[{"department":[{"_id":"ScienComp"}],"publisher":"IST Austria","quality_controlled":"1","citation":{"short":"A. Schlögl, J. Kiss, S. Elefante, eds., Austrian High-Performance-Computing Meeting (AHPC2020), IST Austria, Klosterneuburg, Austria, 2020.","mla":"Schlögl, Alois, et al., editors. <i>Austrian High-Performance-Computing Meeting (AHPC2020)</i>. IST Austria, 2020, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:7474\">10.15479/AT:ISTA:7474</a>.","chicago":"Schlögl, Alois, Janos Kiss, and Stefano Elefante, eds. <i>Austrian High-Performance-Computing Meeting (AHPC2020)</i>. Klosterneuburg, Austria: IST Austria, 2020. <a href=\"https://doi.org/10.15479/AT:ISTA:7474\">https://doi.org/10.15479/AT:ISTA:7474</a>.","ista":"Schlögl A, Kiss J, Elefante S eds. 2020. Austrian High-Performance-Computing meeting (AHPC2020), Klosterneuburg, Austria: IST Austria, 72p.","ama":"Schlögl A, Kiss J, Elefante S, eds. <i>Austrian High-Performance-Computing Meeting (AHPC2020)</i>. Klosterneuburg, Austria: IST Austria; 2020. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:7474\">10.15479/AT:ISTA:7474</a>","ieee":"A. Schlögl, J. Kiss, and S. Elefante, Eds., <i>Austrian High-Performance-Computing meeting (AHPC2020)</i>. Klosterneuburg, Austria: IST Austria, 2020.","apa":"Schlögl, A., Kiss, J., &#38; Elefante, S. (Eds.). (2020). <i>Austrian High-Performance-Computing meeting (AHPC2020)</i>. Presented at the AHPC: Austrian High-Performance-Computing Meeting, Klosterneuburg, Austria: IST Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:7474\">https://doi.org/10.15479/AT:ISTA:7474</a>"},"type":"book_editor","abstract":[{"lang":"eng","text":"This booklet is a collection of abstracts presented at the AHPC conference."}],"_id":"7474","place":"Klosterneuburg, Austria","month":"02","date_created":"2020-02-11T07:59:04Z","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"publication_status":"published","conference":{"start_date":"2020-02-19","location":"Klosterneuburg, Austria","name":"AHPC: Austrian High-Performance-Computing Meeting","end_date":"2020-02-21"},"ddc":["000"],"license":"https://creativecommons.org/licenses/by/4.0/","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_published":"2020-02-19T00:00:00Z","oa":1,"file":[{"relation":"main_file","checksum":"49798edb9e57bbd6be18362d1d7b18a9","content_type":"application/pdf","file_id":"7504","date_updated":"2020-07-14T12:47:59Z","access_level":"open_access","file_size":90899507,"creator":"schloegl","date_created":"2020-02-19T06:53:38Z","file_name":"BOOKLET_AHPC2020.final.pdf"}],"day":"19","doi":"10.15479/AT:ISTA:7474","year":"2020","publication_identifier":{"isbn":["978-3-99078-004-6"]},"page":"72","date_updated":"2023-05-16T07:48:28Z","title":"Austrian High-Performance-Computing meeting (AHPC2020)","has_accepted_license":"1","article_processing_charge":"No","file_date_updated":"2020-07-14T12:47:59Z","status":"public","language":[{"iso":"eng"}],"oa_version":"Published Version","editor":[{"first_name":"Alois","orcid":"0000-0002-5621-8100","id":"45BF87EE-F248-11E8-B48F-1D18A9856A87","full_name":"Schlögl, Alois","last_name":"Schlögl"},{"id":"3D3A06F8-F248-11E8-B48F-1D18A9856A87","full_name":"Kiss, Janos","last_name":"Kiss","first_name":"Janos"},{"first_name":"Stefano","last_name":"Elefante","full_name":"Elefante, Stefano","id":"490F40CE-F248-11E8-B48F-1D18A9856A87"}]},{"intvolume":"       124","date_published":"2020-01-24T00:00:00Z","doi":"10.1103/physrevlett.124.036802","day":"24","oa":1,"article_type":"original","publication_identifier":{"issn":["0031-9007","1079-7114"]},"year":"2020","article_number":"036802","publication":"Physical Review Letters","arxiv":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Preprint","date_updated":"2021-01-12T08:13:48Z","title":"Conductance-matrix symmetries of a three-terminal hybrid device","author":[{"full_name":"Ménard, G. C.","last_name":"Ménard","first_name":"G. C."},{"first_name":"G. L. R.","full_name":"Anselmetti, G. L. R.","last_name":"Anselmetti"},{"last_name":"Martinez","full_name":"Martinez, E. A.","first_name":"E. A."},{"full_name":"Puglia, D.","last_name":"Puglia","first_name":"D."},{"first_name":"F. K.","last_name":"Malinowski","full_name":"Malinowski, F. K."},{"first_name":"J. S.","last_name":"Lee","full_name":"Lee, J. S."},{"full_name":"Choi, S.","last_name":"Choi","first_name":"S."},{"first_name":"M.","full_name":"Pendharkar, M.","last_name":"Pendharkar"},{"first_name":"C. J.","last_name":"Palmstrøm","full_name":"Palmstrøm, C. J."},{"last_name":"Flensberg","full_name":"Flensberg, K.","first_name":"K."},{"first_name":"C. M.","full_name":"Marcus, C. M.","last_name":"Marcus"},{"last_name":"Casparis","full_name":"Casparis, L.","first_name":"L."},{"id":"4AD6785A-F248-11E8-B48F-1D18A9856A87","last_name":"Higginbotham","full_name":"Higginbotham, Andrew P","orcid":"0000-0003-2607-2363","first_name":"Andrew P"}],"article_processing_charge":"No","language":[{"iso":"eng"}],"status":"public","quality_controlled":"1","extern":"1","abstract":[{"text":"We present conductance-matrix measurements of a three-terminal superconductor-semiconductor hybrid device consisting of two normal leads and one superconducting lead. Using a symmetry decomposition of the conductance, we find that antisymmetric components of pairs of local and nonlocal conductances qualitatively match at energies below the superconducting gap, and we compare this finding with symmetry relations based on a noninteracting scattering matrix approach. Further, the local charge character of Andreev bound states is extracted from the symmetry-decomposed conductance data and is found to be similar at both ends of the device and tunable with gate voltage. Finally, we measure the conductance matrix as a function of magnetic field and identify correlated splittings in low-energy features, demonstrating how conductance-matrix measurements can complement traditional single-probe measurements in the search for Majorana zero modes.","lang":"eng"}],"type":"journal_article","citation":{"short":"G.C. Ménard, G.L.R. Anselmetti, E.A. Martinez, D. Puglia, F.K. Malinowski, J.S. Lee, S. Choi, M. Pendharkar, C.J. Palmstrøm, K. Flensberg, C.M. Marcus, L. Casparis, A.P. Higginbotham, Physical Review Letters 124 (2020).","chicago":"Ménard, G. C., G. L. R. Anselmetti, E. A. Martinez, D. Puglia, F. K. Malinowski, J. S. Lee, S. Choi, et al. “Conductance-Matrix Symmetries of a Three-Terminal Hybrid Device.” <i>Physical Review Letters</i>. APS, 2020. <a href=\"https://doi.org/10.1103/physrevlett.124.036802\">https://doi.org/10.1103/physrevlett.124.036802</a>.","ista":"Ménard GC, Anselmetti GLR, Martinez EA, Puglia D, Malinowski FK, Lee JS, Choi S, Pendharkar M, Palmstrøm CJ, Flensberg K, Marcus CM, Casparis L, Higginbotham AP. 2020. Conductance-matrix symmetries of a three-terminal hybrid device. Physical Review Letters. 124(3), 036802.","mla":"Ménard, G. C., et al. “Conductance-Matrix Symmetries of a Three-Terminal Hybrid Device.” <i>Physical Review Letters</i>, vol. 124, no. 3, 036802, APS, 2020, doi:<a href=\"https://doi.org/10.1103/physrevlett.124.036802\">10.1103/physrevlett.124.036802</a>.","ama":"Ménard GC, Anselmetti GLR, Martinez EA, et al. Conductance-matrix symmetries of a three-terminal hybrid device. <i>Physical Review Letters</i>. 2020;124(3). doi:<a href=\"https://doi.org/10.1103/physrevlett.124.036802\">10.1103/physrevlett.124.036802</a>","apa":"Ménard, G. C., Anselmetti, G. L. R., Martinez, E. A., Puglia, D., Malinowski, F. K., Lee, J. S., … Higginbotham, A. P. (2020). Conductance-matrix symmetries of a three-terminal hybrid device. <i>Physical Review Letters</i>. APS. <a href=\"https://doi.org/10.1103/physrevlett.124.036802\">https://doi.org/10.1103/physrevlett.124.036802</a>","ieee":"G. C. Ménard <i>et al.</i>, “Conductance-matrix symmetries of a three-terminal hybrid device,” <i>Physical Review Letters</i>, vol. 124, no. 3. APS, 2020."},"volume":124,"main_file_link":[{"url":"https://arxiv.org/abs/1905.05505","open_access":"1"}],"publisher":"APS","date_created":"2020-02-11T08:50:02Z","publication_status":"published","external_id":{"arxiv":["1905.05505"]},"_id":"7477","issue":"3","month":"01"},{"oa_version":"Preprint","language":[{"iso":"eng"}],"status":"public","article_processing_charge":"No","author":[{"first_name":"Jeroen","last_name":"Danon","full_name":"Danon, Jeroen"},{"last_name":"Hellenes","full_name":"Hellenes, Anna Birk","first_name":"Anna Birk"},{"last_name":"Hansen","full_name":"Hansen, Esben Bork","first_name":"Esben Bork"},{"last_name":"Casparis","full_name":"Casparis, Lucas","first_name":"Lucas"},{"last_name":"Higginbotham","full_name":"Higginbotham, Andrew P","id":"4AD6785A-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-2607-2363","first_name":"Andrew P"},{"first_name":"Karsten","last_name":"Flensberg","full_name":"Flensberg, Karsten"}],"title":"Nonlocal conductance spectroscopy of Andreev bound states: Symmetry relations and BCS charges","date_updated":"2021-01-12T08:13:48Z","article_number":"036801","article_type":"original","year":"2020","publication_identifier":{"issn":["0031-9007","1079-7114"]},"day":"24","doi":"10.1103/physrevlett.124.036801","oa":1,"intvolume":"       124","date_published":"2020-01-24T00:00:00Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication":"Physical Review Letters","arxiv":1,"external_id":{"arxiv":["1905.05438"]},"publication_status":"published","date_created":"2020-02-11T08:55:40Z","month":"01","issue":"3","_id":"7478","type":"journal_article","abstract":[{"lang":"eng","text":"Two-terminal conductance spectroscopy of superconducting devices is a common tool for probing Andreev and Majorana bound states. Here, we study theoretically a three-terminal setup, with two normal leads coupled to a grounded superconducting terminal. Using a single-electron scattering matrix, we derive the subgap conductance matrix for the normal leads and discuss its symmetries. In particular, we show that the local and the nonlocal elements of the conductance matrix have pairwise identical antisymmetric components. Moreover, we find that the nonlocal elements are directly related to the local BCS charges of the bound states close to the normal probes and we show how the BCS charge of overlapping Majorana bound states can be extracted from experiments."}],"extern":"1","citation":{"ista":"Danon J, Hellenes AB, Hansen EB, Casparis L, Higginbotham AP, Flensberg K. 2020. Nonlocal conductance spectroscopy of Andreev bound states: Symmetry relations and BCS charges. Physical Review Letters. 124(3), 036801.","chicago":"Danon, Jeroen, Anna Birk Hellenes, Esben Bork Hansen, Lucas Casparis, Andrew P Higginbotham, and Karsten Flensberg. “Nonlocal Conductance Spectroscopy of Andreev Bound States: Symmetry Relations and BCS Charges.” <i>Physical Review Letters</i>. APS, 2020. <a href=\"https://doi.org/10.1103/physrevlett.124.036801\">https://doi.org/10.1103/physrevlett.124.036801</a>.","mla":"Danon, Jeroen, et al. “Nonlocal Conductance Spectroscopy of Andreev Bound States: Symmetry Relations and BCS Charges.” <i>Physical Review Letters</i>, vol. 124, no. 3, 036801, APS, 2020, doi:<a href=\"https://doi.org/10.1103/physrevlett.124.036801\">10.1103/physrevlett.124.036801</a>.","apa":"Danon, J., Hellenes, A. B., Hansen, E. B., Casparis, L., Higginbotham, A. P., &#38; Flensberg, K. (2020). Nonlocal conductance spectroscopy of Andreev bound states: Symmetry relations and BCS charges. <i>Physical Review Letters</i>. APS. <a href=\"https://doi.org/10.1103/physrevlett.124.036801\">https://doi.org/10.1103/physrevlett.124.036801</a>","ama":"Danon J, Hellenes AB, Hansen EB, Casparis L, Higginbotham AP, Flensberg K. Nonlocal conductance spectroscopy of Andreev bound states: Symmetry relations and BCS charges. <i>Physical Review Letters</i>. 2020;124(3). doi:<a href=\"https://doi.org/10.1103/physrevlett.124.036801\">10.1103/physrevlett.124.036801</a>","ieee":"J. Danon, A. B. Hellenes, E. B. Hansen, L. Casparis, A. P. Higginbotham, and K. Flensberg, “Nonlocal conductance spectroscopy of Andreev bound states: Symmetry relations and BCS charges,” <i>Physical Review Letters</i>, vol. 124, no. 3. APS, 2020.","short":"J. Danon, A.B. Hellenes, E.B. Hansen, L. Casparis, A.P. Higginbotham, K. Flensberg, Physical Review Letters 124 (2020)."