[{"day":"02","publication_status":"published","language":[{"iso":"eng"}],"project":[{"_id":"257A4776-B435-11E9-9278-68D0E5697425","grant_number":"281511","name":"Memory-related information processing in neuronal circuits of the hippocampus and entorhinal cortex","call_identifier":"FP7"}],"publication":"Neuron","doi":"10.1016/j.neuron.2018.11.015","oa":1,"date_published":"2019-01-02T00:00:00Z","date_created":"2019-01-13T22:59:10Z","citation":{"apa":"Xu, H., Baracskay, P., O’Neill, J., &#38; Csicsvari, J. L. (2019). Assembly responses of hippocampal CA1 place cells predict learned behavior in goal-directed spatial tasks on the radial eight-arm maze. <i>Neuron</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.neuron.2018.11.015\">https://doi.org/10.1016/j.neuron.2018.11.015</a>","ama":"Xu H, Baracskay P, O’Neill J, Csicsvari JL. Assembly responses of hippocampal CA1 place cells predict learned behavior in goal-directed spatial tasks on the radial eight-arm maze. <i>Neuron</i>. 2019;101(1):119-132.e4. doi:<a href=\"https://doi.org/10.1016/j.neuron.2018.11.015\">10.1016/j.neuron.2018.11.015</a>","short":"H. Xu, P. Baracskay, J. O’Neill, J.L. Csicsvari, Neuron 101 (2019) 119–132.e4.","ieee":"H. Xu, P. Baracskay, J. O’Neill, and J. L. Csicsvari, “Assembly responses of hippocampal CA1 place cells predict learned behavior in goal-directed spatial tasks on the radial eight-arm maze,” <i>Neuron</i>, vol. 101, no. 1. Elsevier, p. 119–132.e4, 2019.","chicago":"Xu, Haibing, Peter Baracskay, Joseph O’Neill, and Jozsef L Csicsvari. “Assembly Responses of Hippocampal CA1 Place Cells Predict Learned Behavior in Goal-Directed Spatial Tasks on the Radial Eight-Arm Maze.” <i>Neuron</i>. Elsevier, 2019. <a href=\"https://doi.org/10.1016/j.neuron.2018.11.015\">https://doi.org/10.1016/j.neuron.2018.11.015</a>.","mla":"Xu, Haibing, et al. “Assembly Responses of Hippocampal CA1 Place Cells Predict Learned Behavior in Goal-Directed Spatial Tasks on the Radial Eight-Arm Maze.” <i>Neuron</i>, vol. 101, no. 1, Elsevier, 2019, p. 119–132.e4, doi:<a href=\"https://doi.org/10.1016/j.neuron.2018.11.015\">10.1016/j.neuron.2018.11.015</a>.","ista":"Xu H, Baracskay P, O’Neill J, Csicsvari JL. 2019. Assembly responses of hippocampal CA1 place cells predict learned behavior in goal-directed spatial tasks on the radial eight-arm maze. Neuron. 101(1), 119–132.e4."},"type":"journal_article","department":[{"_id":"JoCs"}],"publisher":"Elsevier","intvolume":"       101","isi":1,"quality_controlled":"1","month":"01","status":"public","title":"Assembly responses of hippocampal CA1 place cells predict learned behavior in goal-directed spatial tasks on the radial eight-arm maze","volume":101,"_id":"5828","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","external_id":{"isi":["000454791500014"]},"publication_identifier":{"issn":["1097-4199"]},"issue":"1","scopus_import":"1","main_file_link":[{"open_access":"1","url":"https://www.doi.org/10.1016/j.neuron.2018.11.015"}],"related_material":{"record":[{"status":"public","id":"837","relation":"dissertation_contains"}],"link":[{"relation":"press_release","url":"https://ist.ac.at/en/news/reading-rats-minds/","description":"News on IST Homepage"}]},"page":"119-132.e4","article_type":"original","ec_funded":1,"date_updated":"2025-07-10T11:53:01Z","abstract":[{"lang":"eng","text":"Hippocampus is needed for both spatial working and reference memories. Here, using a radial eight-arm maze, we examined how the combined demand on these memories influenced CA1 place cell assemblies while reference memories were partially updated. This was contrasted with control tasks requiring only working memory or the update of reference memory. Reference memory update led to the reward-directed place field shifts at newly rewarded arms and to the gradual strengthening of firing in passes between newly rewarded arms but not between those passes that included a familiar-rewarded arm. At the maze center, transient network synchronization periods preferentially replayed trajectories of the next chosen arm in reference memory tasks but the previously visited arm in the working memory task. Hence, reference memory demand was uniquely associated with a gradual, goal novelty-related reorganization of place cell assemblies and with trajectory replay that reflected the animal's decision of which arm to visit next."}],"author":[{"first_name":"Haibing","full_name":"Xu, Haibing","id":"310349D0-F248-11E8-B48F-1D18A9856A87","last_name":"Xu"},{"first_name":"Peter","full_name":"Baracskay, Peter","id":"361CC00E-F248-11E8-B48F-1D18A9856A87","last_name":"Baracskay"},{"last_name":"O'Neill","id":"426376DC-F248-11E8-B48F-1D18A9856A87","first_name":"Joseph","full_name":"O'Neill, Joseph"},{"orcid":"0000-0002-5193-4036","last_name":"Csicsvari","first_name":"Jozsef L","full_name":"Csicsvari, Jozsef L","id":"3FA14672-F248-11E8-B48F-1D18A9856A87"}],"year":"2019","article_processing_charge":"No","oa_version":"Published Version"},{"article_type":"original","main_file_link":[{"open_access":"1","url":"https://www.ncbi.nlm.nih.gov/pubmed/30378140"}],"page":"1033-1044","pmid":1,"oa_version":"Published Version","abstract":[{"text":"CLE peptides have been implicated in various developmental processes of plants and mediate their responses to environmental stimuli. However, the biological relevance of most CLE genes remains to be functionally characterized. Here, we report that CLE9, which is expressed in stomata, acts as an essential regulator in the induction of stomatal closure. Exogenous application of CLE9 peptides or overexpression of CLE9 effectively led to stomatal closure and enhanced drought tolerance, whereas CLE9 loss-of-function mutants were sensitivity to drought stress. CLE9-induced stomatal closure was impaired in abscisic acid (ABA)-deficient mutants, indicating that ABA is required for CLE9-medaited guard cell signalling. We further deciphered that two guard cell ABA-signalling components, OST1 and SLAC1, were responsible for CLE9-induced stomatal closure. MPK3 and MPK6 were activated by the CLE9 peptide, and CLE9 peptides failed to close stomata in mpk3 and mpk6 mutants. In addition, CLE9 peptides stimulated the induction of hydrogen peroxide (H2O2) and nitric oxide (NO) synthesis associated with stomatal closure, which was abolished in the NADPH oxidase-deficient mutants or nitric reductase mutants, respectively. Collectively, our results reveal a novel ABA-dependent function of CLE9 in the regulation of stomatal apertures, thereby suggesting a potential role of CLE9 in the stress acclimatization of plants.","lang":"eng"}],"date_updated":"2025-01-09T07:28:01Z","year":"2019","article_processing_charge":"No","author":[{"last_name":"Zhang","first_name":"Luosha","full_name":"Zhang, Luosha"},{"full_name":"Shi, Xiong","first_name":"Xiong","last_name":"Shi"},{"last_name":"Zhang","full_name":"Zhang, Yutao","first_name":"Yutao"},{"last_name":"Wang","full_name":"Wang, Jiajing","first_name":"Jiajing"},{"last_name":"Yang","first_name":"Jingwei","full_name":"Yang, Jingwei"},{"last_name":"Ishida","full_name":"Ishida, Takashi","first_name":"Takashi"},{"last_name":"Jiang","full_name":"Jiang, Wenqian","first_name":"Wenqian"},{"last_name":"Han","first_name":"Xiangyu","full_name":"Han, Xiangyu"},{"last_name":"Kang","first_name":"Jingke","full_name":"Kang, Jingke"},{"first_name":"Xuening","full_name":"Wang, Xuening","last_name":"Wang"},{"last_name":"Pan","first_name":"Lixia","full_name":"Pan, Lixia"},{"last_name":"Lv","first_name":"Shuo","full_name":"Lv, Shuo"},{"last_name":"Cao","full_name":"Cao, Bing","first_name":"Bing"},{"first_name":"Yonghong","full_name":"Zhang, Yonghong","last_name":"Zhang"},{"first_name":"Jinbin","full_name":"Wu, Jinbin","last_name":"Wu"},{"last_name":"Han","first_name":"Huibin","full_name":"Han, Huibin","id":"31435098-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Hu","first_name":"Zhubing","full_name":"Hu, Zhubing"},{"full_name":"Cui, Langjun","first_name":"Langjun","last_name":"Cui"},{"first_name":"Shinichiro","full_name":"Sawa, Shinichiro","last_name":"Sawa"},{"last_name":"He","first_name":"Junmin","full_name":"He, Junmin"},{"last_name":"Wang","full_name":"Wang, Guodong","first_name":"Guodong"}],"external_id":{"pmid":["30378140"],"isi":["000459014800021"]},"issue":"3","scopus_import":"1","publication_identifier":{"issn":["01407791"]},"title":"CLE9 peptide-induced stomatal closure is mediated by abscisic acid, hydrogen peroxide, and nitric oxide in arabidopsis thaliana","volume":42,"status":"public","acknowledgement":"We thank Drs. Juan Xu, Yongfeng Guo, and Annie Marion-Poll for sharing materials. We are grateful to Profs. Xiaoping She for helpful discussion and Zhezhi Wang for his generosity in providing laboratory facilities. The study is supported by the National Natural Science Foundation of China (31771556, 31271575, and 31200902 to G. W.), by the 100-Talent Program of Shaanxi Province (to G. W.), by the Fundamental Research Funds for the Central Universities (GK201702016 to G. W.; GK201603110 to L. C.), partly by the open funds of the State Key Laboratory of Plant Physiology and Biochemistry (SKLPPBKF1805), and by the Initial Project for Post-Graduates of Hubei University of Medicine (2016QDJZR14 to Y. Z.).","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"5830","quality_controlled":"1","month":"03","OA_type":"free access","citation":{"short":"L. Zhang, X. Shi, Y. Zhang, J. Wang, J. Yang, T. Ishida, W. Jiang, X. Han, J. Kang, X. Wang, L. Pan, S. Lv, B. Cao, Y. Zhang, J. Wu, H. Han, Z. Hu, L. Cui, S. Sawa, J. He, G. Wang, Plant Cell and Environment 42 (2019) 1033–1044.","ama":"Zhang L, Shi X, Zhang Y, et al. CLE9 peptide-induced stomatal closure is mediated by abscisic acid, hydrogen peroxide, and nitric oxide in arabidopsis thaliana. <i>Plant Cell and Environment</i>. 2019;42(3):1033-1044. doi:<a href=\"https://doi.org/10.1111/pce.13475\">10.1111/pce.13475</a>","apa":"Zhang, L., Shi, X., Zhang, Y., Wang, J., Yang, J., Ishida, T., … Wang, G. (2019). CLE9 peptide-induced stomatal closure is mediated by abscisic acid, hydrogen peroxide, and nitric oxide in arabidopsis thaliana. <i>Plant Cell and Environment</i>. Wiley. <a href=\"https://doi.org/10.1111/pce.13475\">https://doi.org/10.1111/pce.13475</a>","ista":"Zhang L, Shi X, Zhang Y, Wang J, Yang J, Ishida T, Jiang W, Han X, Kang J, Wang X, Pan L, Lv S, Cao B, Zhang Y, Wu J, Han H, Hu Z, Cui L, Sawa S, He J, Wang G. 2019. CLE9 peptide-induced stomatal closure is mediated by abscisic acid, hydrogen peroxide, and nitric oxide in arabidopsis thaliana. Plant Cell and Environment. 42(3), 1033–1044.","mla":"Zhang, Luosha, et al. “CLE9 Peptide-Induced Stomatal Closure Is Mediated by Abscisic Acid, Hydrogen Peroxide, and Nitric Oxide in Arabidopsis Thaliana.” <i>Plant Cell and Environment</i>, vol. 42, no. 3, Wiley, 2019, pp. 1033–44, doi:<a href=\"https://doi.org/10.1111/pce.13475\">10.1111/pce.13475</a>.","ieee":"L. Zhang <i>et al.</i>, “CLE9 peptide-induced stomatal closure is mediated by abscisic acid, hydrogen peroxide, and nitric oxide in arabidopsis thaliana,” <i>Plant Cell and Environment</i>, vol. 42, no. 3. Wiley, pp. 1033–1044, 2019.","chicago":"Zhang, Luosha, Xiong Shi, Yutao Zhang, Jiajing Wang, Jingwei Yang, Takashi Ishida, Wenqian Jiang, et al. “CLE9 Peptide-Induced Stomatal Closure Is Mediated by Abscisic Acid, Hydrogen Peroxide, and Nitric Oxide in Arabidopsis Thaliana.” <i>Plant Cell and Environment</i>. Wiley, 2019. <a href=\"https://doi.org/10.1111/pce.13475\">https://doi.org/10.1111/pce.13475</a>."