[{"day":"26","date_published":"2026-08-26T00:00:00Z","fulldoi":"https://doi.org/10.1002/qj.70280","language":[{"iso":"eng"}],"supplementarymaterial":"yes","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"abstract":[{"lang":"eng","text":"Physical processes at play in the genesis and evolution of tropical cyclones are conducive to the formation of warm cores at their centres. When the warm anomaly is particularly large in the upper troposphere, it is referred to as a high-level warm core. Previous works documented the generation of high-level warm cores as a consequence of stratospheric air intrusion into the troposphere induced by the upper-level dynamics of a tropical cyclone. However, little attention has been given to their effects on the storm's subsequent evolution. It has been suggested that the presence of a high-level warm core can have opposite effects on tropical cyclone intensity: both strengthening and weakening have been described as possible consequences of its formation. In this study, we examine the role of high-level warm cores in the intensification and dissipation processes of tropical cyclones, as reproduced in numerical models of different complexities, namely the model “System for Atmospheric Modeling” (SAM) run under idealized conditions and the model Nonhydrostatic ICosahedral Atmospheric Model run under realistic conditions following the DYnamics of the Atmospheric general circulation Modeled On Non-hydrostatic Domains summer protocol. Our results confirm the hypothesis of a stratospheric origin behind the formation of high-level warm cores. Their initial role is shown to be an enhancement of storm intensity, by a lowering of the hydrostatic sea-level pressure (HSLP) associated with the presence of warm air aloft. However, as the warm anomaly intensifies and extends to lower levels, it also increases static stability in the air column, with the consequence of inhibiting convection and ultimately contributing to cyclone dissipation. These findings suggest that high-level warm cores play a dual role in the tropical cyclone life cycle, providing a stabilizing mechanism that can limit cyclone strength and longevity."}],"title":"Stratospheric influence on tropical cyclone evolution","date_updated":"2026-09-09T12:43:30Z","project":[{"grant_number":"805041","_id":"629205d8-2b32-11ec-9570-e1356ff73576","name":"Organization of CLoUdS, and implications of Tropical  cyclones and for the Energetics of the tropics, in current and waRming climate","call_identifier":"H2020"}],"type":"journal_article","_id":"22818","status":"public","doi":"10.1002/qj.70280","publisher":"Wiley","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","ddc":["550"],"article_type":"original","publication_status":"epub_ahead","author":[{"last_name":"Davin","first_name":"Andrea","full_name":"Davin, Andrea"},{"id":"7f7cc04c-074c-11ed-af92-eb16afd85c75","first_name":"Giousef Alexandros","full_name":"Charinti, Giousef Alexandros","last_name":"Charinti"},{"first_name":"Caroline J","full_name":"Muller, Caroline J","orcid":"0000-0001-5836-5350","id":"f978ccb0-3f7f-11eb-b193-b0e2bd13182b","last_name":"Muller"},{"last_name":"Polesello","id":"74c777f4-32da-11ee-b498-874db0835561","first_name":"Andrea","full_name":"Polesello, Andrea"},{"last_name":"Pasquero","first_name":"Claudia","full_name":"Pasquero, Claudia"}],"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1002/qj.70280"}],"oa_version":"Published Version","month":"08","article_processing_charge":"Yes (via OA deal)","oa":1,"year":"2026","researchdata_availability":"upon request","publication":"Quarterly Journal of the Royal Meteorological Society","department":[{"_id":"CaMu"},{"_id":"GradSch"}],"scopus_import":"1","date_created":"2026-09-06T22:01:57Z","das_tickbox":"1","has_accepted_license":"1","citation":{"short":"A. Davin, G.A. Charinti, C.J. Muller, A. Polesello, C. Pasquero, Quarterly Journal of the Royal Meteorological Society (2026).","ieee":"A. Davin, G. A. Charinti, C. J. Muller, A. Polesello, and C. Pasquero, “Stratospheric influence on tropical cyclone evolution,” <i>Quarterly Journal of the Royal Meteorological Society</i>. Wiley, 2026.","apa":"Davin, A., Charinti, G. A., Muller, C. J., Polesello, A., &#38; Pasquero, C. (2026). Stratospheric influence on tropical cyclone evolution. <i>Quarterly Journal of the Royal Meteorological Society</i>. Wiley. <a href=\"https://doi.org/10.1002/qj.70280\">https://doi.org/10.1002/qj.70280</a>","chicago":"Davin, Andrea, Giousef Alexandros Charinti, Caroline J Muller, Andrea Polesello, and Claudia Pasquero. “Stratospheric Influence on Tropical Cyclone Evolution.” <i>Quarterly Journal of the Royal Meteorological Society</i>. Wiley, 2026. <a href=\"https://doi.org/10.1002/qj.70280\">https://doi.org/10.1002/qj.70280</a>.","ista":"Davin A, Charinti GA, Muller CJ, Polesello A, Pasquero C. 2026. Stratospheric influence on tropical cyclone evolution. Quarterly Journal of the Royal Meteorological Society., e70280.","mla":"Davin, Andrea, et al. “Stratospheric Influence on Tropical Cyclone Evolution.” <i>Quarterly Journal of the Royal Meteorological Society</i>, e70280, Wiley, 2026, doi:<a href=\"https://doi.org/10.1002/qj.70280\">10.1002/qj.70280</a>.","ama":"Davin A, Charinti GA, Muller CJ, Polesello A, Pasquero C. Stratospheric influence on tropical cyclone evolution. <i>Quarterly Journal of the Royal Meteorological Society</i>. 2026. doi:<a href=\"https://doi.org/10.1002/qj.70280\">10.1002/qj.70280</a>"},"OA_type":"hybrid","OA_place":"publisher","quality_controlled":"1","ec_funded":1,"publication_identifier":{"issn":["0035-9009"],"eissn":["1477-870X"]},"acknowledgement":"The authors thank Tom Beucler, Hamish Ramsay, and two anonymous reviewers for insightful comments and constructive feedback on earlier versions of this work.\r\n\r\nThis work is partially funded by the National Recovery and Resilience Plan project TeRABIT (Terabit network for Research and Academic Big data in Italy—IR0000022—PNRRMissione4—Componente2—Investim ento3.1—CUPI53C21000370006) in the frame of the European Union—NextGenerationEU funding. C. Muller gratefully acknowledges funding from the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation program (Project CLUSTER, Grant 805041). This work is an outcome of the project MIUR—Dipartimenti di Eccellenza 2023–2027.\r\n\r\nThis work used resources of the Deutsches Klimarechenzentrum (DKRZ) granted by its Scientific Steering Committee (WLA) under project bb1153. Open access publishing facilitated by Universita degli Studi di Milano-Bicocca, as part of the Wiley - CRUI-CARE agreement.","dataavailabilitystatement":"The data that support the findings of this study are available from the corresponding author upon reasonable request.","article_number":"e70280"},{"ddc":["520"],"author":[{"full_name":"Schaerer, D.","first_name":"D.","last_name":"Schaerer"},{"last_name":"Izotov","first_name":"Y. I.","full_name":"Izotov, Y. I."},{"first_name":"R.","full_name":"Marques-Chaves, R.","last_name":"Marques-Chaves"},{"last_name":"Steidel","first_name":"C. C.","full_name":"Steidel, C. C."},{"first_name":"N.","full_name":"Reddy, N.","last_name":"Reddy"},{"first_name":"A. E.","full_name":"Shapley, A. E.","last_name":"Shapley"},{"full_name":"Mascia, Sara","first_name":"Sara","id":"edaf889c-c7cd-11ef-ab1b-bb28c431bd29","last_name":"Mascia"},{"last_name":"Chisholm","full_name":"Chisholm, J.","first_name":"J."},{"first_name":"S. R.","full_name":"Flury, S. R.","last_name":"Flury"},{"full_name":"Guseva, N.","first_name":"N.","last_name":"Guseva"},{"full_name":"Heckman, T.","first_name":"T.","last_name":"Heckman"},{"full_name":"Henry, A.","first_name":"A.","last_name":"Henry"},{"full_name":"Inoue, A. K.","first_name":"A. K.","last_name":"Inoue"},{"last_name":"Jung","first_name":"I.","full_name":"Jung, I."},{"last_name":"Kusakabe","first_name":"H.","full_name":"Kusakabe, H."},{"first_name":"K.","full_name":"Mawatari, K.","last_name":"Mawatari"},{"last_name":"Oesch","first_name":"P.","full_name":"Oesch, P."},{"last_name":"Östlin","first_name":"G.","full_name":"Östlin, G."},{"last_name":"Pentericci","full_name":"Pentericci, L.","first_name":"L."},{"first_name":"N.","full_name":"Roy, N.","last_name":"Roy"},{"full_name":"Saldana-Lopez, A.","first_name":"A.","last_name":"Saldana-Lopez"},{"last_name":"Sato","full_name":"Sato, R.","first_name":"R."},{"last_name":"Vanzella","full_name":"Vanzella, E.","first_name":"E."},{"last_name":"Verhamme","first_name":"A.","full_name":"Verhamme, A."},{"full_name":"Wang, B.","first_name":"B.","last_name":"Wang"}],"publication_status":"published","article_type":"original","oa_version":"Published Version","intvolume":"       708","month":"04","oa":1,"year":"2026","article_processing_charge":"No","publication":"Astronomy & Astrophysics","researchdata_availability":"yes","date_created":"2026-09-06T22:01:57Z","das_tickbox":"1","department":[{"_id":"JoMa"}],"scopus_import":"1","has_accepted_license":"1","citation":{"apa":"Schaerer, D., Izotov, Y. I., Marques-Chaves, R., Steidel, C. C., Reddy, N., Shapley, A. E., … Wang, B. (2026). Nitrogen abundances in star-forming galaxies 2.2 Gyr after the Big Bang are not elevated. <i>Astronomy &#38; Astrophysics</i>. EDP Sciences. <a href=\"https://doi.org/10.1051/0004-6361/202556832\">https://doi.org/10.1051/0004-6361/202556832</a>","ieee":"D. Schaerer <i>et al.</i>, “Nitrogen abundances in star-forming galaxies 2.2 Gyr after the Big Bang are not elevated,” <i>Astronomy &#38; Astrophysics</i>, vol. 708. EDP Sciences, 2026.","short":"D. Schaerer, Y.I. Izotov, R. Marques-Chaves, C.C. Steidel, N. Reddy, A.E. Shapley, S. Mascia, J. Chisholm, S.R. Flury, N. Guseva, T. Heckman, A. Henry, A.K. Inoue, I. Jung, H. Kusakabe, K. Mawatari, P. Oesch, G. Östlin, L. Pentericci, N. Roy, A. Saldana-Lopez, R. Sato, E. Vanzella, A. Verhamme, B. Wang, Astronomy &#38; Astrophysics 708 (2026).","chicago":"Schaerer, D., Y. I. Izotov, R. Marques-Chaves, C. C. Steidel, N. Reddy, A. E. Shapley, Sara Mascia, et al. “Nitrogen Abundances in Star-Forming Galaxies 2.2 Gyr after the Big Bang Are Not Elevated.” <i>Astronomy &#38; Astrophysics</i>. EDP Sciences, 2026. <a href=\"https://doi.org/10.1051/0004-6361/202556832\">https://doi.org/10.1051/0004-6361/202556832</a>.","ista":"Schaerer D, Izotov YI, Marques-Chaves R, Steidel CC, Reddy N, Shapley AE, Mascia S, Chisholm J, Flury SR, Guseva N, Heckman T, Henry A, Inoue AK, Jung I, Kusakabe H, Mawatari K, Oesch P, Östlin G, Pentericci L, Roy N, Saldana-Lopez A, Sato R, Vanzella E, Verhamme A, Wang B. 2026. Nitrogen abundances in star-forming galaxies 2.2 Gyr after the Big Bang are not elevated. Astronomy &#38; Astrophysics. 708, A242.","ama":"Schaerer D, Izotov YI, Marques-Chaves R, et al. Nitrogen abundances in star-forming galaxies 2.2 Gyr after the Big Bang are not elevated. <i>Astronomy &#38; Astrophysics</i>. 2026;708. doi:<a href=\"https://doi.org/10.1051/0004-6361/202556832\">10.1051/0004-6361/202556832</a>","mla":"Schaerer, D., et al. “Nitrogen Abundances in Star-Forming Galaxies 2.2 Gyr after the Big Bang Are Not Elevated.” <i>Astronomy &#38; Astrophysics</i>, vol. 708, A242, EDP Sciences, 2026, doi:<a href=\"https://doi.org/10.1051/0004-6361/202556832\">10.1051/0004-6361/202556832</a>."},"quality_controlled":"1","arxiv":1,"OA_place":"publisher","PlanS_conform":"1","OA_type":"diamond","publication_identifier":{"issn":["0004-6361"],"eissn":["1432-0746"]},"volume":708,"article_number":"A242","dataavailabilitystatement":"The data used are publicly available at the Mikulski Archive for Space Telescope (MAST),\r\nand can be accessed at https://dx.doi.org/10.17909/x6d5-vd44.","acknowledgement":"Y.I., N.G., R.M.-C., and D.S. acknowledge support from\r\nproject No. 224866 carried out in the framework of the Joint Call “UkrainianSwiss Joint Research Projects: Call for Proposals 2023”. This work is based in\r\npart on observations made with the NASA/ESA/CSA James Webb Space Telescope. The data were obtained from the Mikulski Archive for Space Telescopes\r\nat the Space Telescope Science Institute, which is operated by the Association\r\nof Universities for Research in Astronomy, Inc., under NASA contract NAS 5-\r\n03127 for JWST. These observations are associated with program # 1869. Support for program # 1869 was provided by NASA through a grant from the Space\r\nTelescope Science Institute, which is operated by the Association of Universities\r\nfor Research in Astronomy, Inc., under NASA contract NAS 5-03127","date_published":"2026-04-01T00:00:00Z","day":"01","language":[{"iso":"eng"}],"fulldoi":"https://doi.org/10.1051/0004-6361/202556832","file":[{"checksum":"94cc1327f363d69995984b06e18e2645","date_updated":"2026-09-09T12:55:37Z","file_size":591297,"success":1,"creator":"dernst","relation":"main_file","date_created":"2026-09-09T12:55:37Z","file_id":"22890","access_level":"open_access","file_name":"2026_AstronomyAstrophysics_Schaerer.pdf","content_type":"application/pdf"}],"external_id":{"arxiv":["2601.06968"]},"supplementarymaterial":"no","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"abstract":[{"lang":"eng","text":"Using deep, medium-resolution, JWST rest-optical spectra of a sample of typical star-forming galaxies (Lyman-break galaxies and Lyman-α emitters) from the LyC22 survey at z ∼ 3, we determined the nebular abundances of N, O, and Ne relative to H for a subsample of 25 objects with a direct method based on auroral [O III] λ4363 line detections. Our measurements increased the number of accurate N/O determinations at z ∼ 2 − 4 using a homogeneous approach. We found a mean value of log(N/O) = −+0.25−0.21 over a metallicity range of 12 + log(O/H) = 7.56 to 8.44. The observed N/O ratio and scatter are indistinguishable from that observed in low-z galaxies and H II regions over the same metallicity range, thus showing no redshift evolution of N/O for typical galaxies over a significant fraction of cosmic time. We also show that typical z ∼ 3 galaxies have a similar offset in the BPT diagram to galaxies from the low-z Lyman Continuum Survey (LzLCS) when compared to the average of SDSS galaxies, and we demonstrate that this offset is not due to enhanced nitrogen abundances. Our results establish a basis for future studies of the evolution of N and O at higher redshifts."}],"file_date_updated":"2026-09-09T12:55:37Z","title":"Nitrogen abundances in star-forming galaxies 2.2 Gyr after the Big Bang are not elevated","date_updated":"2026-09-09T12:59:51Z","status":"public","_id":"22817","type":"journal_article","doi":"10.1051/0004-6361/202556832","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","DOAJ_listed":"1","publisher":"EDP Sciences"},{"month":"08","oa_version":"None","year":"2026","article_processing_charge":"No","author":[{"last_name":"Saha","first_name":"Subham","full_name":"Saha, Subham"},{"first_name":"Shreyasi","full_name":"Das, Shreyasi","id":"c102f9d5-4f26-11ef-94d5-9047d2a9105b","last_name":"Das"},{"first_name":"Baidyanath","full_name":"Roy, Baidyanath","last_name":"Roy"},{"last_name":"Ghosh","full_name":"Ghosh, Santu Kumar","first_name":"Santu Kumar"},{"last_name":"Satpathy","full_name":"Satpathy, Rohit","first_name":"Rohit"},{"last_name":"Bullock","first_name":"James","full_name":"Bullock, James"},{"full_name":"Unnithan, Ranjith R.","first_name":"Ranjith R.","last_name":"Unnithan"},{"full_name":"Ray, Samit K.","first_name":"Samit K.","last_name":"Ray"}],"publication_status":"epub_ahead","publication_identifier":{"issn":["1613-6810"],"eissn":["1613-6829"]},"quality_controlled":"1","OA_type":"closed access","article_number":"e75437","acknowledgement":"SS sincerely acknowledges the fellowship received from the Ministryof Education, Government of India, to carry out this research. SKRacknowledges the financial support from DST Nano-mission (Projectno. DST/NM/TUE/QM8 2019G 5). The authors also thank the CentralResearch Facility (CRF) at IIT Kharagpur for providing the characteriza-tion tools.","dataavailabilitystatement":"The data that support the findings of this study are available in theSupporting Information of this article.","date_created":"2026-09-06T22:01:58Z","das_tickbox":"1","department":[{"_id":"HrPo"}],"scopus_import":"1","publication":"Small","researchdata_availability":"no","citation":{"ista":"Saha S, Das S, Roy B, Ghosh SK, Satpathy R, Bullock J, Unnithan RR, Ray SK. 2026. Interface engineered perovskite-oxide heterojunction all-photonic synapses for multibit memory, optical logic, and wearable neuromorphic vision. Small., e75437.","ama":"Saha S, Das S, Roy B, et al. Interface engineered perovskite-oxide heterojunction all-photonic synapses for multibit memory, optical logic, and wearable neuromorphic vision. <i>Small</i>. 