},"quality_controlled":"1","publisher":"APS","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1905.05438"}],"volume":124},{"date_created":"2020-02-16T23:00:49Z","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"publication_status":"published","external_id":{"isi":["000522551606028"]},"_id":"7488","scopus_import":"1","issue":"3","month":"02","quality_controlled":"1","citation":{"short":"A. Latorre-Pellicer, Á. Ascaso, L. Trujillano, M. Gil-Salvador, M. Arnedo, C. Lucia-Campos, R. Antoñanzas-Pérez, I. Marcos-Alcalde, I. Parenti, G. Bueno-Lozano, A. Musio, B. Puisac, F.J. Kaiser, F.J. Ramos, P. Gómez-Puertas, J. Pié, International Journal of Molecular Sciences 21 (2020).","ama":"Latorre-Pellicer A, Ascaso Á, Trujillano L, et al. Evaluating Face2Gene as a tool to identify Cornelia de Lange syndrome by facial phenotypes. <i>International Journal of Molecular Sciences</i>. 2020;21(3). doi:<a href=\"https://doi.org/10.3390/ijms21031042\">10.3390/ijms21031042</a>","ieee":"A. Latorre-Pellicer <i>et al.</i>, “Evaluating Face2Gene as a tool to identify Cornelia de Lange syndrome by facial phenotypes,” <i>International Journal of Molecular Sciences</i>, vol. 21, no. 3. MDPI, 2020.","apa":"Latorre-Pellicer, A., Ascaso, Á., Trujillano, L., Gil-Salvador, M., Arnedo, M., Lucia-Campos, C., … Pié, J. (2020). Evaluating Face2Gene as a tool to identify Cornelia de Lange syndrome by facial phenotypes. <i>International Journal of Molecular Sciences</i>. MDPI. <a href=\"https://doi.org/10.3390/ijms21031042\">https://doi.org/10.3390/ijms21031042</a>","chicago":"Latorre-Pellicer, Ana, Ángela Ascaso, Laura Trujillano, Marta Gil-Salvador, Maria Arnedo, Cristina Lucia-Campos, Rebeca Antoñanzas-Pérez, et al. “Evaluating Face2Gene as a Tool to Identify Cornelia de Lange Syndrome by Facial Phenotypes.” <i>International Journal of Molecular Sciences</i>. MDPI, 2020. <a href=\"https://doi.org/10.3390/ijms21031042\">https://doi.org/10.3390/ijms21031042</a>.","ista":"Latorre-Pellicer A, Ascaso Á, Trujillano L, Gil-Salvador M, Arnedo M, Lucia-Campos C, Antoñanzas-Pérez R, Marcos-Alcalde I, Parenti I, Bueno-Lozano G, Musio A, Puisac B, Kaiser FJ, Ramos FJ, Gómez-Puertas P, Pié J. 2020. Evaluating Face2Gene as a tool to identify Cornelia de Lange syndrome by facial phenotypes. International Journal of Molecular Sciences. 21(3), 1042.","mla":"Latorre-Pellicer, Ana, et al. “Evaluating Face2Gene as a Tool to Identify Cornelia de Lange Syndrome by Facial Phenotypes.” <i>International Journal of Molecular Sciences</i>, vol. 21, no. 3, 1042, MDPI, 2020, doi:<a href=\"https://doi.org/10.3390/ijms21031042\">10.3390/ijms21031042</a>."},"type":"journal_article","abstract":[{"lang":"eng","text":"Characteristic or classic phenotype of Cornelia de Lange syndrome (CdLS) is associated with a recognisable facial pattern. However, the heterogeneity in causal genes and the presence of overlapping syndromes have made it increasingly difficult to diagnose only by clinical features. DeepGestalt technology, and its app Face2Gene, is having a growing impact on the diagnosis and management of genetic diseases by analysing the features of affected individuals. Here, we performed a phenotypic study on a cohort of 49 individuals harbouring causative variants in known CdLS genes in order to evaluate Face2Gene utility and sensitivity in the clinical diagnosis of CdLS. Based on the profile images of patients, a diagnosis of CdLS was within the top five predicted syndromes for 97.9% of our cases and even listed as first prediction for 83.7%. The age of patients did not seem to affect the prediction accuracy, whereas our results indicate a correlation between the clinical score and affected genes. Furthermore, each gene presents a different pattern recognition that may be used to develop new neural networks with the goal of separating different genetic subtypes in CdLS. Overall, we conclude that computer-assisted image analysis based on deep learning could support the clinical diagnosis of CdLS."}],"department":[{"_id":"GaNo"}],"volume":21,"publisher":"MDPI","corr_author":"1","oa_version":"Published Version","date_updated":"2025-07-10T11:54:41Z","author":[{"full_name":"Latorre-Pellicer, Ana","last_name":"Latorre-Pellicer","first_name":"Ana"},{"last_name":"Ascaso","full_name":"Ascaso, Ángela","first_name":"Ángela"},{"last_name":"Trujillano","full_name":"Trujillano, Laura","first_name":"Laura"},{"first_name":"Marta","full_name":"Gil-Salvador, Marta","last_name":"Gil-Salvador"},{"first_name":"Maria","last_name":"Arnedo","full_name":"Arnedo, Maria"},{"first_name":"Cristina","last_name":"Lucia-Campos","full_name":"Lucia-Campos, Cristina"},{"first_name":"Rebeca","last_name":"Antoñanzas-Pérez","full_name":"Antoñanzas-Pérez, Rebeca"},{"first_name":"Iñigo","full_name":"Marcos-Alcalde, Iñigo","last_name":"Marcos-Alcalde"},{"full_name":"Parenti, Ilaria","last_name":"Parenti","id":"D93538B0-5B71-11E9-AC62-02EBE5697425","first_name":"Ilaria"},{"full_name":"Bueno-Lozano, Gloria","last_name":"Bueno-Lozano","first_name":"Gloria"},{"first_name":"Antonio","full_name":"Musio, Antonio","last_name":"Musio"},{"last_name":"Puisac","full_name":"Puisac, Beatriz","first_name":"Beatriz"},{"first_name":"Frank J.","last_name":"Kaiser","full_name":"Kaiser, Frank J."},{"last_name":"Ramos","full_name":"Ramos, Feliciano J.","first_name":"Feliciano J."},{"last_name":"Gómez-Puertas","full_name":"Gómez-Puertas, Paulino","first_name":"Paulino"},{"full_name":"Pié, Juan","last_name":"Pié","first_name":"Juan"}],"title":"Evaluating Face2Gene as a tool to identify Cornelia de Lange syndrome by facial phenotypes","article_processing_charge":"No","has_accepted_license":"1","file_date_updated":"2020-07-14T12:47:59Z","status":"public","language":[{"iso":"eng"}],"date_published":"2020-02-04T00:00:00Z","intvolume":"        21","oa":1,"file":[{"access_level":"open_access","creator":"dernst","file_size":4271234,"date_created":"2020-02-18T07:49:22Z","file_name":"2020_IntMolecSciences_Latorre.pdf","checksum":"0e6658c4fe329d55d4d9bef01c5b15d0","content_type":"application/pdf","relation":"main_file","date_updated":"2020-07-14T12:47:59Z","file_id":"7496"}],"doi":"10.3390/ijms21031042","day":"04","year":"2020","article_type":"original","publication_identifier":{"issn":["1661-6596"],"eissn":["1422-0067"]},"article_number":"1042","isi":1,"publication":"International Journal of Molecular Sciences","ddc":["570"],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"month":"01","scopus_import":"1","_id":"7490","external_id":{"isi":["000514104100001"],"pmid":["31971511"]},"publication_status":"published","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"date_created":"2020-02-16T23:00:50Z","publisher":"eLife Sciences Publications","volume":9,"department":[{"_id":"JiFr"},{"_id":"GaTk"},{"_id":"EM-Fac"},{"_id":"SyCr"}],"pmid":1,"abstract":[{"lang":"eng","text":"In plants, clathrin mediated endocytosis (CME) represents the major route for cargo internalisation from the cell surface. It has been assumed to operate in an evolutionary conserved manner as in yeast and animals. Here we report characterisation of ultrastructure, dynamics and mechanisms of plant CME as allowed by our advancement in electron microscopy and quantitative live imaging techniques. Arabidopsis CME appears to follow the constant curvature model and the bona fide CME population generates vesicles of a predominantly hexagonal-basket type; larger and with faster kinetics than in other models. Contrary to the existing paradigm, actin is dispensable for CME events at the plasma membrane but plays a unique role in collecting endocytic vesicles, sorting of internalised cargos and directional endosome movement that itself actively promote CME events. Internalized vesicles display a strongly delayed and sequential uncoating. These unique features highlight the independent evolution of the plant CME mechanism during the autonomous rise of multicellularity in eukaryotes."}],"type":"journal_article","citation":{"short":"M. Narasimhan, A.J. Johnson, R. Prizak, W. Kaufmann, S. Tan, B.E. Casillas Perez, J. Friml, ELife 9 (2020).","ieee":"M. Narasimhan <i>et al.</i>, “Evolutionarily unique mechanistic framework of clathrin-mediated endocytosis in plants,” <i>eLife</i>, vol. 9. eLife Sciences Publications, 2020.","ama":"Narasimhan M, Johnson AJ, Prizak R, et al. Evolutionarily unique mechanistic framework of clathrin-mediated endocytosis in plants. <i>eLife</i>. 2020;9. doi:<a href=\"https://doi.org/10.7554/eLife.52067\">10.7554/eLife.52067</a>","apa":"Narasimhan, M., Johnson, A. J., Prizak, R., Kaufmann, W., Tan, S., Casillas Perez, B. E., &#38; Friml, J. (2020). Evolutionarily unique mechanistic framework of clathrin-mediated endocytosis in plants. <i>ELife</i>. eLife Sciences Publications. <a href=\"https://doi.org/10.7554/eLife.52067\">https://doi.org/10.7554/eLife.52067</a>","ista":"Narasimhan M, Johnson AJ, Prizak R, Kaufmann W, Tan S, Casillas Perez BE, Friml J. 2020. Evolutionarily unique mechanistic framework of clathrin-mediated endocytosis in plants. eLife. 9, e52067.","chicago":"Narasimhan, Madhumitha, Alexander J Johnson, Roshan Prizak, Walter Kaufmann, Shutang Tan, Barbara E Casillas Perez, and Jiří Friml. “Evolutionarily Unique Mechanistic Framework of Clathrin-Mediated Endocytosis in Plants.” <i>ELife</i>. eLife Sciences Publications, 2020. <a href=\"https://doi.org/10.7554/eLife.52067\">https://doi.org/10.7554/eLife.52067</a>.","mla":"Narasimhan, Madhumitha, et al. “Evolutionarily Unique Mechanistic Framework of Clathrin-Mediated Endocytosis in Plants.” <i>ELife</i>, vol. 9, e52067, eLife Sciences Publications, 2020, doi:<a href=\"https://doi.org/10.7554/eLife.52067\">10.7554/eLife.52067</a>."},"quality_controlled":"1","language":[{"iso":"eng"}],"status":"public","file_date_updated":"2020-07-14T12:47:59Z","article_processing_charge":"No","has_accepted_license":"1","author":[{"full_name":"Narasimhan, Madhumitha","last_name":"Narasimhan","id":"44BF24D0-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8600-0671","first_name":"Madhumitha"},{"orcid":"0000-0002-2739-8843","id":"46A62C3A-F248-11E8-B48F-1D18A9856A87","full_name":"Johnson, Alexander J","last_name":"Johnson","first_name":"Alexander J"},{"first_name":"Roshan","last_name":"Prizak","full_name":"Prizak, Roshan","id":"4456104E-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Walter","id":"3F99E422-F248-11E8-B48F-1D18A9856A87","last_name":"Kaufmann","full_name":"Kaufmann, Walter","orcid":"0000-0001-9735-5315"},{"first_name":"Shutang","id":"2DE75584-F248-11E8-B48F-1D18A9856A87","last_name":"Tan","full_name":"Tan, Shutang","orcid":"0000-0002-0471-8285"},{"first_name":"Barbara E","last_name":"Casillas Perez","full_name":"Casillas Perez, Barbara E","id":"351ED2AA-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Jiří","id":"4159519E-F248-11E8-B48F-1D18A9856A87","last_name":"Friml","full_name":"Friml, Jiří","orcid":"0000-0002-8302-7596"}],"title":"Evolutionarily unique mechanistic framework of clathrin-mediated endocytosis in plants","date_updated":"2025-04-14T07:45:03Z","oa_version":"Published Version","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","project":[{"_id":"261099A6-B435-11E9-9278-68D0E5697425","name":"Tracing Evolution of Auxin Transport and Polarity in Plants","grant_number":"742985","call_identifier":"H2020"},{"call_identifier":"FWF","_id":"26538374-B435-11E9-9278-68D0E5697425","name":"Molecular mechanisms of endocytic cargo recognition in plants","grant_number":"I03630"}],"ddc":["570","580"],"publication":"eLife","isi":1,"acknowledged_ssus":[{"_id":"LifeSc"},{"_id":"Bio"},{"_id":"EM-Fac"}],"article_number":"e52067","ec_funded":1,"article_type":"original","publication_identifier":{"eissn":["2050-084X"]},"year":"2020","doi":"10.7554/eLife.52067","day":"23","oa":1,"file":[{"file_id":"7494","date_updated":"2020-07-14T12:47:59Z","relation":"main_file","content_type":"application/pdf","checksum":"2052daa4be5019534f3a42f200a09f32","date_created":"2020-02-18T07:21:16Z","file_name":"2020_eLife_Narasimhan.pdf","file_size":7247468,"creator":"dernst","access_level":"open_access"}],"intvolume":"         