[{"OA_place":"publisher","has_accepted_license":"1","date_updated":"2026-02-16T12:08:59Z","external_id":{"isi":["001420194600001"],"arxiv":["2409.17241"]},"quality_controlled":"1","language":[{"iso":"eng"}],"intvolume":" 694","publication_identifier":{"issn":["0004-6361"],"eissn":["1432-0746"]},"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"date_created":"2025-03-02T23:01:54Z","file_date_updated":"2025-03-04T09:29:01Z","department":[{"_id":"JoMa"}],"article_number":"A178","doi":"10.1051/0004-6361/202452363","publisher":"EDP Sciences","day":"12","type":"journal_article","related_material":{"link":[{"relation":"software","url":" https://github.com/astroalba/fresco"}]},"citation":{"short":"A. Covelo-Paz, E. Giovinazzo, P.A. Oesch, R.A. Meyer, A. Weibel, G. Brammer, Y. Fudamoto, J. Kerutt, J. Lin, J. Matharu, R.P. Naidu, A. Velichko, V. Bollo, R. Bouwens, J. Chisholm, G.D. Illingworth, I. Kramarenko, D. Magee, M. Maseda, J.J. Matthee, E. Nelson, N. Reddy, D. Schaerer, M. Stefanon, M. Xiao, Astronomy & Astrophysics 694 (2025).","ieee":"A. Covelo-Paz et al., “An Hα view of galaxy buildup in the first 2 Gyr: Luminosity functions at z ∼ 4−6.5 from NIRCam/grism spectroscopy,” Astronomy & Astrophysics, vol. 694. EDP Sciences, 2025.","apa":"Covelo-Paz, A., Giovinazzo, E., Oesch, P. A., Meyer, R. A., Weibel, A., Brammer, G., … Xiao, M. (2025). An Hα view of galaxy buildup in the first 2 Gyr: Luminosity functions at z ∼ 4−6.5 from NIRCam/grism spectroscopy. Astronomy & Astrophysics. EDP Sciences. https://doi.org/10.1051/0004-6361/202452363","ista":"Covelo-Paz A, Giovinazzo E, Oesch PA, Meyer RA, Weibel A, Brammer G, Fudamoto Y, Kerutt J, Lin J, Matharu J, Naidu RP, Velichko A, Bollo V, Bouwens R, Chisholm J, Illingworth GD, Kramarenko I, Magee D, Maseda M, Matthee JJ, Nelson E, Reddy N, Schaerer D, Stefanon M, Xiao M. 2025. An Hα view of galaxy buildup in the first 2 Gyr: Luminosity functions at z ∼ 4−6.5 from NIRCam/grism spectroscopy. Astronomy & Astrophysics. 694, A178.","mla":"Covelo-Paz, Alba, et al. “An Hα View of Galaxy Buildup in the First 2 Gyr: Luminosity Functions at z ∼ 4−6.5 from NIRCam/Grism Spectroscopy.” Astronomy & Astrophysics, vol. 694, A178, EDP Sciences, 2025, doi:10.1051/0004-6361/202452363.","ama":"Covelo-Paz A, Giovinazzo E, Oesch PA, et al. An Hα view of galaxy buildup in the first 2 Gyr: Luminosity functions at z ∼ 4−6.5 from NIRCam/grism spectroscopy. Astronomy & Astrophysics. 2025;694. doi:10.1051/0004-6361/202452363","chicago":"Covelo-Paz, Alba, Emma Giovinazzo, Pascal A. Oesch, Romain A. Meyer, Andrea Weibel, Gabriel Brammer, Yoshinobu Fudamoto, et al. “An Hα View of Galaxy Buildup in the First 2 Gyr: Luminosity Functions at z ∼ 4−6.5 from NIRCam/Grism Spectroscopy.” Astronomy & Astrophysics. EDP Sciences, 2025. https://doi.org/10.1051/0004-6361/202452363."},"volume":694,"publication":"Astronomy & Astrophysics","OA_type":"diamond","ddc":["520"],"arxiv":1,"acknowledgement":"This work is based on observations made with the NASA/ESA/CSA James Webb Space Telescope. The data were obtained from the Mikulski Archive for Space Telescopes at the Space Telescope Science Institute, which is operated by the Association of Universities for Research in Astronomy, Inc., under NASA contract NAS 5-03127 for JWST. These observations are associated with program Nos. 1895 and 3577. The authors sincerely thank the CONGRESS team (PIs: Egami & Sun) for developing their observing program with a zero-exclusive-access period. We thank Aswin Vijayan and Harley Katz for their help in analyzing the simulation data from FLARES and SPHINX. This work has received funding from the Swiss State Secretariat for Education, Research, and Innovation (SERI) under contract number MB22.00072, as well as from the Swiss National Science Foundation (SNSF) through project grant 200020_207349. The Cosmic Dawn Center (DAWN) is funded by the Danish National Research Foundation under grant DNRF140. Support for program #1895 was provided by NASA through a grant from the Space Telescope Science Institute, which is operated by the Association of Universities for Research in Astronomy, Inc., under NASA contract NAS 5-03127. Support for this work for RPN was provided by NASA through the NASA Hubble Fellowship grant HST-HF2-51515.001-A awarded by the Space Telescope Science Institute, which is operated by the Association of Universities for Research in Astronomy, Incorporated, under NASA contract NAS5-26555. MS acknowledges support from the European Research Commission Consolidator Grant 101088789 (SFEER), from the CIDEGENT/2021/059 grant by Generalitat Valenciana, and from project PID2023-149420NB-I00 funded by MICIU/AEI/10.13039/501100011033 and by ERDF/EU.","date_published":"2025-02-12T00:00:00Z","abstract":[{"text":"The Hα nebular emission line is an optimal tracer for recent star formation in galaxies. With the advent of JWST, this line has recently become observable at z > 3 for the first time. We present a catalog of 1050 Hα emitters at 3.7 < z < 6.7 in the GOODS fields obtained from a blind search in JWST NIRCam/grism data. We made use of the FRESCO survey’s 124 arcmin2 of observations in GOODS-North and GOODS-South with the F444W filter, probing Hα at 4.9 < z < 6.7, and the CONGRESS survey’s 62 arcmin2 of observations in GOODS-North with F356W, probing Hα at 3.8 < z < 5.1. We found an overdensity with 98 sources at z ∼ 4.4 in GOODS-N, and confirmed previously reported overdensities at z ∼ 5.2 in GOODS-N and at z ∼ 5.4 and z ∼ 5.9 in GOODS-S. We computed the observed Hα luminosity functions (LFs) in three bins centered at z ∼ 4.45, 5.30, and 6.15, which are the first such measurements at z > 3 obtained based purely on spectroscopic data, robustly tracing galaxy star formation rates (SFRs) beyond the peak of the cosmic star formation history. We compared our results with theoretical predictions from three different simulations and found good agreement at z ∼ 4 − 6. The UV LFs of this spectroscopically confirmed sample are in good agreement with pre-JWST measurements obtained with photometrically selected objects. Finally, we derived SFR functions and integrated them to compute the evolution of the cosmic SFR densities across z ∼ 4 − 6, finding values in good agreement with recent UV estimates from Lyman-break galaxies, which imply a continuous decrease in SFR density by a factor of three over z ∼ 4 to z ∼ 6. Our work shows the power of NIRCam grism observations to efficiently provide new tests for early galaxy formation models based on emission line statistics.","lang":"eng"}],"scopus_import":"1","status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","isi":1,"file":[{"content_type":"application/pdf","access_level":"open_access","date_created":"2025-03-04T09:29:01Z","creator":"dernst","file_id":"19285","file_size":1865856,"relation":"main_file","success":1,"checksum":"b1e74644a0cd37550e9a553f8675c93f","date_updated":"2025-03-04T09:29:01Z","file_name":"2025_AstronomyAstrophysics_CoveloPaz.pdf"}],"oa":1,"publication_status":"published","article_type":"original","author":[{"last_name":"Covelo-Paz","full_name":"Covelo-Paz, Alba","first_name":"Alba"},{"last_name":"Giovinazzo","full_name":"Giovinazzo, Emma","first_name":"Emma"},{"last_name":"Oesch","first_name":"Pascal A.","full_name":"Oesch, Pascal A."},{"last_name":"Meyer","full_name":"Meyer, Romain A.","first_name":"Romain A."},{"first_name":"Andrea","full_name":"Weibel, Andrea","last_name":"Weibel"},{"first_name":"Gabriel","full_name":"Brammer, Gabriel","last_name":"Brammer"},{"first_name":"Yoshinobu","full_name":"Fudamoto, Yoshinobu","last_name":"Fudamoto"},{"full_name":"Kerutt, Josephine","first_name":"Josephine","last_name":"Kerutt"},{"full_name":"Lin, Jamie","first_name":"Jamie","last_name":"Lin"},{"first_name":"Jasleen","full_name":"Matharu, Jasleen","last_name":"Matharu"},{"first_name":"Rohan P.","full_name":"Naidu, Rohan P.","last_name":"Naidu"},{"last_name":"Velichko","full_name":"Velichko, Anna","first_name":"Anna"},{"first_name":"Victoria","full_name":"Bollo, Victoria","last_name":"Bollo"},{"last_name":"Bouwens","first_name":"Rychard","full_name":"Bouwens, Rychard"},{"full_name":"Chisholm, John","first_name":"John","last_name":"Chisholm"},{"last_name":"Illingworth","first_name":"Garth D.","full_name":"Illingworth, Garth D."},{"full_name":"Kramarenko, Ivan","id":"9a9394cb-3200-11ee-973b-f5ba2a8b16e4","first_name":"Ivan","last_name":"Kramarenko","orcid":"0000-0001-5346-6048"},{"first_name":"Daniel","full_name":"Magee, Daniel","last_name":"Magee"},{"first_name":"Michael","full_name":"Maseda, Michael","last_name":"Maseda"},{"orcid":"0000-0003-2871-127X","last_name":"Matthee","id":"7439a258-f3c0-11ec-9501-9df22fe06720","full_name":"Matthee, Jorryt J","first_name":"Jorryt J"},{"first_name":"Erica","full_name":"Nelson, Erica","last_name":"Nelson"},{"last_name":"Reddy","first_name":"Naveen","full_name":"Reddy, Naveen"},{"first_name":"Daniel","full_name":"Schaerer, Daniel","last_name":"Schaerer"},{"last_name":"Stefanon","first_name":"Mauro","full_name":"Stefanon, Mauro"},{"last_name":"Xiao","first_name":"Mengyuan","full_name":"Xiao, Mengyuan"}],"title":"An Hα view of galaxy buildup in the first 2 Gyr: Luminosity functions at z ∼ 4−6.5 from NIRCam/grism spectroscopy","_id":"19284","year":"2025","oa_version":"Published Version","month":"02","article_processing_charge":"No"},{"article_processing_charge":"Yes (in subscription journal)","month":"08","_id":"19363","year":"2025","oa_version":"Published Version","title":"Averages of multiplicative functions along equidistributed sequences","publication_status":"published","article_type":"original","author":[{"last_name":"Chan","orcid":"0000-0001-8467-4106","first_name":"Yik Tung","id":"c4c0afc8-9262-11ed-9231-d8b0bc743af1","full_name":"Chan, Yik Tung"},{"full_name":"Koymans, Peter","first_name":"Peter","last_name":"Koymans"},{"last_name":"Pagano","first_name":"Carlo","full_name":"Pagano, Carlo"},{"last_name":"Sofos","full_name":"Sofos, Efthymios","first_name":"Efthymios"}],"isi":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file":[{"checksum":"752c407eb186d391380b10a7505f66cf","success":1,"file_name":"2025_JourNumberTheory_Chan.pdf","date_updated":"2025-12-30T08:05:42Z","date_created":"2025-12-30T08:05:42Z","creator":"dernst","access_level":"open_access","content_type":"application/pdf","relation":"main_file","file_size":685204,"file_id":"20889"}],"oa":1,"date_published":"2025-08-01T00:00:00Z","abstract":[{"text":"For a general family of non-negative functions matching upper and lower bounds are established for their average over the values of any equidistributed sequence.","lang":"eng"}],"scopus_import":"1","status":"public","OA_type":"hybrid","ddc":["510"],"publication":"Journal of Number Theory","citation":{"chicago":"Chan, Stephanie, Peter Koymans, Carlo Pagano, and Efthymios Sofos. “Averages of Multiplicative Functions along Equidistributed Sequences.” Journal of Number Theory. Elsevier, 2025. https://doi.org/10.1016/j.jnt.2025.01.005.","ama":"Chan S, Koymans P, Pagano C, Sofos E. Averages of multiplicative functions along equidistributed sequences. Journal of Number Theory. 2025;273:1-36. doi:10.1016/j.jnt.2025.01.005","ieee":"S. Chan, P. Koymans, C. Pagano, and E. Sofos, “Averages of multiplicative functions along equidistributed sequences,” Journal of Number Theory, vol. 273. Elsevier, pp. 1–36, 2025.","apa":"Chan, S., Koymans, P., Pagano, C., & Sofos, E. (2025). Averages of multiplicative functions along equidistributed sequences. Journal of Number Theory. Elsevier. https://doi.org/10.1016/j.jnt.2025.01.005","mla":"Chan, Stephanie, et al. “Averages of Multiplicative Functions along Equidistributed Sequences.” Journal of Number Theory, vol. 273, Elsevier, 2025, pp. 1–36, doi:10.1016/j.jnt.2025.01.005.","ista":"Chan S, Koymans P, Pagano C, Sofos E. 2025. Averages of multiplicative functions along equidistributed sequences. Journal of Number Theory. 273, 1–36.","short":"S. Chan, P. Koymans, C. Pagano, E. Sofos, Journal of Number Theory 273 (2025) 1–36."},"volume":273,"publisher":"Elsevier","doi":"10.1016/j.jnt.2025.01.005","day":"01","page":"1-36","type":"journal_article","file_date_updated":"2025-12-30T08:05:42Z","date_created":"2025-03-09T23:01:26Z","department":[{"_id":"TiBr"}],"PlanS_conform":"1","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"language":[{"iso":"eng"}],"quality_controlled":"1","intvolume":" 273","publication_identifier":{"issn":["0022-314X"]},"OA_place":"publisher","has_accepted_license":"1","date_updated":"2025-12-30T08:06:16Z","corr_author":"1","external_id":{"isi":["001444208500001"]}},{"title":"MUSEQuBES: Connecting H i Absorption with Lyα emitters at z ≈ 3.3","oa_version":"Published Version","year":"2025","issue":"2","_id":"19365","month":"02","article_processing_charge":"Yes","acknowledgement":"We would like to thank the anonymous referee for useful comments. We thank Marijke Segers, Lorrie Straka, and Monica Turner for their early contributions to the MUSEQuBES project. We thank Raghunathan Srianand for useful suggestions. E.B. thanks Labanya Kumar Guha and Yucheng Guo for helpful discussions. S.C. gratefully acknowledges the fund support from the European Research Council (ERC).\r\n\r\nSoftware: NumPy (C. R. Harris et al. 2020), SciPy (P. Virtanen et al. 2020), Matplotlib (J. D. Hunter 2007), and AstroPy (Astropy Collaboration et al. 2013, 2018).","ddc":["520"],"OA_type":"gold","status":"public","abstract":[{"text":"We present a comprehensive analysis of H i absorption around 96 Lyα emitters (LAEs) at z ≈ 3.3 (median Lyα luminosity ≈1042 erg s−1). These LAEs were identified within eight MUSE fields, each (math. formular) on the sky and centered on a bright background quasar, as part of the MUSEQuBES survey. Using Voigt profile fitting for all H i absorbers detected within ±500 km s−1 of these LAEs, we compiled a catalog of 800 H i absorption components. Our analysis shows that H i absorption is enhanced near the LAEs compared to the intergalactic medium. However, no trend is found between the column densities of H i absorbers and their impact parameters from the LAEs (spanning ≈54–260 pkpc). Additionally, all galaxies associated with Lyman-limit systems have impact parameters >50 pkpc from the quasar sightlines, suggesting that true absorber hosts may be too faint to detect. The LAEs show an overall H i covering fraction (fc(H i)) of ≈88% for a threshold (math. formular) (H i) = 15. Notably, at the same threshold, the LAEs in pairs/groups exhibit a 100% H i covering fraction out to ≈250 pkpc. In contrast, isolated LAEs consistently show a lower fc(H i) of ≈80%. This environmental influence on fc(H i) is also evident up to ≈300 km s−1 in differential bins of line-of-sight velocity. We find an anticorrelation between fc(H i) and the equivalent width of rest-frame Lyα emission (EW0). Based on the Lyα shell model, this could imply that gas-rich galaxies tend to reside in gas-rich environments or that the LAEs with higher EW0 are more efficient at ionizing their surrounding medium.","lang":"eng"}],"scopus_import":"1","date_published":"2025-02-20T00:00:00Z","oa":1,"file":[{"file_name":"2025_AstrophysicalJour_Banerjee.pdf","date_updated":"2025-03-10T11:54:52Z","checksum":"1d33a8eb59f42a0c7a943c8859e9b883","success":1,"relation":"main_file","file_size":1194131,"file_id":"19379","date_created":"2025-03-10T11:54:52Z","creator":"dernst","access_level":"open_access","content_type":"application/pdf"}],"isi":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","author":[{"first_name":"Eshita","full_name":"Banerjee, Eshita","last_name":"Banerjee"},{"full_name":"Muzahid, Sowgat","first_name":"Sowgat","last_name":"Muzahid"},{"first_name":"Joop","full_name":"Schaye, Joop","last_name":"Schaye"},{"first_name":"Jérémy","full_name":"Blaizot, Jérémy","last_name":"Blaizot"},{"first_name":"Nicolas","full_name":"Bouché, Nicolas","last_name":"Bouché"},{"last_name":"Cantalupo","first_name":"Sebastiano","full_name":"Cantalupo, Sebastiano"},{"last_name":"Johnson","first_name":"Sean D.","full_name":"Johnson, Sean D."