[{"citation":{"mla":"Swoboda, Paul, and Vladimir Kolmogorov. “Map Inference via Block-Coordinate Frank-Wolfe Algorithm.” <i>Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition</i>, vol. 2019–June, 11138–11147, IEEE, 2019, doi:<a href=\"https://doi.org/10.1109/CVPR.2019.01140\">10.1109/CVPR.2019.01140</a>.","short":"P. Swoboda, V. Kolmogorov, in:, Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition, IEEE, 2019.","ieee":"P. Swoboda and V. Kolmogorov, “Map inference via block-coordinate Frank-Wolfe algorithm,” in <i>Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition</i>, Long Beach, CA, United States, 2019, vol. 2019–June.","apa":"Swoboda, P., &#38; Kolmogorov, V. (2019). Map inference via block-coordinate Frank-Wolfe algorithm. In <i>Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition</i> (Vol. 2019–June). Long Beach, CA, United States: IEEE. <a href=\"https://doi.org/10.1109/CVPR.2019.01140\">https://doi.org/10.1109/CVPR.2019.01140</a>","ista":"Swoboda P, Kolmogorov V. 2019. Map inference via block-coordinate Frank-Wolfe algorithm. Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition. CVPR: Conference on Computer Vision and Pattern Recognition vol. 2019–June, 11138–11147.","ama":"Swoboda P, Kolmogorov V. Map inference via block-coordinate Frank-Wolfe algorithm. In: <i>Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition</i>. Vol 2019-June. IEEE; 2019. doi:<a href=\"https://doi.org/10.1109/CVPR.2019.01140\">10.1109/CVPR.2019.01140</a>","chicago":"Swoboda, Paul, and Vladimir Kolmogorov. “Map Inference via Block-Coordinate Frank-Wolfe Algorithm.” In <i>Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition</i>, Vol. 2019–June. IEEE, 2019. <a href=\"https://doi.org/10.1109/CVPR.2019.01140\">https://doi.org/10.1109/CVPR.2019.01140</a>."},"date_created":"2020-02-09T23:00:52Z","type":"conference","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","day":"01","title":"Map inference via block-coordinate Frank-Wolfe algorithm","isi":1,"scopus_import":"1","date_published":"2019-06-01T00:00:00Z","department":[{"_id":"VlKo"}],"article_number":"11138-11147","status":"public","abstract":[{"text":"We present a new proximal bundle method for Maximum-A-Posteriori (MAP) inference in structured energy minimization problems. The method optimizes a Lagrangean relaxation of the original energy minimization problem using a multi plane block-coordinate Frank-Wolfe method that takes advantage of the specific structure of the Lagrangean decomposition. We show empirically that our method outperforms state-of-the-art Lagrangean decomposition based algorithms on some challenging Markov Random Field, multi-label discrete tomography and graph matching problems.","lang":"eng"}],"_id":"7468","main_file_link":[{"url":"https://arxiv.org/abs/1806.05049","open_access":"1"}],"external_id":{"arxiv":["1806.05049"],"isi":["000542649304076"]},"volume":"2019-June","year":"2019","publisher":"IEEE","publication":"Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition","oa_version":"Preprint","quality_controlled":"1","date_updated":"2025-07-10T11:54:39Z","doi":"10.1109/CVPR.2019.01140","article_processing_charge":"No","arxiv":1,"fulldoi":"https://doi.org/10.1109/CVPR.2019.01140","publication_identifier":{"isbn":["9781728132938"],"issn":["1063-6919"]},"oa":1,"author":[{"full_name":"Swoboda, Paul","id":"446560C6-F248-11E8-B48F-1D18A9856A87","last_name":"Swoboda","first_name":"Paul"},{"full_name":"Kolmogorov, Vladimir","id":"3D50B0BA-F248-11E8-B48F-1D18A9856A87","last_name":"Kolmogorov","first_name":"Vladimir"}],"language":[{"iso":"eng"}],"ec_funded":1,"project":[{"_id":"25FBA906-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","grant_number":"616160","name":"Discrete Optimization in Computer Vision: Theory and Practice"}],"conference":{"location":"Long Beach, CA, United States","name":"CVPR: Conference on Computer Vision and Pattern Recognition","start_date":"2019-06-15","end_date":"2019-06-20"},"month":"06","publication_status":"published"},{"citation":{"mla":"Andersen, Marianne Stemann, et al. “Tracing the Cellular Dynamics of Sebaceous Gland Development in Normal and Perturbed States.” <i>Nature Cell Biology</i>, vol. 21, no. 8, Springer Nature, 2019, pp. 924–32, doi:<a href=\"https://doi.org/10.1038/s41556-019-0362-x\">10.1038/s41556-019-0362-x</a>.","apa":"Andersen, M. S., Hannezo, E. B., Ulyanchenko, S., Estrach, S., Antoku, Y., Pisano, S., … Jensen, K. B. (2019). Tracing the cellular dynamics of sebaceous gland development in normal and perturbed states. <i>Nature Cell Biology</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41556-019-0362-x\">https://doi.org/10.1038/s41556-019-0362-x</a>","short":"M.S. Andersen, E.B. Hannezo, S. Ulyanchenko, S. Estrach, Y. Antoku, S. Pisano, K.E. Boonekamp, S. Sendrup, M. Maimets, M.T. Pedersen, J.V. Johansen, D.L. Clement, C.C. Feral, B.D. Simons, K.B. Jensen, Nature Cell Biology 21 (2019) 924–932.","ieee":"M. S. Andersen <i>et al.</i>, “Tracing the cellular dynamics of sebaceous gland development in normal and perturbed states,” <i>Nature Cell Biology</i>, vol. 21, no. 8. Springer Nature, pp. 924–932, 2019.","chicago":"Andersen, Marianne Stemann, Edouard B Hannezo, Svetlana Ulyanchenko, Soline Estrach, Yasuko Antoku, Sabrina Pisano, Kim E. Boonekamp, et al. “Tracing the Cellular Dynamics of Sebaceous Gland Development in Normal and Perturbed States.” <i>Nature Cell Biology</i>. Springer Nature, 2019. <a href=\"https://doi.org/10.1038/s41556-019-0362-x\">https://doi.org/10.1038/s41556-019-0362-x</a>.","ama":"Andersen MS, Hannezo EB, Ulyanchenko S, et al. Tracing the cellular dynamics of sebaceous gland development in normal and perturbed states. <i>Nature Cell Biology</i>. 