9","date_published":"2020-01-23T00:00:00Z"},{"page":"1433-1451","date_updated":"2023-08-18T06:44:16Z","author":[{"full_name":"Han, L","last_name":"Han","first_name":"L"},{"first_name":"X","last_name":"Zhou","full_name":"Zhou, X"},{"first_name":"Y","full_name":"Zhao, Y","last_name":"Zhao"},{"first_name":"S","full_name":"Zhu, S","last_name":"Zhu"},{"last_name":"Wu","full_name":"Wu, L","first_name":"L"},{"full_name":"He, Y","last_name":"He","first_name":"Y"},{"first_name":"X","last_name":"Ping","full_name":"Ping, X"},{"last_name":"Lu","full_name":"Lu, X","first_name":"X"},{"first_name":"W","last_name":"Huang","full_name":"Huang, W"},{"first_name":"J","last_name":"Qian","full_name":"Qian, J"},{"first_name":"L","full_name":"Zhang, L","last_name":"Zhang"},{"full_name":"Jiang, X","last_name":"Jiang","first_name":"X"},{"first_name":"D","full_name":"Zhu, D","last_name":"Zhu"},{"last_name":"Luo","full_name":"Luo, C","first_name":"C"},{"first_name":"S","last_name":"Li","full_name":"Li, S"},{"full_name":"Dong, Q","last_name":"Dong","first_name":"Q"},{"last_name":"Fu","full_name":"Fu, Q","first_name":"Q"},{"last_name":"Deng","full_name":"Deng, K","first_name":"K"},{"full_name":"Wang, X","last_name":"Wang","first_name":"X"},{"full_name":"Wang, L","last_name":"Wang","first_name":"L"},{"last_name":"Peng","full_name":"Peng, S","first_name":"S"},{"first_name":"J","last_name":"Wu","full_name":"Wu, J"},{"first_name":"W","last_name":"Li","full_name":"Li, W"},{"first_name":"Jiří","orcid":"0000-0002-8302-7596","id":"4159519E-F248-11E8-B48F-1D18A9856A87","last_name":"Friml","full_name":"Friml, Jiří"},{"last_name":"Zhu","full_name":"Zhu, Y","first_name":"Y"},{"full_name":"He, X","last_name":"He","first_name":"X"},{"last_name":"Du","full_name":"Du, Y","first_name":"Y"}],"title":"Colonization of endophyte Acremonium sp. D212 in Panax notoginseng and rice mediated by auxin and jasmonic acid","article_processing_charge":"No","language":[{"iso":"eng"}],"status":"public","oa_version":"Published Version","isi":1,"publication":"Journal of Integrative Plant Biology","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","date_published":"2020-09-01T00:00:00Z","intvolume":"        62","oa":1,"doi":"10.1111/jipb.12905","day":"01","acknowledgement":"We thank Professor Jianqiang Wu (Kunming Institute of Botany, Chinese Academy of Sciences) for providing generous support with the IAA and JA measurements. We thank Professor Guohua Xu (Nanjing Agricultural University) for generously providing the Nipponbare rice expressing DR5::GUS. We thank Professor Muyuan Zhu (Zhejiang University) for generously providing a rice line expressing 35S::miR393b. We thank Professor Yinong Yang (Pennsylvania State University) for generously providing the rice line coi1-18. This work was supported by grants from the National Natural Science Foundation of China (31660501, 31460453, 31860064 and 31470382), the Major Special Program for Scientific Research, Education Department of Yunnan Province (ZD2015005), the Project sponsored by SRF for ROCS, SEM ([2013] 1792), the Major Science and Technique Programs in Yunnan Province (2016ZF001), the Key Projects of the Applied Basic Research Plan of Yunnan Province (2017FA018), the National Key R&D Program of China (2018YFD0201100) and the China Agriculture Research System (CARS-21).","article_type":"original","year":"2020","publication_identifier":{"issn":["1672-9072"],"eissn":["1744-7909"]},"_id":"7497","issue":"9","scopus_import":"1","month":"09","date_created":"2020-02-18T10:02:25Z","publication_status":"published","external_id":{"isi":["000515803000001"],"pmid":["31912615"]},"department":[{"_id":"JiFr"}],"volume":62,"main_file_link":[{"url":"https://doi.org/10.1111/jipb.12905","open_access":"1"}],"publisher":"Wiley","quality_controlled":"1","citation":{"ista":"Han L, Zhou X, Zhao Y, Zhu S, Wu L, He Y, Ping X, Lu X, Huang W, Qian J, Zhang L, Jiang X, Zhu D, Luo C, Li S, Dong Q, Fu Q, Deng K, Wang X, Wang L, Peng S, Wu J, Li W, Friml J, Zhu Y, He X, Du Y. 2020. Colonization of endophyte Acremonium sp. D212 in Panax notoginseng and rice mediated by auxin and jasmonic acid. Journal of Integrative Plant Biology. 62(9), 1433–1451.","chicago":"Han, L, X Zhou, Y Zhao, S Zhu, L Wu, Y He, X Ping, et al. “Colonization of Endophyte Acremonium Sp. D212 in Panax Notoginseng and Rice Mediated by Auxin and Jasmonic Acid.” <i>Journal of Integrative Plant Biology</i>. Wiley, 2020. <a href=\"https://doi.org/10.1111/jipb.12905\">https://doi.org/10.1111/jipb.12905</a>.","mla":"Han, L., et al. “Colonization of Endophyte Acremonium Sp. D212 in Panax Notoginseng and Rice Mediated by Auxin and Jasmonic Acid.” <i>Journal of Integrative Plant Biology</i>, vol. 62, no. 9, Wiley, 2020, pp. 1433–51, doi:<a href=\"https://doi.org/10.1111/jipb.12905\">10.1111/jipb.12905</a>.","ieee":"L. Han <i>et al.</i>, “Colonization of endophyte Acremonium sp. D212 in Panax notoginseng and rice mediated by auxin and jasmonic acid,” <i>Journal of Integrative Plant Biology</i>, vol. 62, no. 9. Wiley, pp. 1433–1451, 2020.","ama":"Han L, Zhou X, Zhao Y, et al. Colonization of endophyte Acremonium sp. D212 in Panax notoginseng and rice mediated by auxin and jasmonic acid. <i>Journal of Integrative Plant Biology</i>. 2020;62(9):1433-1451. doi:<a href=\"https://doi.org/10.1111/jipb.12905\">10.1111/jipb.12905</a>","apa":"Han, L., Zhou, X., Zhao, Y., Zhu, S., Wu, L., He, Y., … Du, Y. (2020). Colonization of endophyte Acremonium sp. D212 in Panax notoginseng and rice mediated by auxin and jasmonic acid. <i>Journal of Integrative Plant Biology</i>. Wiley. <a href=\"https://doi.org/10.1111/jipb.12905\">https://doi.org/10.1111/jipb.12905</a>","short":"L. Han, X. Zhou, Y. Zhao, S. Zhu, L. Wu, Y. He, X. Ping, X. Lu, W. Huang, J. Qian, L. Zhang, X. Jiang, D. Zhu, C. Luo, S. Li, Q. Dong, Q. Fu, K. Deng, X. Wang, L. Wang, S. Peng, J. Wu, W. Li, J. Friml, Y. Zhu, X. He, Y. Du, Journal of Integrative Plant Biology 62 (2020) 1433–1451."},"pmid":1,"abstract":[{"lang":"eng","text":"Endophytic fungi can be beneficial to plant growth. However, the molecular mechanisms underlying colonization of Acremonium spp. remain unclear. In this study, a novel endophytic Acremonium strain was isolated from the buds of Panax notoginseng and named Acremonium sp. D212. The Acremonium sp. D212 could colonize the roots of P. notoginseng, enhance the resistance of P. notoginseng to root rot disease, and promote root growth and saponin biosynthesis in P. notoginseng. Acremonium sp. D212 could secrete indole‐3‐acetic acid (IAA) and jasmonic acid (JA), and inoculation with the fungus increased the endogenous levels of IAA and JA in P. notoginseng. Colonization of the Acremonium sp. D212 in the roots of the rice line Nipponbare was dependent on the concentration of methyl jasmonate (MeJA) (2 to 15 μM) and 1‐naphthalenacetic acid (NAA) (10 to 20 μM). Moreover, the roots of the JA signalling‐defective coi1‐18 mutant were colonized by Acremonium sp. D212 to a lesser degree than those of the wild‐type Nipponbare and miR393b‐overexpressing lines, and the colonization was rescued by MeJA but not by NAA. It suggests that the cross‐talk between JA signalling and the auxin biosynthetic pathway plays a crucial role in the colonization of Acremonium sp. D212 in host plants."}],"type":"journal_article"},{"arxiv":1,"publication":"24th European Conference on Artificial Intelligence","isi":1,"project":[{"call_identifier":"H2020","_id":"260C2330-B435-11E9-9278-68D0E5697425","name":"ISTplus - Postdoctoral Fellowships","grant_number":"754411"},{"grant_number":"S 11407_N23","_id":"25832EC2-B435-11E9-9278-68D0E5697425","name":"Rigorous Systems Engineering","call_identifier":"FWF"},{"name":"Formal methods for the design and analysis of complex systems","_id":"25F42A32-B435-11E9-9278-68D0E5697425","grant_number":"Z211","call_identifier":"FWF"}],"license":"https://creativecommons.org/licenses/by-nc/4.0/","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","ddc":["000"],"day":"24","doi":"10.3233/FAIA200375","file":[{"date_created":"2020-09-21T07:12:32Z","file_name":"2020_ECAI_Henzinger.pdf","success":1,"creator":"dernst","file_size":1692214,"access_level":"open_access","date_updated":"2020-09-21T07:12:32Z","file_id":"8540","checksum":"80642fa0b6cd7da95dcd87d63789ad5e","content_type":"application/pdf","relation":"main_file"}],"oa":1,"intvolume":"       325","date_published":"2020-02-24T00:00:00Z","ec_funded":1,"acknowledgement":"We thank Christoph Lampert and Nikolaus Mayer for fruitful discussions. This research was supported in part by the Austrian Science Fund (FWF) under grants S11402-N23 (RiSE/SHiNE) and Z211-N23 (Wittgenstein Award) and the European Union’s Horizon 2020 research and innovation programme under the Marie SkłodowskaCurie grant agreement No. 754411.","year":"2020","title":"Outside the box: Abstraction-based monitoring of neural networks","author":[{"first_name":"Thomas A","orcid":"0000-0002-2985-7724","id":"40876CD8-F248-11E8-B48F-1D18A9856A87","full_name":"Henzinger, Thomas A","last_name":"Henzinger"},{"first_name":"Anna","id":"CBA4D1A8-0FE8-11E9-BDE6-07BFE5697425","last_name":"Lukina","full_name":"Lukina, Anna"},{"last_name":"Schilling","full_name":"Schilling, Christian","id":"3A2F4DCE-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-3658-1065","first_name":"Christian"}],"date_updated":"2025-04-15T06:26:13Z","page":"2433-2440","status":"public","language":[{"iso":"eng"}],"file_date_updated":"2020-09-21T07:12:32Z","has_accepted_license":"1","article_processing_charge":"No","oa_version":"Published Version","volume":325,"department":[{"_id":"ToHe"}],"corr_author":"1","publisher":"IOS Press","abstract":[{"lang":"eng","text":"Neural networks have demonstrated unmatched performance in a range of classification tasks. Despite numerous efforts of the research community, novelty detection remains one of the significant limitations of neural networks. The ability to identify previously unseen inputs as novel is crucial for our understanding of the decisions made by neural networks. At runtime, inputs not falling into any of the categories learned during training cannot be classified correctly by the neural network. Existing approaches treat the neural network as a black box and try to detect novel inputs based on the confidence of the output predictions. However, neural networks are not trained to reduce their confidence for novel inputs, which limits the effectiveness of these approaches. We propose a framework to monitor a neural network by observing the hidden layers. We employ a common abstraction from program analysis - boxes - to identify novel behaviors in the monitored layers, i.e., inputs that cause behaviors outside the box. For each neuron, the boxes range over the values seen in training. The framework is efficient and flexible to achieve a desired trade-off between raising false warnings and detecting novel inputs. We illustrate the performance and the robustness to variability in the unknown classes on popular image-classification benchmarks."}],"type":"conference","citation":{"short":"T.A. Henzinger, A. Lukina, C. Schilling, in:, 24th European Conference on Artificial Intelligence, IOS Press, 2020, pp. 2433–2440.","ieee":"T. A. Henzinger, A. Lukina, and C. Schilling, “Outside the box: Abstraction-based monitoring of neural networks,” in <i>24th European Conference on Artificial Intelligence</i>, Santiago de Compostela, Spain, 2020, vol. 325, pp. 2433–2440.","ama":"Henzinger TA, Lukina A, Schilling C. Outside the box: Abstraction-based monitoring of neural networks. In: <i>24th European Conference on Artificial Intelligence</i>. Vol 325. IOS Press; 2020:2433-2440. doi:<a href=\"https://doi.org/10.3233/FAIA200375\">10.3233/FAIA200375</a>","apa":"Henzinger, T. A., Lukina, A., &#38; Schilling, C. (2020). Outside the box: Abstraction-based monitoring of neural networks. In <i>24th European Conference on Artificial Intelligence</i> (Vol. 325, pp. 2433–2440). Santiago de Compostela, Spain: IOS Press. <a href=\"https://doi.org/10.3233/FAIA200375\">https://doi.org/10.3233/FAIA200375</a>","chicago":"Henzinger, Thomas A, Anna Lukina, and Christian Schilling. “Outside the Box: Abstraction-Based Monitoring of Neural Networks.” In <i>24th European Conference on Artificial Intelligence</i>, 325:2433–40. IOS Press, 2020. <a href=\"https://doi.org/10.3233/FAIA200375\">https://doi.org/10.3233/FAIA200375</a>.","ista":"Henzinger TA, Lukina A, Schilling C. 2020. Outside the box: Abstraction-based monitoring of neural networks. 