[{"article_type":"original","oa":1,"_id":"20045","oa_version":"Preprint","department":[{"_id":"RoSe"}],"external_id":{"arxiv":["2305.06722"]},"author":[{"last_name":"Falconi","first_name":"Marco","full_name":"Falconi, Marco"},{"last_name":"Lampart","first_name":"Jonas","full_name":"Lampart, Jonas"},{"full_name":"Leopold, Nikolai","last_name":"Leopold","first_name":"Nikolai"},{"id":"cbddacee-2b11-11eb-a02e-a2e14d04e52d","full_name":"Mitrouskas, David Johannes","last_name":"Mitrouskas","first_name":"David Johannes"}],"abstract":[{"lang":"eng","text":"We consider the time evolution of the renormalized Nelson model, which describes N bosons linearly coupled to a quantized scalar field, in the mean-field limit of many particles N≫1 with coupling constant proportional to N^−1/2. First, we show that initial states exhibiting Bose–Einstein condensation for the particles and approximating a coherent state for the quantum field retain their structure under the many-body time evolution. Concretely, the dynamics of the reduced densities are approximated by solutions of two coupled PDEs, the Schrödinger–Klein–Gordon equations. Second, we construct a renormalized Bogoliubov evolution that describes the quantum fluctuations around the Schrödinger–Klein–Gordon equations. This evolution is used to extend the approximation of the evolved many-body state to the full norm topology. In summary, we provide a comprehensive analysis of the Nelson model that reveals the role of renormalization in the mean-field Bogoliubov theory."}],"date_updated":"2025-12-30T07:31:09Z","year":"2025","publication_status":"epub_ahead","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"short":"M. Falconi, J. Lampart, N. Leopold, D.J. Mitrouskas, Annales de l’Institut Henri Poincaré C (2025).","apa":"Falconi, M., Lampart, J., Leopold, N., &#38; Mitrouskas, D. J. (2025). Renormalized Bogoliubov theory for the Nelson model. <i>Annales de l’Institut Henri Poincaré C</i>. EMS Press. <a href=\"https://doi.org/10.4171/aihpc/154\">https://doi.org/10.4171/aihpc/154</a>","ista":"Falconi M, Lampart J, Leopold N, Mitrouskas DJ. 2025. Renormalized Bogoliubov theory for the Nelson model. Annales de l’Institut Henri Poincaré C.","mla":"Falconi, Marco, et al. “Renormalized Bogoliubov Theory for the Nelson Model.” <i>Annales de l’Institut Henri Poincaré C</i>, EMS Press, 2025, doi:<a href=\"https://doi.org/10.4171/aihpc/154\">10.4171/aihpc/154</a>.","chicago":"Falconi, Marco, Jonas Lampart, Nikolai Leopold, and David Johannes Mitrouskas. “Renormalized Bogoliubov Theory for the Nelson Model.” <i>Annales de l’Institut Henri Poincaré C</i>. EMS Press, 2025. <a href=\"https://doi.org/10.4171/aihpc/154\">https://doi.org/10.4171/aihpc/154</a>.","ieee":"M. Falconi, J. Lampart, N. Leopold, and D. J. Mitrouskas, “Renormalized Bogoliubov theory for the Nelson model,” <i>Annales de l’Institut Henri Poincaré C</i>. EMS Press, 2025.","ama":"Falconi M, Lampart J, Leopold N, Mitrouskas DJ. Renormalized Bogoliubov theory for the Nelson model. <i>Annales de l’Institut Henri Poincaré C</i>. 2025. doi:<a href=\"https://doi.org/10.4171/aihpc/154\">10.4171/aihpc/154</a>"},"date_published":"2025-05-06T00:00:00Z","publisher":"EMS Press","OA_place":"repository","language":[{"iso":"eng"}],"month":"05","publication":"Annales de l'Institut Henri Poincaré C","quality_controlled":"1","article_processing_charge":"No","publication_identifier":{"issn":["0294-1449"],"eissn":["1873-1430"]},"title":"Renormalized Bogoliubov theory for the Nelson model","OA_type":"green","DOAJ_listed":"1","day":"06","type":"journal_article","status":"public","arxiv":1,"main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2305.06722","open_access":"1"}],"date_created":"2025-07-21T07:59:16Z","doi":"10.4171/aihpc/154"},{"article_processing_charge":"Yes","quality_controlled":"1","publication":"Electronic Journal of Probability","month":"06","language":[{"iso":"eng"}],"publisher":"Institute of Mathematical Statistics","OA_place":"publisher","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"intvolume":"        30","date_published":"2025-06-27T00:00:00Z","citation":{"mla":"Campbell, Andrew J., et al. “Extreme Eigenvalues of Laplacian Random Matrices with Gaussian Entries.” <i>Electronic Journal of Probability</i>, vol. 30, Institute of Mathematical Statistics, 2025, pp. 1–52, doi:<a href=\"https://doi.org/10.1214/25-ejp1366\">10.1214/25-ejp1366</a>.","ama":"Campbell AJ, Luh K, O’Rourke S, Arenas-Velilla S, Perez-Abreu V. Extreme eigenvalues of Laplacian random matrices with Gaussian entries. <i>Electronic Journal of Probability</i>. 2025;30:1-52. doi:<a href=\"https://doi.org/10.1214/25-ejp1366\">10.1214/25-ejp1366</a>","chicago":"Campbell, Andrew J, Kyle Luh, Sean O’Rourke, Santiago Arenas-Velilla, and Victor Perez-Abreu. “Extreme Eigenvalues of Laplacian Random Matrices with Gaussian Entries.” <i>Electronic Journal of Probability</i>. Institute of Mathematical Statistics, 2025. <a href=\"https://doi.org/10.1214/25-ejp1366\">https://doi.org/10.1214/25-ejp1366</a>.","ieee":"A. J. Campbell, K. Luh, S. O’Rourke, S. Arenas-Velilla, and V. Perez-Abreu, “Extreme eigenvalues of Laplacian random matrices with Gaussian entries,” <i>Electronic Journal of Probability</i>, vol. 30. Institute of Mathematical Statistics, pp. 1–52, 2025.","short":"A.J. Campbell, K. Luh, S. O’Rourke, S. Arenas-Velilla, V. Perez-Abreu, Electronic Journal of Probability 30 (2025) 1–52.","ista":"Campbell AJ, Luh K, O’Rourke S, Arenas-Velilla S, Perez-Abreu V. 2025. Extreme eigenvalues of Laplacian random matrices with Gaussian entries. Electronic Journal of Probability. 30, 1–52.","apa":"Campbell, A. J., Luh, K., O’Rourke, S., Arenas-Velilla, S., &#38; Perez-Abreu, V. (2025). Extreme eigenvalues of Laplacian random matrices with Gaussian entries. <i>Electronic Journal of Probability</i>. Institute of Mathematical Statistics. <a href=\"https://doi.org/10.1214/25-ejp1366\">https://doi.org/10.1214/25-ejp1366</a>"},"date_created":"2025-07-21T08:06:18Z","arxiv":1,"doi":"10.1214/25-ejp1366","status":"public","has_accepted_license":"1","type":"journal_article","day":"27","DOAJ_listed":"1","acknowledgement":"The authors thank Santiago Arenas-Velilla and Victor Pérez-Abreu for comments on an earlier draft of this manuscript and for contributing Appendix A. The authors also thank Yan Fyodorov for providing useful references.\r\nA. Campbell was partially supported by the European Research Council Grant No. 101020331. K. Luh was supported in part by the Ralph E. Powe Junior Faculty Enhancement Award and Simons Foundation Grant MP-TSM-00001988. S. O’Rourke has been supported in part by NSF CAREER grant DMS-2143142. ","OA_type":"gold","title":"Extreme eigenvalues of Laplacian random matrices with Gaussian entries","corr_author":"1","ddc":["510"],"publication_identifier":{"eissn":["1083-6489"]},"abstract":[{"text":"A Laplacian matrix is a real symmetric matrix whose row and column sums are zero. We investigate the limiting distribution of the largest eigenvalues of a Laplacian random matrix with Gaussian entries. Unlike many classical matrix ensembles, this random matrix model contains dependent entries. Our main results show that the extreme eigenvalues of this model exhibit Poisson statistics. In particular, after properly shifting and scaling, we show that the largest eigenvalue converges to the Gumbel distribution as the dimension of the matrix tends to infinity. While the largest diagonal entry is also shown to have Gumbel fluctuations, there is a rather surprising difference between its deterministic centering term and the centering term required for the largest eigenvalues.","lang":"eng"}],"author":[{"full_name":"Campbell, Andrew J","id":"582b06a9-1f1c-11ee-b076-82ffce00dde4","first_name":"Andrew J","last_name":"Campbell"},{"full_name":"Luh, Kyle","last_name":"Luh","first_name":"Kyle"},{"full_name":"O’Rourke, Sean","first_name":"Sean","last_name":"O’Rourke"},{"full_name":"Arenas-Velilla, Santiago","last_name":"Arenas-Velilla","first_name":"Santiago"},{"full_name":"Perez-Abreu, Victor","first_name":"Victor","last_name":"Perez-Abreu"}],"external_id":{"arxiv":["2211.17175"],"isi":["001540927000024"]},"department":[{"_id":"LaEr"}],"oa_version":"Published Version","_id":"20046","project":[{"name":"Random matrices beyond Wigner-Dyson-Mehta","call_identifier":"H2020","grant_number":"101020331","_id":"62796744-2b32-11ec-9570-940b20777f1d"}],"ec_funded":1,"oa":1,"article_type":"original","page":"1-52","isi":1,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","file":[{"access_level":"open_access","date_created":"2025-07-23T08:35:53Z","checksum":"a7a9f2bb7a6295786c16d4c7bd612621","creator":"dernst","success":1,"file_name":"2025_ElectronJourProbab_Campbell.pdf","file_id":"20069","content_type":"application/pdf","relation":"main_file","date_updated":"2025-07-23T08:35:53Z","file_size":580591}],"publication_status":"published","year":"2025","volume":30,"date_updated":"2025-09-30T14:07:19Z","file_date_updated":"2025-07-23T08:35:53Z"},{"acknowledgement":"We thank all the Heisenberg lab members for discussions and comments on the manuscript, and the Bioimaging and Life Science facilities of ISTA for support with microscopy and fish maintenance, respectively. This study was funded by a Japan Society for the Promotion of Science (JSPS) Overseas Research Fellowship and a Japan Science and Technology Agency PRESTO grant (JPMJPR214B) to Y.M. Open Access funding provided by the Japan Science and Technology Agency. Deposited in PMC for immediate release.","day":"27","type":"journal_article","status":"public","has_accepted_license":"1","date_created":"2025-07-21T08:10:32Z","doi":"10.1242/dev.204261","scopus_import":"1","publication_identifier":{"eissn":["1477-9129"],"issn":["0950-1991"]},"corr_author":"1","ddc":["570"],"title":"Hoxb genes determine the timing of cell ingression by regulating cell surface fluctuations during zebrafish gastrulation","issue":"12","OA_type":"hybrid","OA_place":"publisher","publisher":"The Company of Biologists","language":[{"iso":"eng"}],"month":"06","pmid":1,"publication":"Development","quality_controlled":"1","article_processing_charge":"Yes (via OA deal)","citation":{"short":"Y. Moriyama, T. Mitsui, C.-P.J. Heisenberg, Development 152 (2025).","ista":"Moriyama Y, Mitsui T, Heisenberg C-PJ. 2025. Hoxb genes determine the timing of cell ingression by regulating cell surface fluctuations during zebrafish gastrulation. Development. 152(12), dev204261.","apa":"Moriyama, Y., Mitsui, T., &#38; Heisenberg, C.-P. J. (2025). Hoxb genes determine the timing of cell ingression by regulating cell surface fluctuations during zebrafish gastrulation. <i>Development</i>. The Company of Biologists. <a href=\"https://doi.org/10.1242/dev.204261\">https://doi.org/10.1242/dev.204261</a>","mla":"Moriyama, Yuuta, et al. “Hoxb Genes Determine the Timing of Cell Ingression by Regulating Cell Surface Fluctuations during Zebrafish Gastrulation.” <i>Development</i>, vol. 152, no. 12, dev204261, The Company of Biologists, 2025, doi:<a href=\"https://doi.org/10.1242/dev.204261\">10.1242/dev.204261</a>.","chicago":"Moriyama, Yuuta, Toshiyuki Mitsui, and Carl-Philipp J Heisenberg. “Hoxb Genes Determine the Timing of Cell Ingression by Regulating Cell Surface Fluctuations during Zebrafish Gastrulation.” <i>Development</i>. The Company of Biologists, 2025. <a href=\"https://doi.org/10.1242/dev.204261\">https://doi.org/10.1242/dev.204261</a>.","ieee":"Y. Moriyama, T. Mitsui, and C.-P. J. Heisenberg, “Hoxb genes determine the timing of cell ingression by regulating cell surface fluctuations during zebrafish gastrulation,” <i>Development</i>, vol. 152, no. 12. The Company of Biologists, 2025.","ama":"Moriyama Y, Mitsui T, Heisenberg C-PJ. Hoxb genes determine the timing of cell ingression by regulating cell surface fluctuations during zebrafish gastrulation. <i>Development</i>. 2025;152(12). doi:<a href=\"https://doi.org/10.1242/dev.204261\">10.1242/dev.204261</a>"},"date_published":"2025-06-27T00:00:00Z","intvolume":"       152","article_number":"dev204261","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"year":"2025","volume":152,"publication_status":"published","file":[{"file_name":"2025_Development_Moriyama.pdf","relation":"main_file","content_type":"application/pdf","file_id":"20070","file_size":25935563,"date_updated":"2025-07-23T08:43:01Z","access_level":"open_access","checksum":"808d8aa28df79d23fb661838d1fdc1be","date_created":"2025-07-23T08:43:01Z","success":1,"creator":"dernst"}],"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","isi":1,"file_date_updated":"2025-07-23T08:43:01Z","date_updated":"2025-09-30T14:07:51Z","PlanS_conform":"1","department":[{"_id":"CaHe"}],"external_id":{"isi":["001525252300001"],"pmid":["40576478"]},"author":[{"id":"addc9b8c-67a0-11f0-b374-a2e094825470","orcid":"0000-0002-2853-8051","full_name":"Moriyama, Yuuta","last_name":"Moriyama","first_name":"Yuuta"},{"first_name":"Toshiyuki","last_name":"Mitsui","full_name":"Mitsui, Toshiyuki"},{"full_name":"Heisenberg, Carl-Philipp J","orcid":"0000-0002-0912-4566","id":"39427864-F248-11E8-B48F-1D18A9856A87","first_name":"Carl-Philipp J","last_name":"Heisenberg"}],"abstract":[{"lang":"eng","text":"During embryonic development, cell behaviors need to be tightly regulated in time and space. Yet how the temporal and spatial regulations of cell behaviors are interconnected during embryonic development remains elusive. To address this, we turned to zebrafish gastrulation, the process whereby dynamic cell behaviors generate the three principal germ layers of the early embryo. Here, we show that Hoxb cluster genes are expressed in a temporally collinear manner at the blastoderm margin, where mesodermal and endodermal (mesendoderm) progenitor cells are specified and ingress to form mesendoderm/hypoblast. Functional analysis shows that these Hoxb genes regulate the timing of cell ingression: under- or overexpression of Hoxb genes perturb the timing of mesendoderm cell ingression and, consequently, the positioning of these cells along the forming anterior-posterior body axis after gastrulation. Finally, we found that Hoxb genes control the timing of mesendoderm ingression by regulating cellular bleb formation and cell surface fluctuations in the ingressing cells. Collectively, our findings suggest that Hoxb genes interconnect the temporal and spatial pattern of cell behaviors during zebrafish gastrulation by controlling cell surface fluctuations."