2026. doi:<a href=\"https://doi.org/10.1002/smll.75437\">10.1002/smll.75437</a>","mla":"Saha, Subham, et al. “Interface Engineered Perovskite-Oxide Heterojunction All-Photonic Synapses for Multibit Memory, Optical Logic, and Wearable Neuromorphic Vision.” <i>Small</i>, e75437, Wiley, 2026, doi:<a href=\"https://doi.org/10.1002/smll.75437\">10.1002/smll.75437</a>.","apa":"Saha, S., Das, S., Roy, B., Ghosh, S. K., Satpathy, R., Bullock, J., … Ray, S. K. (2026). Interface engineered perovskite-oxide heterojunction all-photonic synapses for multibit memory, optical logic, and wearable neuromorphic vision. <i>Small</i>. Wiley. <a href=\"https://doi.org/10.1002/smll.75437\">https://doi.org/10.1002/smll.75437</a>","ieee":"S. Saha <i>et al.</i>, “Interface engineered perovskite-oxide heterojunction all-photonic synapses for multibit memory, optical logic, and wearable neuromorphic vision,” <i>Small</i>. Wiley, 2026.","short":"S. Saha, S. Das, B. Roy, S.K. Ghosh, R. Satpathy, J. Bullock, R.R. Unnithan, S.K. Ray, Small (2026).","chicago":"Saha, Subham, Shreyasi Das, Baidyanath Roy, Santu Kumar Ghosh, Rohit Satpathy, James Bullock, Ranjith R. Unnithan, and Samit K. Ray. “Interface Engineered Perovskite-Oxide Heterojunction All-Photonic Synapses for Multibit Memory, Optical Logic, and Wearable Neuromorphic Vision.” <i>Small</i>. Wiley, 2026. <a href=\"https://doi.org/10.1002/smll.75437\">https://doi.org/10.1002/smll.75437</a>."},"keyword":["all-optical synapse","bidirectional photoresponse","defect engineering","flexible neuromorphic vision","multibit nonvolatile memory","negativephotoconductivity","optical logic gate"],"supplementarymaterial":"yes","day":"25","date_published":"2026-08-25T00:00:00Z","external_id":{"pmid":["42643004"]},"language":[{"iso":"eng"}],"fulldoi":"https://doi.org/10.1002/smll.75437","_id":"22819","status":"public","type":"journal_article","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"Wiley","doi":"10.1002/smll.75437","title":"Interface engineered perovskite-oxide heterojunction all-photonic synapses for multibit memory, optical logic, and wearable neuromorphic vision","abstract":[{"lang":"eng","text":"Bio-inspired photonic synapses integrate optical sensing, memory, and processing in a single platform, overcoming the bottlenecks of traditional CMOS-based vision sensors. Most existing neuromorphic vision systems either rely on electrical inputs for bidirectional conductance modulation, limiting their operating speed and bandwidth, or lack nonvolatility, leading to nonlinear weight updates and poor efficiency in image recognition tasks. Here, we report a two-terminal, fully light-controlled synaptic memristor based on CsPbBr3/ZnO nanorod heterojunction that demonstrates 4-bit memory storage and optical logic operations within a single architecture. The device emulates essential functions of both excitatory and inhibitory synapses, utilizing positive photoconductivity under UV illumination (λ = 375 nm) and anomalous negative photoconductivity under visible light (λ = 450 nm). By controlling defect concentrations at the CsPbBr3/ZnO nanorod interface, the device exhibits nonvolatile multibit memory with near-linear, symmetric conductance modulation, achieving 92.4% image recognition accuracy with a convolutional neural network. The bidirectional photoresponse enables reconfigurable optical logic operations, demonstrating integrated logic-in-memory. Additionally, when integrated on a flexible platform, the device demonstrates stable synaptic performance under repeated mechanical bending. These results highlight the potential of CsPbBr3/ZnO nanorod heterojunction-based all-photonic synapses as building blocks for multibit storage, optical information processing, and wearable neuromorphic vision systems."}],"pmid":1,"date_updated":"2026-09-09T13:40:30Z"},{"language":[{"iso":"eng"}],"fulldoi":"https://doi.org/10.1515/crelle-2026-0062","external_id":{"arxiv":["2212.10373"]},"day":"25","date_published":"2026-08-25T00:00:00Z","doi":"10.1515/crelle-2026-0062","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"De Gruyter","status":"public","_id":"22821","project":[{"grant_number":"P32428","_id":"26AEDAB2-B435-11E9-9278-68D0E5697425","name":"New frontiers of the Manin conjecture","call_identifier":"FWF"}],"type":"journal_article","date_updated":"2026-09-09T13:28:45Z","abstract":[{"text":"With probability 1, we assess the average behaviour of various arithmetic functions at the values of degree 𝑑 polynomials 𝑓∈ℤ⁢[𝑡] that are ordered by height. This allows us to establish averaged versions of the Bateman–Horn conjecture, the polynomial Chowla conjecture and to address a basic question about the integral Hasse principle for norm form equations. Moreover, we are able to quantify the error term in the asymptotics and the size of the exceptional set of 𝑓, both with arbitrary logarithmic power savings.","lang":"eng"}],"title":"Bateman-Horn, polynomial Chowla and the Hasse principle with probability","year":"2026","oa":1,"article_processing_charge":"No","oa_version":"Preprint","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2212.10373"}],"month":"08","author":[{"last_name":"Browning","id":"35827D50-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8314-0177","full_name":"Browning, Timothy D","first_name":"Timothy D"},{"last_name":"Sofos","first_name":"Efthymios","full_name":"Sofos, Efthymios"},{"last_name":"Teräväinen","full_name":"Teräväinen, Joni","first_name":"Joni"}],"article_type":"original","publication_status":"epub_ahead","acknowledgement":"Tim Browning was supported by an FWF grant (DOI 10.55776/P32428), Efthymios Sofos was supported by EPSRC New Horizons grant EP/V048236/1, and Joni Teräväinen was supported by Academy of Finland grant no. 340098, a von Neumann Fellowship (NSF grant DMS-1926686), and funding from European Union’s Horizon Europe research and innovation programme under Marie Skłodowska-Curie grant agreement no. 101058904. This material is based upon work supported by a grant from the Institute for Advanced Study School of Mathematics. The authors are extremely grateful to the anonymous referee and to Yijie Diao for useful comments.","arxiv":1,"quality_controlled":"1","OA_place":"repository","OA_type":"green","publication_identifier":{"issn":["0075-4102"],"eissn":["1435-5345"]},"citation":{"short":"T.D. Browning, E. Sofos, J. Teräväinen, Journal Für Die Reine Und Angewandte Mathematik (2026).","apa":"Browning, T. D., Sofos, E., &#38; Teräväinen, J. (2026). Bateman-Horn, polynomial Chowla and the Hasse principle with probability. <i>Journal Für Die Reine Und Angewandte Mathematik</i>. De Gruyter. <a href=\"https://doi.org/10.1515/crelle-2026-0062\">https://doi.org/10.1515/crelle-2026-0062</a>","ieee":"T. D. Browning, E. Sofos, and J. Teräväinen, “Bateman-Horn, polynomial Chowla and the Hasse principle with probability,” <i>Journal für die reine und angewandte Mathematik</i>. De Gruyter, 2026.","chicago":"Browning, Timothy D, Efthymios Sofos, and Joni Teräväinen. “Bateman-Horn, Polynomial Chowla and the Hasse Principle with Probability.” <i>Journal Für Die Reine Und Angewandte Mathematik</i>. De Gruyter, 2026. <a href=\"https://doi.org/10.1515/crelle-2026-0062\">https://doi.org/10.1515/crelle-2026-0062</a>.","ista":"Browning TD, Sofos E, Teräväinen J. 2026. Bateman-Horn, polynomial Chowla and the Hasse principle with probability. Journal für die reine und angewandte Mathematik.","mla":"Browning, Timothy D., et al. “Bateman-Horn, Polynomial Chowla and the Hasse Principle with Probability.” <i>Journal Für Die Reine Und Angewandte Mathematik</i>, De Gruyter, 2026, doi:<a href=\"https://doi.org/10.1515/crelle-2026-0062\">10.1515/crelle-2026-0062</a>.","ama":"Browning TD, Sofos E, Teräväinen J. Bateman-Horn, polynomial Chowla and the Hasse principle with probability. <i>Journal für die reine und angewandte Mathematik</i>. 2026. doi:<a href=\"https://doi.org/10.1515/crelle-2026-0062\">10.1515/crelle-2026-0062</a>"},"corr_author":"1","publication":"Journal für die reine und angewandte Mathematik","date_created":"2026-09-06T22:01:58Z","department":[{"_id":"TiBr"}],"scopus_import":"1"},{"publication_status":"published","author":[{"last_name":"Dziembowski","first_name":"Stefan","full_name":"Dziembowski, Stefan"},{"last_name":"Faust","full_name":"Faust, Sebastian","first_name":"Sebastian"},{"last_name":"Kedzior","full_name":"Kedzior, Paweł","first_name":"Paweł"},{"last_name":"Mielniczuk","full_name":"Mielniczuk, Marcin","first_name":"Marcin"},{"last_name":"Mohanty","first_name":"Susil Kumar","full_name":"Mohanty, Susil Kumar"},{"last_name":"Pietrzak","id":"3E04A7AA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-9139-1654","full_name":"Pietrzak, Krzysztof Z","first_name":"Krzysztof Z"}],"main_file_link":[{"url":"https://doi.org/10.1007/978-3-032-35374-0_5","open_access":"1"}],"oa_version":"Published Version","intvolume":"     16801","month":"08","article_processing_charge":"No","year":"2026","oa":1,"researchdata_availability":"no","publication":"46th Annual International Cryptology Conference","scopus_import":"1","department":[{"_id":"KrPi"}],"das_tickbox":"0","date_created":"2026-09-06T22:01:58Z","alternative_title":["LNCS"],"citation":{"ieee":"S. Dziembowski, S. Faust, P. Kedzior, M. Mielniczuk, S. K. Mohanty, and K. Z. Pietrzak, “Beholder signatures,” in <i>46th Annual International Cryptology Conference</i>, Santa Barbara, CA, United States, 2026, vol. 16801, pp. 134–165.","apa":"Dziembowski, S., Faust, S., Kedzior, P., Mielniczuk, M., Mohanty, S. K., &#38; Pietrzak, K. Z. (2026). Beholder signatures. In <i>46th Annual International Cryptology Conference</i> (Vol. 16801, pp. 134–165). Santa Barbara, CA, United States: Springer. <a href=\"https://doi.org/10.1007/978-3-032-35374-0_5\">https://doi.org/10.1007/978-3-032-35374-0_5</a>","short":"S. Dziembowski, S. Faust, P. Kedzior, M. Mielniczuk, S.K. Mohanty, K.Z. Pietrzak, in:, 46th Annual International Cryptology Conference, Springer, 2026, pp. 134–165.","chicago":"Dziembowski, Stefan, Sebastian Faust, Paweł Kedzior, Marcin Mielniczuk, Susil Kumar Mohanty, and Krzysztof Z Pietrzak. “Beholder Signatures.” In <i>46th Annual International Cryptology Conference</i>, 16801:134–65. Springer, 2026. <a href=\"https://doi.org/10.1007/978-3-032-35374-0_5\">https://doi.org/10.1007/978-3-032-35374-0_5</a>.","ista":"Dziembowski S, Faust S, Kedzior P, Mielniczuk M, Mohanty SK, Pietrzak KZ. 2026. Beholder signatures. 46th Annual International Cryptology Conference. CRYPTO: International Cryptology Conference, LNCS, vol. 16801, 134–165.","ama":"Dziembowski S, Faust S, Kedzior P, Mielniczuk M, Mohanty SK, Pietrzak KZ. Beholder signatures. In: <i>46th Annual International Cryptology Conference</i>. Vol 16801. Springer; 2026:134-165. doi:<a href=\"https://doi.org/10.1007/978-3-032-35374-0_5\">10.1007/978-3-032-35374-0_5</a>","mla":"Dziembowski, Stefan, et al. “Beholder Signatures.” <i>46th Annual International Cryptology Conference</i>, vol. 16801, Springer, 2026, pp. 134–65, doi:<a href=\"https://doi.org/10.1007/978-3-032-35374-0_5\">10.1007/978-3-032-35374-0_5</a>."},"OA_type":"free access","OA_place":"publisher","quality_controlled":"1","volume":16801,"publication_identifier":{"isbn":["9783032353733"],"issn":["0302-9743"],"eissn":["1611-3349"]},"acknowledgement":"We used generative AI for grammar, spell checking, and basic editing. This research was funded in whole or in part by the Austrian Science Fund (FWF) 10.55776/F85. This work has been partially funded by the European Research Council (ERC) under the European Union’s Horizon 2020 innovation program (grant CRYPTOLAYER-101044770), and by the European Research Council under the European Union’s Horizon 2020 innovation program (grant PROCONTRA-885666).","day":"11","date_published":"2026-08-11T00:00:00Z","fulldoi":"https://doi.org/10.1007/978-3-032-35374-0_5","language":[{"iso":"eng"}],"external_id":{"cryptoeprintid":["2025/1900"]},"supplementarymaterial":"no","cryptoeprintid":1,"conference":{"start_date":"2026-08-17","location":"Santa Barbara, CA, United States","name":"CRYPTO: International Cryptology Conference","end_date":"2026-08-20"},"abstract":[{"lang":"eng","text":"We introduce a new primitive, called beholder signatures (Full version [14] of the paper is available at https://eprint.iacr.org/2025/1900), which, in some sense, are the opposite of blind signatures. In a beholder signature, one signs a commitment to a (potentially very long) message, and the signature attests that the parties participating in the signing process, who know the secret key, jointly also know the entire committed message. This guarantee holds even against distributed adversaries that use secure multi-party computation (MPC) to produce the signature. We work in the distributed adversarial model (Dziembowski, Faust, and Lizurej, Crypto’23), where one assumes that it is infeasible to evaluate a large number of hash queries without any of the participating parties learning the input. We propose a construction of beholder signatures in the random oracle model. The starting point of our construction is proofs of complete knowledge, recently proposed by (Kelkar et al. CCS’24), which build on Fischlin’s transformation of a sigma protocol to a non-interactive, straight-line extractable zero-knowledge proof of knowledge. Our scheme is concretely efficient and comes with a proof-of-concept implementation using Schnorr as the underlying sigma protocol.\r\n\r\nThe primary applications of beholder signatures can be found within the blockchain space. In particular, we describe how to use them to construct proofs of custody (Feist, 2021) that do not require ephemeral keys and are non-interactive. We also outline applications to data dissemination, data availability, and proofs of replication."}],"title":"Beholder signatures","date_updated":"2026-09-10T06:21:13Z","page":"134-165","project":[{"grant_number":"F8509","name":"Security and Privacy by Design for Complex Systems","_id":"34a34d57-11ca-11ed-8bc3-a2688a8724e1"}],"type":"conference","status":"public","_id":"22820","doi":"10.1007/978-3-032-35374-0_5","publisher":"Springer","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"author":[{"first_name":"Thomas","full_name":"Werner, Thomas","orcid":"0009-0001-2346-5236","id":"1fcd8497-dba3-11ea-a45e-c6fbd715f7c7","last_name":"Werner"}],"publication_status":"published","ddc":["530","537","539"],"oa":1,"year":"2026","article_processing_charge":"No","degree_awarded":"PhD","month":"05","oa_version":"Published Version","citation":{"ama":"Werner T. Interfacing superconducting qubits with optical photons. 2026. doi:<a href=\"https://doi.org/10.15479/AT-ISTA-21863\">10.15479/AT-ISTA-21863</a>","mla":"Werner, Thomas. <i>Interfacing Superconducting Qubits with Optical Photons</i>. Institute of Science and Technology Austria, 2026, doi:<a href=\"https://doi.org/10.15479/AT-ISTA-21863\">10.15479/AT-ISTA-21863</a>.","ista":"Werner T. 2026. Interfacing superconducting qubits with optical photons. Institute of Science and Technology Austria.","chicago":"Werner, Thomas. “Interfacing Superconducting Qubits with Optical Photons.” Institute of Science and Technology Austria, 2026. <a href=\"https://doi.org/10.15479/AT-ISTA-21863\">https://doi.org/10.15479/AT-ISTA-21863</a>.","short":"T. Werner, Interfacing Superconducting Qubits with Optical Photons, Institute of Science and Technology Austria, 2026.","apa":"Werner, T. (2026). <i>Interfacing superconducting qubits with optical photons</i>. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT-ISTA-21863\">https://doi.org/10.15479/AT-ISTA-21863</a>","ieee":"T. Werner, “Interfacing superconducting qubits with optical photons,” Institute of Science and Technology Austria, 2026."},"corr_author":"1","acknowledged_ssus":[{"_id":"M-Shop"},{"_id":"NanoFab"},{"_id":"LifeSc"},{"_id":"SSU"}],"has_accepted_license":"1","alternative_title":["ISTA Thesis"],"related_material":{"record":[{"id":"19073","status":"public","relation":"part_of_dissertation"},{"id":"21870","status":"public","relation":"part_of_dissertation"}]},"date_created":"2026-05-12T09:04:02Z","department":[{"_id":"GradSch"},{"_id":"JoFi"}],"acknowledgement":"The author of this work was supported by the European Research Council under grant no.\r\n101089099 (ERC CoG cQEO) and the European Union’s Horizon 2020 research and innovation\r\nprogram under grant no. 899354 (FETopen SuperQuLAN).\r\nThis work was also supported by the European Research Council under grant nos. 758053\r\n(ERC StG QUNNECT), 101248662 (ERC POC CoupledEOT), and the European Innovation\r\nCouncil no. 101187231 (PathfinderOpen CIELO). This research was funded in whole or in part\r\nby the Austrian Science Fund (FWF) [10.55776/F71]. For open access purposes, the author\r\nhas applied a CC BY public copyright license to any author accepted manuscript version arising\r\nfrom this submission.\r\niii\r\nMy co-authors in the works mentioned later acknowledge generous support from the ISTFELLOW program, the NOMIS-ISTA fellowship, the Horizon Europe Program HORIZONCL4-2022-QUANTUM-01-SGA via Project No. 101113946 OpenSuperQPlus100 and a DOC fellowship of the Austrian Academy of Sciences at IST Austria.\r\n","supervisor":[{"first_name":"Johannes M","full_name":"Fink, Johannes M","orcid":"0000-0001-8112-028X","id":"4B591CBA-F248-11E8-B48F-1D18A9856A87","last_name":"Fink"}],"ec_funded":1,"publication_identifier":{"issn":["2663-337X"]},"OA_place":"publisher","language":[{"iso":"eng"}],"file":[{"file_id":"21879","access_level":"open_access","content_type":"application/pdf","file_name":"2026_Werner_Thomas_Thesis.pdf","checksum":"a5b4d8dba83f96e955a3625c0eebee98","date_updated":"2026-05-15T15:53:57Z","file_size":9330516,"creator":"twerner","date_created":"2026-05-15T15:53:57Z","relation":"main_file"},{"access_level":"closed","file_id":"21880","content_type":"application/x-zip-compressed","file_name":"2026_Werner_Thomas_Thesis.zip","file_size":9370704,"checksum":"b41282beaacfb32472769b9e3b1758d8","date_updated":"2026-05-15T15:54:06Z","date_created":"2026-05-15T15:54:06Z","relation":"source_file","creator":"twerner"}],"fulldoi":"https://doi.org/10.15479/AT-ISTA-21863","date_published":"2026-05-12T00:00:00Z","day":"12","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"keyword":["Superconducting qubits","Quantum optics","Single photons and quantum effects","Nonlinear optics"],"page":"97","date_updated":"2026-09-14T07:08:54Z","title":"Interfacing superconducting qubits with optical photons","abstract":[{"lang":"eng","text":"Atoms and photons, two things so different but yet so alike. The former, the building block of matter, something we learn about in school and imagine it as some tiny marbles encircled by other tinier marbles. The latter, an electromagnetic wave, a light particle or an excitation of the electromagnetic field. Quantum mechanics tells us about the properties of these two entities. And even if it sounds, looks and writes counter-intuitive, it has proven right for over a century now.\r\n\r\nIn this work, I elaborate on how we tested the laws of quantum mechanics and how we used them learn more about the tiny building blocks of nature and the fields they use to talk to each other. The atoms we use, are artificial. Superconducting qubits, small electrical circuits with quantized energy levels behave like electrons that transition between different orbitals in an atom. One of the qubits' advantages, is also a big disadvantage. We design the circuits' energy levels and fabricate them in a cleanroom. This allows for arbitrary spaced energy levels but in contrast to real atoms, prevents two superconducting qubits from being alike. Still, this qubit platform is one of the frontrunners for future quantum computing technology and testing fundamental physics due to their scalability.\r\n\r\nWe interface superconducting qubits, which operate in the GHz regime, with microwave photons. We use 3D aluminum cavities as mediators between qubits and photons. The cavities allow for non-destructive readout of the qubit state, they shield the qubits from noise at the qubit frequency and they give us an easy way to frequency-tune these joint systems.\r\n\r\nWe need to operate superconducting qubits and their cavities at millikelvin temperatures in dilution refrigerators. At higher temperatures, superconductivity suffers and even worse, the environment is filled with thermal noise photons. This poses a fundamental limitation on the scalability of superconducting qubit devices. Also connecting multiple devices in different fridges does not work over room temperature links because the microwave photons used for this purpose will be covered in noise and the quantum information they carry, will be unusable.\r\n\r\nInfrared photons do not suffer from this noise problem since there are close to zero thermal noise photons at their frequencies at room temperature. We cannot simply interface superconducting devices with optical photons due their frequency mismatch and the destructive effect of optical photons on superconductors. Therefore, we use microwave-to-optics transducers that allow to convert microwave photons into optical ones and vice-versa. The transducers that we use are macroscopic electro-optic transducers using the Pockels effect in a disk-shaped Lithium Niobate whispering gallery mode resonator. By using a strong optical pump, photons from the two frequency domains experience a beam-splitter interaction and get converted from one to the other.\r\n\r\nWe measure the generated optical photons using elaborate optical setups, optical heterodyning and single photon detectors to gain knowledge about the qubit state or the converted microwave photons. Bridging the microwave and the optical world allows us to take advantage of both of their strengths but it also requires deep knowledge about both of their working principles.\r\n\r\nIn this work, we describe two experiments that our group conducted to showcase the opportunities that arise from interfacing superconducting qubits with optical photons but also the pitfalls, one may encounter on the way.\r\n\r\nIn the first experiment, we managed to all-optically read out a superconducting qubit. We show that the assignment fidelity, the probability that a measurement of the qubit state matches the prepared state, is close to equal for all-optical, microwave-to-optics and conventional microwave readout. We show T1 and T2 measurements for all three readout types and give an analysis of the noise caused by the optics. Finally, we show that the infrared light does not affect the qubit performance in a negative way but that the heating it causes does. This is an important insight that we used in the next experiment.\r\n\r\nThe second experiment is the upconversion of itinerant single microwave photons to the optical domain. We show that we can generate single microwave photons from a qubit-cavity system. We upconvert these single photons, measure them with a single photon detector and reconstruct their shape. By conducting a single photon Rabi measurement, we show correlations between the microwave and the optical domain. And by thorough signal-to-noise measurements and noise analysis, we find that we can generate single infrared photons with high signal-to-noise ratio 5.1 and low transducer added noise (<0.012 quanta). We show that this measurement creates a path towards entanglement of a superconducting qubit and an optical photon and what parameters need to be improved to achieve it. Additionally, this experiment is a proof of principle for an on-demand infrared single photon source. More generally, it allows to link microwave quantum technology in general to the optical domain."}],"file_date_updated":"2026-05-15T15:54:06Z","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","publisher":"Institute of Science and Technology Austria","doi":"10.15479/AT-ISTA-21863","status":"public","_id":"21863","project":[{"grant_number":"101089099","name":"Cavity Quantum Electro Optics: Microwave photonics with nonclassical states","_id":"bdadfa0d-d553-11ed-ba76-fb85edbd456a"},{"grant_number":"899354","_id":"9B868D20-BA93-11EA-9121-9846C619BF3A","name":"Quantum Local Area Networks with Superconducting Qubits","call_identifier":"H2020"},{"grant_number":"758053","name":"A Fiber Optic Transceiver for Superconducting Qubits","call_identifier":"H2020","_id":"26336814-B435-11E9-9278-68D0E5697425"},{"grant_number":"101248662","_id":"5b807754-ab3d-11f0-914f-ff8c34502cc9","name":"Integrated optical coupling for low loss electro-optic interconnects"},{"name":"Cavity-Integrated Electro-Optics: Measuring, Converting and Manipulating Microwaves with Light","_id":"91aaf765-16d5-11f0-9cad-a8e7e44cccb7","grant_number":"101187231"},{"_id":"bdb108fd-d553-11ed-ba76-83dc74a9864f","name":"QUANTUM INFORMATION SYSTEMS BEYOND CLASSICAL CAPABILITIES / P5- Integration of Superconducting Quantum Circuits","grant_number":"F07105"},{"grant_number":"101080139","_id":"bdb7cfc1-d553-11ed-ba76-d2eaab167738","name":"Open Superconducting Quantum Computers (OpenSuperQPlus)"},{"_id":"9B861AAC-BA93-11EA-9121-9846C619BF3A","name":"NOMIS Fellowship Program"}],"type":"dissertation"},{"type":"preprint","project":[{"_id":"bdadfa0d-d553-11ed-ba76-fb85edbd456a","name":"Cavity Quantum Electro Optics: Microwave photonics with nonclassical states","grant_number":"101089099"},{"grant_number":"101248662","name":"Integrated optical coupling for low loss electro-optic interconnects","_id":"5b807754-ab3d-11f0-914f-ff8c34502cc9"},{"name":"Quantum Local Area Networks with Superconducting Qubits","call_identifier":"H2020","_id":"9B868D20-BA93-11EA-9121-9846C619BF3A","grant_number":"899354"},{"_id":"91aaf765-16d5-11f0-9cad-a8e7e44cccb7","name":"Cavity-Integrated Electro-Optics: Measuring, Converting and Manipulating Microwaves with Light","grant_number":"101187231"},{"name":"NOMIS Fellowship Program","_id":"9B861AAC-BA93-11EA-9121-9846C619BF3A"},{"grant_number":"F07105","name":"QUANTUM INFORMATION SYSTEMS BEYOND CLASSICAL CAPABILITIES / P5- Integration of Superconducting Quantum Circuits","_id":"bdb108fd-d553-11ed-ba76-83dc74a9864f"}],"status":"public","_id":"21870","doi":"10.48550/arXiv.2602.00928","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","abstract":[{"lang":"eng","text":"Superconducting qubits are a leading candidate for utility-scale quantum computing due to their fast gate speeds and steadily decreasing error rates. The requirement for millikelvin operating temperatures, however, creates a significant scaling bottleneck. Modular architectures using optical fiber links could bridge separate cryogenic nodes, but superconducting circuits do not have coherent optical transitions and microwave-to-optical conversion has not been shown for any non-classical photon state. In this work, we demonstrate the on-demand generation and tomographic reconstruction of itinerant single microwave photons at 8.9 GHz from a superconducting qubit. We upconvert this non-Gaussian state with a transducer added noise below 0.012 quanta and count the converted telecom photons at 193.4 THz with a signal-to-noise ratio of up to 5.1$\\pm$1.1. We characterize the trade-offs between throughput and noise, and establish a viable path toward heralded entanglement distribution and gate teleportation. Looking ahead, these results empower existing superconducting devices to take a key role in distributed quantum technologies and heterogeneous quantum systems."}],"title":"Electro-optic conversion of itinerant Fock states","date_updated":"2026-09-14T07:08:55Z","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"day":"31","date_published":"2026-01-31T00:00:00Z","fulldoi":"https://doi.org/10.48550/arXiv.2602.00928","language":[{"iso":"eng"}],"external_id":{"arxiv":["2602.00928"]},"OA_type":"green","arxiv":1,"OA_place":"repository","ec_funded":1,"acknowledgement":"We thank Fritz Diorico and Onur Hosten who suggested the filter cavity design, and gave important insights about the assembly and the testing of the FabryPerot filter cavities. Ekatrina Fedotova and Diego A.\r\nLancheros Naranjo worked on the filter cavity setup in\r\nthe early stages of this work. Gustavo Wiederhecker and\r\nYiewen Chu provided insights as to the origins of the\r\nobserved optical noise and Nicola Carlon Zambon suggested using telecom filters to mitigate it further. This\r\nwork was supported by the European Research Council under grant agreement no. 101089099 (ERC CoG\r\ncQEO), and 101248662 (ERC POC CoupledEOT), the\r\nEuropean Unions Horizon 2020 research and innovation\r\nprogram under grant agreement no. 899354 (FETopen\r\nSuperQuLAN), the European Innovation Council no.\r\n101187231 (PathfinderOpen CIELO), and the Austrian\r\nScience Fund (FWF) no. F7105 (SFB BeyondC). J.F.\r\nand L.K. acknowledge support from the Horizon Europe\r\nProgram HORIZON-CL4-2022-QUANTUM-01-SGA via\r\nProject No. 101113946 OpenSuperQPlus100. A.M. acknowledges support from the NOMIS-ISTA fellowship.","publication":"arXiv","scopus_import":"1","department":[{"_id":"JoFi"},{"_id":"GradSch"}],"date_created":"2026-05-12T13:58:18Z","related_material":{"record":[{"relation":"dissertation_contains","status":"public","id":"21863"}]},"corr_author":"1","citation":{"short":"T. Werner, E. Riyazi, S. Hawaldar, R. Sahu, G.M. Arnold, P.F.-S. Paul Falthansl-Scheinecker, J.A.S. Naranjo, D. Loi, L.N. Kapoor, M. Zemlicka, L. Qiu, A. Militaru, J.M. Fink, ArXiv (n.d.).","apa":"Werner, T., Riyazi, E., Hawaldar, S., Sahu, R., Arnold, G. M., Paul Falthansl-Scheinecker, P. F.-S., … Fink, J. M. (n.d.). Electro-optic conversion of itinerant Fock states. <i>arXiv</i>. <a href=\"https://doi.org/10.48550/arXiv.2602.00928\">https://doi.org/10.48550/arXiv.2602.00928</a>","ieee":"T. Werner <i>et al.</i>, “Electro-optic conversion of itinerant Fock states,” <i>arXiv</i>. .","chicago":"Werner, Thomas, Erfan Riyazi, Samarth Hawaldar, Rishabh Sahu, Georg M Arnold, Paul Falthansl-Scheinecker Paul Falthansl-Scheinecker, Jennifer A. Sánchez Naranjo, et al. “Electro-Optic Conversion of Itinerant Fock States.” <i>ArXiv</i>, n.d. <a href=\"https://doi.org/10.48550/arXiv.2602.00928\">https://doi.org/10.48550/arXiv.2602.00928</a>.","ista":"Werner T, Riyazi E, Hawaldar S, Sahu R, Arnold GM, Paul Falthansl-Scheinecker PF-S, Naranjo JAS, Loi D, Kapoor LN, Zemlicka M, Qiu L, Militaru A, Fink JM. Electro-optic conversion of itinerant Fock states. arXiv, <a href=\"https://doi.org/10.48550/arXiv.2602.00928\">10.48550/arXiv.2602.00928</a>.","ama":"Werner T, Riyazi E, Hawaldar S, et al. Electro-optic conversion of itinerant Fock states. <i>arXiv</i>. doi:<a href=\"https://doi.org/10.48550/arXiv.2602.00928\">10.48550/arXiv.2602.00928</a>","mla":"Werner, Thomas, et al. “Electro-Optic Conversion of Itinerant Fock States.” <i>ArXiv</i>, doi:<a href=\"https://doi.org/10.48550/arXiv.2602.00928\">10.48550/arXiv.2602.00928</a>."