[{"status":"public","acknowledgement":"Long-term funding of monitoring and infrastructure at Hintereisferner is provided by the Federal State of Tirol (Department of Hydrography and Hydrology) and the University of Innsbruck. The field participation of A. R. Groos, T. Shaw, R. Mott-Grünewald, M. Haugeneder, and R. Albers received Transnational Access from the European Union’s H2020 project INTERACT III, under Grant Agreement 871120. The research of J. E. Sicart, H. Barral, C. Coulaud, and R. Biron was supported by a grant from LabEx OSUG@2020 (Investissements d’avenir—ANR10 LABX56). The research of I. Stiperski and C. Charrondiere received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation program (Grant Agreement 101001691). R. Mott acknowledges funding from the Swiss National Science Foundation (SNSF) Grant Agreement 200021_219918. Contributions of L. Nicholson, T. Sauter, and A. Giorgi were funded in whole or in part by a DFG-FWF WEAVE Grant (DFG Grant Agreement 543257843; FWF Grant-DOI 10.55776/PIN1775223). The Pléiades images/DEMs used in this study were provided by the Pléiades Glacier Observatory initiative of the French Space Agency (CNES) and Laboratoire d’Etudes en Géophysique et Océanographie Spatiales (LEGOS). We thank the residents of Rofen for patiently putting up with traffic and the noise and dust of helicopter rotations on Sundays and public holidays.","external_id":{"isi":["001608037100001"]},"author":[{"first_name":"Lindsey","full_name":"Nicholson, Lindsey","last_name":"Nicholson"},{"first_name":"Ivana","full_name":"Stiperski, Ivana","last_name":"Stiperski"},{"first_name":"Giordano","last_name":"Nitti","full_name":"Nitti, Giordano"},{"first_name":"Rainer","last_name":"Prinz","full_name":"Prinz, Rainer"},{"last_name":"Georgi","full_name":"Georgi, Alexander","first_name":"Alexander"},{"full_name":"Groos, Alexander R.","last_name":"Groos","first_name":"Alexander R."},{"first_name":"Thomas","id":"3caa3f91-1f03-11ee-96ce-e0e553054d6e","last_name":"Shaw","orcid":"0000-0001-7640-6152","full_name":"Shaw, Thomas"},{"first_name":"Tobias","full_name":"Sauter, Tobias","last_name":"Sauter"},{"last_name":"Haugeneder","full_name":"Haugeneder, Michael","first_name":"Michael"},{"full_name":"Mott, Rebecca","last_name":"Mott","first_name":"Rebecca"},{"first_name":"Jean Emmanuel","full_name":"Sicart, Jean Emmanuel","last_name":"Sicart"},{"full_name":"Brock, Ben W.","last_name":"Brock","first_name":"Ben W."},{"first_name":"Roland","last_name":"Albers","full_name":"Albers, Roland"},{"first_name":"Balthazar","full_name":"Allegri, Balthazar","last_name":"Allegri"},{"first_name":"Hélène","last_name":"Barral","full_name":"Barral, Hélène"},{"full_name":"Biron, Romain","last_name":"Biron","first_name":"Romain"},{"first_name":"Claudine","full_name":"Charrondiere, Claudine","last_name":"Charrondiere"},{"last_name":"Coulaud","full_name":"Coulaud, Catherine","first_name":"Catherine"},{"first_name":"Alexander","full_name":"Fischer, Alexander","last_name":"Fischer"},{"full_name":"Reynolds, Dylan","last_name":"Reynolds","first_name":"Dylan"},{"last_name":"Richter","full_name":"Richter, Niklas","first_name":"Niklas"},{"last_name":"Schroeder","full_name":"Schroeder, Marie","first_name":"Marie"},{"first_name":"Phillip","last_name":"Vettori","full_name":"Vettori, Phillip"},{"full_name":"Voordendag, Annelies","last_name":"Voordendag","first_name":"Annelies"},{"full_name":"Wydra, Carlos","last_name":"Wydra","first_name":"Carlos"}],"volume":106,"file":[{"date_updated":"2025-12-01T08:08:34Z","creator":"dernst","file_id":"20716","relation":"main_file","success":1,"file_name":"2025_BulletinMeteorolSoc_Nicholson.pdf","file_size":3565187,"checksum":"5883fc6a9e499b9dbd9828e4993e5035","access_level":"open_access","content_type":"application/pdf","date_created":"2025-12-01T08:08:34Z"}],"date_published":"2025-10-01T00:00:00Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","issue":"10","language":[{"iso":"eng"}],"page":"E2143-E2169","publication":"Bulletin of the American Meteorological Society","year":"2025","day":"01","scopus_import":"1","quality_controlled":"1","date_created":"2025-11-30T23:02:08Z","citation":{"ieee":"L. Nicholson <i>et al.</i>, “The second Hintereisferner experiment (HEFEX II): Initial insights into boundary layer structure and surface–atmosphere exchange processes from intensive observations at a valley glacier,” <i>Bulletin of the American Meteorological Society</i>, vol. 106, no. 10. American Meteorological Society, pp. E2143–E2169, 2025.","short":"L. Nicholson, I. Stiperski, G. Nitti, R. Prinz, A. Georgi, A.R. Groos, T. Shaw, T. Sauter, M. Haugeneder, R. Mott, J.E. Sicart, B.W. Brock, R. Albers, B. Allegri, H. Barral, R. Biron, C. Charrondiere, C. Coulaud, A. Fischer, D. Reynolds, N. Richter, M. Schroeder, P. Vettori, A. Voordendag, C. Wydra, Bulletin of the American Meteorological Society 106 (2025) E2143–E2169.","ama":"Nicholson L, Stiperski I, Nitti G, et al. The second Hintereisferner experiment (HEFEX II): Initial insights into boundary layer structure and surface–atmosphere exchange processes from intensive observations at a valley glacier. <i>Bulletin of the American Meteorological Society</i>. 2025;106(10):E2143-E2169. doi:<a href=\"https://doi.org/10.1175/BAMS-D-24-0010.1\">10.1175/BAMS-D-24-0010.1</a>","mla":"Nicholson, Lindsey, et al. “The Second Hintereisferner Experiment (HEFEX II): Initial Insights into Boundary Layer Structure and Surface–Atmosphere Exchange Processes from Intensive Observations at a Valley Glacier.” <i>Bulletin of the American Meteorological Society</i>, vol. 106, no. 10, American Meteorological Society, 2025, pp. E2143–69, doi:<a href=\"https://doi.org/10.1175/BAMS-D-24-0010.1\">10.1175/BAMS-D-24-0010.1</a>.","apa":"Nicholson, L., Stiperski, I., Nitti, G., Prinz, R., Georgi, A., Groos, A. R., … Wydra, C. (2025). The second Hintereisferner experiment (HEFEX II): Initial insights into boundary layer structure and surface–atmosphere exchange processes from intensive observations at a valley glacier. <i>Bulletin of the American Meteorological Society</i>. American Meteorological Society. <a href=\"https://doi.org/10.1175/BAMS-D-24-0010.1\">https://doi.org/10.1175/BAMS-D-24-0010.1</a>","chicago":"Nicholson, Lindsey, Ivana Stiperski, Giordano Nitti, Rainer Prinz, Alexander Georgi, Alexander R. Groos, Thomas Shaw, et al. “The Second Hintereisferner Experiment (HEFEX II): Initial Insights into Boundary Layer Structure and Surface–Atmosphere Exchange Processes from Intensive Observations at a Valley Glacier.” <i>Bulletin of the American Meteorological Society</i>. American Meteorological Society, 2025. <a href=\"https://doi.org/10.1175/BAMS-D-24-0010.1\">https://doi.org/10.1175/BAMS-D-24-0010.1</a>.","ista":"Nicholson L, Stiperski I, Nitti G, Prinz R, Georgi A, Groos AR, Shaw T, Sauter T, Haugeneder M, Mott R, Sicart JE, Brock BW, Albers R, Allegri B, Barral H, Biron R, Charrondiere C, Coulaud C, Fischer A, Reynolds D, Richter N, Schroeder M, Vettori P, Voordendag A, Wydra C. 2025. The second Hintereisferner experiment (HEFEX II): Initial insights into boundary layer structure and surface–atmosphere exchange processes from intensive observations at a valley glacier. Bulletin of the American Meteorological Society. 106(10), E2143–E2169."},"doi":"10.1175/BAMS-D-24-0010.1","intvolume":"       106","file_date_updated":"2025-12-01T08:08:34Z","oa":1,"abstract":[{"text":"Mountain glaciers offer opportunities to observe boundary layer exchanges in conditions characterized by predominantly stable stratification, thermally driven winds, and varying surface roughness. Logistical challenges involved in instrumenting glacier surfaces mean that in situ observations remain relatively scarce, limiting the use of this outdoor laboratory. The second Hintereisferner Experiment (HEFEX II) was carried out on an Austrian Alpine glacier during summer 2023. This collaborative endeavor, involving 12 institutions from Austria, France, Germany, Switzerland, and the United Kingdom, represents an unprecedented set of observations of glacier microclimate. Instrumentation on the glacier surface consisted of eight 3-m and two 5-m weather stations equipped with multilevel eddy covariance systems and auxiliary instrumentation, and eight additional lower-specification weather stations. These operated successfully for 26 days with minimal data gaps. During a 3-day intensive observational period, additional instrumentation was deployed: a short-path ultrasonic anemometer installed very close to the glacier surface; a high-speed thermal camera capturing high-resolution boundary layer heat transport at the glacier centerline on a synthetic screen; 3D sampling of the glacier boundary layer using two meteorological UAVs; and a Streamline XR Doppler lidar capturing the structure of the above-valley atmosphere. These novel datasets are valuable for improving understanding of glacier–atmosphere exchange processes, the role of glaciers in valley circulation, and how both might be affected by continued climate change and glacier recession. Here, we detail the scientific goals and implementation of the campaign, describe the general weather conditions, and present first insights into what the observations reveal about the glacier boundary layer features observed during the campaign.","lang":"eng"}],"license":"https://creativecommons.org/licenses/by/4.0/","ddc":["550"],"has_accepted_license":"1","article_processing_charge":"Yes (in subscription journal)","PlanS_conform":"1","OA_type":"hybrid","article_type":"original","month":"10","oa_version":"Published Version","publisher":"American Meteorological Society","type":"journal_article","publication_status":"published","publication_identifier":{"eissn":["1520-0477"],"issn":["0003-0007"]},"isi":1,"OA_place":"publisher","_id":"20710","title":"The second Hintereisferner experiment (HEFEX II): Initial insights into boundary layer structure and surface–atmosphere exchange processes from intensive observations at a valley glacier","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"department":[{"_id":"FrPe"}],"date_updated":"2025-12-01T15:36:06Z"},{"status":"public","acknowledgement":"This project was funded in part by the Austrian Science Fund (FWF) SFB project SpyCoDe F8502 and by the ERC-2020-AdG 101020093.","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_published":"2025-10-02T00:00:00Z","volume":15471,"author":[{"first_name":"Ezio","last_name":"Bartocci","full_name":"Bartocci, Ezio"},{"id":"40876CD8-F248-11E8-B48F-1D18A9856A87","last_name":"Henzinger","full_name":"Henzinger, Thomas A","orcid":"0000-0002-2985-7724","first_name":"Thomas A"},{"full_name":"Nickovic, Dejan","id":"41BCEE5C-F248-11E8-B48F-1D18A9856A87","last_name":"Nickovic","first_name":"Dejan"},{"last_name":"Oliveira da Costa","id":"f347ec37-6676-11ee-b395-a888cb7b4fb4","orcid":"0000-0002-8741-5799","full_name":"Oliveira da Costa, Ana","first_name":"Ana"}],"external_id":{"arxiv":["2406.14374"]},"language":[{"iso":"eng"}],"page":"251-263","publication":"Engineering Safe and Trustworthy Cyber Physical Systems","year":"2025","citation":{"ista":"Bartocci E, Henzinger TA, Nickovic D, Oliveira da Costa A. 2025.Information-Flow Interfaces and Security Lattices. In: Engineering Safe and Trustworthy Cyber Physical Systems. LNCS, vol. 15471, 251–263.","chicago":"Bartocci, Ezio, Thomas A Henzinger, Dejan Nickovic, and Ana Oliveira da Costa. “Information-Flow Interfaces and Security Lattices.” In <i>Engineering Safe and Trustworthy Cyber Physical Systems</i>, 15471:251–63. Cham: Springer Nature, 2025. <a href=\"https://doi.org/10.1007/978-3-031-97537-0_15\">https://doi.org/10.1007/978-3-031-97537-0_15</a>.","apa":"Bartocci, E., Henzinger, T. A., Nickovic, D., &#38; Oliveira da Costa, A. (2025). Information-Flow Interfaces and Security Lattices. In <i>Engineering Safe and Trustworthy Cyber Physical Systems</i> (Vol. 15471, pp. 251–263). Cham: Springer Nature. <a href=\"https://doi.org/10.1007/978-3-031-97537-0_15\">https://doi.org/10.1007/978-3-031-97537-0_15</a>","mla":"Bartocci, Ezio, et al. “Information-Flow Interfaces and Security Lattices.” <i>Engineering Safe and Trustworthy Cyber Physical Systems</i>, vol. 15471, Springer Nature, 2025, pp. 251–63, doi:<a href=\"https://doi.org/10.1007/978-3-031-97537-0_15\">10.1007/978-3-031-97537-0_15</a>.","ama":"Bartocci E, Henzinger TA, Nickovic D, Oliveira da Costa A. Information-Flow Interfaces and Security Lattices. In: <i>Engineering Safe and Trustworthy Cyber Physical Systems</i>. Vol 15471. Cham: Springer Nature; 2025:251-263. doi:<a href=\"https://doi.org/10.1007/978-3-031-97537-0_15\">10.1007/978-3-031-97537-0_15</a>","ieee":"E. Bartocci, T. A. Henzinger, D. Nickovic, and A. Oliveira da Costa, “Information-Flow Interfaces and Security Lattices,” in <i>Engineering Safe and Trustworthy Cyber Physical Systems</i>, vol. 15471, Cham: Springer Nature, 2025, pp. 251–263.","short":"E. Bartocci, T.A. Henzinger, D. Nickovic, A. Oliveira da Costa, in:, Engineering Safe and Trustworthy Cyber Physical Systems, Springer Nature, Cham, 2025, pp. 251–263."},"date_created":"2025-12-01T15:44:58Z","quality_controlled":"1","scopus_import":"1","corr_author":"1","day":"02","alternative_title":["LNCS"],"intvolume":"     15471","doi":"10.1007/978-3-031-97537-0_15","abstract":[{"lang":"eng","text":"Information-flow interfaces is a formalism recently proposed for specifying, composing, and refining system-wide security requirements. In this work, we show how the widely used concept of security lattices provides a natural semantic interpretation for information-flow interfaces."