}],"article_type":"original","oa":1,"_id":"20048","oa_version":"Published Version"},{"department":[{"_id":"JaMa"}],"author":[{"full_name":"Khudiakova, Kseniia","orcid":"0000-0002-6246-1465","id":"4E6DC800-AE37-11E9-AC72-31CAE5697425","first_name":"Kseniia","last_name":"Khudiakova"},{"id":"4C5696CE-F248-11E8-B48F-1D18A9856A87","full_name":"Maas, Jan","orcid":"0000-0002-0845-1338","last_name":"Maas","first_name":"Jan"},{"full_name":"Pedrotti, Francesco","id":"d3ac8ac6-dc8d-11ea-abe3-e2a9628c4c3c","first_name":"Francesco","last_name":"Pedrotti"}],"external_id":{"arxiv":["2402.04151"],"isi":["001523520000012"]},"abstract":[{"lang":"eng","text":"We prove upper bounds on the L∞-Wasserstein distance from optimal transport between strongly log-concave probability densities and log-Lipschitz perturbations. In the simplest setting, such a bound amounts to a transport-information inequality involving the L∞-Wasserstein metric and the relative L∞-Fisher information. We show that this inequality can be sharpened significantly in situations where the involved densities are anisotropic. Our proof is based on probabilistic techniques using Langevin dynamics. As an application of these results, we obtain sharp exponential rates of convergence in Fisher’s infinitesimal model from quantitative genetics, generalising recent results by Calvez, Poyato, and Santambrogio in dimension 1 to arbitrary dimensions."}],"article_type":"original","page":"1913-1940","oa":1,"_id":"20050","project":[{"_id":"fc31cba2-9c52-11eb-aca3-ff467d239cd2","grant_number":"F6504","name":"Taming Complexity in Partial Differential Systems"},{"grant_number":"26293","_id":"34d33d68-11ca-11ed-8bc3-ec13763c0ca8","name":"The impact of deleterious mutations on small populations"}],"oa_version":"Preprint","year":"2025","volume":35,"publication_status":"published","related_material":{"record":[{"id":"17352","relation":"earlier_version","status":"public"}]},"isi":1,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","date_updated":"2025-09-30T14:12:48Z","language":[{"iso":"eng"}],"publisher":"Institute of Mathematical Statistics","OA_place":"repository","month":"06","publication":"The Annals of Applied Probability","article_processing_charge":"No","quality_controlled":"1","date_published":"2025-06-01T00:00:00Z","citation":{"ama":"Khudiakova K, Maas J, Pedrotti F. L∞-optimal transport of anisotropic log-concave measures and exponential convergence in Fisher’s infinitesimal model. <i>The Annals of Applied Probability</i>. 2025;35(3):1913-1940. doi:<a href=\"https://doi.org/10.1214/25-aap2162\">10.1214/25-aap2162</a>","chicago":"Khudiakova, Kseniia, Jan Maas, and Francesco Pedrotti. “L∞-Optimal Transport of Anisotropic Log-Concave Measures and Exponential Convergence in Fisher’s Infinitesimal Model.” <i>The Annals of Applied Probability</i>. Institute of Mathematical Statistics, 2025. <a href=\"https://doi.org/10.1214/25-aap2162\">https://doi.org/10.1214/25-aap2162</a>.","ieee":"K. Khudiakova, J. Maas, and F. Pedrotti, “L∞-optimal transport of anisotropic log-concave measures and exponential convergence in Fisher’s infinitesimal model,” <i>The Annals of Applied Probability</i>, vol. 35, no. 3. Institute of Mathematical Statistics, pp. 1913–1940, 2025.","mla":"Khudiakova, Kseniia, et al. “L∞-Optimal Transport of Anisotropic Log-Concave Measures and Exponential Convergence in Fisher’s Infinitesimal Model.” <i>The Annals of Applied Probability</i>, vol. 35, no. 3, Institute of Mathematical Statistics, 2025, pp. 1913–40, doi:<a href=\"https://doi.org/10.1214/25-aap2162\">10.1214/25-aap2162</a>.","ista":"Khudiakova K, Maas J, Pedrotti F. 2025. L∞-optimal transport of anisotropic log-concave measures and exponential convergence in Fisher’s infinitesimal model. The Annals of Applied Probability. 35(3), 1913–1940.","apa":"Khudiakova, K., Maas, J., &#38; Pedrotti, F. (2025). L∞-optimal transport of anisotropic log-concave measures and exponential convergence in Fisher’s infinitesimal model. <i>The Annals of Applied Probability</i>. Institute of Mathematical Statistics. <a href=\"https://doi.org/10.1214/25-aap2162\">https://doi.org/10.1214/25-aap2162</a>","short":"K. Khudiakova, J. Maas, F. Pedrotti, The Annals of Applied Probability 35 (2025) 1913–1940."},"intvolume":"        35","acknowledgement":"This research was funded in part by the Austrian Science Fund (FWF) project 10.55776/F65 and the Austrian Academy of Science, DOC fellowship nr. 26293.","type":"journal_article","day":"01","status":"public","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2402.04151"}],"arxiv":1,"doi":"10.1214/25-aap2162","date_created":"2025-07-21T08:13:54Z","corr_author":"1","scopus_import":"1","publication_identifier":{"issn":["1050-5164"]},"OA_type":"green","title":"L∞-optimal transport of anisotropic log-concave measures and exponential convergence in Fisher’s infinitesimal model","issue":"3"},{"publication_identifier":{"isbn":[" 9798400718854"]},"corr_author":"1","ddc":["000"],"title":"An almost tight lower bound for plurality consensus with undecided state dynamics in the population protocol model","OA_type":"hybrid","type":"conference","day":"13","acknowledgement":"This project has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (MoDynStruct, No. 101019564) and the Austrian Science Fund (FWF) grant DOI 10.55776/I5862,grant DOI 10.55776/I5982, and grant DOI 10.55776/P33775 with\r\nadditional funding from the netidee SCIENCE Stiftung, 2020–2024\r\nand the German Research Foundation (DFG), grant 470029389\r\n(FlexNets).","arxiv":1,"date_created":"2025-07-21T08:16:15Z","doi":"10.1145/3732772.3733505","has_accepted_license":"1","status":"public","citation":{"apa":"El-Hayek, A., Elsässer, R., &#38; Schmid, S. (2025). An almost tight lower bound for plurality consensus with undecided state dynamics in the population protocol model. In <i>Proceedings of the ACM Symposium on Principles of Distributed Computing</i>. Huatulco, Mexico: Association for Computing Machinery. <a href=\"https://doi.org/10.1145/3732772.3733505\">https://doi.org/10.1145/3732772.3733505</a>","ista":"El-Hayek A, Elsässer R, Schmid S. 2025. An almost tight lower bound for plurality consensus with undecided state dynamics in the population protocol model. Proceedings of the ACM Symposium on Principles of Distributed Computing. PODC: Symposium on Principles of Distributed Computing.","short":"A. El-Hayek, R. Elsässer, S. Schmid, in:, Proceedings of the ACM Symposium on Principles of Distributed Computing, Association for Computing Machinery, 2025.","ieee":"A. El-Hayek, R. Elsässer, and S. Schmid, “An almost tight lower bound for plurality consensus with undecided state dynamics in the population protocol model,” in <i>Proceedings of the ACM Symposium on Principles of Distributed Computing</i>, Huatulco, Mexico, 2025.","chicago":"El-Hayek, Antoine, Robert Elsässer, and Stefan Schmid. “An Almost Tight Lower Bound for Plurality Consensus with Undecided State Dynamics in the Population Protocol Model.” In <i>Proceedings of the ACM Symposium on Principles of Distributed Computing</i>. Association for Computing Machinery, 2025. <a href=\"https://doi.org/10.1145/3732772.3733505\">https://doi.org/10.1145/3732772.3733505</a>.","ama":"El-Hayek A, Elsässer R, Schmid S. An almost tight lower bound for plurality consensus with undecided state dynamics in the population protocol model. In: <i>Proceedings of the ACM Symposium on Principles of Distributed Computing</i>. Association for Computing Machinery; 2025. doi:<a href=\"https://doi.org/10.1145/3732772.3733505\">10.1145/3732772.3733505</a>","mla":"El-Hayek, Antoine, et al. “An Almost Tight Lower Bound for Plurality Consensus with Undecided State Dynamics in the Population Protocol Model.” <i>Proceedings of the ACM Symposium on Principles of Distributed Computing</i>, Association for Computing Machinery, 2025, doi:<a href=\"https://doi.org/10.1145/3732772.3733505\">10.1145/3732772.3733505</a>."},"date_published":"2025-06-13T00:00:00Z","conference":{"start_date":"2025-06-16","location":"Huatulco, Mexico","name":"PODC: Symposium on Principles of Distributed Computing","end_date":"2025-06-20"},"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"month":"06","OA_place":"publisher","publisher":"Association for Computing Machinery","language":[{"iso":"eng"}],"quality_controlled":"1","article_processing_charge":"Yes (via OA deal)","publication":"Proceedings of the ACM Symposium on Principles of Distributed Computing","file_date_updated":"2025-08-04T09:10:55Z","date_updated":"2025-10-16T13:08:45Z","publication_status":"published","year":"2025","isi":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file":[{"file_name":"2025_PODC_ElHayek.pdf","relation":"main_file","content_type":"application/pdf","file_id":"20115","date_updated":"2025-08-04T09:10:55Z","file_size":2200347,"access_level":"open_access","checksum":"52976d226f3f691aa519d71c1c718fa5","date_created":"2025-08-04T09:10:55Z","success":1,"creator":"dernst"}],"oa":1,"oa_version":"Published Version","project":[{"call_identifier":"H2020","grant_number":"101019564","_id":"bd9ca328-d553-11ed-ba76-dc4f890cfe62","name":"The design and evaluation of modern fully dynamic data structures"},{"name":"Static and Dynamic Hierarchical Graph Decompositions","_id":"bda196b2-d553-11ed-ba76-8e8ee6c21103","grant_number":"I05982"},{"_id":"bd9e3a2e-d553-11ed-ba76-8aa684ce17fe","grant_number":"P33775","name":"Fast Algorithms for a Reactive Network Layer"}],"_id":"20051","ec_funded":1,"department":[{"_id":"MoHe"}],"abstract":[{"lang":"eng","text":"We revisit the majority problem in the population protocol communication model, as first studied by Angluin et al. (Distributed Computing 2008). We consider a more general version of this problem known as plurality consensus, which has already been studied intensively in the literature. In this problem, each node in a system of n nodes, has initially one of k different opinions, and they need to agree on the (relative) majority opinion. In particular, we consider the important and intensively studied model of Undecided State Dynamics.\r\nOur main contribution is an almost tight lower bound on the stabilization time: we prove that there exists an initial configuration, even with bias \\Delta = \\omega(\\sqrt{n\\log n}), where stabilization requires \\Omega(kn\\log \\frac {\\sqrt n} {k \\log n}) interactions, or equivalently, \\Omega(k\\log \\frac {\\sqrt n} {k \\log n}) parallel time for any k = o\\left(\\frac {\\sqrt n}{\\log n}\\right). This bound is tight for any k \\le n^{\\frac 1 2 - \\epsilon}, where \\epsilon >0 can be any small constant, as Amir et al.~(PODC'23) gave a O(k\\log n) parallel time upper bound for k = O\\left(\\frac {\\sqrt n} {\\log ^2 n}\\right)."}],"external_id":{"arxiv":["2505.02765"],"isi":["001525534800066"]},"author":[{"id":"888a098e-fcac-11ee-aff7-d347be57b725","full_name":"El-Hayek, Antoine","orcid":"0000-0003-4268-7368","last_name":"El-Hayek","first_name":"Antoine"},{"full_name":"Elsässer, Robert","last_name":"Elsässer","first_name":"Robert"},{"last_name":"Schmid","first_name":"Stefan","full_name":"Schmid, Stefan"}]},{"OA_type":"hybrid","title":"Brief announcement: Minimizing energy solves relative majority with a cubic number of states in population protocols","ddc":["000"],"corr_author":"1","publication_identifier":{"isbn":["9798400718854"]},"status":"public","has_accepted_license":"1","doi":"10.1145/3732772.3733512","date_created":"2025-07-21T08:17:04Z","acknowledgement":"This project has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (MoDynStruct, No. 101019564) and the Austrian Science Fund (FWF) grant DOI 10.55776/I5982, and grant DOI 10.55776/P33775 with additional funding from the netidee SCIENCE Stiftung, 2020–2024 and the German Research Foundation (DFG), grant 470029389 (FlexNets). ","day":"13","type":"conference","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"conference":{"end_date":"2025-06-20","name":"PODC: Symposium on Principles of Distributed Computing","start_date":"2025-06-16","location":"Huatulco, Mexico"},"date_published":"2025-06-13T00:00:00Z","citation":{"short":"T.-L. Breitkopf, J. Dallot, A. El-Hayek, S. Schmid, in:, Proceedings of the ACM Symposium on Principles of Distributed Computing, Association for Computing Machinery, 2025, pp. 549–552.","apa":"Breitkopf, T.-L., Dallot, J., El-Hayek, A., &#38; Schmid, S. (2025). Brief announcement: Minimizing energy solves relative majority with a cubic number of states in population protocols. In <i>Proceedings of the ACM Symposium on Principles of Distributed Computing</i> (pp. 549–552). Huatulco, Mexico: Association for Computing Machinery. <a href=\"https://doi.org/10.1145/3732772.3733512\">https://doi.org/10.1145/3732772.3733512</a>","ista":"Breitkopf T-L, Dallot J, El-Hayek A, Schmid S. 2025. Brief announcement: Minimizing energy solves relative majority with a cubic number of states in population protocols. Proceedings of the ACM Symposium on Principles of Distributed Computing. PODC: Symposium on Principles of Distributed Computing, 549–552.","mla":"Breitkopf, Tom-Lukas, et al. “Brief Announcement: Minimizing Energy Solves Relative Majority with a Cubic Number of States in Population Protocols.” <i>Proceedings of the ACM Symposium on Principles of Distributed Computing</i>, Association for Computing Machinery, 2025, pp. 549–52, doi:<a href=\"https://doi.org/10.1145/3732772.3733512\">10.1145/3732772.3733512</a>.","chicago":"Breitkopf, Tom-Lukas, Julien Dallot, Antoine El-Hayek, and Stefan Schmid. “Brief Announcement: Minimizing Energy Solves Relative Majority with a Cubic Number of States in Population Protocols.” In <i>Proceedings of the ACM Symposium on Principles of Distributed Computing</i>, 549–52. Association for Computing Machinery, 2025. <a href=\"https://doi.org/10.1145/3732772.3733512\">https://doi.org/10.1145/3732772.3733512</a>.","ieee":"T.