},"publisher":"Wiley","intvolume":"        42","isi":1,"department":[{"_id":"JiFr"}],"type":"journal_article","date_created":"2019-01-13T22:59:11Z","publication":"Plant Cell and Environment","language":[{"iso":"eng"}],"OA_place":"publisher","doi":"10.1111/pce.13475","oa":1,"date_published":"2019-03-01T00:00:00Z","day":"01","publication_status":"published"},{"doi":"10.1007/s00023-018-00757-0","date_published":"2019-04-01T00:00:00Z","oa":1,"project":[{"call_identifier":"H2020","name":"Analysis of quantum many-body systems","grant_number":"694227","_id":"25C6DC12-B435-11E9-9278-68D0E5697425"},{"call_identifier":"FWF","name":"Structure of the Excitation Spectrum for Many-Body Quantum Systems","_id":"25C878CE-B435-11E9-9278-68D0E5697425","grant_number":"P27533_N27"},{"name":"IST Austria Open Access Fund","_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854"}],"file_date_updated":"2020-07-14T12:47:12Z","publication":"Annales Henri Poincare","file":[{"content_type":"application/pdf","file_size":859846,"date_created":"2019-01-28T15:27:17Z","file_name":"2019_Annales_Moser.pdf","relation":"main_file","checksum":"255e42f957a8e2b10aad2499c750a8d6","file_id":"5894","access_level":"open_access","creator":"dernst","date_updated":"2020-07-14T12:47:12Z"}],"language":[{"iso":"eng"}],"publication_status":"published","day":"01","publisher":"Springer","isi":1,"intvolume":"        20","department":[{"_id":"RoSe"}],"type":"journal_article","citation":{"apa":"Moser, T., &#38; Seiringer, R. (2019). Energy contribution of a point-interacting impurity in a Fermi gas. <i>Annales Henri Poincare</i>. Springer. <a href=\"https://doi.org/10.1007/s00023-018-00757-0\">https://doi.org/10.1007/s00023-018-00757-0</a>","ama":"Moser T, Seiringer R. Energy contribution of a point-interacting impurity in a Fermi gas. <i>Annales Henri Poincare</i>. 2019;20(4):1325–1365. doi:<a href=\"https://doi.org/10.1007/s00023-018-00757-0\">10.1007/s00023-018-00757-0</a>","short":"T. Moser, R. Seiringer, Annales Henri Poincare 20 (2019) 1325–1365.","chicago":"Moser, Thomas, and Robert Seiringer. “Energy Contribution of a Point-Interacting Impurity in a Fermi Gas.” <i>Annales Henri Poincare</i>. Springer, 2019. <a href=\"https://doi.org/10.1007/s00023-018-00757-0\">https://doi.org/10.1007/s00023-018-00757-0</a>.","ieee":"T. Moser and R. Seiringer, “Energy contribution of a point-interacting impurity in a Fermi gas,” <i>Annales Henri Poincare</i>, vol. 20, no. 4. Springer, pp. 1325–1365, 2019.","mla":"Moser, Thomas, and Robert Seiringer. “Energy Contribution of a Point-Interacting Impurity in a Fermi Gas.” <i>Annales Henri Poincare</i>, vol. 20, no. 4, Springer, 2019, pp. 1325–1365, doi:<a href=\"https://doi.org/10.1007/s00023-018-00757-0\">10.1007/s00023-018-00757-0</a>.","ista":"Moser T, Seiringer R. 2019. Energy contribution of a point-interacting impurity in a Fermi gas. Annales Henri Poincare. 20(4), 1325–1365."},"date_created":"2019-01-20T22:59:17Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"5856","title":"Energy contribution of a point-interacting impurity in a Fermi gas","volume":20,"status":"public","quality_controlled":"1","ddc":["530"],"month":"04","arxiv":1,"oa_version":"Published Version","has_accepted_license":"1","ec_funded":1,"abstract":[{"text":"We give a bound on the ground-state energy of a system of N non-interacting fermions in a three-dimensional cubic box interacting with an impurity particle via point interactions. We show that the change in energy compared to the system in the absence of the impurity is bounded in terms of the gas density and the scattering length of the interaction, independently of N. Our bound holds as long as the ratio of the mass of the impurity to the one of the gas particles is larger than a critical value m∗ ∗≈ 0.36 , which is the same regime for which we recently showed stability of the system.","lang":"eng"}],"date_updated":"2025-07-10T11:53:03Z","author":[{"first_name":"Thomas","full_name":"Moser, Thomas","id":"2B5FC9A4-F248-11E8-B48F-1D18A9856A87","last_name":"Moser"},{"orcid":"0000-0002-6781-0521","last_name":"Seiringer","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87","full_name":"Seiringer, Robert","first_name":"Robert"}],"year":"2019","article_processing_charge":"Yes (via OA deal)","article_type":"original","related_material":{"record":[{"id":"52","relation":"dissertation_contains","status":"public"}]},"page":"1325–1365","scopus_import":"1","issue":"4","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"publication_identifier":{"issn":["1424-0637"]},"external_id":{"isi":["000462444300008"],"arxiv":["1807.00739"]}},{"date_created":"2019-01-20T22:59:17Z","citation":{"ista":"Fulek R, Pach J. 2019. Thrackles: An improved upper bound. Discrete Applied Mathematics. 259(4), 266–231.","mla":"Fulek, Radoslav, and János Pach. “Thrackles: An Improved Upper Bound.” <i>Discrete Applied Mathematics</i>, vol. 259, no. 4, Elsevier, 2019, pp. 266–231, doi:<a href=\"https://doi.org/10.1016/j.dam.2018.12.025\">10.1016/j.dam.2018.12.025</a>.","chicago":"Fulek, Radoslav, and János Pach. “Thrackles: An Improved Upper Bound.” <i>Discrete Applied Mathematics</i>. Elsevier, 2019. <a href=\"https://doi.org/10.1016/j.dam.2018.12.025\">https://doi.org/10.1016/j.dam.2018.12.025</a>.","ieee":"R. Fulek and J. Pach, “Thrackles: An improved upper bound,” <i>Discrete Applied Mathematics</i>, vol. 259, no. 4. Elsevier, pp. 266–231, 2019.","apa":"Fulek, R., &#38; Pach, J. (2019). Thrackles: An improved upper bound. <i>Discrete Applied Mathematics</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.dam.2018.12.025\">https://doi.org/10.1016/j.dam.2018.12.025</a>","short":"R. Fulek, J. Pach, Discrete Applied Mathematics 259 (2019) 266–231.","ama":"Fulek R, Pach J. Thrackles: An improved upper bound. <i>Discrete Applied Mathematics</i>. 2019;259(4):266-231. doi:<a href=\"https://doi.org/10.1016/j.dam.2018.12.025\">10.1016/j.dam.2018.12.025</a>"},"department":[{"_id":"UlWa"}],"type":"journal_article","publisher":"Elsevier","intvolume":"       259","isi":1,"day":"30","publication_status":"published","language":[{"iso":"eng"}],"project":[{"call_identifier":"FWF","grant_number":"M02281","_id":"261FA626-B435-11E9-9278-68D0E5697425","name":"Eliminating intersections in drawings of graphs"}],"publication":"Discrete Applied Mathematics","doi":"10.1016/j.dam.2018.12.025","oa":1,"date_published":"2019-04-30T00:00:00Z","external_id":{"isi":["000466061100020"],"arxiv":["1708.08037"]},"publication_identifier":{"issn":["0166218X"]},"scopus_import":"1","issue":"4","main_file_link":[{"url":"https://arxiv.org/abs/1708.08037","open_access":"1"}],"related_material":{"record":[{"status":"public","relation":"earlier_version","id":"433"}]},"page":"266-231","article_type":"original","date_updated":"2025-07-10T11:52:38Z","abstract":[{"text":"A thrackle is a graph drawn in the plane so that every pair of its edges meet exactly once: either at a common end vertex or in a proper crossing. We prove that any thrackle of n vertices has at most 1.3984n edges. Quasi-thrackles are defined similarly, except that every pair of edges that do not share a vertex are allowed to cross an odd number of times. It is also shown that the maximum number of edges of a quasi-thrackle on n vertices is [Formula presented](n−1), and that this bound is best possible for infinitely many values of n.","lang":"eng"}],"article_processing_charge":"No","year":"2019","author":[{"orcid":"0000-0001-8485-1774","last_name":"Fulek","id":"39F3FFE4-F248-11E8-B48F-1D18A9856A87","full_name":"Fulek, Radoslav","first_name":"Radoslav"},{"last_name":"Pach","full_name":"Pach, János","first_name":"János"}],"oa_version":"Preprint","arxiv":1,"quality_controlled":"1","month":"04","status":"public","title":"Thrackles: An improved upper bound","volume":259,"_id":"5857","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8"},{"citation":{"chicago":"Budanur, Nazmi B, and Marc Fleury. “State Space Geometry of the Chaotic Pilot-Wave Hydrodynamics.” <i>Chaos: An Interdisciplinary Journal of Nonlinear Science</i>. AIP Publishing, 2019. <a href=\"https://doi.org/10.1063/1.5058279\">https://doi.org/10.1063/1.5058279</a>.","ieee":"N. B. Budanur and M. Fleury, “State space geometry of the chaotic pilot-wave hydrodynamics,” <i>Chaos: An Interdisciplinary Journal of Nonlinear Science</i>, vol. 29, no. 1. AIP Publishing, 2019.","mla":"Budanur, Nazmi B., and Marc Fleury. “State Space Geometry of the Chaotic Pilot-Wave Hydrodynamics.” <i>Chaos: An Interdisciplinary Journal of Nonlinear Science</i>, vol. 29, no. 1, 013122, AIP Publishing, 2019, doi:<a href=\"https://doi.org/10.1063/1.5058279\">10.1063/1.5058279</a>.","ista":"Budanur NB, Fleury M. 2019. State space geometry of the chaotic pilot-wave hydrodynamics. Chaos: An Interdisciplinary Journal of Nonlinear Science. 29(1), 013122.","apa":"Budanur, N. B., &#38; Fleury, M. (2019). State space geometry of the chaotic pilot-wave hydrodynamics. <i>Chaos: An Interdisciplinary Journal of Nonlinear Science</i>. AIP Publishing. <a href=\"https://doi.org/10.1063/1.5058279\">https://doi.org/10.1063/1.5058279</a>","ama":"Budanur NB, Fleury M. State space geometry of the chaotic pilot-wave hydrodynamics. <i>Chaos: An Interdisciplinary Journal of Nonlinear Science</i>. 2019;29(1). doi:<a href=\"https://doi.org/10.1063/1.5058279\">10.1063/1.5058279</a>","short":"N.B. Budanur, M. Fleury, Chaos: An Interdisciplinary Journal of Nonlinear Science 29 (2019)."},"intvolume":"        29","isi":1,"publisher":"AIP Publishing","type":"journal_article","department":[{"_id":"BjHo"}],"date_created":"2019-01-23T08:35:09Z","publication":"Chaos: An Interdisciplinary Journal of Nonlinear Science","language":[{"iso":"eng"}],"oa":1,"date_published":"2019-01-22T00:00:00Z","doi":"10.1063/1.5058279","day":"22","article_number":"013122","publication_status":"published","article_type":"original","related_material":{"link":[{"relation":"erratum","url":"https://aip.scitation.org/doi/abs/10.1063/1.5097157"}]},"main_file_link":[{"url":"https://arxiv.org/abs/1812.09011","open_access":"1"}],"arxiv":1,"oa_version":"Preprint","year":"2019","author":[{"orcid":"0000-0003-0423-5010","last_name":"Budanur","id":"3EA1010E-F248-11E8-B48F-1D18A9856A87","full_name":"Budanur, Nazmi B","first_name":"Nazmi B"},{"first_name":"Marc","full_name":"Fleury, Marc","last_name":"Fleury"}],"article_processing_charge":"No","abstract":[{"lang":"eng","text":"We consider the motion of a droplet bouncing on a vibrating bath of the same fluid in the presence of a central potential. We formulate a rotation symmetry-reduced description of this system, which allows for the straightforward application of dynamical systems theory tools. As an illustration of the utility of the symmetry reduction, we apply it to a model of the pilot-wave system with a central harmonic force. We begin our analysis by identifying local bifurcations and the onset of chaos. We then describe the emergence of chaotic regions and their merging bifurcations, which lead to the formation of a global attractor. In this final regime, the droplet’s angular momentum spontaneously changes its sign as observed in the experiments of Perrard et al."