24th European Conference on Artificial Intelligence. ECAI: European Conference on Artificial Intelligence, Frontiers in Artificial Intelligence and Applications, vol. 325, 2433–2440.","mla":"Henzinger, Thomas A., et al. “Outside the Box: Abstraction-Based Monitoring of Neural Networks.” <i>24th European Conference on Artificial Intelligence</i>, vol. 325, IOS Press, 2020, pp. 2433–40, doi:<a href=\"https://doi.org/10.3233/FAIA200375\">10.3233/FAIA200375</a>."},"quality_controlled":"1","_id":"7505","month":"02","scopus_import":"1","publication_status":"published","tmp":{"short":"CC BY-NC (4.0)","image":"/images/cc_by_nc.png","legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)"},"date_created":"2020-02-21T16:44:03Z","conference":{"end_date":"2020-09-08","location":"Santiago de Compostela, Spain","name":"ECAI: European Conference on Artificial Intelligence","start_date":"2020-08-29"},"alternative_title":["Frontiers in Artificial Intelligence and Applications"],"external_id":{"arxiv":["1911.09032"],"isi":["000650971303002"]}},{"publication":"Journal of Statistical Physics","arxiv":1,"isi":1,"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","project":[{"_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854","name":"IST Austria Open Access Fund"},{"call_identifier":"H2020","grant_number":"754411","name":"ISTplus - Postdoctoral Fellowships","_id":"260C2330-B435-11E9-9278-68D0E5697425"}],"ddc":["510"],"doi":"10.1007/s10955-020-02500-8","day":"21","oa":1,"file":[{"access_level":"open_access","file_name":"2020_JournStatPhysics_Bossmann.pdf","date_created":"2020-11-20T09:26:46Z","success":1,"file_size":576726,"creator":"dernst","relation":"main_file","content_type":"application/pdf","checksum":"643e230bf147e64d9cdb3f6cc573679d","file_id":"8780","date_updated":"2020-11-20T09:26:46Z"}],"intvolume":"       178","date_published":"2020-02-21T00:00:00Z","ec_funded":1,"publication_identifier":{"issn":["0022-4715"],"eissn":["1572-9613"]},"year":"2020","acknowledgement":"Open access funding provided by Institute of Science and Technology (IST Austria).\r\nL.B. gratefully acknowledges the support by the German Research Foundation (DFG) within the Research Training Group 1838 “Spectral Theory and Dynamics of Quantum Systems”, and wishes to thank Stefan Teufel, Sören Petrat and Marcello Porta for helpful discussions. This project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 754411. N.P. gratefully acknowledges support from NSF grant DMS-1516228 and DMS-1840314. P.P.’s research was funded by DFG Grant no. PI 1114/3-1. Part of this work was done when N.P. and P.P. were visiting CCNU, Wuhan. N.P. and P.P. thank A.S. for his hospitality at CCNU.","article_type":"original","author":[{"full_name":"Bossmann, Lea","last_name":"Bossmann","id":"A2E3BCBE-5FCC-11E9-AA4B-76F3E5697425","orcid":"0000-0002-6854-1343","first_name":"Lea"},{"full_name":"Pavlović, Nataša","last_name":"Pavlović","first_name":"Nataša"},{"last_name":"Pickl","full_name":"Pickl, Peter","first_name":"Peter"},{"full_name":"Soffer, Avy","last_name":"Soffer","first_name":"Avy"}],"title":"Higher order corrections to the mean-field description of the dynamics of interacting bosons","date_updated":"2025-04-14T07:44:03Z","page":"1362-1396","status":"public","language":[{"iso":"eng"}],"file_date_updated":"2020-11-20T09:26:46Z","article_processing_charge":"Yes (via OA deal)","has_accepted_license":"1","oa_version":"Published Version","volume":178,"department":[{"_id":"RoSe"}],"corr_author":"1","publisher":"Springer Nature","type":"journal_article","abstract":[{"lang":"eng","text":"In this paper, we introduce a novel method for deriving higher order corrections to the mean-field description of the dynamics of interacting bosons. More precisely, we consider the dynamics of N d-dimensional bosons for large N. The bosons initially form a Bose–Einstein condensate and interact with each other via a pair potential of the form (N−1)−1Ndβv(Nβ·)forβ∈[0,14d). We derive a sequence of N-body functions which approximate the true many-body dynamics in L2(RdN)-norm to arbitrary precision in powers of N−1. The approximating functions are constructed as Duhamel expansions of finite order in terms of the first quantised analogue of a Bogoliubov time evolution."}],"citation":{"mla":"Bossmann, Lea, et al. “Higher Order Corrections to the Mean-Field Description of the Dynamics of Interacting Bosons.” <i>Journal of Statistical Physics</i>, vol. 178, Springer Nature, 2020, pp. 1362–96, doi:<a href=\"https://doi.org/10.1007/s10955-020-02500-8\">10.1007/s10955-020-02500-8</a>.","chicago":"Bossmann, Lea, Nataša Pavlović, Peter Pickl, and Avy Soffer. “Higher Order Corrections to the Mean-Field Description of the Dynamics of Interacting Bosons.” <i>Journal of Statistical Physics</i>. Springer Nature, 2020. <a href=\"https://doi.org/10.1007/s10955-020-02500-8\">https://doi.org/10.1007/s10955-020-02500-8</a>.","ista":"Bossmann L, Pavlović N, Pickl P, Soffer A. 2020. Higher order corrections to the mean-field description of the dynamics of interacting bosons. Journal of Statistical Physics. 178, 1362–1396.","ama":"Bossmann L, Pavlović N, Pickl P, Soffer A. Higher order corrections to the mean-field description of the dynamics of interacting bosons. <i>Journal of Statistical Physics</i>. 2020;178:1362-1396. doi:<a href=\"https://doi.org/10.1007/s10955-020-02500-8\">10.1007/s10955-020-02500-8</a>","ieee":"L. Bossmann, N. Pavlović, P. Pickl, and A. Soffer, “Higher order corrections to the mean-field description of the dynamics of interacting bosons,” <i>Journal of Statistical Physics</i>, vol. 178. Springer Nature, pp. 1362–1396, 2020.","apa":"Bossmann, L., Pavlović, N., Pickl, P., &#38; Soffer, A. (2020). Higher order corrections to the mean-field description of the dynamics of interacting bosons. <i>Journal of Statistical Physics</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s10955-020-02500-8\">https://doi.org/10.1007/s10955-020-02500-8</a>","short":"L. Bossmann, N. Pavlović, P. Pickl, A. Soffer, Journal of Statistical Physics 178 (2020) 1362–1396."},"quality_controlled":"1","_id":"7508","month":"02","scopus_import":"1","publication_status":"published","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"date_created":"2020-02-23T09:45:51Z","external_id":{"arxiv":["1905.06164"],"isi":["000516342200001"]}},{"citation":{"mla":"Zhang, Haonan. “From Wigner-Yanase-Dyson Conjecture to Carlen-Frank-Lieb Conjecture.” <i>Advances in Mathematics</i>, vol. 365, 107053, Elsevier, 2020, doi:<a href=\"https://doi.org/10.1016/j.aim.2020.107053\">10.1016/j.aim.2020.107053</a>.","chicago":"Zhang, Haonan. “From Wigner-Yanase-Dyson Conjecture to Carlen-Frank-Lieb Conjecture.” <i>Advances in Mathematics</i>. Elsevier, 2020. <a href=\"https://doi.org/10.1016/j.aim.2020.107053\">https://doi.org/10.1016/j.aim.2020.107053</a>.","ista":"Zhang H. 2020. From Wigner-Yanase-Dyson conjecture to Carlen-Frank-Lieb conjecture. Advances in Mathematics. 365, 107053.","apa":"Zhang, H. (2020). From Wigner-Yanase-Dyson conjecture to Carlen-Frank-Lieb conjecture. <i>Advances in Mathematics</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.aim.2020.107053\">https://doi.org/10.1016/j.aim.2020.107053</a>","ieee":"H. Zhang, “From Wigner-Yanase-Dyson conjecture to Carlen-Frank-Lieb conjecture,” <i>Advances in Mathematics</i>, vol. 365. Elsevier, 2020.","ama":"Zhang H. From Wigner-Yanase-Dyson conjecture to Carlen-Frank-Lieb conjecture. <i>Advances in Mathematics</i>. 2020;365. doi:<a href=\"https://doi.org/10.1016/j.aim.2020.107053\">10.1016/j.aim.2020.107053</a>","short":"H. Zhang, Advances in Mathematics 365 (2020)."},"abstract":[{"lang":"eng","text":"In this paper we study the joint convexity/concavity of the trace functions Ψp,q,s(A,B)=Tr(Bq2K∗ApKBq2)s,  p,q,s∈R,\r\nwhere A and B are positive definite matrices and K is any fixed invertible matrix. We will give full range of (p,q,s)∈R3 for Ψp,q,s to be jointly convex/concave for all K. As a consequence, we confirm a conjecture of Carlen, Frank and Lieb. In particular, we confirm a weaker conjecture of Audenaert and Datta and obtain the full range of (α,z) for α-z Rényi relative entropies to be monotone under completely positive trace preserving maps. We also give simpler proofs of many known results, including the concavity of Ψp,0,1/p for 0<p<1 which was first proved by Epstein using complex analysis. The key is to reduce the problem to the joint convexity/concavity of the trace functions Ψp,1−p,1(A,B)=TrK∗ApKB1−p,  −1≤p≤1, using a variational method. "}],"type":"journal_article","quality_controlled":"1","volume":365,"department":[{"_id":"JaMa"}],"publisher":"Elsevier","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1811.01205"}],"publication_status":"published","date_created":"2020-02-23T21:43:50Z","external_id":{"isi":["000522798000001"],"arxiv":["1811.01205"]},"_id":"7509","month":"05","oa":1,"day":"13","doi":"10.1016/j.aim.2020.107053","date_published":"2020-05-13T00:00:00Z","intvolume":"       365","article_number":"107053","acknowledgement":"The author would like to thank Quanhua Xu, Adam Skalski, Ke Li and Zhi Yin for their valuable comments. He also would like to thank the anonymous referees for pointing out some errors in an earlier version of this paper and for helpful comments and suggestions that make this paper better. The research was partially supported by the NCN (National Centre of Science) grant 2014/14/E/ST1/00525, the French project ISITE-BFC (contract ANR-15-IDEX-03), NSFC No. 11826012, and the European Union's Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No. 754411.","year":"2020","article_type":"original","ec_funded":1,"isi":1,"arxiv":1,"publication":"Advances in Mathematics","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","project":[{"grant_number":"754411","_id":"260C2330-B435-11E9-9278-68D0E5697425","name":"ISTplus - Postdoctoral Fellowships","call_identifier":"H2020"}],"ddc":["515"],"oa_version":"Preprint","title":"From Wigner-Yanase-Dyson conjecture to Carlen-Frank-Lieb conjecture","author":[{"last_name":"Zhang","full_name":"Zhang, Haonan","id":"D8F41E38-9E66-11E9-A9E2-65C2E5697425","first_name":"Haonan"}],"date_updated":"2025-04-14T07:44:03Z","status":"public","language":[{"iso":"eng"}],"article_processing_charge":"No"},{"oa_version":"Preprint","date_updated":"2025-07-10T11:54:43Z","author":[{"first_name":"László","full_name":"Erdös, László","last_name":"Erdös","id":"4DBD5372-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5366-9603"},{"full_name":"Krüger, Torben H","last_name":"Krüger","id":"3020C786-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4821-3297","first_name":"Torben H"},{"first_name":"Yuriy","orcid":"0000-0002-7327-856X","last_name":"Nemish","full_name":"Nemish, Yuriy","id":"4D902E6A-F248-11E8-B48F-1D18A9856A87"}],"title":"Local laws for polynomials of Wigner matrices","article_processing_charge":"No","status":"public","language":[{"iso":"eng"}],"date_published":"2020-07-01T00:00:00Z","intvolume":"       278","oa":1,"day":"01","doi":"10.1016/j.jfa.2020.108507","year":"2020","article_type":"original","acknowledgement":"The authors are grateful to Oskari Ajanki for his invaluable help at the initial stage of this project, to Serban Belinschi for useful discussions, to Alexander Tikhomirov for calling our attention to the model example in Section 6.2 and to the anonymous referee for suggesting to simplify certain proofs. Erdös: Partially funded by ERC Advanced Grant RANMAT No. 338804\r\n","publication_identifier":{"eissn":["1096-0783"],"issn":["0022-1236"]},"ec_funded":1,"article_number":"108507","isi":1,"publication":"Journal of Functional Analysis","arxiv":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","project":[{"_id":"258DCDE6-B435-11E9-9278-68D0E5697425","name":"Random matrices, universality and disordered quantum systems","grant_number":"338804","call_identifier":"FP7"}],"date_created":"2020-02-23T23:00:36Z","publication_status":"published","external_id":{"arxiv":["1804.11340"],"isi":["000522798900001"]},"_id":"7512","issue":"12","scopus_import":"1","month":"07","quality_controlled":"1","citation":{"short":"L. Erdös, T.H. Krüger, Y. Nemish, Journal of Functional Analysis 278 (2020).","ista":"Erdös L, Krüger TH, Nemish Y. 2020. Local laws for polynomials of Wigner matrices. Journal of Functional Analysis. 