}],"oa":1,"article_processing_charge":"No","place":"Cham","OA_type":"green","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2406.14374"}],"project":[{"name":"Interface Theory for Security and Privacy","grant_number":"F8502","_id":"34a1b658-11ca-11ed-8bc3-c75229f0241e"},{"call_identifier":"H2020","grant_number":"101020093","name":"Vigilant Algorithmic Monitoring of Software","_id":"62781420-2b32-11ec-9570-8d9b63373d4d"}],"month":"10","arxiv":1,"type":"book_chapter","publisher":"Springer Nature","publication_status":"published","oa_version":"Preprint","OA_place":"repository","publication_identifier":{"eissn":["1611-3349"],"isbn":["9783031975363"],"issn":["0302-9743"],"eisbn":["9783031975370"]},"_id":"20723","ec_funded":1,"department":[{"_id":"ToHe"}],"title":"Information-Flow Interfaces and Security Lattices","date_updated":"2025-12-09T07:57:55Z"},{"month":"11","project":[{"_id":"8f347782-16d5-11f0-9cad-8c19706ee739","grant_number":"101142681","name":"Cyclic nucleotides as second messengers in plants"},{"grant_number":"P37051","name":"Guanylate cyclase activity of TIR1/AFBs auxin receptors","_id":"7bcece63-9f16-11ee-852c-ae94e099eeb6"}],"article_type":"review","OA_type":"hybrid","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1016/j.tplants.2025.10.018"}],"PlanS_conform":"1","publisher":"Elsevier","publication_status":"epub_ahead","type":"journal_article","oa_version":"Published Version","_id":"20725","pmid":1,"OA_place":"publisher","publication_identifier":{"eissn":["1878-4372"],"issn":["1360-1385"]},"date_updated":"2025-12-09T08:04:58Z","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"title":"Role of cAMP in TIR1/AFB auxin signaling: Open issues","department":[{"_id":"JiFr"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_published":"2025-11-16T00:00:00Z","author":[{"first_name":"Jiří","orcid":"0000-0002-8302-7596","full_name":"Friml, Jiří","id":"4159519E-F248-11E8-B48F-1D18A9856A87","last_name":"Friml"}],"external_id":{"pmid":["41249070"]},"status":"public","acknowledgement":"I apologize to colleagues whose relevant work I was unable to cite due to space limitations. This work was funded by the European Union (ERC, CYNIPS, 101142681) and Austrian Science Fund (FWF; 37051-B). I thank Drs Huihuang Chen, Yuanrong Pei, Jason Reed, Linlin Qi, and Dolf Weijers for inspiration and critical input.","year":"2025","page":"S1360-1385(25)00300-0","publication":"Trends in Plant Science","language":[{"iso":"eng"}],"doi":"10.1016/j.tplants.2025.10.018","date_created":"2025-12-02T16:29:22Z","citation":{"ieee":"J. Friml, “Role of cAMP in TIR1/AFB auxin signaling: Open issues,” <i>Trends in Plant Science</i>. Elsevier, pp. S1360-1385(25)00300–0, 2025.","short":"J. Friml, Trends in Plant Science (2025) S1360-1385(25)00300–0.","ama":"Friml J. Role of cAMP in TIR1/AFB auxin signaling: Open issues. <i>Trends in Plant Science</i>. 2025:S1360-1385(25)00300-0. doi:<a href=\"https://doi.org/10.1016/j.tplants.2025.10.018\">10.1016/j.tplants.2025.10.018</a>","ista":"Friml J. 2025. Role of cAMP in TIR1/AFB auxin signaling: Open issues. Trends in Plant Science., S1360-1385(25)00300–0.","mla":"Friml, Jiří. “Role of CAMP in TIR1/AFB Auxin Signaling: Open Issues.” <i>Trends in Plant Science</i>, Elsevier, 2025, pp. S1360-1385(25)00300-0, doi:<a href=\"https://doi.org/10.1016/j.tplants.2025.10.018\">10.1016/j.tplants.2025.10.018</a>.","apa":"Friml, J. (2025). Role of cAMP in TIR1/AFB auxin signaling: Open issues. <i>Trends in Plant Science</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.tplants.2025.10.018\">https://doi.org/10.1016/j.tplants.2025.10.018</a>","chicago":"Friml, Jiří. “Role of CAMP in TIR1/AFB Auxin Signaling: Open Issues.” <i>Trends in Plant Science</i>. Elsevier, 2025. <a href=\"https://doi.org/10.1016/j.tplants.2025.10.018\">https://doi.org/10.1016/j.tplants.2025.10.018</a>."},"scopus_import":"1","day":"16","corr_author":"1","article_processing_charge":"Yes (via OA deal)","has_accepted_license":"1","ddc":["580"],"abstract":[{"lang":"eng","text":"The canonical mechanism by which the phytohormone auxin regulates transcription has been one of the cornerstones of plant signaling. The recent unexpected discovery of cyclic AMP (cAMP) as a second messenger in this pathway has revised its foundations while leaving many open questions and gaps in our understanding; these will be discussed in this forum article."}],"oa":1},{"quality_controlled":"1","citation":{"ama":"Kneib M, Maussion F, Brun F, et al. Topographically-controlled contribution of avalanches to glacier mass balance in the 21st century. <i>Nature Communications</i>. 2025;16. doi:<a href=\"https://doi.org/10.1038/s41467-025-65608-z\">10.1038/s41467-025-65608-z</a>","ieee":"M. Kneib <i>et al.</i>, “Topographically-controlled contribution of avalanches to glacier mass balance in the 21st century,” <i>Nature Communications</i>, vol. 16. Springer Nature, 2025.","short":"M. Kneib, F. Maussion, F. Brun, G. Carcanade, D. Farinotti, M. Huss, M. Van Tiel, A. Jouberton, P. Schmitt, L. Schuster, A. Dehecq, N. Champollion, Nature Communications 16 (2025).","apa":"Kneib, M., Maussion, F., Brun, F., Carcanade, G., Farinotti, D., Huss, M., … Champollion, N. (2025). Topographically-controlled contribution of avalanches to glacier mass balance in the 21st century. <i>Nature Communications</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41467-025-65608-z\">https://doi.org/10.1038/s41467-025-65608-z</a>","chicago":"Kneib, Marin, Fabien Maussion, Fanny Brun, Guillem Carcanade, Daniel Farinotti, Matthias Huss, Marit Van Tiel, et al. “Topographically-Controlled Contribution of Avalanches to Glacier Mass Balance in the 21st Century.” <i>Nature Communications</i>. Springer Nature, 2025. <a href=\"https://doi.org/10.1038/s41467-025-65608-z\">https://doi.org/10.1038/s41467-025-65608-z</a>.","mla":"Kneib, Marin, et al. “Topographically-Controlled Contribution of Avalanches to Glacier Mass Balance in the 21st Century.” <i>Nature Communications</i>, vol. 16, 10122, Springer Nature, 2025, doi:<a href=\"https://doi.org/10.1038/s41467-025-65608-z\">10.1038/s41467-025-65608-z</a>.","ista":"Kneib M, Maussion F, Brun F, Carcanade G, Farinotti D, Huss M, Van Tiel M, Jouberton A, Schmitt P, Schuster L, Dehecq A, Champollion N. 2025. Topographically-controlled contribution of avalanches to glacier mass balance in the 21st century. Nature Communications. 16, 10122."},"date_created":"2025-12-07T23:02:00Z","scopus_import":"1","day":"01","intvolume":"        16","doi":"10.1038/s41467-025-65608-z","abstract":[{"text":"Glaciers are often located in steep mountain settings and avalanches from surrounding slopes can strongly influence snow accumulation patterns on their surface. This effect has however never been quantified for more than a few glaciers and the impact on the future evolution of glaciers is unclear. We coupled an avalanche and a glacier model to estimate the contribution of avalanches to the accumulation of all glaciers in the world and how this affects their evolution throughout the 21st century. Globally, 3% of the snow accumulation on glaciers comes from avalanches and 1% is removed by avalanches. This net contribution varies between regions and glaciers, with a maximum of 15% for New Zealand. Accounting for avalanches modifies the altitudinal pattern of glacier mass balance and the projected evolution of individual glaciers. The main effects include (1) a longer persistence of small glaciers, with for example three times more ice retained by glaciers smaller than 1 km2 in Central Europe under a low-emission scenario, and (2) an increased sensitivity of high-elevation accumulation zones to future warming. We anticipate the relative influence of avalanches to increase in the future and advocate for a better monitoring of this process and representation in glacier models.","lang":"eng"}],"ddc":["550"],"oa":1,"file_date_updated":"2025-12-09T12:37:14Z","article_number":"10122","article_processing_charge":"Yes","DOAJ_listed":"1","has_accepted_license":"1","status":"public","acknowledgement":"This project has received funding from the Swiss National Science Foundation (SNSF) under the Postdoc. Mobility programme, grant agreement P500PN_210739, CAIRN (MK), “Contribution of avalanches to glacier mass balance”, and grant agreement P5R5PN_225605, CAIRN-GLOBAL (MK), “Contribution of avalanches to glacier mass balance at the global scale”. The authors would like to acknowledge the OGGM community for the extensive online documentation, data resources (OGGM-shop) and computing infrastructure that were used as part of this study.","date_published":"2025-12-01T00:00:00Z","file":[{"file_name":"2025_NatureComm_Kneib.pdf","success":1,"file_size":2749558,"checksum":"5d8e420caa8259b67801f7c87e318d2e","date_created":"2025-12-09T12:37:14Z","content_type":"application/pdf","access_level":"open_access","date_updated":"2025-12-09T12:37:14Z","file_id":"20740","creator":"dernst","relation":"main_file"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","volume":16,"external_id":{"pmid":["41298449"]},"author":[{"first_name":"Marin","full_name":"Kneib, Marin","last_name":"Kneib"},{"first_name":"Fabien","full_name":"Maussion, Fabien","last_name":"Maussion"},{"first_name":"Fanny","last_name":"Brun","full_name":"Brun, Fanny"},{"first_name":"Guillem","full_name":"Carcanade, Guillem","last_name":"Carcanade"},{"last_name":"Farinotti","full_name":"Farinotti, Daniel","first_name":"Daniel"},{"first_name":"Matthias","full_name":"Huss, Matthias","last_name":"Huss"},{"first_name":"Marit","last_name":"Van Tiel","full_name":"Van Tiel, Marit"},{"full_name":"Jouberton, Achille","id":"f2426a39-920b-11f0-ac40-cbeda2086b9c","last_name":"Jouberton","first_name":"Achille"},{"last_name":"Schmitt","full_name":"Schmitt, Patrick","first_name":"Patrick"},{"first_name":"Lilian","last_name":"Schuster","full_name":"Schuster, Lilian"},{"first_name":"Amaury","full_name":"Dehecq, Amaury","last_name":"Dehecq"},{"last_name":"Champollion","full_name":"Champollion, Nicolas","first_name":"Nicolas"}],"language":[{"iso":"eng"}],"publication":"Nature Communications","year":"2025","OA_place":"publisher","publication_identifier":{"eissn":["2041-1723"]},"_id":"20728","pmid":1,"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"title":"Topographically-controlled contribution of avalanches to glacier mass balance in the 21st century","department":[{"_id":"FrPe"}],"date_updated":"2025-12-09T12:38:44Z","OA_type":"gold","PlanS_conform":"1","month":"12","article_type":"original","publisher":"Springer Nature","type":"journal_article","publication_status":"published","oa_version":"Published Version"},{"file_date_updated":"2025-12-09T13:43:17Z","oa":1,"ddc":["510"],"abstract":[{"lang":"eng","text":"Persistence modules (defined as a sequence of vector spaces and linear maps between them) are a key tool in topological data analysis. They are easy to interpret and fast to compute. However, when considering persistence maps (i.e. maps between persistence modules), these properties are lost. We propose a new invariant for persistence maps consisting of a partial matching such that: it is easy to interpret, it is more discriminative than the image of the persistence map, and can be calculated with cubical complexity."}],"has_accepted_license":"1","article_processing_charge":"Yes (in subscription journal)","conference":{"location":"Guanajuato, Mexico","name":"ISSAC: International Symposium on Symbolic and Algebraic Computation","end_date":"2025-08-01","start_date":"2025-07-28"},"corr_author":"1","day":"10","scopus_import":"1","quality_controlled":"1","citation":{"short":"R. Gonzalez-Diaz, M. Soriano Trigueros, A. Torras-Casas, in:, Proceedings of the 2025 International Symposium on Symbolic and Algebraic Computation, Association for Computing Machinery, 2025, pp. 188–196.","ieee":"R. Gonzalez-Diaz, M. Soriano Trigueros, and A. Torras-Casas, “Additive partial matchings for persistent homology,” in <i>Proceedings of the 2025 International Symposium on Symbolic and Algebraic Computation</i>, Guanajuato, Mexico, 2025, pp. 188–196.","ama":"Gonzalez-Diaz R, Soriano Trigueros M, Torras-Casas A. Additive partial matchings for persistent homology. In: <i>Proceedings of the 2025 International Symposium on Symbolic and Algebraic Computation</i>. Association for Computing Machinery; 2025:188-196. doi:<a href=\"https://doi.org/10.1145/3747199.3747561\">10.1145/3747199.3747561</a>","chicago":"Gonzalez-Diaz, Rocio, Manuel Soriano Trigueros, and Alvaro Torras-Casas. “Additive Partial Matchings for Persistent Homology.” In <i>Proceedings of the 2025 International Symposium on Symbolic and Algebraic Computation</i>, 188–96. Association for Computing Machinery, 2025. <a href=\"https://doi.org/10.1145/3747199.3747561\">https://doi.org/10.1145/3747199.3747561</a>.","apa":"Gonzalez-Diaz, R., Soriano Trigueros, M., &#38; Torras-Casas, A. (2025). Additive partial matchings for persistent homology. In <i>Proceedings of the 2025 International Symposium on Symbolic and Algebraic Computation</i> (pp. 188–196). Guanajuato, Mexico: Association for Computing Machinery. <a href=\"https://doi.org/10.1145/3747199.3747561\">https://doi.org/10.1145/3747199.3747561</a>","mla":"Gonzalez-Diaz, Rocio, et al. “Additive Partial Matchings for Persistent Homology.” <i>Proceedings of the 2025 International Symposium on Symbolic and Algebraic Computation</i>, Association for Computing Machinery, 2025, pp. 188–96, doi:<a href=\"https://doi.org/10.1145/3747199.3747561\">10.1145/3747199.3747561</a>.","ista":"Gonzalez-Diaz R, Soriano Trigueros M, Torras-Casas A. 2025. Additive partial matchings for persistent homology. Proceedings of the 2025 International Symposium on Symbolic and Algebraic Computation. ISSAC: International Symposium on Symbolic and Algebraic Computation, 188–196."