[{"language":[{"iso":"eng"}],"page":"405 - 421","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","type":"journal_article","title":"The retention of dust in protoplanetary disks: evidence from agglomeration olivine chondrules from the outer solar system","volume":223,"year":"2018","month":"02","oa_version":"None","publication":"Geochimica et Cosmochimica Acta","publisher":"Elsevier","quality_controlled":"1","date_published":"2018-02-15T00:00:00Z","publication_status":"published","extern":"1","day":"15","status":"public","_id":"124","citation":{"ista":"Waitukaitis SR, Schrader D, Nagashima K, Davidson J, Mccoy T, Conolly Jr H, Lauretta D. 2018. The retention of dust in protoplanetary disks: evidence from agglomeration olivine chondrules from the outer solar system. Geochimica et Cosmochimica Acta. 223, 405–421.","mla":"Waitukaitis, Scott R., et al. “The Retention of Dust in Protoplanetary Disks: Evidence from Agglomeration Olivine Chondrules from the Outer Solar System.” Geochimica et Cosmochimica Acta, vol. 223, Elsevier, 2018, pp. 405–21, doi:10.1016/j.gca.2017.12.014.","chicago":"Waitukaitis, Scott R, Devin Schrader, Kazuhide Nagashima, Jemma Davidson, Timothy Mccoy, Harold Conolly Jr, and Dante Lauretta. “The Retention of Dust in Protoplanetary Disks: Evidence from Agglomeration Olivine Chondrules from the Outer Solar System.” Geochimica et Cosmochimica Acta. Elsevier, 2018. https://doi.org/10.1016/j.gca.2017.12.014.","ieee":"S. R. Waitukaitis et al., “The retention of dust in protoplanetary disks: evidence from agglomeration olivine chondrules from the outer solar system,” Geochimica et Cosmochimica Acta, vol. 223. Elsevier, pp. 405–421, 2018.","ama":"Waitukaitis SR, Schrader D, Nagashima K, et al. The retention of dust in protoplanetary disks: evidence from agglomeration olivine chondrules from the outer solar system. Geochimica et Cosmochimica Acta. 2018;223:405-421. doi:10.1016/j.gca.2017.12.014","short":"S.R. Waitukaitis, D. Schrader, K. Nagashima, J. Davidson, T. Mccoy, H. Conolly Jr, D. Lauretta, Geochimica et Cosmochimica Acta 223 (2018) 405–421.","apa":"Waitukaitis, S. R., Schrader, D., Nagashima, K., Davidson, J., Mccoy, T., Conolly Jr, H., & Lauretta, D. (2018). The retention of dust in protoplanetary disks: evidence from agglomeration olivine chondrules from the outer solar system. Geochimica et Cosmochimica Acta. Elsevier. https://doi.org/10.1016/j.gca.2017.12.014"},"doi":"10.1016/j.gca.2017.12.014","date_created":"2018-12-11T11:44:45Z","date_updated":"2021-01-12T06:49:19Z","author":[{"orcid":"0000-0002-2299-3176","last_name":"Waitukaitis","id":"3A1FFC16-F248-11E8-B48F-1D18A9856A87","first_name":"Scott R","full_name":"Waitukaitis, Scott R"},{"last_name":"Schrader","first_name":"Devin","full_name":"Schrader, Devin"},{"first_name":"Kazuhide","full_name":"Nagashima, Kazuhide","last_name":"Nagashima"},{"last_name":"Davidson","first_name":"Jemma","full_name":"Davidson, Jemma"},{"full_name":"Mccoy, Timothy","first_name":"Timothy","last_name":"Mccoy"},{"full_name":"Conolly Jr, Harold","first_name":"Harold","last_name":"Conolly Jr"},{"last_name":"Lauretta","first_name":"Dante","full_name":"Lauretta, Dante"}],"intvolume":" 223","publist_id":"7930","abstract":[{"text":"By investigating the in situ chemical and O-isotope compositions of olivine in lightly sintered dust agglomerates from the early Solar System, we constrain their origins and the retention of dust in the protoplanetary disk. The grain sizes of silicates in these agglomeratic olivine (AO) chondrules indicate that the grain sizes of chondrule precursors in the Renazzo-like carbonaceous (CR) chondrites ranged from <1 to 80 µm. We infer this grain size range to be equivalent to the size range for dust in the early Solar System. AO chondrules may contain, but are not solely composed of, recycled fragments of earlier formed chondrules. They also contain 16O-rich olivine related to amoeboid olivine aggregates and represent the best record of chondrule-precursor materials. AO chondrules contain one or more large grains, sometimes similar to FeO-poor (type I) and/or FeO-rich (type II) chondrules, while others contain a type II chondrule core. These morphologies are consistent with particle agglomeration by electrostatic charging of grains during collision, a process that may explain solid agglomeration in the protoplanetary disk in the micrometer size regime. The petrographic, isotopic, and chemical compositions of AO chondrules are consistent with chondrule formation by large-scale shocks, bow shocks, and current sheets. The petrographic, isotopic, and chemical similarities between AO chondrules in CR chondrites and chondrule-like objects from comet 81P/Wild 2 indicate that comets contain AO chondrules. We infer that these AO chondrules likely formed in the inner Solar System and migrated to the comet forming region at least 3 Ma after the formation of the first Solar System solids. Observations made in this study imply that the protoplanetary disk retained a dusty disk at least ∼3.7 Ma after the formation of the first Solar System solids, longer than half of the dusty accretion disks observed around other stars.","lang":"eng"}]},{"year":"2018","volume":227,"month":"06","oa_version":"None","page":"8 - 16","language":[{"iso":"eng"}],"user_id":"4435EBFC-F248-11E8-B48F-1D18A9856A87","type":"journal_article","title":"A high-speed tracking algorithm for dense granular media","publication_status":"published","extern":"1","day":"01","publication":"Computer Physics Communications","publisher":"Elsevier","quality_controlled":"1","date_published":"2018-06-01T00:00:00Z","doi":"10.1016/j.cpc.2018.02.010","date_created":"2018-12-11T11:44:45Z","_id":"125","status":"public","citation":{"apa":"Cerda, M., Waitukaitis, S. R., Navarro, C., Silva, J., Mujica, N., & Hitschfeld, N. (2018). A high-speed tracking algorithm for dense granular media. Computer Physics Communications. Elsevier. https://doi.org/10.1016/j.cpc.2018.02.010","mla":"Cerda, Mauricio, et al. “A High-Speed Tracking Algorithm for Dense Granular Media.” Computer Physics Communications, vol. 227, Elsevier, 2018, pp. 8–16, doi:10.1016/j.cpc.2018.02.010.","ista":"Cerda M, Waitukaitis SR, Navarro C, Silva J, Mujica N, Hitschfeld N. 2018. A high-speed tracking algorithm for dense granular media. Computer Physics Communications. 227, 8–16.","ieee":"M. Cerda, S. R. Waitukaitis, C. Navarro, J. Silva, N. Mujica, and N. Hitschfeld, “A high-speed tracking algorithm for dense granular media,” Computer Physics Communications, vol. 227. Elsevier, pp. 8–16, 2018.","chicago":"Cerda, Mauricio, Scott R Waitukaitis, Cristóbal Navarro, Juan Silva, Nicolás Mujica, and Nancy Hitschfeld. “A High-Speed Tracking Algorithm for Dense Granular Media.” Computer Physics Communications. Elsevier, 2018. https://doi.org/10.1016/j.cpc.2018.02.010.","ama":"Cerda M, Waitukaitis SR, Navarro C, Silva J, Mujica N, Hitschfeld N. A high-speed tracking algorithm for dense granular media. Computer Physics Communications. 2018;227:8-16. doi:10.1016/j.cpc.2018.02.010","short":"M. Cerda, S.R. Waitukaitis, C. Navarro, J. Silva, N. Mujica, N. Hitschfeld, Computer Physics Communications 227 (2018) 8–16."},"intvolume":" 227","abstract":[{"text":"Many fields of study, including medical imaging, granular physics, colloidal physics, and active matter, require the precise identification and tracking of particle-like objects in images. While many algorithms exist to track particles in diffuse conditions, these often perform poorly when particles are densely packed together—as in, for example, solid-like systems of granular materials. Incorrect particle identification can have significant effects on the calculation of physical quantities, which makes the development of more precise and faster tracking algorithms a worthwhile endeavor. In this work, we present a new tracking algorithm to identify particles in dense systems that is both highly accurate and fast. We demonstrate the efficacy of our approach by analyzing images of dense, solid-state granular media, where we achieve an identification error of 5% in the worst evaluated cases. Going further, we propose a parallelization strategy for our algorithm using a GPU, which results in a speedup of up to 10× when compared to a sequential CPU implementation in C and up to 40× when compared to the reference MATLAB library widely used for particle tracking. Our results extend the capabilities of state-of-the-art particle tracking methods by allowing fast, high-fidelity detection in dense media at high resolutions.","lang":"eng"}],"publist_id":"7928","date_updated":"2021-01-12T06:49:23Z","author":[{"full_name":"Cerda, Mauricio","first_name":"Mauricio","last_name":"Cerda"},{"last_name":"Waitukaitis","orcid":"0000-0002-2299-3176","id":"3A1FFC16-F248-11E8-B48F-1D18A9856A87","first_name":"Scott R","full_name":"Waitukaitis, Scott R"},{"first_name":"Cristóbal","full_name":"Navarro, Cristóbal","last_name":"Navarro"},{"first_name":"Juan","full_name":"Silva, Juan","last_name":"Silva"},{"last_name":"Mujica","full_name":"Mujica, Nicolás","first_name":"Nicolás"},{"last_name":"Hitschfeld","full_name":"Hitschfeld, Nancy","first_name":"Nancy"}]},{"author":[{"id":"3A1FFC16-F248-11E8-B48F-1D18A9856A87","last_name":"Waitukaitis","orcid":"0000-0002-2299-3176","full_name":"Waitukaitis, Scott R","first_name":"Scott R"},{"last_name":"Harth","full_name":"Harth, Kirsten","first_name":"Kirsten"},{"last_name":"Van Hecke","first_name":"Martin","full_name":"Van Hecke, Martin"}],"date_updated":"2021-01-12T06:49:27Z","issue":"4","intvolume":" 121","abstract":[{"lang":"eng","text":"The Leidenfrost effect occurs when a liquid or stiff sublimable solid near a hot surface creates enough vapor beneath it to lift itself up and float. In contrast, vaporizable soft solids, e.g., hydrogels, have been shown to exhibit persistent bouncing - the elastic Leidenfrost effect. By carefully lowering hydrogel spheres towards a hot surface, we discover that they are also capable of floating. The bounce-to-float transition is controlled by the approach velocity and temperature, analogously to the "dynamic Leidenfrost effect." For the floating regime, we measure power-law scalings for the gap geometry, which we explain with a model that couples the vaporization rate to the spherical shape. Our results reveal that hydrogels are a promising pathway for controlling floating Leidenfrost objects through shape."