}],"date_updated":"2023-08-25T10:16:11Z","external_id":{"arxiv":["1812.09011"],"isi":["000457409100028"]},"scopus_import":"1","issue":"1","publication_identifier":{"issn":["1054-1500"],"eissn":["1089-7682"]},"volume":29,"title":"State space geometry of the chaotic pilot-wave hydrodynamics","status":"public","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","_id":"5878","month":"01","quality_controlled":"1"},{"date_created":"2019-01-27T22:59:10Z","citation":{"mla":"Li, Xiang, et al. “Variational Approaches to Quantum Impurities: From the Fröhlich Polaron to the Angulon.” <i>Molecular Physics</i>, Taylor and Francis, 2019, doi:<a href=\"https://doi.org/10.1080/00268976.2019.1567852\">10.1080/00268976.2019.1567852</a>.","ista":"Li X, Bighin G, Yakaboylu E, Lemeshko M. 2019. Variational approaches to quantum impurities: from the Fröhlich polaron to the angulon. Molecular Physics.","chicago":"Li, Xiang, Giacomo Bighin, Enderalp Yakaboylu, and Mikhail Lemeshko. “Variational Approaches to Quantum Impurities: From the Fröhlich Polaron to the Angulon.” <i>Molecular Physics</i>. Taylor and Francis, 2019. <a href=\"https://doi.org/10.1080/00268976.2019.1567852\">https://doi.org/10.1080/00268976.2019.1567852</a>.","ieee":"X. Li, G. Bighin, E. Yakaboylu, and M. Lemeshko, “Variational approaches to quantum impurities: from the Fröhlich polaron to the angulon,” <i>Molecular Physics</i>. Taylor and Francis, 2019.","apa":"Li, X., Bighin, G., Yakaboylu, E., &#38; Lemeshko, M. (2019). Variational approaches to quantum impurities: from the Fröhlich polaron to the angulon. <i>Molecular Physics</i>. Taylor and Francis. <a href=\"https://doi.org/10.1080/00268976.2019.1567852\">https://doi.org/10.1080/00268976.2019.1567852</a>","short":"X. Li, G. Bighin, E. Yakaboylu, M. Lemeshko, Molecular Physics (2019).","ama":"Li X, Bighin G, Yakaboylu E, Lemeshko M. Variational approaches to quantum impurities: from the Fröhlich polaron to the angulon. <i>Molecular Physics</i>. 2019. doi:<a href=\"https://doi.org/10.1080/00268976.2019.1567852\">10.1080/00268976.2019.1567852</a>"},"publisher":"Taylor and Francis","isi":1,"department":[{"_id":"MiLe"}],"type":"journal_article","day":"18","publication_status":"published","publication":"Molecular Physics","project":[{"name":"Quantum rotations in the presence of a many-body environment","grant_number":"P29902","_id":"26031614-B435-11E9-9278-68D0E5697425","call_identifier":"FWF"},{"call_identifier":"FP7","name":"International IST Postdoc Fellowship Programme","_id":"25681D80-B435-11E9-9278-68D0E5697425","grant_number":"291734"}],"file_date_updated":"2020-07-14T12:47:13Z","file":[{"relation":"main_file","checksum":"178964744b636a6f036372f4f090a657","file_name":"2019_MolecularPhysics_Li.pdf","date_created":"2019-01-29T08:32:57Z","file_size":1309966,"content_type":"application/pdf","creator":"dernst","date_updated":"2020-07-14T12:47:13Z","access_level":"open_access","file_id":"5896"}],"language":[{"iso":"eng"}],"doi":"10.1080/00268976.2019.1567852","oa":1,"date_published":"2019-01-18T00:00:00Z","external_id":{"isi":["000474641400008"]},"scopus_import":"1","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"publication_identifier":{"issn":["0026-8976"]},"related_material":{"record":[{"status":"public","id":"8958","relation":"dissertation_contains"}]},"oa_version":"Published Version","has_accepted_license":"1","abstract":[{"text":"Problems involving quantum impurities, in which one or a few particles are interacting with a macroscopic environment, represent a pervasive paradigm, spanning across atomic, molecular, and condensed-matter physics. In this paper we introduce new variational approaches to quantum impurities and apply them to the Fröhlich polaron–a quasiparticle formed out of an electron (or other point-like impurity) in a polar medium, and to the angulon–a quasiparticle formed out of a rotating molecule in a bosonic bath. We benchmark these approaches against established theories, evaluating their accuracy as a function of the impurity-bath coupling.","lang":"eng"}],"ec_funded":1,"date_updated":"2025-07-10T11:53:06Z","year":"2019","author":[{"first_name":"Xiang","full_name":"Li, Xiang","id":"4B7E523C-F248-11E8-B48F-1D18A9856A87","last_name":"Li"},{"orcid":"0000-0001-8823-9777","last_name":"Bighin","first_name":"Giacomo","full_name":"Bighin, Giacomo","id":"4CA96FD4-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Yakaboylu","orcid":"0000-0001-5973-0874","id":"38CB71F6-F248-11E8-B48F-1D18A9856A87","first_name":"Enderalp","full_name":"Yakaboylu, Enderalp"},{"full_name":"Lemeshko, Mikhail","first_name":"Mikhail","id":"37CB05FA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6990-7802","last_name":"Lemeshko"}],"article_processing_charge":"No","quality_controlled":"1","month":"01","ddc":["530"],"title":"Variational approaches to quantum impurities: from the Fröhlich polaron to the angulon","status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"5886"},{"title":"Per-session security: Password-based cryptography revisited","volume":27,"status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"5887","quality_controlled":"1","month":"01","article_type":"original","main_file_link":[{"url":"https://eprint.iacr.org/2016/166","open_access":"1"}],"page":"75-111","oa_version":"Preprint","abstract":[{"lang":"eng","text":"Cryptographic security is usually defined as a guarantee that holds except when a bad event with negligible probability occurs, and nothing is guaranteed in that bad case. However, in settings where such failure can happen with substantial probability, one needs to provide guarantees even for the bad case. A typical example is where a (possibly weak) password is used instead of a secure cryptographic key to protect a session, the bad event being that the adversary correctly guesses the password. In a situation with multiple such sessions, a per-session guarantee is desired: any session for which the password has not been guessed remains secure, independently of whether other sessions have been compromised. A new formalism for stating such gracefully degrading security guarantees is introduced and applied to analyze the examples of password-based message authentication and password-based encryption. While a natural per-message guarantee is achieved for authentication, the situation of password-based encryption is more delicate: a per-session confidentiality guarantee only holds against attackers for which the distribution of password-guessing effort over the sessions is known in advance. In contrast, for more general attackers without such a restriction, a strong, composable notion of security cannot be achieved."}],"ec_funded":1,"date_updated":"2025-04-22T13:47:54Z","article_processing_charge":"No","author":[{"full_name":"Demay, Gregory","first_name":"Gregory","last_name":"Demay"},{"last_name":"Gazi","full_name":"Gazi, Peter","first_name":"Peter","id":"3E0BFE38-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Maurer","first_name":"Ueli","full_name":"Maurer, Ueli"},{"first_name":"Bjorn","full_name":"Tackmann, Bjorn","last_name":"Tackmann"}],"year":"2019","scopus_import":"1","issue":"1","publication_identifier":{"issn":["0926227X"]},"publication":"Journal of Computer Security","project":[{"call_identifier":"H2020","_id":"258AA5B2-B435-11E9-9278-68D0E5697425","grant_number":"682815","name":"Teaching Old Crypto New Tricks"}],"language":[{"iso":"eng"}],"doi":"10.3233/JCS-181131","date_published":"2019-01-01T00:00:00Z","oa":1,"day":"01","publication_status":"published","citation":{"mla":"Demay, Gregory, et al. “Per-Session Security: Password-Based Cryptography Revisited.” <i>Journal of Computer Security</i>, vol. 27, no. 1, IOS Press, 2019, pp. 75–111, doi:<a href=\"https://doi.org/10.3233/JCS-181131\">10.3233/JCS-181131</a>.","ista":"Demay G, Gazi P, Maurer U, Tackmann B. 2019. Per-session security: Password-based cryptography revisited. Journal of Computer Security. 27(1), 75–111.","chicago":"Demay, Gregory, Peter Gazi, Ueli Maurer, and Bjorn Tackmann. “Per-Session Security: Password-Based Cryptography Revisited.” <i>Journal of Computer Security</i>. IOS Press, 2019. <a href=\"https://doi.org/10.3233/JCS-181131\">https://doi.org/10.3233/JCS-181131</a>.","ieee":"G. Demay, P. Gazi, U. Maurer, and B. Tackmann, “Per-session security: Password-based cryptography revisited,” <i>Journal of Computer Security</i>, vol. 27, no. 1. IOS Press, pp. 75–111, 2019.","apa":"Demay, G., Gazi, P., Maurer, U., &#38; Tackmann, B. (2019). Per-session security: Password-based cryptography revisited. <i>Journal of Computer Security</i>. IOS Press. <a href=\"https://doi.org/10.3233/JCS-181131\">https://doi.org/10.3233/JCS-181131</a>","short":"G. Demay, P. Gazi, U. Maurer, B. Tackmann, Journal of Computer Security 27 (2019) 75–111.","ama":"Demay G, Gazi P, Maurer U, Tackmann B. Per-session security: Password-based cryptography revisited. <i>Journal of Computer Security</i>. 2019;27(1):75-111. doi:<a href=\"https://doi.org/10.3233/JCS-181131\">10.3233/JCS-181131</a>"},"publisher":"IOS Press","intvolume":"        27","type":"journal_article","department":[{"_id":"KrPi"}],"date_created":"2019-01-27T22:59:10Z"},{"arxiv":1,"oa_version":"Preprint","article_processing_charge":"No","year":"2019","author":[{"full_name":"Goremykina, Anna","first_name":"Anna","last_name":"Goremykina"},{"last_name":"Vasseur","first_name":"Romain","full_name":"Vasseur, Romain"},{"last_name":"Serbyn","orcid":"0000-0002-2399-5827","first_name":"Maksym","full_name":"Serbyn, Maksym","id":"47809E7E-F248-11E8-B48F-1D18A9856A87"}],"abstract":[{"lang":"eng","text":"We introduce a simple, exactly solvable strong-randomness renormalization group (RG) model for the many-body localization (MBL) transition in one dimension. Our approach relies on a family of RG flows parametrized by the asymmetry between thermal and localized phases. We identify the physical MBL transition in the limit of maximal asymmetry, reflecting the instability of MBL against rare thermal inclusions. We find a critical point that is localized with power-law distributed thermal inclusions. The typical size of critical inclusions remains finite at the transition, while the average size is logarithmically diverging. We propose a two-parameter scaling theory for the many-body localization transition that falls into the Kosterlitz-Thouless universality class, with the MBL phase corresponding to a stable line of fixed points with multifractal behavior."}],"date_updated":"2024-02-28T13:13:38Z","article_type":"original","main_file_link":[{"url":"https://arxiv.org/abs/1807.04285","open_access":"1"}],"scopus_import":"1","issue":"4","publication_identifier":{"issn":["0031-9007"],"eissn":["1079-7114"]},"external_id":{"isi":["000456783700001"],"arxiv":["1807.04285"]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"5906","volume":122,"title":"Analytically solvable renormalization group for the many-body localization transition","status":"public","month":"02","quality_controlled":"1","intvolume":"       122","isi":1,"publisher":"American Physical Society","type":"journal_article","department":[{"_id":"MaSe"}],"citation":{"chicago":"Goremykina, Anna, Romain Vasseur, and Maksym Serbyn. “Analytically Solvable Renormalization Group for the Many-Body Localization Transition.” <i>Physical Review Letters</i>. American Physical Society, 2019. <a href=\"https://doi.org/10.1103/physrevlett.122.040601\">https://doi.org/10.1103/physrevlett.122.040601</a>.","ieee":"A. Goremykina, R. Vasseur, and M. Serbyn, “Analytically solvable renormalization group for the many-body localization transition,” <i>Physical Review Letters</i>, vol. 122, no. 4. American Physical Society, 2019.","mla":"Goremykina, Anna, et al. “Analytically Solvable Renormalization Group for the Many-Body Localization Transition.” <i>Physical Review Letters</i>, vol. 122, no. 4, 040601, American Physical Society, 2019, doi:<a href=\"https://doi.org/10.1103/physrevlett.122.040601\">10.1103/physrevlett.122.040601</a>.","ista":"Goremykina A, Vasseur R, Serbyn M. 2019. Analytically solvable renormalization group for the many-body localization transition. Physical Review Letters. 122(4), 040601.","ama":"Goremykina A, Vasseur R, Serbyn M. Analytically solvable renormalization group for the many-body localization transition. <i>Physical Review Letters</i>. 