},"date_created":"2025-12-07T23:02:01Z","doi":"10.1145/3747199.3747561","page":"188-196","language":[{"iso":"eng"}],"publication":"Proceedings of the 2025 International Symposium on Symbolic and Algebraic Computation","year":"2025","acknowledgement":"Álvaro Torras-Casas contract is funded by the French Agence Nationale de la Recherche through the project reference ANR-22-CPJ1-0047-01. Rocio Gonzalez-Diaz is partially funded by the European Union under grant agreement no. 101070028-2 (REXASI-PRO).","status":"public","author":[{"first_name":"Rocio","full_name":"Gonzalez-Diaz, Rocio","last_name":"Gonzalez-Diaz"},{"last_name":"Soriano Trigueros","id":"15ebd7cf-15bf-11ee-aebd-bb4bb5121ea8","full_name":"Soriano Trigueros, Manuel","orcid":"0000-0003-2449-1433","first_name":"Manuel"},{"first_name":"Alvaro","last_name":"Torras-Casas","full_name":"Torras-Casas, Alvaro"}],"file":[{"date_created":"2025-12-09T13:43:17Z","access_level":"open_access","content_type":"application/pdf","checksum":"1c299cca165a20e2518afe4fda63dbf1","file_size":761617,"file_name":"2025_ISSAC_GonzalezDiaz.pdf","success":1,"relation":"main_file","file_id":"20751","creator":"dernst","date_updated":"2025-12-09T13:43:17Z"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_published":"2025-11-10T00:00:00Z","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"title":"Additive partial matchings for persistent homology","department":[{"_id":"HeEd"}],"date_updated":"2025-12-09T13:46:42Z","publication_identifier":{"isbn":["9798400720758"]},"OA_place":"publisher","_id":"20729","oa_version":"Published Version","type":"conference","publisher":"Association for Computing Machinery","publication_status":"published","OA_type":"hybrid","month":"11"},{"issue":"5","language":[{"iso":"eng"}],"publication":"Physical Review Applied","year":"2025","status":"public","acknowledgement":"We thank Nicholas Sim for providing help with the rf cavities and David Craig for his feedback on the paper. This work was supported by the Royal Society (URF-R1-191150), the EPSRC National Quantum Technology Hub in Networked Quantum Information Technology (EP/M013243/1), Quantum Technology Capital (EP/N014995/1), EPSRC Platform Grant (EP/R029229/1), the European Research Council (Grant Agreement 948932), the Scientific Service Units of IST Austria through resources provided by the nanofabrication facility, the FWF-P 30207, and FWF-I 05060 projects, and Grant No. FQXi-IAF19-01 from the Foundational Questions Institute Fund, a donor-advised fund of Silicon Valley Community Foundation.","volume":24,"author":[{"first_name":"Barnaby","last_name":"Van Straaten","full_name":"Van Straaten, Barnaby"},{"last_name":"Fedele","full_name":"Fedele, Federico","first_name":"Federico"},{"last_name":"Vigneau","full_name":"Vigneau, Florian","first_name":"Florian"},{"first_name":"Joseph","full_name":"Hickie, Joseph","last_name":"Hickie"},{"first_name":"Daniel","full_name":"Jirovec, Daniel","orcid":"0000-0002-7197-4801","last_name":"Jirovec","id":"4C473F58-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Ballabio, Andrea","last_name":"Ballabio","first_name":"Andrea"},{"first_name":"Daniel","full_name":"Chrastina, Daniel","last_name":"Chrastina"},{"full_name":"Isella, Giovanni","last_name":"Isella","first_name":"Giovanni"},{"first_name":"Georgios","full_name":"Katsaros, Georgios","orcid":"0000-0001-8342-202X","id":"38DB5788-F248-11E8-B48F-1D18A9856A87","last_name":"Katsaros"},{"first_name":"Natalia","full_name":"Ares, Natalia","last_name":"Ares"}],"date_published":"2025-11-01T00:00:00Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file":[{"date_updated":"2025-12-09T13:34:38Z","relation":"main_file","file_id":"20748","creator":"dernst","file_size":5754118,"file_name":"2025_PhysReviewApplied_vanStraaten.pdf","success":1,"date_created":"2025-12-09T13:34:38Z","access_level":"open_access","content_type":"application/pdf","checksum":"9906b32c7e3c79ed13d05ef88ff15586"}],"oa":1,"file_date_updated":"2025-12-09T13:34:38Z","ddc":["530"],"abstract":[{"lang":"eng","text":"Radio-frequency measurements could satisfy DiVincenzo’s readout criterion in future large-scale solid-state quantum processors, as they allow for high bandwidths and frequency multiplexing. However, the scalability potential of this readout technique can only be leveraged if quantum device tuning is performed using exclusively radio-frequency measurements, that is, without resorting to current measurements. We demonstrate an algorithm that performs automatic coarse tuning of double quantum dots with only radio-frequency measurements by exploiting their bandwidth and impedance matching. The tuning was completed within a few minutes with minimal prior knowledge about the device. Our results show that it is possible to eliminate the need for transport measurements for quantum-dot tuning, paving the way for more scalable device architectures."}],"has_accepted_license":"1","article_number":"054030","article_processing_charge":"Yes (in subscription journal)","day":"01","quality_controlled":"1","date_created":"2025-12-07T23:02:01Z","citation":{"ama":"Van Straaten B, Fedele F, Vigneau F, et al. All-rf-based coarse-tuning algorithm for quantum devices using machine learning. <i>Physical Review Applied</i>. 2025;24(5). doi:<a href=\"https://doi.org/10.1103/v11m-dbhm\">10.1103/v11m-dbhm</a>","short":"B. Van Straaten, F. Fedele, F. Vigneau, J. Hickie, D. Jirovec, A. Ballabio, D. Chrastina, G. Isella, G. Katsaros, N. Ares, Physical Review Applied 24 (2025).","ieee":"B. Van Straaten <i>et al.</i>, “All-rf-based coarse-tuning algorithm for quantum devices using machine learning,” <i>Physical Review Applied</i>, vol. 24, no. 5. American Physical Society, 2025.","ista":"Van Straaten B, Fedele F, Vigneau F, Hickie J, Jirovec D, Ballabio A, Chrastina D, Isella G, Katsaros G, Ares N. 2025. All-rf-based coarse-tuning algorithm for quantum devices using machine learning. Physical Review Applied. 24(5), 054030.","chicago":"Van Straaten, Barnaby, Federico Fedele, Florian Vigneau, Joseph Hickie, Daniel Jirovec, Andrea Ballabio, Daniel Chrastina, Giovanni Isella, Georgios Katsaros, and Natalia Ares. “All-Rf-Based Coarse-Tuning Algorithm for Quantum Devices Using Machine Learning.” <i>Physical Review Applied</i>. American Physical Society, 2025. <a href=\"https://doi.org/10.1103/v11m-dbhm\">https://doi.org/10.1103/v11m-dbhm</a>.","apa":"Van Straaten, B., Fedele, F., Vigneau, F., Hickie, J., Jirovec, D., Ballabio, A., … Ares, N. (2025). All-rf-based coarse-tuning algorithm for quantum devices using machine learning. <i>Physical Review Applied</i>. American Physical Society. <a href=\"https://doi.org/10.1103/v11m-dbhm\">https://doi.org/10.1103/v11m-dbhm</a>","mla":"Van Straaten, Barnaby, et al. “All-Rf-Based Coarse-Tuning Algorithm for Quantum Devices Using Machine Learning.” <i>Physical Review Applied</i>, vol. 24, no. 5, 054030, American Physical Society, 2025, doi:<a href=\"https://doi.org/10.1103/v11m-dbhm\">10.1103/v11m-dbhm</a>."},"scopus_import":"1","doi":"10.1103/v11m-dbhm","related_material":{"record":[{"relation":"research_data","status":"public","id":"20750"}]},"intvolume":"        24","oa_version":"Published Version","type":"journal_article","publisher":"American Physical Society","publication_status":"published","OA_type":"hybrid","PlanS_conform":"1","article_type":"original","project":[{"name":"Hole spin orbit qubits in Ge quantum wells","call_identifier":"FWF","grant_number":"P30207","_id":"2641CE5E-B435-11E9-9278-68D0E5697425"},{"grant_number":"I05060","name":"High impedance circuit quantum electrodynamics with hole spins","_id":"c0977eea-5a5b-11eb-8a69-a862db0cf4d1"}],"month":"11","title":"All-rf-based coarse-tuning algorithm for quantum devices using machine learning","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"department":[{"_id":"GeKa"}],"date_updated":"2025-12-09T14:49:35Z","publication_identifier":{"eissn":["2331-7019"]},"OA_place":"publisher","acknowledged_ssus":[{"_id":"NanoFab"}],"_id":"20730"},{"_id":"20731","pmid":1,"OA_place":"publisher","publication_identifier":{"eissn":["1545-2948"],"issn":["0066-4197"]},"date_updated":"2025-12-09T12:55:11Z","department":[{"_id":"GaNo"}],"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"title":"Fueling the mind: Brain metabolism in health and neurodevelopmental disorders","project":[{"name":"Reducing the impact of major environmental challenges on mental health","grant_number":"101057429","_id":"349d1832-11ca-11ed-8bc3-d79b574010e0"}],"month":"11","article_type":"review","OA_type":"hybrid","PlanS_conform":"1","publication_status":"published","type":"journal_article","publisher":"Annual Reviews","oa_version":"Published Version","intvolume":"        59","doi":"10.1146/annurev-genet-111523-102424","quality_controlled":"1","citation":{"ama":"Marano D, Mariano V, Novarino G. Fueling the mind: Brain metabolism in health and neurodevelopmental disorders. <i>Annual Review of Genetics</i>. 2025;59:415-434. doi:<a href=\"https://doi.org/10.1146/annurev-genet-111523-102424\">10.1146/annurev-genet-111523-102424</a>","short":"D. Marano, V. Mariano, G. Novarino, Annual Review of Genetics 59 (2025) 415–434.","ieee":"D. Marano, V. Mariano, and G. Novarino, “Fueling the mind: Brain metabolism in health and neurodevelopmental disorders,” <i>Annual Review of Genetics</i>, vol. 59. Annual Reviews, pp. 415–434, 2025.","ista":"Marano D, Mariano V, Novarino G. 2025. Fueling the mind: Brain metabolism in health and neurodevelopmental disorders. Annual Review of Genetics. 59, 415–434.","chicago":"Marano, Domenico, Vittoria Mariano, and Gaia Novarino. “Fueling the Mind: Brain Metabolism in Health and Neurodevelopmental Disorders.” <i>Annual Review of Genetics</i>. Annual Reviews, 2025. <a href=\"https://doi.org/10.1146/annurev-genet-111523-102424\">https://doi.org/10.1146/annurev-genet-111523-102424</a>.","mla":"Marano, Domenico, et al. “Fueling the Mind: Brain Metabolism in Health and Neurodevelopmental Disorders.” <i>Annual Review of Genetics</i>, vol. 59, Annual Reviews, 2025, pp. 415–34, doi:<a href=\"https://doi.org/10.1146/annurev-genet-111523-102424\">10.1146/annurev-genet-111523-102424</a>.","apa":"Marano, D., Mariano, V., &#38; Novarino, G. (2025). Fueling the mind: Brain metabolism in health and neurodevelopmental disorders. <i>Annual Review of Genetics</i>. Annual Reviews. <a href=\"https://doi.org/10.1146/annurev-genet-111523-102424\">https://doi.org/10.1146/annurev-genet-111523-102424</a>"},"date_created":"2025-12-07T23:02:01Z","scopus_import":"1","corr_author":"1","day":"03","article_processing_charge":"Yes (in subscription journal)","has_accepted_license":"1","ddc":["570"],"abstract":[{"lang":"eng","text":"The adult human brain, under resting conditions, consumes approximately 20% of total body glucose, a demand that is even higher during the first decade of life. The brain metabolic landscape is intricately regulated throughout development, and each cell type exhibits distinct metabolic signatures at each specific stage. This picture becomes even more intricate when considering that metabolism is dynamically modulated to sustain critical biological processes, such as cell proliferation and differentiation and synaptic activity–dependent processes. The orchestration between metabolic regulation and the aforementioned physiological processes often relies on metabolism-dependent changes in the epigenetic landscape, which shape gene expression patterns to trigger selected downstream biological responses. Perturbations of brain metabolic pathways are frequently the cause of severe neurodevelopmental disorders. This review explores the latest insights into the regulation of brain metabolism in health and disease."}],"oa":1,"file_date_updated":"2025-12-09T12:53:09Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file":[{"creator":"dernst","file_id":"20745","relation":"main_file","date_updated":"2025-12-09T12:53:09Z","checksum":"1000228dc9aca3d48e92605607a99c41","content_type":"application/pdf","access_level":"open_access","date_created":"2025-12-09T12:53:09Z","success":1,"file_name":"2025_AnnualRevGenetics_Marano.pdf","file_size":3629986}],"date_published":"2025-11-03T00:00:00Z","volume":59,"author":[{"first_name":"Domenico","last_name":"Marano","id":"3b004c42-803f-11ed-ab7e-ecee8f08bd58","full_name":"Marano, Domenico"},{"first_name":"Vittoria","id":"ee829c33-edb3-11ed-b4fb-c020aaca4b01","last_name":"Mariano","full_name":"Mariano, Vittoria"},{"full_name":"Novarino, Gaia","orcid":"0000-0002-7673-7178","last_name":"Novarino","id":"3E57A680-F248-11E8-B48F-1D18A9856A87","first_name":"Gaia"}],"external_id":{"pmid":["40902207"]},"acknowledgement":"Funding provided by the European Union (grant 101057429) to G.N.","status":"public","year":"2025","page":"415-434","publication":"Annual Review of Genetics","language":[{"iso":"eng"}]},{"acknowledgement":"This work has been funded by the Cluster of Excellence “Advanced Imaging of Matter” of the Deutsche Forschungsgemeinschaft (DFG) - EXC 2056 - Project ID 390715994. G.K.M. has received funding from the Austrian Science Fund (FWF) [DOI: 10.55776/F1004].","status":"public","volume":7,"external_id":{"arxiv":["2503.09835"]},"author":[{"first_name":"A.","last_name":"Becker","full_name":"Becker, A."},{"first_name":"Georgios","full_name":"Koutentakis, Georgios","id":"d7b23d3a-9e21-11ec-b482-f76739596b95","last_name":"Koutentakis"},{"first_name":"P.","full_name":"Schmelcher, P.","last_name":"Schmelcher"}],"file":[{"date_created":"2025-12-09T14:14:46Z","access_level":"open_access","content_type":"application/pdf","checksum":"b9f5ccd6957759b0e578bc817a050532","file_size":2878032,"file_name":"2025_PhysReviewResearch_Becker.pdf","success":1,"relation":"main_file","file_id":"20754","creator":"dernst","date_updated":"2025-12-09T14:14:46Z"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_published":"2025-07-01T00:00:00Z","issue":"3","language":[{"iso":"eng"}],"publication":"Physical Review Research","year":"2025","day":"01","corr_author":"1","date_created":"2025-12-07T23:02:02Z","citation":{"ista":"Becker A, Koutentakis G, Schmelcher P. 2025. Dynamical probe of the pseudo Jahn-Teller effect in one-dimensional confined fermions. Physical Review Research. 7(3), 033088.","chicago":"Becker, A., Georgios Koutentakis, and P. Schmelcher. “Dynamical Probe of the Pseudo Jahn-Teller Effect in One-Dimensional Confined Fermions.” <i>Physical Review Research</i>. American Physical Society, 2025. <a href=\"https://doi.org/10.1103/2fr6-b59y\">https://doi.org/10.1103/2fr6-b59y</a>.","apa":"Becker, A., Koutentakis, G., &#38; Schmelcher, P. (2025). Dynamical probe of the pseudo Jahn-Teller effect in one-dimensional confined fermions. <i>Physical Review Research</i>. American Physical Society. <a href=\"https://doi.org/10.1103/2fr6-b59y\">https://doi.org/10.1103/2fr6-b59y</a>","mla":"Becker, A., et al. “Dynamical Probe of the Pseudo Jahn-Teller Effect in One-Dimensional Confined Fermions.” <i>Physical Review Research</i>, vol. 7, no. 3, 033088, American Physical Society, 2025, doi:<a href=\"https://doi.org/10.1103/2fr6-b59y\">10.1103/2fr6-b59y</a>.","ieee":"A. Becker, G. Koutentakis, and P. Schmelcher, “Dynamical probe of the pseudo Jahn-Teller effect in one-dimensional confined fermions,” <i>Physical Review Research</i>, vol. 7, no. 3. American Physical Society, 2025.","short":"A. Becker, G. Koutentakis, P. Schmelcher, Physical Review Research 7 (2025).","ama":"Becker A, Koutentakis G, Schmelcher P. Dynamical probe of the pseudo Jahn-Teller effect in one-dimensional confined fermions. <i>Physical Review Research</i>. 