2019;21(8):924-932. doi:<a href=\"https://doi.org/10.1038/s41556-019-0362-x\">10.1038/s41556-019-0362-x</a>","ista":"Andersen MS, Hannezo EB, Ulyanchenko S, Estrach S, Antoku Y, Pisano S, Boonekamp KE, Sendrup S, Maimets M, Pedersen MT, Johansen JV, Clement DL, Feral CC, Simons BD, Jensen KB. 2019. Tracing the cellular dynamics of sebaceous gland development in normal and perturbed states. Nature Cell Biology. 21(8), 924–932."},"date_created":"2020-02-11T08:43:49Z","type":"journal_article","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"Tracing the cellular dynamics of sebaceous gland development in normal and perturbed states","day":"01","issue":"8","date_published":"2019-08-01T00:00:00Z","status":"public","_id":"7476","abstract":[{"lang":"eng","text":"The sebaceous gland (SG) is an essential component of the skin, and SG dysfunction is debilitating1,2. Yet, the cellular bases for its origin, development and subsequent maintenance remain poorly understood. Here, we apply large-scale quantitative fate mapping to define the patterns of cell fate behaviour during SG development and maintenance. We show that the SG develops from a defined number of lineage-restricted progenitors that undergo a programme of independent and stochastic cell fate decisions. Following an expansion phase, equipotent progenitors transition into a phase of homeostatic turnover, which is correlated with changes in the mechanical properties of the stroma and spatial restrictions on gland size. Expression of the oncogene KrasG12D results in a release from these constraints and unbridled gland expansion. Quantitative clonal fate analysis reveals that, during this phase, the primary effect of the Kras oncogene is to drive a constant fate bias with little effect on cell division rates. These findings provide insight into the developmental programme of the SG, as well as the mechanisms that drive tumour progression and gland dysfunction."}],"volume":21,"page":"924-932","external_id":{"pmid":["31358966"]},"main_file_link":[{"url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6978139/","open_access":"1"}],"year":"2019","publisher":"Springer Nature","publication":"Nature Cell Biology","date_updated":"2021-01-12T08:13:47Z","quality_controlled":"1","oa_version":"Submitted Version","extern":"1","doi":"10.1038/s41556-019-0362-x","fulldoi":"https://doi.org/10.1038/s41556-019-0362-x","article_processing_charge":"No","pmid":1,"oa":1,"publication_identifier":{"issn":["1465-7392","1476-4679"]},"author":[{"first_name":"Marianne Stemann","last_name":"Andersen","full_name":"Andersen, Marianne Stemann"},{"full_name":"Hannezo, Edouard B","last_name":"Hannezo","first_name":"Edouard B","orcid":"0000-0001-6005-1561","id":"3A9DB764-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Svetlana","last_name":"Ulyanchenko","full_name":"Ulyanchenko, Svetlana"},{"full_name":"Estrach, Soline","first_name":"Soline","last_name":"Estrach"},{"last_name":"Antoku","first_name":"Yasuko","full_name":"Antoku, Yasuko"},{"full_name":"Pisano, Sabrina","last_name":"Pisano","first_name":"Sabrina"},{"last_name":"Boonekamp","first_name":"Kim E.","full_name":"Boonekamp, Kim E."},{"first_name":"Sarah","last_name":"Sendrup","full_name":"Sendrup, Sarah"},{"full_name":"Maimets, Martti","last_name":"Maimets","first_name":"Martti"},{"first_name":"Marianne Terndrup","last_name":"Pedersen","full_name":"Pedersen, Marianne Terndrup"},{"last_name":"Johansen","first_name":"Jens V.","full_name":"Johansen, Jens V."},{"full_name":"Clement, Ditte L.","first_name":"Ditte L.","last_name":"Clement"},{"full_name":"Feral, Chloe C.","first_name":"Chloe C.","last_name":"Feral"},{"full_name":"Simons, Benjamin D.","first_name":"Benjamin D.","last_name":"Simons"},{"full_name":"Jensen, Kim B.","first_name":"Kim B.","last_name":"Jensen"}],"language":[{"iso":"eng"}],"month":"08","publication_status":"published","intvolume":"        21","article_type":"original"},{"publication_status":"published","month":"02","author":[{"id":"2F64EC8C-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2193-3868","first_name":"Sylvia","last_name":"Cremer","full_name":"Cremer, Sylvia"},{"full_name":"Kutzer, Megan","id":"29D0B332-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8696-6978","last_name":"Kutzer","first_name":"Megan"}],"language":[{"iso":"eng"}],"fulldoi":"https://doi.org/10.1016/B978-0-12-809633-8.90721-0","article_processing_charge":"No","publication_identifier":{"isbn":["9780128132517"],"eisbn":["9780128132524"]},"doi":"10.1016/B978-0-12-809633-8.90721-0","date_updated":"2023-09-08T11:12:04Z","quality_controlled":"1","oa_version":"None","editor":[{"full_name":"Choe, Jae","last_name":"Choe","first_name":"Jae"}],"publisher":"Elsevier","publication":"Encyclopedia of Animal Behavior","year":"2019","page":"747-755","external_id":{"isi":["000248989500026"]},"_id":"7513","abstract":[{"lang":"eng","text":"Social insects (i.e., ants, termites and the social bees and wasps) protect their colonies from disease using a combination of individual immunity and collectively performed defenses, termed social immunity. The first line of social immune defense is sanitary care, which is performed by colony members to protect their pathogen-exposed nestmates from developing an infection. If sanitary care fails and an infection becomes established, a second line of social immune defense is deployed to stop disease transmission within the colony and to protect the valuable queens, which together with the males are the reproductive individuals of the colony. Insect colonies are separated into these reproductive individuals and the sterile worker force, forming a superorganismal reproductive unit reminiscent of the differentiated germline and soma in a multicellular organism. Ultimately, the social immune response preserves the germline of the superorganism insect colony and increases