2019;122(4). doi:<a href=\"https://doi.org/10.1103/physrevlett.122.040601\">10.1103/physrevlett.122.040601</a>","short":"A. Goremykina, R. Vasseur, M. Serbyn, Physical Review Letters 122 (2019).","apa":"Goremykina, A., Vasseur, R., &#38; Serbyn, M. (2019). Analytically solvable renormalization group for the many-body localization transition. <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/physrevlett.122.040601\">https://doi.org/10.1103/physrevlett.122.040601</a>"},"date_created":"2019-02-01T08:22:28Z","oa":1,"date_published":"2019-02-01T00:00:00Z","doi":"10.1103/physrevlett.122.040601","publication":"Physical Review Letters","language":[{"iso":"eng"}],"article_number":"040601","publication_status":"published","day":"01"},{"author":[{"full_name":"Mócsai, Réka","first_name":"Réka","last_name":"Mócsai"},{"first_name":"Rudolf","full_name":"Figl, Rudolf","last_name":"Figl"},{"full_name":"Troschl, Clemens","first_name":"Clemens","last_name":"Troschl"},{"last_name":"Strasser","full_name":"Strasser, Richard","first_name":"Richard"},{"first_name":"Elisabeth","full_name":"Svehla, Elisabeth","last_name":"Svehla"},{"first_name":"Markus","full_name":"Windwarder, Markus","last_name":"Windwarder"},{"id":"3A18A7B8-F248-11E8-B48F-1D18A9856A87","first_name":"Andreas","full_name":"Thader, Andreas","last_name":"Thader"},{"last_name":"Altmann","full_name":"Altmann, Friedrich","first_name":"Friedrich"}],"year":"2019","article_processing_charge":"No","date_updated":"2023-08-24T14:33:16Z","abstract":[{"text":"Microalgae of the genus Chlorella vulgaris are candidates for the production of lipids for biofuel production. Besides that, Chlorella vulgaris is marketed as protein and vitamin rich food additive. Its potential as a novel expression system for recombinant proteins inspired us to study its asparagine-linked oligosaccharides (N-glycans) by mass spectrometry, chromatography and gas chromatography. Oligomannosidic N-glycans with up to nine mannoses were the structures found in culture collection strains as well as several commercial products. These glycans co-eluted with plant N-glycans in the highly shape selective porous graphitic carbon chromatography. Thus, Chlorella vulgaris generates oligomannosidic N-glycans of the structural type known from land plants and animals. In fact, Man5 (Man5GlcNAc2) served as substrate for GlcNAc-transferase I and a trace of an endogenous structure with terminal GlcNAc was seen. The unusual more linear Man5 structure recently found on glycoproteins of Chlamydomonas reinhardtii occurred - if at all - in traces only. Notably, a majority of the oligomannosidic glycans was multiply O-methylated with 3-O-methyl and 3,6-di-O-methyl mannoses at the non-reducing termini. This modification has so far been neither found on plant nor vertebrate N-glycans. It’s possible immunogenicity raises concerns as to the use of C. vulgaris for production of pharmaceutical glycoproteins.","lang":"eng"}],"oa_version":"Published Version","has_accepted_license":"1","external_id":{"isi":["000456392400012"]},"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"issue":"1","scopus_import":"1","status":"public","volume":9,"title":"N-glycans of the microalga Chlorella vulgaris are of the oligomannosidic type but highly methylated","_id":"5907","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","ddc":["580"],"month":"01","quality_controlled":"1","citation":{"ama":"Mócsai R, Figl R, Troschl C, et al. N-glycans of the microalga Chlorella vulgaris are of the oligomannosidic type but highly methylated. <i>Scientific Reports</i>. 2019;9(1). doi:<a href=\"https://doi.org/10.1038/s41598-018-36884-1\">10.1038/s41598-018-36884-1</a>","short":"R. Mócsai, R. Figl, C. Troschl, R. Strasser, E. Svehla, M. Windwarder, A. Thader, F. Altmann, Scientific Reports 9 (2019).","apa":"Mócsai, R., Figl, R., Troschl, C., Strasser, R., Svehla, E., Windwarder, M., … Altmann, F. (2019). N-glycans of the microalga Chlorella vulgaris are of the oligomannosidic type but highly methylated. <i>Scientific Reports</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/s41598-018-36884-1\">https://doi.org/10.1038/s41598-018-36884-1</a>","ieee":"R. Mócsai <i>et al.</i>, “N-glycans of the microalga Chlorella vulgaris are of the oligomannosidic type but highly methylated,” <i>Scientific Reports</i>, vol. 9, no. 1. Nature Publishing Group, 2019.","chicago":"Mócsai, Réka, Rudolf Figl, Clemens Troschl, Richard Strasser, Elisabeth Svehla, Markus Windwarder, Andreas Thader, and Friedrich Altmann. “N-Glycans of the Microalga Chlorella Vulgaris Are of the Oligomannosidic Type but Highly Methylated.” <i>Scientific Reports</i>. Nature Publishing Group, 2019. <a href=\"https://doi.org/10.1038/s41598-018-36884-1\">https://doi.org/10.1038/s41598-018-36884-1</a>.","ista":"Mócsai R, Figl R, Troschl C, Strasser R, Svehla E, Windwarder M, Thader A, Altmann F. 2019. N-glycans of the microalga Chlorella vulgaris are of the oligomannosidic type but highly methylated. Scientific Reports. 9(1), 331.","mla":"Mócsai, Réka, et al. “N-Glycans of the Microalga Chlorella Vulgaris Are of the Oligomannosidic Type but Highly Methylated.” <i>Scientific Reports</i>, vol. 9, no. 1, 331, Nature Publishing Group, 2019, doi:<a href=\"https://doi.org/10.1038/s41598-018-36884-1\">10.1038/s41598-018-36884-1</a>."},"type":"journal_article","department":[{"_id":"FlSc"}],"intvolume":"         9","isi":1,"publisher":"Nature Publishing Group","date_created":"2019-02-03T22:59:13Z","language":[{"iso":"eng"}],"file":[{"file_id":"5923","date_updated":"2020-07-14T12:47:13Z","creator":"dernst","access_level":"open_access","date_created":"2019-02-05T13:10:02Z","file_size":2124292,"content_type":"application/pdf","checksum":"4129c7d7663d1f8a1edf8c4232372f66","relation":"main_file","file_name":"2019_ScientificReports_Mocsai.pdf"}],"file_date_updated":"2020-07-14T12:47:13Z","publication":"Scientific Reports","oa":1,"date_published":"2019-01-23T00:00:00Z","doi":"10.1038/s41598-018-36884-1","day":"23","publication_status":"published","article_number":"331"},{"abstract":[{"lang":"eng","text":"The interorganelle communication mediated by membrane contact sites (MCSs) is an evolutionary hallmark of eukaryotic cells. MCS connections enable the nonvesicular exchange of information between organelles and allow them to coordinate responses to changing cellular environments. In plants, the importance of MCS components in the responses to environmental stress has been widely established, but the molecular mechanisms regulating interorganelle connectivity during stress still remain opaque. In this report, we use the model plant Arabidopsis thaliana to show that ionic stress increases endoplasmic reticulum (ER)–plasma membrane (PM) connectivity by promoting the cortical expansion of synaptotagmin 1 (SYT1)-enriched ER–PM contact sites (S-EPCSs). We define differential roles for the cortical cytoskeleton in the regulation of S-EPCS dynamics and ER–PM connectivity, and we identify the accumulation of phosphatidylinositol 4,5-bisphosphate [PI(4,5)P2] at the PM as a molecular signal associated with the ER–PM connectivity changes. Our study highlights the functional conservation of EPCS components and PM phosphoinositides as modulators of ER–PM connectivity in eukaryotes, and uncovers unique aspects of the spatiotemporal regulation of ER–PM connectivity in plants."}],"date_updated":"2023-08-24T14:31:09Z","year":"2019","article_processing_charge":"No","author":[{"full_name":"Lee, Eunkyoung","first_name":"Eunkyoung","last_name":"Lee"},{"last_name":"Vanneste","first_name":"Steffen","full_name":"Vanneste, Steffen"},{"last_name":"Pérez-Sancho","first_name":"Jessica","full_name":"Pérez-Sancho, Jessica"},{"last_name":"Benitez-Fuente","first_name":"Francisco","full_name":"Benitez-Fuente, Francisco"},{"first_name":"Matthew","full_name":"Strelau, Matthew","last_name":"Strelau"},{"first_name":"Alberto P.","full_name":"Macho, Alberto P.","last_name":"Macho"},{"first_name":"Miguel A.","full_name":"Botella, Miguel A.","last_name":"Botella"},{"first_name":"Jiří","full_name":"Friml, Jiří","id":"4159519E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8302-7596","last_name":"Friml"},{"full_name":"Rosado, Abel","first_name":"Abel","last_name":"Rosado"}],"pmid":1,"oa_version":"Published Version","main_file_link":[{"url":"https://doi.org/10.1073/pnas.1818099116","open_access":"1"}],"page":"1420-1429","article_type":"original","issue":"4","scopus_import":"1","external_id":{"pmid":["30610176"],"isi":["000456336100050"]},"_id":"5908","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","status":"public","title":"Ionic stress enhances ER–PM connectivity via phosphoinositide-associated SYT1 contact site expansion in Arabidopsis","volume":116,"quality_controlled":"1","month":"01","type":"journal_article","department":[{"_id":"JiFr"}],"publisher":"National Academy of Sciences","isi":1,"intvolume":"       116","citation":{"short":"E. Lee, S. Vanneste, J. Pérez-Sancho, F. Benitez-Fuente, M. Strelau, A.P. Macho, M.A. Botella, J. Friml, A. Rosado, Proceedings of the National Academy of Sciences of the United States of America 116 (2019) 1420–1429.","ama":"Lee E, Vanneste S, Pérez-Sancho J, et al. Ionic stress enhances ER–PM connectivity via phosphoinositide-associated SYT1 contact site expansion in Arabidopsis. <i>Proceedings of the National Academy of Sciences of the United States of America</i>. 2019;116(4):1420-1429. doi:<a href=\"https://doi.org/10.1073/pnas.1818099116\">10.1073/pnas.1818099116</a>","apa":"Lee, E., Vanneste, S., Pérez-Sancho, J., Benitez-Fuente, F., Strelau, M., Macho, A. P., … Rosado, A. (2019). Ionic stress enhances ER–PM connectivity via phosphoinositide-associated SYT1 contact site expansion in Arabidopsis. <i>Proceedings of the National Academy of Sciences of the United States of America</i>. National Academy of Sciences. <a href=\"https://doi.org/10.1073/pnas.1818099116\">https://doi.org/10.1073/pnas.1818099116</a>","mla":"Lee, Eunkyoung, et al. “Ionic Stress Enhances ER–PM Connectivity via Phosphoinositide-Associated SYT1 Contact Site Expansion in Arabidopsis.” <i>Proceedings of the National Academy of Sciences of the United States of America</i>, vol. 116, no. 4, National Academy of Sciences, 2019, pp. 1420–29, doi:<a href=\"https://doi.org/10.1073/pnas.1818099116\">10.1073/pnas.1818099116</a>.","ista":"Lee E, Vanneste S, Pérez-Sancho J, Benitez-Fuente F, Strelau M, Macho AP, Botella MA, Friml J, Rosado A. 2019. Ionic stress enhances ER–PM connectivity via phosphoinositide-associated SYT1 contact site expansion in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. 116(4), 1420–1429.","chicago":"Lee, Eunkyoung, Steffen Vanneste, Jessica Pérez-Sancho, Francisco Benitez-Fuente, Matthew Strelau, Alberto P. Macho, Miguel A. Botella, Jiří Friml, and Abel Rosado. “Ionic Stress Enhances ER–PM Connectivity via Phosphoinositide-Associated SYT1 Contact Site Expansion in Arabidopsis.” <i>Proceedings of the National Academy of Sciences of the United States of America</i>. National Academy of Sciences, 2019. <a href=\"https://doi.org/10.1073/pnas.1818099116\">https://doi.org/10.1073/pnas.1818099116</a>.","ieee":"E. Lee <i>et al.</i>, “Ionic stress enhances ER–PM connectivity via phosphoinositide-associated SYT1 contact site expansion in Arabidopsis,” <i>Proceedings of the National Academy of Sciences of the United States of America</i>, vol. 116, no. 4. National Academy of Sciences, pp. 1420–1429, 2019."},"date_created":"2019-02-03T22:59:14Z","doi":"10.1073/pnas.1818099116","date_published":"2019-01-22T00:00:00Z","oa":1,"language":[{"iso":"eng"}],"publication":"Proceedings of the National Academy of Sciences of the United States of America","publication_status":"published","day":"22"},{"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","_id":"5911","volume":34,"title":"Evolving inversions","status":"public","ddc":["570"],"month":"03","quality_controlled":"1","oa_version":"Published Version","has_accepted_license":"1","article_processing_charge":"No","year":"2019","author":[{"last_name":"Faria","full_name":"Faria, Rui","first_name":"Rui"},{"full_name":"Johannesson, Kerstin","first_name":"Kerstin","last_name":"Johannesson"},{"last_name":"Butlin","first_name":"Roger K.","full_name":"Butlin, Roger K."