2025;7(3). doi:<a href=\"https://doi.org/10.1103/2fr6-b59y\">10.1103/2fr6-b59y</a>"},"quality_controlled":"1","scopus_import":"1","doi":"10.1103/2fr6-b59y","intvolume":"         7","oa":1,"file_date_updated":"2025-12-09T14:14:46Z","abstract":[{"text":"We investigate the real-time dynamics of a quenched quantum impurity immersed in a one-dimensional ultracold Fermi gas, focusing on the breakdown of the adiabatic Born-Oppenheimer approximation due to nonadiabatic effects. Despite a sizable impurity-bath mass imbalance, increasing interactions induce strong nonadiabatic couplings, disrupting adiabatic motion and enabling population transfer between the adiabatic potential energy curves. These transitions are governed by conical intersections arising from the pseudo Jahn-Teller effect, dynamically shaping the impurity's motion through the bath. Using ab initio simulations via the multilayer multiconfiguration time-dependent Hartree method and a multichannel Born-Oppenheimer framework, we track the impurity's evolution and directly prove the dynamical manifestation of the pseudo Jahn-Teller effect. We analyze two key scenarios: (i) a small initial shift, where a single avoided crossing drives transitions, and (ii) a large shift, where multiple avoided crossings lead to enhanced nonadiabaticity, self-trapping, and energy redistribution. Our findings establish ultracold fermionic few-body systems as tunable platforms for studying nonadiabatic quantum dynamics, opening new avenues for controlled impurity transport in strongly correlated environments.","lang":"eng"}],"ddc":["530"],"DOAJ_listed":"1","has_accepted_license":"1","article_number":"033088","article_processing_charge":"Yes","OA_type":"gold","PlanS_conform":"1","article_type":"original","project":[{"name":"Coherent Optical Metrology Beyond Electric-Dipole-Allowed Transitions","grant_number":"F100403","_id":"7c040762-9f16-11ee-852c-dd79eeee4ab3"}],"month":"07","arxiv":1,"oa_version":"Published Version","publication_status":"published","type":"journal_article","publisher":"American Physical Society","publication_identifier":{"issn":["2643-1564"]},"OA_place":"publisher","_id":"20732","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"title":"Dynamical probe of the pseudo Jahn-Teller effect in one-dimensional confined fermions","department":[{"_id":"MiLe"}],"date_updated":"2025-12-09T14:16:15Z"},{"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"department":[{"_id":"GeKa"}],"title":"Rapid optimal work extraction from a quantum-dot information engine","date_updated":"2025-12-09T14:07:49Z","OA_place":"publisher","publication_identifier":{"eissn":["2643-1564"]},"_id":"20733","arxiv":1,"publication_status":"published","publisher":"American Physical Society","type":"journal_article","oa_version":"Published Version","OA_type":"gold","PlanS_conform":"1","month":"07","article_type":"letter_note","ddc":["530"],"abstract":[{"lang":"eng","text":"The conversion of thermal energy into work is usually more efficient in the slow-driving regime, where the power output is vanishingly small. Efficient work extraction for fast-driving protocols remains an outstanding challenge at the nanoscale, where fluctuations play a significant role. In this Letter, we use a quantum-dot Szilard engine to extract work from thermal fluctuations with maximum efficiency over two decades of driving speed. We design and implement a family of optimized protocols ranging from the slow- to the fast-driving regime, and we measure the engine's efficiency as well as the mean and variance of its power output in each case. These optimized protocols exhibit significant improvements in power and efficiency compared to the naive approach. Our results also show that, when optimizing for efficiency, boosting the power output of a Szilard engine inevitably comes at the cost of increased power fluctuations."}],"oa":1,"file_date_updated":"2025-12-09T14:05:56Z","article_number":"L032017","article_processing_charge":"Yes","has_accepted_license":"1","citation":{"ama":"Aggarwal K, Rolandi A, Yang Y, et al. Rapid optimal work extraction from a quantum-dot information engine. <i>Physical Review Research</i>. 2025;7(3). doi:<a href=\"https://doi.org/10.1103/q3dx-kyqj\">10.1103/q3dx-kyqj</a>","ieee":"K. Aggarwal <i>et al.</i>, “Rapid optimal work extraction from a quantum-dot information engine,” <i>Physical Review Research</i>, vol. 7, no. 3. American Physical Society, 2025.","short":"K. Aggarwal, A. Rolandi, Y. Yang, J. Hickie, D. Jirovec, A. Ballabio, D. Chrastina, G. Isella, M.T. Mitchison, M. Perarnau-Llobet, N. Ares, Physical Review Research 7 (2025).","apa":"Aggarwal, K., Rolandi, A., Yang, Y., Hickie, J., Jirovec, D., Ballabio, A., … Ares, N. (2025). Rapid optimal work extraction from a quantum-dot information engine. <i>Physical Review Research</i>. American Physical Society. <a href=\"https://doi.org/10.1103/q3dx-kyqj\">https://doi.org/10.1103/q3dx-kyqj</a>","chicago":"Aggarwal, Kushagra, Alberto Rolandi, Yikai Yang, Joseph Hickie, Daniel Jirovec, Andrea Ballabio, Daniel Chrastina, et al. “Rapid Optimal Work Extraction from a Quantum-Dot Information Engine.” <i>Physical Review Research</i>. American Physical Society, 2025. <a href=\"https://doi.org/10.1103/q3dx-kyqj\">https://doi.org/10.1103/q3dx-kyqj</a>.","mla":"Aggarwal, Kushagra, et al. “Rapid Optimal Work Extraction from a Quantum-Dot Information Engine.” <i>Physical Review Research</i>, vol. 7, no. 3, L032017, American Physical Society, 2025, doi:<a href=\"https://doi.org/10.1103/q3dx-kyqj\">10.1103/q3dx-kyqj</a>.","ista":"Aggarwal K, Rolandi A, Yang Y, Hickie J, Jirovec D, Ballabio A, Chrastina D, Isella G, Mitchison MT, Perarnau-Llobet M, Ares N. 2025. Rapid optimal work extraction from a quantum-dot information engine. Physical Review Research. 7(3), L032017."},"date_created":"2025-12-07T23:02:02Z","quality_controlled":"1","scopus_import":"1","day":"01","related_material":{"link":[{"url":"https://doi.org/10.5281/zenodo.14516009","relation":"software"}]},"intvolume":"         7","doi":"10.1103/q3dx-kyqj","publication":"Physical Review Research","language":[{"iso":"eng"}],"issue":"3","year":"2025","status":"public","acknowledgement":"We thank Georgios Katsaros for providing the device for this experiment. K.A. and N.A. acknowledge the support provided by funding from the Engineering and Physical Sciences Research Council IAA (Grant No. EP/X525777/1). N.A. acknowledges support from the European Research Council (Grant Agreement No. 948932) and the Royal Society (URF-R1-191150). A.R. is supported by the Swiss National Science Foundation through a Postdoc. Mobility (Grant No. P500PT 225461). M.T.M. is supported by a Royal Society University Research Fellowship. M.P.-L. is supported by the Grant RYC2022-036958-I funded by the Spanish MICIU/AEI/10.13039/501100011033 and by ESF+. This project is cofunded by the European Union and UK Research & Innovation (Quantum Flagship project ASPECTS, Grant Agreement No. 101080167). However, views and opinions expressed are those of the authors only and do not necessarily reflect those of the European Union, Research Executive Agency, or UK Research & Innovation. Neither the European Union nor UK Research & Innovation can be held responsible for them.","file":[{"success":1,"file_name":"2025_PhysReviewResearch_Aggarwal.pdf","file_size":536624,"checksum":"66f2b572a36a7b5fe611a7639a8b6f12","access_level":"open_access","content_type":"application/pdf","date_created":"2025-12-09T14:05:56Z","date_updated":"2025-12-09T14:05:56Z","creator":"dernst","file_id":"20753","relation":"main_file"}],"date_published":"2025-07-01T00:00:00Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","volume":7,"author":[{"first_name":"Kushagra","last_name":"Aggarwal","full_name":"Aggarwal, Kushagra"},{"full_name":"Rolandi, Alberto","last_name":"Rolandi","first_name":"Alberto"},{"full_name":"Yang, Yikai","last_name":"Yang","first_name":"Yikai"},{"last_name":"Hickie","full_name":"Hickie, Joseph","first_name":"Joseph"},{"first_name":"Daniel","id":"4C473F58-F248-11E8-B48F-1D18A9856A87","last_name":"Jirovec","full_name":"Jirovec, Daniel","orcid":"0000-0002-7197-4801"},{"first_name":"Andrea","full_name":"Ballabio, Andrea","last_name":"Ballabio"},{"last_name":"Chrastina","full_name":"Chrastina, Daniel","first_name":"Daniel"},{"full_name":"Isella, Giovanni","last_name":"Isella","first_name":"Giovanni"},{"first_name":"Mark T.","full_name":"Mitchison, Mark T.","last_name":"Mitchison"},{"first_name":"Martí","last_name":"Perarnau-Llobet","full_name":"Perarnau-Llobet, Martí"},{"full_name":"Ares, Natalia","last_name":"Ares","first_name":"Natalia"}],"external_id":{"arxiv":["2412.06916"]}},{"_id":"20734","OA_place":"publisher","publication_identifier":{"issn":["2520-2316"],"eissn":["2520-2324"]},"date_updated":"2025-12-09T13:53:31Z","department":[{"_id":"MaMo"}],"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"title":"Spectral estimators for structured generalized linear models via approximate message passing","month":"09","project":[{"name":"Prix Lopez-Loretta 2019 - Marco Mondelli","_id":"059876FA-7A3F-11EA-A408-12923DDC885E"}],"article_type":"original","OA_type":"diamond","PlanS_conform":"1","publisher":"EMS Press","type":"journal_article","publication_status":"published","oa_version":"Published Version","intvolume":"         8","doi":"10.4171/MSL/52","quality_controlled":"1","date_created":"2025-12-07T23:02:02Z","citation":{"ama":"Zhang Y, Ji HC, Venkataramanan R, Mondelli M. Spectral estimators for structured generalized linear models via approximate message passing. <i>Mathematical Statistics and Learning</i>. 2025;8(3-4):193-304. doi:<a href=\"https://doi.org/10.4171/MSL/52\">10.4171/MSL/52</a>","ieee":"Y. Zhang, H. C. Ji, R. Venkataramanan, and M. Mondelli, “Spectral estimators for structured generalized linear models via approximate message passing,” <i>Mathematical Statistics and Learning</i>, vol. 8, no. 3–4. EMS Press, pp. 193–304, 2025.","short":"Y. Zhang, H.C. Ji, R. Venkataramanan, M. Mondelli, Mathematical Statistics and Learning 8 (2025) 193–304.","mla":"Zhang, Yihan, et al. “Spectral Estimators for Structured Generalized Linear Models via Approximate Message Passing.” <i>Mathematical Statistics and Learning</i>, vol. 8, no. 3–4, EMS Press, 2025, pp. 193–304, doi:<a href=\"https://doi.org/10.4171/MSL/52\">10.4171/MSL/52</a>.","apa":"Zhang, Y., Ji, H. C., Venkataramanan, R., &#38; Mondelli, M. (2025). Spectral estimators for structured generalized linear models via approximate message passing. <i>Mathematical Statistics and Learning</i>. EMS Press. <a href=\"https://doi.org/10.4171/MSL/52\">https://doi.org/10.4171/MSL/52</a>","chicago":"Zhang, Yihan, Hong Chang Ji, Ramji Venkataramanan, and Marco Mondelli. “Spectral Estimators for Structured Generalized Linear Models via Approximate Message Passing.” <i>Mathematical Statistics and Learning</i>. EMS Press, 2025. <a href=\"https://doi.org/10.4171/MSL/52\">https://doi.org/10.4171/MSL/52</a>.","ista":"Zhang Y, Ji HC, Venkataramanan R, Mondelli M. 2025. Spectral estimators for structured generalized linear models via approximate message passing. Mathematical Statistics and Learning. 8(3–4), 193–304."},"scopus_import":"1","corr_author":"1","day":"02","article_processing_charge":"No","has_accepted_license":"1","abstract":[{"lang":"eng","text":"We consider the problem of parameter estimation in a high-dimensional generalized linear model. Spectral methods obtained via the principal eigenvector of a suitable data-dependent matrix provide a simple yet surprisingly effective solution. However, despite their wide use, a rigorous performance characterization, as well as a principled way to preprocess the data, are available only for unstructured (i.i.d. Gaussian and Haar orthogonal) designs. In contrast, real-world data matrices are highly structured and exhibit non-trivial correlations. To address the problem, we consider correlated Gaussian designs capturing the anisotropic nature of the features via a covariance matrix Σ. Our main result is a precise asymptotic characterization of the performance of spectral estimators. This allows us to identify the optimal preprocessing that minimizes the number of samples needed for parameter estimation. Surprisingly, such preprocessing is universal across a broad set of designs, which partly addresses a conjecture on optimal spectral estimators for rotationally invariant models. Our principled approach vastly improves upon previous heuristic methods, including for designs common in computational imaging and genetics. The proposed methodology, based on approximate message passing, is broadly applicable and opens the way to the precise characterization of spiked matrices and of the corresponding spectral methods in a variety of settings."}],"ddc":["000"],"oa":1,"file_date_updated":"2025-12-09T13:50:03Z","date_published":"2025-09-02T00:00:00Z","file":[{"date_updated":"2025-12-09T13:50:03Z","file_id":"20752","creator":"dernst","relation":"main_file","success":1,"file_name":"2025_MathStatLearning_Zhang.pdf","file_size":1379626,"checksum":"55a1bd9c1b6b0198c42504fb94f4ad4c","date_created":"2025-12-09T13:50:03Z","content_type":"application/pdf","access_level":"open_access"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","volume":8,"author":[{"full_name":"Zhang, Yihan","orcid":"0000-0002-6465-6258","last_name":"Zhang","id":"2ce5da42-b2ea-11eb-bba5-9f264e9d002c","first_name":"Yihan"},{"first_name":"Hong Chang","full_name":"Ji, Hong Chang","last_name":"Ji"},{"first_name":"Ramji","last_name":"Venkataramanan","full_name":"Venkataramanan, Ramji"},{"last_name":"Mondelli","id":"27EB676C-8706-11E9-9510-7717E6697425","full_name":"Mondelli, Marco","orcid":"0000-0002-3242-7020","first_name":"Marco"}],"status":"public","acknowledgement":"This work was done when Y. Z. and H. C. J. were at the Institute of Science and Technology Austria. Y. Z. thanks Hugo Latourelle-Vigeant for bringing [53] to the authors’ attention.