}],"publist_id":"7927","citation":{"mla":"Waitukaitis, Scott R., et al. “From Bouncing to Floating: The Leidenfrost Effect with Hydrogel Spheres.” Physical Review Letters, vol. 121, no. 4, 048001, American Physical Society, 2018, doi:10.1103/PhysRevLett.121.048001.","ista":"Waitukaitis SR, Harth K, Van Hecke M. 2018. From bouncing to floating: the Leidenfrost effect with hydrogel spheres. Physical Review Letters. 121(4), 048001.","chicago":"Waitukaitis, Scott R, Kirsten Harth, and Martin Van Hecke. “From Bouncing to Floating: The Leidenfrost Effect with Hydrogel Spheres.” Physical Review Letters. American Physical Society, 2018. https://doi.org/10.1103/PhysRevLett.121.048001.","short":"S.R. Waitukaitis, K. Harth, M. Van Hecke, Physical Review Letters 121 (2018).","ama":"Waitukaitis SR, Harth K, Van Hecke M. From bouncing to floating: the Leidenfrost effect with hydrogel spheres. Physical Review Letters. 2018;121(4). doi:10.1103/PhysRevLett.121.048001","ieee":"S. R. Waitukaitis, K. Harth, and M. Van Hecke, “From bouncing to floating: the Leidenfrost effect with hydrogel spheres,” Physical Review Letters, vol. 121, no. 4. American Physical Society, 2018.","apa":"Waitukaitis, S. R., Harth, K., & Van Hecke, M. (2018). From bouncing to floating: the Leidenfrost effect with hydrogel spheres. Physical Review Letters. American Physical Society. https://doi.org/10.1103/PhysRevLett.121.048001"},"status":"public","_id":"126","doi":"10.1103/PhysRevLett.121.048001","acknowledgement":"We acknowledge funding from the Netherlands Organization for Scientific Research through Grants VICI No. NWO- 680-47-609 (M. v. H. and S. W.) and VENI No. NWO-680- 47-453 (S. W.), and from the German Science Foundation through Grant No. HA8467/1-1 (K. H.).","date_created":"2018-12-11T11:44:46Z","publisher":"American Physical Society","publication":"Physical Review Letters","article_number":"048001 ","quality_controlled":"1","date_published":"2018-07-25T00:00:00Z","extern":"1","publication_status":"published","day":"25","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","type":"journal_article","language":[{"iso":"eng"}],"title":"From bouncing to floating: the Leidenfrost effect with hydrogel spheres","month":"07","volume":121,"year":"2018","oa_version":"None"},{"publication_status":"published","quality_controlled":"1","oa_version":"Published Version","volume":33,"title":"Interannual variability in glacier contribution to runoff from a high‐elevation Andean catchment: Understanding the role of debris cover in glacier hydrology","keyword":["Water Science and Technology"],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","language":[{"iso":"eng"}],"page":"214-229","issue":"2","intvolume":" 33","author":[{"last_name":"Burger","full_name":"Burger, Flavia","first_name":"Flavia"},{"first_name":"Alvaro","full_name":"Ayala, Alvaro","last_name":"Ayala"},{"first_name":"David","full_name":"Farias, David","last_name":"Farias"},{"first_name":"Thomas E.","full_name":"Shaw, Thomas E.","last_name":"Shaw"},{"full_name":"MacDonell, Shelley","first_name":"Shelley","last_name":"MacDonell"},{"last_name":"Brock","full_name":"Brock, Ben","first_name":"Ben"},{"first_name":"James","full_name":"McPhee, James","last_name":"McPhee"},{"last_name":"Pellicciotti","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","first_name":"Francesca","full_name":"Pellicciotti, Francesca"}],"oa":1,"status":"public","day":"26","extern":"1","date_published":"2018-11-26T00:00:00Z","publisher":"Wiley","publication":"Hydrological Processes","month":"11","year":"2018","type":"journal_article","publication_identifier":{"issn":["0885-6087"],"eissn":["1099-1085"]},"abstract":[{"text":"We present a field-data rich modelling analysis to reconstruct the climatic forcing, glacier response, and runoff generation from a high-elevation catchment in central Chile over the period 2000–2015 to provide insights into the differing contributions of debris-covered and debris-free glaciers under current and future changing climatic conditions. Model simulations with the physically based glacio-hydrological model TOPKAPI-ETH reveal a period of neutral or slightly positive mass balance between 2000 and 2010, followed by a transition to increasingly large annual mass losses, associated with a recent mega drought. Mass losses commence earlier, and are more severe, for a heavily debris-covered glacier, most likely due to its strong dependence on snow avalanche accumulation, which has declined in recent years. Catchment runoff shows a marked decreasing trend over the study period, but with high interannual variability directly linked to winter snow accumulation, and high contribution from ice melt in dry periods and drought conditions. The study demonstrates the importance of incorporating local-scale processes such as snow avalanche accumulation and spatially variable debris thickness, in understanding the responses of different glacier types to climate change. We highlight the increased dependency of runoff from high Andean catchments on the diminishing resource of glacier ice during dry years.","lang":"eng"}],"date_updated":"2023-02-28T11:49:36Z","scopus_import":"1","date_created":"2023-02-20T08:13:14Z","article_type":"original","doi":"10.1002/hyp.13354","article_processing_charge":"No","citation":{"ista":"Burger F, Ayala A, Farias D, Shaw TE, MacDonell S, Brock B, McPhee J, Pellicciotti F. 2018. Interannual variability in glacier contribution to runoff from a high‐elevation Andean catchment: Understanding the role of debris cover in glacier hydrology. Hydrological Processes. 33(2), 214–229.","mla":"Burger, Flavia, et al. “Interannual Variability in Glacier Contribution to Runoff from a High‐elevation Andean Catchment: Understanding the Role of Debris Cover in Glacier Hydrology.” Hydrological Processes, vol. 33, no. 2, Wiley, 2018, pp. 214–29, doi:10.1002/hyp.13354.","ieee":"F. Burger et al., “Interannual variability in glacier contribution to runoff from a high‐elevation Andean catchment: Understanding the role of debris cover in glacier hydrology,” Hydrological Processes, vol. 33, no. 2. Wiley, pp. 214–229, 2018.","ama":"Burger F, Ayala A, Farias D, et al. Interannual variability in glacier contribution to runoff from a high‐elevation Andean catchment: Understanding the role of debris cover in glacier hydrology. Hydrological Processes. 2018;33(2):214-229. doi:10.1002/hyp.13354","chicago":"Burger, Flavia, Alvaro Ayala, David Farias, Thomas E. Shaw, Shelley MacDonell, Ben Brock, James McPhee, and Francesca Pellicciotti. “Interannual Variability in Glacier Contribution to Runoff from a High‐elevation Andean Catchment: Understanding the Role of Debris Cover in Glacier Hydrology.” Hydrological Processes. Wiley, 2018. https://doi.org/10.1002/hyp.13354.","short":"F. Burger, A. Ayala, D. Farias, T.E. Shaw, S. MacDonell, B. Brock, J. McPhee, F. Pellicciotti, Hydrological Processes 33 (2018) 214–229.","apa":"Burger, F., Ayala, A., Farias, D., Shaw, T. E., MacDonell, S., Brock, B., … Pellicciotti, F. (2018). Interannual variability in glacier contribution to runoff from a high‐elevation Andean catchment: Understanding the role of debris cover in glacier hydrology. Hydrological Processes. Wiley. https://doi.org/10.1002/hyp.13354"},"main_file_link":[{"url":"https://doi.org/10.1002/hyp.13354","open_access":"1"}],"_id":"12603"},{"date_created":"2023-02-20T08:13:18Z","article_type":"letter_note","doi":"10.1029/2018gl079678","article_processing_charge":"No","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1029/2018GL079678"}],"citation":{"ista":"Miles ES, Willis I, Buri P, Steiner JF, Arnold NS, Pellicciotti F. 2018. Surface pond energy absorption across four Himalayan Glaciers accounts for 1/8 of total catchment ice loss. Geophysical Research Letters. 45(19), 10464–10473.","mla":"Miles, Evan S., et al. “Surface Pond Energy Absorption across Four Himalayan Glaciers Accounts for 1/8 of Total Catchment Ice Loss.” Geophysical Research Letters, vol. 45, no. 19, American Geophysical Union, 2018, pp. 10464–73, doi:10.1029/2018gl079678.","chicago":"Miles, Evan S., Ian Willis, Pascal Buri, Jakob F. Steiner, Neil S. Arnold, and Francesca Pellicciotti. “Surface Pond Energy Absorption across Four Himalayan Glaciers Accounts for 1/8 of Total Catchment Ice Loss.” Geophysical Research Letters. American Geophysical Union, 2018. https://doi.org/10.1029/2018gl079678.","ama":"Miles ES, Willis I, Buri P, Steiner JF, Arnold NS, Pellicciotti F. Surface pond energy absorption across four Himalayan Glaciers accounts for 1/8 of total catchment ice loss. Geophysical Research Letters. 2018;45(19):10464-10473. doi:10.1029/2018gl079678","ieee":"E. S. Miles, I. Willis, P. Buri, J. F. Steiner, N. S. Arnold, and F. Pellicciotti, “Surface pond energy absorption across four Himalayan Glaciers accounts for 1/8 of total catchment ice loss,” Geophysical Research Letters, vol. 45, no. 19. American Geophysical Union, pp. 10464–10473, 2018.","short":"E.S. Miles, I. Willis, P. Buri, J.F. Steiner, N.S. Arnold, F. Pellicciotti, Geophysical Research Letters 45 (2018) 10464–10473.","apa":"Miles, E. S., Willis, I., Buri, P., Steiner, J. F., Arnold, N. S., & Pellicciotti, F. (2018). Surface pond energy absorption across four Himalayan Glaciers accounts for 1/8 of total catchment ice loss. Geophysical Research Letters. American Geophysical Union. https://doi.org/10.1029/2018gl079678"},"_id":"12604","abstract":[{"text":"Glaciers in the high mountains of Asia provide an important water resource for millions of people. Many of these glaciers are partially covered by rocky debris, which protects the ice from solar radiation and warm air. However, studies have found that the surface of these debris-covered glaciers is actually lowering as fast as glaciers without debris. Water ponded on the surface of the glaciers may be partially responsible, as water can absorb atmospheric energy very efficiently. However, the overall effect of these ponds has not been thoroughly assessed yet. We study a valley in Nepal for which we have extensive weather measurements, and we use a numerical model to calculate the energy absorbed by ponds on the surface of the glaciers over 6 months. As we have not observed each individual pond thoroughly, we run the model 5,000 times with different setups. We find that ponds are extremely important for glacier melt and absorb energy 14 times as quickly as the debris-covered ice. Although the ponds account for 1% of the glacier area covered by rocks, and only 0.3% of the total glacier area, they absorb enough energy to account for one eighth of the whole valley's ice loss.","lang":"eng"}],"date_updated":"2023-02-28T11:46:48Z","scopus_import":"1","month":"10","year":"2018","type":"journal_article","publication_identifier":{"eissn":["1944-8007"],"issn":["0094-8276"]},"day":"18","extern":"1","date_published":"2018-10-18T00:00:00Z","publisher":"American Geophysical Union","publication":"Geophysical Research Letters","oa":1,"status":"public","intvolume":" 45","issue":"19","author":[{"last_name":"Miles","first_name":"Evan S.","full_name":"Miles, Evan S."