},{"last_name":"Matthee","orcid":"0000-0003-2871-127X","id":"7439a258-f3c0-11ec-9501-9df22fe06720","full_name":"Matthee, Jorryt J","first_name":"Jorryt J"},{"last_name":"Verhamme","full_name":"Verhamme, Anne","first_name":"Anne"}],"publication_status":"published","article_type":"original","type":"journal_article","day":"20","publisher":"IOP Publishing","doi":"10.3847/1538-4357/ada7e9","volume":980,"DOAJ_listed":"1","citation":{"ama":"Banerjee E, Muzahid S, Schaye J, et al. MUSEQuBES: Connecting H i Absorption with Lyα emitters at z ≈ 3.3. The Astrophysical Journal. 2025;980(2). doi:10.3847/1538-4357/ada7e9","chicago":"Banerjee, Eshita, Sowgat Muzahid, Joop Schaye, Jérémy Blaizot, Nicolas Bouché, Sebastiano Cantalupo, Sean D. Johnson, Jorryt J Matthee, and Anne Verhamme. “MUSEQuBES: Connecting H i Absorption with Lyα Emitters at z ≈ 3.3.” The Astrophysical Journal. IOP Publishing, 2025. https://doi.org/10.3847/1538-4357/ada7e9.","short":"E. Banerjee, S. Muzahid, J. Schaye, J. Blaizot, N. Bouché, S. Cantalupo, S.D. Johnson, J.J. Matthee, A. Verhamme, The Astrophysical Journal 980 (2025).","ieee":"E. Banerjee et al., “MUSEQuBES: Connecting H i Absorption with Lyα emitters at z ≈ 3.3,” The Astrophysical Journal, vol. 980, no. 2. IOP Publishing, 2025.","apa":"Banerjee, E., Muzahid, S., Schaye, J., Blaizot, J., Bouché, N., Cantalupo, S., … Verhamme, A. (2025). MUSEQuBES: Connecting H i Absorption with Lyα emitters at z ≈ 3.3. The Astrophysical Journal. IOP Publishing. https://doi.org/10.3847/1538-4357/ada7e9","ista":"Banerjee E, Muzahid S, Schaye J, Blaizot J, Bouché N, Cantalupo S, Johnson SD, Matthee JJ, Verhamme A. 2025. MUSEQuBES: Connecting H i Absorption with Lyα emitters at z ≈ 3.3. The Astrophysical Journal. 980(2), 171.","mla":"Banerjee, Eshita, et al. “MUSEQuBES: Connecting H i Absorption with Lyα Emitters at z ≈ 3.3.” The Astrophysical Journal, vol. 980, no. 2, 171, IOP Publishing, 2025, doi:10.3847/1538-4357/ada7e9."},"publication":"The Astrophysical Journal","external_id":{"isi":["001421001500001"]},"date_updated":"2026-02-16T12:42:00Z","has_accepted_license":"1","OA_place":"publisher","publication_identifier":{"issn":["0004-637X"],"eissn":["1538-4357"]},"intvolume":" 980","quality_controlled":"1","language":[{"iso":"eng"}],"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"article_number":"171","department":[{"_id":"JoMa"}],"date_created":"2025-03-09T23:01:26Z","file_date_updated":"2025-03-10T11:54:52Z"},{"year":"2025","_id":"19366","oa_version":"Published Version","title":"Mastitis-related Staphylococcus aureus-derived extracellular vesicles induce a pro-inflammatory response in bovine monocyte-derived macrophages","article_processing_charge":"Yes","pmid":1,"month":"02","scopus_import":"1","date_published":"2025-02-19T00:00:00Z","abstract":[{"lang":"eng","text":"Staphylococcus aureus (S. aureus) is one of the most common causative agents of mammary gland infection and mastitis, but the specific role of S. aureus-derived extracellular vesicles (SaEVs) in mastitis has been poorly studied to date. Here, we aimed to investigate the response of bovine monocyte-derived macrophages (boMdM) to SaEVs of the genotype B (GTB) mastitis-related strain M5512B. Specifically, we evaluated the effects on the actin cytoskeleton, gene expression, and the SaEV proteomic cargo. Furthermore, we assessed to what extent the cellular and molecular response of boMdM to SaEVs differed from peripheral mononuclear blood cells (PBMCs) used for in vitro derivation of the former. We observed that SaEVs induced morphological changes in boMdM, leading to a pro-inflammatory and pyroptosis-related increased gene expression. Additionally, our study revealed that boMdM and PBMCs exhibited stimulus-specific differing responses. The proteomic analysis of SaEVs identified clusters of proteins related to virulence and antibiotic resistance, supporting the theory that S. aureus might use EVs to evade host defences and colonize the mammary gland. Our results bring new insights into how SaEVs might impact the host during an S. aureus infection, which can be useful for future S. aureus vaccine development."}],"status":"public","OA_type":"gold","acknowledgement":"The authors thank Michele Guastalla for his contributions to the boMdM analyses and Stephan Handschin from the Scientific Center for Optical and Electron Microscopy (ScopeM) of ETH Zurich for the TEM imaging. We gratefully acknowledge the Functional Genomics Center Zurich (FGCZ) for performing the mass spectrometry analysis for this study.\r\nOpen access funding provided by Swiss Federal Institute of Technology Zurich. This work was supported by basic funding from ETH Zurich.","ddc":["570"],"publication_status":"published","article_type":"original","author":[{"full_name":"Saenz-De-Juano, Mara D.","first_name":"Mara D.","last_name":"Saenz-De-Juano"},{"id":"12632ae8-799e-11ef-94a2-e5a3b5ef49e9","full_name":"Silvestrelli, Giulia","first_name":"Giulia","last_name":"Silvestrelli"},{"last_name":"Buri","first_name":"Samuel","full_name":"Buri, Samuel"},{"last_name":"Zinsli","first_name":"Léa V.","full_name":"Zinsli, Léa V."},{"full_name":"Schmelcher, Mathias","first_name":"Mathias","last_name":"Schmelcher"},{"first_name":"Susanne E.","full_name":"Ulbrich, Susanne E.","last_name":"Ulbrich"}],"file":[{"success":1,"checksum":"51b55ae299de1fa126016a11024b499a","date_updated":"2025-03-10T12:00:34Z","file_name":"2025_ScientificReports_SaenzdeJuano.pdf","content_type":"application/pdf","access_level":"open_access","creator":"dernst","date_created":"2025-03-10T12:00:34Z","file_id":"19380","file_size":2780316,"relation":"main_file"}],"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","isi":1,"oa":1,"DOAJ_listed":"1","citation":{"short":"M.D. Saenz-De-Juano, G. Silvestrelli, S. Buri, L.V. Zinsli, M. Schmelcher, S.E. Ulbrich, Scientific Reports 15 (2025) 6059.","mla":"Saenz-De-Juano, Mara D., et al. “Mastitis-Related Staphylococcus Aureus-Derived Extracellular Vesicles Induce a pro-Inflammatory Response in Bovine Monocyte-Derived Macrophages.” Scientific Reports, vol. 15, Springer Nature, 2025, p. 6059, doi:10.1038/s41598-025-90466-6.","apa":"Saenz-De-Juano, M. D., Silvestrelli, G., Buri, S., Zinsli, L. V., Schmelcher, M., & Ulbrich, S. E. (2025). Mastitis-related Staphylococcus aureus-derived extracellular vesicles induce a pro-inflammatory response in bovine monocyte-derived macrophages. Scientific Reports. Springer Nature. https://doi.org/10.1038/s41598-025-90466-6","ista":"Saenz-De-Juano MD, Silvestrelli G, Buri S, Zinsli LV, Schmelcher M, Ulbrich SE. 2025. Mastitis-related Staphylococcus aureus-derived extracellular vesicles induce a pro-inflammatory response in bovine monocyte-derived macrophages. Scientific Reports. 15, 6059.","ieee":"M. D. Saenz-De-Juano, G. Silvestrelli, S. Buri, L. V. Zinsli, M. Schmelcher, and S. E. Ulbrich, “Mastitis-related Staphylococcus aureus-derived extracellular vesicles induce a pro-inflammatory response in bovine monocyte-derived macrophages,” Scientific Reports, vol. 15. Springer Nature, p. 6059, 2025.","ama":"Saenz-De-Juano MD, Silvestrelli G, Buri S, Zinsli LV, Schmelcher M, Ulbrich SE. Mastitis-related Staphylococcus aureus-derived extracellular vesicles induce a pro-inflammatory response in bovine monocyte-derived macrophages. Scientific Reports. 2025;15:6059. doi:10.1038/s41598-025-90466-6","chicago":"Saenz-De-Juano, Mara D., Giulia Silvestrelli, Samuel Buri, Léa V. Zinsli, Mathias Schmelcher, and Susanne E. Ulbrich. “Mastitis-Related Staphylococcus Aureus-Derived Extracellular Vesicles Induce a pro-Inflammatory Response in Bovine Monocyte-Derived Macrophages.” Scientific Reports. Springer Nature, 2025. https://doi.org/10.1038/s41598-025-90466-6."},"volume":15,"page":"6059","publisher":"Springer Nature","day":"19","doi":"10.1038/s41598-025-90466-6","type":"journal_article","publication":"Scientific Reports","intvolume":" 15","language":[{"iso":"eng"}],"quality_controlled":"1","publication_identifier":{"eissn":["2045-2322"]},"date_updated":"2025-09-30T10:58:59Z","OA_place":"publisher","has_accepted_license":"1","external_id":{"pmid":["39972051"],"isi":["001426697000031"]},"file_date_updated":"2025-03-10T12:00:34Z","date_created":"2025-03-09T23:01:26Z","department":[{"_id":"LoSw"}],"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"}},{"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"date_created":"2025-03-09T23:01:27Z","file_date_updated":"2025-04-16T07:25:21Z","article_number":"kiaf055","department":[{"_id":"XiFe"}],"PlanS_conform":"1","date_updated":"2025-09-30T10:48:08Z","has_accepted_license":"1","OA_place":"publisher","external_id":{"pmid":["39938057"],"isi":["001427994500001"]},"corr_author":"1","intvolume":" 197","quality_controlled":"1","language":[{"iso":"eng"}],"publication_identifier":{"eissn":["1532-2548"]},"publication":"Plant Physiology","publisher":"Oxford University Press","day":"07","doi":"10.1093/plphys/kiaf055","type":"journal_article","citation":{"chicago":"De Jaeger-Braet, Joke G. “Arabidopsis Accessions and Their Difference in Heat Tolerance during Meiosis.” Plant Physiology. Oxford University Press, 2025. https://doi.org/10.1093/plphys/kiaf055.","ama":"De Jaeger-Braet JG. Arabidopsis accessions and their difference in heat tolerance during meiosis. Plant Physiology. 2025;197(2). doi:10.1093/plphys/kiaf055","apa":"De Jaeger-Braet, J. G. (2025). Arabidopsis accessions and their difference in heat tolerance during meiosis. Plant Physiology. Oxford University Press. https://doi.org/10.1093/plphys/kiaf055","ista":"De Jaeger-Braet JG. 2025. Arabidopsis accessions and their difference in heat tolerance during meiosis. Plant Physiology. 197(2), kiaf055.","mla":"De Jaeger-Braet, Joke G. “Arabidopsis Accessions and Their Difference in Heat Tolerance during Meiosis.” Plant Physiology, vol. 197, no. 2, kiaf055, Oxford University Press, 2025, doi:10.1093/plphys/kiaf055.","ieee":"J. G. De Jaeger-Braet, “Arabidopsis accessions and their difference in heat tolerance during meiosis,” Plant Physiology, vol. 197, no. 2. Oxford University Press, 2025.","short":"J.G. De Jaeger-Braet, Plant Physiology 197 (2025)."},"volume":197,"file":[{"file_id":"19570","file_size":320184,"relation":"main_file","content_type":"application/pdf","creator":"dernst","date_created":"2025-04-16T07:25:21Z","access_level":"open_access","file_name":"2025_PlantPhysiology_deJaegerBraet.pdf","date_updated":"2025-04-16T07:25:21Z","success":1,"checksum":"28e18fd7d00c74782f4f42501ecd4aae"}],"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","isi":1,"oa":1,"publication_status":"published","article_type":"original","author":[{"first_name":"Joke G","full_name":"De Jaeger-Braet, Joke G","id":"26bd38d3-c59a-11ee-a1af-d7a988cafcc5","last_name":"De Jaeger-Braet"}],"OA_type":"hybrid","ddc":["580"],"date_published":"2025-02-07T00:00:00Z","scopus_import":"1","status":"public","pmid":1,"month":"02","article_processing_charge":"Yes (in subscription journal)","title":"Arabidopsis accessions and their difference in heat tolerance during meiosis","year":"2025","_id":"19367","issue":"2","oa_version":"Published Version"},{"volume":61,"DOAJ_listed":"1","citation":{"ama":"Bulovic N, Johnson F, Lievens H, et al. Evaluating the performance of sentinel-1 SAR derived snow depth retrievals over the extratropical Andes cordillera. Water Resources Research. 2025;61(2). doi:10.1029/2024WR037766","chicago":"Bulovic, N., F. Johnson, H. Lievens, Thomas Shaw, J. Mcphee, S. Gascoin, M. Demuzere, and N. Mcintyre. “Evaluating the Performance of Sentinel-1 SAR Derived Snow Depth Retrievals over the Extratropical Andes Cordillera.” Water Resources Research. Wiley, 2025. https://doi.org/10.1029/2024WR037766.","short":"N. Bulovic, F. Johnson, H. Lievens, T. Shaw, J. Mcphee, S. Gascoin, M. Demuzere, N. Mcintyre, Water Resources Research 61 (2025).","mla":"Bulovic, N., et al. “Evaluating the Performance of Sentinel-1 SAR Derived Snow Depth Retrievals over the Extratropical Andes Cordillera.” Water Resources Research, vol. 61, no. 2, e2024WR037766, Wiley, 2025, doi:10.1029/2024WR037766.","ista":"Bulovic N, Johnson F, Lievens H, Shaw T, Mcphee J, Gascoin S, Demuzere M, Mcintyre N. 2025. Evaluating the performance of sentinel-1 SAR derived snow depth retrievals over the extratropical Andes cordillera. Water Resources Research. 61(2), e2024WR037766.","apa":"Bulovic, N., Johnson, F., Lievens, H., Shaw, T., Mcphee, J., Gascoin, S., … Mcintyre, N. (2025). Evaluating the performance of sentinel-1 SAR derived snow depth retrievals over the extratropical Andes cordillera. Water Resources Research. Wiley. https://doi.org/10.1029/2024WR037766","ieee":"N. Bulovic et al., “Evaluating the performance of sentinel-1 SAR derived snow depth retrievals over the extratropical Andes cordillera,” Water Resources Research, vol. 61, no. 2. Wiley, 2025."