overall fitness of the colony in case of disease. "}],"edition":"2","status":"public","date_published":"2019-02-06T00:00:00Z","department":[{"_id":"SyCr"}],"scopus_import":"1","isi":1,"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","title":"Social immunity","day":"06","type":"book_chapter","citation":{"mla":"Cremer, Sylvia, and Megan Kutzer. “Social Immunity.” <i>Encyclopedia of Animal Behavior</i>, edited by Jae Choe, 2nd ed., Elsevier, 2019, pp. 747–55, doi:<a href=\"https://doi.org/10.1016/B978-0-12-809633-8.90721-0\">10.1016/B978-0-12-809633-8.90721-0</a>.","apa":"Cremer, S., &#38; Kutzer, M. (2019). Social immunity. In J. Choe (Ed.), <i>Encyclopedia of Animal Behavior</i> (2nd ed., pp. 747–755). Elsevier. <a href=\"https://doi.org/10.1016/B978-0-12-809633-8.90721-0\">https://doi.org/10.1016/B978-0-12-809633-8.90721-0</a>","short":"S. Cremer, M. Kutzer, in:, J. Choe (Ed.), Encyclopedia of Animal Behavior, 2nd ed., Elsevier, 2019, pp. 747–755.","ieee":"S. Cremer and M. Kutzer, “Social immunity,” in <i>Encyclopedia of Animal Behavior</i>, 2nd ed., J. Choe, Ed. Elsevier, 2019, pp. 747–755.","chicago":"Cremer, Sylvia, and Megan Kutzer. “Social Immunity.” In <i>Encyclopedia of Animal Behavior</i>, edited by Jae Choe, 2nd ed., 747–55. Elsevier, 2019. <a href=\"https://doi.org/10.1016/B978-0-12-809633-8.90721-0\">https://doi.org/10.1016/B978-0-12-809633-8.90721-0</a>.","ama":"Cremer S, Kutzer M. Social immunity. In: Choe J, ed. <i>Encyclopedia of Animal Behavior</i>. 2nd ed. Elsevier; 2019:747-755. doi:<a href=\"https://doi.org/10.1016/B978-0-12-809633-8.90721-0\">10.1016/B978-0-12-809633-8.90721-0</a>","ista":"Cremer S, Kutzer M. 2019.Social immunity. In: Encyclopedia of Animal Behavior. , 747–755."},"date_created":"2020-02-23T23:00:36Z"},{"abstract":[{"lang":"eng","text":"We prove a lower bound for the free energy (per unit volume) of the two-dimensional Bose gas in the thermodynamic limit. We show that the free energy at density $\\rho$ and inverse temperature $\\beta$ differs from the one of the non-interacting system by the correction term $4 \\pi \\rho^2 |\\ln a^2 \\rho|^{-1} (2 - [1 - \\beta_{\\mathrm{c}}/\\beta]_+^2)$. Here $a$ is the scattering length of the interaction potential, $[\\cdot]_+ = \\max\\{ 0, \\cdot \\}$ and $\\beta_{\\mathrm{c}}$ is the inverse Berezinskii--Kosterlitz--Thouless critical temperature for superfluidity. The result is valid in the dilute limit\r\n$a^2\\rho \\ll 1$ and if $\\beta \\rho \\gtrsim 1$."}],"_id":"7524","article_number":"1910.03372","status":"public","date_published":"2019-10-08T00:00:00Z","department":[{"_id":"RoSe"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"The free energy of the two-dimensional dilute Bose gas. I. Lower bound","day":"08","type":"preprint","date_created":"2020-02-26T08:46:40Z","citation":{"ama":"Deuchert A, Mayer S, Seiringer R. The free energy of the two-dimensional dilute Bose gas. I. Lower bound. <i>arXiv</i>. doi:<a href=\"https://doi.org/10.48550/arXiv.1910.03372\">10.48550/arXiv.1910.03372</a>","chicago":"Deuchert, Andreas, Simon Mayer, and Robert Seiringer. “The Free Energy of the Two-Dimensional Dilute Bose Gas. I. Lower Bound.” <i>ArXiv</i>, n.d. <a href=\"https://doi.org/10.48550/arXiv.1910.03372\">https://doi.org/10.48550/arXiv.1910.03372</a>.","ista":"Deuchert A, Mayer S, Seiringer R. The free energy of the two-dimensional dilute Bose gas. I. Lower bound. arXiv, 1910.03372.","apa":"Deuchert, A., Mayer, S., &#38; Seiringer, R. (n.d.). The free energy of the two-dimensional dilute Bose gas. I. Lower bound. <i>arXiv</i>. <a href=\"https://doi.org/10.48550/arXiv.1910.03372\">https://doi.org/10.48550/arXiv.1910.03372</a>","short":"A. Deuchert, S. Mayer, R. Seiringer, ArXiv (n.d.).","ieee":"A. Deuchert, S. Mayer, and R. Seiringer, “The free energy of the two-dimensional dilute Bose gas. I. Lower bound,” <i>arXiv</i>. .","mla":"Deuchert, Andreas, et al. “The Free Energy of the Two-Dimensional Dilute Bose Gas. I. Lower Bound.” <i>ArXiv</i>, 1910.03372, doi:<a href=\"https://doi.org/10.48550/arXiv.1910.03372\">10.48550/arXiv.1910.03372</a>."},"OA_type":"green","publication_status":"draft","month":"10","author":[{"full_name":"Deuchert, Andreas","id":"4DA65CD0-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-3146-6746","last_name":"Deuchert","first_name":"Andreas"},{"full_name":"Mayer, Simon","id":"30C4630A-F248-11E8-B48F-1D18A9856A87","first_name":"Simon","last_name":"Mayer"},{"id":"4AFD0470-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6781-0521","first_name":"Robert","last_name":"Seiringer","full_name":"Seiringer, Robert"}],"project":[{"grant_number":"694227","name":"Analysis of quantum many-body systems","_id":"25C6DC12-B435-11E9-9278-68D0E5697425","call_identifier":"H2020"}],"ec_funded":1,"language":[{"iso":"eng"}],"corr_author":"1","fulldoi":"https://doi.org/10.48550/arXiv.1910.03372","article_processing_charge":"No","arxiv":1,"oa":1,"doi":"10.48550/arXiv.1910.03372","OA_place":"repository","date_updated":"2026-04-08T07:25:40Z","oa_version":"Preprint","related_material":{"record":[{"status":"public","relation":"later_version","id":"7790"},{"status":"public","relation":"dissertation_contains","id":"7514"}]},"publication":"arXiv","year":"2019","main_file_link":[{"url":"https://arxiv.org/abs/1910.03372","open_access":"1"}],"page":"61","external_id":{"arxiv":["1910.03372"]}},{"oa":1,"publication_identifier":{"issn":["1049-5258"]},"article_processing_charge":"No","arxiv":1,"language":[{"iso":"eng"}],"ec_funded":1,"project":[{"name":"Elastic Coordination for Scalable Machine