"AAAS","article_processing_charge":"No","title":"Repurposing of a DNA segregation machinery into a cytoskeletal system controlling cell shape","publication_identifier":{"issn":["0036-8075"],"eissn":["1095-9203"]},"date_created":"2026-04-26T22:01:46Z","author":[{"first_name":"Benjamin L","orcid":"0000-0002-3461-5391","last_name":"Springstein","id":"b4eb62ef-ac72-11ed-9503-ed3b4d66c083","full_name":"Springstein, Benjamin L"},{"id":"305ab18b-dc7d-11ea-9b2f-b58195228ea2","last_name":"Javoor","full_name":"Javoor, Manjunath","first_name":"Manjunath","orcid":"0000-0003-2311-2112"},{"first_name":"Daniela","last_name":"Megrian","full_name":"Megrian, Daniela"},{"full_name":"Hajdu, Roman","last_name":"Hajdu","id":"ffab949d-133f-11ed-8f02-94de21ace503","first_name":"Roman"},{"full_name":"Hanke, Dustin M.","last_name":"Hanke","first_name":"Dustin M."},{"first_name":"Bettina","orcid":"0000-0002-9561-1239","id":"45FD126C-F248-11E8-B48F-1D18A9856A87","last_name":"Zens","full_name":"Zens, Bettina"},{"full_name":"Weiss, Gregor L.","last_name":"Weiss","first_name":"Gregor L."},{"full_name":"Schur, Florian Km","last_name":"Schur","id":"48AD8942-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-4790-8078","first_name":"Florian Km"},{"last_name":"Loose","id":"462D4284-F248-11E8-B48F-1D18A9856A87","full_name":"Loose, Martin","first_name":"Martin","orcid":"0000-0001-7309-9724"}],"year":"2026","acknowledgement":"We thank all members of the Loose lab at ISTA for helpful discussions; M. Kojic for critical reading of the manuscript; A. Herrero (Sevilla University) for sharing her extensive BACTH plasmid library and other plasmids, as well as cyanobacterial strains; T. Dagan and F. Nies (both Kiel University) for sharing cyanobacterial strains and plasmids and for valuable discussions; N. Sapay and A. Michon for providing the Amphipaseek code, which enabled us to perform our large-scale amphipathic helix screen of cyanobacterial CorR proteins; V.-V. Hodirnau for support in cryo-ET data collection; and J. Hansen for advice about cryo-EM data processing.\r\nThis work was supported by the Scientific Service Units (SSU) of ISTA through resources provided by the Imaging & Optics Facility (IOF), the Scientific Computing (SciComp), the Electron Microscopy Facility (EMF), and the Lab Support Facility (LSF). This work was funded by the European Union’s Horizon 2020 research and innovation program (Marie Skłodowska-Curie grant 101034413 to B.L.S.); the European Research Council (ERC) of the European Union (grant ActinID 101076260 to F.K.M.S.); the Swiss National Science Foundation (starting grant TMSGI3_226208 to G.L.W.); and the Jean-Jacques et Letitia Lopez-Loreta Foundation (G.L.W.).","department":[{"_id":"MaLo"},{"_id":"FlSc"},{"_id":"GradSch"},{"_id":"EM-Fac"}],"doi":"10.1126/science.aea6343","volume":392,"_id":"21762","corr_author":"1","date_updated":"2026-09-03T09:36:24Z","month":"04","oa_version":"None","quality_controlled":"1","scopus_import":"1","language":[{"iso":"eng"}],"external_id":{"pmid":["41990175"]},"publication_status":"published","related_material":{"record":[{"status":"public","relation":"dissertation_contains","id":"22744"}]},"OA_type":"closed access","intvolume":"       392","abstract":[{"text":"Bacteria, like eukaryotes, use conserved cytoskeletal systems for intracellular organization. The plasmid-encoded ParMRC system forms actin-like filaments that segregate low–copy number plasmids. In multicellular cyanobacteria such as Anabaena sp., we found that a chromosomally encoded ParMR system has evolved into a cytoskeletal system named CorMR with a function in cell shape control rather than DNA segregation. Live-cell imaging, in vitro reconstitution, and cryo–electron microscopy revealed that CorM formed dynamically unstable, antiparallel double-stranded filaments that were recruited to the membrane by CorR through an amphipathic helix conserved in multicellular cyanobacteria. CorMR filaments were regulated by MinC, which excluded them from the poles and division plane. Comparative genomics indicated that the repurposing of ParMR and Min systems coevolved with cyanobacterial multicellularity, highlighting the evolutionary plasticity of cytoskeletal systems in bacteria.","lang":"eng"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_number":"eaea6343","pmid":1,"ec_funded":1,"acknowledged_ssus":[{"_id":"Bio"},{"_id":"ScienComp"},{"_id":"EM-Fac"},{"_id":"LifeSc"}],"article_type":"original","status":"public","citation":{"ieee":"B. L. Springstein <i>et al.</i>, “Repurposing of a DNA segregation machinery into a cytoskeletal system controlling cell shape,” <i>Science</i>, vol. 392, no. 6795. AAAS, 2026.","short":"B.L. Springstein, M. Javoor, D. Megrian, R. Hajdu, D.M. Hanke, B. Zens, G.L. Weiss, F.K. Schur, M. Loose, Science 392 (2026).","apa":"Springstein, B. L., Javoor, M., Megrian, D., Hajdu, R., Hanke, D. M., Zens, B., … Loose, M. (2026). Repurposing of a DNA segregation machinery into a cytoskeletal system controlling cell shape. <i>Science</i>. AAAS. <a href=\"https://doi.org/10.1126/science.aea6343\">https://doi.org/10.1126/science.aea6343</a>","chicago":"Springstein, Benjamin L, Manjunath Javoor, Daniela Megrian, Roman Hajdu, Dustin M. Hanke, Bettina Zens, Gregor L. Weiss, Florian KM Schur, and Martin Loose. “Repurposing of a DNA Segregation Machinery into a Cytoskeletal System Controlling Cell Shape.” <i>Science</i>. AAAS, 2026. <a href=\"https://doi.org/10.1126/science.aea6343\">https://doi.org/10.1126/science.aea6343</a>.","mla":"Springstein, Benjamin L., et al. “Repurposing of a DNA Segregation Machinery into a Cytoskeletal System Controlling Cell Shape.” <i>Science</i>, vol. 392, no. 6795, eaea6343, AAAS, 2026, doi:<a href=\"https://doi.org/10.1126/science.aea6343\">10.1126/science.aea6343</a>.","ama":"Springstein BL, Javoor M, Megrian D, et al. Repurposing of a DNA segregation machinery into a cytoskeletal system controlling cell shape. <i>Science</i>. 2026;392(6795). doi:<a href=\"https://doi.org/10.1126/science.aea6343\">10.1126/science.aea6343</a>","ista":"Springstein BL, Javoor M, Megrian D, Hajdu R, Hanke DM, Zens B, Weiss GL, Schur FK, Loose M. 2026. Repurposing of a DNA segregation machinery into a cytoskeletal system controlling cell shape. Science. 392(6795), eaea6343."},"day":"16"},{"corr_author":"1","tmp":{"name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","short":"CC BY-NC-ND (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","image":"/images/cc_by_nc_nd.png"},"date_updated":"2026-09-03T09:36:24Z","oa_version":"None","month":"08","page":"121","_id":"22744","acknowledgement":"This work was supported by the ERC StG grant ActinID (PRA01221F1049A) awarded to Florian\r\nSchur, the ERC-SyG grant Pushing from within (P01071793) awarded to Michael Sixt, and by ISTA.\r\nI would like to thank the Scientific Service Units at ISTA for their essential support throughout\r\nthis work. In particular, I am grateful to the Electron Microscopy Facility, Imaging and Optics\r\nFacility, Zebrafish Facility, Scientific Computing Facility, and Lab Support Facility for their services,\r\nand technical support, all of which were important for the successful completion of this project.","year":"2026","doi":"10.15479/AT-ISTA-22744","department":[{"_id":"GradSch"},{"_id":"FlSc"},{"_id":"MiSi"}],"doi_confirm":"1","date_created":"2026-08-21T09:11:04Z","author":[{"first_name":"Manjunath","orcid":"0000-0003-2311-2112","id":"305ab18b-dc7d-11ea-9b2f-b58195228ea2","last_name":"Javoor","full_name":"Javoor, Manjunath"}],"publication_identifier":{"isbn":["978-3-99078-090-9 "],"issn":["2663-337X"]},"degree_awarded":"PhD","article_processing_charge":"No","title":"Large-scale imaging of cellular actin networks at single filament resolution using montage cryo-electron tomography","date_published":"2026-08-21T00:00:00Z","fulldoi":"https://doi.org/10.15479/AT-ISTA-22744","publisher":"Institute of Science and Technology Austria ","ddc":["570"],"type":"dissertation","project":[{"name":"A molecular atlas of Actin filament IDentities in the cell motility machinery","grant_number":"101076260","_id":"bd980d18-d553-11ed-ba76-ceaa645c97eb"},{"name":"Pushing from within: Control of cell shape, integrity and motility by cytoskeletal pushing forces","_id":"bd91e723-d553-11ed-ba76-fe7eeb2185fd","grant_number":"101071793"}],"supervisor":[{"first_name":"Florian KM","orcid":"0000-0003-4790-8078","last_name":"Schur","id":"48AD8942-F248-11E8-B48F-1D18A9856A87","full_name":"Schur, Florian KM"},{"orcid":"0000-0002-6620-9179","first_name":"Michael K","full_name":"Sixt, Michael K","id":"41E9FBEA-F248-11E8-B48F-1D18A9856A87","last_name":"Sixt"}],"status":"public","citation":{"short":"M. Javoor, Large-Scale Imaging of Cellular Actin Networks at Single Filament Resolution Using Montage Cryo-Electron Tomography, Institute of Science and Technology Austria , 2026.","ieee":"M. Javoor, “Large-scale imaging of cellular actin networks at single filament resolution using montage cryo-electron tomography,” Institute of Science and Technology Austria , 2026.","apa":"Javoor, M. (2026). <i>Large-scale imaging of cellular actin networks at single filament resolution using montage cryo-electron tomography</i>. Institute of Science and Technology Austria . <a href=\"https://doi.org/10.15479/AT-ISTA-22744\">https://doi.org/10.15479/AT-ISTA-22744</a>","chicago":"Javoor, Manjunath. “Large-Scale Imaging of Cellular Actin Networks at Single Filament Resolution Using Montage Cryo-Electron Tomography.” Institute of Science and Technology Austria , 2026. <a href=\"https://doi.org/10.15479/AT-ISTA-22744\">https://doi.org/10.15479/AT-ISTA-22744</a>.","mla":"Javoor, Manjunath. <i>Large-Scale Imaging of Cellular Actin Networks at Single Filament Resolution Using Montage Cryo-Electron Tomography</i>. Institute of Science and Technology Austria , 2026, doi:<a href=\"https://doi.org/10.15479/AT-ISTA-22744\">10.15479/AT-ISTA-22744</a>.","ista":"Javoor M. 2026. Large-scale imaging of cellular actin networks at single filament resolution using montage cryo-electron tomography. Institute of Science and Technology Austria .","ama":"Javoor M. Large-scale imaging of cellular actin networks at single filament resolution using montage cryo-electron tomography. 2026. doi:<a href=\"https://doi.org/10.15479/AT-ISTA-22744\">10.15479/AT-ISTA-22744</a>"},"file_date_updated":"2026-08-27T12:48:42Z","day":"21","acknowledged_ssus":[{"_id":"Bio"},{"_id":"EM-Fac"},{"_id":"ScienComp"},{"_id":"LifeSc"}],"alternative_title":["ISTA Thesis"],"has_accepted_license":"1","OA_embargo":"12","file":[{"creator":"mjavoor","access_level":"closed","content_type":"application/vnd.openxmlformats-officedocument.wordprocessingml.document","file_id":"22767","file_name":"2026_Javoor_Manjunath_Thesis.docx","date_updated":"2026-08-27T12:48:42Z","file_size":27430796,"checksum":"f9c2847df9f1ac5a3d60c06b3b81a450","date_created":"2026-08-26T12:02:47Z","relation":"source_file"},{"date_created":"2026-08-26T12:02:46Z","checksum":"8e9b4c0fcafbccf5c3796eacc9134a08","relation":"main_file","embargo_to":"open_access","embargo":"2027-08-21","file_id":"22768","content_type":"application/pdf","creator":"mjavoor","access_level":"closed","file_size":19489230,"date_updated":"2026-08-26T12:02:46Z","file_name":"2026_Javoor_Manjunath_Thesis.pdf"}],"user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","license":"https://creativecommons.org/licenses/by-nc-nd/4.0/","related_material":{"record":[{"status":"public","relation":"part_of_dissertation","id":"12334"},{"relation":"part_of_dissertation","status":"public","id":"21762"},{"id":"19795","status":"public","relation":"part_of_dissertation"},{"status":"public","relation":"part_of_dissertation","id":"12421"}]},"publication_status":"published","OA_place":"publisher","keyword":["Actin cytoskeleton","Cell migration","cryo-electron tomography"],"language":[{"iso":"eng"}]},{"author":[{"first_name":"Rohan P.","full_name":"Naidu, Rohan P.","last_name":"Naidu"},{"full_name":"Matthee, Jorryt J","id":"7439a258-f3c0-11ec-9501-9df22fe06720","last_name":"Matthee","orcid":"0000-0003-2871-127X","first_name":"Jorryt J"},{"first_name":"Harley","full_name":"Katz, Harley","last_name":"Katz"},{"first_name":"Anna","last_name":"De Graaff","full_name":"De Graaff, Anna"},{"first_name":"Pascal A.","last_name":"Oesch","full_name":"Oesch, Pascal A."},{"first_name":"Aaron","full_name":"Smith, Aaron","last_name":"Smith"},{"first_name":"Jenny E.","last_name":"Greene","full_name":"Greene, Jenny E."},{"last_name":"Brammer","full_name":"Brammer, Gabriel","first_name":"Gabriel"},{"first_name":"Andrea","last_name":"Weibel","full_name":"Weibel, Andrea"},{"first_name":"Raphael","last_name":"Hviding","full_name":"Hviding, Raphael"},{"last_name":"Chisholm","full_name":"Chisholm, John","first_name":"John"},{"first_name":"Ivo","full_name":"Labbé, Ivo","last_name":"Labbé"},{"first_name":"Robert A.","last_name":"Simcoe","full_name":"Simcoe, Robert A."},{"full_name":"Witten, Callum","last_name":"Witten","first_name":"Callum"},{"last_name":"Sun","full_name":"Sun, Wendy Q.","first_name":"Wendy Q."},{"first_name":"Hakim","full_name":"Atek, Hakim","last_name":"Atek"},{"full_name":"Baggen, Josephine F.W.","last_name":"Baggen","first_name":"Josephine F.W."},{"first_name":"Sirio","last_name":"Belli","full_name":"Belli, Sirio"},{"first_name":"Rachel","full_name":"Bezanson, Rachel","last_name":"Bezanson"},{"first_name":"Leindert A.","last_name":"Boogaard","full_name":"Boogaard, Leindert A."},{"last_name":"Bose","full_name":"Bose, Sownak","first_name":"Sownak"},{"first_name":"Rychard J.","last_name":"Bouwens","full_name":"Bouwens, Rychard J."},{"full_name":"Covelo-Paz, Alba","last_name":"Covelo-Paz","first_name":"Alba"},{"last_name":"Dayal","full_name":"Dayal, Pratika","first_name":"Pratika"},{"first_name":"Yoshinobu","last_name":"Fudamoto","full_name":"Fudamoto, Yoshinobu"},{"first_name":"Lukas J.","last_name":"Furtak","full_name":"Furtak, Lukas J."},{"full_name":"Giovinazzo, Emma","last_name":"Giovinazzo","first_name":"Emma"},{"first_name":"Andy","full_name":"Goulding, Andy","last_name":"Goulding"},{"full_name":"Gronke, Max","last_name":"Gronke","first_name":"Max"},{"first_name":"Kasper E.","last_name":"Heintz","full_name":"Heintz, Kasper E."},{"first_name":"Michaela","full_name":"Hirschmann, Michaela","last_name":"Hirschmann"},{"last_name":"Illingworth","full_name":"Illingworth, Garth","first_name":"Garth"},{"first_name":"Akio K.","full_name":"Inoue, Akio K.","last_name":"Inoue"},{"last_name":"Johnson","full_name":"Johnson, Benjamin D.","first_name":"Benjamin D."