-L. Breitkopf, J. Dallot, A. El-Hayek, and S. Schmid, “Brief announcement: Minimizing energy solves relative majority with a cubic number of states in population protocols,” in <i>Proceedings of the ACM Symposium on Principles of Distributed Computing</i>, Huatulco, Mexico, 2025, pp. 549–552.","ama":"Breitkopf T-L, Dallot J, El-Hayek A, Schmid S. Brief announcement: Minimizing energy solves relative majority with a cubic number of states in population protocols. In: <i>Proceedings of the ACM Symposium on Principles of Distributed Computing</i>. Association for Computing Machinery; 2025:549-552. doi:<a href=\"https://doi.org/10.1145/3732772.3733512\">10.1145/3732772.3733512</a>"},"publication":"Proceedings of the ACM Symposium on Principles of Distributed Computing","article_processing_charge":"No","quality_controlled":"1","language":[{"iso":"eng"}],"publisher":"Association for Computing Machinery","OA_place":"publisher","month":"06","date_updated":"2026-02-16T11:46:37Z","file_date_updated":"2025-08-05T07:32:01Z","file":[{"file_name":"2025_PODC_Breitkopf.pdf","file_size":549706,"date_updated":"2025-08-05T07:32:01Z","file_id":"20123","content_type":"application/pdf","relation":"main_file","access_level":"open_access","creator":"dernst","success":1,"date_created":"2025-08-05T07:32:01Z","checksum":"e99679ffb28877b7cea4d54860302790"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","isi":1,"year":"2025","publication_status":"published","_id":"20052","project":[{"call_identifier":"H2020","_id":"bd9ca328-d553-11ed-ba76-dc4f890cfe62","grant_number":"101019564","name":"The design and evaluation of modern fully dynamic data structures"},{"name":"Static and Dynamic Hierarchical Graph Decompositions","_id":"bda196b2-d553-11ed-ba76-8e8ee6c21103","grant_number":"I05982"},{"grant_number":"P33775","_id":"bd9e3a2e-d553-11ed-ba76-8aa684ce17fe","name":"Fast Algorithms for a Reactive Network Layer"}],"ec_funded":1,"oa_version":"Published Version","page":"549-552","oa":1,"author":[{"last_name":"Breitkopf","first_name":"Tom-Lukas","full_name":"Breitkopf, Tom-Lukas"},{"last_name":"Dallot","first_name":"Julien","full_name":"Dallot, Julien"},{"first_name":"Antoine","last_name":"El-Hayek","full_name":"El-Hayek, Antoine","orcid":"0000-0003-4268-7368","id":"888a098e-fcac-11ee-aff7-d347be57b725"},{"last_name":"Schmid","first_name":"Stefan","full_name":"Schmid, Stefan"}],"external_id":{"isi":["001525534800069"]},"abstract":[{"text":"This paper revisits a fundamental distributed computing problem in the population protocol model. Provided n agents each starting with an input color in [k], the relative majority problem asks to find the predominant color. In the population protocol model, at each time step, a scheduler selects two agents that first learn each other's states and then update their states based on what they learned.\r\nWe present the Circles protocol that solves the relative majority problem with k3 states. It is always-correct under weakly fair scheduling. Not only does it improve upon the best known upper bound of O(k7), but it also shows a strikingly simpler design inspired by energy minimization in chemical settings.","lang":"eng"}],"department":[{"_id":"MoHe"}]},{"year":"2025","publication_status":"published","file":[{"date_created":"2025-08-05T07:15:31Z","checksum":"cd628fe54d96e9fc6cc789bb8145422b","creator":"dernst","success":1,"access_level":"open_access","content_type":"application/pdf","file_id":"20122","relation":"main_file","date_updated":"2025-08-05T07:15:31Z","file_size":783297,"file_name":"2025_PODC_Chatterjee.pdf"}],"isi":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file_date_updated":"2025-08-05T07:15:31Z","date_updated":"2026-02-16T11:46:51Z","department":[{"_id":"KrCh"},{"_id":"KrPi"}],"author":[{"last_name":"Chatterjee","first_name":"Krishnendu","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4561-241X","full_name":"Chatterjee, Krishnendu"},{"last_name":"Gilbert","first_name":"Seth","full_name":"Gilbert, Seth"},{"first_name":"Stefan","last_name":"Schmid","full_name":"Schmid, Stefan"},{"id":"130759D2-D7DD-11E9-87D2-DE0DE6697425","full_name":"Svoboda, Jakub","orcid":"0000-0002-1419-3267","last_name":"Svoboda","first_name":"Jakub"},{"orcid":"0009-0001-3676-4809","full_name":"Yeo, Michelle X","id":"2D82B818-F248-11E8-B48F-1D18A9856A87","first_name":"Michelle X","last_name":"Yeo"}],"external_id":{"isi":["001525534800030"]},"abstract":[{"lang":"eng","text":"Liquid democracy is a transitive vote delegation mechanism over voting graphs. It enables each voter to delegate their vote(s) to another better-informed voter, with the goal of collectively making a better decision. The question of whether liquid democracy outperforms direct voting has been previously studied in the context of local delegation mechanisms (where voters can only delegate to someone in their neighbourhood) and binary decision problems. It has previously been shown that it is impossible for local delegation mechanisms to outperform direct voting in general graphs. This raises the question: for which classes of graphs do local delegation mechanisms yield good results?\r\nIn this work, we analyse (1) properties of specific graphs and (2) properties of local delegation mechanisms on these graphs, determining where local delegation actually outperforms direct voting. We show that a critical graph property enabling liquid democracy is that the voting outcome of local delegation mechanisms preserves a sufficient amount of variance, thereby avoiding situations where delegation falls behind direct voting1. These insights allow us to prove our main results, namely that there exist local delegation mechanisms that perform no worse and in fact quantitatively better than direct voting in natural graph topologies like complete, random d-regular, and bounded degree graphs, lending a more nuanced perspective to previous impossibility results."}],"page":"241-251","oa":1,"_id":"20053","ec_funded":1,"project":[{"call_identifier":"H2020","grant_number":"863818","_id":"0599E47C-7A3F-11EA-A408-12923DDC885E","name":"Formal Methods for Stochastic Models: Algorithms and Applications"}],"oa_version":"Published Version","acknowledgement":"This work was partially supported by MOE-T2EP20122-0014 (DataDriven Distributed Algorithms), German Research Foundation (DFG) project ReNO (SPP 2378) from 2023-2027, ERC CoG 863818 (ForMSMArt) and Austrian Science Fund (FWF) 10.55776/COE12.","type":"conference","day":"13","status":"public","has_accepted_license":"1","doi":"10.1145/3732772.3733544","main_file_link":[{"open_access":"1","url":"https://eprint.iacr.org/2025/745"}],"date_created":"2025-07-21T08:18:26Z","ddc":["000"],"corr_author":"1","publication_identifier":{"isbn":["9798400718854"]},"OA_type":"hybrid","title":"When is liquid democracy possible?: On the manipulation of variance","language":[{"iso":"eng"}],"OA_place":"publisher","publisher":"Association for Computing Machinery","month":"06","publication":"Proceedings of the ACM Symposium on Principles of Distributed Computing","article_processing_charge":"No","quality_controlled":"1","conference":{"start_date":"2025-06-16","location":"Huatulco, Mexico","end_date":"2025-06-20","name":"PODC: Symposium on Principles of Distributed Computing"},"date_published":"2025-06-13T00:00:00Z","citation":{"mla":"Chatterjee, Krishnendu, et al. “When Is Liquid Democracy Possible?: On the Manipulation of Variance.” <i>Proceedings of the ACM Symposium on Principles of Distributed Computing</i>, Association for Computing Machinery, 2025, pp. 241–51, doi:<a href=\"https://doi.org/10.1145/3732772.3733544\">10.1145/3732772.3733544</a>.","ama":"Chatterjee K, Gilbert S, Schmid S, Svoboda J, Yeo MX. When is liquid democracy possible?: On the manipulation of variance. In: <i>Proceedings of the ACM Symposium on Principles of Distributed Computing</i>. Association for Computing Machinery; 2025:241-251. doi:<a href=\"https://doi.org/10.1145/3732772.3733544\">10.1145/3732772.3733544</a>","ieee":"K. Chatterjee, S. Gilbert, S. Schmid, J. Svoboda, and M. X. Yeo, “When is liquid democracy possible?: On the manipulation of variance,” in <i>Proceedings of the ACM Symposium on Principles of Distributed Computing</i>, Huatulco, Mexico, 2025, pp. 241–251.","chicago":"Chatterjee, Krishnendu, Seth Gilbert, Stefan Schmid, Jakub Svoboda, and Michelle X Yeo. “When Is Liquid Democracy Possible?: On the Manipulation of Variance.” In <i>Proceedings of the ACM Symposium on Principles of Distributed Computing</i>, 241–51. Association for Computing Machinery, 2025. <a href=\"https://doi.org/10.1145/3732772.3733544\">https://doi.org/10.1145/3732772.3733544</a>.","short":"K. Chatterjee, S. Gilbert, S. Schmid, J. Svoboda, M.X. Yeo, in:, Proceedings of the ACM Symposium on Principles of Distributed Computing, Association for Computing Machinery, 2025, pp. 241–251.","ista":"Chatterjee K, Gilbert S, Schmid S, Svoboda J, Yeo MX. 2025. When is liquid democracy possible?: On the manipulation of variance. Proceedings of the ACM Symposium on Principles of Distributed Computing. PODC: Symposium on Principles of Distributed Computing, 241–251.","apa":"Chatterjee, K., Gilbert, S., Schmid, S., Svoboda, J., &#38; Yeo, M. X. (2025). When is liquid democracy possible?: On the manipulation of variance. In <i>Proceedings of the ACM Symposium on Principles of Distributed Computing</i> (pp. 241–251). Huatulco, Mexico: Association for Computing Machinery. <a href=\"https://doi.org/10.1145/3732772.3733544\">https://doi.org/10.1145/3732772.3733544</a>"},"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"}},{"oa_version":"None","article_number":"220","_id":"20054","citation":{"short":"S. Horta, in:, Proceedings of the MATSUS Spring 2025 Conference, Fundació de la comunitat valenciana SCITO, 2025.","ista":"Horta S. 2025. Solid state diffusion in metal-semiconductors core-shell nanoparticle. Proceedings of the MATSUS Spring 2025 Conference. MATSUS: Materials for Sustainable Development Conference, 220.","apa":"Horta, S. (2025). Solid state diffusion in metal-semiconductors core-shell nanoparticle. In <i>Proceedings of the MATSUS Spring 2025 Conference</i>. Sevilla, Spain: Fundació de la comunitat valenciana SCITO. <a href=\"https://doi.org/10.29363/nanoge.matsusspring.2025.220\">https://doi.org/10.29363/nanoge.matsusspring.2025.220</a>","mla":"Horta, Sharona. “Solid State Diffusion in Metal-Semiconductors Core-Shell Nanoparticle.” <i>Proceedings of the MATSUS Spring 2025 Conference</i>, 220, Fundació de la comunitat valenciana SCITO, 2025, doi:<a href=\"https://doi.org/10.29363/nanoge.matsusspring.2025.220\">10.29363/nanoge.matsusspring.2025.220</a>.","ieee":"S. Horta, “Solid state diffusion in metal-semiconductors core-shell nanoparticle,” in <i>Proceedings of the MATSUS Spring 2025 Conference</i>, Sevilla, Spain, 2025.","chicago":"Horta, Sharona. “Solid State Diffusion in Metal-Semiconductors Core-Shell Nanoparticle.” In <i>Proceedings of the MATSUS Spring 2025 Conference</i>. Fundació de la comunitat valenciana SCITO, 2025. <a href=\"https://doi.org/10.29363/nanoge.matsusspring.2025.220\">https://doi.org/10.29363/nanoge.matsusspring.2025.220</a>.","ama":"Horta S. Solid state diffusion in metal-semiconductors core-shell nanoparticle. In: <i>Proceedings of the MATSUS Spring 2025 Conference</i>. Fundació de la comunitat valenciana SCITO; 2025. doi:<a href=\"https://doi.org/10.29363/nanoge.matsusspring.2025.220\">10.29363/nanoge.matsusspring.2025.220</a>"},"date_published":"2025-03-03T00:00:00Z","conference":{"location":"Sevilla, Spain","start_date":"2025-03-03","name":"MATSUS: Materials for Sustainable Development Conference","end_date":"2025-03-07"},"quality_controlled":"1","article_processing_charge":"No","publication":"Proceedings of the MATSUS Spring 2025 Conference","author":[{"full_name":"Horta, Sharona","id":"03a7e858-01b1-11ec-8b71-99ae6c4a05bc","first_name":"Sharona","last_name":"Horta"}],"month":"03","department":[{"_id":"MaIb"}],"publisher":"Fundació de la comunitat valenciana SCITO","language":[{"iso":"eng"}],"title":"Solid state diffusion in metal-semiconductors core-shell nanoparticle","date_updated":"2025-09-23T09:04:03Z","corr_author":"1","date_created":"2025-07-21T08:22:29Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.29363/nanoge.matsusspring.2025.220","status":"public","publication_status":"published","type":"conference_abstract","day":"03","year":"2025"},{"acknowledged_ssus":[{"_id":"EM-Fac"},{"_id":"NMR"},{"_id":"LifeSc"}],"quality_controlled":"1","article_processing_charge":"No","abstract":[{"text":"Supercrystals represent three-dimensional orderings of colloidal nanocrystals (NCs), showcasing collective properties in photonics, phononics, and electronics applications.1,2 Recent studies have shown that such assemblies are directly produced during nanocrystal reactions.3–6 However, a fundamental understanding of in situ formed supercrystals that withstand typical NC purification processes remains underexplored, which is important for further use. Herein, we report the reaction precursor-mediated formation of stable PbTe supercrystals. Rationalizing the formation of these assemblies through small-angle x-ray scattering (SAXS) measurements, we unveil their formation mechanism. Our findings reveal that the supercrystal formation occurs in the presence of an excess of lead oleates in the crude solution. It should be noted that the formed supercrystals can be stabilized under specific conditions determined by the lead oleate cluster concentration, content of trioctylphosphine telluride (TOP-Te), NC size and the need of an annealing step at mild conditions. Furthermore, this approach allows for the continuous growth of a secondary phase within the supercrystal; for example in the case of PbTe supercrystals, a PbS shell can be grown on each PbTe NC constituent, resulting in core-shell PbTe-PbS supercrystals. Our work elucidates that