Learning","grant_number":"805223","call_identifier":"H2020","_id":"268A44D6-B435-11E9-9278-68D0E5697425"}],"author":[{"full_name":"Wendler, Chris","first_name":"Chris","last_name":"Wendler"},{"id":"4A899BFC-F248-11E8-B48F-1D18A9856A87","last_name":"Alistarh","first_name":"Dan-Adrian","orcid":"0000-0003-3650-940X","full_name":"Alistarh, Dan-Adrian"},{"last_name":"Püschel","first_name":"Markus","full_name":"Püschel, Markus"}],"month":"12","ddc":["000"],"publication_status":"published","intvolume":"        32","conference":{"location":"Vancouver, Canada","end_date":"2019-12-14","start_date":"2019-12-08","name":"NIPS: Conference on Neural Information Processing Systems"},"external_id":{"isi":["000534424300084"],"arxiv":["1909.02253"]},"main_file_link":[{"url":"http://papers.nips.cc/paper/8379-powerset-convolutional-neural-networks","open_access":"1"}],"volume":32,"page":"927-938","year":"2019","publisher":"Neural Information Processing Systems Foundation","oa_version":"Published Version","quality_controlled":"1","date_updated":"2026-06-18T19:23:08Z","department":[{"_id":"DaAl"}],"date_published":"2019-12-01T00:00:00Z","status":"public","abstract":[{"lang":"eng","text":"We present a novel class of convolutional neural networks (CNNs) for set functions,i.e., data indexed with the powerset of a finite set. The convolutions are derivedas linear, shift-equivariant functions for various notions of shifts on set functions.The framework is fundamentally different from graph convolutions based on theLaplacian, as it provides not one but several basic shifts, one for each element inthe ground set. Prototypical experiments with several set function classificationtasks on synthetic datasets and on datasets derived from real-world hypergraphsdemonstrate the potential of our new powerset CNNs."}],"_id":"7542","citation":{"chicago":"Wendler, Chris, Dan-Adrian Alistarh, and Markus Püschel. “Powerset Convolutional Neural Networks,” 32:927–38. Neural Information Processing Systems Foundation, 2019.","ama":"Wendler C, Alistarh D-A, Püschel M. Powerset convolutional neural networks. In: Vol 32. Neural Information Processing Systems Foundation; 2019:927-938.","ista":"Wendler C, Alistarh D-A, Püschel M. 2019. Powerset convolutional neural networks. NIPS: Conference on Neural Information Processing Systems vol. 32, 927–938.","mla":"Wendler, Chris, et al. <i>Powerset Convolutional Neural Networks</i>. Vol. 32, Neural Information Processing Systems Foundation, 2019, pp. 927–38.","ieee":"C. Wendler, D.-A. Alistarh, and M. Püschel, “Powerset convolutional neural networks,” presented at the NIPS: Conference on Neural Information Processing Systems, Vancouver, Canada, 2019, vol. 32, pp. 927–938.","short":"C. Wendler, D.-A. Alistarh, M. Püschel, in:, Neural Information Processing Systems Foundation, 2019, pp. 927–938.","apa":"Wendler, C., Alistarh, D.-A., &#38; Püschel, M. (2019). Powerset convolutional neural networks (Vol. 32, pp. 927–938). Presented at the NIPS: Conference on Neural Information Processing Systems, Vancouver, Canada: Neural Information Processing Systems Foundation."},"date_created":"2020-02-28T10:03:24Z","type":"conference","day":"01","title":"Powerset convolutional neural networks","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","isi":1},{"issue":"11","day":"01","title":"Activity-dependent regulation of the proapoptotic BH3-only gene egl-1 in a living neuron pair in Caenorhabditis elegans","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","type":"journal_article","citation":{"chicago":"Cohn, Jesse, Vivek Dwivedi, Giulio Valperga, Nicole Zarate, Mario de Bono, H. Robert Horvitz, and Jonathan T. Pierce. “Activity-Dependent Regulation of the Proapoptotic BH3-Only Gene Egl-1 in a Living Neuron Pair in Caenorhabditis Elegans.” <i>G3: Genes, Genomes, Genetics</i>. Genetics Society of America, 2019. <a href=\"https://doi.org/10.1534/g3.119.400654\">https://doi.org/10.1534/g3.119.400654</a>.","ama":"Cohn J, Dwivedi V, Valperga G, et al. Activity-dependent regulation of the proapoptotic BH3-only gene egl-1 in a living neuron pair in Caenorhabditis elegans. <i>G3: Genes, Genomes, Genetics</i>. 2019;9(11):3703-3714. doi:<a href=\"https://doi.org/10.1534/g3.119.400654\">10.1534/g3.119.400654</a>","ista":"Cohn J, Dwivedi V, Valperga G, Zarate N, de Bono M, Horvitz HR, Pierce JT. 2019. Activity-dependent regulation of the proapoptotic BH3-only gene egl-1 in a living neuron pair in Caenorhabditis elegans. G3: Genes, Genomes, Genetics. 9(11), 3703–3714.","mla":"Cohn, Jesse, et al. “Activity-Dependent Regulation of the Proapoptotic BH3-Only Gene Egl-1 in a Living Neuron Pair in Caenorhabditis Elegans.” <i>G3: Genes, Genomes, Genetics</i>, vol. 9, no. 11, Genetics Society of America, 2019, pp. 3703–14, doi:<a href=\"https://doi.org/10.1534/g3.119.400654\">10.1534/g3.119.400654</a>.","ieee":"J. Cohn <i>et al.</i>, “Activity-dependent regulation of the proapoptotic BH3-only gene egl-1 in a living neuron pair in Caenorhabditis elegans,” <i>G3: Genes, Genomes, Genetics</i>, vol. 9, no. 11. Genetics Society of America, pp. 3703–3714, 2019.","apa":"Cohn, J., Dwivedi, V., Valperga, G., Zarate, N., de Bono, M., Horvitz, H. R., &#38; Pierce, J. T. (2019). Activity-dependent regulation of the proapoptotic BH3-only gene egl-1 in a living neuron pair in Caenorhabditis elegans. <i>G3: Genes, Genomes, Genetics</i>. Genetics Society of America. <a href=\"https://doi.org/10.1534/g3.119.400654\">https://doi.org/10.1534/g3.119.400654</a>","short":"J. Cohn, V. Dwivedi, G. Valperga, N. Zarate, M. de Bono, H.R. Horvitz, J.T. Pierce, G3: Genes, Genomes, Genetics 9 (2019) 3703–3714."