},{"full_name":"Westram, Anja M","first_name":"Anja M","id":"3C147470-F248-11E8-B48F-1D18A9856A87","last_name":"Westram","orcid":"0000-0003-1050-4969"}],"date_updated":"2025-04-14T07:43:59Z","ec_funded":1,"abstract":[{"lang":"eng","text":"Empirical data suggest that inversions in many species contain genes important for intraspecific divergence and speciation, yet mechanisms of evolution remain unclear. While genes inside an inversion are tightly linked, inversions are not static but evolve separately from the rest of the genome by new mutations, recombination within arrangements, and gene flux between arrangements. Inversion polymorphisms are maintained by different processes, for example, divergent or balancing selection, or a mix of multiple processes. Moreover, the relative roles of selection, drift, mutation, and recombination will change over the lifetime of an inversion and within its area of distribution. We believe inversions are central to the evolution of many species, but we need many more data and new models to understand the complex mechanisms involved."}],"article_type":"original","page":"239-248","tmp":{"short":"CC BY-NC-ND (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","image":"/images/cc_by_nc_nd.png"},"issue":"3","scopus_import":"1","publication_identifier":{"issn":["01695347"]},"external_id":{"isi":["000459899000013"]},"oa":1,"date_published":"2019-03-01T00:00:00Z","doi":"10.1016/j.tree.2018.12.005","file_date_updated":"2020-07-14T12:47:13Z","project":[{"call_identifier":"H2020","name":"ISTplus - Postdoctoral Fellowships","_id":"260C2330-B435-11E9-9278-68D0E5697425","grant_number":"754411"}],"publication":"Trends in Ecology and Evolution","language":[{"iso":"eng"}],"file":[{"content_type":"application/pdf","date_created":"2020-01-09T10:55:58Z","file_size":1946795,"file_name":"2019_Trends_Evolution_Faria.pdf","checksum":"ef24572d6ebcc1452c067e05410cc4a2","relation":"main_file","file_id":"7245","access_level":"open_access","date_updated":"2020-07-14T12:47:13Z","creator":"cziletti"}],"publication_status":"published","day":"01","isi":1,"intvolume":"        34","publisher":"Elsevier","department":[{"_id":"NiBa"}],"type":"journal_article","citation":{"apa":"Faria, R., Johannesson, K., Butlin, R. K., &#38; Westram, A. M. (2019). Evolving inversions. <i>Trends in Ecology and Evolution</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.tree.2018.12.005\">https://doi.org/10.1016/j.tree.2018.12.005</a>","short":"R. Faria, K. Johannesson, R.K. Butlin, A.M. Westram, Trends in Ecology and Evolution 34 (2019) 239–248.","ama":"Faria R, Johannesson K, Butlin RK, Westram AM. Evolving inversions. <i>Trends in Ecology and Evolution</i>. 2019;34(3):239-248. doi:<a href=\"https://doi.org/10.1016/j.tree.2018.12.005\">10.1016/j.tree.2018.12.005</a>","mla":"Faria, Rui, et al. “Evolving Inversions.” <i>Trends in Ecology and Evolution</i>, vol. 34, no. 3, Elsevier, 2019, pp. 239–48, doi:<a href=\"https://doi.org/10.1016/j.tree.2018.12.005\">10.1016/j.tree.2018.12.005</a>.","ista":"Faria R, Johannesson K, Butlin RK, Westram AM. 2019. Evolving inversions. Trends in Ecology and Evolution. 34(3), 239–248.","ieee":"R. Faria, K. Johannesson, R. K. Butlin, and A. M. Westram, “Evolving inversions,” <i>Trends in Ecology and Evolution</i>, vol. 34, no. 3. Elsevier, pp. 239–248, 2019.","chicago":"Faria, Rui, Kerstin Johannesson, Roger K. Butlin, and Anja M Westram. “Evolving Inversions.” <i>Trends in Ecology and Evolution</i>. Elsevier, 2019. <a href=\"https://doi.org/10.1016/j.tree.2018.12.005\">https://doi.org/10.1016/j.tree.2018.12.005</a>."},"date_created":"2019-02-03T22:59:15Z"},{"publication_status":"published","day":"25","doi":"10.1017/jfm.2018.974","date_published":"2019-03-25T00:00:00Z","oa":1,"language":[{"iso":"eng"}],"publication":"Journal of Fluid Mechanics","project":[{"name":"ISTplus - Postdoctoral Fellowships","_id":"260C2330-B435-11E9-9278-68D0E5697425","grant_number":"754411","call_identifier":"H2020"}],"date_created":"2019-02-10T22:59:15Z","department":[{"_id":"BjHo"}],"type":"journal_article","publisher":"Cambridge University Press","intvolume":"       863","isi":1,"citation":{"apa":"Klotz, L., Gumowski, K., &#38; Wesfreid, J. E. (2019). Experiments on a jet in a crossflow in the low-velocity-ratio regime. <i>Journal of Fluid Mechanics</i>. Cambridge University Press. <a href=\"https://doi.org/10.1017/jfm.2018.974\">https://doi.org/10.1017/jfm.2018.974</a>","short":"L. Klotz, K. Gumowski, J.E. Wesfreid, Journal of Fluid Mechanics 863 (2019) 386–406.","ama":"Klotz L, Gumowski K, Wesfreid JE. Experiments on a jet in a crossflow in the low-velocity-ratio regime. <i>Journal of Fluid Mechanics</i>. 2019;863:386-406. doi:<a href=\"https://doi.org/10.1017/jfm.2018.974\">10.1017/jfm.2018.974</a>","ista":"Klotz L, Gumowski K, Wesfreid JE. 2019. Experiments on a jet in a crossflow in the low-velocity-ratio regime. Journal of Fluid Mechanics. 863, 386–406.","mla":"Klotz, Lukasz, et al. “Experiments on a Jet in a Crossflow in the Low-Velocity-Ratio Regime.” <i>Journal of Fluid Mechanics</i>, vol. 863, Cambridge University Press, 2019, pp. 386–406, doi:<a href=\"https://doi.org/10.1017/jfm.2018.974\">10.1017/jfm.2018.974</a>.","chicago":"Klotz, Lukasz, Konrad Gumowski, and José Eduardo Wesfreid. “Experiments on a Jet in a Crossflow in the Low-Velocity-Ratio Regime.” <i>Journal of Fluid Mechanics</i>. Cambridge University Press, 2019. <a href=\"https://doi.org/10.1017/jfm.2018.974\">https://doi.org/10.1017/jfm.2018.974</a>.","ieee":"L. Klotz, K. Gumowski, and J. E. Wesfreid, “Experiments on a jet in a crossflow in the low-velocity-ratio regime,” <i>Journal of Fluid Mechanics</i>, vol. 863. Cambridge University Press, pp. 386–406, 2019."},"quality_controlled":"1","month":"03","_id":"5943","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","status":"public","title":"Experiments on a jet in a crossflow in the low-velocity-ratio regime","volume":863,"scopus_import":"1","external_id":{"isi":["000526029100016"],"arxiv":["1902.07931"]},"date_updated":"2025-04-14T07:43:59Z","abstract":[{"lang":"eng","text":"The hairpin instability of a jet in a crossflow (JICF) for a low jet-to-crossflow velocity ratio is investigated experimentally for a velocity ratio range of R ∈ (0.14, 0.75) and crossflow Reynolds numbers ReD ∈ (260, 640). From spectral analysis we characterize the Strouhal number and amplitude of the hairpin instability as a function of R and ReD. We demonstrate that the dynamics of the hairpins is well described by the Landau model, and, hence, that the instability occurs through Hopf bifurcation, similarly to other hydrodynamical oscillators such as wake behind different bluff bodies. Using the Landau model, we determine the precise threshold values of hairpin shedding. We also study the spatial dependence of this hydrodynamical instability, which shows a global behaviour."}],"ec_funded":1,"author":[{"orcid":"0000-0003-1740-7635","last_name":"Klotz","id":"2C9AF1C2-F248-11E8-B48F-1D18A9856A87","first_name":"Lukasz","full_name":"Klotz, Lukasz"},{"full_name":"Gumowski, Konrad","first_name":"Konrad","last_name":"Gumowski"},{"full_name":"Wesfreid, José Eduardo","first_name":"José Eduardo","last_name":"Wesfreid"}],"year":"2019","article_processing_charge":"No","oa_version":"Preprint","arxiv":1,"main_file_link":[{"url":"https://arxiv.org/abs/1902.07931","open_access":"1"}],"page":"386-406","article_type":"original"},{"language":[{"iso":"eng"}],"publication":"Cell","project":[{"call_identifier":"FWF","grant_number":"P28844-B27","_id":"254E9036-B435-11E9-9278-68D0E5697425","name":"Biophysics of information processing in gene regulation"}],"oa":1,"date_published":"2019-02-07T00:00:00Z","doi":"10.1016/j.cell.2019.01.007","day":"07","publication_status":"published","citation":{"short":"M.D. Petkova, G. Tkačik, W. Bialek, E.F. Wieschaus, T. Gregor, Cell 176 (2019) 844–855.e15.","ama":"Petkova MD, Tkačik G, Bialek W, Wieschaus EF, Gregor T. Optimal decoding of cellular identities in a genetic network. <i>Cell</i>. 2019;176(4):844-855.e15. doi:<a href=\"https://doi.org/10.1016/j.cell.2019.01.007\">10.1016/j.cell.2019.01.007</a>","apa":"Petkova, M. D., Tkačik, G., Bialek, W., Wieschaus, E. F., &#38; Gregor, T. (2019). Optimal decoding of cellular identities in a genetic network. <i>Cell</i>. Cell Press. <a href=\"https://doi.org/10.1016/j.cell.2019.01.007\">https://doi.org/10.1016/j.cell.2019.01.007</a>","mla":"Petkova, Mariela D., et al. “Optimal Decoding of Cellular Identities in a Genetic Network.” <i>Cell</i>, vol. 176, no. 4, Cell Press, 2019, p. 844–855.e15, doi:<a href=\"https://doi.org/10.1016/j.cell.2019.01.007\">10.1016/j.cell.2019.01.007</a>.","ista":"Petkova MD, Tkačik G, Bialek W, Wieschaus EF, Gregor T. 2019. Optimal decoding of cellular identities in a genetic network. Cell. 176(4), 844–855.e15.","ieee":"M. D. Petkova, G. Tkačik, W. Bialek, E. F. Wieschaus, and T. Gregor, “Optimal decoding of cellular identities in a genetic network,” <i>Cell</i>, vol. 176, no. 4. Cell Press, p. 844–855.e15, 2019.","chicago":"Petkova, Mariela D., Gašper Tkačik, William Bialek, Eric F. Wieschaus, and Thomas Gregor. “Optimal Decoding of Cellular Identities in a Genetic Network.” <i>Cell</i>. Cell Press, 2019. <a href=\"https://doi.org/10.1016/j.cell.2019.01.007\">https://doi.org/10.1016/j.cell.2019.01.007</a>."},"department":[{"_id":"GaTk"}],"type":"journal_article","intvolume":"       176","isi":1,"publisher":"Cell Press","date_created":"2019-02-10T22:59:16Z","status":"public","volume":176,"title":"Optimal decoding of cellular identities in a genetic network","_id":"5945","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","month":"02","quality_controlled":"1","page":"844-855.e15","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1016/j.cell.2019.01.007"}],"related_material":{"link":[{"description":"News on IST Homepage","url":"https://ist.ac.at/en/news/cells-find-their-identity-using-a-mathematically-optimal-strategy/","relation":"press_release"}]},"article_type":"original","article_processing_charge":"No","author":[{"last_name":"Petkova","full_name":"Petkova, Mariela D.","first_name":"Mariela D."