},{"last_name":"Leja","full_name":"Leja, Joel","first_name":"Joel"},{"first_name":"Ecaterina","full_name":"Leonova, Ecaterina","last_name":"Leonova"},{"first_name":"Ian","full_name":"Mcconachie, Ian","last_name":"Mcconachie"},{"full_name":"Maseda, Michael V.","last_name":"Maseda","first_name":"Michael V."},{"full_name":"Natarajan, Priyamvada","last_name":"Natarajan","first_name":"Priyamvada"},{"first_name":"Erica","last_name":"Nelson","full_name":"Nelson, Erica"},{"last_name":"Setton","full_name":"Setton, David J.","first_name":"David J."},{"last_name":"Shivaei","full_name":"Shivaei, Irene","first_name":"Irene"},{"first_name":"David","last_name":"Sobral","full_name":"Sobral, David"},{"first_name":"Mauro","full_name":"Stefanon, Mauro","last_name":"Stefanon"},{"first_name":"Sandro","full_name":"Tacchella, Sandro","last_name":"Tacchella"},{"last_name":"Toft","full_name":"Toft, Sune","first_name":"Sune"},{"full_name":"Torralba Torregrosa, Alberto","last_name":"Torralba Torregrosa","id":"018f0249-0e87-11f0-b167-cbce08fbd541","orcid":"0000-0001-5586-6950","first_name":"Alberto"},{"full_name":"Van Dokkum, Pieter","last_name":"Van Dokkum","first_name":"Pieter"},{"last_name":"Van Der Wel","full_name":"Van Der Wel, Arjen","first_name":"Arjen"},{"first_name":"Marta","last_name":"Volonteri","full_name":"Volonteri, Marta"},{"first_name":"Fabian","last_name":"Walter","full_name":"Walter, Fabian"},{"first_name":"Bingjie","full_name":"Wang, Bingjie","last_name":"Wang"},{"last_name":"Watson","full_name":"Watson, Darach","first_name":"Darach"},{"first_name":"Katherine","full_name":"Whitaker, Katherine","last_name":"Whitaker"}],"date_created":"2026-08-23T22:01:46Z","department":[{"_id":"JoMa"}],"doi":"10.1038/s41586-026-10846-4","year":"2026","acknowledgement":"This work is based on observations made with the NASA/ESA/CSA James Webb Space Telescope. The data were obtained from the Mikulski Archive for Space Telescopes at the Space Telescope Science Institute, which is operated by the Association of Universities for Research in Astronomy, Inc., under NASA contract NAS 5-03127 for JWST. These observations are associated with programs 5224 and 3543. R.P.N. is a NASA Hubble Fellow. D.J.S. is a Brinson Prize Fellow. Some of the data products presented in this study were retrieved from the DJA. DJA is an initiative of the Cosmic Dawn Center (DAWN), which is funded by the Danish National Research Foundation under grant DNRF140. We acknowledge funding from JWST programmes GO-3516, GO-5224 and GO-1837. Support for this work was provided by NASA through the NASA Hubble Fellowship grant HST-HF2-51515.001-A awarded by the Space Telescope Science Institute, which is operated by the Association of Universities for Research in Astronomy, Incorporated, under NASA contract NAS5-26555. Funded by the European Union (ERC AGENTS, 101076224; HEAVYMETAL, 101071865; RED CARDINAL, 101076080). Views and opinions expressed are however those of the author(s) only and do not necessarily reflect those of the European Union or the European Research Council. Neither the European Union nor the granting authority can be held responsible for them. This work has received funding from the Swiss State Secretariat for Education, Research and Innovation (SERI) under contract number MB22.00072, as well as from the Swiss National Science Foundation (SNSF) through project grant 200020_207349. This work was also supported by JSPS KAKENHI grant no. 23H00131. The Cosmic Dawn Center is funded by the Danish National Research Foundation under grant DNRF140. P.N. acknowledges support from the Gordon and Betty Moore Foundation and the John Templeton Foundation that fund the Black Hole Initiative (BHI) at Harvard University, where she serves as an external prinicpal investigator. S. Bose acknowledges funding from a UK Research and Innovation (UKRI) Future Leaders Fellowship (grant no. MR/V023381/1).","_id":"22751","page":"329-333","volume":656,"oa_version":"Published Version","tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"date_updated":"2026-09-07T12:50:34Z","month":"08","PlanS_conform":"1","issue":"8127","type":"journal_article","publication":"Nature","dataavailabilitystatement":"The prism spectra obtained as part of JWST-GO-5224 (MoM) featured in this work are available on Zenodo (https://doi.org/10.5281/zenodo.15059214). All processed images and spectra used in this work are publicly available via the DAWN JWST archive (https://dawn-cph.github.io/dja/). All results presented may be reproduced with the open-access reduced data described above and using the following publicly available software whose use is referenced in the text: msaexp, grizli, astropy, Cloudy, SpectRes, pysersic, COLT and numpyro.","ddc":["520"],"publisher":"Springer Nature","fulldoi":"https://doi.org/10.1038/s41586-026-10846-4","date_published":"2026-08-13T00:00:00Z","article_processing_charge":"Yes (in subscription journal)","das_tickbox":"1","title":"A gas-enshrouded and gas-reddened black hole at cosmic dawn","publication_identifier":{"eissn":["1476-4687"],"issn":["0028-0836"]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","pmid":1,"file":[{"file_id":"22841","content_type":"application/pdf","creator":"dernst","access_level":"open_access","file_size":15134062,"date_updated":"2026-09-07T12:49:32Z","file_name":"2026_Nature_Naidu.pdf","date_created":"2026-09-07T12:49:32Z","checksum":"80127691cb39deb39948c337f6915f7b","relation":"main_file","success":1}],"has_accepted_license":"1","file_date_updated":"2026-09-07T12:49:32Z","day":"13","article_type":"original","status":"public","citation":{"ista":"Naidu RP, Matthee JJ, Katz H, De Graaff A, Oesch PA, Smith A, Greene JE, Brammer G, Weibel A, Hviding R, Chisholm J, Labbé I, Simcoe RA, Witten C, Sun WQ, Atek H, Baggen JFW, Belli S, Bezanson R, Boogaard LA, Bose S, Bouwens RJ, Covelo-Paz A, Dayal P, Fudamoto Y, Furtak LJ, Giovinazzo E, Goulding A, Gronke M, Heintz KE, Hirschmann M, Illingworth G, Inoue AK, Johnson BD, Leja J, Leonova E, Mcconachie I, Maseda MV, Natarajan P, Nelson E, Setton DJ, Shivaei I, Sobral D, Stefanon M, Tacchella S, Toft S, Torralba Torregrosa A, Van Dokkum P, Van Der Wel A, Volonteri M, Walter F, Wang B, Watson D, Whitaker K. 2026. A gas-enshrouded and gas-reddened black hole at cosmic dawn. Nature. 656(8127), 329–333.","ama":"Naidu RP, Matthee JJ, Katz H, et al. A gas-enshrouded and gas-reddened black hole at cosmic dawn. <i>Nature</i>. 2026;656(8127):329-333. doi:<a href=\"https://doi.org/10.1038/s41586-026-10846-4\">10.1038/s41586-026-10846-4</a>","mla":"Naidu, Rohan P., et al. “A Gas-Enshrouded and Gas-Reddened Black Hole at Cosmic Dawn.” <i>Nature</i>, vol. 656, no. 8127, Springer Nature, 2026, pp. 329–33, doi:<a href=\"https://doi.org/10.1038/s41586-026-10846-4\">10.1038/s41586-026-10846-4</a>.","apa":"Naidu, R. P., Matthee, J. J., Katz, H., De Graaff, A., Oesch, P. A., Smith, A., … Whitaker, K. (2026). A gas-enshrouded and gas-reddened black hole at cosmic dawn. <i>Nature</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41586-026-10846-4\">https://doi.org/10.1038/s41586-026-10846-4</a>","chicago":"Naidu, Rohan P., Jorryt J Matthee, Harley Katz, Anna De Graaff, Pascal A. Oesch, Aaron Smith, Jenny E. Greene, et al. “A Gas-Enshrouded and Gas-Reddened Black Hole at Cosmic Dawn.” <i>Nature</i>. Springer Nature, 2026. <a href=\"https://doi.org/10.1038/s41586-026-10846-4\">https://doi.org/10.1038/s41586-026-10846-4</a>.","short":"R.P. Naidu, J.J. Matthee, H. Katz, A. De Graaff, P.A. Oesch, A. Smith, J.E. Greene, G. Brammer, A. Weibel, R. Hviding, J. Chisholm, I. Labbé, R.A. Simcoe, C. Witten, W.Q. Sun, H. Atek, J.F.W. Baggen, S. Belli, R. Bezanson, L.A. Boogaard, S. Bose, R.J. Bouwens, A. Covelo-Paz, P. Dayal, Y. Fudamoto, L.J. Furtak, E. Giovinazzo, A. Goulding, M. Gronke, K.E. Heintz, M. Hirschmann, G. Illingworth, A.K. Inoue, B.D. Johnson, J. Leja, E. Leonova, I. Mcconachie, M.V. Maseda, P. Natarajan, E. Nelson, D.J. Setton, I. Shivaei, D. Sobral, M. Stefanon, S. Tacchella, S. Toft, A. Torralba Torregrosa, P. Van Dokkum, A. Van Der Wel, M. Volonteri, F. Walter, B. Wang, D. Watson, K. Whitaker, Nature 656 (2026) 329–333.","ieee":"R. P. Naidu <i>et al.</i>, “A gas-enshrouded and gas-reddened black hole at cosmic dawn,” <i>Nature</i>, vol. 656, no. 8127. Springer Nature, pp. 329–333, 2026."},"oa":1,"external_id":{"pmid":["42587117"]},"language":[{"iso":"eng"}],"quality_controlled":"1","scopus_import":"1","supplementarymaterial":"yes","OA_place":"publisher","publication_status":"published","researchdata_availability":"yes","abstract":[{"lang":"eng","text":"The physical processes that led to the formation of billion-solar-mass black holes within the first 700 million years of cosmic time, a period known as cosmic dawn, remain a puzzle1. Several theoretical scenarios have been proposed to seed and rapidly grow black holes2,3,4, but direct observations of these mechanisms remain elusive. Here we present a source 660 million years after the Big Bang that exhibits singular properties: among the largest hydrogen Balmer breaks reported at any redshift, broad multi-peaked Hβ emission, and Balmer line absorption in several transitions. We model this source as an enshrouded black hole in which the Balmer break and absorption features are a result of extremely dense, turbulent gas forming a dust-free envelope around a supermassive black hole5,6. This source may provide evidence of an early black hole embedded in dense gas—a theoretical configuration proposed to rapidly grow black holes by super-Eddington accretion7,8. Radiation from the black hole seems to dominate almost all observed light, leaving limited room for contribution from its host galaxy. If the source merged with its brighter neighbour, it would resemble the recently discovered ‘little red dots’ with perplexing spectral energy distributions9,10,11. The redness of the black hole is due to gas, not dust12,13, and scattering, not kinematics, gives rise to the complex line shapes and luminosities—black hole masses of these sources may therefore be overestimated by orders of magnitude."}],"OA_type":"hybrid","intvolume":"       656"},{"doi":"10.1038/s41467-026-75324-x","department":[{"_id":"LeSa"}],"acknowledgement":"P.J.N. is grateful for the support from the Imperial College Electron Microscopy Center. L.A.S. acknowledges the support from the Scientific Service Units (SSU) of IST Austria: the Electron Microscopy Facility (EMF), the Life Science Facility (LSF) and the IST high-performance computing cluster. P.J.N. is grateful for the support of the Biotechnology & Biological Sciences Research Council (awards BB/I00937X/1, BB/L003260/1 and BB/P00931X/1). L.A.S. is grateful to IST Austria for providing the funding.","year":"2026","author":[{"first_name":"Ziyu","full_name":"Zhao, Ziyu","last_name":"Zhao","id":"a63fe682-9f3a-11ee-bf8c-cfdf919b9850"},{"full_name":"Vercellino, Irene","last_name":"Vercellino","id":"3ED6AF16-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5618-3449","first_name":"Irene"},{"first_name":"Julian P.","last_name":"Whitelegge","full_name":"Whitelegge, Julian P."},{"full_name":"Maghlaoui, Karim","last_name":"Maghlaoui","first_name":"Karim"},{"first_name":"Wojciech","last_name":"Białek","full_name":"Białek, Wojciech"},{"first_name":"Peter J.","full_name":"Nixon, Peter J.","last_name":"Nixon"},{"last_name":"Sazanov","id":"338D39FE-F248-11E8-B48F-1D18A9856A87","full_name":"Sazanov, Leonid A","first_name":"Leonid A","orcid":"0000-0002-0977-7989"}],"date_created":"2026-08-23T22:01:46Z","oa_version":"Published Version","tmp":{"name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","short":"CC BY-NC-ND (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","image":"/images/cc_by_nc_nd.png"},"month":"08","date_updated":"2026-09-07T13:17:53Z","corr_author":"1","_id":"22750","volume":17,"type":"journal_article","DOAJ_listed":"1","publication":"Nature Communications","publication_identifier":{"eissn":["2041-1723"]},"article_processing_charge":"Yes","title":"Cryo-EM structures of naturally occurring dimeric photosystem II complexes lacking the Mn4CaO5 cluster","das_tickbox":"1","ddc":["570"],"publisher":"Springer Nature","dataavailabilitystatement":"The cryo-EM maps are deposited in the Electron Microscopy Data Bank under accession number EMD- 51100 (inactive dimer), EMD- 51102 (active dimer) and EMD-51101 (semi-active dimer). The models are deposited in the Protein Data Bank under accession numbers 9G6F (inactive dimer), 9G6H (active dimer) and 9G6G (semi-active dimer). Mass spectrometry data was uploaded to MassIVE with accession code MSV000101057. Source data are provided with this paper.","date_published":"2026-08-17T00:00:00Z","fulldoi":"https://doi.org/10.1038/s41467-026-75324-x","has_accepted_license":"1","pmid":1,"article_number":"8433","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file":[{"content_type":"application/pdf","file_id":"22843","creator":"dernst","access_level":"open_access","file_size":3370665,"date_updated":"2026-09-07T13:13:03Z","file_name":"2026_NatureComm_Zhao.pdf","date_created":"2026-09-07T13:13:03Z","checksum":"a820b736585de22bcfa30ebdd25a6dd2","relation":"main_file","success":1}],"day":"17","file_date_updated":"2026-09-07T13:13:03Z","citation":{"chicago":"Zhao, Ziyu, Irene Vercellino, Julian P. Whitelegge, Karim Maghlaoui, Wojciech Białek, Peter J. Nixon, and Leonid A Sazanov. “Cryo-EM Structures of Naturally Occurring Dimeric Photosystem II Complexes Lacking the Mn4CaO5 Cluster.” <i>Nature Communications</i>. Springer Nature, 2026. <a href=\"https://doi.org/10.1038/s41467-026-75324-x\">https://doi.org/10.1038/s41467-026-75324-x</a>.","apa":"Zhao, Z., Vercellino, I., Whitelegge, J. P., Maghlaoui, K., Białek, W., Nixon, P. J., &#38; Sazanov, L. A. (2026). Cryo-EM structures of naturally occurring dimeric photosystem II complexes lacking the Mn4CaO5 cluster. <i>Nature Communications</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41467-026-75324-x\">https://doi.org/10.1038/s41467-026-75324-x</a>","short":"Z. Zhao, I. Vercellino, J.P. Whitelegge, K. Maghlaoui, W. Białek, P.J. Nixon, L.A. Sazanov, Nature Communications 17 (2026).","ieee":"Z. Zhao <i>et al.</i>, “Cryo-EM structures of naturally occurring dimeric photosystem II complexes lacking the Mn4CaO5 cluster,” <i>Nature Communications</i>, vol. 17. Springer Nature, 2026.","ista":"Zhao Z, Vercellino I, Whitelegge JP, Maghlaoui K, Białek W, Nixon PJ, Sazanov LA. 2026. Cryo-EM structures of naturally occurring dimeric photosystem II complexes lacking the Mn4CaO5 cluster. Nature Communications. 17, 8433.","ama":"Zhao Z, Vercellino I, Whitelegge JP, et al. Cryo-EM structures of naturally occurring dimeric photosystem II complexes lacking the Mn4CaO5 cluster. <i>Nature Communications</i>. 