},"type":"journal_article","publisher":"Wiley","doi":"10.1029/2024WR037766","day":"01","publication":"Water Resources Research","publication_identifier":{"issn":["0043-1397"],"eissn":["1944-7973"]},"intvolume":" 61","quality_controlled":"1","language":[{"iso":"eng"}],"external_id":{"isi":["001419509100001"]},"date_updated":"2025-09-30T10:48:43Z","OA_place":"publisher","has_accepted_license":"1","article_number":"e2024WR037766","department":[{"_id":"FrPe"}],"PlanS_conform":"1","date_created":"2025-03-09T23:01:27Z","file_date_updated":"2025-03-10T08:16:05Z","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"oa_version":"Published Version","year":"2025","_id":"19369","issue":"2","title":"Evaluating the performance of sentinel-1 SAR derived snow depth retrievals over the extratropical Andes cordillera","article_processing_charge":"Yes (via OA deal)","month":"02","status":"public","abstract":[{"lang":"eng","text":"Monitoring and estimating mountain snowpack mass over regional scales is still a challenge because of the inadequacy of observational networks in capturing spatiotemporal variability, and limitations in remotely sensed retrievals. Recent work using C-band synthetic aperture radar (SAR) backscatter data from the Sentinel-1 satellite mission has shown good promise for tracking mountain snow depth over specific northern hemisphere ranges, although the broader potential is still unknown. Here, we extend the new Sentinel-1 based modeling framework beyond the northern hemisphere by only utilizing globally available input data, and evaluate different model parametrization and model performance over the Chilean and Argentine Andes mountains, which contain the largest mountain snowpack in the southern hemisphere. The accuracy of Sentinel-1 snow depth estimates is evaluated against an extensive in situ network available for the region. Satellite-retrieved snow depth is found to have poorer performance across the Andes than observed for northern hemisphere mountain ranges because of greater sensitivity to evergreen forest cover and shallower snowpacks. The algorithm does offer some skill but performance is variable and site-dependent. Algorithm performance is best over regions with limited evergreen forest cover (<15%) and snow depths greater than 0.75 m, although the retrievals over-estimate snow depth across most sites. Systemic errors for specific snow classes and across different snow depths are shown, highlighting specific areas in need of further investigation and development."}],"date_published":"2025-02-01T00:00:00Z","scopus_import":"1","acknowledgement":"This research was supported by the University of Queensland's PhD scholarship program, the Australian Research Council under the Future Fellowship program (Project ID:FT140100977), and the Sustainable Minerals Institute International Centre of Excellence (Chile). Fiona Johnson is supported by a UNSW Scientia Funding and ARC Training Centre in Data Analytics for Resources and Environments(Grant IC190100031). The authors also thank Liliana Pagliero, Maxi Viale and Rodrigo Correa for their support with obtaining the DGA, SNIH, and Codelco data sets, and the PlanetLabs research and education initiative for free imagery. Open access publishing facilitated by The University of Queensland, as part of the Wiley ‐ The University of Queensland agreement via the Council of Australian University Librarians.","ddc":["550"],"OA_type":"gold","author":[{"last_name":"Bulovic","first_name":"N.","full_name":"Bulovic, N."},{"last_name":"Johnson","full_name":"Johnson, F.","first_name":"F."},{"first_name":"H.","full_name":"Lievens, H.","last_name":"Lievens"},{"last_name":"Shaw","orcid":"0000-0001-7640-6152","id":"3caa3f91-1f03-11ee-96ce-e0e553054d6e","full_name":"Shaw, Thomas","first_name":"Thomas"},{"full_name":"Mcphee, J.","first_name":"J.","last_name":"Mcphee"},{"first_name":"S.","full_name":"Gascoin, S.","last_name":"Gascoin"},{"last_name":"Demuzere","full_name":"Demuzere, M.","first_name":"M."},{"first_name":"N.","full_name":"Mcintyre, N.","last_name":"Mcintyre"}],"article_type":"original","publication_status":"published","oa":1,"file":[{"date_updated":"2025-03-10T08:16:05Z","file_name":"2025_WaterResourcesResearch_Bulovic.pdf","checksum":"8ff09dcae2e508fd72aee80300fc40e2","success":1,"file_size":6362563,"relation":"main_file","file_id":"19377","access_level":"open_access","creator":"dernst","date_created":"2025-03-10T08:16:05Z","content_type":"application/pdf"}],"isi":1,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345"},{"title":"Reduced efficacy of selection on a young Z chromosome region of schistosoma japonicum","year":"2025","issue":"2","_id":"19370","oa_version":"Published Version","pmid":1,"month":"02","article_processing_charge":"Yes","OA_type":"gold","acknowledgement":"The authors would like to thank three anonymous reviewers for comments and suggestions. We are also grateful to Christelle Fraïsse, Marwan Elkrewi, and Filip Ruzicka for the help in this project.","ddc":["570"],"date_published":"2025-02-01T00:00:00Z","abstract":[{"lang":"eng","text":"Sex-linked and autosomal loci experience different selective pressures and evolutionary dynamics. X (or Z) chromosomes are often hemizygous in males (or females), as Y (or W) chromosomes often degenerate. Such hemizygous regions can be under greater efficacy of selection, as recessive mutations are immediately exposed to selection in the heterogametic sex leading to faster adaptation and faster divergence on the X chromosome (the so-called Faster-X or Faster-Z effect). However, in young nonrecombining regions, Y/W chromosomes often have many functional genes, and many X/Z-linked loci are therefore diploid. The sheltering of recessive mutations on the X/Z by the Y/W homolog is expected to drive slower adaptation for diploid X/Z loci, i.e. a reduction in the efficacy of selection. While the Faster-X effect has been studied extensively, much less is known empirically about the evolutionary dynamics of diploid X or Z chromosomes. Here, we took advantage of published population genomic data in the female-heterogametic human parasite Schistosoma japonicum to characterize the gene content and diversity levels of the diploid and hemizygous regions of the Z chromosome. We used different metrics of selective pressures acting on genes to test for differences in the efficacy of selection in hemizygous and diploid Z regions, relative to autosomes. We found consistent patterns suggesting reduced Ne, and reduced efficacy of purifying selection, on both hemizygous and diploid Z regions. Moreover, relaxed selection was particularly pronounced for female-biased genes on the diploid Z, as predicted by recent theoretical work."}],"scopus_import":"1","status":"public","file":[{"date_updated":"2025-03-10T08:25:59Z","file_name":"2025_GBE_Mrnjavac.pdf","checksum":"e3aa993e3d6dad10cb806c243fa57408","success":1,"relation":"main_file","file_size":768371,"file_id":"19378","access_level":"open_access","creator":"dernst","date_created":"2025-03-10T08:25:59Z","content_type":"application/pdf"}],"isi":1,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","oa":1,"publication_status":"published","article_type":"original","author":[{"first_name":"Andrea","id":"353FAC84-AE61-11E9-8BFC-00D3E5697425","full_name":"Mrnjavac, Andrea","last_name":"Mrnjavac"},{"first_name":"Beatriz","id":"49E1C5C6-F248-11E8-B48F-1D18A9856A87","full_name":"Vicoso, Beatriz","orcid":"0000-0002-4579-8306","last_name":"Vicoso"}],"publisher":"Oxford University Press","day":"01","doi":"10.1093/gbe/evaf021","related_material":{"link":[{"relation":"software","url":"https://git.ista.ac.at/amrnjava/schistosomes_slower_z"}],"record":[{"relation":"earlier_version","id":"18549","status":"public"}]},"type":"journal_article","citation":{"apa":"Mrnjavac, A., & Vicoso, B. (2025). Reduced efficacy of selection on a young Z chromosome region of schistosoma japonicum. Genome Biology and Evolution. Oxford University Press. https://doi.org/10.1093/gbe/evaf021","ista":"Mrnjavac A, Vicoso B. 2025. Reduced efficacy of selection on a young Z chromosome region of schistosoma japonicum. Genome Biology and Evolution. 17(2), evaf021.","mla":"Mrnjavac, Andrea, and Beatriz Vicoso. “Reduced Efficacy of Selection on a Young Z Chromosome Region of Schistosoma Japonicum.” Genome Biology and Evolution, vol. 17, no. 2, evaf021, Oxford University Press, 2025, doi:10.1093/gbe/evaf021.","ieee":"A. Mrnjavac and B. Vicoso, “Reduced efficacy of selection on a young Z chromosome region of schistosoma japonicum,” Genome Biology and Evolution, vol. 17, no. 2. Oxford University Press, 2025.","short":"A. Mrnjavac, B. Vicoso, Genome Biology and Evolution 17 (2025).","chicago":"Mrnjavac, Andrea, and Beatriz Vicoso. “Reduced Efficacy of Selection on a Young Z Chromosome Region of Schistosoma Japonicum.” Genome Biology and Evolution. Oxford University Press, 2025. https://doi.org/10.1093/gbe/evaf021.","ama":"Mrnjavac A, Vicoso B. Reduced efficacy of selection on a young Z chromosome region of schistosoma japonicum. Genome Biology and Evolution. 2025;17(2). doi:10.1093/gbe/evaf021"},"volume":17,"publication":"Genome Biology and Evolution","date_updated":"2025-09-30T10:49:17Z","OA_place":"publisher","has_accepted_license":"1","external_id":{"pmid":["39913672"],"isi":["001423671400001"]},"corr_author":"1","intvolume":" 17","language":[{"iso":"eng"}],"quality_controlled":"1","publication_identifier":{"eissn":["1759-6653"]},"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"date_created":"2025-03-09T23:01:27Z","file_date_updated":"2025-03-10T08:25:59Z","article_number":"evaf021","department":[{"_id":"BeVi"}]},{"publication":"SciPost Physics","volume":18,"citation":{"ista":"Suchorowski M, Badamshina A, Lemeshko M, Tomza M, Volosniev A. 2025. Quantum rotor in a two-dimensional mesoscopic Bose gas. SciPost Physics. 18(2), 059.","mla":"Suchorowski, Michał, et al. “Quantum Rotor in a Two-Dimensional Mesoscopic Bose Gas.” SciPost Physics, vol. 18, no. 2, 059, SciPost Foundation, 2025, doi:10.21468/SciPostPhys.18.2.059.","apa":"Suchorowski, M., Badamshina, A., Lemeshko, M., Tomza, M., & Volosniev, A. (2025). Quantum rotor in a two-dimensional mesoscopic Bose gas. SciPost Physics. SciPost Foundation. https://doi.org/10.21468/SciPostPhys.18.2.059","ieee":"M. Suchorowski, A. Badamshina, M. Lemeshko, M. Tomza, and A. Volosniev, “Quantum rotor in a two-dimensional mesoscopic Bose gas,” SciPost Physics, vol. 18, no. 2. SciPost Foundation, 2025.","short":"M. Suchorowski, A. Badamshina, M. Lemeshko, M. Tomza, A. Volosniev, SciPost Physics 18 (2025).","chicago":"Suchorowski, Michał, Alina Badamshina, Mikhail Lemeshko, Michał Tomza, and Artem Volosniev. “Quantum Rotor in a Two-Dimensional Mesoscopic Bose Gas.” SciPost Physics. SciPost Foundation, 2025. https://doi.org/10.21468/SciPostPhys.18.2.059.","ama":"Suchorowski M, Badamshina A, Lemeshko M, Tomza M, Volosniev A. Quantum rotor in a two-dimensional mesoscopic Bose gas. SciPost Physics. 2025;18(2). doi:10.21468/SciPostPhys.18.2.059"},"DOAJ_listed":"1","type":"journal_article","ec_funded":1,"publisher":"SciPost Foundation","day":"19","doi":"10.21468/SciPostPhys.18.2.059","article_number":"059","department":[{"_id":"MiLe"}],"file_date_updated":"2025-03-10T07:08:21Z","date_created":"2025-03-09T23:01:28Z","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"publication_identifier":{"eissn":["2542-4653"]},"intvolume":" 18","language":[{"iso":"eng"}],"quality_controlled":"1","external_id":{"arxiv":["2407.06046"]},"corr_author":"1","date_updated":"2025-04-14T07:48:55Z","has_accepted_license":"1","OA_place":"publisher","article_processing_charge":"Yes","month":"02","oa_version":"Published Version","year":"2025","_id":"19371","issue":"2","title":"Quantum rotor in a two-dimensional mesoscopic Bose gas","author":[{"first_name":"Michał","full_name":"Suchorowski, Michał","last_name":"Suchorowski"},{"full_name":"Badamshina, Alina","first_name":"Alina","last_name":"Badamshina"},{"id":"37CB05FA-F248-11E8-B48F-1D18A9856A87","full_name":"Lemeshko, Mikhail","first_name":"Mikhail","last_name":"Lemeshko","orcid":"0000-0002-6990-7802"},{"last_name":"Tomza","full_name":"Tomza, Michał","first_name":"Michał"},{"id":"37D278BC-F248-11E8-B48F-1D18A9856A87","full_name":"Volosniev, Artem","first_name":"Artem","orcid":"0000-0003-0393-5525","last_name":"Volosniev"}],"project":[{"_id":"2688CF98-B435-11E9-9278-68D0E5697425","grant_number":"801770","call_identifier":"H2020","name":"Angulon: physics and applications of a new quasiparticle"}],"publication_status":"published","article_type":"original","oa":1,"file":[{"file_id":"19376","file_size":1124066,"relation":"main_file","content_type":"application/pdf","creator":"dernst","date_created":"2025-03-10T07:08:21Z","access_level":"open_access","file_name":"2025_SciPostPhys_Suchorowski.pdf","date_updated":"2025-03-10T07:08:21Z","success":1,"checksum":"7bed8c68c36d495540491bd0579e33e4"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","date_published":"2025-02-19T00:00:00Z","scopus_import":"1","abstract":[{"text":"We investigate a molecular quantum rotor in a two-dimensional Bose-Einstein condensate. The focus is on studying the angulon quasiparticle concept in the crossover from few- to many-body physics. To this end, we formulate the problem in real space and solve it with a mean-field approach in the frame co-rotating with the impurity. We show that the system starts to feature angulon characteristics when the size of the bosonic cloud is large enough to screen the rotor. More importantly, we demonstrate the departure from the angulon picture for large system sizes or large angular momenta where the properties of the system are determined by collective excitations of the Bose gas.","lang":"eng"}],"acknowledgement":"We thank Fabian Brauneis, Arthur Christianen and Pietro Massignan for useful discussions. M. S. and A. G. V. would like to thank the Institut Henri Poincaré\r\n(UAR 839 CNRS-Sorbonne Université) and the LabEx CARMIN (ANR-10-LABX-59-01) for\r\ntheir support and hospitality during the final stages of completion of this work. M.S.\r\nand M.T. acknowledge the National Science Centre, Poland, within Sonata Bis Grant No.\r\n2020/38/E/ST2/00564. M.L. acknowledges support by the European Research Council (ERC)\r\nStarting Grant No.801770 (ANGULON). M.S. acknowledges the National Science Centre,\r\nPoland, within Preludium Grant No. 2023/49/N/ST2/03820. We gratefully acknowledge\r\nPoland’s high-performance Infrastructure PLGrid ACK Cyfronet AGH for providing computer\r\nfacilities and support within computational grant no PLG/2023/016878.","arxiv":1,"ddc":["530"],"OA_type":"gold"},{"publication_identifier":{"eissn":["2690-1005"],"issn":["2690-0998"]},"language":[{"iso":"eng"}],"quality_controlled":"1","intvolume":" 6","corr_author":"1","external_id":{"arxiv":["2306.16373"]},"OA_place":"repository","date_updated":"2025-03-10T07:19:02Z","department":[{"_id":"RoSe"}],"date_created":"2025-03-09T23:01:28Z","volume":6,"citation":{"short":"M. Brooks, D.J. Mitrouskas, Probability and Mathematical Physics 6 (2025) 281–325.","apa":"Brooks, M., & Mitrouskas, D. J. (2025). Asymptotic series for low-energy excitations of the Fröhlich polaron at strong coupling. Probability and Mathematical Physics. Mathematical Sciences Publishers. https://doi.org/10.2140/pmp.2025.6.281","mla":"Brooks, Morris, and David Johannes Mitrouskas. “ Asymptotic Series for Low-Energy Excitations of the Fröhlich Polaron at Strong Coupling.” Probability and Mathematical Physics, vol. 6, no. 1, Mathematical Sciences Publishers, 2025, pp. 281–325, doi:10.2140/pmp.2025.6.281.","ista":"Brooks M, Mitrouskas DJ. 2025. Asymptotic series for low-energy excitations of the Fröhlich polaron at strong coupling. Probability and Mathematical Physics. 6(1), 281–325.","ieee":"M. Brooks and D. J. Mitrouskas, “ Asymptotic series for low-energy excitations of the Fröhlich polaron at strong coupling,” Probability and Mathematical Physics, vol. 6, no. 1. Mathematical Sciences Publishers, pp. 281–325, 2025.","ama":"Brooks M, Mitrouskas DJ. Asymptotic series for low-energy excitations of the Fröhlich polaron at strong coupling. Probability and Mathematical Physics. 