reaction precursors play an important role in in situ SC formation and stabilization, implying the possibility of applying this knowledge to other NC reactions.","lang":"eng"}],"publication":"Proceedings of the MATSUS Spring 2025 Conference","author":[{"full_name":"Lee, Seungho","orcid":"0000-0002-6962-8598","id":"BB243B88-D767-11E9-B658-BC13E6697425","first_name":"Seungho","last_name":"Lee"},{"first_name":"Daniel","last_name":"Balazs","orcid":"0000-0001-7597-043X","full_name":"Balazs, Daniel","id":"302BADF6-85FC-11EA-9E3B-B9493DDC885E"},{"id":"03a7e858-01b1-11ec-8b71-99ae6c4a05bc","full_name":"Horta, Sharona","last_name":"Horta","first_name":"Sharona"},{"first_name":"Aiswarya","last_name":"Rayaroth Puthiyaveettil","full_name":"Rayaroth Puthiyaveettil, Aiswarya","id":"8aceb01b-8972-11ed-ae7b-d5fe53775add"},{"full_name":"Ibáñez, Maria","orcid":"0000-0001-5013-2843","id":"43C61214-F248-11E8-B48F-1D18A9856A87","first_name":"Maria","last_name":"Ibáñez"}],"department":[{"_id":"MaIb"},{"_id":"LifeSc"}],"month":"03","publisher":"Fundació de la comunitat valenciana SCITO","language":[{"iso":"eng"}],"oa_version":"None","article_number":"173","_id":"20055","project":[{"_id":"9B8F7476-BA93-11EA-9121-9846C619BF3A","name":"HighTE: The Werner Siemens Laboratory for the High Throughput Discovery of Semiconductors for Waste Heat Recovery"}],"citation":{"mla":"Lee, Seungho, et al. “Reaction Precursor-Mediated Formation of Stable Supercrystals in Colloidal Nanocrystal Synthesis: PbTe Case.” <i>Proceedings of the MATSUS Spring 2025 Conference</i>, 173, Fundació de la comunitat valenciana SCITO, 2025, doi:<a href=\"https://doi.org/10.29363/nanoge.matsusspring.2025.173\">10.29363/nanoge.matsusspring.2025.173</a>.","ama":"Lee S, Balazs D, Horta S, Rayaroth Puthiyaveettil A, Ibáñez M. Reaction precursor-mediated formation of stable supercrystals in colloidal nanocrystal synthesis: PbTe case. In: <i>Proceedings of the MATSUS Spring 2025 Conference</i>. Fundació de la comunitat valenciana SCITO; 2025. doi:<a href=\"https://doi.org/10.29363/nanoge.matsusspring.2025.173\">10.29363/nanoge.matsusspring.2025.173</a>","chicago":"Lee, Seungho, Daniel Balazs, Sharona Horta, Aiswarya Rayaroth Puthiyaveettil, and Maria Ibáñez. “Reaction Precursor-Mediated Formation of Stable Supercrystals in Colloidal Nanocrystal Synthesis: PbTe Case.” In <i>Proceedings of the MATSUS Spring 2025 Conference</i>. Fundació de la comunitat valenciana SCITO, 2025. <a href=\"https://doi.org/10.29363/nanoge.matsusspring.2025.173\">https://doi.org/10.29363/nanoge.matsusspring.2025.173</a>.","ieee":"S. Lee, D. Balazs, S. Horta, A. Rayaroth Puthiyaveettil, and M. Ibáñez, “Reaction precursor-mediated formation of stable supercrystals in colloidal nanocrystal synthesis: PbTe case,” in <i>Proceedings of the MATSUS Spring 2025 Conference</i>, Sevilla, Spain, 2025.","short":"S. Lee, D. Balazs, S. Horta, A. Rayaroth Puthiyaveettil, M. Ibáñez, in:, Proceedings of the MATSUS Spring 2025 Conference, Fundació de la comunitat valenciana SCITO, 2025.","apa":"Lee, S., Balazs, D., Horta, S., Rayaroth Puthiyaveettil, A., &#38; Ibáñez, M. (2025). Reaction precursor-mediated formation of stable supercrystals in colloidal nanocrystal synthesis: PbTe case. In <i>Proceedings of the MATSUS Spring 2025 Conference</i>. Sevilla, Spain: Fundació de la comunitat valenciana SCITO. <a href=\"https://doi.org/10.29363/nanoge.matsusspring.2025.173\">https://doi.org/10.29363/nanoge.matsusspring.2025.173</a>","ista":"Lee S, Balazs D, Horta S, Rayaroth Puthiyaveettil A, Ibáñez M. 2025. Reaction precursor-mediated formation of stable supercrystals in colloidal nanocrystal synthesis: PbTe case. Proceedings of the MATSUS Spring 2025 Conference. MATSUS: Materials for Sustainable Development Conference, 173."},"date_published":"2025-03-15T00:00:00Z","conference":{"start_date":"2025-03-03","location":"Sevilla, Spain","end_date":"2025-03-07","name":"MATSUS: Materials for Sustainable Development Conference"},"date_created":"2025-07-21T08:33:20Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.29363/nanoge.matsusspring.2025.173","status":"public","publication_status":"published","type":"conference","day":"15","acknowledgement":"ISTA and the Werner Siemens Foundation financially supported this work. The Scientific Service Units (SSU) of ISTA supported this research through resources provided by the Electron Microscopy Facility (EMF), NMR Facility and the Lab Support Facility (LSF).","year":"2025","title":"Reaction precursor-mediated formation of stable supercrystals in colloidal nanocrystal synthesis: PbTe case","OA_type":"closed access","date_updated":"2026-02-19T09:25:57Z","corr_author":"1"},{"date_published":"2025-04-01T00:00:00Z","citation":{"chicago":"Nabeel, Arshed, Ashwin Karichannavar, Shuaib Palathingal, Jitesh Jhawar, David Brückner, Danny Raj M, and Vishwesha Guttal. “Discovering Stochastic Dynamical Equations from Ecological Time Series Data.” <i>The American Naturalist</i>. University of Chicago Press, 2025. <a href=\"https://doi.org/10.1086/734083\">https://doi.org/10.1086/734083</a>.","ieee":"A. Nabeel <i>et al.</i>, “Discovering stochastic dynamical equations from ecological time series data,” <i>The American Naturalist</i>, vol. 205, no. 4. University of Chicago Press, pp. E100–E117, 2025.","ama":"Nabeel A, Karichannavar A, Palathingal S, et al. Discovering stochastic dynamical equations from ecological time series data. <i>The American Naturalist</i>. 2025;205(4):E100-E117. doi:<a href=\"https://doi.org/10.1086/734083\">10.1086/734083</a>","mla":"Nabeel, Arshed, et al. “Discovering Stochastic Dynamical Equations from Ecological Time Series Data.” <i>The American Naturalist</i>, vol. 205, no. 4, University of Chicago Press, 2025, pp. E100–17, doi:<a href=\"https://doi.org/10.1086/734083\">10.1086/734083</a>.","apa":"Nabeel, A., Karichannavar, A., Palathingal, S., Jhawar, J., Brückner, D., Raj M, D., &#38; Guttal, V. (2025). Discovering stochastic dynamical equations from ecological time series data. <i>The American Naturalist</i>. University of Chicago Press. <a href=\"https://doi.org/10.1086/734083\">https://doi.org/10.1086/734083</a>","ista":"Nabeel A, Karichannavar A, Palathingal S, Jhawar J, Brückner D, Raj M D, Guttal V. 2025. Discovering stochastic dynamical equations from ecological time series data. The American Naturalist. 205(4), E100–E117.","short":"A. Nabeel, A. Karichannavar, S. Palathingal, J. Jhawar, D. Brückner, D. Raj M, V. Guttal, The American Naturalist 205 (2025) E100–E117."},"intvolume":"       205","month":"04","pmid":1,"language":[{"iso":"eng"}],"OA_place":"repository","publisher":"University of Chicago Press","article_processing_charge":"No","quality_controlled":"1","publication":"The American Naturalist","publication_identifier":{"eissn":["1537-5323"],"issn":["0003-0147"]},"OA_type":"green","title":"Discovering stochastic dynamical equations from ecological time series data","issue":"4","day":"01","type":"journal_article","acknowledgement":"V.G. acknowledges support from the Science and Engi-neering Research Board, Department of Biotechnology,and the Indo-French Centre for the Promotion of Ad-vanced Research (64T4-1). D.R.M. acknowledges supportfrom a Department of Science and Technology (DST) In-novation in Science Pursuit for Inspired Research (IN-SPIRE) Faculty Award. J.J. acknowledges support froma Humboldt postdoctoral fellowship and the Heidelber-ger Akademie der Wissenschaften, Heidelberg, Germany.D.B.B. acknowledges support from the NOMIS Founda-tion and an European Molecular Biology Organization(EMBO) postdoctoral fellowship (ALTF 343-2022). A.N.and S.P. acknowledge support from Ministry of Educa-tion (MoE) PhD fellowships. We thank Ashrit Mangal-wedhekar, Vivek Jadhav, Shikhara Bhat, Cassandre Aimon,and Harishankar Muppirala for comments on the manu-script and code. We thank Kollegala Sharma for his inputon the Kannada translation of the title and abstract.Data-Driven Model Discovery E115","main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2205.02645","open_access":"1"}],"doi":"10.1086/734083","arxiv":1,"date_created":"2025-07-21T08:37:27Z","status":"public","oa":1,"page":"E100-E117","article_type":"original","oa_version":"Preprint","_id":"20056","project":[{"grant_number":"ALTF 343-2022","_id":"34e2a5b5-11ca-11ed-8bc3-b2265616ef0b","name":"A mechano-chemical theory for stem cell fate decisions in organoid development"}],"department":[{"_id":"EdHa"}],"abstract":[{"text":"Theoretical studies have shown that stochasticity can affect the dynamics of ecosystems in counterintuitive ways. However, without knowing the equations governing the dynamics of populations or ecosystems, it is difficult to ascertain the role of stochasticity in real datasets. Therefore, the inverse problem of inferring the governing stochastic equations from datasets is important. Here, we present an equation discovery methodology that takes time series data of state variables as input and outputs a stochastic differential equation. We achieve this by combining traditional approaches from stochastic calculus with the equation discovery techniques. We demonstrate the generality of the method via several applications. First, we deliberately choose various stochastic models with fundamentally different governing equations, yet they produce nearly identical steady-state distributions. We show that we can recover the correct underlying equations, and thus infer the structure of their stability, accurately from the analysis of time series data alone. We demonstrate our method on two real-world datasets—fish schooling and single-cell migration—that have vastly different spatiotemporal scales and dynamics. We illustrate various limitations and potential pitfalls of the method and how to overcome them via diagnostic measures. Finally, we provide our open-source code via a package named PyDaDDy (Python Library for Data-Driven Dynamics).","lang":"eng"}],"author":[{"first_name":"Arshed","last_name":"Nabeel","full_name":"Nabeel, Arshed"},{"first_name":"Ashwin","last_name":"Karichannavar","full_name":"Karichannavar, Ashwin"},{"last_name":"Palathingal","first_name":"Shuaib","full_name":"Palathingal, Shuaib"},{"full_name":"Jhawar, Jitesh","first_name":"Jitesh","last_name":"Jhawar"},{"first_name":"David","last_name":"Brückner","full_name":"Brückner, David","orcid":"0000-0001-7205-2975","id":"e1e86031-6537-11eb-953a-f7ab92be508d"},{"first_name":"Danny","last_name":"Raj M","full_name":"Raj M, Danny"},{"full_name":"Guttal, Vishwesha","last_name":"Guttal","first_name":"Vishwesha"}],"external_id":{"isi":["001433250500001"],"arxiv":["2205.02645"],"pmid":["40179429"]},"date_updated":"2025-09-30T14:14:43Z","publication_status":"published","volume":205,"year":"2025","isi":1,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","related_material":{"record":[{"relation":"software","status":"public","id":"20121"}]}},{"publication_identifier":{"issn":["2663-337X"],"isbn":["978-3-99078-060-2"]},"ddc":["570"],"corr_author":"1","title":" Human microglia impact neuronal development in retinal organoids","day":"24","type":"dissertation","has_accepted_license":"1","status":"public","doi":"10.15479/AT-ISTA-20074","date_created":"2025-07-24T12:37:22Z","citation":{"mla":"Schmied, Verena. <i> Human Microglia Impact Neuronal Development in Retinal Organoids</i>. Institute of Science and Technology Austria, 2025, doi:<a href=\"https://doi.org/10.15479/AT-ISTA-20074\">10.15479/AT-ISTA-20074</a>.","ama":"Schmied V.  Human microglia impact neuronal development in retinal organoids. 2025. doi:<a href=\"https://doi.org/10.15479/AT-ISTA-20074\">10.15479/AT-ISTA-20074</a>","chicago":"Schmied, Verena. “ Human Microglia Impact Neuronal Development in Retinal Organoids.” Institute of Science and Technology Austria, 2025. <a href=\"https://doi.org/10.15479/AT-ISTA-20074\">https://doi.org/10.15479/AT-ISTA-20074</a>.","ieee":"V. Schmied, “ Human microglia impact neuronal development in retinal organoids,” Institute of Science and Technology Austria, 2025.","short":"V. Schmied,  Human Microglia Impact Neuronal Development in Retinal Organoids, Institute of Science and Technology Austria, 2025.","ista":"Schmied V. 2025.  Human microglia impact neuronal development in retinal organoids. Institute of Science and Technology Austria.","apa":"Schmied, V. (2025). <i> Human microglia impact neuronal development in retinal organoids</i>. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT-ISTA-20074\">https://doi.org/10.15479/AT-ISTA-20074</a>"},"date_published":"2025-07-24T00:00:00Z","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"publisher":"Institute of Science and Technology Austria","OA_place":"publisher","language":[{"iso":"eng"}],"month":"07","article_processing_charge":"No","alternative_title":["ISTA Thesis"],"degree_awarded":"PhD","supervisor":[{"first_name":"Sandra","last_name":"Siegert","full_name":"Siegert, Sandra","orcid":"0000-0001-8635-0877","id":"36ACD32E-F248-11E8-B48F-1D18A9856A87"}],"file_date_updated":"2025-07-30T09:29:09Z","date_updated":"2026-05-06T12:49:36Z","year":"2025","publication_status":"published","related_material":{"record":[{"id":"11478","relation":"part_of_dissertation","status":"public"},{"relation":"part_of_dissertation","status":"public","id":"19593"}]},"file":[{"date_created":"2025-07-30T08:47:53Z","checksum":"d09f9984002353ad7442358394919bf3","creator":"vhuebsch","access_level":"closed","file_id":"20086","content_type":"application/x-zip-compressed","relation":"source_file","date_updated":"2025-07-30T08:47:53Z","file_size":43566093,"file_name":"PhD_Thesis_Schmied.zip"},{"creator":"vhuebsch","date_created":"2025-07-30T08:47:46Z","checksum":"4833690d7283c587f518ba98eeb2c946","access_level":"open_access","date_updated":"2025-07-30T09:29:09Z","file_size":13120922,"content_type":"application/pdf","file_id":"20087","relation":"main_file","file_name":"PhD_Thesis_Schmied.pdf"}],"user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","page":"151","oa":1,"_id":"20074","project":[{"name":"How human microglia shape developing neurons during health and inflammation","_id":"9B99D380-BA93-11EA-9121-9846C619BF3A","grant_number":"SC19-017"}],"oa_version":"Published Version","department":[{"_id":"GradSch"},{"_id":"SaSi"}],"author":[{"id":"32B7C918-F248-11E8-B48F-1D18A9856A87","full_name":"Hübschmann, Verena","last_name":"Hübschmann","first_name":"Verena"}],"abstract":[{"text":"Prenatal immune challenges pose significant risks to human embryonic brain and eye development. However, we still lack knowledge about the safe usage of anti-inflammatory drugs during pregnancy. Human induced pluripotent stem cell (hIPSC)-derived brain organoid models provide a unique opportunity to investigate neuronal development and have started to explore functional consequences upon viral infection. However, brain organoids usually lack microglia, the brain-resident immune cells. They are present in the early human embryonic brain and actively participate in neuronal circuit development. At the same time, microglia are known for their immune-sensing properties and will influence viral-mediated effects. In my thesis, I was interested to study the multifunctional role of human microglia during retinal development. \r\nIn chapter 1, I characterize the innate occurrence of IBA1+-microglia-like cells within the retinal organoid differentiation (Bartalska et al., 2022). Therefore, we differentiate hIPSC using an unguided retinal organoid differentiation protocol and observe the presence of IBA1+-microglia-like cells alongside retinal cups between week 3 and 4 in 2.5D culture. However, instead of infiltrating the neuroectodermal sides, they enrich within non-pigmented, 3D-cystic compartments that develop in low numbers parallel to 3D-retinal organoids. To enrich for IBA1+-microglia precursors (preMG), we guided the differentiation with a low-dosed BMP4 application, which prevents retinal cup development and enhances microglia and 3D-cysts formation. We characterize the differentiated preMG for their microglia-like identity and validated their functionality. In parallel, mass spectrometry identifies the 3D-cysts to express mesenchymal and epithelial markers. We confirm that comparable 3D-cysts are also the preferential environment for IBA1+-microglia-like cells within the unguided retinal organoid differentiation. \r\nIn chapter 2, I investigate how microglia influence retinal development and whether they contribute to viral-mediated consequences (Schmied et al., 2025). Here, we assemble preMG, which we have characterized in chapter 1, into 3D-retinal organoids. Once the outer plexiform layer forms, microglia-like cells (iMG) populate them and interact with retinal cell types. However, at this developmental stage, the ganglion cell number decreases in 3D-retinal organoids. Thus, we adapted the model into 2D which promotes their survival. Integrated iMG engulf ganglion cells and control their cell number. In parallel, we apply the immunostimulant POLY(I:C) to mimic a fetal viral infection. Although POLY(I:C) stimulation affects iMG phenotype, it does not influence their interaction with ganglion cells. Furthermore, iMG presence significantly contributes to the supernatant’s inflammatory secretome and increases retinal cell proliferation. Simultaneous exposure to the non-steroidal anti-inflammatory drug (NSAID) ibuprofen dampens POLY(I:C)-mediated consequences of the iMG phenotype and ameliorates cell proliferation. Remarkably, while POLY(I:C) disrupts neuronal calcium dynamics independent of iMG presence, ibuprofen rescues this effect only in the presence of iMG. Mechanistically, ibuprofen blocks the enzymes cyclooxygenase 1 and 2 (COX1/ PTGS1 and COX2/ PTGS2) simultaneously, from which iMG predominantly express COX1. Selective inhibition of COX1 does not restore the calcium peak amplitude upon POLY(I:C) stimulation, indicating ibuprofen’s effect depends on the presence and interplay of both, COX1 and COX2. \r\nIn summary, we characterized the 3D-retinal organoid model for the occurrence of IBA1+-microglia like cells. As the innately developing IBA1+-cells enrich in mesenchymal over retinal structures, we optimized a protocol to differentiate IBA1+-microglia precursors. By combining these two models we generate microglia-assembled retinal organoids. Our results underscore the importance of microglia during neurodevelopment, in the context of prenatal immune challenges and provide insight into the mechanisms by which ibuprofen exerts its protective effects during embryonic development.","lang":"eng"}]},{"publisher":"MDPI","OA_place":"publisher","language":[{"iso":"eng"}],"month":"07","publication":"Biology","quality_controlled":"1","article_processing_charge":"Yes","citation":{"ama":"Rosani U, Altan N, Venier P, Bortoletto E, Volpi N, Bernecky C. Ancestral origin and functional expression of a hyaluronic acid pathway complement in mussels. <i>Biology</i>. 2025;14(8). doi:<a href=\"https://doi.org/10.3390/biology14080930\">10.3390/biology14080930</a>","chicago":"Rosani, Umberto, Nehir Altan, Paola Venier, Enrico Bortoletto, Nicola Volpi, and Carrie Bernecky. “Ancestral Origin and Functional Expression of a Hyaluronic Acid Pathway Complement in Mussels.” <i>Biology</i>. MDPI, 2025. <a href=\"https://doi.org/10.3390/biology14080930\">https://doi.org/10.3390/biology14080930</a>.","ieee":"U. Rosani, N. Altan, P. Venier, E. Bortoletto, N. Volpi, and C. Bernecky, “Ancestral origin and functional expression of a hyaluronic acid pathway complement in mussels,” <i>Biology</i>, vol. 14, no. 8. MDPI, 2025.","mla":"Rosani, Umberto, et al. “Ancestral Origin and Functional Expression of a Hyaluronic Acid Pathway Complement in Mussels.” <i>Biology</i>, vol. 14, no. 8, 930, MDPI, 2025, doi:<a href=\"https://doi.org/10.3390/biology14080930\">10.3390/biology14080930</a>.","ista":"Rosani U, Altan N, Venier P, Bortoletto E, Volpi N, Bernecky C. 2025. Ancestral origin and functional expression of a hyaluronic acid pathway complement in mussels. Biology. 14(8), 930.","apa":"Rosani, U., Altan, N., Venier, P., Bortoletto, E., Volpi, N., &#38; Bernecky, C. (2025). Ancestral origin and functional expression of a hyaluronic acid pathway complement in mussels. <i>Biology</i>. MDPI. <a href=\"https://doi.org/10.3390/biology14080930\">https://doi.org/10.3390/biology14080930</a>","short":"U. Rosani, N. Altan, P. Venier, E. Bortoletto, N. Volpi, C. Bernecky, Biology 14 (2025)."},"date_published":"2025-07-24T00:00:00Z","article_number":"930","intvolume":"        14","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"acknowledgement":"This research was funded by the Italian Ministry of University and Research (MIUR), grant ID: P2022JEEMT (Developing a tool for the study of haplotype diversity in Mytilus galloprovincialis (HAMIGA)).","DOAJ_listed":"1","type":"journal_article","day":"24","has_accepted_license":"1","status":"public","date_created":"2025-07-25T08:28:26Z","doi":"10.3390/biology14080930","publication_identifier":{"issn":["2079-7737"]},"ddc":["570"],"issue":"8","title":"Ancestral origin and functional expression of a hyaluronic acid pathway complement in mussels","OA_type":"gold","PlanS_conform":"1","department":[{"_id":"CaBe"}],"external_id":{"isi":["001557922100001"]},"author":[{"first_name":"Umberto","last_name":"Rosani","full_name":"Rosani, Umberto"},{"full_name":"Altan, Nehir","last_name":"Altan","first_name":"Nehir"},{"last_name":"Venier","first_name":"Paola","full_name":"Venier, Paola"},{"full_name":"Bortoletto, Enrico","first_name":"Enrico","last_name":"Bortoletto"},{"full_name":"Volpi, Nicola","first_name":"Nicola","last_name":"Volpi"},{"last_name":"Bernecky","first_name":"Carrie A","id":"2CB9DFE2-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-0893-7036","full_name":"Bernecky, Carrie A"}],"abstract":[{"lang":"eng","text":"Hyaluronic acid (HA) is a key extracellular matrix component of vertebrates, where it mediates cell adhesion, immune regulation, and tissue remodeling through its interaction with specific receptors. Although HA has been detected in a few invertebrate species, the lack of fundamental components of the molecular HA pathway poses relevant objections about its functional role in these species. Mining genomic and transcriptomic data, we considered the conservation of the gene locus encoding for the extracellular link protein (XLINK) in marine mussels as well as its expression patterns. Structural and phylogenetic analyses were undertaken to evaluate possible similarities with vertebrate orthologs and to infer the origin of this gene in invertebrates. Biochemical analysis was used to quantify HA in tissues of Mytilus galloprovincialis. As a result, we confirm that the mussel can produce HA (up to 1.02 ng/mg in mantle) and that its genome encodes two XLINK gene loci. These loci are conserved in Mytilidae species and show a complex evolutionary path. Mussel XLINK genes appeared to be expressed during developmental stages in three mussel species, ranking in the top 100 expressed genes in M. trossulus at 17 h post-fertilization. In conclusion, the presence of HA and an active gene with the potential to bind HA suggests that mussels have the potential to synthesize and use HA and are among the few invertebrates encoding this gene."}],"article_type":"original","oa":1,"_id":"20077","oa_version":"Published Version","year":"2025","volume":14,"publication_status":"published","file":[{"file_id":"20097","content_type":"application/pdf","relation":"main_file","date_updated":"2025-07-31T09:11:09Z","file_size":1885781,"file_name":"2025_Biology_Rosani.pdf","date_created":"2025-07-31T09:11:09Z","checksum":"f5e059e66803fa54249c1db029aef0f6","creator":"dernst","success":1,"access_level":"open_access"}],"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","isi":1,"file_date_updated":"2025-07-31T09:11:09Z","date_updated":"2025-09-30T14:10:07Z"},{"publication_identifier":{"issn":["0022-314X"]},"scopus_import":"1","ddc":["500"],"corr_author":"1","title":"Divisibility sequences related to abelian varieties isogenous to a power of an elliptic curve","OA_type":"hybrid","type":"journal_article","day":"23","status":"public","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1016/j.jnt.2025.06.001"}],"arxiv":1,"doi":"10.1016/j.jnt.2025.06.001","date_created":"2025-07-27T22:01:25Z","citation":{"short":"S. Barańczuk, B. Naskręcki, M. Verzobio, Journal of Number Theory 279 (2025) 170–183.","apa":"Barańczuk, S., Naskręcki, B., &#38; Verzobio, M. (2025). Divisibility sequences related to abelian varieties isogenous to a power of an elliptic curve. <i>Journal of Number Theory</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.jnt.2025.06.001\">https://doi.org/10.1016/j.jnt.2025.06.001</a>","ista":"Barańczuk S, Naskręcki B, Verzobio M. 2025. Divisibility sequences related to abelian varieties isogenous to a power of an elliptic curve. Journal of Number Theory. 279, 170–183.","mla":"Barańczuk, Stefan, et al. “Divisibility Sequences Related to Abelian Varieties Isogenous to a Power of an Elliptic Curve.” <i>Journal of Number Theory</i>, vol. 279, Elsevier, 2025, pp. 170–83, doi:<a href=\"https://doi.org/10.1016/j.jnt.2025.06.001\">10.1016/j.jnt.2025.06.001</a>.","chicago":"Barańczuk, Stefan, Bartosz Naskręcki, and Matteo Verzobio. “Divisibility Sequences Related to Abelian Varieties Isogenous to a Power of an Elliptic Curve.” <i>Journal of Number Theory</i>. Elsevier, 2025. <a href=\"https://doi.org/10.1016/j.jnt.2025.06.001\">https://doi.org/10.1016/j.jnt.2025.06.001</a>.","ieee":"S. Barańczuk, B. Naskręcki, and M. Verzobio, “Divisibility sequences related to abelian varieties isogenous to a power of an elliptic curve,” <i>Journal of Number Theory</i>, vol. 279. Elsevier, pp. 170–183, 2025.","ama":"Barańczuk S, Naskręcki B, Verzobio M. Divisibility sequences related to abelian varieties isogenous to a power of an elliptic curve. <i>Journal of Number Theory</i>. 2025;279:170-183. doi:<a href=\"https://doi.org/10.1016/j.jnt.2025.06.001\">10.1016/j.jnt.2025.06.001</a>"},"date_published":"2025-07-23T00:00:00Z","intvolume":"       279","publisher":"Elsevier","OA_place":"publisher","language":[{"iso":"eng"}],"month":"07","publication":"Journal of Number Theory","quality_controlled":"1","article_processing_charge":"Yes (via OA deal)","date_updated":"2026-06-18T18:19:48Z","year":"2025","volume":279,"publication_status":"epub_ahead","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","isi":1,"page":"170-183","article_type":"original","oa":1,"_id":"20078","oa_version":"Published Version","PlanS_conform":"1","department":[{"_id":"TiBr"}],"external_id":{"isi":["001541172400002"],"arxiv":["2309.09699"]},"author":[{"full_name":"Barańczuk, Stefan","first_name":"Stefan","last_name":"Barańczuk"},{"full_name":"Naskręcki, Bartosz","last_name":"Naskręcki","first_name":"Bartosz"},{"orcid":"0000-0002-0854-0306","full_name":"Verzobio, Matteo","id":"7aa8f170-131e-11ed-88e1-a9efd01027cb","first_name":"Matteo","last_name":"Verzobio"}],"abstract":[{"lang":"eng","text":"Let A be an abelian variety defined over a number field K, E/K be an elliptic curve, and ϕ : A → Em be an isogeny defined over K. Let P ∈ A(K) be such that ϕ(P)=(Q1,..., Qm) with RankZ(⟨Q1,...,Qm⟩)=1. We will study a divisibility sequence related to the point P and show its relation with elliptic divisibility sequences."}]},{"date_updated":"2025-09-30T14:10:46Z","isi":1,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","publication_status":"published","year":"2025","volume":51,"oa_version":"None","_id":"20079","article_type":"original","abstract":[{"text":"Research question: Is LINC01638 involved in regulation of epithelial-to-mesenchymal transition (EMT) in endometriosis?\r\nDesign: A prospective patient cohort study was combined with functional experiments in the 12Z endometriosis epithelial cell line to investigate the role of LINC01638 in endometriosis. Eutopic endometrial samples were collected by curettage, and ectopic endometrial lesion samples were collected by laparoscopic surgery from 24 control patients and 41 patients with endometriosis. The phenotype of 12Z cells was assessed following LINC01638 knockdown using siRNA, performing proliferation, adhesion, migration and invasion assays, as well as assessing apoptosis and cell cycle changes with flow cytometry assays. In order to assess the relationship between LINC01638 and histone deacetylase class 1 enzyme (HDAC1), LINC01638 knockdown was combined with HDAC inhibition with the specific HDAC inhibitor romidepsin.