2026;17. doi:<a href=\"https://doi.org/10.1038/s41467-026-75324-x\">10.1038/s41467-026-75324-x</a>","mla":"Zhao, Ziyu, et al. “Cryo-EM Structures of Naturally Occurring Dimeric Photosystem II Complexes Lacking the Mn4CaO5 Cluster.” <i>Nature Communications</i>, vol. 17, 8433, Springer Nature, 2026, doi:<a href=\"https://doi.org/10.1038/s41467-026-75324-x\">10.1038/s41467-026-75324-x</a>."},"status":"public","article_type":"original","acknowledged_ssus":[{"_id":"EM-Fac"},{"_id":"LifeSc"},{"_id":"ScienComp"}],"OA_place":"publisher","publication_status":"published","language":[{"iso":"eng"}],"external_id":{"pmid":["42420307"]},"oa":1,"supplementarymaterial":"yes","quality_controlled":"1","scopus_import":"1","abstract":[{"lang":"eng","text":"Robust oxygenic photosynthesis requires the efficient assembly and repair of the multi-subunit oxygen-evolving photosystem II (PSII) complex. Previous cryogenic electron microscopy (cryo-EM) structures of PSII assembly/disassembly intermediates have relied on the analysis of deletion mutants or removal of PSII subunits in vitro. Here we report the cryo-EM structures of naturally occurring dimeric PSII intermediates from the cyanobacterium Thermosynechococcus vestitus at a resolution of about 2.2 Å. These intermediates contain inactive dimers lacking the oxygen-evolving complex (OEC) and semi-active dimers with the OEC present in one of the two monomers. Our structural data provide a mechanism for how assembly and disassembly of the Mn4CaO5 cluster is coordinated with the binding and release of the extrinsic proteins: restructuring of the C-terminal tail of D1 subunit during assembly or disassembly of the Mn cluster triggers conformational changes in D2, CP47 and CP43 to drive the binding/release of the extrinsic proteins. A combination of structural and mass spectrometry data also suggests that the inactive PSII complexes may include damaged complexes containing oxidized D1-His332, a monodentate ligand to one of the Mn ions of the OEC."}],"intvolume":"        17","OA_type":"gold","researchdata_availability":"yes"},{"mathsc":["05C80","60F05"],"publication":"Bulletin of the London Mathematical Society","issue":"8","type":"journal_article","project":[{"grant_number":"ESP3863424","_id":"8f906bd2-16d5-11f0-9cad-e07be8aa9ac9","name":"Combinatorial Optimisation Problems on Sparse Random Graphs"}],"article_processing_charge":"Yes (in subscription journal)","das_tickbox":"0","title":"A short proof of a central limit theorem for the order of the giant component and k-core","publication_identifier":{"eissn":["1469-2120"],"issn":["0024-6093"]},"fulldoi":"https://doi.org/10.1112/blms.70464","date_published":"2026-08-01T00:00:00Z","ddc":["510"],"publisher":"Wiley","year":"2026","acknowledgement":"This research was funded in whole or in part by the Austrian Science Fund (FWF) [10.55776/P36131 (Joshua Erde), 10.55776/I6502 (Mihyun Kang), 10.55776/ESP3863424 (Michael Anastos)] and by the Swiss National Science Foundation (SNSF) [P500-2_235474] (Vincent Pfenninger). For open access purposes, the authors have applied a CC BY public copyright license to any author accepted manuscript version arising from this submission. The authors thank the reviewers for helpful comments on the paper, and for bringing the particular form of Theorem 2.2 to our attention.","department":[{"_id":"MaKw"}],"doi":"10.1112/blms.70464","date_created":"2026-08-23T22:01:47Z","author":[{"full_name":"Anastos, Michael","id":"0b2a4358-bb35-11ec-b7b9-e3279b593dbb","last_name":"Anastos","first_name":"Michael"},{"last_name":"Erde","full_name":"Erde, Joshua","first_name":"Joshua"},{"last_name":"Kang","full_name":"Kang, Mihyun","first_name":"Mihyun"},{"full_name":"Pfenninger, Vincent","last_name":"Pfenninger","first_name":"Vincent"}],"tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"month":"08","PlanS_conform":"1","date_updated":"2026-09-07T13:56:17Z","oa_version":"Published Version","volume":58,"_id":"22752","publication_status":"published","OA_place":"publisher","scopus_import":"1","quality_controlled":"1","supplementarymaterial":"no","oa":1,"external_id":{"arxiv":["2506.11651"]},"language":[{"iso":"eng"}],"OA_type":"hybrid","intvolume":"        58","abstract":[{"text":"In this note we outline a new and simple approach to proving central limit theorems for various ‘global’ graph parameters that have robust ‘local’ approximations, using the Efron–Stein inequality, which relies on a combinatorial analysis of the stability of these approximations under resampling an edge. As an application, we give short proofs of a central limit theorem for the order of the giant component and of the 𝑘\r\n-core for sparse random graphs.","lang":"eng"}],"researchdata_availability":"no","has_accepted_license":"1","file":[{"checksum":"b4b21f05c3fc62fde243a5ddd46cef49","date_created":"2026-09-07T13:53:26Z","success":1,"relation":"main_file","creator":"dernst","access_level":"open_access","content_type":"application/pdf","file_id":"22845","date_updated":"2026-09-07T13:53:26Z","file_name":"2026_BulletinLondonMathSoc_Anastos.pdf","file_size":248641}],"arxiv":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_number":"e70464","article_type":"original","citation":{"apa":"Anastos, M., Erde, J., Kang, M., &#38; Pfenninger, V. (2026). A short proof of a central limit theorem for the order of the giant component and k-core. <i>Bulletin of the London Mathematical Society</i>. Wiley. <a href=\"https://doi.org/10.1112/blms.70464\">https://doi.org/10.1112/blms.70464</a>","chicago":"Anastos, Michael, Joshua Erde, Mihyun Kang, and Vincent Pfenninger. “A Short Proof of a Central Limit Theorem for the Order of the Giant Component and K-Core.” <i>Bulletin of the London Mathematical Society</i>. Wiley, 2026. <a href=\"https://doi.org/10.1112/blms.70464\">https://doi.org/10.1112/blms.70464</a>.","ieee":"M. Anastos, J. Erde, M. Kang, and V. Pfenninger, “A short proof of a central limit theorem for the order of the giant component and k-core,” <i>Bulletin of the London Mathematical Society</i>, vol. 58, no. 8. Wiley, 2026.","short":"M. Anastos, J. Erde, M. Kang, V. Pfenninger, Bulletin of the London Mathematical Society 58 (2026).","ama":"Anastos M, Erde J, Kang M, Pfenninger V. A short proof of a central limit theorem for the order of the giant component and k-core. <i>Bulletin of the London Mathematical Society</i>. 2026;58(8). doi:<a href=\"https://doi.org/10.1112/blms.70464\">10.1112/blms.70464</a>","ista":"Anastos M, Erde J, Kang M, Pfenninger V. 2026. A short proof of a central limit theorem for the order of the giant component and k-core. Bulletin of the London Mathematical Society. 58(8), e70464.","mla":"Anastos, Michael, et al. “A Short Proof of a Central Limit Theorem for the Order of the Giant Component and K-Core.” <i>Bulletin of the London Mathematical Society</i>, vol. 58, no. 8, e70464, Wiley, 2026, doi:<a href=\"https://doi.org/10.1112/blms.70464\">10.1112/blms.70464</a>."},"status":"public","day":"01","file_date_updated":"2026-09-07T13:53:26Z"},{"license":"https://creativecommons.org/licenses/by-nc-sa/4.0/","abstract":[{"lang":"eng","text":"The widespread adoption of apps like Whatsapp and Signal has translated into billions of people all around the world communicating on a regular basis by making use of services that offer end-to-end encryption and even provide security guarantees when a user's device is compromised.\r\n\r\nThis was made possible by the introduction of the Double Ratchet Algorithm~\\cite{double_ratchet}, which was designed for a setting where communication takes place between two parties.\r\nHowever, in practice, many apps offer the possibility of creating groups.\r\nThe protocols they use to secure communication are inefficient for large group which has the undesireable consequence that the aforementioned apps have established limits on the group size of roughly 1000 users.\r\nThis has motivated the introduction of the Messaging Layer Security (MLS) standard~\\cite{rfc9420} by the IETF which is based on a primitive called Continuous Group Key Agreement (CGKA)~\\cite{C:ACDT20}.\r\n\r\nThis primitive allows a group of users to maintain a shared secret key that is frequently rotated by the group members in order to change group membership, achieve forward secrecy (FS) and post compromise security (PCS).\r\nMost protocols are based on binary trees where the nodes are associated to a pair formed by public key and a secret key.\r\nEach leaf corresponds to one of the group members and a user knows the secret keys associated to nodes along the path from their leaf to the root.\r\nWhen a user wants to update their key material they have to change $ \\log(N) $ many keys.\r\nThis requires uploading $ \\log(N) $ many ciphertexts to communicate the new keys to the rest of the group members in a way that respects the tree structure.\r\n\r\nIn this thesis we study how much communication between group members is required in order to add and remove users from a group as well as in order to provide PCS when we consider CGKAs built using standard cryptographic primitives like pseudo-random functions and public-key encryption. Furthermore, we also consider the case of MLS and provide the first lower bound showing that its communication complexity is much worse than previously believed, i.e., it is very far from $ \\log(N) $.\r\nFinally, we also propose a variant of MLS which provably achieves the same security properties with a much lower communication cost."}],"related_material":{"record":[{"status":"public","relation":"part_of_dissertation","id":"21262"},{"relation":"part_of_dissertation","status":"public","id":"14691"},{"id":"18702","relation":"part_of_dissertation","status":"public"}]},"publication_status":"published","OA_place":"publisher","oa":1,"language":[{"iso":"eng"}],"citation":{"chicago":"Cueto Noval, Miguel. “Towards Efficient Secure Group Messaging.” Institute of Science and Technology Austria, 2026. <a href=\"https://doi.org/10.15479/AT-ISTA-22664\">https://doi.org/10.15479/AT-ISTA-22664</a>.","apa":"Cueto Noval, M. (2026). <i>Towards efficient secure group messaging</i>. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT-ISTA-22664\">https://doi.org/10.15479/AT-ISTA-22664</a>","ieee":"M. Cueto Noval, “Towards efficient secure group messaging,” Institute of Science and Technology Austria, 2026.","short":"M. Cueto Noval, Towards Efficient Secure Group Messaging, Institute of Science and Technology Austria, 2026.","ama":"Cueto Noval M. Towards efficient secure group messaging. 2026. doi:<a href=\"https://doi.org/10.15479/AT-ISTA-22664\">10.15479/AT-ISTA-22664</a>","ista":"Cueto Noval M. 2026. Towards efficient secure group messaging. Institute of Science and Technology Austria.","mla":"Cueto Noval, Miguel. <i>Towards Efficient Secure Group Messaging</i>. Institute of Science and Technology Austria, 2026, doi:<a href=\"https://doi.org/10.15479/AT-ISTA-22664\">10.15479/AT-ISTA-22664</a>."},"status":"public","day":"10","file_date_updated":"2026-08-19T11:36:46Z","has_accepted_license":"1","alternative_title":["ISTA Thesis"],"file":[{"relation":"main_file","date_created":"2026-08-13T09:39:00Z","checksum":"d61beeb9a250a04396c2c61bbd0783aa","file_size":1390255,"file_name":"2026_CuetoNoval_Miguel_Thesis.pdf","date_updated":"2026-08-19T11:36:46Z","content_type":"application/pdf","file_id":"22702","access_level":"open_access","creator":"mcuetono"},{"relation":"source_file","checksum":"4d6def422cc93a108faf5e5defc0f807","date_created":"2026-08-13T09:39:01Z","file_name":"2026_CuetoNoval_Miguel_Thesis.zip","date_updated":"2026-08-14T10:26:06Z","file_size":9923509,"creator":"mcuetono","access_level":"closed","file_id":"22703","content_type":"application/zip"}],"user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","title":"Towards efficient secure group messaging","article_processing_charge":"No","publication_identifier":{"issn":["2663-337X"],"isbn":[" 978-3-99078-087-9"]},"degree_awarded":"PhD","fulldoi":"https://doi.org/10.15479/AT-ISTA-22664","date_published":"2026-08-10T00:00:00Z","ddc":["000"],"publisher":"Institute of Science and Technology Austria","type":"dissertation","supervisor":[{"orcid":"0000-0002-9139-1654","first_name":"Krzysztof Z","full_name":"Pietrzak, Krzysztof Z","id":"3E04A7AA-F248-11E8-B48F-1D18A9856A87","last_name":"Pietrzak"}],"corr_author":"1","tmp":{"short":"CC BY-NC-SA (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode","image":"/images/cc_by_nc_sa.png","name":"Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)"},"month":"08","oa_version":"Published Version","date_updated":"2026-09-07T14:12:39Z","page":"187","_id":"22664","year":"2026","department":[{"_id":"GradSch"},{"_id":"KrPi"}],"doi":"10.15479/AT-ISTA-22664","doi_confirm":"1","date_created":"2026-08-10T10:18:35Z","author":[{"id":"ffc563a3-f6e0-11ea-865d-e3cce03d17cc","last_name":"Cueto Noval","full_name":"Cueto Noval, Miguel","first_name":"Miguel","orcid":"0000-0002-2505-4246"}]},{"researchdata_availability":"yes","abstract":[{"text":"Quantitative automata (QAs) extend finite-state automata on infinite words with weighted transitions to specify quantitative system properties. However, their finite weight sets rule out properties like average response time, where response times can be arbitrarily large. Nested quantitative automata (NQAs) overcome this limitation: a parent automaton spawns child automata to compute unbounded values over finite infixes and aggregates them into a final result. Despite this expressiveness, NQAs have lacked practical tool support to date.