2025;6(1):281-325. doi:10.2140/pmp.2025.6.281","chicago":"Brooks, Morris, and David Johannes Mitrouskas. “ Asymptotic Series for Low-Energy Excitations of the Fröhlich Polaron at Strong Coupling.” Probability and Mathematical Physics. Mathematical Sciences Publishers, 2025. https://doi.org/10.2140/pmp.2025.6.281."},"type":"journal_article","day":"23","publisher":"Mathematical Sciences Publishers","doi":"10.2140/pmp.2025.6.281","page":"281-325","publication":"Probability and Mathematical Physics","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2306.16373"}],"status":"public","date_published":"2025-02-23T00:00:00Z","abstract":[{"lang":"eng","text":"We consider the confined Fröhlich polaron and establish an asymptotic series for the low-energy eigenvalues in negative powers of the coupling constant. The coefficients of the series are derived through a two-fold perturbation approach, involving expansions around the electron Pekar minimizer and the excitations of the quantum field."}],"scopus_import":"1","arxiv":1,"acknowledgement":"M.B. gratefully acknowledges funding from the ERC Advanced Grant ERC-AdG CLaQS, grant agreement n. 83478.","OA_type":"green","author":[{"orcid":"0000-0002-6249-0928","last_name":"Brooks","id":"B7ECF9FC-AA38-11E9-AC9A-0930E6697425","full_name":"Brooks, Morris","first_name":"Morris"},{"first_name":"David Johannes","id":"cbddacee-2b11-11eb-a02e-a2e14d04e52d","full_name":"Mitrouskas, David Johannes","last_name":"Mitrouskas"}],"publication_status":"published","article_type":"original","oa":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Preprint","issue":"1","_id":"19372","year":"2025","title":" Asymptotic series for low-energy excitations of the Fröhlich polaron at strong coupling","article_processing_charge":"No","month":"02"},{"publication":"Nature Physics","volume":21,"citation":{"ama":"Xue S, Yang Q, Liberali P, Hannezo EB. Mechanochemical bistability of intestinal organoids enables robust morphogenesis. Nature Physics. 2025;21. doi:10.1038/s41567-025-02792-1","chicago":"Xue, Shi-lei, Qiutan Yang, Prisca Liberali, and Edouard B Hannezo. “Mechanochemical Bistability of Intestinal Organoids Enables Robust Morphogenesis.” Nature Physics. Springer Nature, 2025. https://doi.org/10.1038/s41567-025-02792-1.","short":"S. Xue, Q. Yang, P. Liberali, E.B. Hannezo, Nature Physics 21 (2025).","apa":"Xue, S., Yang, Q., Liberali, P., & Hannezo, E. B. (2025). Mechanochemical bistability of intestinal organoids enables robust morphogenesis. Nature Physics. Springer Nature. https://doi.org/10.1038/s41567-025-02792-1","mla":"Xue, Shi-lei, et al. “Mechanochemical Bistability of Intestinal Organoids Enables Robust Morphogenesis.” Nature Physics, vol. 21, 078104, Springer Nature, 2025, doi:10.1038/s41567-025-02792-1.","ista":"Xue S, Yang Q, Liberali P, Hannezo EB. 2025. Mechanochemical bistability of intestinal organoids enables robust morphogenesis. Nature Physics. 21, 078104.","ieee":"S. Xue, Q. Yang, P. Liberali, and E. B. Hannezo, “Mechanochemical bistability of intestinal organoids enables robust morphogenesis,” Nature Physics, vol. 21. Springer Nature, 2025."},"type":"journal_article","ec_funded":1,"day":"28","doi":"10.1038/s41567-025-02792-1","publisher":"Springer Nature","article_number":"078104","PlanS_conform":"1","department":[{"_id":"EdHa"}],"file_date_updated":"2025-08-05T12:12:03Z","date_created":"2025-03-09T23:01:28Z","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"publication_identifier":{"issn":["1745-2473"],"eissn":["1745-2481"]},"intvolume":" 21","quality_controlled":"1","language":[{"iso":"eng"}],"external_id":{"arxiv":["2403.19900"],"isi":["001434072800001"],"pmid":["40248571"]},"corr_author":"1","date_updated":"2025-09-30T10:47:36Z","has_accepted_license":"1","OA_place":"publisher","article_processing_charge":"Yes (via OA deal)","month":"02","pmid":1,"oa_version":"Published Version","year":"2025","_id":"19373","title":"Mechanochemical bistability of intestinal organoids enables robust morphogenesis","author":[{"last_name":"Xue","id":"31D2C804-F248-11E8-B48F-1D18A9856A87","full_name":"Xue, Shi-lei","first_name":"Shi-lei"},{"last_name":"Yang","full_name":"Yang, Qiutan","first_name":"Qiutan"},{"last_name":"Liberali","first_name":"Prisca","full_name":"Liberali, Prisca"},{"orcid":"0000-0001-6005-1561","last_name":"Hannezo","full_name":"Hannezo, Edouard B","id":"3A9DB764-F248-11E8-B48F-1D18A9856A87","first_name":"Edouard B"}],"project":[{"grant_number":"851288","_id":"05943252-7A3F-11EA-A408-12923DDC885E","call_identifier":"H2020","name":"Design Principles of Branching Morphogenesis"},{"_id":"268294B6-B435-11E9-9278-68D0E5697425","grant_number":"P31639","call_identifier":"FWF","name":"Active mechano-chemical description of the cell cytoskeleton"}],"publication_status":"published","article_type":"original","oa":1,"file":[{"checksum":"fb5e59be145b95f9851d3d7c9dbb85e6","success":1,"file_name":"2025_NaturePhysics_Xue.pdf","date_updated":"2025-08-05T12:12:03Z","date_created":"2025-08-05T12:12:03Z","creator":"dernst","access_level":"open_access","content_type":"application/pdf","file_size":16302436,"relation":"main_file","file_id":"20129"}],"isi":1,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","status":"public","abstract":[{"lang":"eng","text":"Reproducible pattern and form generation during embryogenesis is poorly understood. Intestinal organoid morphogenesis involves a number of mechanochemical regulators such as cell-type-specific cytoskeletal forces and osmotically driven lumen volume changes. It is unclear how these forces are coordinated in time and space to ensure robust morphogenesis. Here we show how mechanosensitive feedback on cytoskeletal tension gives rise to morphological bistability in a minimal model of organoid morphogenesis. In the model, lumen volume changes can impact the epithelial shape via both direct mechanical and indirect mechanosensitive mechanisms. We find that both bulged and budded crypt states are possible and dependent on the history of volume changes. We test key modelling assumptions via biophysical and pharmacological experiments to demonstrate how bistability can explain experimental observations, such as the importance of the timing of lumen shrinkage and robustness of the final morphogenetic state to mechanical perturbations. This suggests that bistability arising from feedback between cellular tensions and fluid pressure could be a general mechanism that coordinates multicellular shape changes in developing systems."}],"scopus_import":"1","date_published":"2025-02-28T00:00:00Z","acknowledgement":"We thank all members of the Hannezo and Liberali groups for fruitful discussions, as well as C. Schwayer, G. Quintas, L. Capolupo, D. Bruckner and D. Pinheiro for reading the manuscript. We also thank Y. Wu and X. Wu from the Yang group for performing experiments in the last rounds of revision and the So group at the National Institute of Biological Sciences, Beijing, for helping with the light-sheet time-lapse experiments. This work received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme via grant agreement no. 758617 (to P.L.), Swiss National Foundation (SNF) (no. POOP3_157531 to P.L.), the ERC under the European Union’s Horizon 2020 research and innovation programme under grant agreement no. 851288 (to E.H.) and the Austrian Science Fund (FWF) (no. P 31639 to E.H.). This work was supported by the National Natural Science Foundation of China via grant no.3247060387 (to Q.Y.) and the Strategic Priority Research Program of the Chinese Academy of Sciences (no. XDB0820000 to Q.Y.) . Open access funding provided by Institute of Science and Technology (IST Austria).","ddc":["530"],"arxiv":1,"OA_type":"hybrid"},{"date_updated":"2025-03-10T06:53:16Z","OA_type":"closed access","status":"public","publication_identifier":{"issn":["0022-2461"],"eissn":["1573-4803"]},"intvolume":" 60","quality_controlled":"1","scopus_import":"1","language":[{"iso":"eng"}],"date_published":"2025-02-08T00:00:00Z","abstract":[{"text":"In the present study, the new ternary rare earth intermetallic compound PrNi6Si6 has been investigated. This work completes the study of the RNi6Si6 series (R = rare earth). While the RNi6Si6 compounds for R = La and Ce adopt the CeNi6Si6-type (tP52, P4/nbm, No. 125), surprisingly PrNi6Si6 crystallizes in the YNi6Si6 prototype (tP52, P − 4b2, No. 117) as do all the heavier lanthanides (but Lu). The YNi6Si6-type and its homolog CeNi6Si6 are two tetragonal ordered derivative of the cubic NaZn13-type structure. Lattice parameters for PrNi6Si6 are a = 7.7846(1) Å, c = 11.2144(1) Å, with a unit cell volume, Vobs = 679.585(5) Å3. The temperature dependence of the inverse magnetic susceptibility χ−1(T) follows the Curie–Weiss law, with calculated values of the effective magnetic moment (µeff) and Weiss temperature (Θpm) of 3.55 μB and − 4.5 K, respectively. While the observed µeff is very close to the theoretical value of 3.58 µB for the free Pr3+ ions, a negative value of the Weiss temperature suggests antiferromagnetic interactions in PrNi6Si6. Magnetization measurements confirm that PrNi₆Si₆ orders antiferromagnetically (AFM) below a Néel temperature (TN) of 9 K. The Ni atoms contribute negligibly to the magnetic properties of this phase. The specific heat of PrNi₆Si₆ is approximately 0.42 J K − 1 g − 1. Measurements of electric and thermal transport reveal that PrNi₆Si₆ exhibits metallic behavior across a wide temperature range of 2–900 K, accompanied by a relatively low thermal conductivity of around 6 W K − 1 m − 1 at room temperature. Such properties, together with its high-temperature refractory behavior, make PrNi₆Si₆ worthy of consideration in technological applications where fairly good electrical conductivity should be accompanied by a limited thermal conductivity.","lang":"eng"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_number":"100051","author":[{"orcid":"0000-0003-2209-5269","last_name":"Singh","id":"12d625da-9cb3-11ed-9667-af09d37d3f0a","full_name":"Singh, Saurabh","first_name":"Saurabh"},{"first_name":"A.","full_name":"Provino, A.","last_name":"Provino"},{"last_name":"Pallecchi","first_name":"I.","full_name":"Pallecchi, I."},{"full_name":"Caglieris, F.","first_name":"F.","last_name":"Caglieris"},{"last_name":"Mödlinger","first_name":"M.","full_name":"Mödlinger, M."},{"last_name":"Mele","full_name":"Mele, P.","first_name":"P."},{"full_name":"Latronico, G.","first_name":"G.","last_name":"Latronico"},{"last_name":"Takeuchi","first_name":"T.","full_name":"Takeuchi, T."},{"last_name":"Manfrinetti","first_name":"P.","full_name":"Manfrinetti, P."}],"department":[{"_id":"MaIb"}],"date_created":"2025-03-09T23:01:29Z","article_type":"original","publication_status":"published","title":"The new PrNi6Si6 intermetallic: From crystal structure to thermal and electrical transport properties across a wide temperature range (2–900 K)","type":"journal_article","day":"08","doi":"10.1007/s10853-024-10582-y","publisher":"Springer Nature","volume":60,"oa_version":"None","year":"2025","_id":"19374","citation":{"ama":"Singh S, Provino A, Pallecchi I, et al. The new PrNi6Si6 intermetallic: From crystal structure to thermal and electrical transport properties across a wide temperature range (2–900 K). Journal of Materials Science. 2025;60. doi:10.1007/s10853-024-10582-y","chicago":"Singh, Saurabh, A. Provino, I. Pallecchi, F. Caglieris, M. Mödlinger, P. Mele, G. Latronico, T. Takeuchi, and P. Manfrinetti. “The New PrNi6Si6 Intermetallic: From Crystal Structure to Thermal and Electrical Transport Properties across a Wide Temperature Range (2–900 K).” Journal of Materials Science. Springer Nature, 2025. https://doi.org/10.1007/s10853-024-10582-y.","short":"S. Singh, A. Provino, I. Pallecchi, F. Caglieris, M. Mödlinger, P. Mele, G. Latronico, T. Takeuchi, P. Manfrinetti, Journal of Materials Science 60 (2025).","mla":"Singh, Saurabh, et al. “The New PrNi6Si6 Intermetallic: From Crystal Structure to Thermal and Electrical Transport Properties across a Wide Temperature Range (2–900 K).” Journal of Materials Science, vol. 60, 100051, Springer Nature, 2025, doi:10.1007/s10853-024-10582-y.","ista":"Singh S, Provino A, Pallecchi I, Caglieris F, Mödlinger M, Mele P, Latronico G, Takeuchi T, Manfrinetti P. 2025. The new PrNi6Si6 intermetallic: From crystal structure to thermal and electrical transport properties across a wide temperature range (2–900 K). Journal of Materials Science. 60, 100051.","apa":"Singh, S., Provino, A., Pallecchi, I., Caglieris, F., Mödlinger, M., Mele, P., … Manfrinetti, P. (2025). The new PrNi6Si6 intermetallic: From crystal structure to thermal and electrical transport properties across a wide temperature range (2–900 K). Journal of Materials Science. Springer Nature. https://doi.org/10.1007/s10853-024-10582-y","ieee":"S. Singh et al., “The new PrNi6Si6 intermetallic: From crystal structure to thermal and electrical transport properties across a wide temperature range (2–900 K),” Journal of Materials Science, vol. 60. Springer Nature, 2025."},"month":"02","article_processing_charge":"No","publication":"Journal of Materials Science"},{"oa_version":"Preprint","_id":"19375","year":"2025","title":"1–2–3–Go! Policy synthesis for parameterized Markov decision processes via decision-tree learning and generalization","article_processing_charge":"No","alternative_title":["LNCS"],"month":"01","status":"public","abstract":[{"lang":"eng","text":"Despite the advances in probabilistic model checking, the scalability of the verification methods remains limited. In particular, the state space often becomes extremely large when instantiating parameterized Markov decision processes (MDPs) even with moderate values. Synthesizing policies for such huge MDPs is beyond the reach of available tools. We propose a learning-based approach to obtain a reasonable policy for such huge MDPs.\r\n\r\nThe idea is to generalize optimal policies obtained by model-checking small instances to larger ones using decision-tree learning. Consequently, our method bypasses the need for explicit state-space exploration of large models, providing a practical solution to the state-space explosion problem. We demonstrate the efficacy of our approach by performing extensive experimentation on the relevant models from the quantitative verification benchmark set. The experimental results indicate that our policies perform well, even when the size of the model is orders of magnitude beyond the reach of state-of-the-art analysis tools."