},"oa_version":"Preprint","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2602.00928"}],"month":"01","article_processing_charge":"No","oa":1,"year":"2026","publication_status":"draft","author":[{"last_name":"Werner","id":"1fcd8497-dba3-11ea-a45e-c6fbd715f7c7","full_name":"Werner, Thomas","orcid":"0009-0001-2346-5236","first_name":"Thomas"},{"last_name":"Riyazi","id":"53322f94-5355-11ee-ae5a-ff6f81c87d51","full_name":"Riyazi, Erfan","first_name":"Erfan"},{"last_name":"Hawaldar","id":"221708e1-1ff6-11ee-9fa6-85146607433e","full_name":"Hawaldar, Samarth","orcid":"0000-0002-1965-4309","first_name":"Samarth"},{"last_name":"Sahu","id":"47D26E34-F248-11E8-B48F-1D18A9856A87","first_name":"Rishabh","orcid":"0000-0001-6264-2162","full_name":"Sahu, Rishabh"},{"first_name":"Georg M","orcid":"0000-0003-1397-7876","full_name":"Arnold, Georg M","id":"3770C838-F248-11E8-B48F-1D18A9856A87","last_name":"Arnold"},{"last_name":"Paul Falthansl-Scheinecker","first_name":"Paul Falthansl-Scheinecker","full_name":"Paul Falthansl-Scheinecker, Paul Falthansl-Scheinecker"},{"last_name":"Naranjo","full_name":"Naranjo, Jennifer A. Sánchez","first_name":"Jennifer A. Sánchez"},{"last_name":"Loi","full_name":"Loi, Dante","first_name":"Dante"},{"last_name":"Kapoor","first_name":"Lucky N.","full_name":"Kapoor, Lucky N."},{"last_name":"Zemlicka","id":"2DCF8DE6-F248-11E8-B48F-1D18A9856A87","full_name":"Zemlicka, Martin","orcid":"0009-0005-0878-3032","first_name":"Martin"},{"first_name":"Liu","full_name":"Qiu, Liu","orcid":"0000-0003-4345-4267","id":"45e99c0d-1eb1-11eb-9b96-ed8ab2983cac","last_name":"Qiu"},{"id":"d67706f8-8eb1-11ee-ad1b-9c30dfa19e0b","first_name":"Andrei","full_name":"Militaru, Andrei","last_name":"Militaru"},{"id":"4B591CBA-F248-11E8-B48F-1D18A9856A87","full_name":"Fink, Johannes M","orcid":"0000-0001-8112-028X","first_name":"Johannes M","last_name":"Fink"}]},{"tmp":{"short":"CC BY-SA (4.0)","image":"/images/cc_by_sa.png","legal_code_url":"https://creativecommons.org/licenses/by-sa/4.0/legalcode","name":"Creative Commons Attribution-ShareAlike 4.0 International Public License (CC BY-SA 4.0)"},"doi_confirm":"1","language":[{"iso":"eng"}],"fulldoi":"https://doi.org/10.15479/AT-ISTA-22745","file":[{"content_type":"application/pdf","file_name":"2026_Michalik_David_Thesis.pdf","embargo":"2027-08-26","file_id":"22763","embargo_to":"open_access","access_level":"closed","creator":"cchlebak","relation":"main_file","date_created":"2026-08-26T08:46:02Z","date_updated":"2026-08-26T08:46:02Z","checksum":"cd80d2076a5155ab6a12ec0b05adbee5","file_size":13624837},{"file_name":"2026_Michalik_David_Thesis.docx","content_type":"application/vnd.openxmlformats-officedocument.wordprocessingml.document","file_id":"22764","access_level":"closed","creator":"cchlebak","relation":"source_file","date_created":"2026-08-26T08:46:35Z","date_updated":"2026-08-26T08:46:35Z","checksum":"16ae6cd206ba0eb04ce8a7198042f24f","file_size":20499216}],"date_published":"2026-08-21T00:00:00Z","day":"21","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"Institute of Science and Technology Austria","doi":"10.15479/AT-ISTA-22745","status":"public","_id":"22745","type":"dissertation","project":[{"grant_number":"F8003","name":"RNAdeco: decorating RNA for a purpose/ P03- Roles of A-to-I editing in dsRNA recognition","_id":"8dc144d4-16d5-11f0-9cad-9d9e86aea1f7"}],"license":"https://creativecommons.org/licenses/by-sa/4.0/","date_updated":"2026-09-14T06:54:50Z","page":"182","title":"Mechanistic insights into MDA5 selectivity and regulation","file_date_updated":"2026-08-26T08:46:35Z","year":"2026","degree_awarded":"PhD","article_processing_charge":"No","month":"08","oa_version":"Published Version","author":[{"id":"B9577E20-AA38-11E9-AC9A-0930E6697425","first_name":"David","full_name":"Michalik, David","last_name":"Michalik"}],"publication_status":"published","ddc":["572"],"acknowledgement":"This research was supported by the Scientific Service Units of Institute of Science and\r\nTechnology Austria through resources provided by the Lab Support Facility and Electron\r\nMicroscopy Facility at ISTA. Monoclonal Antibody Facility at Max Perutz laboratories are\r\nacknowledged for raising anti-pSer1022 MDA5 antibody. Proteomics core facility CEITEC MUNI\r\nBrno, namely David Pospíšil, are acknowledged for their help with measuring MS data as well\r\nas help with interpreting them and the introduction into MS data analysis. CIISB, Instruct-CZ\r\nCentre of Instruct-ERIC EU consortium, funded by MEYS CR infrastructure project LM2023042,\r\nis gratefully acknowledged for the financial support of the measurements at the CEITEC\r\nProteomics Core Facility. Computational resources were provided by the e-INFRA CZ project\r\n(ID:90254), supported by MEYS CR.\r\nThis work was supported by the Austrian Science Fund (FWF) grant F8003-B RNA-DECO:\r\nDecorating RNA for a purpose (10.55776/F80).","supervisor":[{"last_name":"Bernecky","first_name":"Carrie A","full_name":"Bernecky, Carrie A","orcid":"0000-0003-0893-7036","id":"2CB9DFE2-F248-11E8-B48F-1D18A9856A87"}],"publication_identifier":{"issn":["2663-337X"]},"OA_place":"publisher","citation":{"ieee":"D. Michalik, “Mechanistic insights into MDA5 selectivity and regulation,” Institute of Science and Technology Austria, 2026.","apa":"Michalik, D. (2026). <i>Mechanistic insights into MDA5 selectivity and regulation</i>. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT-ISTA-22745\">https://doi.org/10.15479/AT-ISTA-22745</a>","short":"D. Michalik, Mechanistic Insights into MDA5 Selectivity and Regulation, Institute of Science and Technology Austria, 2026.","chicago":"Michalik, David. “Mechanistic Insights into MDA5 Selectivity and Regulation.” Institute of Science and Technology Austria, 2026. <a href=\"https://doi.org/10.15479/AT-ISTA-22745\">https://doi.org/10.15479/AT-ISTA-22745</a>.","ista":"Michalik D. 2026. Mechanistic insights into MDA5 selectivity and regulation. Institute of Science and Technology Austria.","mla":"Michalik, David. <i>Mechanistic Insights into MDA5 Selectivity and Regulation</i>. Institute of Science and Technology Austria, 2026, doi:<a href=\"https://doi.org/10.15479/AT-ISTA-22745\">10.15479/AT-ISTA-22745</a>.","ama":"Michalik D. Mechanistic insights into MDA5 selectivity and regulation. 2026. doi:<a href=\"https://doi.org/10.15479/AT-ISTA-22745\">10.15479/AT-ISTA-22745</a>"},"corr_author":"1","has_accepted_license":"1","alternative_title":["ISTA Thesis"],"date_created":"2026-08-21T09:29:34Z","department":[{"_id":"CaBe"},{"_id":"GradSch"}]},{"publication":"Nature Communications","researchdata_availability":"yes","das_tickbox":"1","date_created":"2026-09-13T22:01:51Z","scopus_import":"1","department":[{"_id":"MiSi"}],"has_accepted_license":"1","citation":{"short":"L. Strauss, S. Lembo, S.F. Gérard, M. Siggel, D. Cheng, M. Bergert, S.K. Foster, J. Vermeil, M. Toro-Nahuelpan, L.M. Fischer, Q. Yu, E. Sitarska, C.J. Chan, J. Kosinski, M. Piel, O. Du Roure, J. Heuvingh, J. Mahamid, A. Diz-Muñoz, Nature Communications 17 (2026).","ieee":"L. Strauss <i>et al.</i>, “The membrane-to-cortex distance regulates mDia1 activity to control cortical mechanics,” <i>Nature Communications</i>, vol. 17. Springer Nature, 2026.","apa":"Strauss, L., Lembo, S., Gérard, S. F., Siggel, M., Cheng, D., Bergert, M., … Diz-Muñoz, A. (2026). The membrane-to-cortex distance regulates mDia1 activity to control cortical mechanics. <i>Nature Communications</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41467-026-72845-3\">https://doi.org/10.1038/s41467-026-72845-3</a>","chicago":"Strauss, Léanne, Sergio Lembo, Samuel F. Gérard, Marc Siggel, Dorothy Cheng, Martin Bergert, Sarah K. Foster, et al. “The Membrane-to-Cortex Distance Regulates MDia1 Activity to Control Cortical Mechanics.” <i>Nature Communications</i>. Springer Nature, 2026. <a href=\"https://doi.org/10.1038/s41467-026-72845-3\">https://doi.org/10.1038/s41467-026-72845-3</a>.","ista":"Strauss L, Lembo S, Gérard SF, Siggel M, Cheng D, Bergert M, Foster SK, Vermeil J, Toro-Nahuelpan M, Fischer LM, Yu Q, Sitarska E, Chan CJ, Kosinski J, Piel M, Du Roure O, Heuvingh J, Mahamid J, Diz-Muñoz A. 2026. The membrane-to-cortex distance regulates mDia1 activity to control cortical mechanics. Nature Communications. 17, 9501.","mla":"Strauss, Léanne, et al. “The Membrane-to-Cortex Distance Regulates MDia1 Activity to Control Cortical Mechanics.” <i>Nature Communications</i>, vol. 17, 9501, Springer Nature, 2026, doi:<a href=\"https://doi.org/10.1038/s41467-026-72845-3\">10.1038/s41467-026-72845-3</a>.","ama":"Strauss L, Lembo S, Gérard SF, et al. The membrane-to-cortex distance regulates mDia1 activity to control cortical mechanics. <i>Nature Communications</i>. 2026;17. doi:<a href=\"https://doi.org/10.1038/s41467-026-72845-3\">10.1038/s41467-026-72845-3</a>"},"corr_author":"1","OA_place":"publisher","quality_controlled":"1","OA_type":"gold","PlanS_conform":"1","publication_identifier":{"eissn":["2041-1723"]},"volume":17,"article_number":"9501","dataavailabilitystatement":"The dataset for the analysis of cortical actin and p-myosin in fixed cells, as well as actin and myosin−2 in live cells can be found together with the corresponding Fiji macro for immunofluorescence quantification in the Biostudies database (accession number S-BIAD2611).\r\n\r\nAll raw frames, tilt series, metadata, tomograms and segmentations generated for this work are deposited in the Electron Microscopy Public Image Archive (EMPIAR)118 under accession code EMPIAR-13326. A representative tomogram associated with this entry is available in the Electron Microscopy Data Bank (EMDB)119 under entry EMD-56367.\r\n\r\nThe experimental imaging data for the filopodia analysis, the used Spotiflow model with corresponding training data and example datasets are available in the BioStudies database (accession number S-BIAD2611).\r\n\r\nRaw numbers for plots presented in this paper as well as western blot images are available in the Source Data. All other data and unique reagents that support this study are available from the corresponding authors upon request. Source data are provided in this paper. Source data are provided with this paper.\r\nThe code used for cortex analysis from binary segmentations obtained during cryo-ET data processing is available on GitHub with the following link: https://github.com/MahamidLab/actin_cortex_analysis/tree/revision.\r\n\r\nThe Napari plugin for reviewing and manually correct spot detections used in the filopodia analysis is available at GitHub with the following link: https://github.com/diz-lab/filospot.","acknowledgement":"We thank Jan Ellenberg (SciLifeLab), Stephan Grill (MPI-CBG), Anna Erzberger (EMBL) and members of the Diz-Muñoz lab for a critical reading of the manuscript. We thank Estela Sosa Osorio (EMBL) and Gisela Juliachs Torroella (EMBL) for manual curation of actin segmentation in cryo-electron tomograms, and Evgenia Zagoriy (EMBL) and Mukthi Ammai Sridharan Iyer (EMBL) for the visual inspection of actin branching points in cryo-electron tomograms. We thank Anne-Cecyle Reyman (IGBMC) and her team for extended discussion and inspiring experiments. We thank Ruben Tesoro Moreno (EMBL) for Alphafold predictions. We thank Jan Faix (Hannover Medical School) for the mDia1 constructs and Jamie Hackett (EMBL Rome) for the Piggybac vectors. We thank Sarah Kaspar in the EMBL Data Science Centre for help with statistical methods. We thank the EMBL Flow Cytometry Core Facility (especially Daniel Gimenes), the EMBL advanced light microscopy facility (especially Marko Lampe and Beate Neumann for microscope support, and Christian Tischer for help with image analysis), EMBL IT (especially Thomas Hoffmann), and the EMBL cryo-EM platform for support and advice. We thank Albert Dominguez Mantes (EPFL) for helpful discussions about Spotiflow. We acknowledge the financial support of the European Molecular Biology Laboratory (EMBL) to J.M. and A.D-M., the Deutsche Forschungsgemeinschaft (DFG) grant DI 2205/3-1, the Human Frontiers Science Program (HFSP) grant RGY0073/2018 and ERC grant 101124221 (MitoMeChAnics) to A.D-M., the Boehringer Ingelheim Fonds PhD fellowship and the Croucher Scholarship for Doctoral Study to D.C., the EMBL interdisciplinary Postdoc (EIPOD) programme under Marie Curie Cofund Actions MSCA-COFUND-FP to M.S. and M.T-N., the EMBO fellowship to S.F.G., the French Agence Nationale de la Recherche (ANR-21-CE13-0048) to O.D.R. and J.H.; This work is partially funded by the European Union. Views and opinions expressed are however those of the author(s) only and do not necessarily reflect those of the European Union or the European Research Council Executive Agency. Neither the European Union nor the granting authority can be held responsible for them. Open Access funding enabled and organized by Projekt DEAL.","ddc":["570"],"author":[{"full_name":"Strauss, Léanne","first_name":"Léanne","last_name":"Strauss"},{"first_name":"Sergio","orcid":"0000-0002-2253-8771","full_name":"Lembo, Sergio","id":"d993a7b2-292f-11ed-aaac-fb045a912e31","last_name":"Lembo"},{"first_name":"Samuel F.","full_name":"Gérard, Samuel F.","last_name":"Gérard"},{"full_name":"Siggel, Marc","first_name":"Marc","last_name":"Siggel"},{"last_name":"Cheng","first_name":"Dorothy","full_name":"Cheng, Dorothy"},{"last_name":"Bergert","first_name":"Martin","full_name":"Bergert, Martin"},{"first_name":"Sarah K.","full_name":"Foster, Sarah K.","last_name":"Foster"},{"last_name":"Vermeil","first_name":"Joseph","full_name":"Vermeil, Joseph"},{"last_name":"Toro-Nahuelpan","full_name":"Toro-Nahuelpan, Mauricio","first_name":"Mauricio"},{"full_name":"Fischer, Lena M.","first_name":"Lena M.","last_name":"Fischer"},{"first_name":"Qin","full_name":"Yu, Qin","last_name":"Yu"},{"last_name":"Sitarska","full_name":"Sitarska, Ewa","first_name":"Ewa"},{"full_name":"Chan, Chii Jou","first_name":"Chii Jou","last_name":"Chan"},{"full_name":"Kosinski, Jan","first_name":"Jan","last_name":"Kosinski"},{"first_name":"Matthieu","full_name":"Piel, Matthieu","last_name":"Piel"},{"last_name":"Du Roure","full_name":"Du Roure, Olivia","first_name":"Olivia"},{"full_name":"Heuvingh, Julien","first_name":"Julien","last_name":"Heuvingh"},{"first_name":"Julia","full_name":"Mahamid, Julia","last_name":"Mahamid"},{"last_name":"Diz-Muñoz","full_name":"Diz-Muñoz, Alba","first_name":"Alba"}],"publication_status":"published","article_type":"original","oa_version":"Published Version","intvolume":"        17","month":"09","oa":1,"year":"2026","article_processing_charge":"Yes (via OA deal)","abstract":[{"text":"The shape of animal cells is controlled by their surface, which comprises the cell cortex, a peripheral actin network, tethered to the plasma membrane by membrane-to-cortex attachment proteins. Changes in cortical components have long been considered to dominate the regulation of forces and mechanical properties at the cell surface and drive morphogenesis. Here, we show that the coupling of the cortex to the membrane is also key for the regulation of its mechanical properties. By combining molecular engineering with biophysical approaches and in-cell cryo-electron tomography we describe the cell surface with nanometer-resolution and link its organization to cell-scale mechanics. We find that membrane-to-cortex attachment proteins can physically draw the cortex closer to the membrane, in a density and length-dependent manner. This reduction of the membrane-to-cortex distance controls the activity of the formin mDia1, leading to a reduction in cortical tension. Our study thus defines a novel mechanism whereby the membrane-to-cortex distance is a functional geometrical parameter that regulates cell surface properties.","lang":"eng"}],"file_date_updated":"2026-09-15T12:51:36Z","title":"The membrane-to-cortex distance regulates mDia1 activity to control cortical mechanics","date_updated":"2026-09-15T12:58:06Z","pmid":1,"status":"public","_id":"22911","type":"journal_article","doi":"10.1038/s41467-026-72845-3","DOAJ_listed":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"Springer