},{"orcid":"0000-0002-6699-1455","last_name":"Tkacik","full_name":"Tkacik, Gasper","first_name":"Gasper","id":"3D494DCA-F248-11E8-B48F-1D18A9856A87"},{"first_name":"William","full_name":"Bialek, William","last_name":"Bialek"},{"full_name":"Wieschaus, Eric F.","first_name":"Eric F.","last_name":"Wieschaus"},{"full_name":"Gregor, Thomas","first_name":"Thomas","last_name":"Gregor"}],"year":"2019","abstract":[{"text":"In developing organisms, spatially prescribed cell identities are thought to be determined by the expression levels of multiple genes. Quantitative tests of this idea, however, require a theoretical framework capable of exposing the rules and precision of cell specification over developmental time. We use the gap gene network in the early fly embryo as an example to show how expression levels of the four gap genes can be jointly decoded into an optimal specification of position with 1% accuracy. The decoder correctly predicts, with no free parameters, the dynamics of pair-rule expression patterns at different developmental time points and in various mutant backgrounds. Precise cellular identities are thus available at the earliest stages of development, contrasting the prevailing view of positional information being slowly refined across successive layers of the patterning network. Our results suggest that developmental enhancers closely approximate a mathematically optimal decoding strategy.","lang":"eng"}],"date_updated":"2025-04-14T09:28:43Z","oa_version":"Published Version","pmid":1,"external_id":{"isi":["000457969200015"],"pmid":["30712870"]},"scopus_import":"1","issue":"4"},{"arxiv":1,"oa_version":"Preprint","abstract":[{"lang":"eng","text":"Graph algorithms applied in many applications, including social networks, communication networks, VLSI design, graphics, and several others, require dynamic modifications - addition and removal of vertices and/or edges - in the graph. This paper presents a novel concurrent non-blocking algorithm to implement a dynamic unbounded directed graph in a shared-memory machine. The addition and removal operations of vertices and edges are lock-free. For a finite sized graph, the lookup operations are wait-free. Most significant component of the presented algorithm is the reachability query in a concurrent graph. The reachability queries in our algorithm are obstruction-free and thus impose minimal additional synchronization cost over other operations. We prove that each of the data structure operations are linearizable. We extensively evaluate a sample C/C++ implementation of the algorithm through a number of micro-benchmarks. The experimental results show that the proposed algorithm scales well with the number of threads and on an average provides 5 to 7x performance improvement over a concurrent graph implementation using coarse-grained locking."}],"date_updated":"2023-08-24T14:41:53Z","author":[{"orcid":"0000-0002-2742-4028","last_name":"Chatterjee","full_name":"Chatterjee, Bapi","first_name":"Bapi","id":"3C41A08A-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Sathya","full_name":"Peri, Sathya","last_name":"Peri"},{"last_name":"Sa","full_name":"Sa, Muktikanta","first_name":"Muktikanta"},{"first_name":"Nandini","full_name":"Singhal, Nandini","last_name":"Singhal"}],"article_processing_charge":"No","year":"2019","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1809.00896"}],"page":"168-177","scopus_import":"1","publication_identifier":{"isbn":["978-1-4503-6094-4 "]},"external_id":{"arxiv":["1809.00896"],"isi":["000484491600019"]},"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","_id":"5947","title":"A simple and practical concurrent non-blocking unbounded graph with linearizable reachability queries","status":"public","quality_controlled":"1","month":"01","publisher":"ACM","isi":1,"type":"conference","department":[{"_id":"DaAl"}],"citation":{"short":"B. Chatterjee, S. Peri, M. Sa, N. Singhal, in:, ACM International Conference Proceeding Series, ACM, 2019, pp. 168–177.","ama":"Chatterjee B, Peri S, Sa M, Singhal N. A simple and practical concurrent non-blocking unbounded graph with linearizable reachability queries. In: <i>ACM International Conference Proceeding Series</i>. ACM; 2019:168-177. doi:<a href=\"https://doi.org/10.1145/3288599.3288617\">10.1145/3288599.3288617</a>","apa":"Chatterjee, B., Peri, S., Sa, M., &#38; Singhal, N. (2019). A simple and practical concurrent non-blocking unbounded graph with linearizable reachability queries. In <i>ACM International Conference Proceeding Series</i> (pp. 168–177). Bangalore, India: ACM. <a href=\"https://doi.org/10.1145/3288599.3288617\">https://doi.org/10.1145/3288599.3288617</a>","mla":"Chatterjee, Bapi, et al. “A Simple and Practical Concurrent Non-Blocking Unbounded Graph with Linearizable Reachability Queries.” <i>ACM International Conference Proceeding Series</i>, ACM, 2019, pp. 168–77, doi:<a href=\"https://doi.org/10.1145/3288599.3288617\">10.1145/3288599.3288617</a>.","ista":"Chatterjee B, Peri S, Sa M, Singhal N. 2019. A simple and practical concurrent non-blocking unbounded graph with linearizable reachability queries. ACM International Conference Proceeding Series. ICDCN: Conference on Distributed Computing and Networking, 168–177.","ieee":"B. Chatterjee, S. Peri, M. Sa, and N. Singhal, “A simple and practical concurrent non-blocking unbounded graph with linearizable reachability queries,” in <i>ACM International Conference Proceeding Series</i>, Bangalore, India, 2019, pp. 168–177.","chicago":"Chatterjee, Bapi, Sathya Peri, Muktikanta Sa, and Nandini Singhal. “A Simple and Practical Concurrent Non-Blocking Unbounded Graph with Linearizable Reachability Queries.” In <i>ACM International Conference Proceeding Series</i>, 168–77. ACM, 2019. <a href=\"https://doi.org/10.1145/3288599.3288617\">https://doi.org/10.1145/3288599.3288617</a>."},"date_created":"2019-02-10T22:59:17Z","doi":"10.1145/3288599.3288617","oa":1,"conference":{"location":"Bangalore, India","name":"ICDCN: Conference on Distributed Computing and Networking","start_date":"2019-01-04","end_date":"2019-01-07"},"date_published":"2019-01-04T00:00:00Z","publication":"ACM International Conference Proceeding Series","language":[{"iso":"eng"}],"publication_status":"published","day":"04"},{"oa_version":"Preprint","arxiv":1,"date_updated":"2025-07-03T11:45:45Z","abstract":[{"lang":"eng","text":"We study the termination problem for nondeterministic probabilistic programs. We consider the bounded termination problem that asks whether the supremum of the expected termination time over all schedulers is bounded. First, we show that ranking supermartingales (RSMs) are both sound and complete for proving bounded termination over nondeterministic probabilistic programs. For nondeterministic probabilistic programs a previous result claimed that RSMs are not complete for bounded termination, whereas our result corrects the previous flaw and establishes completeness with a rigorous proof. Second, we present the first sound approach to establish lower bounds on expected termination time through RSMs."}],"article_processing_charge":"No","author":[{"first_name":"Hongfei","full_name":"Fu, Hongfei","last_name":"Fu"},{"orcid":"0000-0002-4561-241X","last_name":"Chatterjee","full_name":"Chatterjee, Krishnendu","first_name":"Krishnendu","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87"}],"year":"2019","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1701.02944"}],"page":"468-490","scopus_import":"1","external_id":{"isi":["000931943000022"],"arxiv":["1701.02944"]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"5948","title":"Termination of nondeterministic probabilistic programs","volume":11388,"status":"public","quality_controlled":"1","month":"01","OA_type":"green","publisher":"Springer Nature","intvolume":"     11388","isi":1,"department":[{"_id":"KrCh"}],"type":"conference","citation":{"ieee":"H. Fu and K. Chatterjee, “Termination of nondeterministic probabilistic programs,” in <i>International Conference on Verification, Model Checking, and Abstract Interpretation</i>, Cascais, Portugal, 2019, vol. 11388, pp. 468–490.","chicago":"Fu, Hongfei, and Krishnendu Chatterjee. “Termination of Nondeterministic Probabilistic Programs.” In <i>International Conference on Verification, Model Checking, and Abstract Interpretation</i>, 11388:468–90. Springer Nature, 2019. <a href=\"https://doi.org/10.1007/978-3-030-11245-5_22\">https://doi.org/10.1007/978-3-030-11245-5_22</a>.","mla":"Fu, Hongfei, and Krishnendu Chatterjee. “Termination of Nondeterministic Probabilistic Programs.” <i>International Conference on Verification, Model Checking, and Abstract Interpretation</i>, vol. 11388, Springer Nature, 2019, pp. 468–90, doi:<a href=\"https://doi.org/10.1007/978-3-030-11245-5_22\">10.1007/978-3-030-11245-5_22</a>.","ista":"Fu H, Chatterjee K. 2019. Termination of nondeterministic probabilistic programs. International Conference on Verification, Model Checking, and Abstract Interpretation. VMCAI: Verification, Model Checking, and Abstract Interpretation, LNCS, vol. 11388, 468–490.","ama":"Fu H, Chatterjee K. Termination of nondeterministic probabilistic programs. In: <i>International Conference on Verification, Model Checking, and Abstract Interpretation</i>. Vol 11388. Springer Nature; 2019:468-490. doi:<a href=\"https://doi.org/10.1007/978-3-030-11245-5_22\">10.1007/978-3-030-11245-5_22</a>","short":"H. Fu, K. Chatterjee, in:, International Conference on Verification, Model Checking, and Abstract Interpretation, Springer Nature, 2019, pp. 468–490.","apa":"Fu, H., &#38; Chatterjee, K. (2019). Termination of nondeterministic probabilistic programs. In <i>International Conference on Verification, Model Checking, and Abstract Interpretation</i> (Vol. 11388, pp. 468–490). Cascais, Portugal: Springer Nature. <a href=\"https://doi.org/10.1007/978-3-030-11245-5_22\">https://doi.org/10.1007/978-3-030-11245-5_22</a>"},"date_created":"2019-02-10T22:59:17Z","doi":"10.1007/978-3-030-11245-5_22","oa":1,"date_published":"2019-01-11T00:00:00Z","conference":{"name":"VMCAI: Verification, Model Checking, and Abstract Interpretation","location":"Cascais, Portugal","end_date":"2019-01-15","start_date":"2019-01-13"},"publication":"International Conference on Verification, Model Checking, and Abstract Interpretation","project":[{"grant_number":"ICT15-003","_id":"25892FC0-B435-11E9-9278-68D0E5697425","name":"Efficient Algorithms for Computer Aided Verification"},{"call_identifier":"FWF","_id":"25832EC2-B435-11E9-9278-68D0E5697425","grant_number":"S 11407_N23","name":"Rigorous Systems Engineering"}],"language":[{"iso":"eng"}],"OA_place":"repository","alternative_title":["LNCS"],"publication_status":"published","day":"11"},{"publication_status":"published","day":"01","doi":"10.1007/s00454-018-0035-8","oa":1,"date_published":"2019-06-01T00:00:00Z","file":[{"file_name":"2018_DiscreteGeometry_Lubiw.pdf","checksum":"e1bff88f1d77001b53b78c485ce048d7","relation":"main_file","content_type":"application/pdf","date_created":"2019-02-14T11:57:22Z","file_size":556276,"access_level":"open_access","creator":"dernst","date_updated":"2020-07-14T12:47:14Z","file_id":"5988"}],"language":[{"iso":"eng"}],"file_date_updated":"2020-07-14T12:47:14Z","publication":"Discrete & Computational Geometry","project":[{"name":"IST Austria Open Access Fund","_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854"}],"date_created":"2019-02-14T11:54:08Z","type":"journal_article","department":[{"_id":"UlWa"}],"publisher":"Springer Nature","intvolume":"        61","isi":1,"citation":{"apa":"Lubiw, A., Masárová, Z., &#38; Wagner, U. (2019). A proof of the orbit conjecture for flipping edge-labelled triangulations. <i>Discrete &#38; Computational Geometry</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s00454-018-0035-8\">https://doi.org/10.1007/s00454-018-0035-8</a>","short":"A. Lubiw, Z. Masárová, U. Wagner, Discrete &#38; Computational Geometry 61 (2019) 880–898.","ama":"Lubiw A, Masárová Z, Wagner U. A proof of the orbit conjecture for flipping edge-labelled triangulations. <i>Discrete &#38; Computational Geometry</i>. 2019;61(4):880-898. doi:<a href=\"https://doi.org/10.1007/s00454-018-0035-8\">10.1007/s00454-018-0035-8</a>","ista":"Lubiw A, Masárová Z, Wagner U. 2019. A proof of the orbit conjecture for flipping edge-labelled triangulations. Discrete &#38; Computational Geometry. 61(4), 880–898.","mla":"Lubiw, Anna, et al. “A Proof of the Orbit Conjecture for Flipping Edge-Labelled Triangulations.” <i>Discrete &#38; Computational Geometry</i>, vol. 61, no. 4, Springer Nature, 2019, pp. 880–98, doi:<a href=\"https://doi.org/10.1007/s00454-018-0035-8\">10.1007/s00454-018-0035-8</a>.","chicago":"Lubiw, Anna, Zuzana Masárová, and Uli Wagner. “A Proof of the Orbit Conjecture for Flipping Edge-Labelled Triangulations.” <i>Discrete &#38; Computational Geometry</i>. Springer Nature, 2019. <a href=\"https://doi.org/10.1007/s00454-018-0035-8\">https://doi.org/10.1007/s00454-018-0035-8</a>.","ieee":"A. Lubiw, Z. Masárová, and U. Wagner, “A proof of the orbit conjecture for flipping edge-labelled triangulations,” <i>Discrete &#38; Computational Geometry</i>, vol. 61, no. 4. Springer Nature, pp. 880–898, 2019."