\r\nResults: LINC01638 was up-regulated in the epithelial layer of endometriotic lesions, and LINC01638 knockdown in 12Z cells led to reduced proliferation, adhesion, migration and invasion. The reduction in proliferation was associated with increased p21 and p27 expression, and G1 phase arrest. Further analysis of LINC01638 control and knockdown cells revealed that a number of transcription factors associated with EMT are down-regulated in knockdown cells, along with the cytoskeleton regulatory gene RHOB, while HDAC1 was up-regulated. Chromatin immunoprecipitation analysis and HDAC1 inhibitory treatment combined with LINC01638 knockdown indicated that LINC01638 regulates RHOB expression via HDAC1-mediated promoter deacetylation. RHOB is up-regulated in the epithelial layer of endometriotic lesions compared with eutopic endometrium, supporting a role in the disease.\r\nConclusions: LINC01638 is an epigenetic regulator of the pathogenesis of endometriosis, promoting proliferation and EMT of endometriotic lesions.","lang":"eng"}],"external_id":{"pmid":["40680553"],"isi":["001549819000002"]},"author":[{"first_name":"Iveta","last_name":"Yotova","full_name":"Yotova, Iveta"},{"full_name":"Proestling, Katharina","first_name":"Katharina","last_name":"Proestling"},{"full_name":"Pauler, Florian","orcid":"0000-0002-7462-0048","id":"48EA0138-F248-11E8-B48F-1D18A9856A87","first_name":"Florian","last_name":"Pauler"},{"full_name":"Rainer, Lisa","first_name":"Lisa","last_name":"Rainer"},{"full_name":"Kaup, Leonie","first_name":"Leonie","last_name":"Kaup"},{"last_name":"Heine","first_name":"Jana","full_name":"Heine, Jana"},{"full_name":"Sandrieser, Lejla","first_name":"Lejla","last_name":"Sandrieser"},{"full_name":"Wenzl, René","last_name":"Wenzl","first_name":"René"},{"last_name":"Hudson","first_name":"Quanah J.","full_name":"Hudson, Quanah J."}],"department":[{"_id":"SiHi"}],"issue":"3","title":"LINC01638 promotes epithelial-to-mesenchymal transition in endometriosis epithelial cells by up-regulating RHOB via HDAC1 suppression","OA_type":"closed access","scopus_import":"1","publication_identifier":{"eissn":["1472-6491"],"issn":["1472-6483"]},"date_created":"2025-07-27T22:01:25Z","doi":"10.1016/j.rbmo.2025.104942","status":"public","type":"journal_article","day":"17","acknowledgement":"The authors wish to thank all the participants and health professionals involved in this study. In addition, the authors wish to thank technical assistants Barbara Widmar, Matthias Witzmann-Stern and Isabella Haslinger for their work assisting with this study; and Simon Hippenmeyer for access to bioinformatic infrastructure and resources.\r\nOpen access funding was provided by the Medical University of Vienna.","intvolume":"        51","article_number":"104942","citation":{"short":"I. Yotova, K. Proestling, F. Pauler, L. Rainer, L. Kaup, J. Heine, L. Sandrieser, R. Wenzl, Q.J. Hudson, Reproductive Biomedicine Online 51 (2025).","ista":"Yotova I, Proestling K, Pauler F, Rainer L, Kaup L, Heine J, Sandrieser L, Wenzl R, Hudson QJ. 2025. LINC01638 promotes epithelial-to-mesenchymal transition in endometriosis epithelial cells by up-regulating RHOB via HDAC1 suppression. Reproductive Biomedicine Online. 51(3), 104942.","apa":"Yotova, I., Proestling, K., Pauler, F., Rainer, L., Kaup, L., Heine, J., … Hudson, Q. J. (2025). LINC01638 promotes epithelial-to-mesenchymal transition in endometriosis epithelial cells by up-regulating RHOB via HDAC1 suppression. <i>Reproductive Biomedicine Online</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.rbmo.2025.104942\">https://doi.org/10.1016/j.rbmo.2025.104942</a>","mla":"Yotova, Iveta, et al. “LINC01638 Promotes Epithelial-to-Mesenchymal Transition in Endometriosis Epithelial Cells by up-Regulating RHOB via HDAC1 Suppression.” <i>Reproductive Biomedicine Online</i>, vol. 51, no. 3, 104942, Elsevier, 2025, doi:<a href=\"https://doi.org/10.1016/j.rbmo.2025.104942\">10.1016/j.rbmo.2025.104942</a>.","ama":"Yotova I, Proestling K, Pauler F, et al. LINC01638 promotes epithelial-to-mesenchymal transition in endometriosis epithelial cells by up-regulating RHOB via HDAC1 suppression. <i>Reproductive Biomedicine Online</i>. 2025;51(3). doi:<a href=\"https://doi.org/10.1016/j.rbmo.2025.104942\">10.1016/j.rbmo.2025.104942</a>","ieee":"I. Yotova <i>et al.</i>, “LINC01638 promotes epithelial-to-mesenchymal transition in endometriosis epithelial cells by up-regulating RHOB via HDAC1 suppression,” <i>Reproductive Biomedicine Online</i>, vol. 51, no. 3. Elsevier, 2025.","chicago":"Yotova, Iveta, Katharina Proestling, Florian Pauler, Lisa Rainer, Leonie Kaup, Jana Heine, Lejla Sandrieser, René Wenzl, and Quanah J. Hudson. “LINC01638 Promotes Epithelial-to-Mesenchymal Transition in Endometriosis Epithelial Cells by up-Regulating RHOB via HDAC1 Suppression.” <i>Reproductive Biomedicine Online</i>. Elsevier, 2025. <a href=\"https://doi.org/10.1016/j.rbmo.2025.104942\">https://doi.org/10.1016/j.rbmo.2025.104942</a>."},"date_published":"2025-07-17T00:00:00Z","quality_controlled":"1","article_processing_charge":"No","publication":"Reproductive Biomedicine Online","month":"07","pmid":1,"publisher":"Elsevier","language":[{"iso":"eng"}]},{"month":"07","pmid":1,"publisher":"Frontiers Media","OA_place":"publisher","language":[{"iso":"eng"}],"quality_controlled":"1","article_processing_charge":"Yes","publication":"Frontiers in Plant Science","citation":{"short":"M. Gallemi, J.C. Montesinos López, N. Zarevski, J. Pribyl, P. Skládal, E.B. Hannezo, E. Benková, Frontiers in Plant Science 16 (2025).","apa":"Gallemi, M., Montesinos López, J. C., Zarevski, N., Pribyl, J., Skládal, P., Hannezo, E. B., &#38; Benková, E. (2025). Dual role of pectin methyl esterase activity in the regulation of plant cell wall biophysical properties. <i>Frontiers in Plant Science</i>. Frontiers Media. <a href=\"https://doi.org/10.3389/fpls.2025.1612366\">https://doi.org/10.3389/fpls.2025.1612366</a>","ista":"Gallemi M, Montesinos López JC, Zarevski N, Pribyl J, Skládal P, Hannezo EB, Benková E. 2025. Dual role of pectin methyl esterase activity in the regulation of plant cell wall biophysical properties. Frontiers in Plant Science. 16, 1612366.","mla":"Gallemi, Marçal, et al. “Dual Role of Pectin Methyl Esterase Activity in the Regulation of Plant Cell Wall Biophysical Properties.” <i>Frontiers in Plant Science</i>, vol. 16, 1612366, Frontiers Media, 2025, doi:<a href=\"https://doi.org/10.3389/fpls.2025.1612366\">10.3389/fpls.2025.1612366</a>.","ama":"Gallemi M, Montesinos López JC, Zarevski N, et al. Dual role of pectin methyl esterase activity in the regulation of plant cell wall biophysical properties. <i>Frontiers in Plant Science</i>. 2025;16. doi:<a href=\"https://doi.org/10.3389/fpls.2025.1612366\">10.3389/fpls.2025.1612366</a>","ieee":"M. Gallemi <i>et al.</i>, “Dual role of pectin methyl esterase activity in the regulation of plant cell wall biophysical properties,” <i>Frontiers in Plant Science</i>, vol. 16. Frontiers Media, 2025.","chicago":"Gallemi, Marçal, Juan C Montesinos López, Nikola Zarevski, Jan Pribyl, Petr Skládal, Edouard B Hannezo, and Eva Benková. “Dual Role of Pectin Methyl Esterase Activity in the Regulation of Plant Cell Wall Biophysical Properties.” <i>Frontiers in Plant Science</i>. Frontiers Media, 2025. <a href=\"https://doi.org/10.3389/fpls.2025.1612366\">https://doi.org/10.3389/fpls.2025.1612366</a>."},"date_published":"2025-07-04T00:00:00Z","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"article_number":"1612366","intvolume":"        16","type":"journal_article","day":"04","acknowledgement":"The author(s) declare that financial support was received for the research and/or publication of this article. This work was supported by grants from the European Research Council (Starting Independent Research Grant ERC-2007-Stg- 207362-HCPO to EB) and MG was recipient of an IST Interdisciplinary project (IC1022IPC03).\r\nWe acknowledge Jaume F. Martı́nez Garcı́a for phyAphyB mutant seeds. We acknowledge CF Nanobiotechnology of CIISB, Instruct-CZ Centre, supported by MEYS CR (LM2018127). We gratefully acknowledge support by the Scientific Service Units at ISTA, including the Imaging and Optics and Lab Support facilities and Library. We thank Stefan Riegler for the efforts to establish immunodetection method.","DOAJ_listed":"1","doi":"10.3389/fpls.2025.1612366","date_created":"2025-07-27T22:01:26Z","has_accepted_license":"1","status":"public","publication_identifier":{"eissn":["1664-462X"]},"scopus_import":"1","corr_author":"1","ddc":["580"],"title":"Dual role of pectin methyl esterase activity in the regulation of plant cell wall biophysical properties","OA_type":"gold","department":[{"_id":"EdHa"},{"_id":"EvBe"},{"_id":"CaGu"}],"PlanS_conform":"1","acknowledged_ssus":[{"_id":"Bio"},{"_id":"LifeSc"},{"_id":"E-Lib"}],"abstract":[{"text":"Introduction: Acid-growth theory has been postulated in the 70s to explain the rapid elongation of plant cells in response to the hormone auxin. More recently, it has been demonstrated that activation of the proton ATPs pump (H+-ATPs) promoting acidification of the apoplast is the principal mechanism by which auxin and other hormones such as brassinosteroids (BR) induce cell elongation. Despite these advances, the impact of this acidification on the mechanical properties of the cell wall remained largely unexplored.\r\n\r\nMethods: Here, we use elongation assays of Arabidopsis thaliana hypocotyls and Atomic Force Microscopy (AFM) to correlate hormone-induced tissue elongation and local changes in cell wall mechanical properties. Furthermore, employing transgenic lines over-expressing Pectin Methyl Esterase (PME), along with calcium chelators, we investigate the effect of pectin modification in hormone-driven cell elongation.\r\n\r\nResults: We demonstrate that acidification of apoplast is necessary and sufficient to induce cell elongation through promoting cell wall softening. Moreover, we show that enhanced PME activity can induce both cell wall softening or stiffening in extracellular calcium dependent-manner and that tight control of PME activity is required for proper hypocotyl elongation.\r\n\r\nDiscussion: Our results confirm a dual role of PME in plant cell elongation. However, further investigation is needed to assess the status of pectin following short- or long-term PME treatments in order to determine if pectin methyl-esterification might promote its degradation as well as the role of PME inhibitors upon PME induction.","lang":"eng"}],"external_id":{"isi":["001530690900001"],"pmid":["40688689"]},"author":[{"first_name":"Marçal","last_name":"Gallemi","full_name":"Gallemi, Marçal","orcid":"0000-0003-4675-6893","id":"460C6802-F248-11E8-B48F-1D18A9856A87"},{"id":"310A8E3E-F248-11E8-B48F-1D18A9856A87","full_name":"Montesinos López, Juan C","orcid":"0000-0001-9179-6099","last_name":"Montesinos López","first_name":"Juan C"},{"last_name":"Zarevski","first_name":"Nikola","id":"18e95355-e05a-11ea-a9c0-8fba1b89e83a","full_name":"Zarevski, Nikola"},{"first_name":"Jan","last_name":"Pribyl","full_name":"Pribyl, Jan"},{"last_name":"Skládal","first_name":"Petr","full_name":"Skládal, Petr"},{"id":"3A9DB764-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6005-1561","full_name":"Hannezo, Edouard B","last_name":"Hannezo","first_name":"Edouard B"},{"orcid":"0000-0002-8510-9739","full_name":"Benková, Eva","id":"38F4F166-F248-11E8-B48F-1D18A9856A87","first_name":"Eva","last_name":"Benková"}],"oa":1,"article_type":"original","oa_version":"Published Version","ec_funded":1,"_id":"20080","project":[{"name":"Hormonal cross-talk in plant organogenesis","call_identifier":"FP7","_id":"253FCA6A-B435-11E9-9278-68D0E5697425","grant_number":"207362"},{"name":"IST Austria Open Access Fund","_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854"}],"publication_status":"published","year":"2025","volume":16,"APC_amount":"3642,79 EUR","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","isi":1,"file":[{"checksum":"9e6b8b53ba56d4a24a9bd91cf6d2dc58","date_created":"2025-07-31T07:28:54Z","success":1,"creator":"dernst","access_level":"open_access","relation":"main_file","content_type":"application/pdf","file_id":"20093","date_updated":"2025-07-31T07:28:54Z","file_size":3665187,"file_name":"2025_FrontiersPlantSc_Gallemi.pdf"}],"file_date_updated":"2025-07-31T07:28:54Z","date_updated":"2026-05-20T07:53:03Z"},{"month":"07","OA_place":"repository","publisher":"IEEE","language":[{"iso":"eng"}],"quality_controlled":"1","article_processing_charge":"No","publication":"IEEE Transactions on Information Theory","citation":{"apa":"Esposito, A. R., Gastpar, M., &#38; Issa, I. (2025). Sibson α-mutual information and its variational representations. <i>IEEE Transactions on Information Theory</i>. IEEE. <a href=\"https://doi.org/10.1109/TIT.2025.3587340\">https://doi.org/10.1109/TIT.2025.3587340</a>","ista":"Esposito AR, Gastpar M, Issa I. 2025. Sibson α-mutual information and its variational representations. IEEE Transactions on Information Theory.","short":"A.R. Esposito, M. Gastpar, I. Issa, IEEE Transactions on Information Theory (2025).","ieee":"A. R. Esposito, M. Gastpar, and I. Issa, “Sibson α-mutual information and its variational representations,” <i>IEEE Transactions on Information Theory</i>. IEEE, 2025.","chicago":"Esposito, Amedeo Roberto, Michael Gastpar, and Ibrahim Issa. “Sibson α-Mutual Information and Its Variational Representations.” <i>IEEE Transactions on Information Theory</i>. IEEE, 2025. <a href=\"https://doi.org/10.1109/TIT.2025.3587340\">https://doi.org/10.1109/TIT.2025.3587340</a>.","ama":"Esposito AR, Gastpar M, Issa I. Sibson α-mutual information and its variational representations. <i>IEEE Transactions on Information Theory</i>. 