278(12), 108507.","chicago":"Erdös, László, Torben H Krüger, and Yuriy Nemish. “Local Laws for Polynomials of Wigner Matrices.” <i>Journal of Functional Analysis</i>. Elsevier, 2020. <a href=\"https://doi.org/10.1016/j.jfa.2020.108507\">https://doi.org/10.1016/j.jfa.2020.108507</a>.","mla":"Erdös, László, et al. “Local Laws for Polynomials of Wigner Matrices.” <i>Journal of Functional Analysis</i>, vol. 278, no. 12, 108507, Elsevier, 2020, doi:<a href=\"https://doi.org/10.1016/j.jfa.2020.108507\">10.1016/j.jfa.2020.108507</a>.","ieee":"L. Erdös, T. H. Krüger, and Y. Nemish, “Local laws for polynomials of Wigner matrices,” <i>Journal of Functional Analysis</i>, vol. 278, no. 12. Elsevier, 2020.","apa":"Erdös, L., Krüger, T. H., &#38; Nemish, Y. (2020). Local laws for polynomials of Wigner matrices. <i>Journal of Functional Analysis</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.jfa.2020.108507\">https://doi.org/10.1016/j.jfa.2020.108507</a>","ama":"Erdös L, Krüger TH, Nemish Y. Local laws for polynomials of Wigner matrices. <i>Journal of Functional Analysis</i>. 2020;278(12). doi:<a href=\"https://doi.org/10.1016/j.jfa.2020.108507\">10.1016/j.jfa.2020.108507</a>"},"abstract":[{"lang":"eng","text":"We consider general self-adjoint polynomials in several independent random matrices whose entries are centered and have the same variance. We show that under certain conditions the local law holds up to the optimal scale, i.e., the eigenvalue density on scales just above the eigenvalue spacing follows the global density of states which is determined by free probability theory. We prove that these conditions hold for general homogeneous polynomials of degree two and for symmetrized products of independent matrices with i.i.d. entries, thus establishing the optimal bulk local law for these classes of ensembles. In particular, we generalize a similar result of Anderson for anticommutator. For more general polynomials our conditions are effectively checkable numerically."}],"type":"journal_article","department":[{"_id":"LaEr"}],"volume":278,"main_file_link":[{"url":"https://arxiv.org/abs/1804.11340","open_access":"1"}],"publisher":"Elsevier"},{"_id":"7530","month":"02","issue":"1","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"publication_status":"published","date_created":"2020-02-26T13:51:14Z","volume":3,"OA_type":"gold","publisher":"Springer Nature","citation":{"short":"J.L. Senior, A. Gubaydullin, B. Karimi, J.T. Peltonen, J. Ankerhold, J.P. Pekola, Communications Physics 3 (2020).","mla":"Senior, Jorden L., et al. “Heat Rectification via a Superconducting Artificial Atom.” <i>Communications Physics</i>, vol. 3, no. 1, 40, Springer Nature, 2020, doi:<a href=\"https://doi.org/10.1038/s42005-020-0307-5\">10.1038/s42005-020-0307-5</a>.","chicago":"Senior, Jorden L, Azat Gubaydullin, Bayan Karimi, Joonas T. Peltonen, Joachim Ankerhold, and Jukka P. Pekola. “Heat Rectification via a Superconducting Artificial Atom.” <i>Communications Physics</i>. Springer Nature, 2020. <a href=\"https://doi.org/10.1038/s42005-020-0307-5\">https://doi.org/10.1038/s42005-020-0307-5</a>.","ista":"Senior JL, Gubaydullin A, Karimi B, Peltonen JT, Ankerhold J, Pekola JP. 2020. Heat rectification via a superconducting artificial atom. Communications Physics. 3(1), 40.","ieee":"J. L. Senior, A. Gubaydullin, B. Karimi, J. T. Peltonen, J. Ankerhold, and J. P. Pekola, “Heat rectification via a superconducting artificial atom,” <i>Communications Physics</i>, vol. 3, no. 1. Springer Nature, 2020.","apa":"Senior, J. L., Gubaydullin, A., Karimi, B., Peltonen, J. T., Ankerhold, J., &#38; Pekola, J. P. (2020). Heat rectification via a superconducting artificial atom. <i>Communications Physics</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s42005-020-0307-5\">https://doi.org/10.1038/s42005-020-0307-5</a>","ama":"Senior JL, Gubaydullin A, Karimi B, Peltonen JT, Ankerhold J, Pekola JP. Heat rectification via a superconducting artificial atom. <i>Communications Physics</i>. 2020;3(1). doi:<a href=\"https://doi.org/10.1038/s42005-020-0307-5\">10.1038/s42005-020-0307-5</a>"},"extern":"1","type":"journal_article","abstract":[{"lang":"eng","text":"In developing technologies based on superconducting quantum circuits, the need to control and route heating is a significant challenge in the experimental realisation and operation of these devices. One of the more ubiquitous devices in the current quantum computing toolbox is the transmon-type superconducting quantum bit, embedded in a resonator-based architecture. In the study of heat transport in superconducting circuits, a versatile and sensitive thermometer is based on studying the tunnelling characteristics of superconducting probes weakly coupled to a normal-metal island. Here we show that by integrating superconducting quantum bit coupled to two superconducting resonators at different frequencies, each resonator terminated (and thermally populated) by such a mesoscopic thin film metal island, one can experimentally observe magnetic flux-tunable photonic heat rectification between 0 and 10%."}],"quality_controlled":"1","author":[{"first_name":"Jorden L","full_name":"Senior, Jorden L","last_name":"Senior","id":"5479D234-2D30-11EA-89CC-40953DDC885E","orcid":"0000-0002-0672-9295"},{"last_name":"Gubaydullin","full_name":"Gubaydullin, Azat","first_name":"Azat"},{"first_name":"Bayan","full_name":"Karimi, Bayan","last_name":"Karimi"},{"first_name":"Joonas T.","last_name":"Peltonen","full_name":"Peltonen, Joonas T."},{"first_name":"Joachim","full_name":"Ankerhold, Joachim","last_name":"Ankerhold"},{"last_name":"Pekola","full_name":"Pekola, Jukka P.","first_name":"Jukka P."}],"title":"Heat rectification via a superconducting artificial atom","date_updated":"2024-10-15T12:36:24Z","status":"public","language":[{"iso":"eng"}],"has_accepted_license":"1","article_processing_charge":"No","file_date_updated":"2020-07-14T12:48:00Z","oa_version":"Published Version","DOAJ_listed":"1","publication":"Communications Physics","user_id":"0043cee0-e5fc-11ee-9736-f83bc23afbf0","ddc":["536"],"OA_place":"publisher","oa":1,"file":[{"access_level":"open_access","file_size":1590721,"creator":"dernst","file_name":"s42005-020-0307-5.pdf","date_created":"2020-03-03T10:41:13Z","relation":"main_file","checksum":"59255f51d9f113c40e3047e9ac83d367","content_type":"application/pdf","file_id":"7559","date_updated":"2020-07-14T12:48:00Z"},{"content_type":"application/pdf","checksum":"8325ae7b3c869d9aa6ed84823da4000a","relation":"main_file","date_updated":"2020-07-14T12:48:00Z","file_id":"7560","access_level":"open_access","creator":"dernst","file_size":1007249,"file_name":"42005_2020_307_MOESM1_ESM.pdf","date_created":"2020-03-03T10:41:13Z"}],"day":"25","doi":"10.1038/s42005-020-0307-5","date_published":"2020-02-25T00:00:00Z","intvolume":"         3","article_number":"40","publication_identifier":{"issn":["2399-3650"]},"year":"2020","article_type":"original"},{"quality_controlled":"1","citation":{"short":"N.B. Budanur, E. Marensi, A.P. Willis, B. Hof, Physical Review Fluids 5 (2020).","mla":"Budanur, Nazmi B., et al. “Upper Edge of Chaos and the Energetics of Transition in Pipe Flow.” <i>Physical Review Fluids</i>, vol. 5, no. 2, 023903, American Physical Society, 2020, doi:<a href=\"https://doi.org/10.1103/physrevfluids.5.023903\">10.1103/physrevfluids.5.023903</a>.","chicago":"Budanur, Nazmi B, Elena Marensi, Ashley P. Willis, and Björn Hof. “Upper Edge of Chaos and the Energetics of Transition in Pipe Flow.” <i>Physical Review Fluids</i>. American Physical Society, 2020. <a href=\"https://doi.org/10.1103/physrevfluids.5.023903\">https://doi.org/10.1103/physrevfluids.5.023903</a>.","ista":"Budanur NB, Marensi E, Willis AP, Hof B. 2020. Upper edge of chaos and the energetics of transition in pipe flow. Physical Review Fluids. 5(2), 023903.","ieee":"N. B. Budanur, E. Marensi, A. P. Willis, and B. Hof, “Upper edge of chaos and the energetics of transition in pipe flow,” <i>Physical Review Fluids</i>, vol. 5, no. 2. American Physical Society, 2020.","ama":"Budanur NB, Marensi E, Willis AP, Hof B. Upper edge of chaos and the energetics of transition in pipe flow. <i>Physical Review Fluids</i>. 2020;5(2). doi:<a href=\"https://doi.org/10.1103/physrevfluids.5.023903\">10.1103/physrevfluids.5.023903</a>","apa":"Budanur, N. B., Marensi, E., Willis, A. P., &#38; Hof, B. (2020). Upper edge of chaos and the energetics of transition in pipe flow. <i>Physical Review Fluids</i>. American Physical Society. <a href=\"https://doi.org/10.1103/physrevfluids.5.023903\">https://doi.org/10.1103/physrevfluids.5.023903</a>"},"type":"journal_article","abstract":[{"text":"In the past two decades, our understanding of the transition to turbulence in shear flows with linearly stable laminar solutions has greatly improved. Regarding the susceptibility of the laminar flow, two concepts have been particularly useful: the edge states and the minimal seeds. In this nonlinear picture of the transition, the basin boundary of turbulence is set by the edge state's stable manifold and this manifold comes closest in energy to the laminar equilibrium at the minimal seed. We begin this paper by presenting numerical experiments in which three-dimensional perturbations are too energetic to trigger turbulence in pipe flow but they do lead to turbulence when their amplitude is reduced. We show that this seemingly counterintuitive observation is in fact consistent with the fully nonlinear description of the transition mediated by the edge state. In order to understand the physical mechanisms behind this process, we measure the turbulent kinetic energy production and dissipation rates as a function of the radial coordinate. Our main observation is that the transition to turbulence relies on the energy amplification away from the wall, as opposed to the turbulence itself, whose energy is predominantly produced near the wall. This observation is further supported by the similar analyses on the minimal seeds and the edge states. Furthermore, we show that the time evolution of production-over-dissipation curves provides a clear distinction between the different initial amplification stages of the transition to turbulence from the minimal seed.","lang":"eng"}],"main_file_link":[{"url":"https://arxiv.org/abs/1912.09270","open_access":"1"}],"publisher":"American Physical Society","department":[{"_id":"BjHo"}],"volume":5,"external_id":{"arxiv":["1912.09270"],"isi":["000515065100001"]},"date_created":"2020-02-27T10:26:57Z","publication_status":"published","scopus_import":"1","issue":"2","month":"02","_id":"7534","year":"2020","publication_identifier":{"issn":["2469-990X"]},"article_type":"original","article_number":"023903","date_published":"2020-02-21T00:00:00Z","intvolume":"         5","oa":1,"doi":"10.1103/physrevfluids.5.023903","day":"21","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","isi":1,"publication":"Physical Review Fluids","arxiv":1,"oa_version":"Preprint","article_processing_charge":"No","language":[{"iso":"eng"}],"status":"public","date_updated":"2023-08-18T06:44:46Z","title":"Upper edge of chaos and the energetics of transition in pipe flow","author":[{"orcid":"0000-0003-0423-5010","id":"3EA1010E-F248-11E8-B48F-1D18A9856A87","last_name":"Budanur","full_name":"Budanur, Nazmi B","first_name":"Nazmi B"},{"last_name":"Marensi","full_name":"Marensi, Elena","first_name":"Elena"},{"full_name":"Willis, Ashley P.","last_name":"Willis","first_name":"Ashley P."