},{"full_name":"Willis, Ian","first_name":"Ian","last_name":"Willis"},{"last_name":"Buri","first_name":"Pascal","full_name":"Buri, Pascal"},{"full_name":"Steiner, Jakob F.","first_name":"Jakob F.","last_name":"Steiner"},{"last_name":"Arnold","first_name":"Neil S.","full_name":"Arnold, Neil S."},{"full_name":"Pellicciotti, Francesca","first_name":"Francesca","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","last_name":"Pellicciotti"}],"oa_version":"Published Version","volume":45,"title":"Surface pond energy absorption across four Himalayan Glaciers accounts for 1/8 of total catchment ice loss","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","keyword":["General Earth and Planetary Sciences","Geophysics"],"page":"10464-10473","language":[{"iso":"eng"}],"publication_status":"published","quality_controlled":"1"},{"type":"journal_article","publication_identifier":{"issn":["0043-1397"],"eissn":["1944-7973"]},"month":"06","year":"2018","publisher":"American Geophysical Union","publication":"Water Resources Research","date_published":"2018-06-07T00:00:00Z","extern":"1","day":"07","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1029/2017WR021606"}],"citation":{"apa":"Clemenzi, I., Pellicciotti, F., & Burlando, P. (2018). Snow depth structure, fractal behavior, and interannual consistency over Haut Glacier d’Arolla, Switzerland. Water Resources Research. American Geophysical Union. https://doi.org/10.1029/2017wr021606","ieee":"I. Clemenzi, F. Pellicciotti, and P. Burlando, “Snow depth structure, fractal behavior, and interannual consistency over Haut Glacier d’Arolla, Switzerland,” Water Resources Research, vol. 54, no. 10. American Geophysical Union, pp. 7929–7945, 2018.","ama":"Clemenzi I, Pellicciotti F, Burlando P. Snow depth structure, fractal behavior, and interannual consistency over Haut Glacier d’Arolla, Switzerland. Water Resources Research. 2018;54(10):7929-7945. doi:10.1029/2017wr021606","short":"I. Clemenzi, F. Pellicciotti, P. Burlando, Water Resources Research 54 (2018) 7929–7945.","chicago":"Clemenzi, I., Francesca Pellicciotti, and P. Burlando. “Snow Depth Structure, Fractal Behavior, and Interannual Consistency over Haut Glacier d’Arolla, Switzerland.” Water Resources Research. American Geophysical Union, 2018. https://doi.org/10.1029/2017wr021606.","mla":"Clemenzi, I., et al. “Snow Depth Structure, Fractal Behavior, and Interannual Consistency over Haut Glacier d’Arolla, Switzerland.” Water Resources Research, vol. 54, no. 10, American Geophysical Union, 2018, pp. 7929–45, doi:10.1029/2017wr021606.","ista":"Clemenzi I, Pellicciotti F, Burlando P. 2018. Snow depth structure, fractal behavior, and interannual consistency over Haut Glacier d’Arolla, Switzerland. Water Resources Research. 54(10), 7929–7945."},"_id":"12605","article_processing_charge":"No","doi":"10.1029/2017wr021606","date_created":"2023-02-20T08:13:31Z","article_type":"original","scopus_import":"1","date_updated":"2024-10-14T12:04:41Z","abstract":[{"lang":"eng","text":"Snow depth patterns over glaciers are controlled by precipitation, snow redistribution due to wind and avalanches, and the exchange of energy with the atmosphere that determines snow ablation. While many studies have advanced the understanding of ablation processes, less is known about winter snow patterns and their variability over glaciers. We analyze snow depth on Haut Glacier d'Arolla, Switzerland, in the two winter seasons 2006–2007 and 2010–2011 to (1) understand whether snow depth over an alpine glacier at the end of the accumulation season exhibits a behavior similar to the one observed on single slopes and vegetated areas; and (2) investigate the snow pattern consistency over the two accumulation seasons. We perform this analysis on a data set of high-resolution lidar-derived snow depth using variograms and fractal parameters. Our first main result is that snow depth patterns on the glacier exhibit a multiscale behavior, with a scale break around 20 m after which the fractal dimension increases, indicating more autocorrelated structure before the scale break than after. Second, this behavior is consistent over the two years, with fractal parameters and their spatial variability almost constant in the two seasons. We also show that snow depth patterns exhibit a distinct behavior in the glacier tongue and the upper catchment, with longer correlation distances on the tongue in the direction of the main winds, suggesting spatial distinctions that are likely induced by different processes and that should be taken into account when extrapolating snow depth from limited samples."}],"keyword":["Water Science and Technology"],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","language":[{"iso":"eng"}],"page":"7929-7945","title":"Snow depth structure, fractal behavior, and interannual consistency over Haut Glacier d'Arolla, Switzerland","volume":54,"oa_version":"Published Version","quality_controlled":"1","publication_status":"published","status":"public","oa":1,"author":[{"full_name":"Clemenzi, I.","first_name":"I.","last_name":"Clemenzi"},{"full_name":"Pellicciotti, Francesca","first_name":"Francesca","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","last_name":"Pellicciotti","orcid":"0000-0002-5554-8087"},{"last_name":"Burlando","first_name":"P.","full_name":"Burlando, P."}],"intvolume":" 54","issue":"10"},{"abstract":[{"text":"Ice cliffs within a supraglacial debris cover have been identified as a source for high ablation relative to the surrounding debris-covered area. Due to their small relative size and steep orientation, ice cliffs are difficult to detect using nadir-looking space borne sensors. The method presented here uses surface slopes calculated from digital elevation model (DEM) data to map ice cliff geometry and produce an ice cliff probability map. Surface slope thresholds, which can be sensitive to geographic location and/or data quality, are selected automatically. The method also attempts to include area at the (often narrowing) ends of ice cliffs which could otherwise be neglected due to signal saturation in surface slope data. The method was calibrated in the eastern Alaska Range, Alaska, USA, against a control ice cliff dataset derived from high-resolution visible and thermal data. Using the same input parameter set that performed best in Alaska, the method was tested against ice cliffs manually mapped in the Khumbu Himal, Nepal. Our results suggest the method can accommodate different glaciological settings and different DEM data sources without a data intensive (high-resolution, multi-data source) recalibration.","lang":"eng"}],"date_updated":"2023-02-28T11:39:26Z","scopus_import":"1","date_created":"2023-02-20T08:13:36Z","article_type":"original","doi":"10.5194/tc-12-1811-2018","article_processing_charge":"No","citation":{"apa":"Herreid, S., & Pellicciotti, F. (2018). Automated detection of ice cliffs within supraglacial debris cover. The Cryosphere. Copernicus Publications. https://doi.org/10.5194/tc-12-1811-2018","ama":"Herreid S, Pellicciotti F. Automated detection of ice cliffs within supraglacial debris cover. The Cryosphere. 2018;12(5):1811-1829. doi:10.5194/tc-12-1811-2018","ieee":"S. Herreid and F. Pellicciotti, “Automated detection of ice cliffs within supraglacial debris cover,” The Cryosphere, vol. 12, no. 5. Copernicus Publications, pp. 1811–1829, 2018.","short":"S. Herreid, F. Pellicciotti, The Cryosphere 12 (2018) 1811–1829.","chicago":"Herreid, Sam, and Francesca Pellicciotti. “Automated Detection of Ice Cliffs within Supraglacial Debris Cover.” The Cryosphere. Copernicus Publications, 2018. https://doi.org/10.5194/tc-12-1811-2018.","ista":"Herreid S, Pellicciotti F. 2018. Automated detection of ice cliffs within supraglacial debris cover. The Cryosphere. 12(5), 1811–1829.","mla":"Herreid, Sam, and Francesca Pellicciotti. “Automated Detection of Ice Cliffs within Supraglacial Debris Cover.” The Cryosphere, vol. 12, no. 5, Copernicus Publications, 2018, pp. 1811–29, doi:10.5194/tc-12-1811-2018."},"main_file_link":[{"url":"https://doi.org/10.5194/tc-12-1811-2018","open_access":"1"}],"_id":"12606","day":"31","extern":"1","date_published":"2018-05-31T00:00:00Z","publisher":"Copernicus Publications","publication":"The Cryosphere","month":"05","year":"2018","type":"journal_article","publication_identifier":{"issn":["1994-0424"]},"issue":"5","intvolume":" 12","author":[{"last_name":"Herreid","first_name":"Sam","full_name":"Herreid, Sam"},{"last_name":"Pellicciotti","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","first_name":"Francesca","full_name":"Pellicciotti, Francesca"}],"oa":1,"status":"public","publication_status":"published","quality_controlled":"1","oa_version":"Published Version","volume":12,"title":"Automated detection of ice cliffs within supraglacial debris cover","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","keyword":["Earth-Surface Processes","Water Science and Technology"],"page":"1811-1829","language":[{"iso":"eng"}]},{"type":"journal_article","publication_identifier":{"eissn":["1091-6490"],"issn":["0027-8424"]},"month":"04","year":"2018","publisher":"Proceedings of the National Academy of Sciences","publication":"PNAS","date_published":"2018-04-09T00:00:00Z","extern":"1","day":"09","citation":{"apa":"Buri, P., & Pellicciotti, F. (2018). Aspect controls the survival of ice cliffs on debris-covered glaciers. PNAS. Proceedings of the National Academy of Sciences. https://doi.org/10.1073/pnas.1713892115","mla":"Buri, Pascal, and Francesca Pellicciotti. “Aspect Controls the Survival of Ice Cliffs on Debris-Covered Glaciers.” PNAS, vol. 115, no. 17, Proceedings of the National Academy of Sciences, 2018, pp. 4369–74, doi:10.1073/pnas.1713892115.","ista":"Buri P, Pellicciotti F. 2018. Aspect controls the survival of ice cliffs on debris-covered glaciers. PNAS. 115(17), 4369–4374.","ama":"Buri P, Pellicciotti F. Aspect controls the survival of ice cliffs on debris-covered glaciers. PNAS. 2018;115(17):4369-4374. doi:10.1073/pnas.1713892115","ieee":"P. Buri and F. Pellicciotti, “Aspect controls the survival of ice cliffs on debris-covered glaciers,” PNAS, vol. 115, no. 17. Proceedings of the National Academy of Sciences, pp. 4369–4374, 2018.","chicago":"Buri, Pascal, and Francesca Pellicciotti. “Aspect Controls the Survival of Ice Cliffs on Debris-Covered Glaciers.” PNAS. Proceedings of the National Academy of Sciences, 2018. https://doi.org/10.1073/pnas.1713892115.","short":"P. Buri, F. Pellicciotti, PNAS 115 (2018) 4369–4374."