},"date_created":"2020-02-28T10:44:27Z","_id":"7547","abstract":[{"lang":"eng","text":"The BH3-only family of proteins is key for initiating apoptosis in a variety of contexts, and may also contribute to non-apoptotic cellular processes. Historically, the nematode Caenorhabditis elegans has provided a powerful system for studying and identifying conserved regulators of BH3-only proteins. In C. elegans, the BH3-only protein egl-1 is expressed during development to cell-autonomously trigger most developmental cell deaths. Here we provide evidence that egl-1 is also transcribed after development in the sensory neuron pair URX without inducing apoptosis. We used genetic screening and epistasis analysis to determine that its transcription is regulated in URX by neuronal activity and/or in parallel by orthologs of Protein Kinase G and the Salt-Inducible Kinase family. Because several BH3-only family proteins are also expressed in the adult nervous system of mammals, we suggest that studying egl-1 expression in URX may shed light on mechanisms that regulate conserved family members in higher organisms."}],"status":"public","date_published":"2019-11-01T00:00:00Z","oa_version":"Published Version","extern":"1","quality_controlled":"1","date_updated":"2021-01-12T08:14:07Z","publisher":"Genetics Society of America","publication":"G3: Genes, Genomes, Genetics","year":"2019","page":"3703-3714","volume":9,"external_id":{"pmid":["31519744"]},"intvolume":"         9","month":"11","publication_status":"published","article_type":"original","language":[{"iso":"eng"}],"author":[{"last_name":"Cohn","first_name":"Jesse","full_name":"Cohn, Jesse"},{"last_name":"Dwivedi","first_name":"Vivek","full_name":"Dwivedi, Vivek"},{"first_name":"Giulio","last_name":"Valperga","full_name":"Valperga, Giulio"},{"first_name":"Nicole","last_name":"Zarate","full_name":"Zarate, Nicole"},{"full_name":"de Bono, Mario","orcid":"0000-0001-8347-0443","first_name":"Mario","last_name":"de Bono","id":"4E3FF80E-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Horvitz","first_name":"H. Robert","full_name":"Horvitz, H. Robert"},{"last_name":"Pierce","first_name":"Jonathan T.","full_name":"Pierce, Jonathan T."}],"publication_identifier":{"issn":["2160-1836"]},"pmid":1,"article_processing_charge":"No","fulldoi":"https://doi.org/10.1534/g3.119.400654","doi":"10.1534/g3.119.400654"},{"status":"public","publication_identifier":{"issn":["1932-6203"]},"article_number":"e0217746","fulldoi":"https://doi.org/10.1371/journal.pone.0217746","article_processing_charge":"No","date_published":"2019-05-31T00:00:00Z","doi":"10.1371/journal.pone.0217746","intvolume":"        14","publication_status":"published","month":"05","article_type":"original","language":[{"iso":"eng"}],"author":[{"full_name":"Sinnige, Tessa","last_name":"Sinnige","first_name":"Tessa"},{"first_name":"Prashanth","last_name":"Ciryam","full_name":"Ciryam, Prashanth"},{"last_name":"Casford","first_name":"Samuel","full_name":"Casford, Samuel"},{"first_name":"Christopher M.","last_name":"Dobson","full_name":"Dobson, Christopher M."},{"full_name":"de Bono, Mario","id":"4E3FF80E-F248-11E8-B48F-1D18A9856A87","first_name":"Mario","last_name":"de Bono","orcid":"0000-0001-8347-0443"},{"first_name":"Michele","last_name":"Vendruscolo","full_name":"Vendruscolo, Michele"}],"_id":"7548","abstract":[{"text":"Although the aggregation of the amyloid-β peptide (Aβ) into amyloid fibrils is a well-established hallmark of Alzheimer’s disease, the complex mechanisms linking this process to neurodegeneration are still incompletely understood. The nematode worm C. elegans is a valuable model organism through which to study these mechanisms because of its simple nervous system and its relatively short lifespan. Standard Aβ-based C. elegans models of Alzheimer’s disease are designed to study the toxic effects of the overexpression of Aβ in the muscle or nervous systems. However, the wide variety of effects associated with the tissue-level overexpression of Aβ makes it difficult to single out and study specific cellular mechanisms related to the onset of Alzheimer’s disease. Here, to better understand how to investigate the early events affecting neuronal signalling, we created a C. elegans model expressing Aβ42, the 42-residue form of Aβ, from a single-copy gene insertion in just one pair of glutamatergic sensory neurons, the BAG neurons. In behavioural assays, we found that the Aβ42-expressing animals displayed a subtle modulation of the response to CO2, compared to controls. Ca2+ imaging revealed that the BAG neurons in young Aβ42-expressing nematodes were activated more strongly than in control animals, and that neuronal activation remained intact until old age. Taken together, our results suggest that Aβ42-expression in this very subtle model of AD is sufficient to modulate the behavioural response but not strong enough to generate significant neurotoxicity, suggesting that slightly more aggressive perturbations will enable effectively studies of the links between the modulation of a physiological response and its associated neurotoxicity.","lang":"eng"}],"year":"2019","type":"journal_article","date_created":"2020-02-28T10:45:13Z","citation":{"chicago":"Sinnige, Tessa, Prashanth Ciryam, Samuel Casford, Christopher M. Dobson, Mario de Bono, and Michele Vendruscolo. “Expression of the Amyloid-β Peptide in a Single Pair of C. Elegans Sensory Neurons Modulates the Associated Behavioural Response.” <i>PLOS ONE</i>. Public Library of Science, 2019. <a href=\"https://doi.org/10.1371/journal.pone.0217746\">https://doi.org/10.1371/journal.pone.0217746</a>.","ama":"Sinnige T, Ciryam P, Casford S, Dobson CM, de Bono M, Vendruscolo M. Expression of the amyloid-β peptide in a single pair of C. elegans sensory neurons modulates the associated behavioural response. <i>PLOS ONE</i>. 