}],"scopus_import":"1","date_published":"2025-01-23T00:00:00Z","arxiv":1,"acknowledgement":"This research was funded in part by the DFG project 427755713 GOPro, the DFG GRK 2428 (ConVeY), the MUNI Award in Science and Humanities (MUNI/I/1757/2021) of the Grant Agency of Masaryk University, and the EU under MSCA grant agreement 101034413 (IST-BRIDGE).","conference":{"location":"Denver, CO, United States","name":"VMCAI: Verification, Model Checking, and Abstract Interpretation","end_date":"2025-01-21","start_date":"2025-01-20"},"OA_type":"green","author":[{"full_name":"Azeem, Muqsit","first_name":"Muqsit","last_name":"Azeem"},{"first_name":"Debraj","full_name":"Chakraborty, Debraj","last_name":"Chakraborty"},{"full_name":"Kanav, Sudeep","first_name":"Sudeep","last_name":"Kanav"},{"id":"44CEF464-F248-11E8-B48F-1D18A9856A87","full_name":"Kretinsky, Jan","first_name":"Jan","orcid":"0000-0002-8122-2881","last_name":"Kretinsky"},{"full_name":"Mohagheghi, Mohammadsadegh","first_name":"Mohammadsadegh","last_name":"Mohagheghi"},{"last_name":"Mohr","full_name":"Mohr, Stefanie","first_name":"Stefanie"},{"last_name":"Weininger","first_name":"Maximilian","id":"02ab0197-cc70-11ed-ab61-918e71f56881","full_name":"Weininger, Maximilian"}],"publication_status":"published","project":[{"name":"IST-BRIDGE: International postdoctoral program","call_identifier":"H2020","grant_number":"101034413","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c"}],"oa":1,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","isi":1,"volume":15530,"citation":{"short":"M. Azeem, D. Chakraborty, S. Kanav, J. Kretinsky, M. Mohagheghi, S. Mohr, M. Weininger, in:, 26th International Conference on Verification, Model Checking, and Abstract Interpretation, Springer Nature, 2025, pp. 97–120.","apa":"Azeem, M., Chakraborty, D., Kanav, S., Kretinsky, J., Mohagheghi, M., Mohr, S., & Weininger, M. (2025). 1–2–3–Go! Policy synthesis for parameterized Markov decision processes via decision-tree learning and generalization. In 26th International Conference on Verification, Model Checking, and Abstract Interpretation (Vol. 15530, pp. 97–120). Denver, CO, United States: Springer Nature. https://doi.org/10.1007/978-3-031-82703-7_5","mla":"Azeem, Muqsit, et al. “1–2–3–Go! Policy Synthesis for Parameterized Markov Decision Processes via Decision-Tree Learning and Generalization.” 26th International Conference on Verification, Model Checking, and Abstract Interpretation, vol. 15530, Springer Nature, 2025, pp. 97–120, doi:10.1007/978-3-031-82703-7_5.","ista":"Azeem M, Chakraborty D, Kanav S, Kretinsky J, Mohagheghi M, Mohr S, Weininger M. 2025. 1–2–3–Go! Policy synthesis for parameterized Markov decision processes via decision-tree learning and generalization. 26th International Conference on Verification, Model Checking, and Abstract Interpretation. VMCAI: Verification, Model Checking, and Abstract Interpretation, LNCS, vol. 15530, 97–120.","ieee":"M. Azeem et al., “1–2–3–Go! Policy synthesis for parameterized Markov decision processes via decision-tree learning and generalization,” in 26th International Conference on Verification, Model Checking, and Abstract Interpretation, Denver, CO, United States, 2025, vol. 15530, pp. 97–120.","ama":"Azeem M, Chakraborty D, Kanav S, et al. 1–2–3–Go! Policy synthesis for parameterized Markov decision processes via decision-tree learning and generalization. In: 26th International Conference on Verification, Model Checking, and Abstract Interpretation. Vol 15530. Springer Nature; 2025:97-120. doi:10.1007/978-3-031-82703-7_5","chicago":"Azeem, Muqsit, Debraj Chakraborty, Sudeep Kanav, Jan Kretinsky, Mohammadsadegh Mohagheghi, Stefanie Mohr, and Maximilian Weininger. “1–2–3–Go! Policy Synthesis for Parameterized Markov Decision Processes via Decision-Tree Learning and Generalization.” In 26th International Conference on Verification, Model Checking, and Abstract Interpretation, 15530:97–120. Springer Nature, 2025. https://doi.org/10.1007/978-3-031-82703-7_5."},"type":"conference","ec_funded":1,"publisher":"Springer Nature","doi":"10.1007/978-3-031-82703-7_5","day":"23","page":"97-120","publication":"26th International Conference on Verification, Model Checking, and Abstract Interpretation","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2410.18293"}],"publication_identifier":{"eissn":["1611-3349"],"isbn":["9783031827020"],"issn":["0302-9743"]},"language":[{"iso":"eng"}],"quality_controlled":"1","intvolume":" 15530","external_id":{"arxiv":["2410.18293"],"isi":["001446577100005"]},"OA_place":"repository","date_updated":"2025-09-30T10:46:54Z","department":[{"_id":"KrCh"}],"date_created":"2025-03-09T23:01:29Z"},{"article_type":"original","publication_status":"published","project":[{"name":"Integrated Germanium Quantum Technology","grant_number":"101069515","_id":"34c0acea-11ca-11ed-8bc3-8775e10fd452"},{"call_identifier":"FWF","name":"Towards scalable hut wire quantum devices","grant_number":"P32235","_id":"237B3DA4-32DE-11EA-91FC-C7463DDC885E"},{"name":"High impedance circuit quantum electrodynamics with hole spins","grant_number":"I05060","_id":"c0977eea-5a5b-11eb-8a69-a862db0cf4d1"},{"_id":"bd8bd29e-d553-11ed-ba76-f0070d4b237a","grant_number":"P36507","name":"Merging spin and superconducting qubits in planar Ge"},{"grant_number":"101034413","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c","name":"IST-BRIDGE: International postdoctoral program","call_identifier":"H2020"}],"author":[{"last_name":"Janik","orcid":"0009-0003-9037-8831","id":"396A1950-F248-11E8-B48F-1D18A9856A87","full_name":"Janik, Marian","first_name":"Marian"},{"last_name":"Roux","id":"53f93ea2-803f-11ed-ab7e-b283135794ef","full_name":"Roux, Kevin Etienne Robert","first_name":"Kevin Etienne Robert"},{"last_name":"Borja Espinosa","full_name":"Borja Espinosa, Carla N","id":"18777c01-896a-11ed-bdf8-e4851dc07d16","first_name":"Carla N"},{"first_name":"Oliver","id":"71616374-A8E9-11E9-A7CA-09ECE5697425","full_name":"Sagi, Oliver","last_name":"Sagi"},{"first_name":"Abdulhamid","id":"160D87FA-96B5-11E9-BF77-7626E6697425","full_name":"Baghdadi, Abdulhamid","last_name":"Baghdadi"},{"last_name":"Adletzberger","id":"38756BB2-F248-11E8-B48F-1D18A9856A87","full_name":"Adletzberger, Thomas","first_name":"Thomas"},{"last_name":"Calcaterra","full_name":"Calcaterra, Stefano","first_name":"Stefano"},{"full_name":"Botifoll, Marc","first_name":"Marc","last_name":"Botifoll"},{"first_name":"Alba","full_name":"Garzón Manjón, Alba","last_name":"Garzón Manjón"},{"last_name":"Arbiol","first_name":"Jordi","full_name":"Arbiol, Jordi"},{"full_name":"Chrastina, Daniel","first_name":"Daniel","last_name":"Chrastina"},{"last_name":"Isella","full_name":"Isella, Giovanni","first_name":"Giovanni"},{"full_name":"Pop, Ioan M.","first_name":"Ioan M.","last_name":"Pop"},{"last_name":"Katsaros","orcid":"0000-0001-8342-202X","id":"38DB5788-F248-11E8-B48F-1D18A9856A87","full_name":"Katsaros, Georgios","first_name":"Georgios"}],"isi":1,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","file":[{"content_type":"application/pdf","access_level":"open_access","date_created":"2025-03-17T10:53:32Z","creator":"dernst","file_id":"19415","relation":"main_file","file_size":6364878,"success":1,"checksum":"a9383dd978ca2c50b7dded6c0bb2cd49","date_updated":"2025-03-17T10:53:32Z","file_name":"2025_NatureComm_Janik.pdf"}],"oa":1,"date_published":"2025-03-01T00:00:00Z","scopus_import":"1","abstract":[{"text":"High kinetic inductance superconductors are gaining increasing interest for the realisation of qubits, amplifiers and detectors. Moreover, thanks to their high impedance, quantum buses made of such materials enable large zero-point fluctuations of the voltage, boosting the coupling rates to spin and charge qubits. However, fully exploiting the potential of disordered or granular superconductors is challenging, as their inductance and, therefore, impedance at high values are difficult to control. Here, we report a reproducible fabrication of granular aluminium resonators by developing a wireless ohmmeter, which allows in situ measurements during film deposition and, therefore, control of the kinetic inductance of granular aluminium films. Reproducible fabrication of circuits with impedances (inductances) exceeding 13 kΩ (1 nH per square) is now possible. By integrating a 7.9 kΩ resonator with a germanium double quantum dot, we demonstrate strong charge-photon coupling with a rate of gc/2π = 566 ± 2 MHz. This broadly applicable method opens the path for novel qubits and high-fidelity, long-distance two-qubit gates.","lang":"eng"}],"status":"public","OA_type":"gold","arxiv":1,"ddc":["530"],"acknowledgement":"We acknowledge Franco De Palma, Mahya Khorramshahi, Fabian Oppliger, Thomas Reisinger, Pasquale Scarlino and Xiao Xue for helpful discussions. We thank Simon Robson for proofreading the manuscript. This research was supported by the Scientific Service Units of ISTA through resources provided by the MIBA Machine Shop and the Nanofabrication facility. This research and related results were made possible with the support of the NOMIS Foundation and the HORIZON-RIA 101069515 project. This research was funded in whole or in part by the Austrian Science Fund (FWF) https://doi.org/10.55776/P32235, https://doi.org/10.55776/I5060 and https://doi.org/10.55776/P36507. For Open Access purposes, the author has applied a CC BY public copyright license to any author accepted manuscript version arising from this submission. M.J. acknowledges funding from FellowQUTE 2024-01. K.R. acknowledges funding from the European Union’s Horizon 2020 research and innovation program under the Marie Skłodowska-Curie Grant Agreement No. 101034413. I.M.P. acknowledges funding from the Deutsche Forschungsgemeinschaft (DFG - German Research Foundation) under project number 450396347 (GeHoldeQED). ICN2 acknowledges funding from Generalitat de Catalunya 2021SGR00457. We acknowledge support from CSIC Interdisciplinary Thematic Platform (PTI+) on Quantum Technologies (PTI-QTEP+). This research work has been funded by the European Commission - NextGenerationEU (Regulation EU 2020/2094), through CSIC’s Quantum Technologies Platform (QTEP). ICN2 is supported by the Severo Ochoa programme from Spanish MCIN/AEI (Grant No.: CEX2021-001214-S) and is funded by the CERCA Programme/Generalitat de Catalunya. Part of the present work has been performed in the framework of Universitat Autònoma de Barcelona Materials Science PhD programme. AGM has received funding from Grant RYC2021-033479-I funded by MCIN/AEI/10.13039/501100011033 and by European Union NextGenerationEU/PRTR. M.B. acknowledges support from SUR Generalitat de Catalunya and the EU Social Fund; project ref. 2020 FI 00103. The authors acknowledge the use of instrumentation and the technical advice provided by the Joint Electron Microscopy Centre at ALBA (JEMCA). ICN2 acknowledges funding from Grant IU16-014206 (METCAM-FIB) funded by the European Union through the European Regional Development Fund (ERDF), with the support of the Ministry of Research and Universities, Generalitat de Catalunya. ICN2 is a founding member of e-DREAM60.","article_processing_charge":"Yes","pmid":1,"month":"03","_id":"19401","year":"2025","oa_version":"Published Version","title":"Strong charge-photon coupling in planar germanium enabled by granular aluminium superinductors","file_date_updated":"2025-03-17T10:53:32Z","date_created":"2025-03-16T23:01:23Z","department":[{"_id":"GeKa"},{"_id":"JoFi"},{"_id":"M-Shop"}],"article_number":"2103","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"acknowledged_ssus":[{"_id":"M-Shop"},{"_id":"NanoFab"}],"quality_controlled":"1","language":[{"iso":"eng"}],"intvolume":" 16","publication_identifier":{"eissn":["2041-1723"]},"has_accepted_license":"1","OA_place":"publisher","date_updated":"2025-09-30T11:03:35Z","corr_author":"1","external_id":{"pmid":["40025007"],"isi":["001434774800001"],"arxiv":["2407.03079"]},"publication":"Nature Communications","DOAJ_listed":"1","citation":{"short":"M. Janik, K.E.R. Roux, C.N. Borja Espinosa, O. Sagi, A. Baghdadi, T. Adletzberger, S. Calcaterra, M. Botifoll, A. Garzón Manjón, J. Arbiol, D. Chrastina, G. Isella, I.M. Pop, G. Katsaros, Nature Communications 16 (2025).","ieee":"M. Janik et al., “Strong charge-photon coupling in planar germanium enabled by granular aluminium superinductors,” Nature Communications, vol. 16. Springer Nature, 2025.","mla":"Janik, Marian, et al. “Strong Charge-Photon Coupling in Planar Germanium Enabled by Granular Aluminium Superinductors.” Nature Communications, vol. 16, 2103, Springer Nature, 2025, doi:10.1038/s41467-025-57252-4.","apa":"Janik, M., Roux, K. E. R., Borja Espinosa, C. N., Sagi, O., Baghdadi, A., Adletzberger, T., … Katsaros, G. (2025). Strong charge-photon coupling in planar germanium enabled by granular aluminium superinductors. Nature Communications. Springer Nature. https://doi.org/10.1038/s41467-025-57252-4","ista":"Janik M, Roux KER, Borja Espinosa CN, Sagi O, Baghdadi A, Adletzberger T, Calcaterra S, Botifoll M, Garzón Manjón A, Arbiol J, Chrastina D, Isella G, Pop IM, Katsaros G. 2025. Strong charge-photon coupling in planar germanium enabled by granular aluminium superinductors. Nature Communications. 16, 2103.","ama":"Janik M, Roux KER, Borja Espinosa CN, et al. Strong charge-photon coupling in planar germanium enabled by granular aluminium superinductors. Nature Communications. 2025;16. doi:10.1038/s41467-025-57252-4","chicago":"Janik, Marian, Kevin Etienne Robert Roux, Carla N Borja Espinosa, Oliver Sagi, Abdulhamid Baghdadi, Thomas Adletzberger, Stefano Calcaterra, et al. “Strong Charge-Photon Coupling in Planar Germanium Enabled by Granular Aluminium Superinductors.” Nature Communications. Springer Nature, 2025. https://doi.org/10.1038/s41467-025-57252-4."},"volume":16,"doi":"10.1038/s41467-025-57252-4","publisher":"Springer Nature","day":"01","type":"journal_article","ec_funded":1,"related_material":{"record":[{"status":"public","relation":"earlier_version","id":"18144"},{"relation":"research_data","id":"18886","status":"public"}]}},{"date_created":"2025-03-16T23:01:23Z","file_date_updated":"2025-03-17T09:43:27Z","article_number":"2026","department":[{"_id":"EdHa"}],"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"intvolume":" 16","quality_controlled":"1","language":[{"iso":"eng"}],"publication_identifier":{"eissn":["2041-1723"]},"date_updated":"2025-09-30T10:59:30Z","OA_place":"publisher","has_accepted_license":"1","external_id":{"isi":["001435269000002"],"pmid":["40016255"]},"publication":"Nature Communications","citation":{"ieee":"A. A. Gu, M. C. Ucar, P. Tran, A. Prindle, N. P. Kamat, and J. Steinkühler, “Remodeling of lipid-foam prototissues by network-wide tension fluctuations induced by active particles,” Nature Communications, vol. 16. Springer Nature, 2025.","apa":"Gu, A. A., Ucar, M. C., Tran, P., Prindle, A., Kamat, N. P., & Steinkühler, J. (2025). Remodeling of lipid-foam prototissues by network-wide tension fluctuations induced by active particles. Nature Communications. Springer Nature. https://doi.org/10.1038/s41467-025-57178-x","ista":"Gu AA, Ucar MC, Tran P, Prindle A, Kamat NP, Steinkühler J. 2025. Remodeling of lipid-foam prototissues by network-wide tension fluctuations induced by active particles. Nature Communications. 