\r\nY. Z. and M. M. are partially supported by the 2019 Lopez-Loreta Prize and by the Interdisciplinary Projects Committee (IPC) at ISTA. H. C. J. is supported by the ERC Advanced Grant “RMTBeyond” No. 101020331.","year":"2025","publication":"Mathematical Statistics and Learning","language":[{"iso":"eng"}],"page":"193-304","issue":"3-4"},{"date_created":"2025-12-09T13:36:29Z","OA_place":"repository","citation":{"apa":"Van Straaten, B., Fedele, F., Vigneau, F., Hickie, J., Jirovec, D., Chrastina, D., … Ares, N. (2025). All rf-based tuning algorithm for quantum devices using machine learning. Zenodo. <a href=\"https://doi.org/10.5281/ZENODO.17352653\">https://doi.org/10.5281/ZENODO.17352653</a>","mla":"Van Straaten, Barnaby, et al. <i>All Rf-Based Tuning Algorithm for Quantum Devices Using Machine Learning</i>. Zenodo, 2025, doi:<a href=\"https://doi.org/10.5281/ZENODO.17352653\">10.5281/ZENODO.17352653</a>.","chicago":"Van Straaten, Barnaby, Federico Fedele, Florian Vigneau, Joseph Hickie, Daniel Jirovec, Daniel Chrastina, Giovanni Isella, and Natalia Ares. “All Rf-Based Tuning Algorithm for Quantum Devices Using Machine Learning.” Zenodo, 2025. <a href=\"https://doi.org/10.5281/ZENODO.17352653\">https://doi.org/10.5281/ZENODO.17352653</a>.","ista":"Van Straaten B, Fedele F, Vigneau F, Hickie J, Jirovec D, Chrastina D, Isella G, Ares N. 2025. All rf-based tuning algorithm for quantum devices using machine learning, Zenodo, <a href=\"https://doi.org/10.5281/ZENODO.17352653\">10.5281/ZENODO.17352653</a>.","short":"B. Van Straaten, F. Fedele, F. Vigneau, J. Hickie, D. Jirovec, D. Chrastina, G. Isella, N. Ares, (2025).","ieee":"B. Van Straaten <i>et al.</i>, “All rf-based tuning algorithm for quantum devices using machine learning.” Zenodo, 2025.","ama":"Van Straaten B, Fedele F, Vigneau F, et al. All rf-based tuning algorithm for quantum devices using machine learning. 2025. doi:<a href=\"https://doi.org/10.5281/ZENODO.17352653\">10.5281/ZENODO.17352653</a>"},"day":"14","related_material":{"record":[{"status":"public","relation":"used_in_publication","id":"20730"}]},"_id":"20750","doi":"10.5281/ZENODO.17352653","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"ddc":["530"],"title":"All rf-based tuning algorithm for quantum devices using machine learning","department":[{"_id":"GeKa"}],"oa":1,"date_updated":"2025-12-09T14:49:36Z","article_processing_charge":"No","has_accepted_license":"1","main_file_link":[{"url":"https://doi.org/10.5281/zenodo.17352653","open_access":"1"}],"status":"public","OA_type":"green","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_published":"2025-10-14T00:00:00Z","month":"10","author":[{"last_name":"Van Straaten","full_name":"Van Straaten, Barnaby","first_name":"Barnaby"},{"first_name":"Federico","full_name":"Fedele, Federico","last_name":"Fedele"},{"first_name":"Florian","last_name":"Vigneau","full_name":"Vigneau, Florian"},{"last_name":"Hickie","full_name":"Hickie, Joseph","first_name":"Joseph"},{"full_name":"Jirovec, Daniel","orcid":"0000-0002-7197-4801","last_name":"Jirovec","id":"4C473F58-F248-11E8-B48F-1D18A9856A87","first_name":"Daniel"},{"first_name":"Daniel","last_name":"Chrastina","full_name":"Chrastina, Daniel"},{"first_name":"Giovanni","full_name":"Isella, Giovanni","last_name":"Isella"},{"first_name":"Natalia","full_name":"Ares, Natalia","last_name":"Ares"}],"type":"research_data_reference","publisher":"Zenodo","year":"2025","oa_version":"Published Version"},{"doi":"10.1021/acs.jchemed.5c00555","intvolume":"       102","day":"15","quality_controlled":"1","date_created":"2025-12-09T14:27:11Z","citation":{"ista":"Horwitz MA, Al-Ahmad R, Bai X, Balletti M, Bellotti P, Ben-Tal Y, Campbell MW, Cheasty K, Crossley SWM, Day CS, Deneny PJ, Forbes KC, Gogarnoiu ES, Grant PS, Halder R, Harris GR, Hernández-Lladó P, Jouanneau M, Jost V, Kutateladze DA, Laudadio G, Liu C, Looby AP, Maestro A, McCallum T, Palkowitz MD, Paolillo JM, Perry MWD, Reisenbauer J, Reyes C, Sharma HA, Sheong FK, Thoma B, Tran AV, Tran DN, Aguilar Troyano FJ, Verheyen T, Walsh MP, Wagner A, Wearing ER, Wuitschik G. 2025. Reimagining advanced chemistry education: A community-based approach to course design for modern learners. Journal of Chemical Education. 102(9), 3777–3783.","chicago":"Horwitz, Matthew A., Reem Al-Ahmad, Xingfeng Bai, Matteo Balletti, Peter Bellotti, Yael Ben-Tal, Mark W. Campbell, et al. “Reimagining Advanced Chemistry Education: A Community-Based Approach to Course Design for Modern Learners.” <i>Journal of Chemical Education</i>. American Chemical Society, 2025. <a href=\"https://doi.org/10.1021/acs.jchemed.5c00555\">https://doi.org/10.1021/acs.jchemed.5c00555</a>.","apa":"Horwitz, M. A., Al-Ahmad, R., Bai, X., Balletti, M., Bellotti, P., Ben-Tal, Y., … Wuitschik, G. (2025). Reimagining advanced chemistry education: A community-based approach to course design for modern learners. <i>Journal of Chemical Education</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/acs.jchemed.5c00555\">https://doi.org/10.1021/acs.jchemed.5c00555</a>","mla":"Horwitz, Matthew A., et al. “Reimagining Advanced Chemistry Education: A Community-Based Approach to Course Design for Modern Learners.” <i>Journal of Chemical Education</i>, vol. 102, no. 9, American Chemical Society, 2025, pp. 3777–83, doi:<a href=\"https://doi.org/10.1021/acs.jchemed.5c00555\">10.1021/acs.jchemed.5c00555</a>.","ama":"Horwitz MA, Al-Ahmad R, Bai X, et al. Reimagining advanced chemistry education: A community-based approach to course design for modern learners. <i>Journal of Chemical Education</i>. 2025;102(9):3777-3783. doi:<a href=\"https://doi.org/10.1021/acs.jchemed.5c00555\">10.1021/acs.jchemed.5c00555</a>","short":"M.A. Horwitz, R. Al-Ahmad, X. Bai, M. Balletti, P. Bellotti, Y. Ben-Tal, M.W. Campbell, K. Cheasty, S.W.M. Crossley, C.S. Day, P.J. Deneny, K.C. Forbes, E.S. Gogarnoiu, P.S. Grant, R. Halder, G.R. Harris, P. Hernández-Lladó, M. Jouanneau, V. Jost, D.A. Kutateladze, G. Laudadio, C. Liu, A.P. Looby, A. Maestro, T. McCallum, M.D. Palkowitz, J.M. Paolillo, M.W.D. Perry, J. Reisenbauer, C. Reyes, H.A. Sharma, F.K. Sheong, B. Thoma, A.V. Tran, D.N. Tran, F.J. Aguilar Troyano, T. Verheyen, M.P. Walsh, A. Wagner, E.R. Wearing, G. Wuitschik, Journal of Chemical Education 102 (2025) 3777–3783.","ieee":"M. A. Horwitz <i>et al.</i>, “Reimagining advanced chemistry education: A community-based approach to course design for modern learners,” <i>Journal of Chemical Education</i>, vol. 102, no. 9. American Chemical Society, pp. 3777–3783, 2025."},"scopus_import":"1","article_processing_charge":"No","abstract":[{"text":"Chemistry education at the graduate level and beyond faces the formidable challenge of a boundless and constantly expanding frontier of knowledge on many fronts. While modern learners have an increasingly broad range of resources available at their disposal (including open access text-based references, online videos, training problems, and other digital learning materials), there are comparatively fewer such materials aimed at the highest levels of study. With the goal of producing widely accessible graduate-level learning content, we created a community-based approach to online course design that is easily digestible to meet the expectations of modern learners. Herein, we report the development of an open access Advanced Organic Chemistry video-based online course and several other specialized minicourses using the Synthesis Workshop YouTube channel.","lang":"eng"}],"volume":102,"extern":"1","author":[{"first_name":"Matthew A.","full_name":"Horwitz, Matthew A.","last_name":"Horwitz"},{"first_name":"Reem","full_name":"Al-Ahmad, Reem","last_name":"Al-Ahmad"},{"first_name":"Xingfeng","full_name":"Bai, Xingfeng","last_name":"Bai"},{"first_name":"Matteo","full_name":"Balletti, Matteo","last_name":"Balletti"},{"last_name":"Bellotti","full_name":"Bellotti, Peter","first_name":"Peter"},{"first_name":"Yael","last_name":"Ben-Tal","full_name":"Ben-Tal, Yael"},{"full_name":"Campbell, Mark W.","last_name":"Campbell","first_name":"Mark W."},{"last_name":"Cheasty","full_name":"Cheasty, Kathleen","first_name":"Kathleen"},{"first_name":"Steven W. M.","last_name":"Crossley","full_name":"Crossley, Steven W. M."},{"first_name":"Craig S.","last_name":"Day","full_name":"Day, Craig S."},{"first_name":"Patrick J.","full_name":"Deneny, Patrick J.","last_name":"Deneny"},{"last_name":"Forbes","full_name":"Forbes, Katherine C.","first_name":"Katherine C."},{"first_name":"Emma S.","full_name":"Gogarnoiu, Emma S.","last_name":"Gogarnoiu"},{"first_name":"Phillip S.","full_name":"Grant, Phillip S.","last_name":"Grant"},{"full_name":"Halder, Riya","last_name":"Halder","first_name":"Riya"},{"first_name":"Georgia R.","full_name":"Harris, Georgia R.","last_name":"Harris"},{"first_name":"Pol","full_name":"Hernández-Lladó, Pol","last_name":"Hernández-Lladó"},{"full_name":"Jouanneau, Morgan","last_name":"Jouanneau","first_name":"Morgan"},{"last_name":"Jost","full_name":"Jost, Vera","first_name":"Vera"},{"first_name":"Dennis A.","full_name":"Kutateladze, Dennis A.","last_name":"Kutateladze"},{"full_name":"Laudadio, Gabriele","last_name":"Laudadio","first_name":"Gabriele"},{"last_name":"Liu","full_name":"Liu, Chun","first_name":"Chun"},{"first_name":"Aidan P.","last_name":"Looby","full_name":"Looby, Aidan P."},{"last_name":"Maestro","full_name":"Maestro, Aitor","first_name":"Aitor"},{"full_name":"McCallum, Terry","last_name":"McCallum","first_name":"Terry"},{"first_name":"Maximilian D.","full_name":"Palkowitz, Maximilian D.","last_name":"Palkowitz"},{"last_name":"Paolillo","full_name":"Paolillo, Joshua M.","first_name":"Joshua M."},{"first_name":"Matthew W. D.","full_name":"Perry, Matthew W. D.","last_name":"Perry"},{"id":"51d862e9-36ee-11f0-86d3-8534c85a5496","last_name":"Reisenbauer","full_name":"Reisenbauer, Julia","first_name":"Julia"},{"full_name":"Reyes, Cesar","last_name":"Reyes","first_name":"Cesar"},{"last_name":"Sharma","full_name":"Sharma, Hayden A.","first_name":"Hayden A."},{"last_name":"Sheong","full_name":"Sheong, Fu Kit","first_name":"Fu Kit"},{"first_name":"Benjamin","full_name":"Thoma, Benjamin","last_name":"Thoma"},{"first_name":"Andrew V.","last_name":"Tran","full_name":"Tran, Andrew V."},{"first_name":"Duc N.","last_name":"Tran","full_name":"Tran, Duc N."},{"last_name":"Aguilar Troyano","full_name":"Aguilar Troyano, Francisco José","first_name":"Francisco José"},{"first_name":"Thomas","last_name":"Verheyen","full_name":"Verheyen, Thomas"},{"full_name":"Walsh, Mark P.","last_name":"Walsh","first_name":"Mark P."},{"full_name":"Wagner, Alicia","last_name":"Wagner","first_name":"Alicia"},{"last_name":"Wearing","full_name":"Wearing, Emily R.","first_name":"Emily R."},{"last_name":"Wuitschik","full_name":"Wuitschik, Georg","first_name":"Georg"}],"date_published":"2025-08-15T00:00:00Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","year":"2025","issue":"9","publication":"Journal of Chemical Education","language":[{"iso":"eng"}],"page":"3777-3783","_id":"20767","publication_identifier":{"issn":["0021-9584"],"eissn":["1938-1328"]},"date_updated":"2025-12-16T12:13:49Z","title":"Reimagining advanced chemistry education: A community-based approach to course design for modern learners","article_type":"original","month":"08","OA_type":"closed access","oa_version":"None","publication_status":"published","type":"journal_article","publisher":"American Chemical Society"},{"publication_identifier":{"eissn":["2041-1723"]},"OA_place":"publisher","pmid":1,"_id":"20796","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"title":"BAF-1–VRK-1 mediated release of meiotic chromosomes from the nuclear periphery is important for genome integrity","department":[{"_id":"BeVi"}],"date_updated":"2025-12-15T09:28:37Z","OA_type":"gold","PlanS_conform":"1","article_type":"original","month":"11","project":[{"grant_number":"F8810","name":"The highjacking of meiosis for asexual reproduction","_id":"34ae1506-11ca-11ed-8bc3-c14f4c474396"}],"oa_version":"Published Version","type":"journal_article","publication_status":"published","publisher":"Springer Nature","day":"25","citation":{"ista":"Paouneskou D, Baudrimont A, Kelemen RK, Elkrewi MN, Graf A, Moukbel Ali Aldawla S, Kölbl C, Tiemann-Boege I, Vicoso B, Jantsch V. 2025. BAF-1–VRK-1 mediated release of meiotic chromosomes from the nuclear periphery is important for genome integrity. Nature Communications. 16, 10446.","apa":"Paouneskou, D., Baudrimont, A., Kelemen, R. K., Elkrewi, M. N., Graf, A., Moukbel Ali Aldawla, S., … Jantsch, V. (2025). BAF-1–VRK-1 mediated release of meiotic chromosomes from the nuclear periphery is important for genome integrity. <i>Nature Communications</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41467-025-65420-9\">https://doi.org/10.1038/s41467-025-65420-9</a>","mla":"Paouneskou, Dimitra, et al. “BAF-1–VRK-1 Mediated Release of Meiotic Chromosomes from the Nuclear Periphery Is Important for Genome Integrity.” <i>Nature Communications</i>, vol. 16, 10446, Springer Nature, 2025, doi:<a href=\"https://doi.org/10.1038/s41467-025-65420-9\">10.1038/s41467-025-65420-9</a>.","chicago":"Paouneskou, Dimitra, Antoine Baudrimont, Réka K Kelemen, Marwan N Elkrewi, Angela Graf, Shehab Moukbel Ali Aldawla, Claudia Kölbl, Irene Tiemann-Boege, Beatriz Vicoso, and Verena Jantsch. “BAF-1–VRK-1 Mediated Release of Meiotic Chromosomes from the Nuclear Periphery Is Important for Genome Integrity.” <i>Nature Communications</i>. Springer Nature, 2025. <a href=\"https://doi.org/10.1038/s41467-025-65420-9\">https://doi.org/10.1038/s41467-025-65420-9</a>.","short":"D. Paouneskou, A. Baudrimont, R.K. Kelemen, M.N. Elkrewi, A. Graf, S. Moukbel Ali Aldawla, C. Kölbl, I. Tiemann-Boege, B. Vicoso, V. Jantsch, Nature Communications 16 (2025).","ieee":"D. Paouneskou <i>et al.</i>, “BAF-1–VRK-1 mediated release of meiotic chromosomes from the nuclear periphery is important for genome integrity,” <i>Nature Communications</i>, vol. 16. Springer Nature, 2025.","ama":"Paouneskou D, Baudrimont A, Kelemen RK, et al. BAF-1–VRK-1 mediated release of meiotic chromosomes from the nuclear periphery is important for genome integrity. <i>Nature Communications</i>. 