},"quality_controlled":"1","month":"06","ddc":["000"],"_id":"5986","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","status":"public","title":"A proof of the orbit conjecture for flipping edge-labelled triangulations","volume":61,"corr_author":"1","publication_identifier":{"eissn":["1432-0444"],"issn":["0179-5376"]},"issue":"4","scopus_import":"1","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"external_id":{"arxiv":["1710.02741"],"isi":["000466130000009"]},"date_updated":"2025-04-15T06:53:14Z","abstract":[{"lang":"eng","text":"Given a triangulation of a point set in the plane, a flip deletes an edge e whose removal leaves a convex quadrilateral, and replaces e by the opposite diagonal of the quadrilateral. It is well known that any triangulation of a point set can be reconfigured to any other triangulation by some sequence of flips. We explore this question in the setting where each edge of a triangulation has a label, and a flip transfers the label of the removed edge to the new edge. It is not true that every labelled triangulation of a point set can be reconfigured to every other labelled triangulation via a sequence of flips, but we characterize when this is possible. There is an obvious necessary condition: for each label l, if edge e has label l in the first triangulation and edge f has label l in the second triangulation, then there must be some sequence of flips that moves label l from e to f, ignoring all other labels. Bose, Lubiw, Pathak and Verdonschot formulated the Orbit Conjecture, which states that this necessary condition is also sufficient, i.e. that all labels can be simultaneously mapped to their destination if and only if each label individually can be mapped to its destination. We prove this conjecture. Furthermore, we give a polynomial-time algorithm (with 𝑂(𝑛8) being a crude bound on the run-time) to find a sequence of flips to reconfigure one labelled triangulation to another, if such a sequence exists, and we prove an upper bound of 𝑂(𝑛7) on the length of the flip sequence. Our proof uses the topological result that the sets of pairwise non-crossing edges on a planar point set form a simplicial complex that is homeomorphic to a high-dimensional ball (this follows from a result of Orden and Santos; we give a different proof based on a shelling argument). The dual cell complex of this simplicial ball, called the flip complex, has the usual flip graph as its 1-skeleton. We use properties of the 2-skeleton of the flip complex to prove the Orbit Conjecture."}],"article_processing_charge":"Yes (via OA deal)","author":[{"full_name":"Lubiw, Anna","first_name":"Anna","last_name":"Lubiw"},{"first_name":"Zuzana","full_name":"Masárová, Zuzana","id":"45CFE238-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6660-1322","last_name":"Masárová"},{"full_name":"Wagner, Uli","first_name":"Uli","id":"36690CA2-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-1494-0568","last_name":"Wagner"}],"year":"2019","has_accepted_license":"1","oa_version":"Published Version","arxiv":1,"related_material":{"record":[{"status":"public","relation":"earlier_version","id":"683"},{"status":"public","relation":"dissertation_contains","id":"7944"}]},"page":"880-898","article_type":"original"},{"file":[{"file_id":"6015","access_level":"open_access","creator":"dernst","date_updated":"2020-07-14T12:47:17Z","date_created":"2019-02-15T07:15:00Z","file_size":1331490,"content_type":"application/pdf","file_name":"2019_NatureComm_Varshney.pdf","relation":"main_file","checksum":"d3acf07eaad95ec040d8e8565fc9ac37"}],"language":[{"iso":"eng"}],"file_date_updated":"2020-07-14T12:47:17Z","publication":"Nature Communications","project":[{"call_identifier":"H2020","name":"ISTplus - Postdoctoral Fellowships","grant_number":"754411","_id":"260C2330-B435-11E9-9278-68D0E5697425"}],"doi":"10.1038/s41467-019-08551-0","oa":1,"date_published":"2019-02-08T00:00:00Z","day":"08","publication_status":"published","article_number":"652","citation":{"apa":"Varshney, A., &#38; Steinberg, V. (2019). Elastic alfven waves in elastic turbulence. <i>Nature Communications</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41467-019-08551-0\">https://doi.org/10.1038/s41467-019-08551-0</a>","ama":"Varshney A, Steinberg V. Elastic alfven waves in elastic turbulence. <i>Nature Communications</i>. 2019;10. doi:<a href=\"https://doi.org/10.1038/s41467-019-08551-0\">10.1038/s41467-019-08551-0</a>","short":"A. Varshney, V. Steinberg, Nature Communications 10 (2019).","chicago":"Varshney, Atul, and Victor Steinberg. “Elastic Alfven Waves in Elastic Turbulence.” <i>Nature Communications</i>. Springer Nature, 2019. <a href=\"https://doi.org/10.1038/s41467-019-08551-0\">https://doi.org/10.1038/s41467-019-08551-0</a>.","ieee":"A. Varshney and V. Steinberg, “Elastic alfven waves in elastic turbulence,” <i>Nature Communications</i>, vol. 10. Springer Nature, 2019.","ista":"Varshney A, Steinberg V. 2019. Elastic alfven waves in elastic turbulence. Nature Communications. 10, 652.","mla":"Varshney, Atul, and Victor Steinberg. “Elastic Alfven Waves in Elastic Turbulence.” <i>Nature Communications</i>, vol. 10, 652, Springer Nature, 2019, doi:<a href=\"https://doi.org/10.1038/s41467-019-08551-0\">10.1038/s41467-019-08551-0</a>."},"type":"journal_article","department":[{"_id":"BjHo"}],"publisher":"Springer Nature","isi":1,"intvolume":"        10","date_created":"2019-02-15T07:10:46Z","status":"public","title":"Elastic alfven waves in elastic turbulence","volume":10,"_id":"6014","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","quality_controlled":"1","month":"02","ddc":["530"],"article_type":"original","date_updated":"2025-04-14T07:43:46Z","abstract":[{"lang":"eng","text":"Speed of sound waves in gases and liquids are governed by the compressibility of the medium. There exists another type of non-dispersive wave where the wave speed depends on stress instead of elasticity of the medium. A well-known example is the Alfven wave, which propagates through plasma permeated by a magnetic field with the speed determined by magnetic tension. An elastic analogue of Alfven waves has been predicted in a flow of dilute polymer solution where the elastic stress of the stretching polymers determines the elastic wave speed. Here we present quantitative evidence of elastic Alfven waves in elastic turbulence of a viscoelastic creeping flow between two obstacles in channel flow. The key finding in the experimental proof is a nonlinear dependence of the elastic wave speed cel on the Weissenberg number Wi, which deviates from predictions based on a model of linear polymer elasticity."}],"ec_funded":1,"author":[{"orcid":"0000-0002-3072-5999","last_name":"Varshney","id":"2A2006B2-F248-11E8-B48F-1D18A9856A87","first_name":"Atul","full_name":"Varshney, Atul"},{"last_name":"Steinberg","first_name":"Victor","full_name":"Steinberg, Victor"}],"year":"2019","article_processing_charge":"No","pmid":1,"has_accepted_license":"1","oa_version":"Published Version","arxiv":1,"external_id":{"pmid":["30737403"],"isi":["000458175300001"],"arxiv":["1902.03763"]},"corr_author":"1","publication_identifier":{"issn":["2041-1723"]},"scopus_import":"1","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"}},{"publisher":"Public Library of Science","intvolume":"        17","isi":1,"department":[{"_id":"NiBa"}],"type":"journal_article","citation":{"ama":"Merrill RM, Rastas P, Martin SH, et al. Genetic dissection of assortative mating behavior. <i>PLoS Biology</i>. 2019;17(2). doi:<a href=\"https://doi.org/10.1371/journal.pbio.2005902\">10.1371/journal.pbio.2005902</a>","short":"R.M. Merrill, P. Rastas, S.H. Martin, M.C. Melo Hurtado, S. Barker, J. Davey, W.O. Mcmillan, C.D. Jiggins, PLoS Biology 17 (2019).","apa":"Merrill, R. M., Rastas, P., Martin, S. H., Melo Hurtado, M. C., Barker, S., Davey, J., … Jiggins, C. D. (2019). Genetic dissection of assortative mating behavior. <i>PLoS Biology</i>. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pbio.2005902\">https://doi.org/10.1371/journal.pbio.2005902</a>","chicago":"Merrill, Richard M., Pasi Rastas, Simon H. Martin, Maria C Melo Hurtado, Sarah Barker, John Davey, W. Owen Mcmillan, and Chris D. Jiggins. “Genetic Dissection of Assortative Mating Behavior.” <i>PLoS Biology</i>. Public Library of Science, 2019. <a href=\"https://doi.org/10.1371/journal.pbio.2005902\">https://doi.org/10.1371/journal.pbio.2005902</a>.","ieee":"R. M. Merrill <i>et al.</i>, “Genetic dissection of assortative mating behavior,” <i>PLoS Biology</i>, vol. 17, no. 2. Public Library of Science, 2019.","ista":"Merrill RM, Rastas P, Martin SH, Melo Hurtado MC, Barker S, Davey J, Mcmillan WO, Jiggins CD. 2019. Genetic dissection of assortative mating behavior. PLoS Biology. 17(2), e2005902.","mla":"Merrill, Richard M., et al. “Genetic Dissection of Assortative Mating Behavior.” <i>PLoS Biology</i>, vol. 17, no. 2, e2005902, Public Library of Science, 2019, doi:<a href=\"https://doi.org/10.1371/journal.pbio.2005902\">10.1371/journal.pbio.2005902</a>."},"date_created":"2019-02-17T22:59:21Z","doi":"10.1371/journal.pbio.2005902","oa":1,"date_published":"2019-02-07T00:00:00Z","publication":"PLoS Biology","file_date_updated":"2020-07-14T12:47:17Z","file":[{"relation":"main_file","checksum":"5f34001617ee729314ca520c049b1112","file_name":"2019_PLOS_Merrill.pdf","file_size":2005949,"date_created":"2019-02-18T14:57:24Z","content_type":"application/pdf","date_updated":"2020-07-14T12:47:17Z","creator":"dernst","access_level":"open_access","file_id":"6036"}],"language":[{"iso":"eng"}],"article_number":"e2005902","publication_status":"published","day":"07","has_accepted_license":"1","oa_version":"Published Version","abstract":[{"lang":"eng","text":"The evolution of new species is made easier when traits under divergent ecological selection are also mating cues. Such ecological mating cues are now considered more common than previously thought, but we still know little about the genetic changes underlying their evolution or more generally about the genetic basis for assortative mating behaviors. Both tight physical linkage and the existence of large-effect preference loci will strengthen genetic associations between behavioral and ecological barriers, promoting the evolution of assortative mating. The warning patterns of Heliconius melpomene and H. cydno are under disruptive selection due to increased predation of nonmimetic hybrids and are used during mate recognition. We carried out a genome-wide quantitative trait locus (QTL) analysis of preference behaviors between these species and showed that divergent male preference has a simple genetic basis. We identify three QTLs that together explain a large proportion (approximately 60%) of the difference in preference behavior observed between the parental species. One of these QTLs is just 1.2 (0-4.8) centiMorgans (cM) from the major color pattern gene optix, and, individually, all three have a large effect on the preference phenotype. Genomic divergence between H. cydno and H. melpomene is high but broadly heterogenous, and admixture is reduced at the preference-optix color pattern locus but not the other preference QTLs. The simple genetic architecture we reveal will facilitate the evolution and maintenance of new species despite ongoing gene flow by coupling behavioral and ecological aspects of reproductive isolation."