16, 2026.","mla":"Gu, Andre A., et al. “Remodeling of Lipid-Foam Prototissues by Network-Wide Tension Fluctuations Induced by Active Particles.” Nature Communications, vol. 16, 2026, Springer Nature, 2025, doi:10.1038/s41467-025-57178-x.","short":"A.A. Gu, M.C. Ucar, P. Tran, A. Prindle, N.P. Kamat, J. Steinkühler, Nature Communications 16 (2025).","chicago":"Gu, Andre A., Mehmet C Ucar, Peter Tran, Arthur Prindle, Neha P. Kamat, and Jan Steinkühler. “Remodeling of Lipid-Foam Prototissues by Network-Wide Tension Fluctuations Induced by Active Particles.” Nature Communications. Springer Nature, 2025. https://doi.org/10.1038/s41467-025-57178-x.","ama":"Gu AA, Ucar MC, Tran P, Prindle A, Kamat NP, Steinkühler J. Remodeling of lipid-foam prototissues by network-wide tension fluctuations induced by active particles. Nature Communications. 2025;16. doi:10.1038/s41467-025-57178-x"},"DOAJ_listed":"1","volume":16,"day":"27","publisher":"Springer Nature","doi":"10.1038/s41467-025-57178-x","type":"journal_article","article_type":"original","publication_status":"published","author":[{"first_name":"Andre A.","full_name":"Gu, Andre A.","last_name":"Gu"},{"last_name":"Ucar","orcid":"0000-0003-0506-4217","full_name":"Ucar, Mehmet C","id":"50B2A802-6007-11E9-A42B-EB23E6697425","first_name":"Mehmet C"},{"last_name":"Tran","first_name":"Peter","full_name":"Tran, Peter"},{"last_name":"Prindle","first_name":"Arthur","full_name":"Prindle, Arthur"},{"last_name":"Kamat","first_name":"Neha P.","full_name":"Kamat, Neha P."},{"last_name":"Steinkühler","full_name":"Steinkühler, Jan","first_name":"Jan"}],"file":[{"access_level":"open_access","date_created":"2025-03-17T09:43:27Z","creator":"dernst","content_type":"application/pdf","file_size":2260791,"relation":"main_file","file_id":"19411","checksum":"3bbae9b470c639005815342a39e96918","success":1,"date_updated":"2025-03-17T09:43:27Z","file_name":"2025_NatureComm_Gu.pdf"}],"isi":1,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","oa":1,"abstract":[{"lang":"eng","text":"Recent advances in the field of bottom-up synthetic biology have led to the development of synthetic cells that mimic some features of real cells, such as division, protein synthesis, or DNA replication. Larger assemblies of synthetic cells may be used to form prototissues. However, existing prototissues are limited by their relatively small lateral dimensions or their lack of remodeling ability. Here, we introduce a lipid-based tissue mimetic that can be easily prepared and functionalized, consisting of a millimeter-sized “lipid-foam” with individual micrometer-sized compartments bound by lipid bilayers. We characterize the structural and mechanical properties of the lipid-foam tissue mimetic, and we demonstrate self-healing capabilities enabled by the fluidity of the lipid bilayers. Upon inclusion of bacteria in the tissue compartments, we observe that the tissue mimetic exhibits network-wide tension fluctuations driven by membrane tension generation by the swimming bacteria. Active tension fluctuations facilitate the fluidization and reorganization of the prototissue, providing a versatile platform for understanding and mimicking biological tissues."}],"date_published":"2025-02-27T00:00:00Z","scopus_import":"1","status":"public","OA_type":"gold","acknowledgement":"This research was supported in part by the National Science Foundation under Grant No. 1844336 (J.S.), 2239567 (A.P), and MRSEC DMR-2308691 (A.G., N.P.K.) and the National Institutes of Health under Grant No. 1R35GM147170-01 (A.P). J.S. thanks Reinhard Lipowsky for discussions on stability of foams.\r\nOpen Access funding enabled and organized by Projekt DEAL.","ddc":["570"],"article_processing_charge":"Yes (via OA deal)","pmid":1,"month":"02","year":"2025","_id":"19402","oa_version":"Published Version","title":"Remodeling of lipid-foam prototissues by network-wide tension fluctuations induced by active particles"},{"oa_version":"Published Version","_id":"19403","year":"2025","title":"BCS critical temperature on half-spaces","article_processing_charge":"Yes (via OA deal)","month":"04","pmid":1,"status":"public","abstract":[{"text":"We study the BCS critical temperature on half-spaces in dimensions d =1, 2, 3 with Dirichlet or Neumann boundary conditions. We prove that the critical temperature on a half-space is strictly higher than on Rd, at least at weak coupling in d = 1, 2 and weak coupling and small chemical potential in d = 3. Furthermore, we show that the relative shift in critical temperature vanishes in the weak coupling limit.","lang":"eng"}],"date_published":"2025-04-01T00:00:00Z","scopus_import":"1","arxiv":1,"ddc":["510"],"acknowledgement":"Open access funding provided by Institute of Science and Technology (IST Austria). Financial support by the Austrian Science Fund (FWF) through project number I 6427-N (as part of the SFB/TRR 352) is gratefully acknowledged.","OA_type":"hybrid","author":[{"first_name":"Barbara","full_name":"Roos, Barbara","id":"5DA90512-D80F-11E9-8994-2E2EE6697425","last_name":"Roos","orcid":"0000-0002-9071-5880"},{"last_name":"Seiringer","orcid":"0000-0002-6781-0521","first_name":"Robert","full_name":"Seiringer, Robert","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87"}],"article_type":"original","publication_status":"published","project":[{"name":"Mathematical Challenges in BCS Theory of Superconductivity","_id":"bda63fe5-d553-11ed-ba76-a16e3d2f256b","grant_number":"I06427"}],"oa":1,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","isi":1,"file":[{"checksum":"66803fb63a57987eb4f13ee2949bea77","success":1,"file_name":"2025_ArchiveRatMech_Roos.pdf","date_updated":"2025-03-17T10:07:45Z","creator":"dernst","date_created":"2025-03-17T10:07:45Z","access_level":"open_access","content_type":"application/pdf","relation":"main_file","file_size":1224282,"file_id":"19412"}],"volume":249,"citation":{"ama":"Roos B, Seiringer R. BCS critical temperature on half-spaces. Archive for Rational Mechanics and Analysis. 2025;249. doi:10.1007/s00205-025-02088-x","chicago":"Roos, Barbara, and Robert Seiringer. “BCS Critical Temperature on Half-Spaces.” Archive for Rational Mechanics and Analysis. Springer Nature, 2025. https://doi.org/10.1007/s00205-025-02088-x.","short":"B. Roos, R. Seiringer, Archive for Rational Mechanics and Analysis 249 (2025).","apa":"Roos, B., & Seiringer, R. (2025). BCS critical temperature on half-spaces. Archive for Rational Mechanics and Analysis. Springer Nature. https://doi.org/10.1007/s00205-025-02088-x","ista":"Roos B, Seiringer R. 2025. BCS critical temperature on half-spaces. Archive for Rational Mechanics and Analysis. 249, 20.","mla":"Roos, Barbara, and Robert Seiringer. “BCS Critical Temperature on Half-Spaces.” Archive for Rational Mechanics and Analysis, vol. 249, 20, Springer Nature, 2025, doi:10.1007/s00205-025-02088-x.","ieee":"B. Roos and R. Seiringer, “BCS critical temperature on half-spaces,” Archive for Rational Mechanics and Analysis, vol. 249. Springer Nature, 2025."},"type":"journal_article","doi":"10.1007/s00205-025-02088-x","publisher":"Springer Nature","day":"01","publication":"Archive for Rational Mechanics and Analysis","publication_identifier":{"eissn":["1432-0673"],"issn":["0003-9527"]},"language":[{"iso":"eng"}],"quality_controlled":"1","intvolume":" 249","corr_author":"1","external_id":{"arxiv":["2306.05824"],"pmid":["40041541"],"isi":["001435380100001"]},"OA_place":"publisher","has_accepted_license":"1","date_updated":"2025-09-30T11:01:08Z","department":[{"_id":"RoSe"}],"article_number":"20","date_created":"2025-03-16T23:01:24Z","file_date_updated":"2025-03-17T10:07:45Z","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"}},{"date_created":"2025-03-16T23:01:24Z","file_date_updated":"2025-03-17T10:26:54Z","article_number":"115387","department":[{"_id":"CaHe"},{"_id":"EdHa"},{"_id":"MiSi"},{"_id":"Bio"}],"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","image":"/images/cc_by_nc_nd.png","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","short":"CC BY-NC-ND (4.0)"},"acknowledged_ssus":[{"_id":"Bio"},{"_id":"LifeSc"},{"_id":"ScienComp"}],"intvolume":" 44","language":[{"iso":"eng"}],"quality_controlled":"1","publication_identifier":{"issn":["2639-1856"],"eissn":["2211-1247"]},"date_updated":"2025-10-22T07:00:04Z","has_accepted_license":"1","OA_place":"publisher","external_id":{"pmid":["40057955"],"isi":["001443652700001"]},"corr_author":"1","publication":"Cell Reports","citation":{"chicago":"Tavano, Ste, David Brückner, Saren Tasciyan, Xin Tong, Roland Kardos, Alexandra Schauer, Robert Hauschild, and Carl-Philipp J Heisenberg. “BMP-Dependent Patterning of Ectoderm Tissue Material Properties Modulates Lateral Mesendoderm Cell Migration during Early Zebrafish Gastrulation.” Cell Reports. Elsevier, 2025. https://doi.org/10.1016/j.celrep.2025.115387.","ama":"Tavano S, Brückner D, Tasciyan S, et al. BMP-dependent patterning of ectoderm tissue material properties modulates lateral mesendoderm cell migration during early zebrafish gastrulation. Cell Reports. 2025;44(3). doi:10.1016/j.celrep.2025.115387","ieee":"S. Tavano et al., “BMP-dependent patterning of ectoderm tissue material properties modulates lateral mesendoderm cell migration during early zebrafish gastrulation,” Cell Reports, vol. 44, no. 3. Elsevier, 2025.","apa":"Tavano, S., Brückner, D., Tasciyan, S., Tong, X., Kardos, R., Schauer, A., … Heisenberg, C.-P. J. (2025). BMP-dependent patterning of ectoderm tissue material properties modulates lateral mesendoderm cell migration during early zebrafish gastrulation. Cell Reports. Elsevier. https://doi.org/10.1016/j.celrep.2025.115387","ista":"Tavano S, Brückner D, Tasciyan S, Tong X, Kardos R, Schauer A, Hauschild R, Heisenberg C-PJ. 2025. BMP-dependent patterning of ectoderm tissue material properties modulates lateral mesendoderm cell migration during early zebrafish gastrulation. Cell Reports. 44(3), 115387.","mla":"Tavano, Ste, et al. “BMP-Dependent Patterning of Ectoderm Tissue Material Properties Modulates Lateral Mesendoderm Cell Migration during Early Zebrafish Gastrulation.” Cell Reports, vol. 44, no. 3, 115387, Elsevier, 2025, doi:10.1016/j.celrep.2025.115387.","short":"S. Tavano, D. Brückner, S. Tasciyan, X. Tong, R. Kardos, A. Schauer, R. Hauschild, C.-P.J. Heisenberg, Cell Reports 44 (2025)."},"DOAJ_listed":"1","volume":44,"day":"25","publisher":"Elsevier","doi":"10.1016/j.celrep.2025.115387","type":"journal_article","project":[{"name":"A mechano-chemical theory for stem cell fate decisions in organoid development","grant_number":"ALTF 343-2022","_id":"34e2a5b5-11ca-11ed-8bc3-b2265616ef0b"},{"grant_number":"ALTF 1159-2018","_id":"269CD5C4-B435-11E9-9278-68D0E5697425","name":"Mechanosensation in cell migration: the role of friction forces in cell polarization and directed migration"}],"publication_status":"published","article_type":"original","author":[{"last_name":"Tavano","orcid":"0000-0001-9970-7804","first_name":"Ste","full_name":"Tavano, Ste","id":"2F162F0C-F248-11E8-B48F-1D18A9856A87"},{"orcid":"0000-0001-7205-2975","last_name":"Brückner","first_name":"David","full_name":"Brückner, David","id":"e1e86031-6537-11eb-953a-f7ab92be508d"},{"first_name":"Saren","full_name":"Tasciyan, Saren","id":"4323B49C-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-1671-393X","last_name":"Tasciyan"},{"last_name":"Tong","first_name":"Xin","full_name":"Tong, Xin","id":"50F65CDC-AA30-11E9-A72B-8A12E6697425"},{"full_name":"Kardos, Roland","id":"4039350E-F248-11E8-B48F-1D18A9856A87","first_name":"Roland","last_name":"Kardos"},{"orcid":"0000-0001-7659-9142","last_name":"Schauer","first_name":"Alexandra","id":"30A536BA-F248-11E8-B48F-1D18A9856A87","full_name":"Schauer, Alexandra"},{"full_name":"Hauschild, Robert","id":"4E01D6B4-F248-11E8-B48F-1D18A9856A87","first_name":"Robert","orcid":"0000-0001-9843-3522","last_name":"Hauschild"},{"first_name":"Carl-Philipp J","id":"39427864-F248-11E8-B48F-1D18A9856A87","full_name":"Heisenberg, Carl-Philipp J","orcid":"0000-0002-0912-4566","last_name":"Heisenberg"}],"file":[{"content_type":"application/pdf","access_level":"open_access","date_created":"2025-03-17T10:26:54Z","creator":"dernst","file_id":"19413","file_size":9067797,"relation":"main_file","success":1,"checksum":"57e05dd1598c807af0afdb32cec039d3","date_updated":"2025-03-17T10:26:54Z","file_name":"2025_CellReports_Tavano.pdf"}],"isi":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa":1,"abstract":[{"lang":"eng","text":"Cell migration is a fundamental process during embryonic development. Most studies in vivo have focused on the migration of cells using the extracellular matrix (ECM) as their substrate for migration. In contrast, much less is known about how cells migrate on other cells, as found in early embryos when the ECM has not yet formed. Here, we show that lateral mesendoderm (LME) cells in the early zebrafish gastrula use the ectoderm as their substrate for migration. We show that the lateral ectoderm is permissive for the animal-pole-directed migration of LME cells, while the ectoderm at the animal pole halts it. These differences in permissiveness depend on the lateral ectoderm being more cohesive than the animal ectoderm, a property controlled by bone morphogenetic protein (BMP) signaling within the ectoderm. Collectively, these findings identify ectoderm tissue cohesion as one critical factor in regulating LME migration during zebrafish gastrulation."