},"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1073/pnas.1713892115"}],"_id":"12607","article_processing_charge":"No","doi":"10.1073/pnas.1713892115","date_created":"2023-02-20T08:13:41Z","article_type":"original","scopus_import":"1","date_updated":"2023-02-28T11:35:18Z","abstract":[{"text":"Supraglacial ice cliffs exist on debris-covered glaciers worldwide, but despite their importance as melt hot spots, their life cycle is little understood. Early field observations had advanced a hypothesis of survival of north-facing and disappearance of south-facing cliffs, which is central for predicting the contribution of cliffs to total glacier mass losses. Their role as windows of energy transfer suggests they may explain the anomalously high mass losses of debris-covered glaciers in High Mountain Asia (HMA) despite the insulating debris, currently at the center of a debated controversy. We use a 3D model of cliff evolution coupled to very high-resolution topographic data to demonstrate that ice cliffs facing south (in the Northern Hemisphere) disappear within a few months due to enhanced solar radiation receipts and that aspect is the key control on cliffs evolution. We reproduce continuous flattening of south-facing cliffs, a result of their vertical gradient of incoming solar radiation and sky view factor. Our results establish that only north-facing cliffs are recurrent features and thus stable contributors to the melting of debris-covered glaciers. Satellite observations and mass balance modeling confirms that few south-facing cliffs of small size exist on the glaciers of Langtang, and their contribution to the glacier volume losses is very small (∼1%). This has major implications for the mass balance of HMA debris-covered glaciers as it provides the basis for new parameterizations of cliff evolution and distribution to constrain volume losses in a region where glaciers are highly relevant as water sources for millions of people.","lang":"eng"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","page":"4369-4374","language":[{"iso":"eng"}],"title":"Aspect controls the survival of ice cliffs on debris-covered glaciers","volume":115,"oa_version":"Published Version","quality_controlled":"1","publication_status":"published","status":"public","oa":1,"author":[{"last_name":"Buri","first_name":"Pascal","full_name":"Buri, Pascal"},{"last_name":"Pellicciotti","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","first_name":"Francesca","full_name":"Pellicciotti, Francesca"}],"intvolume":" 115","issue":"17"},{"extern":"1","publication_status":"published","day":"28","publisher":"Nature Publishing Group","publication":"Nature Physics","date_published":"2018-05-28T00:00:00Z","month":"05","volume":14,"year":"2018","oa_version":"None","user_id":"2EBD1598-F248-11E8-B48F-1D18A9856A87","type":"journal_article","page":"777 - 778","language":[{"iso":"eng"}],"title":"Clicks for doughnuts","issue":"8","intvolume":" 14","publist_id":"7926","abstract":[{"text":"The ideas of topology are breaking ground in origami-based metamaterials. Experiments now show that certain shapes — doughnuts included — exhibit topological bistability, and can be made to click between different topologically stable states.","lang":"eng"}],"author":[{"full_name":"Waitukaitis, Scott R","first_name":"Scott R","id":"3A1FFC16-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2299-3176","last_name":"Waitukaitis"}],"date_updated":"2021-01-12T06:49:31Z","doi":"10.1038/s41567-018-0160-6","date_created":"2018-12-11T11:44:46Z","citation":{"apa":"Waitukaitis, S. R. (2018). Clicks for doughnuts. Nature Physics. Nature Publishing Group. https://doi.org/10.1038/s41567-018-0160-6","short":"S.R. Waitukaitis, Nature Physics 14 (2018) 777–778.","ama":"Waitukaitis SR. Clicks for doughnuts. Nature Physics. 2018;14(8):777-778. doi:10.1038/s41567-018-0160-6","chicago":"Waitukaitis, Scott R. “Clicks for Doughnuts.” Nature Physics. Nature Publishing Group, 2018. https://doi.org/10.1038/s41567-018-0160-6.","ieee":"S. R. Waitukaitis, “Clicks for doughnuts,” Nature Physics, vol. 14, no. 8. Nature Publishing Group, pp. 777–778, 2018.","ista":"Waitukaitis SR. 2018. Clicks for doughnuts. Nature Physics. 14(8), 777–778.","mla":"Waitukaitis, Scott R. “Clicks for Doughnuts.” Nature Physics, vol. 14, no. 8, Nature Publishing Group, 2018, pp. 777–78, doi:10.1038/s41567-018-0160-6."},"status":"public","_id":"127"},{"type":"research_data_reference","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"Social network plasticity decreases disease transmission in a eusocial insect","year":"2018","department":[{"_id":"SyCr"}],"month":"10","oa_version":"Published Version","publisher":"Zenodo","date_published":"2018-10-23T00:00:00Z","day":"23","status":"public","_id":"13055","ddc":["570"],"main_file_link":[{"open_access":"1","url":"https://doi.org/10.5281/zenodo.1480665"}],"citation":{"apa":"Stroeymeyt, N., Grasse, A. V., Crespi, A., Mersch, D., Cremer, S., & Keller, L. (2018). Social network plasticity decreases disease transmission in a eusocial insect. Zenodo. https://doi.org/10.5281/ZENODO.1322669","mla":"Stroeymeyt, Nathalie, et al. Social Network Plasticity Decreases Disease Transmission in a Eusocial Insect. Zenodo, 2018, doi:10.5281/ZENODO.1322669.","ista":"Stroeymeyt N, Grasse AV, Crespi A, Mersch D, Cremer S, Keller L. 2018. Social network plasticity decreases disease transmission in a eusocial insect, Zenodo, 10.5281/ZENODO.1322669.","ieee":"N. Stroeymeyt, A. V. Grasse, A. Crespi, D. Mersch, S. Cremer, and L. Keller, “Social network plasticity decreases disease transmission in a eusocial insect.” Zenodo, 2018.","short":"N. Stroeymeyt, A.V. Grasse, A. Crespi, D. Mersch, S. Cremer, L. Keller, (2018).","chicago":"Stroeymeyt, Nathalie, Anna V Grasse, Alessandro Crespi, Danielle Mersch, Sylvia Cremer, and Laurent Keller. “Social Network Plasticity Decreases Disease Transmission in a Eusocial Insect.” Zenodo, 2018. https://doi.org/10.5281/ZENODO.1322669.","ama":"Stroeymeyt N, Grasse AV, Crespi A, Mersch D, Cremer S, Keller L. Social network plasticity decreases disease transmission in a eusocial insect. 2018. doi:10.5281/ZENODO.1322669"},"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"article_processing_charge":"No","doi":"10.5281/ZENODO.1322669","oa":1,"date_created":"2023-05-23T13:24:51Z","related_material":{"record":[{"id":"7","status":"public","relation":"used_in_publication"}]},"date_updated":"2026-06-18T19:15:22Z","author":[{"full_name":"Stroeymeyt, Nathalie","first_name":"Nathalie","last_name":"Stroeymeyt"},{"first_name":"Anna V","full_name":"Grasse, Anna V","last_name":"Grasse","id":"406F989C-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Crespi","first_name":"Alessandro","full_name":"Crespi, Alessandro"},{"last_name":"Mersch","first_name":"Danielle","full_name":"Mersch, Danielle"},{"full_name":"Cremer, Sylvia","first_name":"Sylvia","id":"2F64EC8C-F248-11E8-B48F-1D18A9856A87","last_name":"Cremer","orcid":"0000-0002-2193-3868"},{"last_name":"Keller","first_name":"Laurent","full_name":"Keller, Laurent"}],"abstract":[{"text":"Dataset for manuscript 'Social network plasticity decreases disease transmission in a eusocial insect'\r\nCompared to previous versions: - raw image files added\r\n - correction of URLs within README.txt file\r\n","lang":"eng"}]},{"doi":"10.5281/ZENODO.2025846","oa":1,"date_created":"2023-05-23T16:08:20Z","_id":"13059","ddc":["570"],"status":"public","main_file_link":[{"url":"https://doi.org/10.5281/zenodo.3271452","open_access":"1"}],"citation":{"apa":"Garriga, E., di Tommaso, P., Magis, C., Erb, I., Mansouri, L., Baltzis, A., … Notredame, C. (2018). Fast and accurate large multiple sequence alignments with a root-to-leaf regressive method. Zenodo. https://doi.org/10.5281/ZENODO.2025846","ieee":"E. Garriga et al., “Fast and accurate large multiple sequence alignments with a root-to-leaf regressive method.” Zenodo, 2018.","chicago":"Garriga, Edgar, Paolo di Tommaso, Cedrik Magis, Ionas Erb, Leila Mansouri, Athanasios Baltzis, Hafid Laayouni, Fyodor Kondrashov, Evan Floden, and Cedric Notredame. “Fast and Accurate Large Multiple Sequence Alignments with a Root-to-Leaf Regressive Method.” Zenodo, 2018. https://doi.org/10.5281/ZENODO.2025846.","ama":"Garriga E, di Tommaso P, Magis C, et al. Fast and accurate large multiple sequence alignments with a root-to-leaf regressive method. 2018. doi:10.5281/ZENODO.2025846","short":"E. Garriga, P. di Tommaso, C. Magis, I. Erb, L. Mansouri, A. Baltzis, H. Laayouni, F. Kondrashov, E. Floden, C. Notredame, (2018).","mla":"Garriga, Edgar, et al. Fast and Accurate Large Multiple Sequence Alignments with a Root-to-Leaf Regressive Method. Zenodo, 2018, doi:10.5281/ZENODO.2025846.","ista":"Garriga E, di Tommaso P, Magis C, Erb I, Mansouri L, Baltzis A, Laayouni H, Kondrashov F, Floden E, Notredame C. 2018. Fast and accurate large multiple sequence alignments with a root-to-leaf regressive method, Zenodo, 10.5281/ZENODO.2025846."},"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"article_processing_charge":"No","abstract":[{"lang":"eng","text":"This dataset contains a GitHub repository containing all the data, analysis, Nextflow workflows and Jupyter notebooks to replicate the manuscript titled \"Fast and accurate large multiple sequence alignments with a root-to-leaf regressive method\".\r\nIt also contains the Multiple Sequence Alignments (MSAs) generated and well as the main figures and tables from the manuscript.\r\nThe repository is also available at GitHub (https://github.com/cbcrg/dpa-analysis) release `v1.2`.\r\nFor details on how to use the regressive alignment algorithm, see the T-Coffee software suite (https://github.com/cbcrg/tcoffee)."