\r\n\r\nWe close this gap by extending the Quantitative Automata Kit (QuAK), a software tool for QA analysis, to support NQAs. Our core contribution is implementing a suite of flattening procedures that reduce NQAs to QAs, leveraging QuAK’s existing decision procedures. These reductions preserve the answers to threshold decision problems, while allowing users to specify properties in the more expressive NQA formalism. The tool handles all combinations of parent aggregators (including limits and averages) and child functions (extrema and monotonic or bounded summations) for which emptiness and universality are known to be decidable. Experiments on response-time and resource-consumption benchmarks demonstrate QuAK’s effectiveness.","lang":"eng"}],"intvolume":"     16683","OA_type":"hybrid","language":[{"iso":"eng"}],"external_id":{"arxiv":["2605.12418"]},"oa":1,"supplementarymaterial":"no","scopus_import":"1","quality_controlled":"1","OA_place":"publisher","publication_status":"published","file_date_updated":"2026-09-09T06:33:55Z","day":"01","citation":{"ieee":"T. A. Henzinger, N. A. Mazzocchi, N. E. Sarac, and H. Yılmaz, “Extending QuAK with nested quantitative automata,” in <i>38th International Conference on Computer Aided Verification</i>, Lisbon, Portugal, 2026, vol. 16683, pp. 418–432.","short":"T.A. Henzinger, N.A. Mazzocchi, N.E. Sarac, H. Yılmaz, in:, 38th International Conference on Computer Aided Verification, Springer Nature, 2026, pp. 418–432.","apa":"Henzinger, T. A., Mazzocchi, N. A., Sarac, N. E., &#38; Yılmaz, H. (2026). Extending QuAK with nested quantitative automata. In <i>38th International Conference on Computer Aided Verification</i> (Vol. 16683, pp. 418–432). Lisbon, Portugal: Springer Nature. <a href=\"https://doi.org/10.1007/978-3-032-32526-6_20\">https://doi.org/10.1007/978-3-032-32526-6_20</a>","chicago":"Henzinger, Thomas A, Nicolas Adrien Mazzocchi, Naci E Sarac, and Harun Yılmaz. “Extending QuAK with Nested Quantitative Automata.” In <i>38th International Conference on Computer Aided Verification</i>, 16683:418–32. Springer Nature, 2026. <a href=\"https://doi.org/10.1007/978-3-032-32526-6_20\">https://doi.org/10.1007/978-3-032-32526-6_20</a>.","mla":"Henzinger, Thomas A., et al. “Extending QuAK with Nested Quantitative Automata.” <i>38th International Conference on Computer Aided Verification</i>, vol. 16683, Springer Nature, 2026, pp. 418–32, doi:<a href=\"https://doi.org/10.1007/978-3-032-32526-6_20\">10.1007/978-3-032-32526-6_20</a>.","ama":"Henzinger TA, Mazzocchi NA, Sarac NE, Yılmaz H. Extending QuAK with nested quantitative automata. In: <i>38th International Conference on Computer Aided Verification</i>. Vol 16683. Springer Nature; 2026:418-432. doi:<a href=\"https://doi.org/10.1007/978-3-032-32526-6_20\">10.1007/978-3-032-32526-6_20</a>","ista":"Henzinger TA, Mazzocchi NA, Sarac NE, Yılmaz H. 2026. Extending QuAK with nested quantitative automata. 38th International Conference on Computer Aided Verification. CAV: Computer Aided Verification, LNCS, vol. 16683, 418–432."},"status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","arxiv":1,"file":[{"content_type":"application/pdf","file_id":"22861","access_level":"open_access","creator":"dernst","file_size":425988,"file_name":"2026_LNCS_HenzingerT.pdf","date_updated":"2026-09-09T06:33:55Z","date_created":"2026-09-09T06:33:55Z","checksum":"043ba7b83f28d036d5a0e6e70a52cc9a","relation":"main_file","success":1}],"ec_funded":1,"alternative_title":["LNCS"],"has_accepted_license":"1","ddc":["000"],"publisher":"Springer Nature","dataavailabilitystatement":"The artifact supporting the experimental results in this paper is available in the QuAK repository at https://github.com/ista-vamos/nested-quak. It contains the extended QuAK implementation, benchmark generators, example inputs, and scripts/logs for reproducing the reported tables. The artifact is intended to reproduce the experiments under the setup described in Sect. 4; runtimes may vary across machines, and the reported timeout and memory-exhaustion results depend on the stated hardware limits. No sensitive or restricted data are used. An archived version is available on Zenodo at DOI: http://doi.org/10.5281/zenodo.19844606.","date_published":"2026-01-01T00:00:00Z","fulldoi":"https://doi.org/10.1007/978-3-032-32526-6_20","publication_identifier":{"issn":["0302-9743"],"eissn":["1611-3349"],"isbn":["9783032325259"]},"title":"Extending QuAK with nested quantitative automata","article_processing_charge":"No","das_tickbox":"1","project":[{"name":"Vigilant Algorithmic Monitoring of Software","call_identifier":"H2020","grant_number":"101020093","_id":"62781420-2b32-11ec-9570-8d9b63373d4d"}],"type":"conference","publication":"38th International Conference on Computer Aided Verification","conference":{"location":"Lisbon, Portugal","start_date":"2026-07-26","name":"CAV: Computer Aided Verification","end_date":"2026-07-29"},"_id":"22754","volume":16683,"page":"418-432","tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"month":"01","date_updated":"2026-09-09T06:37:41Z","oa_version":"Published Version","author":[{"orcid":"0000-0002-2985-7724","first_name":"Thomas A","full_name":"Henzinger, Thomas A","id":"40876CD8-F248-11E8-B48F-1D18A9856A87","last_name":"Henzinger"},{"first_name":"Nicolas Adrien","full_name":"Mazzocchi, Nicolas Adrien","id":"b26baa86-3308-11ec-87b0-8990f34baa85","last_name":"Mazzocchi"},{"last_name":"Sarac","id":"8C6B42F8-C8E6-11E9-A03A-F2DCE5697425","full_name":"Sarac, Naci E","first_name":"Naci E"},{"last_name":"Yılmaz","full_name":"Yılmaz, Harun","first_name":"Harun"}],"date_created":"2026-08-23T22:01:47Z","doi":"10.1007/978-3-032-32526-6_20","department":[{"_id":"ToHe"}],"acknowledgement":"This work was supported by the European Research Council (ERC) Grants VAMOS (No. 101020093) and HYPER (No. 101055412).","year":"2026"},{"publication":"Physical Review X","DOAJ_listed":"1","type":"journal_article","issue":"3","publication_identifier":{"issn":["2160-3308"]},"das_tickbox":"1","article_processing_charge":"Yes","title":"Eigenstate thermalization in thermal first-order phase transitions","date_published":"2026-08-18T00:00:00Z","fulldoi":"https://doi.org/10.1103/4zs8-7kf4","publisher":"American Physical Society","ddc":["530"],"dataavailabilitystatement":"There are no publicly available research data or software supporting this manuscript. Requests for further information or data should be sent to the authors.","acknowledgement":"A. A. acknowledges discussions and prior collaboration on related topics with Anatoly Dymarsky. M. S. acknowledges Ashwin Vishwanath for introducing him to the idea of thermal first-order phase transitions in quantum systems. This research was supported in part by Grant No. NSF PHY-2309135 to the Kavli Institute for Theoretical Physics (KITP) and by the Erwin Schrödinger International Institute for Mathematics and Physics (ESI). O. K. D. acknowledges support from the NSF through a grant for ITAMP at Harvard University. D. A. H. was supported in part by NSF QLCI Grant No. OMA-2120757.","year":"2026","doi":"10.1103/4zs8-7kf4","department":[{"_id":"MaSe"}],"date_created":"2026-08-24T06:57:25Z","author":[{"orcid":"0000-0002-2399-5827","first_name":"Maksym","full_name":"Serbyn, Maksym","id":"47809E7E-F248-11E8-B48F-1D18A9856A87","last_name":"Serbyn"},{"full_name":"Avdoshkin, Alexander","last_name":"Avdoshkin","first_name":"Alexander"},{"last_name":"Diessel","full_name":"Diessel, Oriana K.","first_name":"Oriana K."},{"first_name":"David A.","full_name":"Huse, David A.","last_name":"Huse"}],"corr_author":"1","date_updated":"2026-09-09T07:01:47Z","tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"month":"08","PlanS_conform":"1","oa_version":"Published Version","volume":16,"_id":"22755","publication_status":"published","OA_place":"publisher","supplementarymaterial":"yes","quality_controlled":"1","scopus_import":"1","external_id":{"arxiv":["2601.08347"]},"language":[{"iso":"eng"}],"oa":1,"intvolume":"        16","OA_type":"gold","abstract":[{"text":"The eigenstate thermalization hypothesis (ETH) posits how isolated quantum many-body systems thermalize, assuming that individual eigenstates at the same energy density have identical expectation values of local observables in the limit of large systems. While the ETH apparently holds across a wide range of interacting quantum systems, in this work, we show that it may require generalization in the presence of thermal first-order phase transitions. We introduce a class of all-to-all spin models, featuring first-order thermal phase transitions that stem from two distinct local maxima of entropy (two mean-field solutions that we dub “branches”) that exchange dominance in the many-body density of states as the energy is varied. We argue that, for energies in the vicinity of the thermal phase transition, eigenstate expectation values do not need to converge to the same thermal value. The system has a regime with coexistence of two classes of eigenstates corresponding to the two branches with distinct expectation values at the same energy density and another regime with Schrödinger-cat-like eigenstates that are interbranch superpositions; these two regimes are separated by an eigenstate phase transition. We propose a more general form of the ETH , support our results by semiclassical calculations and an exact diagonalization study of a microscopic spin model, and argue that the structure of eigenstates in the vicinity of thermal first-order phase transitions can be experimentally probed via nonequilibrium dynamics.","lang":"eng"}],"researchdata_availability":"upon request","has_accepted_license":"1","arxiv":1,"file":[{"content_type":"application/pdf","file_id":"22862","access_level":"open_access","creator":"dernst","file_size":2537492,"file_name":"2026_PhysicalReviewX_Serbyn.pdf","date_updated":"2026-09-09T07:00:24Z","date_created":"2026-09-09T07:00:24Z","checksum":"8bf0d88f17783dc1e6bf4c754534d734","success":1,"relation":"main_file"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_number":"031042","citation":{"mla":"Serbyn, Maksym, et al. “Eigenstate Thermalization in Thermal First-Order Phase Transitions.” <i>Physical Review X</i>, vol. 16, no. 3, 031042, American Physical Society, 2026, doi:<a href=\"https://doi.org/10.1103/4zs8-7kf4\">10.1103/4zs8-7kf4</a>.","ista":"Serbyn M, Avdoshkin A, Diessel OK, Huse DA. 2026. Eigenstate thermalization in thermal first-order phase transitions. Physical Review X. 16(3), 031042.","ama":"Serbyn M, Avdoshkin A, Diessel OK, Huse DA. Eigenstate thermalization in thermal first-order phase transitions. <i>Physical Review X</i>. 2026;16(3). doi:<a href=\"https://doi.org/10.1103/4zs8-7kf4\">10.1103/4zs8-7kf4</a>","short":"M. Serbyn, A. Avdoshkin, O.K. Diessel, D.A. Huse, Physical Review X 16 (2026).","ieee":"M. Serbyn, A. Avdoshkin, O. K. Diessel, and D. A. Huse, “Eigenstate thermalization in thermal first-order phase transitions,” <i>Physical Review X</i>, vol. 16, no. 3. American Physical Society, 2026.","chicago":"Serbyn, Maksym, Alexander Avdoshkin, Oriana K. Diessel, and David A. Huse. “Eigenstate Thermalization in Thermal First-Order Phase Transitions.” <i>Physical Review X</i>. American Physical Society, 2026. <a href=\"https://doi.org/10.1103/4zs8-7kf4\">https://doi.org/10.1103/4zs8-7kf4</a>.","apa":"Serbyn, M., Avdoshkin, A., Diessel, O. K., &#38; Huse, D. A. (2026). Eigenstate thermalization in thermal first-order phase transitions. <i>Physical Review X</i>. American Physical Society. <a href=\"https://doi.org/10.1103/4zs8-7kf4\">https://doi.org/10.1103/4zs8-7kf4</a>"},"status":"public","article_type":"original","file_date_updated":"2026-09-09T07:00:24Z","day":"18"},{"doi":"10.1038/s41586-026-10916-7","department":[{"_id":"SiHi"}],"acknowledgement":"We thank M. L. de Guevara, S. Jayaram and A. Heger for technical assistance with mESC derivation; M. Goudarzi for assistance with organoid imaging; M. Leeb and F. Freeman for advice in culturing mESCs and organoids; S. Gobeil and L. Sweeney for reagents and advice for organoid clearing; A. Heger for mouse colony management; J. Hauser for technical assistance; the Stanford Brain Organogenesis Workshop; and all members of the Hippenmeyer laboratory for discussion and/or comments on the manuscript. This study was supported by the Scientific Service Units (SSU) of the Institute of Science and Technology, Austria through resources provided by the Imaging and Optics Facility (IOF), Laboratory Support Facility (LSF) and Preclinical Facility (PCF). M.S. received funding from the European Commission (IST plus postdoctoral fellowship). This work was supported by ISTA institutional funds to S.H., FWF SFB F78 Neuro Stem Modulation to S.H., and by the European Research Council (ERC) under the European Union’s Horizon 2020 Research And Innovation Program (grant agreement 725780 LinPro) to S.H. Open access funding provided by Institute of Science and Technology (IST Austria).","year":"2026","author":[{"first_name":"Melissa A","id":"4C9372C4-F248-11E8-B48F-1D18A9856A87","last_name":"Stouffer","full_name":"Stouffer, Melissa A"},{"last_name":"Miranda","id":"862A3C56-A8BF-11E9-B4FA-D9E3E5697425","full_name":"Miranda, Osvaldo","first_name":"Osvaldo","orcid":"0000-0001-6618-6889"},{"id":"48EA0138-F248-11E8-B48F-1D18A9856A87","last_name":"Pauler","full_name":"Pauler, Florian","first_name":"Florian","orcid":"0000-0002-7462-0048"},{"id":"649134fd-d012-11ed-8f82-db1e5050f9ba","last_name":"Pipicelli","full_name":"Pipicelli, Fabrizia","first_name":"Fabrizia"},{"full_name":"Streicher, Carmen","id":"36BCB99C-F248-11E8-B48F-1D18A9856A87","last_name":"Streicher","first_name":"Carmen"},{"last_name":"Cheung","id":"471195F6-F248-11E8-B48F-1D18A9856A87","full_name":"Cheung, Giselle T","first_name":"Giselle T","orcid":"0000-0001-8457-2572"},{"first_name":"Simon","orcid":"0000-0003-2279-1061","id":"37B36620-F248-11E8-B48F-1D18A9856A87","last_name":"Hippenmeyer","full_name":"Hippenmeyer, Simon"}],"date_created":"2026-08-23T22:01:47Z","PlanS_conform":"1","tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"month":"08","date_updated":"2026-09-09T07:11:02Z","oa_version":"Published Version","corr_author":"1","_id":"22753","type":"journal_article","publication":"Nature","project":[{"grant_number":"F7805","_id":"059F6AB4-7A3F-11EA-A408-12923DDC885E","name":"Stem Cell Modulation in Neural Development and Regeneration/ P05-Molecular Mechanisms of Neural Stem Cell Lineage Progression"},{"call_identifier":"H2020","grant_number":"725780","_id":"260018B0-B435-11E9-9278-68D0E5697425","name":"Principles of Neural Stem Cell Lineage Progression in Cerebral Cortex Development"}],"publication_identifier":{"eissn":["1476-4687"],"issn":["0028-0836"]},"article_processing_charge":"Yes (via OA deal)","das_tickbox":"1","title":"Temporal uncoupling of radial glia lineage progression in cortical organoids","publisher":"Springer Nature","ddc":["570"],"dataavailabilitystatement":"All data generated and analysed in this study are included in the paper, source data and/or Supplementary Tables 2 and 3. Raw sequencing data have been deposited with Gene Expression Omnibus (GEO) accession number GSE327470. Source data are provided with this paper. All scripts used to prepare data and figures for this manuscript are accessible on GitHub at https://github.com/fpauler/Temporal-Uncoupling-of-Radial-Glia-Lineage-Progression-in-Cortical-Organoid.","date_published":"2026-08-12T00:00:00Z","fulldoi":"https://doi.org/10.1038/s41586-026-10916-7","ec_funded":1,"has_accepted_license":"1","pmid":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file":[{"relation":"main_file","success":1,"date_created":"2026-09-07T13:24:10Z","checksum":"11383e28fc430b28d2666f73833e8b56","file_size":48513068,"date_updated":"2026-09-07T13:24:10Z","file_name":"2026_Nature_Stouffer.pdf","content_type":"application/pdf","file_id":"22844","creator":"dernst","access_level":"open_access"}],"file_date_updated":"2026-09-07T13:24:10Z","day":"12","citation":{"ista":"Stouffer MA, Miranda O, Pauler F, Pipicelli F, Streicher C, Cheung GT, Hippenmeyer S. 2026. Temporal uncoupling of radial glia lineage progression in cortical organoids. Nature.","ama":"Stouffer MA, Miranda O, Pauler F, et al. Temporal uncoupling of radial glia lineage progression in cortical organoids. <i>Nature</i>. 