}],"scopus_import":"1","date_published":"2025-03-25T00:00:00Z","status":"public","OA_type":"gold","acknowledgement":"We are grateful to the colleagues who contributed to this work with discussions, technical advice, and feedback on the manuscript: Irene Steccari, David Labrousse Arias and the other members of the Heisenberg lab, Nicole Amberg, Florian Pauler, Nicoletta Petridou, Elena Scarpa, and Edouard Hannezo. We also thank the Imaging and Optics Facility, the Life Science Facility, and the Scientific Computing Unit at ISTA for support. The Next Generation Sequencing Facility at Vienna BioCenter Core Facilities performed the RNA-seq for animal and lateral ectoderm. D.B.B. was supported by the NOMIS Foundation as a NOMIS Fellow and by an EMBO Postdoctoral Fellowship (ALTF 343-2022). S. Tavano was supported by an EMBO Postdoctoral Fellowship (ALTF 1159-2018).","ddc":["570"],"article_processing_charge":"Yes","pmid":1,"month":"03","year":"2025","issue":"3","_id":"19404","oa_version":"Published Version","title":"BMP-dependent patterning of ectoderm tissue material properties modulates lateral mesendoderm cell migration during early zebrafish gastrulation"},{"has_accepted_license":"1","OA_place":"publisher","date_updated":"2025-09-30T11:03:01Z","external_id":{"isi":["001414132600001"],"arxiv":["2410.00102"]},"language":[{"iso":"eng"}],"quality_controlled":"1","intvolume":" 276","publication_identifier":{"issn":["0067-0049"]},"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"date_created":"2025-03-16T23:01:24Z","file_date_updated":"2025-03-17T10:40:41Z","department":[{"_id":"LiBu"}],"article_number":"69","doi":"10.3847/1538-4365/ad9fef","publisher":"IOP Publishing","day":"01","type":"journal_article","DOAJ_listed":"1","citation":{"ieee":"M. H. Pinsonneault et al., “APOKASC-3: The third joint spectroscopic and asteroseismic catalog for evolved stars in the Kepler fields,” Astrophysical Journal, Supplement Series, vol. 276, no. 2. IOP Publishing, 2025.","mla":"Pinsonneault, Marc H., et al. “APOKASC-3: The Third Joint Spectroscopic and Asteroseismic Catalog for Evolved Stars in the Kepler Fields.” Astrophysical Journal, Supplement Series, vol. 276, no. 2, 69, IOP Publishing, 2025, doi:10.3847/1538-4365/ad9fef.","apa":"Pinsonneault, M. H., Zinn, J. C., Tayar, J., Serenelli, A., García, R. A., Mathur, S., … Wang, J. (2025). APOKASC-3: The third joint spectroscopic and asteroseismic catalog for evolved stars in the Kepler fields. Astrophysical Journal, Supplement Series. IOP Publishing. https://doi.org/10.3847/1538-4365/ad9fef","ista":"Pinsonneault MH, Zinn JC, Tayar J, Serenelli A, García RA, Mathur S, Vrard M, Elsworth YP, Mosser B, Stello D, Bell KJ, Bugnet LA, Corsaro E, Gaulme P, Hekker S, Hon M, Huber D, Kallinger T, Cao K, Johnson JA, Liagre B, Patton RA, Santos ÂRG, Basu S, Beck PG, Beers TC, Chaplin WJ, Cunha K, Frinchaboy PM, Girardi L, Godoy-Rivera D, Holtzman JA, Jönsson H, Mészáros S, Reyes C, Rix HW, Shetrone M, Smith VV, Spoo T, Stassun KG, Wang J. 2025. APOKASC-3: The third joint spectroscopic and asteroseismic catalog for evolved stars in the Kepler fields. Astrophysical Journal, Supplement Series. 276(2), 69.","short":"M.H. Pinsonneault, J.C. Zinn, J. Tayar, A. Serenelli, R.A. García, S. Mathur, M. Vrard, Y.P. Elsworth, B. Mosser, D. Stello, K.J. Bell, L.A. Bugnet, E. Corsaro, P. Gaulme, S. Hekker, M. Hon, D. Huber, T. Kallinger, K. Cao, J.A. Johnson, B. Liagre, R.A. Patton, Â.R.G. Santos, S. Basu, P.G. Beck, T.C. Beers, W.J. Chaplin, K. Cunha, P.M. Frinchaboy, L. Girardi, D. Godoy-Rivera, J.A. Holtzman, H. Jönsson, S. Mészáros, C. Reyes, H.W. Rix, M. Shetrone, V.V. Smith, T. Spoo, K.G. Stassun, J. Wang, Astrophysical Journal, Supplement Series 276 (2025).","chicago":"Pinsonneault, Marc H., Joel C. Zinn, Jamie Tayar, Aldo Serenelli, Rafael A. García, Savita Mathur, Mathieu Vrard, et al. “APOKASC-3: The Third Joint Spectroscopic and Asteroseismic Catalog for Evolved Stars in the Kepler Fields.” Astrophysical Journal, Supplement Series. IOP Publishing, 2025. https://doi.org/10.3847/1538-4365/ad9fef.","ama":"Pinsonneault MH, Zinn JC, Tayar J, et al. APOKASC-3: The third joint spectroscopic and asteroseismic catalog for evolved stars in the Kepler fields. Astrophysical Journal, Supplement Series. 2025;276(2). doi:10.3847/1538-4365/ad9fef"},"volume":276,"publication":"Astrophysical Journal, Supplement Series","OA_type":"gold","ddc":["520"],"arxiv":1,"acknowledgement":"We thank the anonymous referee for providing constructive comments that improved the paper. This paper includes data collected by the Kepler mission and obtained from the MAST data archive at the Space Telescope Science Institute (STScI). Funding for the Kepler mission is provided by the NASA Science Mission Directorate. STScI is operated by the Association of Universities for Research in Astronomy, Inc., under NASA contract NAS 5-26555. M.H.P. acknowledges support from NASA grants 80NSSC24K0637 and 80NSSC18K1582. M.H.P., J.T., and P.M.F. acknowledge that part of this work was performed at the Aspen Center for Physics, which is supported by National Science Foundation grant PHY-1607611. M.H.P. acknowledges support from the Fundación Occident and the Instituto de Astrofísica de Canarias under the Visiting Researcher Programme 2022-2025 agreed between both institutions. A.S. acknowledges support by the Spanish Ministry of Science, Innovation and Universities through the grant PID2023-149918NB-I00 and the program Unidad de Excelencia Marìa de Maeztu CEX2020-001058-M, and by Generalitat de Catalunya through grant 2021-SGR-1526. S.B. acknowledges NSF grant AST-2205026. P.G.B. acknowledges support by the Spanish Ministry of Science and Innovation with the Ramón y Cajal fellowship Nos. RYC-2021-033137-I and MRR4032204. D.S. is supported by the Australian Research Council (DP190100666). P.G.B., D.G.R., and R.A.G. acknowledge support from the Spanish Ministry of Science and Innovation from grant No. PID2023-146453NB-100 (PLAtoSOnG). M.V. acknowledges support from NASA grant 80NSSC18K1582 and funding from the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation program (grant agreement No. 101019653). T.C.B. acknowledges partial support for this work from grant PHY 14-30152; Physics Frontier Center/JINA Center for the Evolution of the Elements (JINA-CEE), and OISE-1927130: The International Research Network for Nuclear Astrophysics (IReNA), awarded by the US National Science Foundation. The research leading to the presented results has received funding from the ERC Consolidator Grant DipolarSound (grant agreement No. 101000296). P.F. and T.S. acknowledges support from the National Science Foundation Astronomy and Astrophysics grants AST-1715662 and AST-2206541. S.M. acknowledges support by the Spanish Ministry of Science and Innovation with the Ramon y Cajal fellowship Nos. RYC-2015-17697, PID2019-107061GB-C66, and PID2023-149439NB-C41, and through AEI under the Severo Ochoa Centres of Excellence Programme 2020–2023 (CEX2019-000920-S). S.M. and D.G.R. acknowledge support from the Spanish Ministry of Science and Innovation (MICINN) from grant No. PID2019-107187GB-I00. D.G.R. acknowledges support from the Spanish Ministry of Science and Innovation (MICINN) with the Juan de la Cierva program under contract JDC2022-049054-I. L.B. gratefully acknowledges support from the European Research Council (ERC) under the Horizon Europe program (Calcifer; Starting grant agreement No. 101165631). A.R.G.S. acknowledges the support from the FCT through national funds and FEDER through COMPETE2020 (UIDB/04434/2020, UIDP/04434/2020, and 2022.03993.PTDC) and the support from the FCT through work contract No. 2020.02480.CEECIND/CP1631/CT0001.\r\n\r\nFunding for the Sloan Digital Sky Survey IV has been provided by the Alfred P. Sloan Foundation, the U.S. Department of Energy Office of Science, and the Participating Institutions. SDSS acknowledges support and resources from the Center for High-Performance Computing at the University of Utah. The SDSS website is www.sdss4.org.\r\n\r\nSDSS is managed by the Astrophysical Research Consortium for the Participating Institutions of the SDSS Collaboration including the Brazilian Participation Group, the Carnegie Institution for Science, Carnegie Mellon University, Center for Astrophysics—Harvard & Smithsonian (CfA), the Chilean Participation Group, the French Participation Group, Instituto de Astrofísica de Canarias, The Johns Hopkins University, Kavli Institute for the Physics and Mathematics of the Universe (IPMU)/University of Tokyo, the Korean Participation Group, Lawrence Berkeley National Laboratory, Leibniz Institut für Astrophysik Potsdam (AIP), Max-Planck-Institut für Astronomie (MPIA Heidelberg), Max-Planck-Institut für Astrophysik (MPA Garching), Max-Planck-Institut für Extraterrestrische Physik (MPE), National Astronomical Observatories of China, New Mexico State University, New York University, University of Notre Dame, Observatório Nacional/MCTI, The Ohio State University, Pennsylvania State University, Shanghai Astronomical Observatory, United Kingdom Participation Group, Universidad Nacional Autónoma de México, University of Arizona, University of Colorado Boulder, University of Oxford, University of Portsmouth, University of Utah, University of Virginia, University of Washington, University of Wisconsin, Vanderbilt University, and Yale University.","scopus_import":"1","abstract":[{"lang":"eng","text":"In the third APOKASC catalog, we present data for the complete sample of 15,808 evolved stars with APOGEE spectroscopic parameters and Kepler asteroseismology. We used 10 independent asteroseismic analysis techniques and anchor our system on fundamental radii derived from Gaia L and spectroscopic Teff. We provide evolutionary state, asteroseismic surface gravity, mass, radius, age, and the data used to derive them for 12,418 stars. This includes 10,036 exceptionally precise measurements, with median fractional uncertainties in \r\nvmax, Δν, mass, radius, and age of 0.6%, 0.6%, 3.8%, 1.8%, and 11.1%, respectively. We provide more limited data for 1624 additional stars that either have lower-quality data or are outside of our primary calibration domain. Using lower red giant branch (RGB) stars, we find a median age for the chemical thick disk of 9.14 ± 0.05(ran) ± 0.9(sys) Gyr with an age dispersion of 1.1 Gyr, consistent with our error model. We calibrate our red clump (RC) mass loss to derive an age consistent with the lower RGB and provide asymptotic GB and RGB ages for luminous stars. We also find a sharp upper-age boundary in the chemical thin disk. We find that scaling relations are precise and accurate on the lower RGB and RC, but they become more model dependent for more luminous giants and break down at the tip of the RGB. We recommend the use of multiple methods, calibration to a fundamental scale, and the use of stellar models to interpret frequency spacings."}],"date_published":"2025-02-01T00:00:00Z","status":"public","isi":1,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","file":[{"content_type":"application/pdf","date_created":"2025-03-17T10:40:41Z","creator":"dernst","access_level":"open_access","file_id":"19414","file_size":4993506,"relation":"main_file","success":1,"checksum":"a01a6645c6cb0b5cc75490f3339a2244","file_name":"2025_AstrophysicalJourSuppl_Pinsonneault.pdf","date_updated":"2025-03-17T10:40:41Z"}],"oa":1,"publication_status":"published","article_type":"original","author":[{"last_name":"Pinsonneault","first_name":"Marc H.","full_name":"Pinsonneault, Marc H."},{"first_name":"Joel C.","full_name":"Zinn, Joel C.","last_name":"Zinn"},{"last_name":"Tayar","first_name":"Jamie","full_name":"Tayar, Jamie"},{"last_name":"Serenelli","full_name":"Serenelli, Aldo","first_name":"Aldo"},{"full_name":"García, Rafael A.","first_name":"Rafael A.","last_name":"García"},{"full_name":"Mathur, Savita","first_name":"Savita","last_name":"Mathur"},{"first_name":"Mathieu","full_name":"Vrard, Mathieu","last_name":"Vrard"},{"full_name":"Elsworth, Yvonne P.","first_name":"Yvonne P.","last_name":"Elsworth"},{"last_name":"Mosser","first_name":"Benoit","full_name":"Mosser, Benoit"},{"last_name":"Stello","first_name":"Dennis","full_name":"Stello, Dennis"},{"last_name":"Bell","full_name":"Bell, Keaton J.","first_name":"Keaton J."},{"first_name":"Lisa Annabelle","full_name":"Bugnet, Lisa Annabelle","id":"d9edb345-f866-11ec-9b37-d119b5234501","orcid":"0000-0003-0142-4000","last_name":"Bugnet"},{"last_name":"Corsaro","full_name":"Corsaro, Enrico","first_name":"Enrico"},{"first_name":"Patrick","full_name":"Gaulme, Patrick","last_name":"Gaulme"},{"full_name":"Hekker, Saskia","first_name":"Saskia","last_name":"Hekker"},{"first_name":"Marc","full_name":"Hon, Marc","last_name":"Hon"},{"full_name":"Huber, Daniel","first_name":"Daniel","last_name":"Huber"},{"full_name":"Kallinger, Thomas","first_name":"Thomas","last_name":"Kallinger"},{"full_name":"Cao, Kaili","first_name":"Kaili","last_name":"Cao"},{"last_name":"Johnson","first_name":"Jennifer A.","full_name":"Johnson, Jennifer A."},{"last_name":"Liagre","full_name":"Liagre, Bastien","first_name":"Bastien"},{"full_name":"Patton, Rachel A.","first_name":"Rachel A.","last_name":"Patton"},{"last_name":"Santos","full_name":"Santos, Ângela R.G.","first_name":"Ângela R.G."},{"first_name":"Sarbani","full_name":"Basu, Sarbani","last_name":"Basu"},{"first_name":"Paul G.","full_name":"Beck, Paul G.","last_name":"Beck"},{"full_name":"Beers, Timothy C.","first_name":"Timothy C.","last_name":"Beers"},{"last_name":"Chaplin","first_name":"William J.","full_name":"Chaplin, William J."},{"first_name":"Katia","full_name":"Cunha, Katia","last_name":"Cunha"},{"last_name":"Frinchaboy","first_name":"Peter M.","full_name":"Frinchaboy, Peter M."},{"full_name":"Girardi, Léo","first_name":"Léo","last_name":"Girardi"},{"first_name":"Diego","full_name":"Godoy-Rivera, Diego","last_name":"Godoy-Rivera"},{"last_name":"Holtzman","full_name":"Holtzman, Jon A.","first_name":"Jon A."},{"last_name":"Jönsson","first_name":"Henrik","full_name":"Jönsson, Henrik"},{"last_name":"Mészáros","first_name":"Szabolcs","full_name":"Mészáros, Szabolcs"},{"full_name":"Reyes, Claudia","first_name":"Claudia","last_name":"Reyes"},{"last_name":"Rix","first_name":"Hans Walter","full_name":"Rix, Hans Walter"},{"full_name":"Shetrone, Matthew","first_name":"Matthew","last_name":"Shetrone"},{"full_name":"Smith, Verne V.","first_name":"Verne V.","last_name":"Smith"},{"first_name":"Taylor","full_name":"Spoo, Taylor","last_name":"Spoo"},{"last_name":"Stassun","full_name":"Stassun, Keivan G.","first_name":"Keivan G."},{"first_name":"Ji","full_name":"Wang, Ji","last_name":"Wang"}],"title":"APOKASC-3: The third joint spectroscopic and asteroseismic catalog for evolved stars in the Kepler fields","_id":"19405","issue":"2","year":"2025","oa_version":"Published Version","month":"02","article_processing_charge":"Yes"},{"author":[{"last_name":"Song","full_name":"Song, Xin","first_name":"Xin"},{"last_name":"Zhang","first_name":"Miao","full_name":"Zhang, Miao"},{"last_name":"Wang","full_name":"Wang, Ting Ting","first_name":"Ting Ting"},{"last_name":"Duan","first_name":"Yao Yuan","full_name":"Duan, Yao Yuan"},{"last_name":"Ren","full_name":"Ren, Jie","first_name":"Jie"},{"last_name":"Gao","first_name":"Hu","full_name":"Gao, Hu"},{"last_name":"Fan","full_name":"Fan, Yan Jie","first_name":"Yan Jie"},{"full_name":"Xia, Qiang Ming","first_name":"Qiang Ming","last_name":"Xia"},{"first_name":"Hui Xiang","full_name":"Cao, Hui Xiang","last_name":"Cao"},{"full_name":"Xie, Kai Dong","first_name":"Kai Dong","last_name":"Xie"},{"first_name":"Xiao Meng","full_name":"Wu, Xiao Meng","last_name":"Wu"},{"first_name":"Fei","full_name":"Zhang, Fei","last_name":"Zhang"},{"last_name":"Zhang","first_name":"Si Qi","full_name":"Zhang, Si Qi"},{"full_name":"Huang, Ying","id":"11b5bbff-8b61-11ed-b69e-d8ddd6bce951","first_name":"Ying","last_name":"Huang"},{"first_name":"Adnane","full_name":"Boualem, Adnane","last_name":"Boualem"},{"last_name":"Bendahmane","first_name":"Abdelhafid","full_name":"Bendahmane, Abdelhafid"},{"first_name":"Feng Quan","full_name":"Tan, Feng Quan","last_name":"Tan"},{"last_name":"Guo","full_name":"Guo, Wen Wu","first_name":"Wen Wu"}],"publication_status":"published","article_type":"original","isi":1,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","status":"public","scopus_import":"1","abstract":[{"lang":"eng","text":"Polyploidization is a common occurrence in the evolutionary history of flowering plants, significantly contributing to their adaptability and diversity. However, the molecular mechanisms behind these adaptive advantages are not well understood.