}],"related_material":{"record":[{"id":"7181","relation":"used_in_publication","status":"public"}]},"date_updated":"2025-07-10T11:54:19Z","author":[{"last_name":"Garriga","full_name":"Garriga, Edgar","first_name":"Edgar"},{"first_name":"Paolo","full_name":"di Tommaso, Paolo","last_name":"di Tommaso"},{"last_name":"Magis","first_name":"Cedrik","full_name":"Magis, Cedrik"},{"last_name":"Erb","full_name":"Erb, Ionas","first_name":"Ionas"},{"last_name":"Mansouri","full_name":"Mansouri, Leila","first_name":"Leila"},{"last_name":"Baltzis","full_name":"Baltzis, Athanasios","first_name":"Athanasios"},{"full_name":"Laayouni, Hafid","first_name":"Hafid","last_name":"Laayouni"},{"first_name":"Fyodor","full_name":"Kondrashov, Fyodor","last_name":"Kondrashov","orcid":"0000-0001-8243-4694","id":"44FDEF62-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Floden","full_name":"Floden, Evan","first_name":"Evan"},{"first_name":"Cedric","full_name":"Notredame, Cedric","last_name":"Notredame"}],"year":"2018","department":[{"_id":"FyKo"}],"month":"12","oa_version":"Published Version","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","type":"research_data_reference","title":"Fast and accurate large multiple sequence alignments with a root-to-leaf regressive method","day":"07","publisher":"Zenodo","date_published":"2018-12-07T00:00:00Z"},{"quality_controlled":"1","file_date_updated":"2020-07-14T12:44:43Z","publication_status":"published","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","language":[{"iso":"eng"}],"page":"360 - 375","title":"Defining lineage potential and fate behavior of precursors during pancreas development","volume":46,"oa_version":"Published Version","author":[{"first_name":"Magdalena","full_name":"Sznurkowska, Magdalena","last_name":"Sznurkowska"},{"last_name":"Hannezo","orcid":"0000-0001-6005-1561","id":"3A9DB764-F248-11E8-B48F-1D18A9856A87","first_name":"Edouard B","full_name":"Hannezo, Edouard B"},{"full_name":"Azzarelli, Roberta","first_name":"Roberta","last_name":"Azzarelli"},{"last_name":"Rulands","full_name":"Rulands, Steffen","first_name":"Steffen"},{"full_name":"Nestorowa, Sonia","first_name":"Sonia","last_name":"Nestorowa"},{"first_name":"Christopher","full_name":"Hindley, Christopher","last_name":"Hindley"},{"last_name":"Nichols","first_name":"Jennifer","full_name":"Nichols, Jennifer"},{"last_name":"Göttgens","first_name":"Berthold","full_name":"Göttgens, Berthold"},{"first_name":"Meritxell","full_name":"Huch, Meritxell","last_name":"Huch"},{"full_name":"Philpott, Anna","first_name":"Anna","last_name":"Philpott"},{"full_name":"Simons, Benjamin","first_name":"Benjamin","last_name":"Simons"}],"issue":"3","intvolume":" 46","has_accepted_license":"1","status":"public","ddc":["570"],"isi":1,"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"oa":1,"file":[{"access_level":"open_access","checksum":"78d2062b9e3c3b90fe71545aeb6d2f65","date_created":"2018-12-17T10:49:49Z","file_id":"5694","content_type":"application/pdf","date_updated":"2020-07-14T12:44:43Z","file_size":8948384,"creator":"dernst","relation":"main_file","file_name":"2018_DevelopmentalCell_Sznurkowska.pdf"}],"publisher":"Cell Press","publication":"Developmental Cell","date_published":"2018-08-06T00:00:00Z","day":"06","type":"journal_article","month":"08","department":[{"_id":"EdHa"}],"year":"2018","scopus_import":"1","date_updated":"2023-09-11T12:52:41Z","abstract":[{"text":"Pancreas development involves a coordinated process in which an early phase of cell segregation is followed by a longer phase of lineage restriction, expansion, and tissue remodeling. By combining clonal tracing and whole-mount reconstruction with proliferation kinetics and single-cell transcriptional profiling, we define the functional basis of pancreas morphogenesis. We show that the large-scale organization of mouse pancreas can be traced to the activity of self-renewing precursors positioned at the termini of growing ducts, which act collectively to drive serial rounds of stochastic ductal bifurcation balanced by termination. During this phase of branching morphogenesis, multipotent precursors become progressively fate-restricted, giving rise to self-renewing acinar-committed precursors that are conveyed with growing ducts, as well as ductal progenitors that expand the trailing ducts and give rise to delaminating endocrine cells. These findings define quantitatively how the functional behavior and lineage progression of precursor pools determine the large-scale patterning of pancreatic sub-compartments.","lang":"eng"}],"publist_id":"7791","citation":{"ama":"Sznurkowska M, Hannezo EB, Azzarelli R, et al. Defining lineage potential and fate behavior of precursors during pancreas development. Developmental Cell. 2018;46(3):360-375. doi:10.1016/j.devcel.2018.06.028","ieee":"M. Sznurkowska et al., “Defining lineage potential and fate behavior of precursors during pancreas development,” Developmental Cell, vol. 46, no. 3. Cell Press, pp. 360–375, 2018.","short":"M. Sznurkowska, E.B. Hannezo, R. Azzarelli, S. Rulands, S. Nestorowa, C. Hindley, J. Nichols, B. Göttgens, M. Huch, A. Philpott, B. Simons, Developmental Cell 46 (2018) 360–375.","chicago":"Sznurkowska, Magdalena, Edouard B Hannezo, Roberta Azzarelli, Steffen Rulands, Sonia Nestorowa, Christopher Hindley, Jennifer Nichols, et al. “Defining Lineage Potential and Fate Behavior of Precursors during Pancreas Development.” Developmental Cell. Cell Press, 2018. https://doi.org/10.1016/j.devcel.2018.06.028.","ista":"Sznurkowska M, Hannezo EB, Azzarelli R, Rulands S, Nestorowa S, Hindley C, Nichols J, Göttgens B, Huch M, Philpott A, Simons B. 2018. Defining lineage potential and fate behavior of precursors during pancreas development. Developmental Cell. 46(3), 360–375.","mla":"Sznurkowska, Magdalena, et al. “Defining Lineage Potential and Fate Behavior of Precursors during Pancreas Development.” Developmental Cell, vol. 46, no. 3, Cell Press, 2018, pp. 360–75, doi:10.1016/j.devcel.2018.06.028.","apa":"Sznurkowska, M., Hannezo, E. B., Azzarelli, R., Rulands, S., Nestorowa, S., Hindley, C., … Simons, B. (2018). Defining lineage potential and fate behavior of precursors during pancreas development. Developmental Cell. Cell Press. https://doi.org/10.1016/j.devcel.2018.06.028"},"_id":"132","article_processing_charge":"No","doi":"10.1016/j.devcel.2018.06.028","acknowledgement":"E.H. is funded by a Junior Research Fellowship from Trinity College, Cam-bridge, a Sir Henry Wellcome Fellowship from the Wellcome Trust, and theBettencourt-Schueller Young Researcher Prize for support.","external_id":{"isi":["000441327300012"]},"date_created":"2018-12-11T11:44:48Z","article_type":"original"},{"author":[{"full_name":"Kretschmer, Silvan","first_name":"Silvan","last_name":"Kretschmer"},{"full_name":"Maslov, Mikhail","first_name":"Mikhail","id":"2E65BB0E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-4074-2570","last_name":"Maslov"},{"last_name":"Ghaderzadeh","full_name":"Ghaderzadeh, Sadegh","first_name":"Sadegh"},{"first_name":"Mahdi","full_name":"Ghorbani-Asl, Mahdi","last_name":"Ghorbani-Asl"},{"full_name":"Hlawacek, Gregor","first_name":"Gregor","last_name":"Hlawacek"},{"first_name":"Arkady V.","full_name":"Krasheninnikov, Arkady V.","last_name":"Krasheninnikov"}],"intvolume":" 10","issue":"36","status":"public","pmid":1,"quality_controlled":"1","publication_status":"published","page":"30827-30836","language":[{"iso":"eng"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","keyword":["General Materials Science"],"title":"Supported two-dimensional materials under ion irradiation: The substrate governs defect production","volume":10,"oa_version":"None","date_updated":"2023-08-01T07:18:30Z","abstract":[{"lang":"eng","text":"Focused ion beams perfectly suit for patterning two-dimensional (2D) materials, but the optimization of irradiation parameters requires full microscopic understanding of defect production mechanisms. In contrast to freestanding 2D systems, the details of damage creation in supported 2D materials are not fully understood, whereas the majority of experiments have been carried out for 2D targets deposited on substrates. Here, we suggest a universal and computationally efficient scheme to model the irradiation of supported 2D materials, which combines analytical potential molecular dynamics with Monte Carlo simulations and makes it possible to independently assess the contributions to the damage from backscattered ions and atoms sputtered from the substrate. Using the scheme, we study the defect production in graphene and MoS2 sheets, which are the two most important and wide-spread 2D materials, deposited on a SiO2 substrate. For helium and neon ions with a wide range of initial ion energies including those used in a commercial helium ion microscope (HIM), we demonstrate that depending on the ion energy and mass, the defect production in 2D systems can be dominated by backscattered ions and sputtered substrate atoms rather than by the direct ion impacts and that the amount of damage in 2D materials heavily depends on whether a substrate is present or not. We also study the factors which limit the spatial resolution of the patterning process. Our results, which agree well with the available experimental data, provide not only insights into defect production but also quantitative information, which can be used for the minimization of damage during imaging in HIM or optimization of the patterning process."}],"_id":"13255","citation":{"chicago":"Kretschmer, Silvan, Mikhail Maslov, Sadegh Ghaderzadeh, Mahdi Ghorbani-Asl, Gregor Hlawacek, and Arkady V. Krasheninnikov. “Supported Two-Dimensional Materials under Ion Irradiation: The Substrate Governs Defect Production.” ACS Applied Materials & Interfaces. American Chemical Society, 2018. https://doi.org/10.1021/acsami.8b08471.","ama":"Kretschmer S, Maslov M, Ghaderzadeh S, Ghorbani-Asl M, Hlawacek G, Krasheninnikov AV. Supported two-dimensional materials under ion irradiation: The substrate governs defect production. ACS Applied Materials & Interfaces. 2018;10(36):30827-30836. doi:10.1021/acsami.8b08471","ieee":"S. Kretschmer, M. Maslov, S. Ghaderzadeh, M. Ghorbani-Asl, G. Hlawacek, and A. V. Krasheninnikov, “Supported two-dimensional materials under ion irradiation: The substrate governs defect production,” ACS Applied Materials & Interfaces, vol. 10, no. 36. American Chemical Society, pp. 30827–30836, 2018.","short":"S. Kretschmer, M. Maslov, S. Ghaderzadeh, M. Ghorbani-Asl, G. Hlawacek, A.V. Krasheninnikov, ACS Applied Materials & Interfaces 10 (2018) 30827–30836.","ista":"Kretschmer S, Maslov M, Ghaderzadeh S, Ghorbani-Asl M, Hlawacek G, Krasheninnikov AV. 2018. Supported two-dimensional materials under ion irradiation: The substrate governs defect production. ACS Applied Materials & Interfaces. 