2026. doi:<a href=\"https://doi.org/10.1038/s41586-026-10916-7\">10.1038/s41586-026-10916-7</a>","mla":"Stouffer, Melissa A., et al. “Temporal Uncoupling of Radial Glia Lineage Progression in Cortical Organoids.” <i>Nature</i>, Springer Nature, 2026, doi:<a href=\"https://doi.org/10.1038/s41586-026-10916-7\">10.1038/s41586-026-10916-7</a>.","apa":"Stouffer, M. A., Miranda, O., Pauler, F., Pipicelli, F., Streicher, C., Cheung, G. T., &#38; Hippenmeyer, S. (2026). Temporal uncoupling of radial glia lineage progression in cortical organoids. <i>Nature</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41586-026-10916-7\">https://doi.org/10.1038/s41586-026-10916-7</a>","chicago":"Stouffer, Melissa A, Osvaldo Miranda, Florian Pauler, Fabrizia Pipicelli, Carmen Streicher, Giselle T Cheung, and Simon Hippenmeyer. “Temporal Uncoupling of Radial Glia Lineage Progression in Cortical Organoids.” <i>Nature</i>. Springer Nature, 2026. <a href=\"https://doi.org/10.1038/s41586-026-10916-7\">https://doi.org/10.1038/s41586-026-10916-7</a>.","short":"M.A. Stouffer, O. Miranda, F. Pauler, F. Pipicelli, C. Streicher, G.T. Cheung, S. Hippenmeyer, Nature (2026).","ieee":"M. A. Stouffer <i>et al.</i>, “Temporal uncoupling of radial glia lineage progression in cortical organoids,” <i>Nature</i>. Springer Nature, 2026."},"status":"public","article_type":"original","acknowledged_ssus":[{"_id":"Bio"},{"_id":"LifeSc"},{"_id":"PreCl"}],"OA_place":"publisher","publication_status":"epub_ahead","external_id":{"pmid":["42587153"]},"language":[{"iso":"eng"}],"oa":1,"supplementarymaterial":"yes","quality_controlled":"1","scopus_import":"1","abstract":[{"text":"Radial glial progenitors (RGPs) produce all excitatory neurons in the developing cerebral cortex. Mosaic analysis with double markers (MADM)-based lineage tracing in vivo has revealed a quantitative framework of RGP lineage progression1. Here we established MADM technology2,3 in mouse embryonic stem cells to probe RGP lineage progression in a self-organizing cortical organoid system. We found that RGPs exhibit a high level of plasticity in proliferative potential in organoids rather than strict temporally stereotyped lineage progression as observed in vivo. RGPs in organoids showed increased lineage restriction, diminishing cell-type diversity in clones of cortical projection neurons, despite uniform single-cell transcriptional signatures of RGPs and a unitary lineage trajectory. Thus, critical non-cell-autonomous cues that are absent in self-organizing systems and/or the genuine stem cell niche are essential for faithful temporal control of RGP lineage progression and the generation of clonal cortical cell-type diversity.","lang":"eng"}],"OA_type":"hybrid","researchdata_availability":"yes"},{"oa":1,"external_id":{"arxiv":["2511.10474"]},"language":[{"iso":"eng"}],"quality_controlled":"1","scopus_import":"1","supplementarymaterial":"yes","OA_place":"publisher","publication_status":"published","researchdata_availability":"no","abstract":[{"text":"Context. X-ray binaries exhibit complex variability patterns studied in the power spectrum. These include the broadband noise (BBN)\r\ncomponents and various types of narrow components called quasi-periodic oscillations (QPOs). There is currently no consensus about\r\nwhat determines the presence or absence of the BBN or what generates the QPOs. Many believe that QPO generation is due to framedragging effects caused by Lense–Thirring torques.\r\nAims. We investigated the potential impact of frame-dragging effects on the accretion disk itself. In particular, we focused on its\r\nimpact on the observed variability and on the presence (and types) of associated QPOs.\r\nMethods. We made analytical estimates to assess the potential presence of a geometric warp in the inner accretion disk during state\r\ntransitions.\r\nResults. We show that the presence of a warp can modify the spectral-timing properties in a way that matches the observed transition\r\nbetween QPO types during outbursts. We also discuss the peculiar case of Cyg X-1, as well as how the hard-to-soft transition could\r\nbe driven by the warp itself.\r\nConclusions. The (expected) emergence of a warp provides a consistent explanation for the evolution of both the BBN and the QPO\r\nproperties during state transitions. This offers a first path toward unifying the variability of black hole X-ray binaries.","lang":"eng"}],"OA_type":"diamond","intvolume":"       710","article_number":"A387","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","arxiv":1,"file":[{"date_created":"2026-07-21T12:20:49Z","checksum":"95c1695f3c7183b2ad9d58167500b18d","success":1,"relation":"main_file","file_id":"22382","content_type":"application/pdf","creator":"dernst","access_level":"open_access","file_size":3286905,"file_name":"2026_AstronomyAstrophysics_Marcel.pdf","date_updated":"2026-07-21T12:20:49Z"}],"has_accepted_license":"1","file_date_updated":"2026-07-21T12:20:49Z","day":"01","article_type":"original","status":"public","citation":{"mla":"Marcel, G., et al. “Disk Warping and Black Hole X-Ray Binaries: I. Tentative Unification of Low-Frequency Quasi-Periodic Oscillations.” <i>Astronomy &#38; Astrophysics</i>, vol. 710, A387, EDP Sciences, 2026, doi:<a href=\"https://doi.org/10.1051/0004-6361/202558103\">10.1051/0004-6361/202558103</a>.","ista":"Marcel G, Turner SGD, Ricketts BJ, López-Barquero V, Buisson DJK, Vincentelli F, Middleton M, Reynolds CS, Avara M. 2026. Disk warping and black hole X-ray binaries: I. Tentative unification of low-frequency quasi-periodic oscillations. Astronomy &#38; Astrophysics. 710, A387.","ama":"Marcel G, Turner SGD, Ricketts BJ, et al. Disk warping and black hole X-ray binaries: I. Tentative unification of low-frequency quasi-periodic oscillations. <i>Astronomy &#38; Astrophysics</i>. 2026;710. doi:<a href=\"https://doi.org/10.1051/0004-6361/202558103\">10.1051/0004-6361/202558103</a>","short":"G. Marcel, S.G.D. Turner, B.J. Ricketts, V. López-Barquero, D.J.K. Buisson, F. Vincentelli, M. Middleton, C.S. Reynolds, M. Avara, Astronomy &#38; Astrophysics 710 (2026).","ieee":"G. Marcel <i>et al.</i>, “Disk warping and black hole X-ray binaries: I. Tentative unification of low-frequency quasi-periodic oscillations,” <i>Astronomy &#38; Astrophysics</i>, vol. 710. EDP Sciences, 2026.","chicago":"Marcel, G., S. G. D. Turner, B. J. Ricketts, V. López-Barquero, D. J. K. Buisson, F. Vincentelli, M. Middleton, C.S. Reynolds, and Mark Avara. “Disk Warping and Black Hole X-Ray Binaries: I. Tentative Unification of Low-Frequency Quasi-Periodic Oscillations.” <i>Astronomy &#38; Astrophysics</i>. EDP Sciences, 2026. <a href=\"https://doi.org/10.1051/0004-6361/202558103\">https://doi.org/10.1051/0004-6361/202558103</a>.","apa":"Marcel, G., Turner, S. G. D., Ricketts, B. J., López-Barquero, V., Buisson, D. J. K., Vincentelli, F., … Avara, M. (2026). Disk warping and black hole X-ray binaries: I. Tentative unification of low-frequency quasi-periodic oscillations. <i>Astronomy &#38; Astrophysics</i>. EDP Sciences. <a href=\"https://doi.org/10.1051/0004-6361/202558103\">https://doi.org/10.1051/0004-6361/202558103</a>"},"type":"journal_article","publication":"Astronomy & Astrophysics","publisher":"EDP Sciences","ddc":["520"],"fulldoi":"https://doi.org/10.1051/0004-6361/202558103","date_published":"2026-06-01T00:00:00Z","das_tickbox":"0","title":"Disk warping and black hole X-ray binaries: I. Tentative unification of low-frequency quasi-periodic oscillations","article_processing_charge":"No","publication_identifier":{"issn":["0004-6361"],"eissn":["1432-0746"]},"author":[{"first_name":"G.","last_name":"Marcel","full_name":"Marcel, G."},{"first_name":"S. G. D.","last_name":"Turner","full_name":"Turner, S. G. D."},{"last_name":"Ricketts","full_name":"Ricketts, B. J.","first_name":"B. J."},{"first_name":"V.","full_name":"López-Barquero, V.","last_name":"López-Barquero"},{"last_name":"Buisson","full_name":"Buisson, D. J. K.","first_name":"D. J. K."},{"full_name":"Vincentelli, F.","last_name":"Vincentelli","first_name":"F."},{"first_name":"M.","last_name":"Middleton","full_name":"Middleton, M."},{"first_name":"C.S.","full_name":"Reynolds, C.S.","last_name":"Reynolds"},{"first_name":"Mark","full_name":"Avara, Mark","id":"24edc561-7790-11f0-acf5-82cd0823fe7e","last_name":"Avara"}],"date_created":"2026-07-21T10:29:36Z","department":[{"_id":"ZoHa"}],"doi":"10.1051/0004-6361/202558103","year":"2026","acknowledgement":"GM acknowledges support from the Polish National Science Center grant 2023/48/Q/ST9/00138 and the Academy of Finland grant 355672. The authors thank the Editor for their insightful comments and effective stewardship of the review process. SGDT acknowledges support under\r\nSTFC Grant ST/X001113/1. This work made use of the python packages\r\nMatplotlib (Hunter 2007), NumPy (Harris et al. 2020), and Stingray v2.2\r\n(Huppenkothen et al. 2019; Bachetti et al. 2024b,a).","_id":"22381","volume":710,"tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"PlanS_conform":"1","date_updated":"2026-09-09T08:38:49Z","oa_version":"Published Version","month":"06"},{"doi":"10.1038/s41467-026-75654-w","department":[{"_id":"DaAl"},{"_id":"GradSch"}],"acknowledgement":"P.T. thanks valued discussions with Dr. Peichen Zhong, Dr. Hao Tang, and Dr. Chengbin Zhao. P.T. thanks Dr. Dingshun Lv, Dr. Zechang Sun, and Dr. Chenxi Hu for identifying an important bug in an early version of the code package. The authors acknowledge the resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy Office of Science User Facility using NERSC award DOEERCAP0031751 ‘GenAI@NERSC’. P.T. acknowledges funding from the BIDMaP Postdoctoral Fellowship.","year":"2026","author":[{"full_name":"Tuo, Ping","last_name":"Tuo","id":"6e5644c0-c180-11ed-a2da-facc4c9f4f09","first_name":"Ping"},{"last_name":"Chen","id":"4d0a9064-1ff6-11ee-9fa6-ec046c604785","full_name":"Chen, Jiale","first_name":"Jiale","orcid":"0000-0001-5337-5875"},{"first_name":"Ju","full_name":"Li, Ju","last_name":"Li"}],"date_created":"2026-08-30T22:01:43Z","date_updated":"2026-09-09T07:28:15Z","tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"oa_version":"Published Version","month":"08","PlanS_conform":"1","_id":"22771","volume":17,"type":"journal_article","DOAJ_listed":"1","publication":"Nature Communications","publication_identifier":{"eissn":["2041-1723"]},"das_tickbox":"1","title":"Flow matching for reaction pathway generation","article_processing_charge":"Yes","ddc":["000"],"publisher":"Springer Nature","dataavailabilitystatement":"Structures generated in this study are provided in the Source Data file, and deposited in the GitHub repository https://github.com/tuoping/MolGEN and the figshare database under accession code https://doi.org/10.6084/m9.figshare.30576365. Source data are provided in this paper. The MolGEN codebase is available as an open-source repository for continuous development at https://github.com/tuoping/MolGEN. A release of the code used in this work has been archived on Zenodo47.","date_published":"2026-08-21T00:00:00Z","fulldoi":"https://doi.org/10.1038/s41467-026-75654-w","has_accepted_license":"1","pmid":1,"article_number":"8769","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file":[{"relation":"main_file","success":1,"checksum":"3cfb714304eec29b97dcaf7fb86dd6e3","date_created":"2026-09-09T07:25:19Z","date_updated":"2026-09-09T07:25:19Z","file_name":"2026_NatureComm_Tuo.pdf","file_size":1526298,"access_level":"open_access","creator":"dernst","content_type":"application/pdf","file_id":"22864"}],"arxiv":1,"file_date_updated":"2026-09-09T07:25:19Z","day":"21","status":"public","citation":{"ista":"Tuo P, Chen J, Li J. 2026. Flow matching for reaction pathway generation. Nature Communications. 17, 8769.","ama":"Tuo P, Chen J, Li J. Flow matching for reaction pathway generation. <i>Nature Communications</i>. 2026;17. doi:<a href=\"https://doi.org/10.1038/s41467-026-75654-w\">10.1038/s41467-026-75654-w</a>","mla":"Tuo, Ping, et al. “Flow Matching for Reaction Pathway Generation.” <i>Nature Communications</i>, vol. 17, 8769, Springer Nature, 2026, doi:<a href=\"https://doi.org/10.1038/s41467-026-75654-w\">10.1038/s41467-026-75654-w</a>.","apa":"Tuo, P., Chen, J., &#38; Li, J. (2026). Flow matching for reaction pathway generation. <i>Nature Communications</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41467-026-75654-w\">https://doi.org/10.1038/s41467-026-75654-w</a>","chicago":"Tuo, Ping, Jiale Chen, and Ju Li. “Flow Matching for Reaction Pathway Generation.” <i>Nature Communications</i>. Springer Nature, 2026. <a href=\"https://doi.org/10.1038/s41467-026-75654-w\">https://doi.org/10.1038/s41467-026-75654-w</a>.","short":"P. Tuo, J. Chen, J. Li, Nature Communications 17 (2026).","ieee":"P. Tuo, J. Chen, and J. Li, “Flow matching for reaction pathway generation,” <i>Nature Communications</i>, vol. 17. Springer Nature, 2026."},"article_type":"original","OA_place":"publisher","publication_status":"published","language":[{"iso":"eng"}],"external_id":{"pmid":["42469237"],"arxiv":["2507.10530"]},"oa":1,"supplementarymaterial":"yes","scopus_import":"1","quality_controlled":"1","abstract":[{"lang":"eng","text":"Elucidating reaction mechanisms requires efficient generation of transition states (TSs) and products. Existing diffusion and sequence-based models accelerate parts of this process over traditional string-based methods, but typically still require manual enumeration of either TSs or products, and stochastic diffusion dynamics can be inefficient and hard to control. We introduce MolGEN, a conditional flow-matching framework that uses deterministic optimal transport to map Gaussian priors to chemical distributions. For TS generation, MolGEN improves TS geometry and barrier-height prediction over diffusion models while enabling sub-second sampling. For reaction product generation, it achieves competitive top-k accuracy while preserving mass and electron balance. Using the same backbone for TS and product sampling, MolGEN enables template-free generative exploration of reaction networks without the repeated quantum-chemistry searches required by prior methods. For the γ-ketohydroperoxide decomposition network, it produces more valid TSs than string-based methods using only 12 quantum-chemistry evaluations instead of 1156, and identifies a lower-barrier pathway."