2025;16. doi:<a href=\"https://doi.org/10.1038/s41467-025-65420-9\">10.1038/s41467-025-65420-9</a>"},"date_created":"2025-12-11T10:45:06Z","quality_controlled":"1","scopus_import":"1","doi":"10.1038/s41467-025-65420-9","intvolume":"        16","oa":1,"file_date_updated":"2025-12-15T09:25:51Z","abstract":[{"lang":"eng","text":"Rapid prophase chromosome movements ensure faithful alignment of the parental homologous chromosomes and successful synapsis formation during meiosis. These movements are driven by cytoplasmic forces transmitted to the nuclear periphery, where chromosome ends are attached through transmembrane proteins. During many developmental stages a specific genome architecture with chromatin nuclear periphery contacts mediates specific gene expression. Whether chromatin is removed from the nuclear periphery as a consequence of chromosome motions or by a specific mechanism is not fully understood. Here, we identify a mechanism to remove chromatin from the nuclear periphery through vaccinia related kinase (VRK-1)–dependent phosphorylation of Barrier to Autointegration Factor 1 (BAF-1) in Caenorhabditis elegans early prophase of meiosis. Interfering with chromatin removal delays chromosome pairing, impairs synapsis, produces oocytes with abnormal chromosomes and elevated apoptosis. Long read sequencing reveals deletions and duplications in offspring lacking VRK-1 underscoring the importance of the BAF-1–VRK-1 module in preserving genome stability in gametes during rapid chromosome movements."}],"ddc":["570"],"DOAJ_listed":"1","has_accepted_license":"1","article_number":"10446","article_processing_charge":"Yes","acknowledgement":"We are grateful to Monique Zetka, Nicola Silva, and Yumi Kim, Needhi Bhalla, George Krohne and Rueyling Lin for providing reagents; Scott Kennedy for sharing the multiplexed FISH library; and members of the Max Perutz Labs’ BioOptics facility (Irmgard Fischer, Josef Gotzmann, Thomas Peterbauer, Clara Bodner, and Nick Wedige) for training and support in image acquisition. We also thank the members of the NGS facility at the Vienna Biocenter. This work was funded by the Austrian Science Fund (FWF) SFB projects F 8805-B (VJ), https://doi.org/10.55776/F88, F 8809-B (ITB), and F8810-B (BV). We are also grateful to members of the V. Jantsch laboratory for helpful discussions. Some strains were provided by the Caenorhabditis Genetics Center, which is funded by the National Institutes of Health Office of Research Infrastructure Programs (P40OD010440).","status":"public","volume":16,"external_id":{"pmid":["41290579"]},"author":[{"first_name":"Dimitra","last_name":"Paouneskou","full_name":"Paouneskou, Dimitra"},{"first_name":"Antoine","last_name":"Baudrimont","full_name":"Baudrimont, Antoine"},{"id":"48D3F8DE-F248-11E8-B48F-1D18A9856A87","last_name":"Kelemen","full_name":"Kelemen, Réka K","orcid":"0000-0002-8489-9281","first_name":"Réka K"},{"id":"0B46FACA-A8E1-11E9-9BD3-79D1E5697425","last_name":"Elkrewi","orcid":"0000-0002-5328-7231","full_name":"Elkrewi, Marwan N","first_name":"Marwan N"},{"first_name":"Angela","last_name":"Graf","full_name":"Graf, Angela"},{"last_name":"Moukbel Ali Aldawla","full_name":"Moukbel Ali Aldawla, Shehab","first_name":"Shehab"},{"first_name":"Claudia","last_name":"Kölbl","full_name":"Kölbl, Claudia"},{"first_name":"Irene","last_name":"Tiemann-Boege","full_name":"Tiemann-Boege, Irene"},{"first_name":"Beatriz","full_name":"Vicoso, Beatriz","orcid":"0000-0002-4579-8306","id":"49E1C5C6-F248-11E8-B48F-1D18A9856A87","last_name":"Vicoso"},{"first_name":"Verena","last_name":"Jantsch","full_name":"Jantsch, Verena"}],"date_published":"2025-11-25T00:00:00Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file":[{"success":1,"file_name":"2025_NatureComm_Paouneskou.pdf","file_size":8096309,"checksum":"a952f7ea050242b79008540de49a0e61","content_type":"application/pdf","access_level":"open_access","date_created":"2025-12-15T09:25:51Z","date_updated":"2025-12-15T09:25:51Z","creator":"dernst","file_id":"20823","relation":"main_file"}],"language":[{"iso":"eng"}],"publication":"Nature Communications","year":"2025"},{"department":[{"_id":"OnHo"}],"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"title":"Surpassing the loss-noise robustness trade-off in quantum key distribution","date_updated":"2025-12-15T09:40:58Z","publication_identifier":{"eissn":["2331-7019"]},"OA_place":"publisher","_id":"20797","arxiv":1,"oa_version":"Published Version","publisher":"American Physical Society","type":"journal_article","publication_status":"published","PlanS_conform":"1","OA_type":"hybrid","article_type":"original","month":"08","file_date_updated":"2025-12-15T09:39:12Z","oa":1,"ddc":["530"],"abstract":[{"text":"Quantum key distribution (QKD) offers a theoretically secure method to share secret keys, yet practical implementations face challenges due to noise and loss over long-distance channels. Traditional QKD protocols require extensive noise compensation, hindering their industrial scalability and lowering the achievable key rates. Alternative protocols encode logical qubits in noise-resilient states but at the cost of using many physical qubits, increasing susceptibility to loss and limiting transmission distance. In this work, we introduce a logical-qubit encoding that uses antisymmetric Bell states in the continuous photonic degrees of freedom, frequency and time. By leveraging the continuous space, we overcome this noise-loss robustness trade-off by minimizing the number of photons per logical qubit while optimizing the encoding resilience over noise fluctuations. We analyze the security of our encoding and demonstrate its robustness compared to existing state-of-the-art protocols. This approach provides a path toward scalable, efficient QKD implementations under realistic noise conditions.","lang":"eng"}],"has_accepted_license":"1","article_processing_charge":"Yes (in subscription journal)","article_number":"024072","day":"29","scopus_import":"1","quality_controlled":"1","date_created":"2025-12-11T10:46:28Z","citation":{"ista":"Seabrook H, Lavie E, Strömberg KT, Stafford MP, Rubino G. 2025. Surpassing the loss-noise robustness trade-off in quantum key distribution. Physical Review Applied. 24(2), 024072.","mla":"Seabrook, Hannah, et al. “Surpassing the Loss-Noise Robustness Trade-off in Quantum Key Distribution.” <i>Physical Review Applied</i>, vol. 24, no. 2, 024072, American Physical Society, 2025, doi:<a href=\"https://doi.org/10.1103/xq2l-r4r7\">10.1103/xq2l-r4r7</a>.","apa":"Seabrook, H., Lavie, E., Strömberg, K. T., Stafford, M. P., &#38; Rubino, G. (2025). Surpassing the loss-noise robustness trade-off in quantum key distribution. <i>Physical Review Applied</i>. American Physical Society. <a href=\"https://doi.org/10.1103/xq2l-r4r7\">https://doi.org/10.1103/xq2l-r4r7</a>","chicago":"Seabrook, Hannah, Emilien Lavie, Karl T Strömberg, Matthew P. Stafford, and Giulia Rubino. “Surpassing the Loss-Noise Robustness Trade-off in Quantum Key Distribution.” <i>Physical Review Applied</i>. American Physical Society, 2025. <a href=\"https://doi.org/10.1103/xq2l-r4r7\">https://doi.org/10.1103/xq2l-r4r7</a>.","short":"H. Seabrook, E. Lavie, K.T. Strömberg, M.P. Stafford, G. Rubino, Physical Review Applied 24 (2025).","ieee":"H. Seabrook, E. Lavie, K. T. Strömberg, M. P. Stafford, and G. Rubino, “Surpassing the loss-noise robustness trade-off in quantum key distribution,” <i>Physical Review Applied</i>, vol. 24, no. 2. American Physical Society, 2025.","ama":"Seabrook H, Lavie E, Strömberg KT, Stafford MP, Rubino G. Surpassing the loss-noise robustness trade-off in quantum key distribution. <i>Physical Review Applied</i>. 2025;24(2). doi:<a href=\"https://doi.org/10.1103/xq2l-r4r7\">10.1103/xq2l-r4r7</a>"},"doi":"10.1103/xq2l-r4r7","intvolume":"        24","issue":"2","language":[{"iso":"eng"}],"publication":"Physical Review Applied","year":"2025","acknowledgement":"We thank B. Baragiola, A. Boubriak, M. Clark, M. Jones, and P. Skrzypczyk for useful discussions. H.S. acknowledges financial support from EPSRC Quantum Engineering Centre for Doctoral Training Grant No. EP/SO23607/1. E.L. acknowledges support from the Engineering and Physical Sciences Research Council (EPSRC) Hub in Quantum Computing and Simulation (EP/T001062/1). T.S. acknowledges that they received no funding in support of this research. M.P.S. acknowledges support from the EPSRC Quantum Engineering Centre for Doctoral Training EP/SO23607/1 and the European Commission through Starting Grant No. ERC-2018-STG803665 (PEQEM). G.R. acknowledges support from the Royal Commission for the Exhibition of 1851 through a Research Fellowship, from the European Commission through Starting Grant No. ERC-2018-STG803665 (PEQEM) and Advanced Grant No. ERC-2020-ADG101021085 (FLQuant), and from EPSRC through Standard Proposal Grant No. EP/X016218/1 (Mono-Squeeze).","status":"public","external_id":{"arxiv":["2412.08694"]},"author":[{"first_name":"Hannah","last_name":"Seabrook","full_name":"Seabrook, Hannah"},{"last_name":"Lavie","full_name":"Lavie, Emilien","first_name":"Emilien"},{"last_name":"Strömberg","id":"68011cd2-da32-11ee-a930-b2774c7aba5f","full_name":"Strömberg, Karl T","first_name":"Karl T"},{"first_name":"Matthew P.","last_name":"Stafford","full_name":"Stafford, Matthew P."},{"full_name":"Rubino, Giulia","last_name":"Rubino","first_name":"Giulia"}],"volume":24,"file":[{"relation":"main_file","file_id":"20824","creator":"dernst","date_updated":"2025-12-15T09:39:12Z","date_created":"2025-12-15T09:39:12Z","access_level":"open_access","content_type":"application/pdf","checksum":"12ddb0414780f65b8e690fe0e6cfb95e","file_size":3028735,"file_name":"2025_PhysReviewApplied_Seabrook.pdf","success":1}],"date_published":"2025-08-29T00:00:00Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_published":"2025-12-10T00:00:00Z","month":"12","author":[{"first_name":"Annamaria","full_name":"Hlavata, Annamaria","last_name":"Hlavata","id":"36062FEC-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Neuditschko","full_name":"Neuditschko, Benjamin","first_name":"Benjamin"},{"first_name":"Ulla","last_name":"Schellhaas","full_name":"Schellhaas, Ulla"},{"last_name":"Plaschka","full_name":"Plaschka, Clemens","first_name":"Clemens"},{"last_name":"Herzog","full_name":"Herzog, Franz","first_name":"Franz"},{"first_name":"Carrie A","last_name":"Bernecky","id":"2CB9DFE2-F248-11E8-B48F-1D18A9856A87","full_name":"Bernecky, Carrie A","orcid":"0000-0003-0893-7036"}],"acknowledgement":"We thank A. Salmazo for assistance with Pol II purification. We thank staff at the VBCF Proteomics facility for immunoprecipitation-mass spectrometry analysis, and J.A. Stopp for assistance with IP-MS data visualization. This research was further supported by the Scientific Service Units (SSUs) of IST Austria through resources provided by the Lab Support Facility (LSF), Electron Microscopy (EMF), Scientific Computing (SciComp), and the Preclinical Facility (PCF).","main_file_link":[{"open_access":"1","url":"https://doi.org/10.64898/2025.12.10.692585"}],"status":"public","publication_status":"published","type":"preprint","publisher":"bioRxiv","oa_version":"None","year":"2025","language":[{"iso":"eng"}],"_id":"20804","doi":"10.64898/2025.12.10.692585","citation":{"chicago":"Hlavata, Annamaria, Benjamin Neuditschko, Ulla Schellhaas, Clemens Plaschka, Franz Herzog, and Carrie Bernecky. “Structure of Cytoplasmic RNA Polymerase II.” bioRxiv, 2025. <a href=\"https://doi.org/10.64898/2025.12.10.692585\">https://doi.org/10.64898/2025.12.10.692585</a>.","apa":"Hlavata, A., Neuditschko, B., Schellhaas, U., Plaschka, C., Herzog, F., &#38; Bernecky, C. (2025). Structure of cytoplasmic RNA polymerase II. bioRxiv. <a href=\"https://doi.org/10.64898/2025.12.10.692585\">https://doi.org/10.64898/2025.12.10.692585</a>","mla":"Hlavata, Annamaria, et al. <i>Structure of Cytoplasmic RNA Polymerase II</i>. bioRxiv, 2025, doi:<a href=\"https://doi.org/10.64898/2025.12.10.692585\">10.64898/2025.12.10.692585</a>.","ista":"Hlavata A, Neuditschko B, Schellhaas U, Plaschka C, Herzog F, Bernecky C. 2025. Structure of cytoplasmic RNA polymerase II. <a href=\"https://doi.org/10.64898/2025.12.10.692585\">10.64898/2025.12.10.692585</a>.","ama":"Hlavata A, Neuditschko B, Schellhaas U, Plaschka C, Herzog F, Bernecky C. Structure of cytoplasmic RNA polymerase II. 2025. doi:<a href=\"https://doi.org/10.64898/2025.12.10.692585\">10.64898/2025.12.10.692585</a>","short":"A. Hlavata, B. Neuditschko, U. Schellhaas, C. Plaschka, F. Herzog, C. Bernecky, (2025).","ieee":"A. Hlavata, B. Neuditschko, U. Schellhaas, C. Plaschka, F. Herzog, and C. Bernecky, “Structure of cytoplasmic RNA polymerase II.” bioRxiv, 2025."},"date_created":"2025-12-11T13:33:27Z","acknowledged_ssus":[{"_id":"LifeSc"},{"_id":"EM-Fac"},{"_id":"ScienComp"},{"_id":"PreCl"}],"day":"10","corr_author":"1","date_updated":"2025-12-15T09:48:22Z","article_processing_charge":"No","department":[{"_id":"CaBe"}],"abstract":[{"text":"RNA polymerase II (Pol II) must be assembled in the cytoplasm before it enters the nucleus, where it transcribes protein-coding genes. Although transcription by Pol II is intensively studied, how this central multi-subunit enzyme is made and the role of dedicated factors remains unclear. Here, we report the integrative structural analysis of a native human Pol II from the cytoplasm captured near the end of biogenesis. The complex contained Gdown1 and three biogenesis factors – RPAP2 and the critical small GTPases GPN1 and GPN3. Cryo-EM analysis of the complex revealed how Gdown1 and RPAP2 associate with Pol II and prevent the premature association of transcription factors. Further biochemical and cryo-EM analysis revealed how RPAP2 recruits GPN1–GPN3 to the complex, and how the assembly of the RPAP2–GPN1–GPN3 complex is controlled by GTP hydrolysis. The combined results uncover a network of interactions that chaperone cytoplasmic Pol II to prevent aberrant interactions, reveal a GTP-controlled switch during the final stages of Pol II biogenesis, and suggest a general mechanism for the action of GPN-loop GTPase family of enzymes.","lang":"eng"}],"title":"Structure of cytoplasmic RNA polymerase II","oa":1},{"oa":1,"abstract":[{"lang":"eng","text":"We characterize all semigroups sandwiched between the semigroup of a Dirichlet form and the semigroup of its active main part. In case the Dirichlet form is regular, we give a more explicit description of the quadratic forms of the sandwiched semigroups in terms of pairs consisting of an open set and a measure on an abstract boundary."