10(36), 30827–30836.","mla":"Kretschmer, Silvan, et al. “Supported Two-Dimensional Materials under Ion Irradiation: The Substrate Governs Defect Production.” ACS Applied Materials & Interfaces, vol. 10, no. 36, American Chemical Society, 2018, pp. 30827–36, doi:10.1021/acsami.8b08471.","apa":"Kretschmer, S., Maslov, M., Ghaderzadeh, S., Ghorbani-Asl, M., Hlawacek, G., & Krasheninnikov, A. V. (2018). Supported two-dimensional materials under ion irradiation: The substrate governs defect production. ACS Applied Materials & Interfaces. American Chemical Society. https://doi.org/10.1021/acsami.8b08471"},"article_processing_charge":"No","doi":"10.1021/acsami.8b08471","article_type":"original","external_id":{"pmid":["30117320"]},"date_created":"2023-07-21T11:43:00Z","publication":"ACS Applied Materials & Interfaces","publisher":"American Chemical Society","date_published":"2018-08-17T00:00:00Z","extern":"1","day":"17","publication_identifier":{"issn":["1944-8244","1944-8252"]},"type":"journal_article","year":"2018","month":"08"},{"publication_status":"published","file_date_updated":"2020-07-14T12:44:44Z","quality_controlled":"1","volume":118,"oa_version":"Published Version","language":[{"iso":"eng"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"Synchronizing the asynchronous","intvolume":" 118","has_accepted_license":"1","author":[{"orcid":"0000-0001-7745-9117","last_name":"Kragl","id":"320FC952-F248-11E8-B48F-1D18A9856A87","first_name":"Bernhard","full_name":"Kragl, Bernhard"},{"full_name":"Qadeer, Shaz","first_name":"Shaz","last_name":"Qadeer"},{"first_name":"Thomas A","full_name":"Henzinger, Thomas A","orcid":"0000−0002−2985−7724","last_name":"Henzinger","id":"40876CD8-F248-11E8-B48F-1D18A9856A87"}],"oa":1,"status":"public","ddc":["000"],"OA_place":"publisher","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"pubrep_id":"1039","extern":"1","day":"13","alternative_title":["LIPIcs"],"publisher":"Schloss Dagstuhl - Leibniz-Zentrum für Informatik","file":[{"file_name":"IST-2018-853-v2+2_concur2018.pdf","creator":"system","relation":"main_file","date_updated":"2020-07-14T12:44:44Z","file_size":745438,"content_type":"application/pdf","file_id":"5368","date_created":"2018-12-12T10:18:46Z","checksum":"c90895f4c5fafc18ddc54d1c8848077e","access_level":"open_access"}],"article_number":"21","project":[{"name":"Rigorous Systems Engineering","_id":"25F2ACDE-B435-11E9-9278-68D0E5697425","call_identifier":"FWF","grant_number":"S11402-N23"},{"name":"Moderne Concurrency Paradigms","_id":"25F5A88A-B435-11E9-9278-68D0E5697425","call_identifier":"FWF","grant_number":"S11402-N23"}],"date_published":"2018-08-13T00:00:00Z","year":"2018","department":[{"_id":"ToHe"}],"month":"08","publication_identifier":{"issn":["1868-8969"]},"OA_type":"gold","type":"conference","publist_id":"7790","abstract":[{"text":"Synchronous programs are easy to specify because the side effects of an operation are finished by the time the invocation of the operation returns to the caller. Asynchronous programs, on the other hand, are difficult to specify because there are side effects due to pending computation scheduled as a result of the invocation of an operation. They are also difficult to verify because of the large number of possible interleavings of concurrent computation threads. We present synchronization, a new proof rule that simplifies the verification of asynchronous programs by introducing the fiction, for proof purposes, that asynchronous operations complete synchronously. Synchronization summarizes an asynchronous computation as immediate atomic effect. Modular verification is enabled via pending asynchronous calls in atomic summaries, and a complementary proof rule that eliminates pending asynchronous calls when components and their specifications are composed. We evaluate synchronization in the context of a multi-layer refinement verification methodology on a collection of benchmark programs.","lang":"eng"}],"scopus_import":"1","related_material":{"record":[{"status":"public","relation":"earlier_version","id":"6426"},{"id":"8332","relation":"dissertation_contains","status":"public"}]},"date_updated":"2026-04-08T07:23:52Z","conference":{"start_date":"2018-09-04","location":"Beijing, China","end_date":"2018-09-07","name":"CONCUR: International Conference on Concurrency Theory"},"doi":"10.4230/LIPIcs.CONCUR.2018.21","date_created":"2018-12-11T11:44:48Z","_id":"133","citation":{"apa":"Kragl, B., Qadeer, S., & Henzinger, T. A. (2018). Synchronizing the asynchronous (Vol. 118). Presented at the CONCUR: International Conference on Concurrency Theory, Beijing, China: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. https://doi.org/10.4230/LIPIcs.CONCUR.2018.21","ama":"Kragl B, Qadeer S, Henzinger TA. Synchronizing the asynchronous. In: Vol 118. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2018. doi:10.4230/LIPIcs.CONCUR.2018.21","chicago":"Kragl, Bernhard, Shaz Qadeer, and Thomas A Henzinger. “Synchronizing the Asynchronous,” Vol. 118. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2018. https://doi.org/10.4230/LIPIcs.CONCUR.2018.21.","ieee":"B. Kragl, S. Qadeer, and T. A. Henzinger, “Synchronizing the asynchronous,” presented at the CONCUR: International Conference on Concurrency Theory, Beijing, China, 2018, vol. 118.","short":"B. Kragl, S. Qadeer, T.A. Henzinger, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2018.","ista":"Kragl B, Qadeer S, Henzinger TA. 2018. Synchronizing the asynchronous. CONCUR: International Conference on Concurrency Theory, LIPIcs, vol. 118, 21.","mla":"Kragl, Bernhard, et al. Synchronizing the Asynchronous. Vol. 118, 21, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2018, doi:10.4230/LIPIcs.CONCUR.2018.21."},"article_processing_charge":"No"},{"day":"27","extern":"1","date_published":"2018-12-27T00:00:00Z","publication":"Nucleosides, Nucleotides & Nucleic Acids","publisher":"Informa UK Limited","year":"2018","month":"12","publication_identifier":{"eissn":["1532-2335"],"issn":["1525-7770"]},"OA_type":"closed access","type":"journal_article","abstract":[{"text":"The X-ray crystal structures of a decamer sequence d(CGCGTACGCG)2 and a tetradecamer sequence d(CGCGCGTACGCGCG)2 are presented here. Both sequences are alternating pyrimidine-purine repeat sequences and they form disordered, pseudo-continuous left handed Z-type helices. They demonstrate interesting variants of the ‘bundles of columns of helices’ mode of packing.","lang":"eng"}],"date_updated":"2026-02-20T08:27:39Z","article_type":"original","external_id":{"pmid":["30588873"]},"date_created":"2026-01-29T21:15:08Z","doi":"10.1080/15257770.2018.1517883","article_processing_charge":"No","_id":"21094","citation":{"apa":"Karthik, S., Mandal, P. K., Thirugnanasambandam, A., & Gautham, N. (2018). Crystal structures of disordered Z-type helices. Nucleosides, Nucleotides & Nucleic Acids. Informa UK Limited. https://doi.org/10.1080/15257770.2018.1517883","ista":"Karthik S, Mandal PK, Thirugnanasambandam A, Gautham N. 2018. Crystal structures of disordered Z-type helices. Nucleosides, Nucleotides & Nucleic Acids. 38(4), 279–293.","mla":"Karthik, S., et al. “Crystal Structures of Disordered Z-Type Helices.” Nucleosides, Nucleotides & Nucleic Acids, vol. 38, no. 4, Informa UK Limited, 2018, pp. 279–93, doi:10.1080/15257770.2018.1517883.","ieee":"S. Karthik, P. K. Mandal, A. Thirugnanasambandam, and N. Gautham, “Crystal structures of disordered Z-type helices,” Nucleosides, Nucleotides & Nucleic Acids, vol. 38, no. 4. Informa UK Limited, pp. 279–293, 2018.","chicago":"Karthik, S., Pradeep K Mandal, A. Thirugnanasambandam, and N. Gautham. “Crystal Structures of Disordered Z-Type Helices.” Nucleosides, Nucleotides & Nucleic Acids. Informa UK Limited, 2018. https://doi.org/10.1080/15257770.2018.1517883.","ama":"Karthik S, Mandal PK, Thirugnanasambandam A, Gautham N. Crystal structures of disordered Z-type helices. Nucleosides, Nucleotides & Nucleic Acids. 2018;38(4):279-293. doi:10.1080/15257770.2018.1517883","short":"S. Karthik, P.K. Mandal, A. Thirugnanasambandam, N. Gautham, Nucleosides, Nucleotides & Nucleic Acids 38 (2018) 279–293."},"publication_status":"published","quality_controlled":"1","oa_version":"None","volume":38,"title":"Crystal structures of disordered Z-type helices","page":"279-293","language":[{"iso":"eng"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","has_accepted_license":"1","issue":"4","intvolume":" 38","author":[{"first_name":"S.","full_name":"Karthik, S.","last_name":"Karthik"},{"id":"6a3def15-d4b4-11ef-9fa9-a24c1f545ec3","orcid":"0000-0001-5996-956X","last_name":"Mandal","full_name":"Mandal, Pradeep K","first_name":"Pradeep K"},{"last_name":"Thirugnanasambandam","first_name":"A.","full_name":"Thirugnanasambandam, A."},{"full_name":"Gautham, N.","first_name":"N.","last_name":"Gautham"}],"pmid":1,"status":"public"},{"has_accepted_license":"1","issue":"1","intvolume":" 10","author":[{"first_name":"Emeric","full_name":"Jeamet, Emeric","last_name":"Jeamet"},{"last_name":"Septavaux","full_name":"Septavaux, Jean","first_name":"Jean"},{"last_name":"Héloin","full_name":"Héloin, Alexandre","first_name":"Alexandre"},{"first_name":"Marion","full_name":"Donnier-Maréchal, Marion","last_name":"Donnier-Maréchal"},{"last_name":"Dumartin","first_name":"Melissa","full_name":"Dumartin, Melissa"},{"last_name":"Ourri","full_name":"Ourri, Benjamin","first_name":"Benjamin"},{"last_name":"Mandal","orcid":"0000-0001-5996-956X","id":"6a3def15-d4b4-11ef-9fa9-a24c1f545ec3","first_name":"Pradeep K","full_name":"Mandal, Pradeep K"},{"last_name":"Huc","full_name":"Huc, Ivan","first_name":"Ivan"},{"first_name":"Emmanuelle","full_name":"Bignon, Emmanuelle","last_name":"Bignon"},{"first_name":"Elise","full_name":"Dumont, Elise","last_name":"Dumont"},{"first_name":"Christophe","full_name":"Morell, Christophe","last_name":"Morell"},{"first_name":"Jean-Patrick","full_name":"Francoia, Jean-Patrick","last_name":"Francoia"},{"last_name":"Perret","full_name":"Perret, Florent","first_name":"Florent"},{"last_name":"Vial","full_name":"Vial, Laurent","first_name":"Laurent"},{"last_name":"Leclaire","full_name":"Leclaire, Julien","first_name":"Julien"}],"oa":1,"OA_place":"publisher","tmp":{"name":"Creative Commons Attribution-NonCommercial 3.0 Unported (CC BY-NC 3.