2025. doi:<a href=\"https://doi.org/10.1109/TIT.2025.3587340\">10.1109/TIT.2025.3587340</a>","mla":"Esposito, Amedeo Roberto, et al. “Sibson α-Mutual Information and Its Variational Representations.” <i>IEEE Transactions on Information Theory</i>, IEEE, 2025, doi:<a href=\"https://doi.org/10.1109/TIT.2025.3587340\">10.1109/TIT.2025.3587340</a>."},"date_published":"2025-07-11T00:00:00Z","type":"journal_article","day":"11","date_created":"2025-07-27T22:01:26Z","doi":"10.1109/TIT.2025.3587340","main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2405.08352","open_access":"1"}],"arxiv":1,"status":"public","publication_identifier":{"issn":["0018-9448"],"eissn":["1557-9654"]},"scopus_import":"1","title":"Sibson α-mutual information and its variational representations","OA_type":"green","department":[{"_id":"MaMo"}],"abstract":[{"lang":"eng","text":"Information measures can be constructed from Rényi divergences much like mutual information from Kullback-Leibler divergence. One such information measure is known as Sibson α-mutual information and has received renewed attention recently in several contexts: concentration of measure under dependence, statistical learning, hypothesis testing, and estimation theory. In this paper, we survey and extend the state of the art. In particular, we introduce variational representations for Sibson α-mutual information and employ them in each described context to derive novel results. Namely, we produce generalized Transportation-Cost inequalities and Fano-type inequalities. We also present an overview of known applications, spanning from learning theory and Bayesian risk to universal prediction."}],"external_id":{"arxiv":["2405.08352"]},"author":[{"first_name":"Amedeo Roberto","last_name":"Esposito","full_name":"Esposito, Amedeo Roberto","id":"9583e921-e1ad-11ec-9862-cef099626dc9"},{"first_name":"Michael","last_name":"Gastpar","full_name":"Gastpar, Michael"},{"full_name":"Issa, Ibrahim","first_name":"Ibrahim","last_name":"Issa"}],"oa":1,"article_type":"original","oa_version":"Preprint","_id":"20081","publication_status":"epub_ahead","year":"2025","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2026-02-16T11:49:40Z"},{"abstract":[{"text":"Efficient immune responses rely on the capacity of leukocytes to traverse diverse and complex tissues. To meet such changing environmental conditions, leukocytes usually adopt an ameboid configuration, using their forward-positioned nucleus as a probe to identify and follow the path of least resistance among pre-existing pores. We show that, in dense environments where even the largest pores preclude free passage, leukocytes position their nucleus behind the centrosome and organelles. The local compression imposed on the cell body by its surroundings triggers assembly of a central F-actin pool, located between cell front and nucleus. Central actin pushes outward to transiently dilate a path for organelles and nucleus. Pools of central and front actin are tightly coupled and experimental depletion of the central pool enhances actin accumulation and protrusion formation at the cell front. Although this shifted balance speeds up cells in permissive environments, migration in restrictive environments is impaired, as the unleashed leading edge dissociates from the trapped cell body. Our findings establish an actin regulatory loop that balances path dilation with advancement of the leading edge to maintain cellular coherence.","lang":"eng"}],"acknowledged_ssus":[{"_id":"Bio"},{"_id":"LifeSc"}],"author":[{"last_name":"Dos Reis Rodrigues","first_name":"Patricia","id":"26E95904-5160-11E9-9C0B-C5B0DC97E90F","full_name":"Dos Reis Rodrigues, Patricia","orcid":"0000-0003-1681-508X"},{"last_name":"Avellaneda Sarrió","first_name":"Mario","id":"DC4BA84C-56E6-11EA-AD5D-348C3DDC885E","full_name":"Avellaneda Sarrió, Mario","orcid":"0000-0001-6406-524X"},{"last_name":"Canigova","first_name":"Nikola","id":"3795523E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8518-5926","full_name":"Canigova, Nikola"},{"last_name":"Gärtner","first_name":"Florian R","id":"397A88EE-F248-11E8-B48F-1D18A9856A87","full_name":"Gärtner, Florian R","orcid":"0000-0001-6120-3723"},{"orcid":"0000-0001-7829-3518","full_name":"Vaahtomeri, Kari","id":"368EE576-F248-11E8-B48F-1D18A9856A87","first_name":"Kari","last_name":"Vaahtomeri"},{"id":"3BE60946-F248-11E8-B48F-1D18A9856A87","full_name":"Riedl, Michael","orcid":"0000-0003-4844-6311","last_name":"Riedl","first_name":"Michael"},{"full_name":"De Vries, Ingrid","id":"4C7D837E-F248-11E8-B48F-1D18A9856A87","first_name":"Ingrid","last_name":"De Vries"},{"orcid":"0000-0001-5145-4609","full_name":"Merrin, Jack","id":"4515C308-F248-11E8-B48F-1D18A9856A87","first_name":"Jack","last_name":"Merrin"},{"first_name":"Robert","last_name":"Hauschild","orcid":"0000-0001-9843-3522","full_name":"Hauschild, Robert","id":"4E01D6B4-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Fukui, Yoshinori","first_name":"Yoshinori","last_name":"Fukui"},{"first_name":"Alba","last_name":"Juanes Garcia","full_name":"Juanes Garcia, Alba","orcid":"0000-0002-1009-9652","id":"40F05888-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Sixt, Michael K","orcid":"0000-0002-6620-9179","id":"41E9FBEA-F248-11E8-B48F-1D18A9856A87","first_name":"Michael K","last_name":"Sixt"}],"external_id":{"isi":["001529134300001"],"pmid":["40664976"]},"department":[{"_id":"MiSi"},{"_id":"NanoFab"},{"_id":"Bio"}],"PlanS_conform":"1","oa_version":"Published Version","project":[{"name":"Pushing from within: Control of cell shape, integrity and motility by cytoskeletal pushing forces","grant_number":"101071793","_id":"bd91e723-d553-11ed-ba76-fe7eeb2185fd"},{"grant_number":"944-2020","_id":"c092d618-5a5b-11eb-8a69-f92e1e843fc8","name":"Bioelectric patrolling: the role of the local membrane potential in immune cell migration"}],"_id":"20082","oa":1,"page":"1258–1266","article_type":"letter_note","isi":1,"user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","file":[{"creator":"dernst","success":1,"date_created":"2025-07-31T08:00:33Z","checksum":"0c725123dca7797c682609bff2c4c5ac","access_level":"open_access","date_updated":"2025-07-31T08:00:33Z","file_size":13514646,"file_id":"20096","content_type":"application/pdf","relation":"main_file","file_name":"2025_NatureImmunology_ReisRodrigues.pdf"}],"related_material":{"link":[{"url":"https://ista.ac.at/en/news/bench-pressing-cells/","relation":"press_release","description":"News on ISTA website"}],"record":[{"id":"20149","status":"public","relation":"dissertation_contains"}]},"publication_status":"published","year":"2025","volume":26,"date_updated":"2026-04-28T13:26:50Z","file_date_updated":"2025-07-31T08:00:33Z","article_processing_charge":"Yes (via OA deal)","quality_controlled":"1","publication":"Nature Immunology","pmid":1,"month":"08","language":[{"iso":"eng"}],"publisher":"Springer Nature","OA_place":"publisher","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"intvolume":"        26","date_published":"2025-08-01T00:00:00Z","citation":{"ista":"Dos Reis Rodrigues P, Avellaneda Sarrió M, Canigova N, Gärtner FR, Vaahtomeri K, Riedl M, de Vries I, Merrin J, Hauschild R, Fukui Y, Juanes Garcia A, Sixt MK. 2025. Migrating immune cells globally coordinate protrusive forces. Nature Immunology. 26, 1258–1266.","apa":"Dos Reis Rodrigues, P., Avellaneda Sarrió, M., Canigova, N., Gärtner, F. R., Vaahtomeri, K., Riedl, M., … Sixt, M. K. (2025). Migrating immune cells globally coordinate protrusive forces. <i>Nature Immunology</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41590-025-02211-w\">https://doi.org/10.1038/s41590-025-02211-w</a>","short":"P. Dos Reis Rodrigues, M. Avellaneda Sarrió, N. Canigova, F.R. Gärtner, K. Vaahtomeri, M. Riedl, I. de Vries, J. Merrin, R. Hauschild, Y. Fukui, A. Juanes Garcia, M.K. Sixt, Nature Immunology 26 (2025) 1258–1266.","ama":"Dos Reis Rodrigues P, Avellaneda Sarrió M, Canigova N, et al. Migrating immune cells globally coordinate protrusive forces. <i>Nature Immunology</i>. 2025;26:1258–1266. doi:<a href=\"https://doi.org/10.1038/s41590-025-02211-w\">10.1038/s41590-025-02211-w</a>","ieee":"P. Dos Reis Rodrigues <i>et al.</i>, “Migrating immune cells globally coordinate protrusive forces,” <i>Nature Immunology</i>, vol. 26. Springer Nature, pp. 1258–1266, 2025.","chicago":"Dos Reis Rodrigues, Patricia, Mario Avellaneda Sarrió, Nikola Canigova, Florian R Gärtner, Kari Vaahtomeri, Michael Riedl, Ingrid de Vries, et al. “Migrating Immune Cells Globally Coordinate Protrusive Forces.” <i>Nature Immunology</i>. Springer Nature, 2025. <a href=\"https://doi.org/10.1038/s41590-025-02211-w\">https://doi.org/10.1038/s41590-025-02211-w</a>.","mla":"Dos Reis Rodrigues, Patricia, et al. “Migrating Immune Cells Globally Coordinate Protrusive Forces.” <i>Nature Immunology</i>, vol. 26, Springer Nature, 2025, pp. 1258–1266, doi:<a href=\"https://doi.org/10.1038/s41590-025-02211-w\">10.1038/s41590-025-02211-w</a>."},"date_created":"2025-07-27T22:01:26Z","doi":"10.1038/s41590-025-02211-w","status":"public","has_accepted_license":"1","type":"journal_article","day":"01","acknowledgement":"This research was supported by the Scientific Service Units of ISTA through resources provided by the Imaging and Optics, Preclinical and Lab Support Facilities. In particular, we thank M. A. Symth and F. G. G. Leite, from the Virus Service Team, who helped generating the lentiviral particles used in this study. We thank all the members of the Sixt group for valuable discussions and feedback, in particular, I. Mayer, for helping with T cell isolation and Z. (P.) Li for providing the Actin–GFP DC line. We are also thankful to J. Mandl and C. Shen for their feedback during the writing of this manuscript. This work was supported by a European Research Council grant ERC-SyG 101071793 to M.S. M.J.A. was supported by an HFSP Postdoctoral Fellowship LTF 177 2021 and A.J.G. by a Lise Meitner Fellowship of the FWF (Austrian Science Fund). Y.F. was supported by the AMED-CREST (JP19gm1310005), the Medical Research Center Initiative for High Depth Omics and CURE:JPMXP1323015486 for MIB, Kyushu University. Open access funding provided by Institute of Science and Technology (IST Austria).","OA_type":"hybrid","title":"Migrating immune cells globally coordinate protrusive forces","corr_author":"1","ddc":["570"],"scopus_import":"1","publication_identifier":{"eissn":["1529-2916"],"issn":["1529-2908"]}},{"oa":1,"article_type":"original","oa_version":"Published Version","project":[{"name":"IST-BRIDGE: International postdoctoral program","grant_number":"101034413","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c","call_identifier":"H2020"}],"_id":"20098","ec_funded":1,"department":[{"_id":"CaMu"}],"PlanS_conform":"1","abstract":[{"lang":"eng","text":"Climate change is causing wildfires to become more frequent and intense. While predicting burned areas using bioclimatic and anthropogenic factors is an active research area, few studies have examined what drives the economic damages of wildfires. Our study aims to fill this gap by analyzing key factors influencing global economic wildfire damages and projecting future damages under three shared socioeconomic pathways (SSPs). We apply regression analyses to identify significant predictors of economic wildfire damages at country levels and use the fitted model to project future damages under SSP126, SSP245, and SSP370. Results show that the human vulnerability index (HVI), reflecting socioeconomic conditions, is the strongest predictor of historical wildfire damages, followed by water vapor pressure deficit during the fire season and population density around forested areas. We found high population density to be associated with lower damages. These findings contrast with studies of burned areas, where climate factors are more dominant. Our model projects that by 2070, average global economic wildfire damages will be three times higher under SSP370 than SSP126. Our model also shows that following SSP126 not only reduces wildfire damages but also lessens the inequalities in damage distribution across countries. This pathway’s dual focus on equitable socioeconomic progress and climate action potentially enhances a country’s resilience that helps mitigate wildfire damages. Our analyses also indicate that strong socioeconomic development can offset wildfire damages associated with climate hazards, although this is less certain under SSP370. SSP126’s integrated approach improves both socioeconomic conditions and limits global warming, providing substantial benefits to less developed countries while still reducing damages in developed nations, despite their already low HVI scores. Our work complements existing research on burned areas and underscores the importance of sustainable development and international collaboration in reducing the economic damages of wildfires."}],"author":[{"last_name":"Hwong","first_name":"Yi-Ling","id":"1217aa61-4dd1-11ec-9ac3-f2ba3f17ee22","full_name":"Hwong, Yi-Ling","orcid":"0000-0001-9281-3479"},{"first_name":"Edward","last_name":"Byers","full_name":"Byers, Edward"},{"first_name":"Michaela","last_name":"Werning","full_name":"Werning, Michaela"},{"last_name":"Quilcaille","first_name":"Yann","full_name":"Quilcaille, Yann"}],"file_date_updated":"2025-08-04T07:38:14Z","date_updated":"2025-08-04T07:46:33Z","publication_status":"published","volume":4,"year":"2025","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file":[{"access_level":"open_access","creator":"dernst","success":1,"date_created":"2025-08-04T07:38:14Z","checksum":"ca679496767021e792b0378c48fdee8c","file_name":"2025_EnvironResearchClimate_Hwong.pdf","file_size":2807041,"date_updated":"2025-08-04T07:38:14Z","file_id":"20108","content_type":"application/pdf","relation":"main_file"}],"related_material":{"record":[{"relation":"research_data","status":"public","id":"20107"}]},"date_published":"2025-07-15T00:00:00Z","citation":{"mla":"Hwong, Yi-Ling, et al. “Sustainable Development Key to Limiting Climate Change-Driven Wildfire Damages.” <i>Environmental Research: Climate</i>, vol. 4, no. 3, 035005, IOP Publishing, 2025, doi:<a href=\"https://doi.org/10.1088/2752-5295/adec11\">10.1088/2752-5295/adec11</a>.","ieee":"Y.