2019;14(5). doi:<a href=\"https://doi.org/10.1371/journal.pone.0217746\">10.1371/journal.pone.0217746</a>","ista":"Sinnige T, Ciryam P, Casford S, Dobson CM, de Bono M, Vendruscolo M. 2019. Expression of the amyloid-β peptide in a single pair of C. elegans sensory neurons modulates the associated behavioural response. PLOS ONE. 14(5), e0217746.","mla":"Sinnige, Tessa, et al. “Expression of the Amyloid-β Peptide in a Single Pair of C. Elegans Sensory Neurons Modulates the Associated Behavioural Response.” <i>PLOS ONE</i>, vol. 14, no. 5, e0217746, Public Library of Science, 2019, doi:<a href=\"https://doi.org/10.1371/journal.pone.0217746\">10.1371/journal.pone.0217746</a>.","short":"T. Sinnige, P. Ciryam, S. Casford, C.M. Dobson, M. de Bono, M. Vendruscolo, PLOS ONE 14 (2019).","ieee":"T. Sinnige, P. Ciryam, S. Casford, C. M. Dobson, M. de Bono, and M. Vendruscolo, “Expression of the amyloid-β peptide in a single pair of C. elegans sensory neurons modulates the associated behavioural response,” <i>PLOS ONE</i>, vol. 14, no. 5. Public Library of Science, 2019.","apa":"Sinnige, T., Ciryam, P., Casford, S., Dobson, C. M., de Bono, M., &#38; Vendruscolo, M. (2019). Expression of the amyloid-β peptide in a single pair of C. elegans sensory neurons modulates the associated behavioural response. <i>PLOS ONE</i>. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pone.0217746\">https://doi.org/10.1371/journal.pone.0217746</a>"},"volume":14,"quality_controlled":"1","date_updated":"2021-01-12T08:14:08Z","oa_version":"Published Version","extern":"1","issue":"5","title":"Expression of the amyloid-β peptide in a single pair of C. elegans sensory neurons modulates the associated behavioural response","publisher":"Public Library of Science","day":"31","publication":"PLOS ONE","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"main_file_link":[{"open_access":"1","url":" https://doi.org/10.48550/arXiv.1910.10050"}],"external_id":{"arxiv":["1910.10050"]},"volume":28,"page":"425-447","year":"2019","publication":"Advances in Mathematical Sciences and Applications","publisher":"Gakko Tosho","oa_version":"Preprint","quality_controlled":"1","OA_place":"repository","date_updated":"2025-06-26T10:23:55Z","oa":1,"publication_identifier":{"issn":["1343-4373"]},"article_processing_charge":"No","arxiv":1,"corr_author":"1","language":[{"iso":"eng"}],"project":[{"grant_number":"F6504","name":"Taming Complexity in Partial Differential Systems","_id":"fc31cba2-9c52-11eb-aca3-ff467d239cd2"}],"author":[{"full_name":"Portinale, Lorenzo","id":"30AD2CBC-F248-11E8-B48F-1D18A9856A87","first_name":"Lorenzo","last_name":"Portinale"},{"last_name":"Stefanelli","first_name":"Ulisse","full_name":"Stefanelli, Ulisse"}],"article_type":"original","month":"10","intvolume":"        28","publication_status":"published","OA_type":"green","citation":{"ista":"Portinale L, Stefanelli U. 2019. Penalization via global functionals of optimal-control problems for dissipative evolution. Advances in Mathematical Sciences and Applications. 28(2), 425–447.","chicago":"Portinale, Lorenzo, and Ulisse Stefanelli. “Penalization via Global Functionals of Optimal-Control Problems for Dissipative Evolution.” <i>Advances in Mathematical Sciences and Applications</i>. Gakko Tosho, 2019.","ama":"Portinale L, Stefanelli U. Penalization via global functionals of optimal-control problems for dissipative evolution. <i>Advances in Mathematical Sciences and Applications</i>. 2019;28(2):425-447.","apa":"Portinale, L., &#38; Stefanelli, U. (2019). Penalization via global functionals of optimal-control problems for dissipative evolution. <i>Advances in Mathematical Sciences and Applications</i>. Gakko Tosho.","short":"L. Portinale, U. Stefanelli, Advances in Mathematical Sciences and Applications 28 (2019) 425–447.","ieee":"L. Portinale and U. Stefanelli, “Penalization via global functionals of optimal-control problems for dissipative evolution,” <i>Advances in Mathematical Sciences and Applications</i>, vol. 28, no. 2. Gakko Tosho, pp. 425–447, 2019.","mla":"Portinale, Lorenzo, and Ulisse Stefanelli. “Penalization via Global Functionals of Optimal-Control Problems for Dissipative Evolution.” <i>Advances in Mathematical Sciences and Applications</i>, vol. 28, no. 2, Gakko Tosho, 2019, pp. 425–47."},"date_created":"2020-02-28T10:54:41Z","type":"journal_article","day":"22","title":"Penalization via global functionals of optimal-control problems for dissipative evolution","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","issue":"2","department":[{"_id":"JaMa"}],"date_published":"2019-10-22T00:00:00Z","status":"public","abstract":[{"lang":"eng","text":"We consider an optimal control problem for an abstract nonlinear dissipative evolution equation. The differential constraint is penalized by augmenting the target functional by a nonnegative global-in-time functional which is null-minimized in the evolution equation is satisfied. Different variational settings are presented, leading to the convergence of the penalization method for gradient flows, noncyclic and semimonotone flows, doubly nonlinear evolutions, and GENERIC systems. "}],"_id":"7550","acknowledgement":"This work is supported by Vienna Science and Technology Fund (WWTF) through Project MA14-009 and by the Austrian Science Fund (FWF) projects F 65 and I 2375."