Nature","day":"04","date_published":"2026-09-04T00:00:00Z","language":[{"iso":"eng"}],"fulldoi":"https://doi.org/10.1038/s41467-026-72845-3","file":[{"date_updated":"2026-09-15T12:51:36Z","checksum":"adc0d16fcb2a65e1a5913481700fa19f","file_size":3154967,"success":1,"creator":"dernst","relation":"main_file","date_created":"2026-09-15T12:51:36Z","file_id":"22932","access_level":"open_access","file_name":"2026_NatureComm_Strauss.pdf","content_type":"application/pdf"}],"external_id":{"pmid":["42697882"]},"supplementarymaterial":"yes","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"}},{"publication_status":"published","article_type":"original","author":[{"last_name":"Charinti","full_name":"Charinti, Giousef Alexandros","first_name":"Giousef Alexandros","id":"7f7cc04c-074c-11ed-af92-eb16afd85c75"},{"last_name":"Davin","full_name":"Davin, Andrea","first_name":"Andrea"},{"last_name":"Polesello","full_name":"Polesello, Andrea","first_name":"Andrea","id":"74c777f4-32da-11ee-b498-874db0835561"},{"last_name":"Muller","first_name":"Caroline J","full_name":"Muller, Caroline J","orcid":"0000-0001-5836-5350","id":"f978ccb0-3f7f-11eb-b193-b0e2bd13182b"},{"first_name":"Claudia","full_name":"Pasquero, Claudia","last_name":"Pasquero"}],"ddc":["550"],"article_processing_charge":"Yes","year":"2026","oa":1,"oa_version":"Published Version","issue":"17","intvolume":"        53","month":"09","has_accepted_license":"1","corr_author":"1","citation":{"short":"G.A. Charinti, A. Davin, A. Polesello, C.J. Muller, C. Pasquero, Geophysical Research Letters 53 (2026).","ieee":"G. A. Charinti, A. Davin, A. Polesello, C. J. Muller, and C. Pasquero, “Impact of upper-level warming on tropical cyclone intensity,” <i>Geophysical Research Letters</i>, vol. 53, no. 17. Wiley, 2026.","apa":"Charinti, G. A., Davin, A., Polesello, A., Muller, C. J., &#38; Pasquero, C. (2026). Impact of upper-level warming on tropical cyclone intensity. <i>Geophysical Research Letters</i>. Wiley. <a href=\"https://doi.org/10.1029/2025GL121307\">https://doi.org/10.1029/2025GL121307</a>","chicago":"Charinti, Giousef Alexandros, Andrea Davin, Andrea Polesello, Caroline J Muller, and Claudia Pasquero. “Impact of Upper-Level Warming on Tropical Cyclone Intensity.” <i>Geophysical Research Letters</i>. Wiley, 2026. <a href=\"https://doi.org/10.1029/2025GL121307\">https://doi.org/10.1029/2025GL121307</a>.","ista":"Charinti GA, Davin A, Polesello A, Muller CJ, Pasquero C. 2026. Impact of upper-level warming on tropical cyclone intensity. Geophysical Research Letters. 53(17), e2025GL121307.","ama":"Charinti GA, Davin A, Polesello A, Muller CJ, Pasquero C. Impact of upper-level warming on tropical cyclone intensity. <i>Geophysical Research Letters</i>. 2026;53(17). doi:<a href=\"https://doi.org/10.1029/2025GL121307\">10.1029/2025GL121307</a>","mla":"Charinti, Giousef Alexandros, et al. “Impact of Upper-Level Warming on Tropical Cyclone Intensity.” <i>Geophysical Research Letters</i>, vol. 53, no. 17, e2025GL121307, Wiley, 2026, doi:<a href=\"https://doi.org/10.1029/2025GL121307\">10.1029/2025GL121307</a>."},"researchdata_availability":"yes","publication":"Geophysical Research Letters","department":[{"_id":"CaMu"},{"_id":"GradSch"}],"scopus_import":"1","das_tickbox":"1","date_created":"2026-09-13T22:01:51Z","acknowledgement":"GAC and CM acknowledge funding from the European Research Council (ERC)under the European Union's Horizon 2020 research and innovation program (Project CLUSTER, Grant Agreement No.805041). AD and CP acknowledge support by the National Recovery and Resilience Plan project TeRABIT (Terabit network for Research and Academic Big data in Italy—IR0000022—PNRR Missione 4,Componente 2, Investimento 3.1 CUPI53C21000370006) in the frame of the European Union ‐ NextGenerationEUfunding. Open Access funding provided by Institute of Science and TechnologyAustria/KEMÖ","dataavailabilitystatement":"The post‐processed simulation data and the analysis scripts are available on Figshare https://doi.org/10.6084/m9.figshare.30933764 (Charinti et al., 2025).","article_number":"e2025GL121307","OA_type":"gold","PlanS_conform":"1","OA_place":"publisher","quality_controlled":"1","volume":53,"publication_identifier":{"issn":["0094-8276"],"eissn":["1944-8007"]},"ec_funded":1,"file":[{"date_created":"2026-09-15T12:34:00Z","relation":"main_file","success":1,"creator":"dernst","file_size":1277378,"checksum":"8d1c470e4c2cb43bf3220f34a0d3e10c","date_updated":"2026-09-15T12:34:00Z","file_name":"2026_GeophysicalResearchLetters_Charinti.pdf","content_type":"application/pdf","access_level":"open_access","file_id":"22931"}],"fulldoi":"https://doi.org/10.1029/2025GL121307","language":[{"iso":"eng"}],"date_published":"2026-09-16T00:00:00Z","day":"16","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"supplementarymaterial":"yes","date_updated":"2026-09-15T12:38:32Z","file_date_updated":"2026-09-15T12:34:00Z","abstract":[{"text":"Deep convection from tropical cyclones (TCs) can reach the height of the tropopause and as such an interaction between the upper troposphere and lower stratosphere is likely to occur. Such interactions have been reported in both numerical and observational studies, mainly showing that subsidence from the stratosphere into the eye of an intensifying storm leads to a high-level warm core. However, the effect of this upper-level warming on the intensity of the TCs is not yet well understood. In this study, we show that subsiding air from the stratosphere beyond subsidence in the eye is the reason for the upper-level warming in idealized simulations. We further show that it is possible to quantify the effects of the upper-level warming on the potential intensity of the TC. Finally, we conclude that overshooting convection into the stratosphere causes the observed subsidence, as both become more pronounced with increasing sea-surface temperatures (SST).","lang":"eng"}],"title":"Impact of upper-level warming on tropical cyclone intensity","doi":"10.1029/2025GL121307","publisher":"Wiley","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","DOAJ_listed":"1","type":"journal_article","project":[{"call_identifier":"H2020","name":"Organization of CLoUdS, and implications of Tropical  cyclones and for the Energetics of the tropics, in current and waRming climate","_id":"629205d8-2b32-11ec-9570-e1356ff73576","grant_number":"805041"}],"_id":"22912","status":"public"},{"month":"03","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2505.04539"}],"intvolume":"        40","oa_version":"Preprint","issue":"43","oa":1,"year":"2026","article_processing_charge":"No","author":[{"id":"02d96aae-000e-11ec-b801-cadd0a5eefbb","first_name":"Ali","full_name":"Asadi, Ali","last_name":"Asadi"},{"first_name":"Krishnendu","full_name":"Chatterjee, Krishnendu","orcid":"0000-0002-4561-241X","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","last_name":"Chatterjee"},{"id":"103b4fa0-896a-11ed-bdf8-87b697bef40d","full_name":"Kafshdar Goharshadi, Ehsan","orcid":"0000-0002-8595-0587","first_name":"Ehsan","last_name":"Kafshdar Goharshadi"},{"last_name":"Karrabi","id":"67638922-f394-11eb-9cf6-f20423e08757","full_name":"Karrabi, Mehrdad","orcid":"0009-0007-5253-9170","first_name":"Mehrdad"},{"last_name":"Shafiee","id":"2783031a-7378-11f0-b2d0-f17f1db2ebad","first_name":"Ali","full_name":"Shafiee, Ali"}],"publication_status":"published","ec_funded":1,"volume":40,"publication_identifier":{"eissn":["2374-3468"],"issn":["2159-5399"]},"quality_controlled":"1","arxiv":1,"OA_place":"repository","OA_type":"green","acknowledgement":"This work was supported by ERC CoG 863818 (ForMSMArt) and Austrian Science Fund (FWF) 10.55776/COE12. We also thank Hossein Zakerinia for his helpful feedback.","date_created":"2026-04-12T22:01:50Z","department":[{"_id":"KrCh"},{"_id":"GradSch"}],"scopus_import":"1","publication":"Proceedings of the 40th AAAI Conference on Artificial Intelligence","citation":{"chicago":"Asadi, Ali, Krishnendu Chatterjee, Ehsan Goharshady, Mehrdad Karrabi, and Ali Shafiee. “Qualitative Analysis of ω-Regular Objectives on Robust MDPs.” In <i>Proceedings of the 40th AAAI Conference on Artificial Intelligence</i>, 40:36137–45. Association for the Advancement of Artificial Intelligence, 2026. <a href=\"https://doi.org/10.1609/aaai.v40i43.40931\">https://doi.org/10.1609/aaai.v40i43.40931</a>.","short":"A. Asadi, K. Chatterjee, E. Goharshady, M. Karrabi, A. Shafiee, in:, Proceedings of the 40th AAAI Conference on Artificial Intelligence, Association for the Advancement of Artificial Intelligence, 2026, pp. 36137–36145.","ieee":"A. Asadi, K. Chatterjee, E. Goharshady, M. Karrabi, and A. Shafiee, “Qualitative analysis of ω-regular objectives on robust MDPs,” in <i>Proceedings of the 40th AAAI Conference on Artificial Intelligence</i>, Singapore, Singapore, 2026, vol. 40, no. 43, pp. 36137–36145.","apa":"Asadi, A., Chatterjee, K., Goharshady, E., Karrabi, M., &#38; Shafiee, A. (2026). Qualitative analysis of ω-regular objectives on robust MDPs. In <i>Proceedings of the 40th AAAI Conference on Artificial Intelligence</i> (Vol. 40, pp. 36137–36145). Singapore, Singapore: Association for the Advancement of Artificial Intelligence. <a href=\"https://doi.org/10.1609/aaai.v40i43.40931\">https://doi.org/10.1609/aaai.v40i43.40931</a>","mla":"Asadi, Ali, et al. “Qualitative Analysis of ω-Regular Objectives on Robust MDPs.” <i>Proceedings of the 40th AAAI Conference on Artificial Intelligence</i>, vol. 40, no. 43, Association for the Advancement of Artificial Intelligence, 2026, pp. 36137–45, doi:<a href=\"https://doi.org/10.1609/aaai.v40i43.40931\">10.1609/aaai.v40i43.40931</a>.","ama":"Asadi A, Chatterjee K, Goharshady E, Karrabi M, Shafiee A. Qualitative analysis of ω-regular objectives on robust MDPs. In: <i>Proceedings of the 40th AAAI Conference on Artificial Intelligence</i>. Vol 40. Association for the Advancement of Artificial Intelligence; 2026:36137-36145. doi:<a href=\"https://doi.org/10.1609/aaai.v40i43.40931\">10.1609/aaai.v40i43.40931</a>","ista":"Asadi A, Chatterjee K, Goharshady E, Karrabi M, Shafiee A. 2026. Qualitative analysis of ω-regular objectives on robust MDPs. Proceedings of the 40th AAAI Conference on Artificial Intelligence. AAAI: Conference on Artificial Intelligence vol. 40, 36137–36145."},"day":"14","date_published":"2026-03-14T00:00:00Z","external_id":{"arxiv":["2505.04539"]},"language":[{"iso":"eng"}],"fulldoi":"https://doi.org/10.1609/aaai.v40i43.40931","status":"public","_id":"21717","type":"conference","project":[{"_id":"0599E47C-7A3F-11EA-A408-12923DDC885E","call_identifier":"H2020","name":"Formal Methods for Stochastic Models: Algorithms and Applications","grant_number":"863818"},{"name":"Bilateral Artificial Intelligence (Chatterjee)","_id":"4029cfc7-b034-11f1-9e55-88ab2ff3b6ee","grant_number":"COE12"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"Association for the Advancement of Artificial Intelligence","doi":"10.1609/aaai.v40i43.40931","title":"Qualitative analysis of ω-regular objectives on robust MDPs","abstract":[{"text":"Robust Markov Decision Processes (RMDPs) generalize classical MDPs that consider uncertainties in transition probabilities by defining a set of possible transition functions. An objective is a set of runs (or infinite trajectories) of the RMDP, and the value for an objective is the maximal probability that the agent can guarantee against the adversarial environment. We consider (a) reachability objectives, where given a target set of states, the goal is to eventually arrive at one of them; and (b) parity objectives, which are a canonical representation for ω-regular objectives. The qualitative analysis problem asks whether the objective can be ensured with probability 1. In this work, we study the qualitative problem for reachability and parity objectives on RMDPs without making any assumption over the structures of the RMDPs, e.g., unichain or aperiodic. Our contributions are twofold. We first present efficient algorithms with oracle access to uncertainty sets that solve qualitative problems of reachability and parity objectives. We then report experimental results demonstrating the effectiveness of our oracle-based approach on classical RMDP examples from the literature scaling up to thousands of states.","lang":"eng"}],"conference":{"end_date":"2026-01-27","name":"AAAI: Conference on Artificial Intelligence","start_date":"2026-01-20","location":"Singapore, Singapore"},"page":"36137-36145","date_updated":"2026-09-16T07:27:43Z"},{"author":[{"last_name":"Asadi","first_name":"Ali","full_name":"Asadi, Ali","id":"02d96aae-000e-11ec-b801-cadd0a5eefbb"},{"last_name":"Chatterjee","first_name":"Krishnendu","orcid":"0000-0002-4561-241X","full_name":"Chatterjee, Krishnendu","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Lurie, David","first_name":"David","id":"579a6c20-34cf-11f1-acbd-8c2f19cdb4da","last_name":"Lurie"},{"first_name":"Raimundo J","full_name":"Saona Urmeneta, Raimundo J","orcid":"0000-0001-5103-038X","id":"BD1DF4C4-D767-11E9-B658-BC13E6697425","last_name":"Saona Urmeneta"}],"publication_status":"published","oa":1,"year":"2026","article_processing_charge":"No","oa_version":"Preprint","intvolume":"        40","issue":"43","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2511.13134"}],"month":"03","citation":{"apa":"Asadi, A., Chatterjee, K., Lurie, D., &#38; Saona Urmeneta, R. J. (2026). Revealing POMDPs: Qualitative and quantitative analysis for parity objectives. In <i>Proceedings of the AAAI Conference on Artificial Intelligence</i> (Vol. 40, pp. 36146–36154). Singapore, Singapore: Association for the Advancement of Artificial Intelligence. <a href=\"https://doi.org/10.1609/aaai.v40i43.40932\">https://doi.org/10.1609/aaai.v40i43.40932</a>","ieee":"A. Asadi, K. Chatterjee, D. Lurie, and R. J. Saona Urmeneta, “Revealing POMDPs: Qualitative and quantitative analysis for parity objectives,” in <i>Proceedings of the AAAI Conference on Artificial Intelligence</i>, Singapore, Singapore, 2026, vol. 40, no. 43, pp. 36146–36154.","short":"A. Asadi, K. Chatterjee, D. Lurie, R.J. Saona Urmeneta, in:, Proceedings of the AAAI Conference on Artificial Intelligence, Association for the Advancement of Artificial Intelligence, 2026, pp. 36146–36154.","chicago":"Asadi, Ali, Krishnendu Chatterjee, David Lurie, and Raimundo J Saona Urmeneta. “Revealing POMDPs: Qualitative and Quantitative Analysis for Parity Objectives.” In <i>Proceedings of the AAAI Conference on Artificial Intelligence</i>, 40:36146–54. Association for the Advancement of Artificial Intelligence, 2026. <a href=\"https://doi.org/10.1609/aaai.v40i43.40932\">https://doi.org/10.1609/aaai.v40i43.40932</a>.","ista":"Asadi A, Chatterjee K, Lurie D, Saona Urmeneta RJ. 2026. Revealing POMDPs: Qualitative and quantitative analysis for parity objectives. Proceedings of the AAAI Conference on Artificial Intelligence. AAAI: Conference on Artificial Intelligence vol. 40, 36146–36154.","ama":"Asadi A, Chatterjee K, Lurie D, Saona Urmeneta RJ. Revealing POMDPs: Qualitative and quantitative analysis for parity objectives. In: <i>Proceedings of the AAAI Conference on Artificial Intelligence</i>. Vol 40. Association for the Advancement of Artificial Intelligence; 2026:36146-36154. doi:<a href=\"https://doi.org/10.1609/aaai.v40i43.40932\">10.1609/aaai.v40i43.40932</a>","mla":"Asadi, Ali, et al. “Revealing POMDPs: Qualitative and Quantitative Analysis for Parity Objectives.” <i>Proceedings of the AAAI Conference on Artificial Intelligence</i>, vol. 40, no. 43, Association for the Advancement of Artificial Intelligence, 2026, pp. 36146–54, doi:<a href=\"https://doi.org/10.1609/aaai.v40i43.40932\">10.1609/aaai.v40i43.40932</a>."