}],"intvolume":"        17","OA_type":"gold","researchdata_availability":"yes"},{"keyword":["functional nanostructures","bistability","target behavior","transition pathway"],"oa":1,"OA_place":"repository","abstract":[{"lang":"eng","text":"This Research Data contains supplemental videos for Chapter 4 \"Designing bistable nanostructures for target behavior\" of my PhD Thesis \"Biological functionality without biochemistry: designing nanomachines for target behavior\".\r\nSupplemental video 1: Video showing the transition pathway of a bistable nanostructure with sphere-based arms, corresponding to the Machine in Scenario 4.\r\nSupplemental video 2: Video showing the transition pathway of the Source in Scenario 1. The arm tips change sides during the transition, demonstrating that the arms pass through each other.\r\nSupplemental video 3: Video showing the transition pathway of a fully polyhedral hinge structure with unconstrained arms. Note that we only show the ends of the arms.\r\nSupplemental video 4: Video showing the transition pathway of the coupled energy-delivery reaction of a Machine (gray) and a Source (blue) nanostructure for the optimized parameters in Scenario 3. Note that we only show the ends of the arms."}],"user_id":"68b8ca59-c5b3-11ee-8790-cd641c68093d","file":[{"date_created":"2026-09-08T11:31:32Z","checksum":"966417b3eab49523068bb0dfba4ecc07","success":1,"relation":"main_file","file_id":"22853","content_type":"video/mp4","creator":"aehrmann","access_level":"open_access","file_size":1513964,"date_updated":"2026-09-08T11:31:32Z","file_name":"Supplemental video 1.mp4"},{"success":1,"relation":"main_file","checksum":"deddcae30875bff8e59d5dc9ee3c196f","date_created":"2026-09-08T11:31:37Z","date_updated":"2026-09-08T11:31:37Z","file_name":"Supplemental video 2.mp4","file_size":2634179,"creator":"aehrmann","access_level":"open_access","file_id":"22854","content_type":"video/mp4"},{"relation":"main_file","success":1,"checksum":"721446b7595edc670d877185637cf15c","date_created":"2026-09-08T11:31:42Z","file_name":"Supplemental video 3.mp4","date_updated":"2026-09-08T11:31:42Z","file_size":2080684,"creator":"aehrmann","access_level":"open_access","file_id":"22855","content_type":"video/mp4"},{"date_created":"2026-09-08T11:31:48Z","checksum":"da44153821aa4f8f3cbc2860ef6d1bad","success":1,"relation":"main_file","content_type":"video/mp4","file_id":"22856","access_level":"open_access","creator":"aehrmann","file_size":4047831,"file_name":"Supplemental video 4.mp4","date_updated":"2026-09-08T11:31:48Z"},{"file_size":1122,"date_updated":"2026-09-08T18:36:14Z","file_name":"README.txt","file_id":"22860","content_type":"text/plain","access_level":"open_access","creator":"aehrmann","success":1,"relation":"main_file","date_created":"2026-09-08T18:36:14Z","checksum":"1e94cd067809e1a93e21676181b4c102"}],"has_accepted_license":"1","acknowledged_ssus":[{"_id":"ScienComp"}],"file_date_updated":"2026-09-08T18:36:14Z","day":"09","citation":{"mla":"Ehrmann, Andreas. <i>Supplemental Videos for Designing Bistable Nanostructures for Target Behavior</i>. Institute of Science and Technology Austria, 2026, doi:<a href=\"https://doi.org/10.15479/AT-ISTA-22852\">10.15479/AT-ISTA-22852</a>.","ama":"Ehrmann A. Supplemental videos for Designing bistable nanostructures for target behavior. 2026. doi:<a href=\"https://doi.org/10.15479/AT-ISTA-22852\">10.15479/AT-ISTA-22852</a>","ista":"Ehrmann A. 2026. Supplemental videos for Designing bistable nanostructures for target behavior, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT-ISTA-22852\">10.15479/AT-ISTA-22852</a>.","ieee":"A. Ehrmann, “Supplemental videos for Designing bistable nanostructures for target behavior.” Institute of Science and Technology Austria, 2026.","short":"A. Ehrmann, (2026).","apa":"Ehrmann, A. (2026). Supplemental videos for Designing bistable nanostructures for target behavior. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT-ISTA-22852\">https://doi.org/10.15479/AT-ISTA-22852</a>","chicago":"Ehrmann, Andreas. “Supplemental Videos for Designing Bistable Nanostructures for Target Behavior.” Institute of Science and Technology Austria, 2026. <a href=\"https://doi.org/10.15479/AT-ISTA-22852\">https://doi.org/10.15479/AT-ISTA-22852</a>."},"status":"public","project":[{"name":"Functional bio-inspired nanomachines from sticky colloids","_id":"90a98bb5-16d5-11f0-9cad-9675f3f8015d","grant_number":"PAT 8537123"}],"contributor":[{"last_name":"Ehrmann","id":"eaa689ed-f6e0-11ea-865d-bd98cbcf83c2","contributor_type":"data_collector","first_name":"Andreas","orcid":"0000-0002-0997-5678"}],"type":"research_data","publisher":"Institute of Science and Technology Austria","date_published":"2026-09-09T00:00:00Z","fulldoi":"https://doi.org/10.15479/AT-ISTA-22852","title":"Supplemental videos for Designing bistable nanostructures for target behavior","article_processing_charge":"No","author":[{"id":"eaa689ed-f6e0-11ea-865d-bd98cbcf83c2","last_name":"Ehrmann","full_name":"Ehrmann, Andreas","first_name":"Andreas","orcid":"0000-0002-0997-5678"}],"date_created":"2026-09-08T11:32:53Z","doi_confirm":"1","doi":"10.15479/AT-ISTA-22852","department":[{"_id":"GradSch"},{"_id":"CaGo"},{"_id":"EdHa"}],"year":"2026","_id":"22852","date_updated":"2026-09-09T07:24:10Z","tmp":{"short":"CC BY-NC-SA (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode","image":"/images/cc_by_nc_sa.png","name":"Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)"},"oa_version":"None","month":"09","corr_author":"1"},{"publication_status":"published","supplementarymaterial":"not applicable","quality_controlled":"1","scopus_import":"1","external_id":{"pmid":["42649374"]},"language":[{"iso":"eng"}],"intvolume":"        25","OA_type":"closed access","abstract":[{"lang":"eng","text":"Using transition metals efficiently in aqueous batteries requires transferring multiple electrons per metal, which leads to difficult-to-manage conversion reactions. It is now shown how vanadium can be changed from one-electron insertion to four-electron conversion."}],"researchdata_availability":"not applicable","pmid":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"chicago":"Freunberger, Stefan Alexander. “Triggering Conversion in Vanadium Electrodes.” <i>Nature Materials</i>. Springer Nature, 2026. <a href=\"https://doi.org/10.1038/s41563-026-02714-3\">https://doi.org/10.1038/s41563-026-02714-3</a>.","apa":"Freunberger, S. A. (2026). Triggering conversion in vanadium electrodes. <i>Nature Materials</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41563-026-02714-3\">https://doi.org/10.1038/s41563-026-02714-3</a>","short":"S.A. Freunberger, Nature Materials 25 (2026) 1482–1483.","ieee":"S. A. Freunberger, “Triggering conversion in vanadium electrodes,” <i>Nature Materials</i>, vol. 25, no. 9. Springer Nature, pp. 1482–1483, 2026.","ista":"Freunberger SA. 2026. Triggering conversion in vanadium electrodes. Nature Materials. 25(9), 1482–1483.","ama":"Freunberger SA. Triggering conversion in vanadium electrodes. <i>Nature Materials</i>. 2026;25(9):1482-1483. doi:<a href=\"https://doi.org/10.1038/s41563-026-02714-3\">10.1038/s41563-026-02714-3</a>","mla":"Freunberger, Stefan Alexander. “Triggering Conversion in Vanadium Electrodes.” <i>Nature Materials</i>, vol. 25, no. 9, Springer Nature, 2026, pp. 1482–83, doi:<a href=\"https://doi.org/10.1038/s41563-026-02714-3\">10.1038/s41563-026-02714-3</a>."},"status":"public","article_type":"comment","day":"01","publication":"Nature Materials","type":"journal_article","issue":"9","publication_identifier":{"eissn":["1476-4660"],"issn":["1476-1122"]},"title":"Triggering conversion in vanadium electrodes","article_processing_charge":"No","das_tickbox":"0","date_published":"2026-09-01T00:00:00Z","fulldoi":"https://doi.org/10.1038/s41563-026-02714-3","publisher":"Springer Nature","year":"2026","doi":"10.1038/s41563-026-02714-3","department":[{"_id":"StFr"}],"date_created":"2026-08-26T18:48:33Z","author":[{"first_name":"Stefan Alexander","orcid":"0000-0003-2902-5319","id":"A8CA28E6-CE23-11E9-AD2D-EC27E6697425","last_name":"Freunberger","full_name":"Freunberger, Stefan Alexander"}],"corr_author":"1","oa_version":"None","date_updated":"2026-09-09T07:17:13Z","month":"09","volume":25,"page":"1482-1483","_id":"22769"},{"author":[{"orcid":"0009-0003-6339-4051","first_name":"Michael","full_name":"Wassermair, Michael","id":"23d132c4-4e98-11ef-b275-9e8d4cd8c917","last_name":"Wassermair"},{"last_name":"Kahl","full_name":"Kahl, Gerhard","first_name":"Gerhard"},{"first_name":"Andrew J.","last_name":"Archer","full_name":"Archer, Andrew J."},{"first_name":"Roland","last_name":"Roth","full_name":"Roth, Roland"}],"date_created":"2026-08-30T22:01:44Z","doi":"10.1021/acs.jpcb.6c00653","department":[{"_id":"AnSa"}],"acknowledgement":"We are grateful to Florian Sanmüller and Matthias Schmidt for valuable comments on the manuscript and helpful discussions. The simulation results presented here were enabled via a generous allocation of CPU time by the Austrian Scientific Computing (ASC) under Project No. 71263. The authors thank Katrin Muck for her guidance related to the use of HPC. A.J.A. gratefully acknowledges support from the EPSRC under Grant No. EP/P015689/1. This research was funded in part by the Austrian Science Fund (FWF) under project no. PIN8759524 with Grant-DOI 10.55776/PIN8759524, gratefully acknowledged by GK.","year":"2026","_id":"22773","volume":130,"page":"8514-8526","date_updated":"2026-09-09T11:11:12Z","tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"oa_version":"Published Version","month":"08","PlanS_conform":"1","corr_author":"1","type":"journal_article","issue":"33","publication":"Journal of Physical Chemistry B","ddc":["530","540"],"publisher":"American Chemical Society","date_published":"2026-08-20T00:00:00Z","fulldoi":"https://doi.org/10.1021/acs.jpcb.6c00653","publication_identifier":{"eissn":["1520-5207"],"issn":["1520-6106"]},"article_processing_charge":"Yes (in subscription journal)","das_tickbox":"0","title":"Radial distribution function in a two-dimensional core-shoulder particle system","pmid":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file":[{"file_id":"22871","content_type":"application/pdf","access_level":"open_access","creator":"dernst","file_size":7472078,"file_name":"2026_JourPhysicChemistryB_Wassermair.pdf","date_updated":"2026-09-09T11:05:02Z","date_created":"2026-09-09T11:05:02Z","checksum":"67313d68ab13b553a38e8b4bf99983d2","success":1,"relation":"main_file"}],"arxiv":1,"has_accepted_license":"1","file_date_updated":"2026-09-09T11:05:02Z","day":"20","citation":{"ama":"Wassermair M, Kahl G, Archer AJ, Roth R. Radial distribution function in a two-dimensional core-shoulder particle system. <i>Journal of Physical Chemistry B</i>. 2026;130(33):8514-8526. doi:<a href=\"https://doi.org/10.1021/acs.jpcb.6c00653\">10.1021/acs.jpcb.6c00653</a>","ista":"Wassermair M, Kahl G, Archer AJ, Roth R. 2026. Radial distribution function in a two-dimensional core-shoulder particle system. Journal of Physical Chemistry B. 130(33), 8514–8526.","mla":"Wassermair, Michael, et al. “Radial Distribution Function in a Two-Dimensional Core-Shoulder Particle System.” <i>Journal of Physical Chemistry B</i>, vol. 130, no. 33, American Chemical Society, 2026, pp. 8514–26, doi:<a href=\"https://doi.org/10.1021/acs.jpcb.6c00653\">10.1021/acs.jpcb.6c00653</a>.","apa":"Wassermair, M., Kahl, G., Archer, A. J., &#38; Roth, R. (2026). Radial distribution function in a two-dimensional core-shoulder particle system. <i>Journal of Physical Chemistry B</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/acs.jpcb.6c00653\">https://doi.org/10.1021/acs.jpcb.6c00653</a>","chicago":"Wassermair, Michael, Gerhard Kahl, Andrew J. Archer, and Roland Roth. “Radial Distribution Function in a Two-Dimensional Core-Shoulder Particle System.” <i>Journal of Physical Chemistry B</i>. American Chemical Society, 2026. <a href=\"https://doi.org/10.1021/acs.jpcb.6c00653\">https://doi.org/10.1021/acs.jpcb.6c00653</a>.","ieee":"M. Wassermair, G. Kahl, A. J. Archer, and R. Roth, “Radial distribution function in a two-dimensional core-shoulder particle system,” <i>Journal of Physical Chemistry B</i>, vol. 130, no. 33. American Chemical Society, pp. 8514–8526, 2026.","short":"M. Wassermair, G. Kahl, A.J. Archer, R. Roth, Journal of Physical Chemistry B 130 (2026) 8514–8526."},"status":"public","article_type":"original","external_id":{"pmid":["42622279"],"arxiv":["2603.24537"]},"language":[{"iso":"eng"}],"oa":1,"supplementarymaterial":"yes","scopus_import":"1","quality_controlled":"1","OA_place":"publisher","publication_status":"published","researchdata_availability":"no","abstract":[{"lang":"eng","text":"An important quantity in liquid state theory is the radial distribution function g(r). It can be calculated within the framework of classical density functional theory in two very distinct ways. In the test-particle route, one fixes a single fluid particle, turning it into an external potential in which the inhomogeneous structure of the fluid is calculated by minimizing the functional. The second route to g(r) in density functional theory employs the Ornstein–Zernike equation and the pair direct correlation function, that can be obtained from the second functional derivatives of the excess (over the ideal gas) free energy functional. Since typically an approximate excess free energy functional is employed, the test-particle route, which requires only one functional derivative, is more accurate than the Ornstein–Zernike route. Here we study a two-dimensional core-shoulder particle system and find that in some circumstances the results from the Ornstein–Zernike route can be comparable in accuracy to the test-particle results for r > σ, the core diameter. We also examine in detail the asymptotic r → ∞ decay of g(r), finding a variety of possible decay wavelengths at different state points and state points where there is a crossover from one wavelength to a very different one. This behavior is a signature pointing to the rich phase behavior of the incipient solid phases."