-L. Hwong, E. Byers, M. Werning, and Y. Quilcaille, “Sustainable development key to limiting climate change-driven wildfire damages,” <i>Environmental Research: Climate</i>, vol. 4, no. 3. IOP Publishing, 2025.","chicago":"Hwong, Yi-Ling, Edward Byers, Michaela Werning, and Yann Quilcaille. “Sustainable Development Key to Limiting Climate Change-Driven Wildfire Damages.” <i>Environmental Research: Climate</i>. IOP Publishing, 2025. <a href=\"https://doi.org/10.1088/2752-5295/adec11\">https://doi.org/10.1088/2752-5295/adec11</a>.","ama":"Hwong Y-L, Byers E, Werning M, Quilcaille Y. Sustainable development key to limiting climate change-driven wildfire damages. <i>Environmental Research: Climate</i>. 2025;4(3). doi:<a href=\"https://doi.org/10.1088/2752-5295/adec11\">10.1088/2752-5295/adec11</a>","short":"Y.-L. Hwong, E. Byers, M. Werning, Y. Quilcaille, Environmental Research: Climate 4 (2025).","ista":"Hwong Y-L, Byers E, Werning M, Quilcaille Y. 2025. Sustainable development key to limiting climate change-driven wildfire damages. Environmental Research: Climate. 4(3), 035005.","apa":"Hwong, Y.-L., Byers, E., Werning, M., &#38; Quilcaille, Y. (2025). Sustainable development key to limiting climate change-driven wildfire damages. <i>Environmental Research: Climate</i>. IOP Publishing. <a href=\"https://doi.org/10.1088/2752-5295/adec11\">https://doi.org/10.1088/2752-5295/adec11</a>"},"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"intvolume":"         4","article_number":"035005","month":"07","language":[{"iso":"eng"}],"OA_place":"publisher","publisher":"IOP Publishing","article_processing_charge":"Yes","quality_controlled":"1","publication":"Environmental Research: Climate","corr_author":"1","ddc":["550"],"scopus_import":"1","publication_identifier":{"eissn":["2752-5295"]},"OA_type":"gold","title":"Sustainable development key to limiting climate change-driven wildfire damages","issue":"3","day":"15","type":"journal_article","DOAJ_listed":"1","acknowledgement":"We thank Marina Andrijevic, Giacomo Falchetta, Samuel Lüthi, Caroline Muller, Carl Schleussner, and Adriano Vinca for providing useful ideas and feedback for this work. YLH is supported by funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska‐Curie Grant No. 101034413. EB, MW, and YQ are supported by the European Union’s Horizon Europe research and innovation programme under Grant Agreement No. 101081369 (SPARCCLE). We also thank the two anonymous reviewers for providing helpful feedback that greatly improved this manuscript.","doi":"10.1088/2752-5295/adec11","date_created":"2025-07-31T14:03:16Z","status":"public","has_accepted_license":"1"},{"doi":"10.1016/j.celrep.2025.116080","date_created":"2025-08-03T22:01:30Z","status":"public","has_accepted_license":"1","type":"journal_article","day":"01","acknowledgement":"We thank Andrea Navas-Olive and Rebecca J. Morse-Mora for critically reading an earlier version of the manuscript. We also thank Florian Marr and Christina Altmutter for excellent technical assistance, Alois Schlögl for programming and data-handling assistance, Todor Asenov for technical support, and Eleftheria Kralli-Beller for manuscript editing. This research was supported by the Scientific Services Units (SSUs) of ISTA. We are particularly grateful for assistance from the Imaging and Optics Facility, Preclinical Facility, Lab Support Facility, and Miba Machine Shop. The project received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation program (grant agreement no. 692692 to P.J., Marie Skłodowska-Curie Actions Individual Fellowship no. 101026635 to J.F.W., and an ISTplus Fellowship through Marie Skłodowska-Curie grant agreement no. 754411 to V.V.-B.), the Austrian Science Fund (P 36232-B, PAT 4178023, and Cluster of Excellence 10.55776/COE16 to P.J.), and a CONACyT fellowship (289638 to V.V.-B.) and was supported by a non-stipendiary EMBO fellowship (ALTF 756–2020 to J.F.W.).","DOAJ_listed":"1","issue":"8","title":"Cell-specific wiring routes information flow through hippocampal CA3","OA_type":"gold","publication_identifier":{"issn":["2639-1856"],"eissn":["2211-1247"]},"scopus_import":"1","ddc":["570"],"corr_author":"1","quality_controlled":"1","article_processing_charge":"Yes","publication":"Cell Reports","month":"08","publisher":"Elsevier","OA_place":"publisher","language":[{"iso":"eng"}],"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"article_number":"116080","intvolume":"        44","citation":{"apa":"Watson, J., Vargas Barroso, V. M., &#38; Jonas, P. M. (2025). Cell-specific wiring routes information flow through hippocampal CA3. <i>Cell Reports</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.celrep.2025.116080\">https://doi.org/10.1016/j.celrep.2025.116080</a>","ista":"Watson J, Vargas Barroso VM, Jonas PM. 2025. Cell-specific wiring routes information flow through hippocampal CA3. Cell Reports. 44(8), 116080.","short":"J. Watson, V.M. Vargas Barroso, P.M. Jonas, Cell Reports 44 (2025).","chicago":"Watson, Jake, Victor M Vargas Barroso, and Peter M Jonas. “Cell-Specific Wiring Routes Information Flow through Hippocampal CA3.” <i>Cell Reports</i>. Elsevier, 2025. <a href=\"https://doi.org/10.1016/j.celrep.2025.116080\">https://doi.org/10.1016/j.celrep.2025.116080</a>.","ieee":"J. Watson, V. M. Vargas Barroso, and P. M. Jonas, “Cell-specific wiring routes information flow through hippocampal CA3,” <i>Cell Reports</i>, vol. 44, no. 8. Elsevier, 2025.","ama":"Watson J, Vargas Barroso VM, Jonas PM. Cell-specific wiring routes information flow through hippocampal CA3. <i>Cell Reports</i>. 2025;44(8). doi:<a href=\"https://doi.org/10.1016/j.celrep.2025.116080\">10.1016/j.celrep.2025.116080</a>","mla":"Watson, Jake, et al. “Cell-Specific Wiring Routes Information Flow through Hippocampal CA3.” <i>Cell Reports</i>, vol. 44, no. 8, 116080, Elsevier, 2025, doi:<a href=\"https://doi.org/10.1016/j.celrep.2025.116080\">10.1016/j.celrep.2025.116080</a>."},"date_published":"2025-08-01T00:00:00Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","isi":1,"file":[{"relation":"main_file","file_id":"20106","content_type":"application/pdf","date_updated":"2025-08-04T06:53:07Z","file_size":27695214,"file_name":"2025_CellReports_Watson.pdf","checksum":"556ff9760661ecd23949d75031043b1f","date_created":"2025-08-04T06:53:07Z","success":1,"creator":"dernst","access_level":"open_access"}],"publication_status":"published","volume":44,"year":"2025","date_updated":"2025-09-30T14:12:02Z","file_date_updated":"2025-08-04T06:53:07Z","acknowledged_ssus":[{"_id":"Bio"},{"_id":"PreCl"},{"_id":"LifeSc"},{"_id":"M-Shop"}],"abstract":[{"text":"The hippocampus, critical for learning and memory, is dogmatically described as a trisynaptic circuit where dentate gyrus granule cells (GCs), CA3 pyramidal neurons (PNs), and CA1 PNs are serially connected. However, CA3 also forms an autoassociative network, and its PNs have diverse morphologies, intrinsic properties, and GC input levels. How PN subtypes compose this recurrent network is unknown. To determine the synaptic arrangement of identified CA3 PNs, we combine multicellular patch-clamp recording and post hoc morphological analysis in mouse hippocampal slices. PNs can be divided into distinct “superficial” and “deep” subclasses, the latter including previously reported “athorny” cells. Subclasses have distinct input-output transformations and asymmetric connectivity, which is more abundant from superficial to deep PNs, splitting CA3 locally into two parallel recurrent networks. Coincident spontaneous inhibition occurs frequently within but not between subclasses, implying subclass-specific inhibitory innervation. Our results suggest two separately controlled sublayers for parallel information processing in hippocampal CA3.","lang":"eng"}],"external_id":{"isi":["001544472300002"]},"author":[{"first_name":"Jake","last_name":"Watson","orcid":"0000-0002-8698-3823","full_name":"Watson, Jake","id":"63836096-4690-11EA-BD4E-32803DDC885E"},{"first_name":"Victor M","last_name":"Vargas Barroso","full_name":"Vargas Barroso, Victor M","id":"2F55A9DE-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Peter M","last_name":"Jonas","full_name":"Jonas, Peter M","orcid":"0000-0001-5001-4804","id":"353C1B58-F248-11E8-B48F-1D18A9856A87"}],"department":[{"_id":"PeJo"}],"PlanS_conform":"1","oa_version":"Published Version","_id":"20099","project":[{"call_identifier":"H2020","_id":"25B7EB9E-B435-11E9-9278-68D0E5697425","grant_number":"692692","name":"Biophysics and circuit function of a giant cortical glutamatergic synapse"},{"call_identifier":"H2020","_id":"fc2be41b-9c52-11eb-aca3-faa90aa144e9","grant_number":"101026635","name":"Synaptic computations of the hippocampal CA3 circuitry"},{"name":"Mechanisms of GABA release in hippocampal circuits","_id":"bd88be38-d553-11ed-ba76-81d5a70a6ef5","grant_number":"P36232"},{"name":"ISTplus - Postdoctoral Fellowships","call_identifier":"H2020","_id":"260C2330-B435-11E9-9278-68D0E5697425","grant_number":"754411"}],"ec_funded":1,"oa":1,"article_type":"original"},{"date_published":"2025-06-27T00:00:00Z","citation":{"apa":"Vedula, S., Bronstein, A. M., &#38; Marx, A. (2025). Improving prediction accuracy in chimeric proteins with windowed multiple sequence alignment. <i>Computational and Structural Biotechnology Journal</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.csbj.2025.07.039\">https://doi.org/10.1016/j.csbj.2025.07.039</a>","ista":"Vedula S, Bronstein AM, Marx A. 2025. Improving prediction accuracy in chimeric proteins with windowed multiple sequence alignment. Computational and Structural Biotechnology Journal. 27, 3292–3298.","short":"S. Vedula, A.M. Bronstein, A. Marx, Computational and Structural Biotechnology Journal 27 (2025) 3292–3298.","ama":"Vedula S, Bronstein AM, Marx A. Improving prediction accuracy in chimeric proteins with windowed multiple sequence alignment. <i>Computational and Structural Biotechnology Journal</i>. 2025;27:3292-3298. doi:<a href=\"https://doi.org/10.1016/j.csbj.2025.07.039\">10.1016/j.csbj.2025.07.039</a>","chicago":"Vedula, Sanketh, Alex M. Bronstein, and Ailie Marx. “Improving Prediction Accuracy in Chimeric Proteins with Windowed Multiple Sequence Alignment.” <i>Computational and Structural Biotechnology Journal</i>. Elsevier, 2025. <a href=\"https://doi.org/10.1016/j.csbj.2025.07.039\">https://doi.org/10.1016/j.csbj.2025.07.039</a>.","ieee":"S. Vedula, A. M. Bronstein, and A. Marx, “Improving prediction accuracy in chimeric proteins with windowed multiple sequence alignment,” <i>Computational and Structural Biotechnology Journal</i>, vol. 27. Elsevier, pp. 3292–3298, 2025.","mla":"Vedula, Sanketh, et al. “Improving Prediction Accuracy in Chimeric Proteins with Windowed Multiple Sequence Alignment.” <i>Computational and Structural Biotechnology Journal</i>, vol. 27, Elsevier, 2025, pp. 3292–98, doi:<a href=\"https://doi.org/10.1016/j.csbj.2025.07.039\">10.1016/j.csbj.2025.07.039</a>."},"intvolume":"        27","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"language":[{"iso":"eng"}],"publisher":"Elsevier","OA_place":"publisher","month":"06","publication":"Computational and Structural Biotechnology Journal","article_processing_charge":"Yes","quality_controlled":"1","ddc":["000","570"],"publication_identifier":{"eissn":["2001-0370"]},"scopus_import":"1","OA_type":"gold","title":"Improving prediction accuracy in chimeric proteins with windowed multiple sequence alignment","DOAJ_listed":"1","acknowledgement":"AM acknowledges the financial support of the Helmsley Fellowships Program for Sustainability and Health. AMB is supported by the Schmidt Chair in Artificial Intelligence.","day":"27","type":"journal_article","status":"public","has_accepted_license":"1","date_created":"2025-08-03T22:01:31Z","doi":"10.1016/j.csbj.2025.07.039","page":"3292-3298","article_type":"original","oa":1,"_id":"20100","oa_version":"Published Version","PlanS_conform":"1","department":[{"_id":"AlBr"}],"author":[{"id":"94f2fe44-70fa-11f0-b76b-92922c09452b","full_name":"Vedula, Sanketh","last_name":"Vedula","first_name":"Sanketh"},{"last_name":"Bronstein","first_name":"Alexander","id":"58f3726e-7cba-11ef-ad8b-e6e8cb3904e6","full_name":"Bronstein, Alexander","orcid":"0000-0001-9699-8730"},{"full_name":"Marx, Ailie","first_name":"Ailie","last_name":"Marx"}],"external_id":{"isi":["001583543100001"]},"abstract":[{"text":"A key step in protein structure prediction involves the detection of co-evolving pairs of residues, a signal for spatial proximity. This information is gleaned from multiple sequence alignment and underscores Alphafold’s structure prediction for almost every known protein. A simple means to create proteins beyond those found in nature, is by unnaturally fusing together two known proteins or protein parts. Here we demonstrate that structured peptides are predicted with significantly reduced accuracy when added to the terminal ends of scaffold proteins. Appending the multiple sequence alignment for the individual peptide tags to that of the scaffold protein often restores prediction accuracy. This work suggests that this windowed multiple sequence alignment approach can be a useful tool for predicting the structure of fused, chimeric proteins.","lang":"eng"}],"file_date_updated":"2025-08-04T06:25:23Z","date_updated":"2025-11-27T14:09:59Z","year":"2025","volume":27,"publication_status":"published","file":[{"file_name":"2025_CompStrucBiotechJour_Vedula.pdf","date_updated":"2025-08-04T06:25:23Z","file_size":6609770,"file_id":"20104","content_type":"application/pdf","relation":"main_file","access_level":"open_access","creator":"dernst","success":1,"date_created":"2025-08-04T06:25:23Z","checksum":"78d01f30fc1dc11dd2bd1d7bb7ac8a62"}],"related_material":{"record":[{"id":"20103","status":"public","relation":"software"}],"link":[{"url":"https://github.com/sankethvedula/AFChimera","relation":"software"}]},"isi":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"}]