},"corr_author":"1","publication":"Proceedings of the AAAI Conference on Artificial Intelligence","date_created":"2026-04-12T22:01:52Z","scopus_import":"1","department":[{"_id":"KrCh"}],"acknowledgement":"This work was partially supported by the ANRT under the French CIFRE Ph.D program in collaboration between NyxAir and Paris-Dauphine University (Contract: CIFRE N° 2022/0513), by the French Agence Nationale de la Recherche (ANR) under reference ANR-21-CE40-\r\n0020 (CONVERGENCE project), by Austrian Science Fund (FWF) 10.55776/COE12, and by the ERC CoG 863818 (ForM-SMArt) grant.","arxiv":1,"OA_place":"repository","quality_controlled":"1","OA_type":"green","ec_funded":1,"publication_identifier":{"eissn":["2374-3468"],"issn":["2159-5399"]},"volume":40,"language":[{"iso":"eng"}],"fulldoi":"https://doi.org/10.1609/aaai.v40i43.40932","external_id":{"arxiv":["2511.13134"]},"date_published":"2026-03-14T00:00:00Z","day":"14","page":"36146-36154","date_updated":"2026-09-16T07:28:33Z","abstract":[{"text":"Partially observable Markov decision processes (POMDPs) are a central model for uncertainty in sequential decision making. The most basic objective is the reachability objective, where a target set must be eventually visited, and the more general parity objectives can model all omega-regular specifications. For such objectives, the computational analysis problems are the following: (a) qualitative analysis that asks whether the objective can be satisfied with probability 1 (almost-sure winning) or probability arbitrarily close to 1 (limit-sure winning); and (b) quantitative analysis that asks for the approximation of the optimal probability of satisfying the objective. For general POMDPs, almost-sure analysis for reachability objectives is EXPTIME-complete, but limit-sure and quantitative analyses for reachability objectives are undecidable; almost-sure, limit-sure, and quantitative analyses for parity objectives are all undecidable. A special class of POMDPs, called revealing POMDPs, has been studied recently in several works, and for this subclass the almost-sure analysis for parity objectives was shown to be EXPTIME-complete. In this work, we show that for revealing POMDPs the limit-sure analysis for parity objectives is EXPTIME-complete, and even the quantitative analysis for parity objectives can be achieved in EXPTIME.","lang":"eng"}],"conference":{"end_date":"2026-01-27","start_date":"2026-01-20","location":"Singapore, Singapore","name":"AAAI: Conference on Artificial Intelligence"},"title":"Revealing POMDPs: Qualitative and quantitative analysis for parity objectives","doi":"10.1609/aaai.v40i43.40932","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"Association for the Advancement of Artificial Intelligence","status":"public","_id":"21722","project":[{"grant_number":"863818","_id":"0599E47C-7A3F-11EA-A408-12923DDC885E","call_identifier":"H2020","name":"Formal Methods for Stochastic Models: Algorithms and Applications"},{"_id":"4029cfc7-b034-11f1-9e55-88ab2ff3b6ee","name":"Bilateral Artificial Intelligence (Chatterjee)","grant_number":"COE12"}],"type":"conference"},{"file_date_updated":"2026-05-04T12:20:10Z","abstract":[{"lang":"eng","text":"As vertebrates transitioned from water to land, locomotion shifted from undulatory swimming to limb-based movement. How spinal circuits and their cell types evolved to support this transition remains unclear. We leverage frog metamorphosis, which recapitulates this transition within a single organism, to define how spinal circuits generate aquatic versus terrestrial motor patterns. At swim stages, spinal architecture is uniform, with a transcriptionally and anatomically homogeneous motor and interneurons. As limbs develop and their movement complexifies, spinal circuits expand in neuron number and subtype diversity. This expansion is most pronounced for V1 inhibitory neurons, which increase ∼70-fold and diversify into transcriptionally distinct subtypes. Disrupting transcription factors defining emerging motor and V1 populations reveals molecular segregation between swim and limb circuits, highlighting the role of subtype diversity in motor coordination. A multifold increase in inhibitory neuron diversity thus underlies the tail-to-limb locomotor transition, providing a framework for spinal circuit adaptation during vertebrate evolution."}],"title":"Multifold increase in spinal inhibitory cell types with emergence of limb movement","date_updated":"2026-09-16T07:33:54Z","pmid":1,"project":[{"name":"Development and Evolution of Tetrapod Motor Circuits","_id":"ebb66355-77a9-11ec-83b8-b8ac210a4dae","grant_number":"101041551"},{"grant_number":"F7814","_id":"8da85f50-16d5-11f0-9cad-eab8b0ff6c9e","name":"Stem Cell Modulation in Neural Development and Regeneration/ P14-Swim-to-limb transition: cell type to connection diversity"},{"grant_number":"CZI01","_id":"c08e9ad1-5a5b-11eb-8a69-9d1cf3b07473","name":"Tools for automation and feedback microscopy"},{"grant_number":"FTI21-D-046","name":"Development of V1 interneuron diversity during swim-to-walk transition of Xenopus metamorphosis","_id":"bd73af52-d553-11ed-ba76-912049f0ac7a"},{"grant_number":"COE16","_id":"cf428362-b037-11f1-b015-8277a8a2f63d","name":"Neuronal circuits in health and disease (Sweeney)"}],"type":"journal_article","_id":"21746","status":"public","doi":"10.1016/j.celrep.2026.117227","publisher":"Elsevier","DOAJ_listed":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_published":"2026-04-28T00:00:00Z","day":"28","fulldoi":"https://doi.org/10.1016/j.celrep.2026.117227","file":[{"date_updated":"2026-05-04T12:20:10Z","checksum":"0d26cdb5b8d8dec3a911d8261a65cdef","file_size":14925958,"success":1,"creator":"dernst","relation":"main_file","date_created":"2026-05-04T12:20:10Z","file_id":"21795","access_level":"open_access","content_type":"application/pdf","file_name":"2026_CellReports_Vijatovic.pdf"}],"language":[{"iso":"eng"}],"external_id":{"pmid":["41964955 "]},"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"publication":"Cell Reports","department":[{"_id":"LoSw"},{"_id":"GradSch"},{"_id":"TiVo"},{"_id":"Bio"},{"_id":"NiBa"}],"scopus_import":"1","date_created":"2026-04-19T22:07:43Z","related_material":{"record":[{"id":"22667","status":"public","relation":"dissertation_contains"}]},"has_accepted_license":"1","acknowledged_ssus":[{"_id":"Bio"},{"_id":"LifeSc"}],"corr_author":"1","citation":{"short":"D. Vijatovic, F.A. Toma, Y. Ignatyev, Z.P. Harrington, C.M. Sommer, R. Hauschild, M.G. Smits, M. Dalla Vecchia, A.J. Trevisan, P. Chapman, M. Julseth, S. Brenner-Morton, M.I. Gabitto, J.S. Dasen, J.B. Bikoff, L.B. Sweeney, Cell Reports 45 (2026).","apa":"Vijatovic, D., Toma, F. A., Ignatyev, Y., Harrington, Z. P., Sommer, C. M., Hauschild, R., … Sweeney, L. B. (2026). Multifold increase in spinal inhibitory cell types with emergence of limb movement. <i>Cell Reports</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.celrep.2026.117227\">https://doi.org/10.1016/j.celrep.2026.117227</a>","ieee":"D. Vijatovic <i>et al.</i>, “Multifold increase in spinal inhibitory cell types with emergence of limb movement,” <i>Cell Reports</i>, vol. 45, no. 4. Elsevier, 2026.","chicago":"Vijatovic, David, Florina Alexandra  Toma, Y Ignatyev, Zoe P Harrington, Christoph M Sommer, Robert Hauschild, Matthijs Geert Smits, et al. “Multifold Increase in Spinal Inhibitory Cell Types with Emergence of Limb Movement.” <i>Cell Reports</i>. Elsevier, 2026. <a href=\"https://doi.org/10.1016/j.celrep.2026.117227\">https://doi.org/10.1016/j.celrep.2026.117227</a>.","ista":"Vijatovic D, Toma FA, Ignatyev Y, Harrington ZP, Sommer CM, Hauschild R, Smits MG, Dalla Vecchia M, Trevisan AJ, Chapman P, Julseth M, Brenner-Morton S, Gabitto MI, Dasen JS, Bikoff JB, Sweeney LB. 2026. Multifold increase in spinal inhibitory cell types with emergence of limb movement. Cell Reports. 45(4), 117227.","ama":"Vijatovic D, Toma FA, Ignatyev Y, et al. Multifold increase in spinal inhibitory cell types with emergence of limb movement. <i>Cell Reports</i>. 2026;45(4). doi:<a href=\"https://doi.org/10.1016/j.celrep.2026.117227\">10.1016/j.celrep.2026.117227</a>","mla":"Vijatovic, David, et al. “Multifold Increase in Spinal Inhibitory Cell Types with Emergence of Limb Movement.” <i>Cell Reports</i>, vol. 45, no. 4, 117227, Elsevier, 2026, doi:<a href=\"https://doi.org/10.1016/j.celrep.2026.117227\">10.1016/j.celrep.2026.117227</a>."},"OA_type":"gold","PlanS_conform":"1","OA_place":"publisher","quality_controlled":"1","publication_identifier":{"issn":["2639-1856"],"eissn":["2211-1247"]},"volume":45,"acknowledgement":"We would like to thank the members of the Sweeney Lab, Mario de Bono, Michael Forsthofer, Katharina Lust, and Meital Oren, for comments on the manuscript. We are also grateful to Tom Jessell and Chris Kintner for their scientific insight and mentorship during the conception of this project. It would also have not been possible without the technical support of the Aquatics and Imaging and Optics Facility support teams (ISTA). We thank Martin Estermann for preparing the initial draft of the graphical abstract and Niki Barolini for the final version. In addition, we thank our funding sources for providing the resources to do these experiments: GFF NÖ FTI Strategy Lower Austria dissertation grant FT121-D-046 (to D.V.), Horizon Europe ERC starting grant 101041551 (to Y.I., L.B.S., F.A.T., and D.V.), Special Research Program (SFB) of the Austrian Science Fund (FWF) project F7814-B (to L.B.S.), Austrian Science Fund (FWF) 10.55776/COE16 (to Y.I. and L.B.S.), NINDS 5R35NS116858 (to J.S.D.), CZI grant DAF2020-225401 (DOI) 10.37921/120055ratwvi (to R.H.), NIH grant R01NS123116 (to J.B.B.), American Lebanese Syrian Associated Charities (ALSAC) (to J.B.B.), German Academic Exchange Service (DAAD) IFI grant 57515251-91853472 (to Z.H.), and Project A.L.S. (to S.B.-M.).","article_number":"117227","ddc":["570"],"article_type":"original","publication_status":"published","author":[{"first_name":"David","orcid":"0000-0002-5494-0941","full_name":"Vijatovic, David","id":"cf391e77-ec3c-11ea-a124-d69323410b58","last_name":"Vijatovic"},{"full_name":"Toma, Florina Alexandra ","first_name":"Florina Alexandra ","id":"2f73f876-f128-11eb-9611-b96b5a30cb0e","last_name":"Toma"},{"full_name":"Ignatyev, Y","first_name":"Y","last_name":"Ignatyev"},{"first_name":"Zoe P","full_name":"Harrington, Zoe P","orcid":"0009-0008-0158-4032","id":"a8144562-32c9-11ee-b5ce-d9800628bda2","last_name":"Harrington"},{"full_name":"Sommer, Christoph M","orcid":"0000-0003-1216-9105","first_name":"Christoph M","id":"4DF26D8C-F248-11E8-B48F-1D18A9856A87","last_name":"Sommer"},{"first_name":"Robert","orcid":"0000-0001-9843-3522","full_name":"Hauschild, Robert","id":"4E01D6B4-F248-11E8-B48F-1D18A9856A87","last_name":"Hauschild"},{"last_name":"Smits","full_name":"Smits, Matthijs Geert","first_name":"Matthijs Geert","id":"7a231d52-e216-11ee-a0bb-8acd55f8f1f0"},{"full_name":"Dalla Vecchia, Marco","first_name":"Marco","id":"02a7a869-ff06-11ed-a87f-86649d6077e5","last_name":"Dalla Vecchia"},{"full_name":"Trevisan, Alexandra J.","first_name":"Alexandra J.","last_name":"Trevisan"},{"last_name":"Chapman","full_name":"Chapman, Phillip","first_name":"Phillip"},{"last_name":"Julseth","full_name":"Julseth, Mara","first_name":"Mara","id":"1cf464b2-dc7d-11ea-9b2f-f9b1aa9417d1"},{"last_name":"Brenner-Morton","full_name":"Brenner-Morton, Susan","first_name":"Susan"},{"full_name":"Gabitto, Mariano I.","first_name":"Mariano I.","last_name":"Gabitto"},{"last_name":"Dasen","full_name":"Dasen, Jeremy S.","first_name":"Jeremy S."},{"full_name":"Bikoff, Jay B.","first_name":"Jay B.","last_name":"Bikoff"},{"last_name":"Sweeney","id":"56BE8254-C4F0-11E9-8E45-0B23E6697425","full_name":"Sweeney, Lora Beatrice Jaeger","orcid":"0000-0001-9242-5601","first_name":"Lora Beatrice Jaeger"}],"oa_version":"Published Version","issue":"4","intvolume":"        45","month":"04","article_processing_charge":"Yes","year":"2026","oa":1},{"article_processing_charge":"No","oa":1,"year":"2026","oa_version":"Published Version","intvolume":"       368","month":"06","publication_status":"published","author":[{"last_name":"Kalinin","first_name":"Nikita","full_name":"Kalinin, Nikita","id":"4b14526e-14d2-11ed-ba64-c14c9553d137"},{"id":"4a893819-d954-11f0-89b1-e360bad9ccc5","full_name":"Andersson, Joel D","first_name":"Joel D","last_name":"Andersson"}],"ddc":["000"],"acknowledgement":"We thank Rasmus Pagh, Christoph Lampert and Jalaj Upadhyay for valuable\r\ncomments on an early draft. We thank Ryan Mckenna for a fruitful discussion on the experiment\r\ndesign. We thank Antti Honkela for sharing insights on learning rate scheduling and DP.\r\nNikita P. Kalinin: Funded in part by the Austrian Science Fund (FWF) [10.55776/COE12].\r\nJoel Daniel Andersson: Funded by the European Union. Views and opinions expressed are however\r\nthose of the author(s) only and do not necessarily reflect those of the European Union or the European\r\nResearch Council Executive Agency. Neither the European Union nor the granting authority can be\r\nheld responsible for them. This project has received funding from the European Research Council\r\n(ERC) under the European Union’s Horizon 2020 research and innovation programme (MoDynStruct,\r\nNo. 101019564). Additional funding by Providentia, a Data Science Distinguished Investigator grant\r\nfrom Novo Nordisk Fonden, with additional support from VILLUM Investigator grant 54451.\r\n","article_number":"2:1-2:21","OA_type":"gold","OA_place":"publisher","quality_controlled":"1","arxiv":1,"volume":368,"publication_identifier":{"isbn":["9783959774192"],"eissn":["1868-8969"]},"ec_funded":1,"alternative_title":["LIPIcs"],"has_accepted_license":"1","corr_author":"1","citation":{"mla":"Kalinin, Nikita, and Joel D. Andersson. “Learning Rate Scheduling with Matrix Factorization for Private Training.” <i>7th Symposium on Foundations of Responsible Computing</i>, vol. 368, 2:1-2:21, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2026, doi:<a href=\"https://doi.org/10.4230/LIPIcs.FORC.2026.2\">10.4230/LIPIcs.FORC.2026.2</a>.","ama":"Kalinin N, Andersson JD. Learning rate scheduling with matrix factorization for private training. In: <i>7th Symposium on Foundations of Responsible Computing</i>. Vol 368. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2026. doi:<a href=\"https://doi.org/10.4230/LIPIcs.FORC.2026.2\">10.4230/LIPIcs.FORC.2026.2</a>","ista":"Kalinin N, Andersson JD. 2026. Learning rate scheduling with matrix factorization for private training. 7th Symposium on Foundations of Responsible Computing. FORC: Symposium on Foundations of Responsible Computing, LIPIcs, vol. 368, 2:1-2:21.","chicago":"Kalinin, Nikita, and Joel D Andersson. “Learning Rate Scheduling with Matrix Factorization for Private Training.” In <i>7th Symposium on Foundations of Responsible Computing</i>, Vol. 368. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2026. <a href=\"https://doi.org/10.4230/LIPIcs.FORC.2026.2\">https://doi.org/10.4230/LIPIcs.FORC.2026.2</a>.","short":"N. Kalinin, J.D. Andersson, in:, 7th Symposium on Foundations of Responsible Computing, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2026.","ieee":"N. Kalinin and J. D. Andersson, “Learning rate scheduling with matrix factorization for private training,” in <i>7th Symposium on Foundations of Responsible Computing</i>, Cambridge, MA; United States, 2026, vol. 368.","apa":"Kalinin, N., &#38; Andersson, J. D. (2026). Learning rate scheduling with matrix factorization for private training. In <i>7th Symposium on Foundations of Responsible Computing</i> (Vol. 368). Cambridge, MA; United States: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. <a href=\"https://doi.org/10.4230/LIPIcs.FORC.2026.2\">https://doi.org/10.4230/LIPIcs.FORC.2026.2</a>"},"researchdata_availability":"no","publication":"7th Symposium on Foundations of Responsible Computing","scopus_import":"1","department":[{"_id":"ChLa"},{"_id":"GradSch"},{"_id":"MoHe"}],"das_tickbox":"0","date_created":"2026-06-28T22:01:34Z","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"supplementarymaterial":"no","keyword":["differential privacy","machine learning","matrix factorization"],"fulldoi":"https://doi.org/10.4230/LIPIcs.FORC.2026.2","file":[{"relation":"main_file","date_created":"2026-06-29T06:55:23Z","success":1,"creator":"dernst","file_size":1231914,"date_updated":"2026-06-29T06:55:23Z","checksum":"c661f016d3861a1c1b590b87a744d087","content_type":"application/pdf","file_name":"2026_LIPIcsFORC_Kalinin.pdf","access_level":"open_access","file_id":"22149"}],"language":[{"iso":"eng"}],"external_id":{"arxiv":["2511.17994"]},"date_published":"2026-06-01T00:00:00Z","day":"01","doi":"10.4230/LIPIcs.FORC.2026.2","publisher":"Schloss Dagstuhl - Leibniz-Zentrum für Informatik","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","project":[{"_id":"bd9ca328-d553-11ed-ba76-dc4f890cfe62","name":"The design and evaluation of modern fully dynamic data structures","call_identifier":"H2020","grant_number":"101019564"},{"grant_number":"COE12","_id":"d8f03aaa-b035-11f1-8588-d5147fa879e0","name":"Bilateral Artificial Intelligence (Lampert)"}],"type":"conference","status":"public","_id":"22146","date_updated":"2026-09-16T07:37:21Z","file_date_updated":"2026-06-29T06:55:23Z","conference":{"name":"FORC: Symposium on Foundations of Responsible Computing","start_date":"2026-06-03","location":"Cambridge, MA; United States","end_date":"2026-06-05"},"abstract":[{"text":"We study differentially private model training with stochastic gradient descent under learning rate scheduling and correlated noise. Although correlated noise, in particular via matrix factorizations, has been shown to improve accuracy, prior theoretical work focused primarily on the prefix-sum workload. That workload assumes a constant learning rate, whereas in practice learning rate schedules are widely used to accelerate training and improve convergence. We close this gap by deriving general upper and lower bounds for a broad class of learning rate schedules in both single- and multi-epoch settings. Building on these results, we propose a learning-rate-aware factorization that achieves improvements over prefix-sum factorizations under both MaxSE and MeanSE error metrics. Our theoretical analysis yields memory-efficient constructions suitable for practical deployment, and experiments on CIFAR-10 and IMDB datasets confirm that schedule-aware factorizations improve accuracy in private training.","lang":"eng"}],"title":"Learning rate scheduling with matrix factorization for private training"},{"corr_author":"1","citation":{"ista":"Chatterjee K, Goharshady E, Zikelic D. 2026. SuperDP: Differential privacy refutation via supermartingales. Proceedings of the ACM on Programming Languages. 10(PLDI), 218.","mla":"Chatterjee, Krishnendu, et al. “SuperDP: Differential Privacy Refutation via Supermartingales.” <i>Proceedings of the ACM on Programming Languages</i>, vol. 10, no. PLDI, 218, ACM, 2026, doi:<a href=\"https://doi.org/10.1145/3808296\">10.1145/3808296</a>.","ama":"Chatterjee K, Goharshady E, Zikelic D. SuperDP: Differential privacy refutation via supermartingales. <i>Proceedings of the ACM on Programming Languages</i>. 2026;10(PLDI). doi:<a href=\"https://doi.org/10.1145/3808296\">10.1145/3808296</a>","apa":"Chatterjee, K., Goharshady, E., &#38; Zikelic, D. (2026). SuperDP: Differential privacy refutation via supermartingales. <i>Proceedings of the ACM on Programming Languages</i>. ACM. <a href=\"https://doi.org/10.1145/3808296\">https://doi.org/10.1145/3808296</a>","ieee":"K. Chatterjee, E. Goharshady, and D. Zikelic, “SuperDP: Differential privacy refutation via supermartingales,” <i>Proceedings of the ACM on Programming Languages</i>, vol. 10, no. PLDI. ACM, 2026.","short":"K. Chatterjee, E. Goharshady, D. Zikelic, Proceedings of the ACM on Programming Languages 10 (2026).","chicago":"Chatterjee, Krishnendu, Ehsan Goharshady, and Dorde Zikelic. “SuperDP: Differential Privacy Refutation via Supermartingales.” <i>Proceedings of the ACM on Programming Languages</i>. ACM, 2026. <a href=\"https://doi.org/10.1145/3808296\">https://doi.org/10.1145/3808296</a>."},"related_material":{"record":[{"id":"22134","status":"public","relation":"research_data"}]},"has_accepted_license":"1","scopus_import":"1","department":[{"_id":"KrCh"}],"date_created":"2026-06-21T22:02:59Z","das_tickbox":"1","researchdata_availability":"yes","publication":"Proceedings of the ACM on Programming Languages","dataavailabilitystatement":"The artifact supporting the findings of this study, which includes the underlying datasets, software\r\ncode, and experiments, is publicly available in Zenodo https://zenodo.org/records/19399862.","acknowledgement":"The authors would like to thank Petr Novotný for valuable discussions that helped shape this work.\r\nThis research was supported by the Singapore Ministry of Education (MOE) Academic Research\r\nFund (AcRF) Tier 1 grant (Proposal ID: 25-SIS-SMU-009), Vienna Science and Technology Fund\r\n(WWTF), State of Lower Austria [Grant ID 10.47379/ICT25017], ERC CoG 863818 (ForM-SMArt),\r\nand Austrian Science Fund (FWF) 10.55776/COE12.","article_number":"218","publication_identifier":{"eissn":["2475-1421"]},"volume":10,"ec_funded":1,"OA_type":"gold","PlanS_conform":"1","arxiv":1,"quality_controlled":"1","OA_place":"publisher","publication_status":"published","article_type":"original","author":[{"id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","first_name":"Krishnendu","orcid":"0000-0002-4561-241X","full_name":"Chatterjee, Krishnendu","last_name":"Chatterjee"},{"last_name":"Kafshdar Goharshadi","first_name":"Ehsan","full_name":"Kafshdar Goharshadi, Ehsan","orcid":"0000-0002-8595-0587","id":"103b4fa0-896a-11ed-bdf8-87b697bef40d"},{"last_name":"Zikelic","first_name":"Dorde","full_name":"Zikelic, Dorde","orcid":"0000-0002-4681-1699","id":"294AA7A6-F248-11E8-B48F-1D18A9856A87"}],"ddc":["000"],"article_processing_charge":"Yes","year":"2026","oa":1,"month":"06","issue":"PLDI","intvolume":"        10","oa_version":"Published Version","date_updated":"2026-09-16T07:36:14Z","title":"SuperDP: Differential privacy refutation via supermartingales","file_date_updated":"2026-06-24T06:19:56Z","abstract":[{"text":"Differential privacy (DP) has established itself as one of the standards for ensuring privacy of individual data. However, reasoning about DP is a challenging and error-prone task, hence methods for formal verification and refutation of DP properties have received significant interest in recent years. In this work, we present a novel method for automated formal refutation of є-DP. Our method refutes є-DP by searching for a pair of inputs together with a non-negative function over outputs whose expected value on these two inputs differs by a significant amount. The two inputs and the non-negative function over outputs are computed simultaneously, by utilizing upper expectation supermartingales and lower expectation submartingales from probabilistic program analysis, which we leverage to introduce a sound and complete proof rule for є-DP refutation. To the best of our knowledge, our method is the first method for є-DP refutation to offer the following four desirable features: (1) it is fully automated, (2) it is applicable to stochastic mechanisms with sampling instructions from both discrete and continuous distributions, (3) it provides soundness guarantees, and (4) it provides semi-completeness guarantees. Our experiments show that our prototype tool SuperDP achieves superior performance compared to the state of the art and manages to refute є-DP for a number of challenging examples collected from the literature, including ones that were out of the reach of prior methods.","lang":"eng"}],"publisher":"ACM","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.1145/3808296","type":"journal_article","project":[{"grant_number":"863818","_id":"0599E47C-7A3F-11EA-A408-12923DDC885E","call_identifier":"H2020","name":"Formal Methods for Stochastic Models: Algorithms and Applications"},{"name":"Bilateral Artificial Intelligence (Chatterjee)","_id":"4029cfc7-b034-11f1-9e55-88ab2ff3b6ee","grant_number":"COE12"}],"_id":"22102","status":"public","external_id":{"arxiv":["2603.26215"]},"fulldoi":"https://doi.org/10.1145/3808296","file":[{"content_type":"application/pdf","file_name":"2026_ProcACMProgrammingLanguages_Chatterjee.pdf","access_level":"open_access","file_id":"22135","relation":"main_file","date_created":"2026-06-24T06:19:56Z","success":1,"creator":"dernst","file_size":858595,"date_updated":"2026-06-24T06:19:56Z","checksum":"994bf21d6269dabccf1e1091e02962c5"}],"language":[{"iso":"eng"}],"date_published":"2026-06-08T00:00:00Z","day":"08","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"supplementarymaterial":"no","keyword":["Static Program Analysis","Differential Privacy","Probabilistic Programming","Martingales"]},{"date_published":"2026-12-01T00:00:00Z","day":"01","language":[{"iso":"eng"}],"file":[{"access_level":"open_access","file_id":"22136","content_type":"application/pdf","file_name":"2026_NatureComm_Svoboda.pdf","file_size":1068919,"checksum":"b660048bb271f24d6763803e247d5c32","date_updated":"2026-06-24T06:50:24Z","date_created":"2026-06-24T06:50:24Z","relation":"main_file","success":1,"creator":"dernst"}],"fulldoi":"https://doi.org/10.1038/s41467-026-71777-2","external_id":{"pmid":["41997932"]},"supplementarymaterial":"yes","tmp":{"name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","short":"CC BY-NC-ND (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","image":"/images/cc_by_nc_nd.png"},"abstract":[{"text":"Evolutionary biology examines how the genetic and phenotypic composition\r\nof populations changes over time. An important goal is to determine the\r\nfixation probability of a single advantageous mutant that arises in a homogeneous\r\npopulation of N residents. Many real populations experience environmental\r\ngradients that cause mutations to be beneficial in some spatial\r\nregions but harmful in others. Here, we study the fixation probability of a\r\nmutant placed on a simple one-dimensional spatial structure that experiences\r\nsuch a gradient. The mutant’s fitness varies linearly from1 − s to 1 + s, whereas\r\nthe resident fitness is constant and equal to 1. The existing literature suggests\r\nthat such heterogeneity in the mutant’s fitness should lead to a decrease in its\r\nfixation probability. However, in this work, we find that small, non-negligible\r\ngradients (s < 1=√N) substantially increase the fixation probability,while larger\r\ngradients (s > (log N)/√N) substantially decrease it.Moreover, we quantify the\r\nstrength of this phenomenon analytically and we precisely delimit the range of\r\nthe gradients for which it occurs. Our computer simulations closely match\r\nthose findings. Altogether, our results indicate that subjecting a simple\r\npopulation structure to natural environmental conditions can produce strong\r\ncounterintuitive effects.","lang":"eng"}],"file_date_updated":"2026-06-24T06:50:24Z","title":"The effect of the fitness gradient on fixation probability","date_updated":"2026-09-16T07:36:49Z","license":"https://creativecommons.org/licenses/by-nc-nd/4.0/","pmid":1,"status":"public","_id":"22101","project":[{"call_identifier":"H2020","name":"Formal Methods for Stochastic Models: Algorithms and Applications","_id":"0599E47C-7A3F-11EA-A408-12923DDC885E","grant_number":"863818"},{"grant_number":"COE12","_id":"4029cfc7-b034-11f1-9e55-88ab2ff3b6ee","name":"Bilateral Artificial Intelligence (Chatterjee)"}],"type":"journal_article","doi":"10.1038/s41467-026-71777-2","DOAJ_listed":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"Springer Nature","ddc":["000"],"author":[{"id":"130759D2-D7DD-11E9-87D2-DE0DE6697425","first_name":"Jakub","full_name":"Svoboda, Jakub","orcid":"0000-0002-1419-3267","last_name":"Svoboda"},{"first_name":"Hossein","full_name":"Nemati, Hossein","last_name":"Nemati"},{"id":"3F24CCC8-F248-11E8-B48F-1D18A9856A87","first_name":"Josef","orcid":"0000-0002-1097-9684","full_name":"Tkadlec, Josef","last_name":"Tkadlec"},{"last_name":"Kaveh","first_name":"Kamran","full_name":"Kaveh, Kamran"},{"full_name":"Chatterjee, Krishnendu","orcid":"0000-0002-4561-241X","first_name":"Krishnendu","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","last_name":"Chatterjee"}],"publication_status":"published","article_type":"original","oa_version":"Published Version","intvolume":"        17","month":"12","year":"2026","oa":1,"article_processing_charge":"Yes","publication":"Nature Communications","researchdata_availability":"no","date_created":"2026-06-21T22:02:59Z","das_tickbox":"1","department":[{"_id":"KrCh"}],"scopus_import":"1","has_accepted_license":"1","citation":{"ieee":"J. Svoboda, H. Nemati, J. Tkadlec, K. Kaveh, and K. Chatterjee, “The effect of the fitness gradient on fixation probability,” <i>Nature Communications</i>, vol. 17. Springer Nature, 2026.","apa":"Svoboda, J., Nemati, H., Tkadlec, J., Kaveh, K., &#38; Chatterjee, K. (2026). The effect of the fitness gradient on fixation probability. <i>Nature Communications</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41467-026-71777-2\">https://doi.org/10.1038/s41467-026-71777-2</a>","short":"J. Svoboda, H. Nemati, J. Tkadlec, K. Kaveh, K. Chatterjee, Nature Communications 17 (2026).","chicago":"Svoboda, Jakub, Hossein Nemati, Josef Tkadlec, Kamran Kaveh, and Krishnendu Chatterjee. “The Effect of the Fitness Gradient on Fixation Probability.” <i>Nature Communications</i>. Springer Nature, 2026. <a href=\"https://doi.org/10.1038/s41467-026-71777-2\">https://doi.org/10.1038/s41467-026-71777-2</a>.","ista":"Svoboda J, Nemati H, Tkadlec J, Kaveh K, Chatterjee K. 2026. The effect of the fitness gradient on fixation probability. Nature Communications. 17, 5325.","mla":"Svoboda, Jakub, et al. “The Effect of the Fitness Gradient on Fixation Probability.” <i>Nature Communications</i>, vol. 17, 5325, Springer Nature, 2026, doi:<a href=\"https://doi.org/10.1038/s41467-026-71777-2\">10.1038/s41467-026-71777-2</a>.","ama":"Svoboda J, Nemati H, Tkadlec J, Kaveh K, Chatterjee K. The effect of the fitness gradient on fixation probability. <i>Nature Communications</i>. 2026;17. doi:<a href=\"https://doi.org/10.1038/s41467-026-71777-2\">10.1038/s41467-026-71777-2</a>"},"corr_author":"1","quality_controlled":"1","OA_place":"publisher","OA_type":"gold","volume":17,"ec_funded":1,"publication_identifier":{"eissn":["2041-1723"]},"article_number":"5325","dataavailabilitystatement":"Correspondence and requests for materials should be addressed to Krishnendu Chatterjee.","acknowledgement":"J.S. and K.C. were supported by the European Research Council (ERC)\r\nCoG 863818 (ForM-SMArt) and Austrian Science Fund (FWF) 10.55776/\r\nCOE12. J.T. was supported by GAČR grant 25-17377S and by Charles\r\nUniv. projects UNCE 24/SCI/008 and PRIMUS 24/SCI/012."