}],"ddc":["510"],"has_accepted_license":"1","article_number":"6","article_processing_charge":"Yes (via OA deal)","day":"03","date_created":"2025-12-14T23:02:03Z","quality_controlled":"1","citation":{"chicago":"Keller, Matthias, Daniel Lenz, Marcel Schmidt, Michael Schwarz, and Melchior Wirth. “Boundary Representations of Intermediate Forms between a Regular Dirichlet Form and Its Active Main Part.” <i>Potential Analysis</i>. Springer Nature, 2025. <a href=\"https://doi.org/10.1007/s11118-025-10251-y\">https://doi.org/10.1007/s11118-025-10251-y</a>.","apa":"Keller, M., Lenz, D., Schmidt, M., Schwarz, M., &#38; Wirth, M. (2025). Boundary representations of intermediate forms between a regular Dirichlet form and its active main part. <i>Potential Analysis</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s11118-025-10251-y\">https://doi.org/10.1007/s11118-025-10251-y</a>","mla":"Keller, Matthias, et al. “Boundary Representations of Intermediate Forms between a Regular Dirichlet Form and Its Active Main Part.” <i>Potential Analysis</i>, vol. 64, 6, Springer Nature, 2025, doi:<a href=\"https://doi.org/10.1007/s11118-025-10251-y\">10.1007/s11118-025-10251-y</a>.","ista":"Keller M, Lenz D, Schmidt M, Schwarz M, Wirth M. 2025. Boundary representations of intermediate forms between a regular Dirichlet form and its active main part. Potential Analysis. 64, 6.","short":"M. Keller, D. Lenz, M. Schmidt, M. Schwarz, M. Wirth, Potential Analysis 64 (2025).","ieee":"M. Keller, D. Lenz, M. Schmidt, M. Schwarz, and M. Wirth, “Boundary representations of intermediate forms between a regular Dirichlet form and its active main part,” <i>Potential Analysis</i>, vol. 64. Springer Nature, 2025.","ama":"Keller M, Lenz D, Schmidt M, Schwarz M, Wirth M. Boundary representations of intermediate forms between a regular Dirichlet form and its active main part. <i>Potential Analysis</i>. 2025;64. doi:<a href=\"https://doi.org/10.1007/s11118-025-10251-y\">10.1007/s11118-025-10251-y</a>"},"scopus_import":"1","doi":"10.1007/s11118-025-10251-y","intvolume":"        64","language":[{"iso":"eng"}],"publication":"Potential Analysis","year":"2025","acknowledgement":"Open Access funding enabled and organized by Projekt DEAL. The first three authors acknowledge financial support of the DFG within the priority programme Geometry at Infinity.\r\nM.W. acknowledges financial support by the German Academic Scholarship Foundation, by the Austrian Science Fund (FWF) through grant number F65 and the Esprit Programme [ESP 156], and by the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (grant agreement No 716117).","status":"public","volume":64,"author":[{"last_name":"Keller","full_name":"Keller, Matthias","first_name":"Matthias"},{"first_name":"Daniel","full_name":"Lenz, Daniel","last_name":"Lenz"},{"first_name":"Marcel","last_name":"Schmidt","full_name":"Schmidt, Marcel"},{"full_name":"Schwarz, Michael","last_name":"Schwarz","first_name":"Michael"},{"first_name":"Melchior","id":"88644358-0A0E-11EA-8FA5-49A33DDC885E","last_name":"Wirth","orcid":"0000-0002-0519-4241","full_name":"Wirth, Melchior"}],"external_id":{"arxiv":["2301.01035"]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_published":"2025-12-03T00:00:00Z","department":[{"_id":"JaMa"}],"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"title":"Boundary representations of intermediate forms between a regular Dirichlet form and its active main part","date_updated":"2025-12-15T13:11:24Z","publication_identifier":{"eissn":["1572-929X"],"issn":["0926-2601"]},"OA_place":"publisher","_id":"20814","ec_funded":1,"arxiv":1,"oa_version":"Published Version","publication_status":"epub_ahead","type":"journal_article","publisher":"Springer Nature","OA_type":"hybrid","main_file_link":[{"url":"https://doi.org/10.1007/s11118-025-10251-y","open_access":"1"}],"PlanS_conform":"1","article_type":"original","project":[{"grant_number":"F6504","name":"Taming Complexity in Partial Differential Systems","_id":"fc31cba2-9c52-11eb-aca3-ff467d239cd2"},{"name":"Optimal Transport and Stochastic Dynamics","grant_number":"716117","call_identifier":"H2020","_id":"256E75B8-B435-11E9-9278-68D0E5697425"},{"grant_number":"ESP156_N","name":"Gradient flow techniques for quantum Markov semigroups","_id":"34c6ea2d-11ca-11ed-8bc3-c04f3c502833"}],"month":"12"},{"_id":"20816","pmid":1,"OA_place":"publisher","publication_identifier":{"issn":["1474-7596"],"eissn":["1474-760X"]},"date_updated":"2025-12-15T13:19:41Z","title":"Methylome-wide association studies and epigenetic biomarker development for 133 mass spectrometry-assessed circulating proteins in 14,671 Generation Scotland participants","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"department":[{"_id":"MaRo"}],"month":"12","article_type":"original","OA_type":"gold","type":"journal_article","publisher":"Springer Nature","publication_status":"published","oa_version":"Published Version","intvolume":"        26","doi":"10.1186/s13059-025-03892-0","quality_controlled":"1","citation":{"apa":"Robertson, J. A., Bajzik, J., Vernardis, S., Chybowska, A. D., Mccartney, D. L., Grauslys, A., … Marioni, R. E. (2025). Methylome-wide association studies and epigenetic biomarker development for 133 mass spectrometry-assessed circulating proteins in 14,671 Generation Scotland participants. <i>Genome Biology</i>. Springer Nature. <a href=\"https://doi.org/10.1186/s13059-025-03892-0\">https://doi.org/10.1186/s13059-025-03892-0</a>","chicago":"Robertson, Josephine A., Jakub Bajzik, Spyros Vernardis, Aleksandra D. Chybowska, Daniel L. Mccartney, Arturas Grauslys, Jure Mur, et al. “Methylome-Wide Association Studies and Epigenetic Biomarker Development for 133 Mass Spectrometry-Assessed Circulating Proteins in 14,671 Generation Scotland Participants.” <i>Genome Biology</i>. Springer Nature, 2025. <a href=\"https://doi.org/10.1186/s13059-025-03892-0\">https://doi.org/10.1186/s13059-025-03892-0</a>.","mla":"Robertson, Josephine A., et al. “Methylome-Wide Association Studies and Epigenetic Biomarker Development for 133 Mass Spectrometry-Assessed Circulating Proteins in 14,671 Generation Scotland Participants.” <i>Genome Biology</i>, vol. 26, 417, Springer Nature, 2025, doi:<a href=\"https://doi.org/10.1186/s13059-025-03892-0\">10.1186/s13059-025-03892-0</a>.","ista":"Robertson JA, Bajzik J, Vernardis S, Chybowska AD, Mccartney DL, Grauslys A, Mur J, Smith HM, Campbell A, Drake C, Grant H, Pearce J, Russ TC, Adkin P, White M, Brigden C, Messner CB, Porteous DJ, Hayward C, Cox SR, Zelezniak A, Ralser M, Robinson MR, Marioni RE. 2025. Methylome-wide association studies and epigenetic biomarker development for 133 mass spectrometry-assessed circulating proteins in 14,671 Generation Scotland participants. Genome Biology. 26, 417.","ieee":"J. A. Robertson <i>et al.</i>, “Methylome-wide association studies and epigenetic biomarker development for 133 mass spectrometry-assessed circulating proteins in 14,671 Generation Scotland participants,” <i>Genome Biology</i>, vol. 26. Springer Nature, 2025.","short":"J.A. Robertson, J. Bajzik, S. Vernardis, A.D. Chybowska, D.L. Mccartney, A. Grauslys, J. Mur, H.M. Smith, A. Campbell, C. Drake, H. Grant, J. Pearce, T.C. Russ, P. Adkin, M. White, C. Brigden, C.B. Messner, D.J. Porteous, C. Hayward, S.R. Cox, A. Zelezniak, M. Ralser, M.R. Robinson, R.E. Marioni, Genome Biology 26 (2025).","ama":"Robertson JA, Bajzik J, Vernardis S, et al. Methylome-wide association studies and epigenetic biomarker development for 133 mass spectrometry-assessed circulating proteins in 14,671 Generation Scotland participants. <i>Genome Biology</i>. 2025;26. doi:<a href=\"https://doi.org/10.1186/s13059-025-03892-0\">10.1186/s13059-025-03892-0</a>"},"date_created":"2025-12-14T23:02:04Z","scopus_import":"1","day":"08","article_number":"417","article_processing_charge":"Yes","DOAJ_listed":"1","has_accepted_license":"1","ddc":["570"],"abstract":[{"lang":"eng","text":"Background: DNA methylation (DNAm) can regulate gene expression, and its genome-wide patterns (epigenetic scores or EpiScores) can act as biomarkers for complex traits. The relative stability of methylation profiles may enable better assessment of chronic exposures compared to single time-point protein measures. We present the first large-scale epigenetic study of the highly-abundant serum proteome measured via ultra-high throughput mass spectrometry in 14,671 samples from the Generation Scotland cohort. We further demonstrate the first large-scale comparison of protein EpiScores and their respective proteins as predictors of incident cardiovascular disease.\r\n\r\nResults: Marginal epigenome-wide association models, adjusting for age, sex, measurement batch, estimated white cell proportions, BMI, smoking and methylation principal components, reveal 15,855 significant CpG – protein associations across 125 of 133 proteins PBonferroni < 2.71 × 10-10. Bayesian epigenome-wide association studies of the same 133 proteins reveal 697 CpG-Protein associations (posterior inclusion probability > 0.95). 112 protein EpiScores correlate significantly with their respective protein in a holdout test-set. Of these, sixteen associate significantly with incident all-cause cardiovascular disease (Nevents=191) compared to one measured protein.\r\n\r\nConclusions: We highlight a complex interplay between the blood-based methylome and proteome. Importantly, we show that protein EpiScores correlate with measured proteins and demonstrate that the, as-yet understudied, high-abundance proteome may yield clinically relevant biomarkers. The protein EpiScores demonstrate more significant associations with cardiovascular disease than directly measured proteins, suggesting their potential as clinical biomarkers for monitoring or predicting disease risk. We suggest that biomarker development could be enhanced by the consideration of protein EpiScores alongside measured proteins."}],"oa":1,"file_date_updated":"2025-12-15T13:18:07Z","date_published":"2025-12-08T00:00:00Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file":[{"content_type":"application/pdf","access_level":"open_access","date_created":"2025-12-15T13:18:07Z","checksum":"7c92919af1b5820d01e91e08906a411f","file_size":2206991,"file_name":"2025_GenomeBiology_Robertson.pdf","success":1,"relation":"main_file","creator":"dernst","file_id":"20825","date_updated":"2025-12-15T13:18:07Z"}],"volume":26,"author":[{"full_name":"Robertson, Josephine A.","last_name":"Robertson","first_name":"Josephine A."},{"first_name":"Jakub","full_name":"Bajzik, Jakub","id":"b995e25b-8c4b-11ed-a6d8-f71b7bcd6122","last_name":"Bajzik"},{"full_name":"Vernardis, Spyros","last_name":"Vernardis","first_name":"Spyros"},{"full_name":"Chybowska, Aleksandra D.","last_name":"Chybowska","first_name":"Aleksandra D."},{"full_name":"Mccartney, Daniel L.","last_name":"Mccartney","first_name":"Daniel L."},{"full_name":"Grauslys, Arturas","last_name":"Grauslys","first_name":"Arturas"},{"full_name":"Mur, Jure","last_name":"Mur","first_name":"Jure"},{"full_name":"Smith, Hannah M.","last_name":"Smith","first_name":"Hannah M."},{"first_name":"Archie","full_name":"Campbell, Archie","last_name":"Campbell"},{"last_name":"Drake","full_name":"Drake, Camilla","first_name":"Camilla"},{"last_name":"Grant","full_name":"Grant, Hannah","first_name":"Hannah"},{"first_name":"Jamie","full_name":"Pearce, Jamie","last_name":"Pearce"},{"first_name":"Tom C.","full_name":"Russ, Tom C.","last_name":"Russ"},{"first_name":"Poppy","last_name":"Adkin","full_name":"Adkin, Poppy"},{"full_name":"White, Matthew","last_name":"White","first_name":"Matthew"},{"first_name":"Charles","last_name":"Brigden","full_name":"Brigden, Charles"},{"first_name":"Christoph B.","full_name":"Messner, Christoph B.","last_name":"Messner"},{"first_name":"David J.","full_name":"Porteous, David J.","last_name":"Porteous"},{"first_name":"Caroline","last_name":"Hayward","full_name":"Hayward, Caroline"},{"full_name":"Cox, Simon R.","last_name":"Cox","first_name":"Simon R."},{"first_name":"Aleksej","last_name":"Zelezniak","full_name":"Zelezniak, Aleksej"},{"first_name":"Markus","full_name":"Ralser, Markus","last_name":"Ralser"},{"first_name":"Matthew Richard","full_name":"Robinson, Matthew Richard","orcid":"0000-0001-8982-8813","id":"E5D42276-F5DA-11E9-8E24-6303E6697425","last_name":"Robinson"},{"first_name":"Riccardo E.","full_name":"Marioni, Riccardo E.","last_name":"Marioni"}],"external_id":{"pmid":["41361833"]},"acknowledgement":"Generation Scotland received core support from the Chief Scientist Office of the Scottish Government Health Directorates [CZD/16/6] and the Scottish Funding Council [HR03006] and is currently supported by the Wellcome Trust [216767/Z/19/Z]. Genotyping of the Generation Scotland samples was carried out by the Genetics Core Laboratory at the Edinburgh Clinical Research Facility, University of Edinburgh, Scotland and was funded by the Medical Research Council UK and the Wellcome Trust (Wellcome Trust Strategic Award “STratifying Resilience and Depression Longitudinally” (STRADL) Reference 104036/Z/14/Z). The DNA methylation profiling and analysis was supported by Wellcome Investigator Award 220857/Z/20/Z and Grant 104036/Z/14/Z (PI: Prof AM McIntosh) and through funding from NARSAD (Ref: 27404; awardee: Dr DM Howard) and the Royal College of Physicians of Edinburgh (Sim Fellowship; Awardee: Prof HC Whalley).