},{"first_name":"Björn","orcid":"0000-0003-2057-2754","full_name":"Hof, Björn","last_name":"Hof","id":"3A374330-F248-11E8-B48F-1D18A9856A87"}]},{"intvolume":"        67","date_published":"2020-02-01T00:00:00Z","doi":"10.1163/22238980-20191110","day":"01","publication_identifier":{"eissn":["2223-8980"],"issn":["0792-9978"]},"article_type":"original","year":"2020","publication":"Israel Journal of Plant Sciences","isi":1,"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","oa_version":"None","date_updated":"2023-08-18T06:45:15Z","page":"16-26","author":[{"first_name":"Inge","id":"362BF7FE-F248-11E8-B48F-1D18A9856A87","last_name":"Verstraeten","full_name":"Verstraeten, Inge","orcid":"0000-0001-7241-2328"},{"last_name":"Buyle","full_name":"Buyle, H.","first_name":"H."},{"last_name":"Werbrouck","full_name":"Werbrouck, S.","first_name":"S."},{"full_name":"Van Labeke, M.C.","last_name":"Van Labeke","first_name":"M.C."},{"last_name":"Geelen","full_name":"Geelen, D.","first_name":"D."}],"title":"In vitro shoot growth and adventitious rooting of Wikstroemia gemmata depends on light quality","article_processing_charge":"No","status":"public","language":[{"iso":"eng"}],"quality_controlled":"1","abstract":[{"text":" In vitro propagation of the ornamentally interesting species Wikstroemia gemmata is limited by the recalcitrance to form adventitious roots. In this article, two strategies to improve the rooting capacity of in vitro microcuttings are presented. Firstly, the effect of exogenous auxin was evaluated in both light and dark cultivated stem segments and also the sucrose-content of the medium was varied in order to determine better rooting conditions. Secondly, different spectral lights were evaluated and the effect on shoot growth and root induction demonstrated that the exact spectral composition of light is important for successful in vitro growth and development of Wikstroemia gemmata. We show that exogenous auxin cannot compensate for the poor rooting under unfavorable light conditions. Adapting the culture conditions is therefore paramount for successful industrial propagation of Wikstroemia gemmata. ","lang":"eng"}],"type":"journal_article","citation":{"short":"I. Verstraeten, H. Buyle, S. Werbrouck, M.C. Van Labeke, D. Geelen, Israel Journal of Plant Sciences 67 (2020) 16–26.","ama":"Verstraeten I, Buyle H, Werbrouck S, Van Labeke MC, Geelen D. In vitro shoot growth and adventitious rooting of Wikstroemia gemmata depends on light quality. <i>Israel Journal of Plant Sciences</i>. 2020;67(1-2):16-26. doi:<a href=\"https://doi.org/10.1163/22238980-20191110\">10.1163/22238980-20191110</a>","apa":"Verstraeten, I., Buyle, H., Werbrouck, S., Van Labeke, M. C., &#38; Geelen, D. (2020). In vitro shoot growth and adventitious rooting of Wikstroemia gemmata depends on light quality. <i>Israel Journal of Plant Sciences</i>. Brill. <a href=\"https://doi.org/10.1163/22238980-20191110\">https://doi.org/10.1163/22238980-20191110</a>","ieee":"I. Verstraeten, H. Buyle, S. Werbrouck, M. C. Van Labeke, and D. Geelen, “In vitro shoot growth and adventitious rooting of Wikstroemia gemmata depends on light quality,” <i>Israel Journal of Plant Sciences</i>, vol. 67, no. 1–2. Brill, pp. 16–26, 2020.","chicago":"Verstraeten, Inge, H. Buyle, S. Werbrouck, M.C. Van Labeke, and D. Geelen. “In Vitro Shoot Growth and Adventitious Rooting of Wikstroemia Gemmata Depends on Light Quality.” <i>Israel Journal of Plant Sciences</i>. Brill, 2020. <a href=\"https://doi.org/10.1163/22238980-20191110\">https://doi.org/10.1163/22238980-20191110</a>.","ista":"Verstraeten I, Buyle H, Werbrouck S, Van Labeke MC, Geelen D. 2020. In vitro shoot growth and adventitious rooting of Wikstroemia gemmata depends on light quality. Israel Journal of Plant Sciences. 67(1–2), 16–26.","mla":"Verstraeten, Inge, et al. “In Vitro Shoot Growth and Adventitious Rooting of Wikstroemia Gemmata Depends on Light Quality.” <i>Israel Journal of Plant Sciences</i>, vol. 67, no. 1–2, Brill, 2020, pp. 16–26, doi:<a href=\"https://doi.org/10.1163/22238980-20191110\">10.1163/22238980-20191110</a>."},"department":[{"_id":"JiFr"}],"volume":67,"publisher":"Brill","date_created":"2020-02-28T09:18:01Z","publication_status":"published","external_id":{"isi":["000525343300004"]},"_id":"7540","scopus_import":"1","issue":"1-2","month":"02"},{"issue":"1","month":"05","_id":"7545","date_created":"2020-02-28T10:38:32Z","publication_status":"published","main_file_link":[{"url":"https://doi.org/10.1101/685339","open_access":"1"}],"publisher":"Elsevier","volume":461,"quality_controlled":"1","type":"journal_article","extern":"1","abstract":[{"lang":"eng","text":"Neuronal activity often leads to alterations in gene expression and cellular architecture. The nematode Caenorhabditis elegans, owing to its compact translucent nervous system, is a powerful system in which to study conserved aspects of the development and plasticity of neuronal morphology. Here we focus on one pair of sensory neurons, termed URX, which the worm uses to sense and avoid high levels of environmental oxygen. Previous studies have reported that the URX neuron pair has variable branched endings at its dendritic sensory tip. By controlling oxygen levels and analyzing mutants, we found that these microtubule-rich branched endings grow over time as a consequence of neuronal activity in adulthood. We also find that the growth of these branches correlates with an increase in cellular sensitivity to particular ranges of oxygen that is observable in the behavior of older worms. Given the strengths of C. elegans as a model organism, URX may serve as a potent system for uncovering genes and mechanisms involved in activity-dependent morphological changes in neurons and possible adaptive changes in the aging nervous system."}],"citation":{"short":"J.A. Cohn, E.R. Cebul, G. Valperga, L. Brose, M. de Bono, M.G. Heiman, J.T. Pierce, Developmental Biology 461 (2020) 66–74.","ieee":"J. A. Cohn <i>et al.</i>, “Long-term activity drives dendritic branch elaboration of a C. elegans sensory neuron,” <i>Developmental Biology</i>, vol. 461, no. 1. Elsevier, pp. 66–74, 2020.","ama":"Cohn JA, Cebul ER, Valperga G, et al. Long-term activity drives dendritic branch elaboration of a C. elegans sensory neuron. <i>Developmental Biology</i>. 2020;461(1):66-74. doi:<a href=\"https://doi.org/10.1016/j.ydbio.2020.01.005\">10.1016/j.ydbio.2020.01.005</a>","apa":"Cohn, J. A., Cebul, E. R., Valperga, G., Brose, L., de Bono, M., Heiman, M. G., &#38; Pierce, J. T. (2020). Long-term activity drives dendritic branch elaboration of a C. elegans sensory neuron. <i>Developmental Biology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.ydbio.2020.01.005\">https://doi.org/10.1016/j.ydbio.2020.01.005</a>","mla":"Cohn, Jesse A., et al. “Long-Term Activity Drives Dendritic Branch Elaboration of a C. Elegans Sensory Neuron.” <i>Developmental Biology</i>, vol. 461, no. 1, Elsevier, 2020, pp. 66–74, doi:<a href=\"https://doi.org/10.1016/j.ydbio.2020.01.005\">10.1016/j.ydbio.2020.01.005</a>.","ista":"Cohn JA, Cebul ER, Valperga G, Brose L, de Bono M, Heiman MG, Pierce JT. 2020. Long-term activity drives dendritic branch elaboration of a C. elegans sensory neuron. Developmental Biology. 461(1), 66–74.","chicago":"Cohn, Jesse A., Elizabeth R. Cebul, Giulio Valperga, Lotti Brose, Mario de Bono, Maxwell G. Heiman, and Jonathan T. Pierce. “Long-Term Activity Drives Dendritic Branch Elaboration of a C. Elegans Sensory Neuron.” <i>Developmental Biology</i>. Elsevier, 2020. <a href=\"https://doi.org/10.1016/j.ydbio.2020.01.005\">https://doi.org/10.1016/j.ydbio.2020.01.005</a>."},"article_processing_charge":"No","status":"public","language":[{"iso":"eng"}],"page":"66-74","date_updated":"2021-01-12T08:14:06Z","title":"Long-term activity drives dendritic branch elaboration of a C. elegans sensory neuron","author":[{"last_name":"Cohn","full_name":"Cohn, Jesse A.","first_name":"Jesse A."},{"full_name":"Cebul, Elizabeth R.","last_name":"Cebul","first_name":"Elizabeth R."},{"first_name":"Giulio","last_name":"Valperga","full_name":"Valperga, Giulio"},{"full_name":"Brose, Lotti","last_name":"Brose","first_name":"Lotti"},{"orcid":"0000-0001-8347-0443","id":"4E3FF80E-F248-11E8-B48F-1D18A9856A87","full_name":"de Bono, Mario","last_name":"de Bono","first_name":"Mario"},{"first_name":"Maxwell G.","last_name":"Heiman","full_name":"Heiman, Maxwell G."},{"first_name":"Jonathan T.","last_name":"Pierce","full_name":"Pierce, Jonathan T."}],"oa_version":"Preprint","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication":"Developmental Biology","article_type":"original","year":"2020","publication_identifier":{"issn":["0012-1606"]},"intvolume":"       461","date_published":"2020-05-01T00:00:00Z","doi":"10.1016/j.ydbio.2020.01.005","day":"01","oa":1},{"quality_controlled":"1","citation":{"apa":"Beets, I., Zhang, G., Fenk, L. A., Chen, C., Nelson, G. M., Félix, M.-A., &#38; de Bono, M. (2020). Natural variation in a dendritic scaffold protein remodels experience-dependent plasticity by altering neuropeptide expression. <i>Neuron</i>. Cell Press. <a href=\"https://doi.org/10.1016/j.neuron.2019.10.001\">https://doi.org/10.1016/j.neuron.2019.10.001</a>","ieee":"I. Beets <i>et al.</i>, “Natural variation in a dendritic scaffold protein remodels experience-dependent plasticity by altering neuropeptide expression,” <i>Neuron</i>, vol. 105, no. 1. Cell Press, p. 106–121.e10, 2020.","ama":"Beets I, Zhang G, Fenk LA, et al. Natural variation in a dendritic scaffold protein remodels experience-dependent plasticity by altering neuropeptide expression. <i>Neuron</i>. 2020;105(1):106-121.e10. doi:<a href=\"https://doi.org/10.1016/j.neuron.2019.10.001\">10.1016/j.neuron.2019.10.001</a>","mla":"Beets, Isabel, et al. “Natural Variation in a Dendritic Scaffold Protein Remodels Experience-Dependent Plasticity by Altering Neuropeptide Expression.” <i>Neuron</i>, vol. 105, no. 1, Cell Press, 2020, p. 106–121.e10, doi:<a href=\"https://doi.org/10.1016/j.neuron.2019.10.001\">10.1016/j.neuron.2019.10.001</a>.","ista":"Beets I, Zhang G, Fenk LA, Chen C, Nelson GM, Félix M-A, de Bono M. 2020. Natural variation in a dendritic scaffold protein remodels experience-dependent plasticity by altering neuropeptide expression. Neuron. 105(1), 106–121.e10.","chicago":"Beets, Isabel, Gaotian Zhang, Lorenz A. Fenk, Changchun Chen, Geoffrey M. Nelson, Marie-Anne Félix, and Mario de Bono. “Natural Variation in a Dendritic Scaffold Protein Remodels Experience-Dependent Plasticity by Altering Neuropeptide Expression.” <i>Neuron</i>. Cell Press, 2020. <a href=\"https://doi.org/10.1016/j.neuron.2019.10.001\">https://doi.org/10.1016/j.neuron.2019.10.001</a>.","short":"I. Beets, G. Zhang, L.A. Fenk, C. Chen, G.M. Nelson, M.-A. Félix, M. de Bono, Neuron 105 (2020) 106–121.e10."},"type":"journal_article","abstract":[{"lang":"eng","text":"The extent to which behavior is shaped by experience varies between individuals. Genetic differences contribute to this variation, but the neural mechanisms are not understood. Here, we dissect natural variation in the behavioral flexibility of two Caenorhabditis elegans wild strains. In one strain, a memory of exposure to 21% O2 suppresses CO2-evoked locomotory arousal; in the other, CO2 evokes arousal regardless of previous O2 experience. We map that variation to a polymorphic dendritic scaffold protein, ARCP-1, expressed in sensory neurons. ARCP-1 binds the Ca2+-dependent phosphodiesterase PDE-1 and co-localizes PDE-1 with molecular sensors for CO2 at dendritic ends. Reducing ARCP-1 or PDE-1 activity promotes CO2 escape by altering neuropeptide expression in the BAG CO2 sensors. Variation in ARCP-1 alters behavioral plasticity in multiple paradigms. Our findings are reminiscent of genetic accommodation, an evolutionary process by which phenotypic flexibility in response to environmental variation is reset by genetic change."