}],"date_updated":"2023-08-24T14:46:23Z","year":"2019","article_processing_charge":"No","author":[{"full_name":"Merrill, Richard M.","first_name":"Richard M.","last_name":"Merrill"},{"first_name":"Pasi","full_name":"Rastas, Pasi","last_name":"Rastas"},{"first_name":"Simon H.","full_name":"Martin, Simon H.","last_name":"Martin"},{"last_name":"Melo Hurtado","first_name":"Maria C","full_name":"Melo Hurtado, Maria C","id":"386D7308-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Barker","first_name":"Sarah","full_name":"Barker, Sarah"},{"last_name":"Davey","full_name":"Davey, John","first_name":"John"},{"first_name":"W. Owen","full_name":"Mcmillan, W. Owen","last_name":"Mcmillan"},{"last_name":"Jiggins","first_name":"Chris D.","full_name":"Jiggins, Chris D."}],"license":"https://creativecommons.org/publicdomain/zero/1.0/","related_material":{"record":[{"relation":"research_data","id":"9801","status":"public"}]},"issue":"2","scopus_import":"1","tmp":{"short":"CC0 (1.0)","legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","name":"Creative Commons Public Domain Dedication (CC0 1.0)","image":"/images/cc_0.png"},"external_id":{"isi":["000460317100001"]},"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","_id":"6022","title":"Genetic dissection of assortative mating behavior","volume":17,"status":"public","quality_controlled":"1","month":"02","ddc":["570"]},{"oa_version":"Submitted Version","date_updated":"2025-04-15T06:50:24Z","abstract":[{"lang":"eng","text":"Multicellular development requires coordinated cell polarization relative to body axes, and translation to oriented cell division 1–3 . In plants, it is unknown how cell polarities are connected to organismal axes and translated to division. Here, we identify Arabidopsis SOSEKI proteins that integrate apical–basal and radial organismal axes to localize to polar cell edges. Localization does not depend on tissue context, requires cell wall integrity and is defined by a transferrable, protein-specific motif. A Domain of Unknown Function in SOSEKI proteins resembles the DIX oligomerization domain in the animal Dishevelled polarity regulator. The DIX-like domain self-interacts and is required for edge localization and for influencing division orientation, together with a second domain that defines the polar membrane domain. Our work shows that SOSEKI proteins locally interpret global polarity cues and can influence cell division orientation. Furthermore, this work reveals that, despite fundamental differences, cell polarity mechanisms in plants and animals converge on a similar protein domain."}],"ec_funded":1,"year":"2019","author":[{"last_name":"Yoshida","first_name":"Saiko","full_name":"Yoshida, Saiko","id":"2E46069C-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Van Der Schuren, Alja","first_name":"Alja","last_name":"Van Der Schuren"},{"first_name":"Maritza","full_name":"Van Dop, Maritza","last_name":"Van Dop"},{"last_name":"Van Galen","full_name":"Van Galen, Luc","first_name":"Luc"},{"last_name":"Saiga","first_name":"Shunsuke","full_name":"Saiga, Shunsuke"},{"last_name":"Adibi","full_name":"Adibi, Milad","first_name":"Milad"},{"first_name":"Barbara","full_name":"Möller, Barbara","last_name":"Möller"},{"full_name":"Ten Hove, Colette A.","first_name":"Colette A.","last_name":"Ten Hove"},{"orcid":"0000-0001-5227-5741","last_name":"Marhavy","id":"3F45B078-F248-11E8-B48F-1D18A9856A87","full_name":"Marhavy, Peter","first_name":"Peter"},{"last_name":"Smith","full_name":"Smith, Richard","first_name":"Richard"},{"full_name":"Friml, Jiří","first_name":"Jiří","id":"4159519E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8302-7596","last_name":"Friml"},{"first_name":"Dolf","full_name":"Weijers, Dolf","last_name":"Weijers"}],"article_processing_charge":"No","main_file_link":[{"open_access":"1","url":"https://www.biorxiv.org/content/10.1101/479113v1.abstract"}],"page":"160-166","scopus_import":"1","issue":"2","external_id":{"isi":["000460479600014"]},"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","_id":"6023","title":"A SOSEKI-based coordinate system interprets global polarity cues in arabidopsis","volume":5,"status":"public","quality_controlled":"1","month":"02","publisher":"Springer Nature","intvolume":"         5","isi":1,"department":[{"_id":"JiFr"},{"_id":"EvBe"}],"type":"journal_article","citation":{"chicago":"Yoshida, Saiko, Alja Van Der Schuren, Maritza Van Dop, Luc Van Galen, Shunsuke Saiga, Milad Adibi, Barbara Möller, et al. “A SOSEKI-Based Coordinate System Interprets Global Polarity Cues in Arabidopsis.” <i>Nature Plants</i>. Springer Nature, 2019. <a href=\"https://doi.org/10.1038/s41477-019-0363-6\">https://doi.org/10.1038/s41477-019-0363-6</a>.","ieee":"S. Yoshida <i>et al.</i>, “A SOSEKI-based coordinate system interprets global polarity cues in arabidopsis,” <i>Nature Plants</i>, vol. 5, no. 2. Springer Nature, pp. 160–166, 2019.","ista":"Yoshida S, Van Der Schuren A, Van Dop M, Van Galen L, Saiga S, Adibi M, Möller B, Ten Hove CA, Marhavý P, Smith R, Friml J, Weijers D. 2019. A SOSEKI-based coordinate system interprets global polarity cues in arabidopsis. Nature Plants. 5(2), 160–166.","mla":"Yoshida, Saiko, et al. “A SOSEKI-Based Coordinate System Interprets Global Polarity Cues in Arabidopsis.” <i>Nature Plants</i>, vol. 5, no. 2, Springer Nature, 2019, pp. 160–66, doi:<a href=\"https://doi.org/10.1038/s41477-019-0363-6\">10.1038/s41477-019-0363-6</a>.","apa":"Yoshida, S., Van Der Schuren, A., Van Dop, M., Van Galen, L., Saiga, S., Adibi, M., … Weijers, D. (2019). A SOSEKI-based coordinate system interprets global polarity cues in arabidopsis. <i>Nature Plants</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41477-019-0363-6\">https://doi.org/10.1038/s41477-019-0363-6</a>","ama":"Yoshida S, Van Der Schuren A, Van Dop M, et al. A SOSEKI-based coordinate system interprets global polarity cues in arabidopsis. <i>Nature Plants</i>. 2019;5(2):160-166. doi:<a href=\"https://doi.org/10.1038/s41477-019-0363-6\">10.1038/s41477-019-0363-6</a>","short":"S. Yoshida, A. Van Der Schuren, M. Van Dop, L. Van Galen, S. Saiga, M. Adibi, B. Möller, C.A. Ten Hove, P. Marhavý, R. Smith, J. Friml, D. Weijers, Nature Plants 5 (2019) 160–166."},"date_created":"2019-02-17T22:59:21Z","doi":"10.1038/s41477-019-0363-6","date_published":"2019-02-08T00:00:00Z","oa":1,"project":[{"_id":"25681D80-B435-11E9-9278-68D0E5697425","grant_number":"291734","name":"International IST Postdoc Fellowship Programme","call_identifier":"FP7"}],"publication":"Nature Plants","language":[{"iso":"eng"}],"publication_status":"published","day":"08"},{"citation":{"chicago":"Capek, Daniel, Michael Smutny, Alexandra Madelaine Tichy, Maurizio Morri, Harald L Janovjak, and Carl-Philipp J Heisenberg. “Light-Activated Frizzled7 Reveals a Permissive Role of Non-Canonical Wnt Signaling in Mesendoderm Cell Migration.” <i>ELife</i>. eLife Sciences Publications, 2019. <a href=\"https://doi.org/10.7554/eLife.42093\">https://doi.org/10.7554/eLife.42093</a>.","ieee":"D. Capek, M. Smutny, A. M. Tichy, M. Morri, H. L. Janovjak, and C.-P. J. Heisenberg, “Light-activated Frizzled7 reveals a permissive role of non-canonical wnt signaling in mesendoderm cell migration,” <i>eLife</i>, vol. 8. eLife Sciences Publications, 2019.","mla":"Capek, Daniel, et al. “Light-Activated Frizzled7 Reveals a Permissive Role of Non-Canonical Wnt Signaling in Mesendoderm Cell Migration.” <i>ELife</i>, vol. 8, e42093, eLife Sciences Publications, 2019, doi:<a href=\"https://doi.org/10.7554/eLife.42093\">10.7554/eLife.42093</a>.","ista":"Capek D, Smutny M, Tichy AM, Morri M, Janovjak HL, Heisenberg C-PJ. 2019. Light-activated Frizzled7 reveals a permissive role of non-canonical wnt signaling in mesendoderm cell migration. eLife. 8, e42093.","apa":"Capek, D., Smutny, M., Tichy, A. M., Morri, M., Janovjak, H. L., &#38; Heisenberg, C.-P. J. (2019). Light-activated Frizzled7 reveals a permissive role of non-canonical wnt signaling in mesendoderm cell migration. <i>ELife</i>. eLife Sciences Publications. <a href=\"https://doi.org/10.7554/eLife.42093\">https://doi.org/10.7554/eLife.42093</a>","ama":"Capek D, Smutny M, Tichy AM, Morri M, Janovjak HL, Heisenberg C-PJ. Light-activated Frizzled7 reveals a permissive role of non-canonical wnt signaling in mesendoderm cell migration. <i>eLife</i>. 2019;8. doi:<a href=\"https://doi.org/10.7554/eLife.42093\">10.7554/eLife.42093</a>","short":"D. Capek, M. Smutny, A.M. Tichy, M. Morri, H.L. Janovjak, C.-P.J. Heisenberg, ELife 8 (2019)."},"intvolume":"         8","isi":1,"publisher":"eLife Sciences Publications","department":[{"_id":"CaHe"},{"_id":"HaJa"}],"type":"journal_article","date_created":"2019-02-17T22:59:22Z","acknowledged_ssus":[{"_id":"Bio"},{"_id":"LifeSc"}],"publication":"eLife","project":[{"name":"Interaction and feedback between cell mechanics and fate specification in vertebrate gastrulation","grant_number":"742573","_id":"260F1432-B435-11E9-9278-68D0E5697425","call_identifier":"H2020"}],"file_date_updated":"2020-07-14T12:47:17Z","language":[{"iso":"eng"}],"file":[{"access_level":"open_access","date_updated":"2020-07-14T12:47:17Z","creator":"dernst","file_id":"6041","file_name":"2019_elife_Capek.pdf","checksum":"6cb4ca6d4aa96f6f187a5983aa3e660a","relation":"main_file","content_type":"application/pdf","date_created":"2019-02-18T15:17:21Z","file_size":5500707}],"oa":1,"date_published":"2019-02-06T00:00:00Z","doi":"10.7554/eLife.42093","day":"06","article_number":"e42093","publication_status":"published","oa_version":"Published Version","has_accepted_license":"1","author":[{"first_name":"Daniel","full_name":"Capek, Daniel","id":"31C42484-F248-11E8-B48F-1D18A9856A87","last_name":"Capek","orcid":"0000-0001-5199-9940"},{"last_name":"Smutny","orcid":"0000-0002-5920-9090","first_name":"Michael","full_name":"Smutny, Michael","id":"3FE6E4E8-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Alexandra Madelaine","full_name":"Tichy, Alexandra Madelaine","last_name":"Tichy"},{"last_name":"Morri","full_name":"Morri, Maurizio","first_name":"Maurizio","id":"4863116E-F248-11E8-B48F-1D18A9856A87"},{"id":"33BA6C30-F248-11E8-B48F-1D18A9856A87","full_name":"Janovjak, Harald L","first_name":"Harald L","orcid":"0000-0002-8023-9315","last_name":"Janovjak"},{"full_name":"Heisenberg, Carl-Philipp J","first_name":"Carl-Philipp J","id":"39427864-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-0912-4566","last_name":"Heisenberg"}],"article_processing_charge":"No","year":"2019","abstract":[{"lang":"eng","text":"Non-canonical Wnt signaling plays a central role for coordinated cell polarization and directed migration in metazoan development. While spatiotemporally restricted activation of non-canonical Wnt-signaling drives cell polarization in epithelial tissues, it remains unclear whether such instructive activity is also critical for directed mesenchymal cell migration. Here, we developed a light-activated version of the non-canonical Wnt receptor Frizzled 7 (Fz7) to analyze how restricted activation of non-canonical Wnt signaling affects directed anterior axial mesendoderm (prechordal plate, ppl) cell migration within the zebrafish gastrula. We found that Fz7 signaling is required for ppl cell protrusion formation and migration and that spatiotemporally restricted ectopic activation is capable of redirecting their migration. Finally, we show that uniform activation of Fz7 signaling in ppl cells fully rescues defective directed cell migration in fz7 mutant embryos. Together, our findings reveal that in contrast to the situation in epithelial cells, non-canonical Wnt signaling functions permissively rather than instructively in directed mesenchymal cell migration during gastrulation."}],"ec_funded":1,"date_updated":"2025-04-14T07:46:59Z","external_id":{"isi":["000458025300001"]},"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"scopus_import":"1","volume":8,"title":"Light-activated Frizzled7 reveals a permissive role of non-canonical wnt signaling in mesendoderm cell migration","status":"public","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","_id":"6025","month":"02","ddc":["570"],"quality_controlled":"1"}]