}],"intvolume":"       130","OA_type":"hybrid"},{"researchdata_availability":"no","abstract":[{"text":"The mass assembly and chemical enrichment of the first galaxies provide key insights into their star formation histories and the earliest stellar populations at cosmic dawn. Here we compile and utilise new, high-quality spectroscopic JWST/NIRSpec Prism observations from the JWST archive. In particular, we extend the wavelength coverage beyond the standard pipeline cut-off (5.3 μm) up to 5.5 μm, which enables for the first time a detailed examination of the rest-frame optical emission-line properties for galaxies at z ≈ 10. Crucially, the improved calibration allows us to detect Hβ and the [O III] λλ4959, 5007 doublet and resolve the auroral [O III] λ4363 line for the 11 galaxies in our sample (z = 9.3 − 10.0) to obtain direct Te-based metallicity measurements. We find that the interstellar medium (ISM) of all galaxies shows high ionisation fields and electron temperatures, with derived metallicities in the range 12 + log(O/H) = 7.1 − 8.3 (3–50% solar), consistent with previous strong-line diagnostics based on JWST data at high redshifts. We derive an empirical relation for MUV and 12 + log(O/H) at z ≈ 10, useful for future higher-redshift studies, and show that the sample galaxies are ‘typical’ star-forming galaxies though with relatively high specific star formation rates (median sSFR = SFRHβ/M★ = 38 Gyr−1) and with evidence of bursty star formation on 10 Myr versus 100 Myr timescales (log10(SFR10/SFR100)≈0.7). Combining the rest-frame optical line analysis and detailed UV to optical spectro-photometric modelling, we determine the mass-metallicity relation (MZR) and the fundamental metallicity relation (FMR) of the sample, pushing the previous redshift frontier of these measurements to z = 10. These results, together with literature measurements, point to a gradually decreasing MZR at higher redshifts, with a break in the FMR at z ≈ 3, decreasing to metallicities ≈3× lower at z = 10 than observed in galaxies during the majority of cosmic time at z = 0 − 3, likely caused by massive pristine gas inflows diluting the observed metal abundances during early galaxy assembly at cosmic dawn.","lang":"eng"}],"intvolume":"       708","OA_type":"gold","external_id":{"arxiv":["2506.15779"]},"language":[{"iso":"eng"}],"oa":1,"supplementarymaterial":"no","quality_controlled":"1","scopus_import":"1","OA_place":"publisher","publication_status":"published","file_date_updated":"2026-09-09T12:03:50Z","day":"01","citation":{"mla":"Pollock, Clara L., et al. “Novel z ∼ 10 Auroral Line Measurements Extend the Gradual Offset of the Fundamental Metallicity Relation Deep into the First Gigayear of Cosmic Time.” <i>Astronomy &#38; Astrophysics</i>, vol. 708, A203, EDP Sciences, 2026, doi:<a href=\"https://doi.org/10.1051/0004-6361/202556032\">10.1051/0004-6361/202556032</a>.","ista":"Pollock CL, Gottumukkala R, Heintz KE, Brammer GB, Roberts-Borsani G, Oesch PA, Witstok J, Arellano-Córdova KZ, Cullen F, Scholte D, Terp C, Rowland L, Sneppen A, Ito K, Valentino F, Matthee JJ, Watson D, Toft S. 2026. Novel z ∼ 10 auroral line measurements extend the gradual offset of the fundamental metallicity relation deep into the first gigayear of cosmic time. Astronomy &#38; Astrophysics. 708, A203.","ama":"Pollock CL, Gottumukkala R, Heintz KE, et al. Novel z ∼ 10 auroral line measurements extend the gradual offset of the fundamental metallicity relation deep into the first gigayear of cosmic time. <i>Astronomy &#38; Astrophysics</i>. 2026;708. doi:<a href=\"https://doi.org/10.1051/0004-6361/202556032\">10.1051/0004-6361/202556032</a>","short":"C.L. Pollock, R. Gottumukkala, K.E. Heintz, G.B. Brammer, G. Roberts-Borsani, P.A. Oesch, J. Witstok, K.Z. Arellano-Córdova, F. Cullen, D. Scholte, C. Terp, L. Rowland, A. Sneppen, K. Ito, F. Valentino, J.J. Matthee, D. Watson, S. Toft, Astronomy &#38; Astrophysics 708 (2026).","ieee":"C. L. Pollock <i>et al.</i>, “Novel z ∼ 10 auroral line measurements extend the gradual offset of the fundamental metallicity relation deep into the first gigayear of cosmic time,” <i>Astronomy &#38; Astrophysics</i>, vol. 708. EDP Sciences, 2026.","apa":"Pollock, C. L., Gottumukkala, R., Heintz, K. E., Brammer, G. B., Roberts-Borsani, G., Oesch, P. A., … Toft, S. (2026). Novel z ∼ 10 auroral line measurements extend the gradual offset of the fundamental metallicity relation deep into the first gigayear of cosmic time. <i>Astronomy &#38; Astrophysics</i>. EDP Sciences. <a href=\"https://doi.org/10.1051/0004-6361/202556032\">https://doi.org/10.1051/0004-6361/202556032</a>","chicago":"Pollock, Clara L., Rashmi Gottumukkala, Kasper E. Heintz, Gabriel B. Brammer, Guido Roberts-Borsani, Pascal A. Oesch, Joris Witstok, et al. “Novel z ∼ 10 Auroral Line Measurements Extend the Gradual Offset of the Fundamental Metallicity Relation Deep into the First Gigayear of Cosmic Time.” <i>Astronomy &#38; Astrophysics</i>. EDP Sciences, 2026. <a href=\"https://doi.org/10.1051/0004-6361/202556032\">https://doi.org/10.1051/0004-6361/202556032</a>."},"status":"public","article_type":"original","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_number":"A203","arxiv":1,"file":[{"relation":"main_file","success":1,"checksum":"4ab5af6fac257723afe2b7cf9fcbfa4c","date_created":"2026-09-09T12:03:50Z","date_updated":"2026-09-09T12:03:50Z","file_name":"2026_AstronomyAstrophysics_Pollock.pdf","file_size":1854789,"creator":"dernst","access_level":"open_access","content_type":"application/pdf","file_id":"22874"}],"has_accepted_license":"1","publisher":"EDP Sciences","ddc":["520"],"date_published":"2026-04-01T00:00:00Z","fulldoi":"https://doi.org/10.1051/0004-6361/202556032","publication_identifier":{"eissn":["1432-0746"],"issn":["0004-6361"]},"article_processing_charge":"Yes","title":"Novel z ∼ 10 auroral line measurements extend the gradual offset of the fundamental metallicity relation deep into the first gigayear of cosmic time","das_tickbox":"0","type":"journal_article","publication":"Astronomy & Astrophysics","DOAJ_listed":"1","_id":"22815","volume":708,"oa_version":"Published Version","tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"month":"04","date_updated":"2026-09-09T12:07:45Z","PlanS_conform":"1","author":[{"first_name":"Clara L.","full_name":"Pollock, Clara L.","last_name":"Pollock"},{"first_name":"Rashmi","last_name":"Gottumukkala","full_name":"Gottumukkala, Rashmi"},{"first_name":"Kasper E.","full_name":"Heintz, Kasper E.","last_name":"Heintz"},{"first_name":"Gabriel B.","last_name":"Brammer","full_name":"Brammer, Gabriel B."},{"last_name":"Roberts-Borsani","full_name":"Roberts-Borsani, Guido","first_name":"Guido"},{"first_name":"Pascal A.","last_name":"Oesch","full_name":"Oesch, Pascal A."},{"first_name":"Joris","last_name":"Witstok","full_name":"Witstok, Joris"},{"first_name":"Karla Z.","last_name":"Arellano-Córdova","full_name":"Arellano-Córdova, Karla Z."},{"last_name":"Cullen","full_name":"Cullen, Fergus","first_name":"Fergus"},{"last_name":"Scholte","full_name":"Scholte, Dirk","first_name":"Dirk"},{"first_name":"Chamilla","last_name":"Terp","full_name":"Terp, Chamilla"},{"full_name":"Rowland, Lucie","last_name":"Rowland","first_name":"Lucie"},{"full_name":"Sneppen, Albert","last_name":"Sneppen","first_name":"Albert"},{"full_name":"Ito, Kei","last_name":"Ito","first_name":"Kei"},{"first_name":"Francesco","full_name":"Valentino, Francesco","last_name":"Valentino"},{"orcid":"0000-0003-2871-127X","first_name":"Jorryt J","full_name":"Matthee, Jorryt J","last_name":"Matthee","id":"7439a258-f3c0-11ec-9501-9df22fe06720"},{"first_name":"Darach","last_name":"Watson","full_name":"Watson, Darach"},{"last_name":"Toft","full_name":"Toft, Sune","first_name":"Sune"}],"date_created":"2026-09-06T22:01:56Z","doi":"10.1051/0004-6361/202556032","department":[{"_id":"JoMa"}],"acknowledgement":"We would like to thank the referee for providing a comprehensive and constructive report, greatly improving the results presented in this work. We further express our greatest gratitude to the investigators on the major JWST observing programs, such as RUBIES, CAPERS, UNCOVER, and JADES. The work presented here would not have been possible without their major efforts in designing and obtaining the observational data included in our work here. The Cosmic Dawn Center (DAWN) is funded by the Danish National Research Foundation under grant DNRF140. The data products presented herein were retrieved from the DAWN JWST Archive (DJA). DJA is an initiative of the Cosmic Dawn Center, which is funded by the Danish National Research Foundation under grant DNRF140. This work has received funding from the Swiss State Secretariat for Education, Research and Innovation (SERI) under contract number MB22.00072, as well as from the Swiss National Science Foundation (SNSF) through project grant 200020_207349. This work is based in part on observations made with the NASA/ESA/CSA James Webb Space Telescope. The data were obtained from the Mikulski Archive for Space Telescopes (MAST) at the Space Telescope Science Institute, which is operated by the Association of Universities for Research in Astronomy, Inc., under NASA contract NAS 5-03127 for JWST. Software used in this work includes MATPLOTLIB (Hunter 2007), NUMPY (Harris et al. 2020), SCIPY (Virtanen et al. 2020), and ASTROPY (Astropy Collaboration 2013).","year":"2026"},{"tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"month":"09","date_updated":"2026-09-09T11:31:04Z","PlanS_conform":"1","oa_version":"Published Version","volume":54,"_id":"22772","year":"2026","acknowledgement":"This work was supported by Austrian Science Fund project F80-07 to M.F.J., F80-03 to C.B., and ZK57-B28 to C.V.; National Health and Medical Research Council Australia (NHMRC; GNT2018098 to C.R.W.). The work was supported in part by the Victorian State Government Operational Infrastructure Support Scheme to St Vincent’s Institute and Hudson Institute of Medical Research. R.V. and A.L. were supported by Doc Fund/DOC32 of the Austrian Science Fund. Funding to pay the Open Access publication charges for this article was provided by Austrian Science Fund. For open access purposes, the author has applied a CC BY public copyright license to any author accepted manuscript version arising from this submission.","department":[{"_id":"CaBe"},{"_id":"GradSch"}],"doi":"10.1093/nar/gkag845","date_created":"2026-08-30T22:01:44Z","author":[{"full_name":"Varada, Rajagopal","last_name":"Varada","first_name":"Rajagopal"},{"last_name":"Leuchtenberger","full_name":"Leuchtenberger, Alina F.","first_name":"Alina F."},{"first_name":"Cornelia","full_name":"Vesely, Cornelia","last_name":"Vesely"},{"id":"36FA4AFA-F248-11E8-B48F-1D18A9856A87","last_name":"Kaczmarek","full_name":"Kaczmarek, Beata M","first_name":"Beata M"},{"last_name":"Mansouri Khosravi","full_name":"Mansouri Khosravi, Hamid","first_name":"Hamid"},{"first_name":"Therese C.","full_name":"Mandl, Therese C.","last_name":"Mandl"},{"first_name":"Katarina","full_name":"Milanovic, Katarina","last_name":"Milanovic"},{"last_name":"Honarmand Tamizkar","full_name":"Honarmand Tamizkar, Kasra","first_name":"Kasra"},{"first_name":"Vinod","full_name":"Rajendra, Vinod","last_name":"Rajendra"},{"first_name":"Hannes","full_name":"Senoner, Hannes","last_name":"Senoner"},{"first_name":"Linda","last_name":"Steinbichl","full_name":"Steinbichl, Linda"},{"last_name":"Borojevic","full_name":"Borojevic, Marija","first_name":"Marija"},{"first_name":"Andy","last_name":"Sombke","full_name":"Sombke, Andy"},{"first_name":"Katy","full_name":"Schmidt, Katy","last_name":"Schmidt"},{"first_name":"Margret","last_name":"Eckhard","full_name":"Eckhard, Margret"},{"first_name":"Ivo L.","last_name":"Hofacker","full_name":"Hofacker, Ivo L."},{"last_name":"Walkley","full_name":"Walkley, Carl","first_name":"Carl"},{"last_name":"Heraud-Farlow","full_name":"Heraud-Farlow, Jacki E.","first_name":"Jacki E."},{"first_name":"Ernesto","last_name":"Picardi","full_name":"Picardi, Ernesto"},{"full_name":"Bernecky, Carrie A","id":"2CB9DFE2-F248-11E8-B48F-1D18A9856A87","last_name":"Bernecky","orcid":"0000-0003-0893-7036","first_name":"Carrie A"},{"first_name":"Michael F.","last_name":"Jantsch","full_name":"Jantsch, Michael F."}],"article_processing_charge":"Yes","title":"Distinguishing self from non-self RNA by editing-specific inosine patterns","das_tickbox":"1","publication_identifier":{"eissn":["1362-4962"]},"fulldoi":"https://doi.org/10.1093/nar/gkag845","date_published":"2026-09-09T00:00:00Z","dataavailabilitystatement":"Sequencing data has been deposited at GEO and is available under accession number GSE293616.\r\nEditing analysis of protected dsRNA is available in GitHub, https://github.com/BioinfoUNIBA/Mouse-dsRNA-mda5, and Zenodo, https://doi.org/10.5281/zenodo.17876716.","ddc":["570"],"publisher":"Oxford University Press","publication":"Nucleic Acids Research","DOAJ_listed":"1","issue":"16","type":"journal_article","project":[{"name":"RNAdeco: decorating RNA for a purpose/ P03- Roles of A-to-I editing in dsRNA recognition","grant_number":"F8003","_id":"8dc144d4-16d5-11f0-9cad-9d9e86aea1f7"}],"article_type":"original","citation":{"ieee":"R. Varada <i>et al.</i>, “Distinguishing self from non-self RNA by editing-specific inosine patterns,” <i>Nucleic Acids Research</i>, vol. 54, no. 16. Oxford University Press, 2026.","short":"R. Varada, A.F. Leuchtenberger, C. Vesely, B.M. Kaczmarek, H. Mansouri Khosravi, T.C. Mandl, K. Milanovic, K. Honarmand Tamizkar, V. Rajendra, H. Senoner, L. Steinbichl, M. Borojevic, A. Sombke, K. Schmidt, M. Eckhard, I.L. Hofacker, C. Walkley, J.E. Heraud-Farlow, E. Picardi, C. Bernecky, M.F. Jantsch, Nucleic Acids Research 54 (2026).","apa":"Varada, R., Leuchtenberger, A. F., Vesely, C., Kaczmarek, B. M., Mansouri Khosravi, H., Mandl, T. C., … Jantsch, M. F. (2026). Distinguishing self from non-self RNA by editing-specific inosine patterns. <i>Nucleic Acids Research</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/nar/gkag845\">https://doi.org/10.1093/nar/gkag845</a>","chicago":"Varada, Rajagopal, Alina F. Leuchtenberger, Cornelia Vesely, Beata M Kaczmarek, Hamid Mansouri Khosravi, Therese C. Mandl, Katarina Milanovic, et al. “Distinguishing Self from Non-Self RNA by Editing-Specific Inosine Patterns.” <i>Nucleic Acids Research</i>. Oxford University Press, 2026. <a href=\"https://doi.org/10.1093/nar/gkag845\">https://doi.org/10.1093/nar/gkag845</a>.","mla":"Varada, Rajagopal, et al. “Distinguishing Self from Non-Self RNA by Editing-Specific Inosine Patterns.” <i>Nucleic Acids Research</i>, vol. 54, no. 16, gkag845, Oxford University Press, 2026, doi:<a href=\"https://doi.org/10.1093/nar/gkag845\">10.1093/nar/gkag845</a>.","ama":"Varada R, Leuchtenberger AF, Vesely C, et al. Distinguishing self from non-self RNA by editing-specific inosine patterns. <i>Nucleic Acids Research</i>. 