\r\nThrough comprehensive phenotyping of diploid and tetraploid clones from Citrus and Poncirus genera, we discovered that genome doubling significantly enhances salt stress resilience. Epigenetic and transcriptomic analyses revealed that increased ethylene production in the roots of tetraploid plants was associated with hypomethylation and enhanced chromatin accessibility of the ACO1 gene. This increased ethylene production activates the transcription of reactive oxygen species scavenging genes and stress-related hormone biosynthesis genes. Consequently, tetraploid plants exhibited superior root functionality under salt stress, maintaining improved cytosolic K+/Na+ homeostasis.\r\nTo genetically validate the link between salt stress resilience and ACO1 expression, we generated overexpression and knockout lines, confirming the central role of ACO1 expression regulation following genome doubling in salt stress resilience.\r\nOur work elucidates the molecular mechanisms underlying the role of genome doubling in stress resilience. We also highlight the importance of chromatin dynamics in fine-tuning ethylene gene expression and activating salt stress resilience pathways, offering valuable insights into plant adaptation and crop genome evolution."}],"date_published":"2025-04-01T00:00:00Z","acknowledgement":"We thank Prof. Qi Xie from the Institute of Genetics and Development, Chinese Academy of Sciences, for providing the YAO promoter-driven CRISPR/Cas9 vector, our colleague Dr Robert M. Larkin from Huazhong Agricultural University, and Dr Olivier Martin from IPS2 (INRAE, France) for critical reading of the manuscript. This research was financially supported by grants from the National Key Research & Development Program of China (2024YFD1200501), the National Natural Science Foundation of China (32172525 and 32202432), the Foundation of Hubei Hongshan laboratory (2021hszd009), the China Agricultural Research System (CARS-26) and the Department of Science and Technology of Hubei Province (2022BBA0019). A. Bendahmane is funded by the ANR BioAdapt (ANR-21-LCV3-0003), LabEx Saclay Plant Sciences (SPS) (ANR-10-LABX-40-SPS), and the NectarGland ERC Project (101095736).","OA_type":"closed access","article_processing_charge":"No","month":"04","pmid":1,"oa_version":"None","_id":"19406","issue":"1","year":"2025","title":"Polyploidization leads to salt stress resilience via ethylene signaling in citrus plants","department":[{"_id":"XiFe"}],"date_created":"2025-03-16T23:01:25Z","publication_identifier":{"issn":["0028-646X"],"eissn":["1469-8137"]},"language":[{"iso":"eng"}],"quality_controlled":"1","intvolume":" 246","external_id":{"isi":["001424915600001"],"pmid":["39969116"]},"date_updated":"2025-09-30T11:00:06Z","publication":"New Phytologist","volume":246,"citation":{"apa":"Song, X., Zhang, M., Wang, T. T., Duan, Y. Y., Ren, J., Gao, H., … Guo, W. W. (2025). Polyploidization leads to salt stress resilience via ethylene signaling in citrus plants. New Phytologist. Wiley. https://doi.org/10.1111/nph.20428","mla":"Song, Xin, et al. “Polyploidization Leads to Salt Stress Resilience via Ethylene Signaling in Citrus Plants.” New Phytologist, vol. 246, no. 1, Wiley, 2025, pp. 176–91, doi:10.1111/nph.20428.","ista":"Song X, Zhang M, Wang TT, Duan YY, Ren J, Gao H, Fan YJ, Xia QM, Cao HX, Xie KD, Wu XM, Zhang F, Zhang SQ, Huang Y, Boualem A, Bendahmane A, Tan FQ, Guo WW. 2025. Polyploidization leads to salt stress resilience via ethylene signaling in citrus plants. New Phytologist. 246(1), 176–191.","ieee":"X. Song et al., “Polyploidization leads to salt stress resilience via ethylene signaling in citrus plants,” New Phytologist, vol. 246, no. 1. Wiley, pp. 176–191, 2025.","short":"X. Song, M. Zhang, T.T. Wang, Y.Y. Duan, J. Ren, H. Gao, Y.J. Fan, Q.M. Xia, H.X. Cao, K.D. Xie, X.M. Wu, F. Zhang, S.Q. Zhang, Y. Huang, A. Boualem, A. Bendahmane, F.Q. Tan, W.W. Guo, New Phytologist 246 (2025) 176–191.","chicago":"Song, Xin, Miao Zhang, Ting Ting Wang, Yao Yuan Duan, Jie Ren, Hu Gao, Yan Jie Fan, et al. “Polyploidization Leads to Salt Stress Resilience via Ethylene Signaling in Citrus Plants.” New Phytologist. Wiley, 2025. https://doi.org/10.1111/nph.20428.","ama":"Song X, Zhang M, Wang TT, et al. Polyploidization leads to salt stress resilience via ethylene signaling in citrus plants. New Phytologist. 2025;246(1):176-191. doi:10.1111/nph.20428"},"type":"journal_article","day":"01","publisher":"Wiley","doi":"10.1111/nph.20428","page":"176-191"},{"department":[{"_id":"TiBr"}],"date_created":"2025-03-16T23:01:25Z","publication_identifier":{"eissn":["1473-7124"],"issn":["0308-2105"]},"quality_controlled":"1","language":[{"iso":"eng"}],"corr_author":"1","external_id":{"isi":["001414690400001"]},"OA_place":"publisher","date_updated":"2025-09-30T11:00:35Z","publication":"Proceedings of the Royal Society of Edinburgh Section A: Mathematics","main_file_link":[{"url":"https://doi.org/10.1017/prm.2025.7","open_access":"1"}],"citation":{"ista":"Ballini F, Lombardo D, Verzobio M. 2025. On the L-polynomials of curves over finite fields. Proceedings of the Royal Society of Edinburgh Section A: Mathematics.","mla":"Ballini, Francesco, et al. “On the L-Polynomials of Curves over Finite Fields.” Proceedings of the Royal Society of Edinburgh Section A: Mathematics, Cambridge University Press, 2025, doi:10.1017/prm.2025.7.","apa":"Ballini, F., Lombardo, D., & Verzobio, M. (2025). On the L-polynomials of curves over finite fields. Proceedings of the Royal Society of Edinburgh Section A: Mathematics. Cambridge University Press. https://doi.org/10.1017/prm.2025.7","ieee":"F. Ballini, D. Lombardo, and M. Verzobio, “On the L-polynomials of curves over finite fields,” Proceedings of the Royal Society of Edinburgh Section A: Mathematics. Cambridge University Press, 2025.","short":"F. Ballini, D. Lombardo, M. Verzobio, Proceedings of the Royal Society of Edinburgh Section A: Mathematics (2025).","chicago":"Ballini, Francesco, Davide Lombardo, and Matteo Verzobio. “On the L-Polynomials of Curves over Finite Fields.” Proceedings of the Royal Society of Edinburgh Section A: Mathematics. Cambridge University Press, 2025. https://doi.org/10.1017/prm.2025.7.","ama":"Ballini F, Lombardo D, Verzobio M. On the L-polynomials of curves over finite fields. Proceedings of the Royal Society of Edinburgh Section A: Mathematics. 2025. doi:10.1017/prm.2025.7"},"type":"journal_article","publisher":"Cambridge University Press","day":"06","doi":"10.1017/prm.2025.7","author":[{"first_name":"Francesco","full_name":"Ballini, Francesco","last_name":"Ballini"},{"last_name":"Lombardo","first_name":"Davide","full_name":"Lombardo, Davide"},{"first_name":"Matteo","id":"7aa8f170-131e-11ed-88e1-a9efd01027cb","full_name":"Verzobio, Matteo","orcid":"0000-0002-0854-0306","last_name":"Verzobio"}],"article_type":"original","publication_status":"epub_ahead","oa":1,"isi":1,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","status":"public","date_published":"2025-02-06T00:00:00Z","abstract":[{"lang":"eng","text":"We discuss, in a non-Archimedean setting, the distribution of the coefficients of L-polynomials of curves of genus g over Fq . Among other results, this allows us to prove that the Q-vector space spanned by such characteristic polynomials has dimension g + 1. We also state a conjecture about the Archimedean distribution of the number of rational points of curves over finite fields."}],"scopus_import":"1","acknowledgement":"We thank Umberto Zannier for bringing the problem to our attention, for many useful suggestions, and especially for pointing out the relevance of the equidistribution results of Katz–Sarnak, noting that they imply the case q≫g0 of theorem 1.4. In addition, the first author would like to thank Umberto Zannier for his guidance during his undergraduate studies, on a topic that ultimately inspired much of the work in this article. We are grateful to J. Kaczorowski and A. Perelli for sharing their work [Reference Kaczorowski and Perelli28] before publication. We thank Christophe Ritzenthaler and Elisa Lorenzo García for their interesting comments on the first version of this article, Zhao Yu Ma for a comment about remark 3.12, and the anonymous referees for their helpful suggestions.","OA_type":"hybrid","article_processing_charge":"Yes (via OA deal)","month":"02","oa_version":"Published Version","_id":"19407","year":"2025","title":"On the L-polynomials of curves over finite fields"},{"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","isi":1,"file":[{"relation":"main_file","file_size":18285343,"file_id":"19417","access_level":"open_access","creator":"acasalla","date_created":"2025-03-19T07:58:21Z","content_type":"application/pdf","date_updated":"2025-03-19T07:58:21Z","file_name":"Casallas_et_al_2025_dclr.pdf","checksum":"bc32677e63f8abb07b330f4a08da796d"}],"oa":1,"publication_status":"published","article_type":"original","project":[{"name":"IST-BRIDGE: International postdoctoral program","call_identifier":"H2020","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c","grant_number":"101034413"},{"call_identifier":"H2020","name":"Organization of CLoUdS, and implications of Tropical cyclones and for the Energetics of the tropics, in current and waRming climate","grant_number":"805041","_id":"629205d8-2b32-11ec-9570-e1356ff73576"}],"author":[{"orcid":"0000-0002-1988-5035","last_name":"Casallas Garcia","id":"92081129-2d75-11ef-a48d-b04dd7a2385a","full_name":"Casallas Garcia, Alejandro","first_name":"Alejandro"},{"full_name":"Tompkins, A.M.","first_name":"A.M.","last_name":"Tompkins"},{"first_name":"Caroline J","id":"f978ccb0-3f7f-11eb-b193-b0e2bd13182b","full_name":"Muller, Caroline J","last_name":"Muller","orcid":"0000-0001-5836-5350"},{"last_name":"Thompson","full_name":"Thompson, G.","first_name":"G."}],"OA_type":"gold","ddc":["550"],"acknowledgement":"This article is based on chapter 3 of AC Ph.D. thesis. The authors thank Graziano Giuliani for his coding assistance. We also thank Daniel Hernández-Deckers, Paolina Cerlini, and especially to Giovanni Biagioli for discussions and feedback. We also thank two reviewers for their insightful comments. AC was supported by a fellowship awarded by ICTP and by the European Union Horizon 2020 Marie Skłodowska-Curie grant agreement No. 101034413. CM acknowledges funding from the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation program (Project CLUSTER, Grant Agreement No. 805041).","abstract":[{"text":"Recently, Biagioli and Tompkins (2023, https://doi.org/10.1029/2022ms003231) used a simple stochastic model to derive a dimensionless parameter to predict convective self aggregation (SA) development, which was based on the derivation of the maximum free convective distance ($d_{clr}$) expected in the pre-aggregated, random state. Our goal is to test and further investigate this hypothesis, namely that $d_{clr}$ can predict SA occurrence, using an ensemble of twenty-four distinct combinations of horizontal mixing, planetary boundary layer (PBL), and microphysical parameterizations. We conclude that the key impact of parameterization schemes on SA is through their control of the number of convective cores and their relative spacing, $d_{clr}$, which itself is impacted by cold-pool (CP) properties and mean updraft core size. SA is more likely when the convective core count is small, while CPs modify convective spacing via suppression in their interiors and triggering by gust-front convergence and collisions. Each parameterization scheme emphasizes a different mechanism. Subgrid-scale horizontal turbulent mixing mainly affects SA through the determination of convective core size and thus spacing. The sensitivity to the microphysics is mainly through rain evaporation and the subsequent impact on CPs, while perturbations to the ice cloud microphysics have a limited effect. Non-local PBL mixing schemes promote SA primarily by increasing convective inhibition through inversion entrainment and altering low cloud amounts, leading to fewer convective cores and larger $d_{clr}$. ","lang":"eng"}],"scopus_import":"1","date_published":"2025-03-18T00:00:00Z","status":"public","month":"03","article_processing_charge":"Yes","title":"Sensitivity of self-aggregation and the key role of the free convection distance","issue":"3","_id":"19416","year":"2025","oa_version":"Published Version","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","image":"/images/cc_by_nc_nd.png","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","short":"CC BY-NC-ND (4.0)"},"file_date_updated":"2025-03-19T07:58:21Z","date_created":"2025-03-19T07:58:38Z","department":[{"_id":"CaMu"}],"article_number":"e2024MS004791","OA_place":"publisher","has_accepted_license":"1","date_updated":"2025-09-30T11:04:38Z","corr_author":"1","external_id":{"isi":["001447023900001"]},"language":[{"iso":"eng"}],"quality_controlled":"1","intvolume":" 17","publication_identifier":{"eissn":["1942-2466"]},"publication":"Journal of Advances in Modeling Earth Systems","publisher":"Wiley","day":"18","doi":"10.1029/2024MS004791","ec_funded":1,"type":"journal_article","citation":{"short":"A. Casallas Garcia, A.M. Tompkins, C.J. Muller, G. Thompson, Journal of Advances in Modeling Earth Systems 17 (2025).","apa":"Casallas Garcia, A., Tompkins, A. M., Muller, C. J., & Thompson, G. (2025). Sensitivity of self-aggregation and the key role of the free convection distance. Journal of Advances in Modeling Earth Systems. Wiley. https://doi.org/10.1029/2024MS004791","mla":"Casallas Garcia, Alejandro, et al. “Sensitivity of Self-Aggregation and the Key Role of the Free Convection Distance.” Journal of Advances in Modeling Earth Systems, vol. 17, no. 3, e2024MS004791, Wiley, 2025, doi:10.1029/2024MS004791.","ista":"Casallas Garcia A, Tompkins AM, Muller CJ, Thompson G. 2025. Sensitivity of self-aggregation and the key role of the free convection distance. Journal of Advances in Modeling Earth Systems. 17(3), e2024MS004791.","ieee":"A. Casallas Garcia, A. M. Tompkins, C. J. Muller, and G. Thompson, “Sensitivity of self-aggregation and the key role of the free convection distance,” Journal of Advances in Modeling Earth Systems, vol. 17, no. 3. Wiley, 2025.","ama":"Casallas Garcia A, Tompkins AM, Muller CJ, Thompson G. Sensitivity of self-aggregation and the key role of the free convection distance. Journal of Advances in Modeling Earth Systems. 2025;17(3). doi:10.1029/2024MS004791","chicago":"Casallas Garcia, Alejandro, A.M. Tompkins, Caroline J Muller, and G. Thompson. “Sensitivity of Self-Aggregation and the Key Role of the Free Convection Distance.” Journal of Advances in Modeling Earth Systems. Wiley, 2025. https://doi.org/10.1029/2024MS004791."},"volume":17}]