},{"department":[{"_id":"GaTk"}],"date_published":"2019-12-18T00:00:00Z","doi":"10.48550/arXiv.1912.08579","status":"public","oa":1,"fulldoi":"https://doi.org/10.48550/arXiv.1912.08579","article_number":"1912.08579","arxiv":1,"article_processing_charge":"No","project":[{"name":"Biophysics of information processing in gene regulation","grant_number":"P28844-B27","_id":"254E9036-B435-11E9-9278-68D0E5697425","call_identifier":"FWF"}],"language":[{"iso":"eng"}],"author":[{"first_name":"William","last_name":"Bialek","full_name":"Bialek, William"},{"full_name":"Gregor, Thomas","first_name":"Thomas","last_name":"Gregor"},{"full_name":"Tkačik, Gašper","id":"3D494DCA-F248-11E8-B48F-1D18A9856A87","last_name":"Tkačik","first_name":"Gašper","orcid":"0000-0002-6699-1455"}],"abstract":[{"text":"There is increasing evidence that protein binding to specific sites along DNA can activate the reading out of genetic information without coming into direct physical contact with the gene. There also is evidence that these distant but interacting sites are embedded in a liquid droplet of proteins which condenses out of the surrounding solution. We argue that droplet-mediated interactions can account for crucial features of gene regulation only if the droplet is poised at a non-generic point in its phase diagram. We explore a minimal model that embodies this idea, show that this model has a natural mechanism for self-tuning, and suggest direct experimental tests. ","lang":"eng"}],"_id":"7552","month":"12","publication_status":"submitted","date_created":"2020-02-28T10:57:08Z","citation":{"ista":"Bialek W, Gregor T, Tkačik G. Action at a distance in transcriptional regulation. arXiv, 1912.08579.","ama":"Bialek W, Gregor T, Tkačik G. Action at a distance in transcriptional regulation. <i>arXiv</i>. doi:<a href=\"https://doi.org/10.48550/arXiv.1912.08579\">10.48550/arXiv.1912.08579</a>","chicago":"Bialek, William, Thomas Gregor, and Gašper Tkačik. “Action at a Distance in Transcriptional Regulation.” <i>ArXiv</i>. ArXiv, n.d. <a href=\"https://doi.org/10.48550/arXiv.1912.08579\">https://doi.org/10.48550/arXiv.1912.08579</a>.","short":"W. Bialek, T. Gregor, G. Tkačik, ArXiv (n.d.).","ieee":"W. Bialek, T. Gregor, and G. Tkačik, “Action at a distance in transcriptional regulation,” <i>arXiv</i>. ArXiv.","apa":"Bialek, W., Gregor, T., &#38; Tkačik, G. (n.d.). Action at a distance in transcriptional regulation. <i>arXiv</i>. ArXiv. <a href=\"https://doi.org/10.48550/arXiv.1912.08579\">https://doi.org/10.48550/arXiv.1912.08579</a>","mla":"Bialek, William, et al. “Action at a Distance in Transcriptional Regulation.” <i>ArXiv</i>, 1912.08579, ArXiv, doi:<a href=\"https://doi.org/10.48550/arXiv.1912.08579\">10.48550/arXiv.1912.08579</a>."},"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1912.08579"}],"external_id":{"arxiv":["1912.08579"]},"year":"2019","type":"preprint","title":"Action at a distance in transcriptional regulation","day":"18","publisher":"ArXiv","publication":"arXiv","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2025-05-19T10:54:36Z","oa_version":"Preprint"},{"type":"research_data_reference","year":"2019","citation":{"mla":"Sigalova, Olga M., et al. <i>Additional File 15 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction</i>. Springer Nature, 2019, doi:<a href=\"https://doi.org/10.6084/m9.figshare.9808802.v1\">10.6084/m9.figshare.9808802.v1</a>.","apa":"Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov, V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 15 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Springer Nature. <a href=\"https://doi.org/10.6084/m9.figshare.9808802.v1\">https://doi.org/10.6084/m9.figshare.9808802.v1</a>","ieee":"O. M. Sigalova <i>et al.</i>, “Additional file 15 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction.” Springer Nature, 2019.","short":"O.M. Sigalova, A.V. Chaplin, O. Bochkareva, P.V. Shelyakin, V.A. Filaretov, E.E. Akkuratov, V. Burskaia, M.S. Gelfand, (2019).","ista":"Sigalova OM, Chaplin AV, Bochkareva O, Shelyakin PV, Filaretov VA, Akkuratov EE, Burskaia V, Gelfand MS. 2019. Additional file 15 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction, Springer Nature, <a href=\"https://doi.org/10.6084/m9.figshare.9808802.v1\">10.6084/m9.figshare.9808802.v1</a>.","ama":"Sigalova OM, Chaplin AV, Bochkareva O, et al. Additional file 15 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. 2019. doi:<a href=\"https://doi.org/10.6084/m9.figshare.9808802.v1\">10.6084/m9.figshare.9808802.v1</a>","chicago":"Sigalova, Olga M., Andrei V. Chaplin, Olga Bochkareva, Pavel V. Shelyakin, Vsevolod A. Filaretov, Evgeny E. Akkuratov, Valentina Burskaia, and Mikhail S. Gelfand. “Additional File 15 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction.” Springer Nature, 2019. <a href=\"https://doi.org/10.6084/m9.figshare.9808802.v1\">https://doi.org/10.6084/m9.figshare.9808802.v1</a>."},"date_created":"2021-08-11T14:26:40Z","main_file_link":[{"url":"https://doi.org/10.6084/m9.figshare.9808802.v1","open_access":"1"}],"date_updated":"2026-04-03T09:39:40Z","oa_version":"Published Version","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","title":"Additional file 15 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction","related_material":{"record":[{"status":"public","relation":"used_in_publication","id":"6898"}]},"day":"12","publisher":"Springer Nature","fulldoi":"https://doi.org/10.6084/m9.figshare.9808802.v1","article_processing_charge":"No","status":"public","oa":1,"doi":"10.6084/m9.figshare.9808802.v1","date_published":"2019-09-12T00:00:00Z","department":[{"_id":"FyKo"}],"month":"09","author":[{"full_name":"Sigalova, Olga M.","first_name":"Olga M.","last_name":"Sigalova"},{"full_name":"Chaplin, Andrei V.","last_name":"Chaplin","first_name":"Andrei V."},{"last_name":"Bochkareva","first_name":"Olga","orcid":"0000-0003-1006-6639","id":"C4558D3C-6102-11E9-A62E-F418E6697425","full_name":"Bochkareva, Olga"},{"full_name":"Shelyakin, Pavel V.","last_name":"Shelyakin","first_name":"Pavel V."},{"last_name":"Filaretov","first_name":"Vsevolod A.","full_name":"Filaretov, Vsevolod A."},{"full_name":"Akkuratov, Evgeny E.","first_name":"Evgeny E.","last_name":"Akkuratov"},{"full_name":"Burskaia, Valentina","first_name":"Valentina","last_name":"Burskaia"},{"last_name":"Gelfand","first_name":"Mikhail S.","full_name":"Gelfand, Mikhail S."