}],"pmid":1,"department":[{"_id":"MaDe"}],"volume":105,"corr_author":"1","publisher":"Cell Press","date_created":"2020-02-28T10:43:39Z","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"publication_status":"published","external_id":{"isi":["000507341300012"],"pmid":["31757604"]},"_id":"7546","issue":"1","month":"01","date_published":"2020-01-08T00:00:00Z","intvolume":"       105","file":[{"access_level":"open_access","file_size":3294066,"creator":"dernst","file_name":"2020_Neuron_Beets.pdf","date_created":"2020-03-02T15:43:57Z","relation":"main_file","checksum":"799bfd297a008753a688b30d3958fa48","content_type":"application/pdf","file_id":"7558","date_updated":"2020-07-14T12:48:00Z"}],"oa":1,"doi":"10.1016/j.neuron.2019.10.001","day":"08","publication_identifier":{"issn":["0896-6273"]},"year":"2020","article_type":"original","isi":1,"publication":"Neuron","ddc":["570"],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","oa_version":"Published Version","date_updated":"2024-10-09T20:59:20Z","page":"106-121.e10","title":"Natural variation in a dendritic scaffold protein remodels experience-dependent plasticity by altering neuropeptide expression","author":[{"last_name":"Beets","full_name":"Beets, Isabel","first_name":"Isabel"},{"first_name":"Gaotian","last_name":"Zhang","full_name":"Zhang, Gaotian"},{"first_name":"Lorenz A.","full_name":"Fenk, Lorenz A.","last_name":"Fenk"},{"last_name":"Chen","full_name":"Chen, Changchun","first_name":"Changchun"},{"first_name":"Geoffrey M.","last_name":"Nelson","full_name":"Nelson, Geoffrey M."},{"first_name":"Marie-Anne","full_name":"Félix, Marie-Anne","last_name":"Félix"},{"orcid":"0000-0001-8347-0443","id":"4E3FF80E-F248-11E8-B48F-1D18A9856A87","last_name":"de Bono","full_name":"de Bono, Mario","first_name":"Mario"}],"has_accepted_license":"1","article_processing_charge":"No","file_date_updated":"2020-07-14T12:48:00Z","language":[{"iso":"eng"}],"status":"public"},{"oa_version":"Preprint","date_updated":"2025-07-10T11:54:44Z","page":"595-614","title":"Weighted Poisson–Delaunay mosaics","author":[{"first_name":"Herbert","orcid":"0000-0002-9823-6833","last_name":"Edelsbrunner","full_name":"Edelsbrunner, Herbert","id":"3FB178DA-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Nikitenko, Anton","last_name":"Nikitenko","id":"3E4FF1BA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-0659-3201","first_name":"Anton"}],"article_processing_charge":"No","language":[{"iso":"eng"}],"status":"public","intvolume":"        64","date_published":"2020-02-13T00:00:00Z","doi":"10.1137/S0040585X97T989726","day":"13","oa":1,"ec_funded":1,"year":"2020","publication_identifier":{"eissn":["1095-7219"],"issn":["0040-585X"]},"article_type":"original","publication":"Theory of Probability and its Applications","arxiv":1,"isi":1,"project":[{"call_identifier":"H2020","name":"Alpha Shape Theory Extended","_id":"266A2E9E-B435-11E9-9278-68D0E5697425","grant_number":"788183"},{"name":"Persistence and stability of geometric complexes","_id":"2561EBF4-B435-11E9-9278-68D0E5697425","grant_number":"I02979-N35","call_identifier":"FWF"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_created":"2020-03-01T23:00:39Z","publication_status":"published","external_id":{"isi":["000551393100007"],"arxiv":["1705.08735"]},"_id":"7554","issue":"4","scopus_import":"1","month":"02","quality_controlled":"1","type":"journal_article","abstract":[{"text":"Slicing a Voronoi tessellation in ${R}^n$ with a $k$-plane gives a $k$-dimensional weighted Voronoi tessellation, also known as a power diagram or Laguerre tessellation. Mapping every simplex of the dual weighted Delaunay mosaic to the radius of the smallest empty circumscribed sphere whose center lies in the $k$-plane gives a generalized discrete Morse function. Assuming the Voronoi tessellation is generated by a Poisson point process in ${R}^n$, we study the expected number of simplices in the $k$-dimensional weighted Delaunay mosaic as well as the expected number of intervals of the Morse function, both as functions of a radius threshold. As a by-product, we obtain a new proof for the expected number of connected components (clumps) in a line section of a circular Boolean model in ${R}^n$.","lang":"eng"}],"citation":{"apa":"Edelsbrunner, H., &#38; Nikitenko, A. (2020). Weighted Poisson–Delaunay mosaics. <i>Theory of Probability and Its Applications</i>. SIAM. <a href=\"https://doi.org/10.1137/S0040585X97T989726\">https://doi.org/10.1137/S0040585X97T989726</a>","ieee":"H. Edelsbrunner and A. Nikitenko, “Weighted Poisson–Delaunay mosaics,” <i>Theory of Probability and its Applications</i>, vol. 64, no. 4. SIAM, pp. 595–614, 2020.","ama":"Edelsbrunner H, Nikitenko A. Weighted Poisson–Delaunay mosaics. <i>Theory of Probability and its Applications</i>. 2020;64(4):595-614. doi:<a href=\"https://doi.org/10.1137/S0040585X97T989726\">10.1137/S0040585X97T989726</a>","ista":"Edelsbrunner H, Nikitenko A. 2020. Weighted Poisson–Delaunay mosaics. Theory of Probability and its Applications. 64(4), 595–614.","chicago":"Edelsbrunner, Herbert, and Anton Nikitenko. “Weighted Poisson–Delaunay Mosaics.” <i>Theory of Probability and Its Applications</i>. SIAM, 2020. <a href=\"https://doi.org/10.1137/S0040585X97T989726\">https://doi.org/10.1137/S0040585X97T989726</a>.","mla":"Edelsbrunner, Herbert, and Anton Nikitenko. “Weighted Poisson–Delaunay Mosaics.” <i>Theory of Probability and Its Applications</i>, vol. 64, no. 4, SIAM, 2020, pp. 595–614, doi:<a href=\"https://doi.org/10.1137/S0040585X97T989726\">10.1137/S0040585X97T989726</a>.","short":"H. Edelsbrunner, A. Nikitenko, Theory of Probability and Its Applications 64 (2020) 595–614."},"department":[{"_id":"HeEd"}],"volume":64,"main_file_link":[{"url":"https://arxiv.org/abs/1705.08735","open_access":"1"}],"publisher":"SIAM"},{"_id":"7567","month":"03","scopus_import":"1","publication_status":"published","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"date_created":"2020-03-05T13:30:18Z","volume":14,"department":[{"_id":"HeEd"}],"corr_author":"1","publisher":"Springer Nature","type":"journal_article","abstract":[{"lang":"eng","text":"Coxeter triangulations are triangulations of Euclidean space based on a single simplex. By this we mean that given an individual simplex we can recover the entire triangulation of Euclidean space by inductively reflecting in the faces of the simplex. In this paper we establish that the quality of the simplices in all Coxeter triangulations is O(1/d−−√) of the quality of regular simplex. We further investigate the Delaunay property for these triangulations. Moreover, we consider an extension of the Delaunay property, namely protection, which is a measure of non-degeneracy of a Delaunay triangulation. In particular, one family of Coxeter triangulations achieves the protection O(1/d2). We conjecture that both bounds are optimal for triangulations in Euclidean space."}],"citation":{"short":"A. Choudhary, S. Kachanovich, M. Wintraecken, Mathematics in Computer Science 14 (2020) 141–176.","mla":"Choudhary, Aruni, et al. “Coxeter Triangulations Have Good Quality.” <i>Mathematics in Computer Science</i>, vol. 14, Springer Nature, 2020, pp. 141–76, doi:<a href=\"https://doi.org/10.1007/s11786-020-00461-5\">10.1007/s11786-020-00461-5</a>.","chicago":"Choudhary, Aruni, Siargey Kachanovich, and Mathijs Wintraecken. “Coxeter Triangulations Have Good Quality.” <i>Mathematics in Computer Science</i>. Springer Nature, 2020. <a href=\"https://doi.org/10.1007/s11786-020-00461-5\">https://doi.org/10.1007/s11786-020-00461-5</a>.","ista":"Choudhary A, Kachanovich S, Wintraecken M. 2020. Coxeter triangulations have good quality. Mathematics in Computer Science. 14, 141–176.","ama":"Choudhary A, Kachanovich S, Wintraecken M. Coxeter triangulations have good quality. <i>Mathematics in Computer Science</i>. 2020;14:141-176. doi:<a href=\"https://doi.org/10.1007/s11786-020-00461-5\">10.1007/s11786-020-00461-5</a>","ieee":"A. Choudhary, S. Kachanovich, and M. Wintraecken, “Coxeter triangulations have good quality,” <i>Mathematics in Computer Science</i>, vol. 14. Springer Nature, pp. 141–176, 2020.","apa":"Choudhary, A., Kachanovich, S., &#38; Wintraecken, M. (2020). Coxeter triangulations have good quality. <i>Mathematics in Computer Science</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s11786-020-00461-5\">https://doi.org/10.1007/s11786-020-00461-5</a>"},"quality_controlled":"1","author":[{"last_name":"Choudhary","full_name":"Choudhary, Aruni","first_name":"Aruni"},{"first_name":"Siargey","full_name":"Kachanovich, Siargey","last_name":"Kachanovich"},{"orcid":"0000-0002-7472-2220","id":"307CFBC8-F248-11E8-B48F-1D18A9856A87","full_name":"Wintraecken, Mathijs","last_name":"Wintraecken","first_name":"Mathijs"}],"title":"Coxeter triangulations have good quality","date_updated":"2025-04-14T07:44:03Z","page":"141-176","language":[{"iso":"eng"}],"status":"public","file_date_updated":"2020-11-20T10:18:02Z","has_accepted_license":"1","article_processing_charge":"Yes (via OA deal)","oa_version":"Published Version","publication":"Mathematics in Computer Science","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","project":[{"_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854","name":"IST Austria Open Access Fund"},{"grant_number":"754411","name":"ISTplus - Postdoctoral Fellowships","_id":"260C2330-B435-11E9-9278-68D0E5697425","call_identifier":"H2020"}],"ddc":["510"],"day":"01","doi":"10.1007/s11786-020-00461-5","file":[{"success":1,"date_created":"2020-11-20T10:18:02Z","file_name":"2020_MathCompScie_Choudhary.pdf","file_size":872275,"creator":"dernst","access_level":"open_access","file_id":"8783","date_updated":"2020-11-20T10:18:02Z","relation":"main_file","checksum":"1d145f3ab50ccee735983cb89236e609","content_type":"application/pdf"}],"oa":1,"intvolume":"        14","date_published":"2020-03-01T00:00:00Z","ec_funded":1,"article_type":"original","publication_identifier":{"issn":["1661-8270"],"eissn":["1661-8289"]},"year":"2020"},{"type":"journal_article","abstract":[{"text":"The relaxation of few-body quantum systems can strongly depend on the initial state when the system’s semiclassical phase space is mixed; i.e., regions of chaotic motion coexist with regular islands. In recent years, there has been much effort to understand the process of thermalization in strongly interacting quantum systems that often lack an obvious semiclassical limit. The time-dependent variational principle (TDVP) allows one to systematically derive an effective classical (nonlinear) dynamical system by projecting unitary many-body dynamics onto a manifold of weakly entangled variational states. We demonstrate that such dynamical systems generally possess mixed phase space. When TDVP errors are small, the mixed phase space leaves a footprint on the exact dynamics of the quantum model. For example, when the system is initialized in a state belonging to a stable periodic orbit or the surrounding regular region, it exhibits persistent many-body quantum revivals. As a proof of principle, we identify new types of “quantum many-body scars,” i.e., initial states that lead to long-time oscillations in a model of interacting Rydberg atoms in one and two dimensions. Intriguingly, the initial states that give rise to most robust revivals are typically entangled states. On the other hand, even when TDVP errors are large, as in the thermalizing tilted-field Ising model, initializing the system in a regular region of phase space leads to a surprising slowdown of thermalization. Our work establishes TDVP as a method for identifying interacting quantum systems with anomalous dynamics in arbitrary dimensions. Moreover, the mixed phase space classical variational equations allow one to find slowly thermalizing initial conditions in interacting models. Our results shed light on a link between classical and quantum chaos, pointing toward possible extensions of the classical Kolmogorov-Arnold-Moser theorem to quantum systems.","lang":"eng"}],"citation":{"mla":"Michailidis, Alexios, et al. “Slow Quantum Thermalization and Many-Body Revivals from Mixed Phase Space.” <i>Physical Review X</i>, vol. 10, no. 1, 011055, American Physical Society, 2020, doi:<a href=\"https://doi.org/10.1103/physrevx.10.011055\">10.1103/physrevx.10.011055</a>.","ista":"Michailidis A, Turner CJ, Papić Z, Abanin DA, Serbyn M. 2020. Slow quantum thermalization and many-body revivals from mixed phase space. Physical Review X. 10(1), 011055.","chicago":"Michailidis, Alexios, C. J. Turner, Z. Papić, D. A. Abanin, and Maksym Serbyn. “Slow Quantum Thermalization and Many-Body Revivals from Mixed Phase Space.” <i>Physical Review X</i>. American Physical Society, 2020. <a href=\"https://doi.org/10.1103/physrevx.10.011055\">https://doi.org/10.1103/physrevx.10.011055</a>.","ieee":"A. Michailidis, C. J. Turner, Z. Papić, D. A. Abanin, and M. Serbyn, “Slow quantum thermalization and many-body revivals from mixed phase space,” <i>Physical Review X</i>, vol. 10, no. 1. American Physical Society, 2020.","apa":"Michailidis, A., Turner, C. J., Papić, Z., Abanin, D. A., &#38; Serbyn, M. (2020). Slow quantum thermalization and many-body revivals from mixed phase space. <i>Physical Review X</i>. American Physical Society. <a href=\"https://doi.org/10.1103/physrevx.10.011055\">https://doi.org/10.1103/physrevx.10.011055</a>","ama":"Michailidis A, Turner CJ, Papić Z, Abanin DA, Serbyn M. Slow quantum thermalization and many-body revivals from mixed phase space. <i>Physical Review X</i>. 