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc/3.0/legalcode","short":"CC BY-NC (3.0)","image":"/images/cc_by_nc.png"},"status":"public","publication_status":"published","quality_controlled":"1","oa_version":"Published Version","DOAJ_listed":"1","volume":10,"title":"Wetting the lock and key enthalpically favours polyelectrolyte binding","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","page":"277-283","language":[{"iso":"eng"}],"abstract":[{"text":"By using a combination of readily accessible experimental and computational experiments in water, we explored the factors governing the association between polyanionic dyn[4]arene and a series of α,ω-alkyldiammonium ions of increasing chain length. We found that the lock-and-key concept based on the best match between the apolar and polar regions of the molecular partners failed to explain the observed selectivities. Instead, the dissection of the energetic and structural contributions demonstrated that the binding events were actually guided by two crucial solvent-related phenomena as the chain length of the guest increases: the expected decrease of the enthalpic cost of guest desolvation and the unexpected increase of the favourable enthalpy of complex solvation. By bringing to light the decisive enthalpic impact of complex solvation during the binding of polyelectrolytes by inclusion, this study may provide a missing piece to a puzzle that one day could display the global picture of molecular recognition in water.","lang":"eng"}],"date_updated":"2026-02-23T10:00:16Z","date_created":"2026-01-29T21:20:24Z","article_type":"original","doi":"10.1039/c8sc02966k","article_processing_charge":"No","citation":{"apa":"Jeamet, E., Septavaux, J., Héloin, A., Donnier-Maréchal, M., Dumartin, M., Ourri, B., … Leclaire, J. (2018). Wetting the lock and key enthalpically favours polyelectrolyte binding. Chemical Science. Royal Society of Chemistry. https://doi.org/10.1039/c8sc02966k","short":"E. Jeamet, J. Septavaux, A. Héloin, M. Donnier-Maréchal, M. Dumartin, B. Ourri, P.K. Mandal, I. Huc, E. Bignon, E. Dumont, C. Morell, J.-P. Francoia, F. Perret, L. Vial, J. Leclaire, Chemical Science 10 (2018) 277–283.","chicago":"Jeamet, Emeric, Jean Septavaux, Alexandre Héloin, Marion Donnier-Maréchal, Melissa Dumartin, Benjamin Ourri, Pradeep K Mandal, et al. “Wetting the Lock and Key Enthalpically Favours Polyelectrolyte Binding.” Chemical Science. Royal Society of Chemistry, 2018. https://doi.org/10.1039/c8sc02966k.","ieee":"E. Jeamet et al., “Wetting the lock and key enthalpically favours polyelectrolyte binding,” Chemical Science, vol. 10, no. 1. Royal Society of Chemistry, pp. 277–283, 2018.","ama":"Jeamet E, Septavaux J, Héloin A, et al. Wetting the lock and key enthalpically favours polyelectrolyte binding. Chemical Science. 2018;10(1):277-283. doi:10.1039/c8sc02966k","mla":"Jeamet, Emeric, et al. “Wetting the Lock and Key Enthalpically Favours Polyelectrolyte Binding.” Chemical Science, vol. 10, no. 1, Royal Society of Chemistry, 2018, pp. 277–83, doi:10.1039/c8sc02966k.","ista":"Jeamet E, Septavaux J, Héloin A, Donnier-Maréchal M, Dumartin M, Ourri B, Mandal PK, Huc I, Bignon E, Dumont E, Morell C, Francoia J-P, Perret F, Vial L, Leclaire J. 2018. Wetting the lock and key enthalpically favours polyelectrolyte binding. Chemical Science. 10(1), 277–283."},"main_file_link":[{"url":"https://doi.org/10.1039/C8SC02966K","open_access":"1"}],"_id":"21096","day":"08","extern":"1","date_published":"2018-10-08T00:00:00Z","publisher":"Royal Society of Chemistry","license":"https://creativecommons.org/licenses/by-nc/3.0/","publication":"Chemical Science","month":"10","year":"2018","type":"journal_article","OA_type":"gold","publication_identifier":{"eissn":["2041-6539"],"issn":["2041-6520"]}},{"publication_status":"published","quality_controlled":"1","volume":10,"oa_version":"None","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","page":"405-412","language":[{"iso":"eng"}],"title":"Ribosomal synthesis and folding of peptide-helical aromatic foldamer hybrids","intvolume":" 10","issue":"4","has_accepted_license":"1","author":[{"last_name":"Rogers","first_name":"Joseph M.","full_name":"Rogers, Joseph M."},{"full_name":"Kwon, Sunbum","first_name":"Sunbum","last_name":"Kwon"},{"last_name":"Dawson","first_name":"Simon J.","full_name":"Dawson, Simon J."},{"id":"6a3def15-d4b4-11ef-9fa9-a24c1f545ec3","last_name":"Mandal","orcid":"0000-0001-5996-956X","full_name":"Mandal, Pradeep K","first_name":"Pradeep K"},{"full_name":"Suga, Hiroaki","first_name":"Hiroaki","last_name":"Suga"},{"last_name":"Huc","first_name":"Ivan","full_name":"Huc, Ivan"}],"pmid":1,"status":"public","extern":"1","day":"19","publisher":"Springer Nature","publication":"Nature Chemistry","date_published":"2018-03-19T00:00:00Z","month":"03","year":"2018","OA_type":"closed access","type":"journal_article","publication_identifier":{"eissn":["1755-4349"],"issn":["1755-4330"]},"abstract":[{"text":"Translation, the mRNA-templated synthesis of peptides by the ribosome, can be manipulated to incorporate variants of the 20 cognate amino acids. Such approaches for expanding the range of chemical entities that can be produced by the ribosome may accelerate the discovery of molecules that can perform functions for which poorly folded, short peptidic sequences are ill suited. Here, we show that the ribosome tolerates some artificial helical aromatic oligomers, so-called foldamers. Using a flexible tRNA-acylation ribozyme—flexizyme—foldamers were attached to tRNA, and the resulting acylated tRNAs were delivered to the ribosome to initiate the synthesis of non-cyclic and cyclic foldamer–peptide hybrid molecules. Passing through the ribosome exit tunnel requires the foldamers to unfold. Yet foldamers encode sufficient folding information to influence the peptide structure once translation is completed. We also show that in cyclic hybrids, the foldamer portion can fold into a helix and force the peptide segment to adopt a constrained and stretched conformation.","lang":"eng"}],"related_material":{"link":[{"url":"https://doi.org/10.1038/s41557-018-0086-8","relation":"erratum"}]},"date_updated":"2026-02-20T08:58:10Z","doi":"10.1038/s41557-018-0007-x","date_created":"2026-01-29T21:27:38Z","external_id":{"pmid":["29556052"]},"article_type":"original","citation":{"mla":"Rogers, Joseph M., et al. “Ribosomal Synthesis and Folding of Peptide-Helical Aromatic Foldamer Hybrids.” Nature Chemistry, vol. 10, no. 4, Springer Nature, 2018, pp. 405–12, doi:10.1038/s41557-018-0007-x.","ista":"Rogers JM, Kwon S, Dawson SJ, Mandal PK, Suga H, Huc I. 2018. Ribosomal synthesis and folding of peptide-helical aromatic foldamer hybrids. Nature Chemistry. 10(4), 405–412.","ieee":"J. M. Rogers, S. Kwon, S. J. Dawson, P. K. Mandal, H. Suga, and I. Huc, “Ribosomal synthesis and folding of peptide-helical aromatic foldamer hybrids,” Nature Chemistry, vol. 10, no. 4. Springer Nature, pp. 405–412, 2018.","chicago":"Rogers, Joseph M., Sunbum Kwon, Simon J. Dawson, Pradeep K Mandal, Hiroaki Suga, and Ivan Huc. “Ribosomal Synthesis and Folding of Peptide-Helical Aromatic Foldamer Hybrids.” Nature Chemistry. Springer Nature, 2018. https://doi.org/10.1038/s41557-018-0007-x.","ama":"Rogers JM, Kwon S, Dawson SJ, Mandal PK, Suga H, Huc I. Ribosomal synthesis and folding of peptide-helical aromatic foldamer hybrids. Nature Chemistry. 2018;10(4):405-412. doi:10.1038/s41557-018-0007-x","short":"J.M. Rogers, S. Kwon, S.J. Dawson, P.K. Mandal, H. Suga, I. Huc, Nature Chemistry 10 (2018) 405–412.","apa":"Rogers, J. M., Kwon, S., Dawson, S. J., Mandal, P. K., Suga, H., & Huc, I. (2018). Ribosomal synthesis and folding of peptide-helical aromatic foldamer hybrids. Nature Chemistry. Springer Nature. https://doi.org/10.1038/s41557-018-0007-x"},"_id":"21097","article_processing_charge":"No"},{"article_type":"original","external_id":{"pmid":["30120882"]},"date_created":"2026-02-06T12:12:20Z","doi":"10.1002/iub.1924","article_processing_charge":"No","_id":"21152","citation":{"apa":"Dileep, K. V., Remya, C., Tintu, I., Mandal, P. K., Karthe, P., Haridas, M., & Sadasivan, C. (2018). Crystal structure of phospholipase A2 in complex with 1‐naphthaleneacetic acid. IUBMB Life. Wiley. https://doi.org/10.1002/iub.1924","mla":"Dileep, Kalarickal V., et al. “Crystal Structure of Phospholipase A2 in Complex with 1‐naphthaleneacetic Acid.” IUBMB Life, vol. 70, no. 10, Wiley, 2018, pp. 995–1001, doi:10.1002/iub.1924.","ista":"Dileep KV, Remya C, Tintu I, Mandal PK, Karthe P, Haridas M, Sadasivan C. 2018. Crystal structure of phospholipase A2 in complex with 1‐naphthaleneacetic acid. IUBMB Life. 70(10), 995–1001.","ama":"Dileep KV, Remya C, Tintu I, et al. Crystal structure of phospholipase A2 in complex with 1‐naphthaleneacetic acid. IUBMB Life. 2018;70(10):995-1001. doi:10.1002/iub.1924","short":"K.V. Dileep, C. Remya, I. Tintu, P.K. Mandal, P. Karthe, M. Haridas, C. Sadasivan, IUBMB Life 70 (2018) 995–1001.","chicago":"Dileep, Kalarickal V., Chandran Remya, Ignatius Tintu, Pradeep K Mandal, Ponnuraj Karthe, Madathilkovilakathu Haridas, and Chittalakkottu Sadasivan. “Crystal Structure of Phospholipase A2 in Complex with 1‐naphthaleneacetic Acid.” IUBMB Life. Wiley, 2018. https://doi.org/10.1002/iub.1924.","ieee":"K. V. Dileep et al., “Crystal structure of phospholipase A2 in complex with 1‐naphthaleneacetic acid,” IUBMB Life, vol. 70, no. 10. Wiley, pp. 995–1001, 2018."},"abstract":[{"lang":"eng","text":"Phospholipase A2 (PLA2) is one of the rate limiting enzymes involved in the production of arachidonic acid, a potent inflammatory mediator. PLA2 is widely distributed all over the animal kingdom. It is also seen in inflammatory exudation and venoms of different organisms. The studies demonstrated that PLA2 inhibitors have broad spectrum activities that they can either be used against inflammation or envenomation. In this study, the inhibitory activity of 1-napthaleneacetic acid (NAA) against porcine pancreatic PLA2 has been explained through isothermal titration calorimetry and enzyme kinetics studies. The atomic level of interactions of NAA with PLA2 was also studied using X-ray crystallography. Apart from these findings, the theoretical binding affinities and mode of interactions of two naphthalene-based NSAIDs such as naproxen (NAP) and nabumetone (NAB) were studied through molecular modeling. The studies proved that the selected ligands are binding at the doorway of the active site cleft and hindering the substrate entry to the active site. The study brings out a potential scaffold for the designing of broad spectrum PLA2 inhibitors which can be used for inflammation or envenomation. "}],"date_updated":"2026-02-20T08:09:53Z","year":"2018","month":"10","publication_identifier":{"eissn":["1521-6551"],"issn":["1521-6543"]},"type":"journal_article","OA_type":"closed access","day":"01","extern":"1","date_published":"2018-10-01T00:00:00Z","publication":"IUBMB Life","publisher":"Wiley","pmid":1,"status":"public","has_accepted_license":"1","issue":"10","intvolume":" 70","author":[{"last_name":"Dileep","full_name":"Dileep, Kalarickal V.","first_name":"Kalarickal V."