2026;54(16). doi:<a href=\"https://doi.org/10.1093/nar/gkag845\">10.1093/nar/gkag845</a>","ista":"Varada R, Leuchtenberger AF, Vesely C, Kaczmarek BM, Mansouri Khosravi H, Mandl TC, Milanovic K, Honarmand Tamizkar K, Rajendra V, Senoner H, Steinbichl L, Borojevic M, Sombke A, Schmidt K, Eckhard M, Hofacker IL, Walkley C, Heraud-Farlow JE, Picardi E, Bernecky C, Jantsch MF. 2026. Distinguishing self from non-self RNA by editing-specific inosine patterns. Nucleic Acids Research. 54(16), gkag845."},"status":"public","day":"09","file_date_updated":"2026-09-09T11:29:49Z","has_accepted_license":"1","file":[{"file_size":6016116,"file_name":"2026_NucleicAcidsResearch_Varada.pdf","date_updated":"2026-09-09T11:29:49Z","file_id":"22872","content_type":"application/pdf","access_level":"open_access","creator":"dernst","relation":"main_file","success":1,"date_created":"2026-09-09T11:29:49Z","checksum":"319904a237f73dcc55daa4a56baa98fa"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_number":"gkag845","pmid":1,"OA_type":"gold","intvolume":"        54","abstract":[{"text":"The cytoplasmic antiviral sensor MDA5 is activated by double-stranded RNAs. Endogenous double-stranded RNAs are modified by the A-to-I RNA-editing ADAR family to prevent activation of MDA5. In vivo, cytoplasmic ADAR1p150 is critically required to suppress MDA5 activation, yet the editing signature of all ADAR isoforms is strongly overlapping in mice. Further, it is not clear how A-to-I modifications in dsRNA prevent MDA5 activation. Here we show that 3′ UTRs harboring inverted repeats activate MDA5 in vitro and in cells. In vitro editing by either ADAR isoform leads to editing at overlapping hotspot regions and prevents MDA5 activation in vitro and in cells. Remarkably, only inosines introduced by RNA editing are capable of suppressing MDA5 activation, while replacing guanosines with inosines during in vitro transcription has no impact on MDA5 activation. A comparison of inosines introduced by ADAR1p150 in vitro, in cells, and in vivo suggests that a small number of A-to-I conversions may be critically required to suppress MDA5 activation. As those critical editing events are predominantly altering A:U basepairs into I:U wobble basepairs, we suggest that the helical distortion introduced by those wobble pairs may prevent MDA5 polymerization and thus downstream activation of the type I interferon response.","lang":"eng"}],"researchdata_availability":"yes","publication_status":"published","OA_place":"publisher","scopus_import":"1","quality_controlled":"1","supplementarymaterial":"yes","oa":1,"external_id":{"pmid":["42635125"]},"language":[{"iso":"eng"}]},{"publication":"The Astrophysical Journal","DOAJ_listed":"1","type":"journal_article","issue":"2","publication_identifier":{"issn":["0004-637X"],"eissn":["1538-4357"]},"article_processing_charge":"Yes","das_tickbox":"0","title":"Pseudo Little Red Dot: An active black hole embedded in a dense and dusty, metal-poor starburst galaxy at z = 5.96","date_published":"2026-08-20T00:00:00Z","fulldoi":"https://doi.org/10.3847/1538-4357/ae80b9","publisher":"IOP Publishing","ddc":["520"],"acknowledgement":"We are grateful to Daniela Calzetti, Andrea Ferrara, Kohei Inayoshi, Roberto Maiolino, Gabriele Pezzulli, Fengwu Sun, and Z. Yan for useful discussions; José M. Diego for providing us the most updated magnification value for our source; Raphael Hviding for making his Python package unite public and instructing us regarding its use; and Elka Rusta and Stefania Salvadori for providing us their galaxy SED models with hybrid Pop III stellar populations. We also thank the anonymous referee for a useful and constructive report.\r\n\r\nThis work is based on observations made with the NASA/ESA/CSA JWST. The data were obtained from the Mikulski Archive for Space Telescopes at the Space Telescope Science Institute, which is operated by the Association of Universities for Research in Astronomy, Inc., under NASA contract NAS 5-03127 for JWST. These observations are associated with the JWST GTO program PID 1208. The specific observations analyzed here can be accessed via doi:10.17909/pyr9-5r43. Some of the analyzed data products were retrieved from the Dawn JWST Archive (DJA). DJA is an initiative of the Cosmic Dawn Center (DAWN), which is funded by the Danish National Research Foundation under grant DNRF140. This work is also based on observations made with the NASA/ESA Hubble Space Telescope obtained from the Space Telescope Science Institute, which is operated by the Association of Universities for Research in Astronomy, Inc., under NASA contract NAS 526555.\r\n\r\nK.I.C. and R.N.C. acknowledge funding from the Dutch Research Council (NWO) through the award of the Vici grant VI.C.212.036.","year":"2026","doi":"10.3847/1538-4357/ae80b9","department":[{"_id":"JoMa"}],"date_created":"2026-09-06T22:01:56Z","author":[{"first_name":"Karina I.","last_name":"Caputi","full_name":"Caputi, Karina I."},{"first_name":"Ryan A.","full_name":"Cooper, Ryan A.","last_name":"Cooper"},{"first_name":"Pierluigi","full_name":"Rinaldi, Pierluigi","last_name":"Rinaldi"},{"full_name":"Navarro-Carrera, Rafael","last_name":"Navarro-Carrera","first_name":"Rafael"},{"first_name":"Edoardo","orcid":"0000-0001-8386-3546","id":"4053390a-6b68-11ef-9828-a3b8adef8d0a","last_name":"Iani","full_name":"Iani, Edoardo"},{"first_name":"Abigail A.","last_name":"Tumborang","full_name":"Tumborang, Abigail A."}],"date_updated":"2026-09-09T12:19:54Z","tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"month":"08","oa_version":"Published Version","volume":1007,"_id":"22814","publication_status":"published","OA_place":"publisher","supplementarymaterial":"no","scopus_import":"1","quality_controlled":"1","external_id":{"arxiv":["2601.11466"]},"language":[{"iso":"eng"}],"oa":1,"intvolume":"      1007","OA_type":"gold","abstract":[{"lang":"eng","text":"We present a study of a pseudo little red dot with no metal lines (Pseudo-LRD-NOM), a highly magnified lowmass galaxy behind the lensing cluster A370 at z = 5.96. We classify this object as a pseudo-LRD because its red\r\nrest-frame optical color is contaminated by a prominent Hα line (with EW0 ≳ 800 Å) present in its JWST\r\nNIRSpec spectrum. Hα is dominated by a narrow component and also has a minor broad component indicative of\r\nan active black hole with MBH ≈ 5.6 × 10^6 M⊙. A narrow Hβ emission line is also detected (where the signal-tonoise ratio, S/N, is 8), producing a Balmer decrement (narrow) Hα/Hβ = 11. The rest-frame UV spectral slope is ßspec/uv = - 1.20 ± 0.28. All these features can be ascribed to high dust attenuation. However, no [O III]λ5007 or\r\nany other metal lines are detected in the spectrum, so [O III]5007/Hβ < 0.25, at odds with a simple dust attenuation explanation. Accounting for all the spectral properties requires the model of a starburst with moderate\r\ncolor excess E(B − V )≈0.2–0.5, high gas density (nH ≳ 10^6 cm^−3\r\n), and low- to extremely-low gas/stellar\r\nmetallicities (Z = 0.01–0.1 Z⊙). The demagnified stellar mass is\r\n× 2.25+\r\n0\r\n1\r\n.\r\n.\r\n8\r\n3\r\n3\r\n0 10^7 M , and the stellar-mass surface\r\ndensity is = +\r\n* 418 M pc 310\r\n725 2, similar to that of massive/nuclear star clusters. Pseudo-LRD-NOM provides\r\nevidence of massive black-hole growth occurring in a high-density, dusty starburst that is at the early stages of its\r\nchemical enrichment, and is likely a precursor to a real LRD."}],"researchdata_availability":"no","has_accepted_license":"1","arxiv":1,"file":[{"file_size":2636477,"file_name":"2026_AstrophysicalJour_Caputi.pdf","date_updated":"2026-09-09T12:19:36Z","file_id":"22887","content_type":"application/pdf","creator":"dernst","access_level":"open_access","success":1,"relation":"main_file","date_created":"2026-09-09T12:19:36Z","checksum":"cf878372382ac61b22f679b558bb4e4e"}],"article_number":"203","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","citation":{"mla":"Caputi, Karina I., et al. “Pseudo Little Red Dot: An Active Black Hole Embedded in a Dense and Dusty, Metal-Poor Starburst Galaxy at z = 5.96.” <i>The Astrophysical Journal</i>, vol. 1007, no. 2, 203, IOP Publishing, 2026, doi:<a href=\"https://doi.org/10.3847/1538-4357/ae80b9\">10.3847/1538-4357/ae80b9</a>.","ista":"Caputi KI, Cooper RA, Rinaldi P, Navarro-Carrera R, Iani E, Tumborang AA. 2026. Pseudo Little Red Dot: An active black hole embedded in a dense and dusty, metal-poor starburst galaxy at z = 5.96. The Astrophysical Journal. 1007(2), 203.","ama":"Caputi KI, Cooper RA, Rinaldi P, Navarro-Carrera R, Iani E, Tumborang AA. Pseudo Little Red Dot: An active black hole embedded in a dense and dusty, metal-poor starburst galaxy at z = 5.96. <i>The Astrophysical Journal</i>. 2026;1007(2). doi:<a href=\"https://doi.org/10.3847/1538-4357/ae80b9\">10.3847/1538-4357/ae80b9</a>","short":"K.I. Caputi, R.A. Cooper, P. Rinaldi, R. Navarro-Carrera, E. Iani, A.A. Tumborang, The Astrophysical Journal 1007 (2026).","ieee":"K. I. Caputi, R. A. Cooper, P. Rinaldi, R. Navarro-Carrera, E. Iani, and A. A. Tumborang, “Pseudo Little Red Dot: An active black hole embedded in a dense and dusty, metal-poor starburst galaxy at z = 5.96,” <i>The Astrophysical Journal</i>, vol. 1007, no. 2. IOP Publishing, 2026.","apa":"Caputi, K. I., Cooper, R. A., Rinaldi, P., Navarro-Carrera, R., Iani, E., &#38; Tumborang, A. A. (2026). Pseudo Little Red Dot: An active black hole embedded in a dense and dusty, metal-poor starburst galaxy at z = 5.96. <i>The Astrophysical Journal</i>. IOP Publishing. <a href=\"https://doi.org/10.3847/1538-4357/ae80b9\">https://doi.org/10.3847/1538-4357/ae80b9</a>","chicago":"Caputi, Karina I., Ryan A. Cooper, Pierluigi Rinaldi, Rafael Navarro-Carrera, Edoardo Iani, and Abigail A. Tumborang. “Pseudo Little Red Dot: An Active Black Hole Embedded in a Dense and Dusty, Metal-Poor Starburst Galaxy at z = 5.96.” <i>The Astrophysical Journal</i>. IOP Publishing, 2026. <a href=\"https://doi.org/10.3847/1538-4357/ae80b9\">https://doi.org/10.3847/1538-4357/ae80b9</a>."},"article_type":"original","day":"20","file_date_updated":"2026-09-09T12:19:36Z"},{"keyword":["Dynamic algorithms","Graph algorithms","Directed graphs","Lower bounds","Upper bounds"],"language":[{"iso":"eng"}],"supplementarymaterial":"no","scopus_import":"1","quality_controlled":"1","publication_status":"epub_ahead","researchdata_availability":"no","abstract":[{"text":"Efficient data structures for computing the cutset of a set of nodes in a graph undergoing dynamic edge insertions/deletions are well-studied in undirected graphs. We study this problem in directed graphs and show a reduction from the Online Boolean Matrix-Vector Multiplication Conjecture (OMv) introduced by Henzinger et al. [STOC’15]. We prove conditional on OMv that a dynamic data structure computing the directed cutset of a set of nodes cannot have an amortized time of both O(n2−ε) for a query operation and O(n1−ε) for an update operation, for any constant ε > 0, even when an adversary’s operations are restricted to the incremental or decremental settings. We further give algorithms to match these lower bounds.","lang":"eng"}],"intvolume":"       195","OA_type":"closed access","article_number":"106663","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","ec_funded":1,"day":"30","status":"public","citation":{"chicago":"Hahn, Niklas, Monika Henzinger, and Zofia Stefankovic. “Tight Bounds on the Performance of Dynamic Directed Cutset Data Structures Based on OMv.” <i>Information Processing Letters</i>. Elsevier, 2026. <a href=\"https://doi.org/10.1016/j.ipl.2026.106663\">https://doi.org/10.1016/j.ipl.2026.106663</a>.","apa":"Hahn, N., Henzinger, M., &#38; Stefankovic, Z. (2026). Tight bounds on the performance of dynamic directed cutset data structures based on OMv. <i>Information Processing Letters</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.ipl.2026.106663\">https://doi.org/10.1016/j.ipl.2026.106663</a>","ieee":"N. Hahn, M. Henzinger, and Z. Stefankovic, “Tight bounds on the performance of dynamic directed cutset data structures based on OMv,” <i>Information Processing Letters</i>, vol. 195. Elsevier, 2026.","short":"N. Hahn, M. Henzinger, Z. Stefankovic, Information Processing Letters 195 (2026).","ama":"Hahn N, Henzinger M, Stefankovic Z. Tight bounds on the performance of dynamic directed cutset data structures based on OMv. <i>Information Processing Letters</i>. 2026;195. doi:<a href=\"https://doi.org/10.1016/j.ipl.2026.106663\">10.1016/j.ipl.2026.106663</a>","ista":"Hahn N, Henzinger M, Stefankovic Z. 2026. Tight bounds on the performance of dynamic directed cutset data structures based on OMv. Information Processing Letters. 195, 106663.","mla":"Hahn, Niklas, et al. “Tight Bounds on the Performance of Dynamic Directed Cutset Data Structures Based on OMv.” <i>Information Processing Letters</i>, vol. 195, 106663, Elsevier, 2026, doi:<a href=\"https://doi.org/10.1016/j.ipl.2026.106663\">10.1016/j.ipl.2026.106663</a>."},"article_type":"original","project":[{"name":"IST-BRIDGE: International postdoctoral program","call_identifier":"H2020","grant_number":"101034413","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c"},{"name":"The design and evaluation of modern fully dynamic data structures","_id":"bd9ca328-d553-11ed-ba76-dc4f890cfe62","grant_number":"101019564","call_identifier":"H2020"}],"type":"journal_article","publication":"Information Processing Letters","publisher":"Elsevier","dataavailabilitystatement":"No data was used for the research described in the article.","date_published":"2026-08-30T00:00:00Z","fulldoi":"https://doi.org/10.1016/j.ipl.2026.106663","publication_identifier":{"issn":["0020-0190"]},"das_tickbox":"1","title":"Tight bounds on the performance of dynamic directed cutset data structures based on OMv","article_processing_charge":"No","author":[{"full_name":"Hahn, Niklas","last_name":"Hahn","id":"0a01c7b2-b823-11ed-9928-cc3f874f9ffd","first_name":"Niklas"},{"full_name":"Henzinger, Monika H","last_name":"Henzinger","id":"540c9bbd-f2de-11ec-812d-d04a5be85630","orcid":"0000-0002-5008-6530","first_name":"Monika H"},{"full_name":"Stefankovic, Zofia","last_name":"Stefankovic","first_name":"Zofia"}],"date_created":"2026-09-06T22:01:55Z","doi":"10.1016/j.ipl.2026.106663","department":[{"_id":"MoHe"}],"acknowledgement":"This project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 101034413 and from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (MoDynStruct, No. 101019564) Image 1 dummy alt text. Zofia Stefankovic was partially supported by the ISTernship program of the Institute of Science and Technology Austria and OEAD.","year":"2026","_id":"22812","volume":195,"month":"08","oa_version":"None","date_updated":"2026-09-09T11:55:47Z"}]