2020;10(1). doi:<a href=\"https://doi.org/10.1103/physrevx.10.011055\">10.1103/physrevx.10.011055</a>","short":"A. Michailidis, C.J. Turner, Z. Papić, D.A. Abanin, M. Serbyn, Physical Review X 10 (2020)."},"quality_controlled":"1","publisher":"American Physical Society","volume":10,"department":[{"_id":"MaSe"}],"external_id":{"isi":["000517969300001"],"arxiv":["1905.08564"]},"publication_status":"published","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"date_created":"2020-03-08T18:02:01Z","month":"03","scopus_import":"1","issue":"1","_id":"7570","article_number":"011055","publication_identifier":{"issn":["2160-3308"]},"article_type":"original","year":"2020","doi":"10.1103/physrevx.10.011055","day":"04","oa":1,"file":[{"access_level":"open_access","file_name":"2020_PhysicalReviewX_Michailidis.pdf","date_created":"2020-03-12T12:13:07Z","file_size":17828638,"creator":"dernst","relation":"main_file","checksum":"4b3f2c13873d35230173c73d0e11c408","content_type":"application/pdf","file_id":"7581","date_updated":"2020-07-14T12:48:00Z"}],"intvolume":"        10","date_published":"2020-03-04T00:00:00Z","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","ddc":["530"],"arxiv":1,"publication":"Physical Review X","isi":1,"oa_version":"Published Version","language":[{"iso":"eng"}],"status":"public","file_date_updated":"2020-07-14T12:48:00Z","has_accepted_license":"1","article_processing_charge":"No","title":"Slow quantum thermalization and many-body revivals from mixed phase space","author":[{"id":"36EBAD38-F248-11E8-B48F-1D18A9856A87","last_name":"Michailidis","full_name":"Michailidis, Alexios","orcid":"0000-0002-8443-1064","first_name":"Alexios"},{"last_name":"Turner","full_name":"Turner, C. J.","first_name":"C. J."},{"full_name":"Papić, Z.","last_name":"Papić","first_name":"Z."},{"full_name":"Abanin, D. A.","last_name":"Abanin","first_name":"D. A."},{"first_name":"Maksym","full_name":"Serbyn, Maksym","last_name":"Serbyn","id":"47809E7E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2399-5827"}],"related_material":{"link":[{"description":"News on IST Homepage","url":"https://ist.ac.at/en/news/classical-physics-helps-predict-fate-of-interacting-quantum-systems/","relation":"press_release"}]},"date_updated":"2023-08-18T07:01:07Z"},{"publication_status":"published","date_created":"2020-03-19T15:54:34Z","oa_version":"None","language":[{"iso":"eng"}],"status":"public","month":"03","article_processing_charge":"No","title":"Lithium–Oxygen batteries","author":[{"first_name":"Yann K.","last_name":"Petit","full_name":"Petit, Yann K."},{"first_name":"Eléonore","full_name":"Mourad, Eléonore","last_name":"Mourad"},{"first_name":"Stefan Alexander","orcid":"0000-0003-2902-5319","id":"A8CA28E6-CE23-11E9-AD2D-EC27E6697425","full_name":"Freunberger, Stefan Alexander","last_name":"Freunberger"}],"page":"1-42","_id":"7591","date_updated":"2021-01-12T08:14:22Z","publication_identifier":{"eisbn":["9783527610426"],"isbn":["9783527302505"]},"year":"2020","type":"book_chapter","abstract":[{"lang":"eng","text":"Rechargeable Li–O2 batteries have gathered enormous attention in the research community for having amongst the highest theoretical energy storage. Realizing the promise, even in part, in practice could produce a device that stores significantly more energy than other rechargeable batteries. Fundamental understanding of the reaction mechanisms is now realized to be key to overcome many challenges. We give a critical overview of the current understanding of the chemistry underpinning the Li–O2 cell with focus on the cathode and give a perspective on the most important research needs. Since performance and reversibility are often grossly misunderstood, we put emphasis on realistic performances to be achieved by Li–O2 cells and on means to identify reversibility. Parasitic chemistry is the foremost barrier for reversible cycling and now realized to be predominantly caused by singlet oxygen rather than by the previously thought superoxide or peroxide. This finding profoundly affects any other area of research from reaction mechanisms, to electrolytes and catalysts and dominates future research needs."}],"doi":"10.1002/9783527610426.bard110017","day":"18","extern":"1","citation":{"short":"Y.K. Petit, E. Mourad, S.A. Freunberger, in:, Encyclopedia of Electrochemistry, Wiley, 2020, pp. 1–42.","mla":"Petit, Yann K., et al. “Lithium–Oxygen Batteries.” <i>Encyclopedia of Electrochemistry</i>, Wiley, 2020, pp. 1–42, doi:<a href=\"https://doi.org/10.1002/9783527610426.bard110017\">10.1002/9783527610426.bard110017</a>.","chicago":"Petit, Yann K., Eléonore Mourad, and Stefan Alexander Freunberger. “Lithium–Oxygen Batteries.” In <i>Encyclopedia of Electrochemistry</i>, 1–42. Wiley, 2020. <a href=\"https://doi.org/10.1002/9783527610426.bard110017\">https://doi.org/10.1002/9783527610426.bard110017</a>.","ista":"Petit YK, Mourad E, Freunberger SA. 2020.Lithium–Oxygen batteries. In: Encyclopedia of Electrochemistry. , 1–42.","apa":"Petit, Y. K., Mourad, E., &#38; Freunberger, S. A. (2020). Lithium–Oxygen batteries. In <i>Encyclopedia of Electrochemistry</i> (pp. 1–42). Wiley. <a href=\"https://doi.org/10.1002/9783527610426.bard110017\">https://doi.org/10.1002/9783527610426.bard110017</a>","ama":"Petit YK, Mourad E, Freunberger SA. Lithium–Oxygen batteries. In: <i>Encyclopedia of Electrochemistry</i>. Wiley; 2020:1-42. doi:<a href=\"https://doi.org/10.1002/9783527610426.bard110017\">10.1002/9783527610426.bard110017</a>","ieee":"Y. K. Petit, E. Mourad, and S. A. Freunberger, “Lithium–Oxygen batteries,” in <i>Encyclopedia of Electrochemistry</i>, Wiley, 2020, pp. 1–42."},"quality_controlled":"1","date_published":"2020-03-18T00:00:00Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"Wiley","publication":"Encyclopedia of Electrochemistry"},{"pmid":1,"type":"journal_article","abstract":[{"text":"Heterozygous loss of human PAFAH1B1 (coding for LIS1) results in the disruption of neurogenesis and neuronal migration via dysregulation of microtubule (MT) stability and dynein motor function/localization that alters mitotic spindle orientation, chromosomal segregation, and nuclear migration. Recently, human induced pluripotent stem cell (iPSC) models revealed an important role for LIS1 in controlling the length of terminal cell divisions of outer radial glial (oRG) progenitors, suggesting cellular functions of LIS1 in regulating neural progenitor cell (NPC) daughter cell separation. Here we examined the late mitotic stages NPCs in vivo and mouse embryonic fibroblasts (MEFs) in vitro from Pafah1b1-deficient mutants. Pafah1b1-deficient neocortical NPCs and MEFs similarly exhibited cleavage plane displacement with mislocalization of furrow-associated markers, associated with actomyosin dysfunction and cell membrane hyper-contractility. Thus, it suggests LIS1 acts as a key molecular link connecting MTs/dynein and actomyosin, ensuring that cell membrane contractility is tightly controlled to execute proper daughter cell separation.","lang":"eng"}],"citation":{"short":"H.M. Moon, S. Hippenmeyer, L. Luo, A. Wynshaw-Boris, ELife 9 (2020).","apa":"Moon, H. M., Hippenmeyer, S., Luo, L., &#38; Wynshaw-Boris, A. (2020). LIS1 determines cleavage plane positioning by regulating actomyosin-mediated cell membrane contractility. <i>ELife</i>. eLife Sciences Publications. <a href=\"https://doi.org/10.7554/elife.51512\">https://doi.org/10.7554/elife.51512</a>","ama":"Moon HM, Hippenmeyer S, Luo L, Wynshaw-Boris A. LIS1 determines cleavage plane positioning by regulating actomyosin-mediated cell membrane contractility. <i>eLife</i>. 2020;9. doi:<a href=\"https://doi.org/10.7554/elife.51512\">10.7554/elife.51512</a>","ieee":"H. M. Moon, S. Hippenmeyer, L. Luo, and A. Wynshaw-Boris, “LIS1 determines cleavage plane positioning by regulating actomyosin-mediated cell membrane contractility,” <i>eLife</i>, vol. 9. eLife Sciences Publications, 2020.","chicago":"Moon, Hyang Mi, Simon Hippenmeyer, Liqun Luo, and Anthony Wynshaw-Boris. “LIS1 Determines Cleavage Plane Positioning by Regulating Actomyosin-Mediated Cell Membrane Contractility.” <i>ELife</i>. eLife Sciences Publications, 2020. <a href=\"https://doi.org/10.7554/elife.51512\">https://doi.org/10.7554/elife.51512</a>.","ista":"Moon HM, Hippenmeyer S, Luo L, Wynshaw-Boris A. 2020. LIS1 determines cleavage plane positioning by regulating actomyosin-mediated cell membrane contractility. eLife. 9, 51512.","mla":"Moon, Hyang Mi, et al. “LIS1 Determines Cleavage Plane Positioning by Regulating Actomyosin-Mediated Cell Membrane Contractility.” <i>ELife</i>, vol. 9, 51512, eLife Sciences Publications, 2020, doi:<a href=\"https://doi.org/10.7554/elife.51512\">10.7554/elife.51512</a>."},"quality_controlled":"1","publisher":"eLife Sciences Publications","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1101/751958"}],"volume":9,"department":[{"_id":"SiHi"}],"external_id":{"pmid":["32159512"],"isi":["000522835800001"]},"publication_status":"published","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"date_created":"2020-03-20T13:16:41Z","month":"03","scopus_import":"1","_id":"7593","article_number":"51512","year":"2020","publication_identifier":{"issn":["2050-084X"]},"article_type":"original","day":"11","doi":"10.7554/elife.51512","oa":1,"file":[{"file_size":15089438,"creator":"dernst","date_created":"2020-09-24T07:03:20Z","file_name":"2020_elife_Moon.pdf","success":1,"access_level":"open_access","file_id":"8567","date_updated":"2020-09-24T07:03:20Z","relation":"main_file","content_type":"application/pdf","checksum":"396ceb2dd10b102ef4e699666b9342c3"}],"intvolume":"         9","date_published":"2020-03-11T00:00:00Z","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","ddc":["570"],"publication":"eLife","isi":1,"oa_version":"Published Version","language":[{"iso":"eng"}],"status":"public","file_date_updated":"2020-09-24T07:03:20Z","has_accepted_license":"1","article_processing_charge":"No","author":[{"last_name":"Moon","full_name":"Moon, Hyang Mi","first_name":"Hyang Mi"},{"first_name":"Simon","orcid":"0000-0003-2279-1061","last_name":"Hippenmeyer","full_name":"Hippenmeyer, Simon","id":"37B36620-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Liqun","full_name":"Luo, Liqun","last_name":"Luo"},{"first_name":"Anthony","last_name":"Wynshaw-Boris","full_name":"Wynshaw-Boris, Anthony"}],"title":"LIS1 determines cleavage plane positioning by regulating actomyosin-mediated cell membrane contractility","date_updated":"2023-08-18T07:06:31Z"}]