},{"last_name":"Remya","first_name":"Chandran","full_name":"Remya, Chandran"},{"full_name":"Tintu, Ignatius","first_name":"Ignatius","last_name":"Tintu"},{"first_name":"Pradeep K","full_name":"Mandal, Pradeep K","last_name":"Mandal","orcid":"0000-0001-5996-956X","id":"6a3def15-d4b4-11ef-9fa9-a24c1f545ec3"},{"last_name":"Karthe","full_name":"Karthe, Ponnuraj","first_name":"Ponnuraj"},{"last_name":"Haridas","full_name":"Haridas, Madathilkovilakathu","first_name":"Madathilkovilakathu"},{"first_name":"Chittalakkottu","full_name":"Sadasivan, Chittalakkottu","last_name":"Sadasivan"}],"oa_version":"None","volume":70,"title":"Crystal structure of phospholipase A2 in complex with 1‐naphthaleneacetic acid","language":[{"iso":"eng"}],"page":"995-1001","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","quality_controlled":"1"},{"quality_controlled":"1","publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","keyword":["Metasurface","dispersion engineering","visible spectrum","titanium dioxide","orbital angular momentum states","achromatic metalens"],"language":[{"iso":"eng"}],"page":"2420-2427","title":"Single-layer metasurface with controllable multiwavelength functions","volume":18,"oa_version":"None","author":[{"last_name":"Shi","first_name":"Zhujun","full_name":"Shi, Zhujun"},{"last_name":"Khorasaninejad","first_name":"Mohammadreza","full_name":"Khorasaninejad, Mohammadreza"},{"full_name":"Huang, Yao-Wei","first_name":"Yao-Wei","last_name":"Huang"},{"first_name":"Charles","full_name":"Roques-Carmes, Charles","last_name":"Roques-Carmes","id":"e2e68fc9-6505-11ef-a541-eb4e72cc3e82"},{"full_name":"Zhu, Alexander Y.","first_name":"Alexander Y.","last_name":"Zhu"},{"last_name":"Chen","full_name":"Chen, Wei Ting","first_name":"Wei Ting"},{"first_name":"Vyshakh","full_name":"Sanjeev, Vyshakh","last_name":"Sanjeev"},{"full_name":"Ding, Zhao-Wei","first_name":"Zhao-Wei","last_name":"Ding"},{"full_name":"Tamagnone, Michele","first_name":"Michele","last_name":"Tamagnone"},{"first_name":"Kundan","full_name":"Chaudhary, Kundan","last_name":"Chaudhary"},{"full_name":"Devlin, Robert C.","first_name":"Robert C.","last_name":"Devlin"},{"full_name":"Qiu, Cheng-Wei","first_name":"Cheng-Wei","last_name":"Qiu"},{"full_name":"Capasso, Federico","first_name":"Federico","last_name":"Capasso"}],"intvolume":" 18","issue":"4","status":"public","pmid":1,"publisher":"American Chemical Society ","publication":"Nano Letters","date_published":"2018-02-20T00:00:00Z","extern":"1","day":"20","type":"journal_article","OA_type":"closed access","publication_identifier":{"eissn":["1530-6992"],"issn":["1530-6984"]},"month":"02","year":"2018","scopus_import":"1","date_updated":"2026-04-15T07:52:46Z","abstract":[{"text":"In this paper, we report dispersion-engineered metasurfaces with distinct functionalities controlled by wavelength. Unlike previous approaches based on spatial multiplexing or vertical stacking of metasurfaces, we utilize a single phase profile with wavelength dependence encoded in the phase shifters’ dispersion. We designed and fabricated a multiwavelength achromatic metalens (MAM) with achromatic focusing for blue (B), green (G), yellow (Y), and red (R) light and two wavelength-controlled beam generators (WCBG): one focuses light with orbital angular momentum (OAM) states (l = 0,1,2) corresponding to three primary colors; the other produces ordinary focal spots (l = 0) for red and green light, while generating a vortex beam (l = 1) in the blue. A full color (RGB) hologram is also demonstrated in simulation. Our approach opens a path to applications ranging from near-eye displays and holography to compact multiwavelength beam generation.","lang":"eng"}],"citation":{"ama":"Shi Z, Khorasaninejad M, Huang Y-W, et al. Single-layer metasurface with controllable multiwavelength functions. Nano Letters. 2018;18(4):2420-2427. doi:10.1021/acs.nanolett.7b05458","short":"Z. Shi, M. Khorasaninejad, Y.-W. Huang, C. Roques-Carmes, A.Y. Zhu, W.T. Chen, V. Sanjeev, Z.-W. Ding, M. Tamagnone, K. Chaudhary, R.C. Devlin, C.-W. Qiu, F. Capasso, Nano Letters 18 (2018) 2420–2427.","ieee":"Z. Shi et al., “Single-layer metasurface with controllable multiwavelength functions,” Nano Letters, vol. 18, no. 4. American Chemical Society , pp. 2420–2427, 2018.","chicago":"Shi, Zhujun, Mohammadreza Khorasaninejad, Yao-Wei Huang, Charles Roques-Carmes, Alexander Y. Zhu, Wei Ting Chen, Vyshakh Sanjeev, et al. “Single-Layer Metasurface with Controllable Multiwavelength Functions.” Nano Letters. American Chemical Society , 2018. https://doi.org/10.1021/acs.nanolett.7b05458.","mla":"Shi, Zhujun, et al. “Single-Layer Metasurface with Controllable Multiwavelength Functions.” Nano Letters, vol. 18, no. 4, American Chemical Society , 2018, pp. 2420–27, doi:10.1021/acs.nanolett.7b05458.","ista":"Shi Z, Khorasaninejad M, Huang Y-W, Roques-Carmes C, Zhu AY, Chen WT, Sanjeev V, Ding Z-W, Tamagnone M, Chaudhary K, Devlin RC, Qiu C-W, Capasso F. 2018. Single-layer metasurface with controllable multiwavelength functions. Nano Letters. 18(4), 2420–2427.","apa":"Shi, Z., Khorasaninejad, M., Huang, Y.-W., Roques-Carmes, C., Zhu, A. Y., Chen, W. T., … Capasso, F. (2018). Single-layer metasurface with controllable multiwavelength functions. Nano Letters. American Chemical Society . https://doi.org/10.1021/acs.nanolett.7b05458"},"_id":"21523","article_processing_charge":"No","doi":"10.1021/acs.nanolett.7b05458","external_id":{"pmid":["29461838"]},"date_created":"2026-03-30T12:22:47Z","article_type":"letter_note"},{"volume":5,"oa_version":"Preprint","language":[{"iso":"eng"}],"page":"3513-3518","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","keyword":["light−matter interactions","periodic structures","nanophotonics","free-electron light sources"],"arxiv":1,"title":"Smith–Purcell radiation from low-energy electrons","publication_status":"published","quality_controlled":"1","oa":1,"ddc":["530"],"status":"public","OA_place":"repository","intvolume":" 5","issue":"9","author":[{"first_name":"Aviram","full_name":"Massuda, Aviram","last_name":"Massuda"},{"first_name":"Charles","full_name":"Roques-Carmes, Charles","last_name":"Roques-Carmes","id":"e2e68fc9-6505-11ef-a541-eb4e72cc3e82"},{"full_name":"Yang, Yujia","first_name":"Yujia","last_name":"Yang"},{"full_name":"Kooi, Steven E.","first_name":"Steven E.","last_name":"Kooi"},{"full_name":"Yang, Yi","first_name":"Yi","last_name":"Yang"},{"last_name":"Murdia","first_name":"Chitraang","full_name":"Murdia, Chitraang"},{"last_name":"Berggren","full_name":"Berggren, Karl K.","first_name":"Karl K."},{"first_name":"Ido","full_name":"Kaminer, Ido","last_name":"Kaminer"},{"first_name":"Marin","full_name":"Soljačić, Marin","last_name":"Soljačić"}],"year":"2018","month":"08","publication_identifier":{"eissn":["2330-4022"]},"OA_type":"green","type":"journal_article","extern":"1","day":"30","publication":"ACS Photonics","publisher":"American Chemical Society ","date_published":"2018-08-30T00:00:00Z","doi":"10.1021/acsphotonics.8b00743","article_type":"letter_note","external_id":{"arxiv":["1710.05358"]},"date_created":"2026-03-30T12:22:47Z","_id":"21533","citation":{"apa":"Massuda, A., Roques-Carmes, C., Yang, Y., Kooi, S. E., Yang, Y., Murdia, C., … Soljačić, M. (2018). Smith–Purcell radiation from low-energy electrons. ACS Photonics. American Chemical Society . https://doi.org/10.1021/acsphotonics.8b00743","ieee":"A. Massuda et al., “Smith–Purcell radiation from low-energy electrons,” ACS Photonics, vol. 5, no. 9. American Chemical Society , pp. 3513–3518, 2018.","short":"A. Massuda, C. Roques-Carmes, Y. Yang, S.E. Kooi, Y. Yang, C. Murdia, K.K. Berggren, I. Kaminer, M. Soljačić, ACS Photonics 5 (2018) 3513–3518.","ama":"Massuda A, Roques-Carmes C, Yang Y, et al. Smith–Purcell radiation from low-energy electrons. ACS Photonics. 2018;5(9):3513-3518. doi:10.1021/acsphotonics.8b00743","chicago":"Massuda, Aviram, Charles Roques-Carmes, Yujia Yang, Steven E. Kooi, Yi Yang, Chitraang Murdia, Karl K. Berggren, Ido Kaminer, and Marin Soljačić. “Smith–Purcell Radiation from Low-Energy Electrons.” ACS Photonics. American Chemical Society , 2018. https://doi.org/10.1021/acsphotonics.8b00743.","ista":"Massuda A, Roques-Carmes C, Yang Y, Kooi SE, Yang Y, Murdia C, Berggren KK, Kaminer I, Soljačić M. 2018. Smith–Purcell radiation from low-energy electrons. ACS Photonics. 5(9), 3513–3518.","mla":"Massuda, Aviram, et al. “Smith–Purcell Radiation from Low-Energy Electrons.” ACS Photonics, vol. 5, no. 9, American Chemical Society , 2018, pp. 3513–18, doi:10.1021/acsphotonics.8b00743."},"main_file_link":[{"url":"https://doi.org/10.48550/arXiv.1710.05358","open_access":"1"}],"article_processing_charge":"No","abstract":[{"lang":"eng","text":"Recent advances in the fabrication of nanostructures and nanoscale features in metasurfaces offer new prospects for generating visible light emission from low-energy electrons. Here we present the experimental observation of visible light emission from low-energy free electrons interacting with nanoscale periodic surfaces through the Smith–Purcell (SP) effect. We demonstrate SP light emission from nanoscale gratings with periodicity as small as 50 nm, enabling the observation of tunable visible radiation from low-energy electrons (1.5 to 6 keV), an order of magnitude lower in energy than previously reported. We study the emission wavelength and intensity dependence on the grating pitch and electron energy, showing agreement between experiment and theory. Our results open the way to the production of SP-based nanophotonics integrated devices. Built inside electron microscopes, SP sources could enable the development of novel electron–optical correlated spectroscopic techniques and facilitate the observation of new quantum effects in light sources."}],"scopus_import":"1","date_updated":"2026-04-15T11:48:45Z"}]