\r\nJAR is a University of Edinburgh Clinical Academic Track PhD student, supported by the Wellcome Trust (319878/Z/24/Z). ADC was supported by a Medical Research Council PhD Studentship in Precision Medicine with funding from the Medical Research Council Doctoral Training Program and the University of Edinburgh College of Medicine and Veterinary Medicine. HMS is a student on the University of Edinburgh Translational Neuroscience PhD programme funded by the Wellcome Trust (218493/Z/19/Z). CH was funded by MRC Human Genetics Unit program (QTL in Health and Disease) (grant U.MC_UU_00007/10). S.R.C. is supported by a Sir Henry Dale Fellowship jointly funded by the Wellcome Trust and the Royal Society (221890/Z/20/Z). JM and REM were supported by Alzheimer’s Society project grant AS-PG-19b-010.","status":"public","year":"2025","language":[{"iso":"eng"}],"publication":"Genome Biology"},{"ddc":["000"],"abstract":[{"text":"We present Mechanistic PDE Networks -- a model for discovery of governing partial differential equations from data. Mechanistic PDE Networks represent spatiotemporal data as space-time dependent linear partial differential equations in neural network hidden representations. The represented PDEs are then solved and decoded for specific tasks. The learned PDE representations naturally express the spatiotemporal dynamics in data in neural network hidden space, enabling increased modeling power. Solving the PDE representations in a compute and memory-efficient way, however, is a significant challenge. We develop a native, GPU-capable, parallel, sparse and differentiable multigrid solver specialized for linear partial differential equations that acts as a module in Mechanistic PDE Networks. Leveraging the PDE solver we propose a discovery architecture that can discovers nonlinear PDEs in complex settings, while being robust to noise. We validate PDE discovery on a number of PDEs including reaction-diffusion and Navier-Stokes equations.","lang":"eng"}],"oa":1,"file_date_updated":"2025-12-16T12:21:49Z","conference":{"start_date":"2025-07-13","end_date":"2025-07-19","name":"ICML: International Conference on Machine Learning","location":"Vancouver, Canada"},"article_processing_charge":"No","has_accepted_license":"1","citation":{"mla":"Pervez, Adeel A., et al. “Mechanistic PDE Networks for Discovery of Governing Equations.” <i>42nd International Conference on Machine Learning</i>, vol. 267, ML Research Press, 2025, pp. 48962–73.","chicago":"Pervez, Adeel A, Efstratios Gavves, and Francesco Locatello. “Mechanistic PDE Networks for Discovery of Governing Equations.” In <i>42nd International Conference on Machine Learning</i>, 267:48962–73. ML Research Press, 2025.","apa":"Pervez, A. A., Gavves, E., &#38; Locatello, F. (2025). Mechanistic PDE networks for discovery of governing equations. In <i>42nd International Conference on Machine Learning</i> (Vol. 267, pp. 48962–48973). Vancouver, Canada: ML Research Press.","ista":"Pervez AA, Gavves E, Locatello F. 2025. Mechanistic PDE networks for discovery of governing equations. 42nd International Conference on Machine Learning. ICML: International Conference on Machine Learning, PMLR, vol. 267, 48962–48973.","ieee":"A. A. Pervez, E. Gavves, and F. Locatello, “Mechanistic PDE networks for discovery of governing equations,” in <i>42nd International Conference on Machine Learning</i>, Vancouver, Canada, 2025, vol. 267, pp. 48962–48973.","short":"A.A. Pervez, E. Gavves, F. Locatello, in:, 42nd International Conference on Machine Learning, ML Research Press, 2025, pp. 48962–48973.","ama":"Pervez AA, Gavves E, Locatello F. Mechanistic PDE networks for discovery of governing equations. In: <i>42nd International Conference on Machine Learning</i>. Vol 267. ML Research Press; 2025:48962-48973."},"date_created":"2025-12-14T23:02:04Z","quality_controlled":"1","scopus_import":"1","day":"01","corr_author":"1","alternative_title":["PMLR"],"related_material":{"link":[{"relation":"software","url":"https://github.com/ alpz/mech-nn-discovery-pde"}]},"intvolume":"       267","publication":"42nd International Conference on Machine Learning","page":"48962-48973","language":[{"iso":"eng"}],"year":"2025","status":"public","acknowledgement":"AP. This project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 101034413.\r\nFL. This research was funded in whole or in part by the Austrian Science Fund (FWF) 10.55776/COE12. For open access purposes, the author has applied a CC BY public\r\ncopyright license to any author accepted manuscript version arising from this submission.","date_published":"2025-05-01T00:00:00Z","file":[{"file_id":"20827","creator":"dernst","relation":"main_file","date_updated":"2025-12-16T12:21:49Z","checksum":"933cb673fb41416f537278fb990df6c3","date_created":"2025-12-16T12:21:49Z","content_type":"application/pdf","access_level":"open_access","success":1,"file_name":"2025_ICML_Pervez.pdf","file_size":993381}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","volume":267,"external_id":{"arxiv":["2502.18377"]},"author":[{"id":"fca6d90c-d47f-11ee-bc87-93ff51604981","last_name":"Pervez","full_name":"Pervez, Adeel A","first_name":"Adeel A"},{"full_name":"Gavves, Efstratios","last_name":"Gavves","first_name":"Efstratios"},{"full_name":"Locatello, Francesco","orcid":"0000-0002-4850-0683","id":"26cfd52f-2483-11ee-8040-88983bcc06d4","last_name":"Locatello","first_name":"Francesco"}],"department":[{"_id":"FrLo"}],"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"title":"Mechanistic PDE networks for discovery of governing equations","date_updated":"2025-12-16T12:24:55Z","OA_place":"publisher","publication_identifier":{"eissn":["2640-3498"]},"_id":"20817","ec_funded":1,"arxiv":1,"publisher":"ML Research Press","type":"conference","publication_status":"published","oa_version":"Published Version","OA_type":"gold","project":[{"name":"IST-BRIDGE: International postdoctoral program","grant_number":"101034413","call_identifier":"H2020","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c"}],"month":"05"},{"type":"journal_article","publisher":"Wiley","publication_status":"epub_ahead","oa_version":"None","month":"12","project":[{"call_identifier":"H2020","grant_number":"742985","name":"Tracing Evolution of Auxin Transport and Polarity in Plants","_id":"261099A6-B435-11E9-9278-68D0E5697425"}],"article_type":"comment","OA_type":"closed access","date_updated":"2025-12-15T13:56:26Z","title":"The miniW domain directs polarized membrane localization of non-canonical PINs in Marchantia polymorpha","department":[{"_id":"JiFr"}],"ec_funded":1,"_id":"20818","pmid":1,"publication_identifier":{"issn":["0140-7791"],"eissn":["1365-3040"]},"year":"2025","language":[{"iso":"eng"}],"publication":"Plant Cell and Environment","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_published":"2025-12-03T00:00:00Z","author":[{"first_name":"Han","id":"19BDF720-25A0-11EA-AC6E-928F3DDC885E","last_name":"Tang","full_name":"Tang, Han","orcid":"0000-0001-6152-6637"},{"full_name":"Smoljan, Adrijana","id":"cced8a85-223e-11ed-af04-b0596c55053b","last_name":"Smoljan","first_name":"Adrijana"},{"full_name":"Zou, Minxia","id":"5c243f41-03f3-11ec-841c-96faf48a7ef9","last_name":"Zou","first_name":"Minxia"},{"last_name":"Zhang","id":"3B6137F2-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-2627-6956","full_name":"Zhang, Yuzhou","first_name":"Yuzhou"},{"first_name":"Kuan Ju","full_name":"Lu, Kuan Ju","last_name":"Lu"},{"first_name":"Jiří","full_name":"Friml, Jiří","orcid":"0000-0002-8302-7596","id":"4159519E-F248-11E8-B48F-1D18A9856A87","last_name":"Friml"}],"external_id":{"pmid":["41340422"]},"acknowledgement":"The authors sincerely thank Dr. Shutang Tan for experimental support and Dr. Barbara Kloeckener Gruissem for critical reading and constructive advice on the manuscript. This study was supported by the European Research Council Advanced Grant (ETAP-742985 to H.T. and J.F.), by the Ministry of Science and Technology (grant 112-2636-B-005-001- to K.-J.L.), and by the Ministry of Education (grant MOE-109-YSFAG-0006-001-P1 to K.-J.L.).","status":"public","article_processing_charge":"No","abstract":[{"text":"This study demonstrates that Marchantia non-canonical PINs are predominantly localized to the plasma membrane, with MpPINX and MpPINW exhibiting asymmetric distribution.\r\nA newly identified miniW domain within the MpPINW hydrophilic loop governs subcellular trafficking and asymmetric PM localization of non-canonical PINs in Marchantia.","lang":"eng"}],"doi":"10.1111/pce.70295","scopus_import":"1","quality_controlled":"1","date_created":"2025-12-14T23:02:05Z","citation":{"ama":"Tang H, Smoljan A, Zou M, Zhang Y, Lu KJ, Friml J. The miniW domain directs polarized membrane localization of non-canonical PINs in Marchantia polymorpha. <i>Plant Cell and Environment</i>. 2025. doi:<a href=\"https://doi.org/10.1111/pce.70295\">10.1111/pce.70295</a>","ieee":"H. Tang, A. Smoljan, M. Zou, Y. Zhang, K. J. Lu, and J. Friml, “The miniW domain directs polarized membrane localization of non-canonical PINs in Marchantia polymorpha,” <i>Plant Cell and Environment</i>. Wiley, 2025.","short":"H. Tang, A. Smoljan, M. Zou, Y. Zhang, K.J. Lu, J. Friml, Plant Cell and Environment (2025).","ista":"Tang H, Smoljan A, Zou M, Zhang Y, Lu KJ, Friml J. 2025. The miniW domain directs polarized membrane localization of non-canonical PINs in Marchantia polymorpha. Plant Cell and Environment.","apa":"Tang, H., Smoljan, A., Zou, M., Zhang, Y., Lu, K. J., &#38; Friml, J. (2025). The miniW domain directs polarized membrane localization of non-canonical PINs in Marchantia polymorpha. <i>Plant Cell and Environment</i>. Wiley. <a href=\"https://doi.org/10.1111/pce.70295\">https://doi.org/10.1111/pce.70295</a>","chicago":"Tang, Han, Adrijana Smoljan, Minxia Zou, Yuzhou Zhang, Kuan Ju Lu, and Jiří Friml. “The MiniW Domain Directs Polarized Membrane Localization of Non-Canonical PINs in Marchantia Polymorpha.” <i>Plant Cell and Environment</i>. Wiley, 2025. <a href=\"https://doi.org/10.1111/pce.70295\">https://doi.org/10.1111/pce.70295</a>.","mla":"Tang, Han, et al. “The MiniW Domain Directs Polarized Membrane Localization of Non-Canonical PINs in Marchantia Polymorpha.” <i>Plant Cell and Environment</i>, Wiley, 2025, doi:<a href=\"https://doi.org/10.1111/pce.70295\">10.1111/pce.70295</a>."},"day":"03"},{"title":"On heroes in digraphs with forbidden induced forests","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"department":[{"_id":"MaKw"}],"date_updated":"2025-05-19T14:06:00Z","publication_identifier":{"issn":["0195-6698"]},"OA_place":"publisher","isi":1,"_id":"18753","arxiv":1,"oa_version":"Published Version","type":"journal_article","publisher":"Elsevier","publication_status":"published","OA_type":"hybrid","article_type":"original","month":"03","project":[{"_id":"bd95085b-d553-11ed-ba76-e55d3349be45","grant_number":"101076777","name":"Randomness and structure in combinatorics"}],"oa":1,"file_date_updated":"2025-04-16T09:16:25Z","ddc":["510"],"abstract":[{"lang":"eng","text":"We continue a line of research which studies which hereditary families of digraphs have bounded dichromatic number. For a class of digraphs  C, a hero in  C  is any digraph  H\r\n  such that  H -free digraphs in  C  have bounded dichromatic number. We show that if  F\r\n  is an oriented star of degree at least five, the only heroes for the class of  F -free digraphs are transitive tournaments. For oriented stars  F  of degree exactly four, we show the only heroes in  F -free digraphs are transitive tournaments, or possibly special joins of transitive tournaments. Aboulker et al. characterized the set of heroes of  {H,K1+P2→} -free digraphs almost completely, and we show the same characterization for the class of  {H,rK1+P3→} -free digraphs. Lastly, we show that if we forbid two \"valid\" orientations of brooms, then every transitive tournament is a hero for this class of digraphs."}],"has_accepted_license":"1","article_number":"104104","article_processing_charge":"Yes (in subscription journal)","day":"01","corr_author":"1","date_created":"2025-01-05T23:01:55Z","quality_controlled":"1","citation":{"ama":"Carbonero A, Koerts H, Moore B, Spirkl S. On heroes in digraphs with forbidden induced forests. <i>European Journal of Combinatorics</i>. 2025;125. doi:<a href=\"https://doi.org/10.1016/j.ejc.2024.104104\">10.1016/j.ejc.2024.104104</a>","ieee":"A. Carbonero, H. Koerts, B. Moore, and S. Spirkl, “On heroes in digraphs with forbidden induced forests,” <i>European Journal of Combinatorics</i>, vol. 125. Elsevier, 2025.","short":"A. Carbonero, H. Koerts, B. Moore, S. Spirkl, European Journal of Combinatorics 125 (2025).","chicago":"Carbonero, Alvaro, Hidde Koerts, Benjamin Moore, and Sophie Spirkl. “On Heroes in Digraphs with Forbidden Induced Forests.” <i>European Journal of Combinatorics</i>. Elsevier, 2025. <a href=\"https://doi.org/10.1016/j.ejc.2024.104104\">https://doi.org/10.1016/j.ejc.2024.104104</a>.","apa":"Carbonero, A., Koerts, H., Moore, B., &#38; Spirkl, S. (2025). On heroes in digraphs with forbidden induced forests. <i>European Journal of Combinatorics</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.ejc.2024.104104\">https://doi.org/10.1016/j.ejc.2024.104104</a>","mla":"Carbonero, Alvaro, et al. “On Heroes in Digraphs with Forbidden Induced Forests.” <i>European Journal of Combinatorics</i>, vol. 125, 104104, Elsevier, 2025, doi:<a href=\"https://doi.org/10.1016/j.ejc.2024.104104\">10.1016/j.ejc.2024.104104</a>.","ista":"Carbonero A, Koerts H, Moore B, Spirkl S. 2025. On heroes in digraphs with forbidden induced forests. European Journal of Combinatorics. 125, 104104."},"scopus_import":"1","doi":"10.1016/j.ejc.2024.104104","intvolume":"       125","language":[{"iso":"eng"}],"publication":"European Journal of Combinatorics","year":"2025","acknowledgement":"We thank the anonymous referees for their careful proofreading which helped improve the presentation of this paper. We also thank one of the anonymous referees for pointing out our construction implies Theorem 1.7!\r\nBenjamin Moore finished this project while a postdoctoral researcher at Charles University, and was supported by project 22-17398S (Flows and cycles in graphs on surfaces) of the Czech Science Foundation. Benjamin Moore is currently funded by RANDSTRUCT No. 101076777, and appreciates the gracious support. We acknowledge the support of the Natural Sciences and Engineering Research Council of Canada (NSERC), [funding reference number RGPIN-2020-03912]. Cette recherche a été financée par le Conseil de recherches en sciences naturelles et en génie du Canada (CRSNG), [numéro de référence RGPIN-2020-03912]. This project was funded in part by the Government of Ontario .","status":"public","volume":125,"author":[{"first_name":"Alvaro","last_name":"Carbonero","full_name":"Carbonero, Alvaro"},{"first_name":"Hidde","full_name":"Koerts, Hidde","last_name":"Koerts"},{"full_name":"Moore, Benjamin","last_name":"Moore","id":"6dc1a1be-bf1c-11ed-8d2b-d044840f49d6","first_name":"Benjamin"},{"first_name":"Sophie","full_name":"Spirkl, Sophie","last_name":"Spirkl"}],"external_id":{"arxiv":["2306.04710"],"isi":["001400113700001"]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_published":"2025-03-01T00:00:00Z","file":[{"file_size":1110657,"file_name":"2025_EuropJournCombinatorics_Carbonero.pdf","success":1,"date_created":"2025-04-16T09:16:25Z","access_level":"open_access","content_type":"application/pdf","checksum":"2c75f78f40ebb93d16fe3765bda2905a","date_updated":"2025-04-16T09:16:25Z","relation":"main_file","file_id":"19577","creator":"dernst"}]}]