}],"_id":"9890","abstract":[{"text":"Distribution of OGs with mosaic phyletic patterns across species (complete genomes only). (CSV 7 kb)","lang":"eng"}]},{"month":"09","_id":"9892","abstract":[{"text":"Distribution of OGs with mosaic phyletic patterns across species (all genomes). (CSV 10 kb)","lang":"eng"}],"author":[{"full_name":"Sigalova, Olga M.","last_name":"Sigalova","first_name":"Olga M."},{"first_name":"Andrei V","last_name":"Chaplin","full_name":"Chaplin, Andrei V"},{"orcid":"0000-0003-1006-6639","last_name":"Bochkareva","first_name":"Olga","id":"C4558D3C-6102-11E9-A62E-F418E6697425","full_name":"Bochkareva, Olga"},{"full_name":"Shelyakin, Pavel V.","last_name":"Shelyakin","first_name":"Pavel V."},{"last_name":"Filaretov","first_name":"Vsevolod A.","full_name":"Filaretov, Vsevolod A."},{"full_name":"Akkuratov, Evgeny E.","first_name":"Evgeny E.","last_name":"Akkuratov"},{"full_name":"Burskaia, Valentina","first_name":"Valentina","last_name":"Burskaia"},{"full_name":"Gelfand, Mikhail S.","last_name":"Gelfand","first_name":"Mikhail S."}],"oa":1,"status":"public","article_processing_charge":"No","fulldoi":"https://doi.org/10.6084/m9.figshare.9808814.v1","department":[{"_id":"FyKo"}],"doi":"10.6084/m9.figshare.9808814.v1","date_published":"2019-09-12T00:00:00Z","oa_version":"Published Version","date_updated":"2026-04-03T09:39:40Z","publisher":"Springer Nature","day":"12","related_material":{"record":[{"status":"public","id":"6898","relation":"used_in_publication"}]},"title":"Additional file 16 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","year":"2019","type":"research_data_reference","main_file_link":[{"open_access":"1","url":"https://doi.org/10.6084/m9.figshare.9808814.v1"}],"citation":{"ista":"Sigalova OM, Chaplin AV, Bochkareva O, Shelyakin PV, Filaretov VA, Akkuratov EE, Burskaia V, Gelfand MS. 2019. Additional file 16 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction, Springer Nature, <a href=\"https://doi.org/10.6084/m9.figshare.9808814.v1\">10.6084/m9.figshare.9808814.v1</a>.","ama":"Sigalova OM, Chaplin AV, Bochkareva O, et al. Additional file 16 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. 2019. doi:<a href=\"https://doi.org/10.6084/m9.figshare.9808814.v1\">10.6084/m9.figshare.9808814.v1</a>","chicago":"Sigalova, Olga M., Andrei V Chaplin, Olga Bochkareva, Pavel V. Shelyakin, Vsevolod A. Filaretov, Evgeny E. Akkuratov, Valentina Burskaia, and Mikhail S. Gelfand. “Additional File 16 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction.” Springer Nature, 2019. <a href=\"https://doi.org/10.6084/m9.figshare.9808814.v1\">https://doi.org/10.6084/m9.figshare.9808814.v1</a>.","short":"O.M. Sigalova, A.V. Chaplin, O. Bochkareva, P.V. Shelyakin, V.A. Filaretov, E.E. Akkuratov, V. Burskaia, M.S. Gelfand, (2019).","apa":"Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov, V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 16 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Springer Nature. <a href=\"https://doi.org/10.6084/m9.figshare.9808814.v1\">https://doi.org/10.6084/m9.figshare.9808814.v1</a>","ieee":"O. M. Sigalova <i>et al.</i>, “Additional file 16 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction.” Springer Nature, 2019.","mla":"Sigalova, Olga M., et al. <i>Additional File 16 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction</i>. Springer Nature, 2019, doi:<a href=\"https://doi.org/10.6084/m9.figshare.9808814.v1\">10.6084/m9.figshare.9808814.v1</a>."},"date_created":"2021-08-12T07:11:53Z"},{"oa_version":"Published Version","date_updated":"2026-04-03T09:39:41Z","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","day":"12","related_material":{"record":[{"status":"public","id":"6898","relation":"used_in_publication"}]},"publisher":"Springer Nature","title":"Additional file 17 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction","type":"research_data_reference","year":"2019","main_file_link":[{"url":"https://doi.org/10.6084/m9.figshare.9808820.v1","open_access":"1"}],"date_created":"2021-08-12T07:20:10Z","citation":{"ieee":"O. M. Sigalova <i>et al.</i>, “Additional file 17 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction.” Springer Nature, 2019.","short":"O.M. Sigalova, A.V. Chaplin, O. Bochkareva, P.V. Shelyakin, V.A. Filaretov, E.E. Akkuratov, V. Burskaia, M.S. Gelfand, (2019).","apa":"Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov, V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 17 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Springer Nature. <a href=\"https://doi.org/10.6084/m9.figshare.9808820.v1\">https://doi.org/10.6084/m9.figshare.9808820.v1</a>","mla":"Sigalova, Olga M., et al. <i>Additional File 17 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction</i>. Springer Nature, 2019, doi:<a href=\"https://doi.org/10.6084/m9.figshare.9808820.v1\">10.6084/m9.figshare.9808820.v1</a>.","chicago":"Sigalova, Olga M., Andrei V. Chaplin, Olga Bochkareva, Pavel V. Shelyakin, Vsevolod A. Filaretov, Evgeny E. Akkuratov, Valentina Burskaia, and Mikhail S. Gelfand. “Additional File 17 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction.” Springer Nature, 2019. <a href=\"https://doi.org/10.6084/m9.figshare.9808820.v1\">https://doi.org/10.6084/m9.figshare.9808820.v1</a>.","ama":"Sigalova OM, Chaplin AV, Bochkareva O, et al. Additional file 17 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. 2019. doi:<a href=\"https://doi.org/10.6084/m9.figshare.9808820.v1\">10.6084/m9.figshare.9808820.v1</a>","ista":"Sigalova OM, Chaplin AV, Bochkareva O, Shelyakin PV, Filaretov VA, Akkuratov EE, Burskaia V, Gelfand MS. 2019. Additional file 17 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction, Springer Nature, <a href=\"https://doi.org/10.6084/m9.figshare.9808820.v1\">10.6084/m9.figshare.9808820.v1</a>."},"month":"09","abstract":[{"lang":"eng","text":"Summary of peripheral genesa phyletic patterns and tree concordance. 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