},{"external_id":{"pmid":["42214837"]},"language":[{"iso":"eng"}],"fulldoi":"https://doi.org/10.1016/j.gde.2026.102487","day":"29","date_published":"2026-05-29T00:00:00Z","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"pmid":1,"date_updated":"2026-09-16T07:34:44Z","title":"Tracing cell lineages in the developing brain: Insights from mosaic analysis and clone-resolved transcriptomics","abstract":[{"text":"The cerebral cortex comprises diverse neuron and glial cell types generated by radial glial progenitors (RGPs) during development. Although RGPs broadly differentiate according to temporally and spatially regulated molecular logics, the lineage hierarchies linking individual progenitors to defined cell (sub)types are not well understood. Clone-resolved transcriptomics, combining molecular barcoding and single-cell RNA sequencing, allow high-resolution lineage tracing at the single-clone/cell level across different species and models. In this mini-review, we synthesize recent advances in this field, uncovering unexpected lineage relationships in the developing brain, with a particular focus on the cerebral cortex. We further highlight new insights into species-specific differences in the developmental programs generating cell-type diversity, linking changes in clonal architecture to lineage diversification during cortical evolution.","lang":"eng"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"Elsevier","doi":"10.1016/j.gde.2026.102487","_id":"21948","status":"public","project":[{"grant_number":"ALTF 994-2023","name":"Role of cell lineage in generating cell-type diversity in developing neocortex’","_id":"7c084566-9f16-11ee-852c-c88a1dbbf1cf"},{"grant_number":"F7805","name":"Stem Cell Modulation in Neural Development and Regeneration/ P05-Molecular Mechanisms of Neural Stem Cell Lineage Progression","_id":"059F6AB4-7A3F-11EA-A408-12923DDC885E"},{"name":"Neuronal circuits in health and disease (Hippenmeyer)","_id":"9e227eae-b037-11f1-b1e2-fb7da760c1dd","grant_number":"COE16"}],"type":"journal_article","author":[{"full_name":"Varela Martínez, Irene","first_name":"Irene","id":"a69b5985-8829-11f0-8fc2-d0af58f64471","last_name":"Varela Martínez"},{"id":"649134fd-d012-11ed-8f82-db1e5050f9ba","full_name":"Pipicelli, Fabrizia","first_name":"Fabrizia","last_name":"Pipicelli"},{"id":"37B36620-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-2279-1061","full_name":"Hippenmeyer, Simon","first_name":"Simon","last_name":"Hippenmeyer"}],"article_type":"original","publication_status":"epub_ahead","ddc":["570"],"oa":1,"year":"2026","article_processing_charge":"Yes (via OA deal)","month":"05","oa_version":"Published Version","main_file_link":[{"url":"https://doi.org/10.1016/j.gde.2026.102487","open_access":"1"}],"intvolume":"        99","citation":{"ama":"Varela Martínez I, Pipicelli F, Hippenmeyer S. Tracing cell lineages in the developing brain: Insights from mosaic analysis and clone-resolved transcriptomics. <i>Current Opinion in Genetics &#38; Development</i>. 2026;99. doi:<a href=\"https://doi.org/10.1016/j.gde.2026.102487\">10.1016/j.gde.2026.102487</a>","mla":"Varela Martínez, Irene, et al. “Tracing Cell Lineages in the Developing Brain: Insights from Mosaic Analysis and Clone-Resolved Transcriptomics.” <i>Current Opinion in Genetics &#38; Development</i>, vol. 99, 102487, Elsevier, 2026, doi:<a href=\"https://doi.org/10.1016/j.gde.2026.102487\">10.1016/j.gde.2026.102487</a>.","ista":"Varela Martínez I, Pipicelli F, Hippenmeyer S. 2026. Tracing cell lineages in the developing brain: Insights from mosaic analysis and clone-resolved transcriptomics. Current Opinion in Genetics &#38; Development. 99, 102487.","chicago":"Varela Martínez, Irene, Fabrizia Pipicelli, and Simon Hippenmeyer. “Tracing Cell Lineages in the Developing Brain: Insights from Mosaic Analysis and Clone-Resolved Transcriptomics.” <i>Current Opinion in Genetics &#38; Development</i>. Elsevier, 2026. <a href=\"https://doi.org/10.1016/j.gde.2026.102487\">https://doi.org/10.1016/j.gde.2026.102487</a>.","short":"I. Varela Martínez, F. Pipicelli, S. Hippenmeyer, Current Opinion in Genetics &#38; Development 99 (2026).","ieee":"I. Varela Martínez, F. Pipicelli, and S. Hippenmeyer, “Tracing cell lineages in the developing brain: Insights from mosaic analysis and clone-resolved transcriptomics,” <i>Current Opinion in Genetics &#38; Development</i>, vol. 99. Elsevier, 2026.","apa":"Varela Martínez, I., Pipicelli, F., &#38; Hippenmeyer, S. (2026). Tracing cell lineages in the developing brain: Insights from mosaic analysis and clone-resolved transcriptomics. <i>Current Opinion in Genetics &#38; Development</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.gde.2026.102487\">https://doi.org/10.1016/j.gde.2026.102487</a>"},"corr_author":"1","has_accepted_license":"1","date_created":"2026-06-07T22:01:35Z","department":[{"_id":"SiHi"}],"scopus_import":"1","publication":"Current Opinion in Genetics & Development","article_number":"102487","acknowledgement":"We wish to thank all members of the Hippenmeyer laboratory at ISTA for exciting discussions on the subject of this review. We apologize to colleagues whose work we could not cite and/or discuss in the frame of the available space. Work in the Hippenmeyer laboratory on the discussed topic is supported by ISTA institutional funds, an EMBO LTF (ALTF 994–2023) to F.P., FWF SFB F78 (10.55776/F78) to S.H., and FWF Cluster of Excellence COE16 (10.55776/COE16) to S.H.","volume":99,"publication_identifier":{"eissn":["1879-0380"],"issn":["0959-437X"]},"OA_place":"publisher","quality_controlled":"1","PlanS_conform":"1","OA_type":"hybrid"},{"year":"2026","degree_awarded":"PhD","article_processing_charge":"No","month":"08","oa_version":"Published Version","author":[{"last_name":"Vijatovic","full_name":"Vijatovic, David","orcid":"0000-0002-5494-0941","first_name":"David","id":"cf391e77-ec3c-11ea-a124-d69323410b58"}],"publication_status":"published","ddc":["573"],"acknowledgement":"I am also grateful for the financial support that made this work possible, including the\r\nEuropean Research Council (ERC Starting Grant 101041551), the Austrian Science\r\nFund (FWF, Cluster of Excellence 10.55776/COE16), the GFF Lower Austria FTI\r\nStrategy Dissertation Fellowship (FTI21-D-046), and the FENS/IBRO-PERC\r\nExchange Fellowship. ","supervisor":[{"id":"56BE8254-C4F0-11E9-8E45-0B23E6697425","first_name":"Lora Beatrice Jaeger","full_name":"Sweeney, Lora Beatrice Jaeger","orcid":"0000-0001-9242-5601","last_name":"Sweeney"}],"publication_identifier":{"isbn":["978-3-99078-082-4"],"issn":["2663-337X"]},"OA_place":"publisher","citation":{"chicago":"Vijatovic, David. “Dissecting the Molecular and Functional Basis of Motor Control in the Frog Xenopus Laevis.” Institute of Science and Technology Austria, 2026. <a href=\"https://doi.org/10.15479/AT-ISTA-22667\">https://doi.org/10.15479/AT-ISTA-22667</a>.","ieee":"D. Vijatovic, “Dissecting the molecular and functional basis of motor control in the frog Xenopus laevis,” Institute of Science and Technology Austria, 2026.","apa":"Vijatovic, D. (2026). <i>Dissecting the molecular and functional basis of motor control in the frog Xenopus laevis</i>. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT-ISTA-22667\">https://doi.org/10.15479/AT-ISTA-22667</a>","short":"D. Vijatovic, Dissecting the Molecular and Functional Basis of Motor Control in the Frog Xenopus Laevis, Institute of Science and Technology Austria, 2026.","mla":"Vijatovic, David. <i>Dissecting the Molecular and Functional Basis of Motor Control in the Frog Xenopus Laevis</i>. Institute of Science and Technology Austria, 2026, doi:<a href=\"https://doi.org/10.15479/AT-ISTA-22667\">10.15479/AT-ISTA-22667</a>.","ama":"Vijatovic D. Dissecting the molecular and functional basis of motor control in the frog Xenopus laevis. 2026. doi:<a href=\"https://doi.org/10.15479/AT-ISTA-22667\">10.15479/AT-ISTA-22667</a>","ista":"Vijatovic D. 2026. Dissecting the molecular and functional basis of motor control in the frog Xenopus laevis. Institute of Science and Technology Austria."},"corr_author":"1","acknowledged_ssus":[{"_id":"Bio"},{"_id":"LifeSc"}],"has_accepted_license":"1","related_material":{"record":[{"id":"15016","relation":"part_of_dissertation","status":"public"},{"relation":"part_of_dissertation","status":"public","id":"21746"}]},"alternative_title":["ISTA Thesis"],"date_created":"2026-08-10T13:44:30Z","department":[{"_id":"GradSch"},{"_id":"LoSw"}],"doi_confirm":"1","language":[{"iso":"eng"}],"file":[{"date_created":"2026-08-10T13:35:39Z","relation":"source_file","creator":"dvijatov","file_size":14322760,"checksum":"e3acfea4b1a3abf99e74224656740a15","date_updated":"2026-08-10T13:35:39Z","file_name":"2026_Vijatovic_David_Thesis.docx","content_type":"application/vnd.openxmlformats-officedocument.wordprocessingml.document","access_level":"closed","file_id":"22669"},{"creator":"dvijatov","relation":"main_file","date_created":"2026-08-12T13:44:36Z","checksum":"dc8c78ae14f69e54faa41e65db5c6402","date_updated":"2026-08-12T13:44:36Z","file_size":116926375,"embargo":"2027-08-10","content_type":"application/pdf","file_name":"2026_Vijatovic_David_Thesis.pdf","embargo_to":"open_access","file_id":"22695","access_level":"closed"}],"fulldoi":"https://doi.org/10.15479/AT-ISTA-22667","day":"10","date_published":"2026-08-10T00:00:00Z","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","publisher":"Institute of Science and Technology Austria","doi":"10.15479/AT-ISTA-22667","status":"public","_id":"22667","type":"dissertation","project":[{"name":"Development and Evolution of Tetrapod Motor Circuits","_id":"ebb66355-77a9-11ec-83b8-b8ac210a4dae","grant_number":"101041551"},{"name":"Development of V1 interneuron diversity during swim-to-walk transition of Xenopus metamorphosis","_id":"bd73af52-d553-11ed-ba76-912049f0ac7a","grant_number":"FTI21-D-046"},{"grant_number":"3(GG016346-01)","_id":"34a02c70-11ca-11ed-8bc3-fbfd2c86c88f","name":"Development of Viral Vectors for Amphibian Gene Delivery and Manipulation"}],"date_updated":"2026-09-16T07:33:53Z","page":"172","title":"Dissecting the molecular and functional basis of motor control in the frog Xenopus laevis","file_date_updated":"2026-08-12T13:44:36Z"},{"acknowledgement":"This work was supported by the Austrian Science Fund (FWF) (10.55776/PAT1617625).","quality_controlled":"1","OA_type":"closed access","publication_identifier":{"issn":["1931-3128"],"eissn":["1934-6069"]},"volume":34,"citation":{"ista":"Williams-Jones D, Bravo JPK. 2026. NAD to the bone: How bacteria put phages under aRES-t … and how phages fight back. Cell Host &#38; Microbe. 34(6), 978–980.","ama":"Williams-Jones D, Bravo JPK. NAD to the bone: How bacteria put phages under aRES-t … and how phages fight back. <i>Cell Host &#38; Microbe</i>. 2026;34(6):978-980. doi:<a href=\"https://doi.org/10.1016/j.chom.2026.05.013\">10.1016/j.chom.2026.05.013</a>","mla":"Williams-Jones, Daniel, and Jack Peter Kelly Bravo. “NAD to the Bone: How Bacteria Put Phages under ARES-t … and How Phages Fight Back.” <i>Cell Host &#38; Microbe</i>, vol. 34, no. 6, Elsevier, 2026, pp. 978–80, doi:<a href=\"https://doi.org/10.1016/j.chom.2026.05.013\">10.1016/j.chom.2026.05.013</a>.","apa":"Williams-Jones, D., &#38; Bravo, J. P. K. (2026). NAD to the bone: How bacteria put phages under aRES-t … and how phages fight back. <i>Cell Host &#38; Microbe</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.chom.2026.05.013\">https://doi.org/10.1016/j.chom.2026.05.013</a>","ieee":"D. Williams-Jones and J. P. K. Bravo, “NAD to the bone: How bacteria put phages under aRES-t … and how phages fight back,” <i>Cell Host &#38; Microbe</i>, vol. 34, no. 6. Elsevier, pp. 978–980, 2026.","short":"D. Williams-Jones, J.P.K. Bravo, Cell Host &#38; Microbe 34 (2026) 978–980.","chicago":"Williams-Jones, Daniel, and Jack Peter Kelly Bravo. “NAD to the Bone: How Bacteria Put Phages under ARES-t … and How Phages Fight Back.” <i>Cell Host &#38; Microbe</i>. Elsevier, 2026. <a href=\"https://doi.org/10.1016/j.chom.2026.05.013\">https://doi.org/10.1016/j.chom.2026.05.013</a>."},"corr_author":"1","publication":"Cell Host & Microbe","das_tickbox":"1","date_created":"2026-06-14T22:01:42Z","department":[{"_id":"JaBr"}],"scopus_import":"1","year":"2026","article_processing_charge":"No","oa_version":"None","issue":"6","intvolume":"        34","month":"06","author":[{"last_name":"Williams-Jones","id":"128eaab9-b327-11f0-bdbe-e02d5abac73b","first_name":"Daniel","full_name":"Williams-Jones, Daniel"},{"last_name":"Bravo","first_name":"Jack Peter Kelly","orcid":"0000-0003-0456-0753","full_name":"Bravo, Jack Peter Kelly","id":"96aecfa5-8931-11ee-af30-aa6a5d6eee0e"}],"article_type":"original","publication_status":"published","doi":"10.1016/j.chom.2026.05.013","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"Elsevier","_id":"21996","status":"public","project":[{"_id":"9f295cab-ad08-11f1-bc83-9e197d0f6d50","name":"Search & Destroy: Mechanisms of anti-plasmid immunity","grant_number":"PAT1617625"}],"type":"journal_article","date_updated":"2026-09-16T07:35:26Z","page":"978-980","pmid":1,"abstract":[{"lang":"eng","text":"In this issue of Cell Host & Microbe, Osterman et al. discover aRES,1 a new family of bacterial immune proteins that deplete cellular NAD+, generating cleavage products that cannot be utilized by canonical phage NAD+ regeneration pathways. They identify the invader-specific trigger for aRES and characterize two distinct evolutionary countermeasures employed by phages to resist aRES."}],"title":"NAD to the bone: How bacteria put phages under aRES-t … and how phages fight back","language":[{"iso":"eng"}],"fulldoi":"https://doi.org/10.1016/j.chom.2026.05.013","external_id":{"pmid":["42269584"]},"date_published":"2026-06-10T00:00:00Z","day":"10"},{"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"article_processing_charge":"No","oa":1,"year":"2026","main_file_link":[{"url":"https://doi.org/10.5281/ZENODO.18930113","open_access":"1"}],"oa_version":"Published Version","month":"03","fulldoi":"https://doi.org/10.5281/ZENODO.18930113","author":[{"orcid":"0000-0002-4561-241X","full_name":"Chatterjee, Krishnendu","first_name":"Krishnendu","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","last_name":"Chatterjee"},{"last_name":"Kafshdar Goharshadi","id":"103b4fa0-896a-11ed-bdf8-87b697bef40d","full_name":"Kafshdar Goharshadi, Ehsan","orcid":"0000-0002-8595-0587","first_name":"Ehsan"},{"first_name":"Dorde","orcid":"0000-0002-4681-1699","full_name":"Zikelic, Dorde","id":"294AA7A6-F248-11E8-B48F-1D18A9856A87","last_name":"Zikelic"}],"day":"09","date_published":"2026-03-09T00:00:00Z","ddc":["000"],"doi":"10.5281/ZENODO.18930113","publisher":"Zenodo","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","OA_type":"green","OA_place":"repository","type":"research_data_reference","status":"public","_id":"22134","related_material":{"record":[{"relation":"used_in_publication","status":"public","id":"22102"}]},"date_updated":"2026-09-16T07:36:13Z","has_accepted_license":"1","corr_author":"1","citation":{"short":"K. Chatterjee, E. Goharshady, D. Zikelic, (2026).","ieee":"K. Chatterjee, E. Goharshady, and D. Zikelic, “SuperDP: Differential Privacy Refutation via Supermartingales.” Zenodo, 2026.","apa":"Chatterjee, K., Goharshady, E., &#38; Zikelic, D. (2026). SuperDP: Differential Privacy Refutation via Supermartingales. Zenodo. <a href=\"https://doi.org/10.5281/ZENODO.18930113\">https://doi.org/10.5281/ZENODO.18930113</a>","chicago":"Chatterjee, Krishnendu, Ehsan Goharshady, and Dorde Zikelic. “SuperDP: Differential Privacy Refutation via Supermartingales.” Zenodo, 2026. <a href=\"https://doi.org/10.5281/ZENODO.18930113\">https://doi.org/10.5281/ZENODO.18930113</a>.","ista":"Chatterjee K, Goharshady E, Zikelic D. 2026. SuperDP: Differential Privacy Refutation via Supermartingales, Zenodo, <a href=\"https://doi.org/10.5281/ZENODO.18930113\">10.5281/ZENODO.18930113</a>.","ama":"Chatterjee K, Goharshady E, Zikelic D. SuperDP: Differential Privacy Refutation via Supermartingales. 2026. doi:<a href=\"https://doi.org/10.5281/ZENODO.18930113\">10.5281/ZENODO.18930113</a>","mla":"Chatterjee, Krishnendu, et al. <i>SuperDP: Differential Privacy Refutation via Supermartingales</i>. Zenodo, 2026, doi:<a href=\"https://doi.org/10.5281/ZENODO.18930113\">10.5281/ZENODO.18930113</a>."},"abstract":[{"lang":"eng","text":"This artifact provides the source code, benchmarks, and scripts necessary to build and reproduce the experimental results for `SuperDP` (Accepted at PLDI 2026). It also includes instructions for running the tool on user-provided inputs."}],"department":[{"_id":"KrCh"}],"title":"SuperDP: Differential Privacy Refutation via Supermartingales","date_created":"2026-06-24T06:25:29Z"}]
