[{"abstract":[{"lang":"eng","text":"A group is sofic when every finite subset can be well approximated in a finite symmetric group. No example of a non-sofic group is known. Higman's group, which is a circular amalgamation of four copies of the Baumslag–Solitar group, is a candidate. Here we contribute to the discussion of the problem of its soficity in two ways.\r\nWe construct variations on Higman's group replacing the Baumslag–Solitar group by other groups G. We give an elementary condition on G enjoyed for example by Z≀Z and the integral Heisenberg group, under which the resulting group is sofic.\r\n\r\nWe then use soficity to deduce that there exist permutations of Z/nZ that are seemingly pathological in that they have order dividing four and yet locally they behave like exponential functions over most of their domains. Our approach is based on that of Helfgott and Juschenko, who recently showed the soficity of Higman's group would imply some the existence of some similarly pathological functions. Our results call into question their suggestion that this might be a step towards proving the existence of a non-sofic group."}],"_id":"22205","date_published":"2019-02-01T00:00:00Z","status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","day":"01","title":"Soficity and variations on Higman’s group","issue":"1","scopus_import":"1","date_created":"2026-06-29T13:01:27Z","citation":{"mla":"Kassabov, Martin, et al. “Soficity and Variations on Higman’s Group.” <i>Journal of Combinatorial Algebra</i>, vol. 3, no. 1, European Mathematical Society, 2019, pp. 41–70, doi:<a href=\"https://doi.org/10.4171/jca/26\">10.4171/jca/26</a>.","apa":"Kassabov, M., Kuperberg, V. Z., &#38; Riley, T. R. (2019). Soficity and variations on Higman’s group. <i>Journal of Combinatorial Algebra</i>. European Mathematical Society. <a href=\"https://doi.org/10.4171/jca/26\">https://doi.org/10.4171/jca/26</a>","short":"M. Kassabov, V.Z. Kuperberg, T.R. Riley, Journal of Combinatorial Algebra 3 (2019) 41–70.","ieee":"M. Kassabov, V. Z. Kuperberg, and T. R. Riley, “Soficity and variations on Higman’s group,” <i>Journal of Combinatorial Algebra</i>, vol. 3, no. 1. European Mathematical Society, pp. 41–70, 2019.","ista":"Kassabov M, Kuperberg VZ, Riley TR. 2019. Soficity and variations on Higman’s group. Journal of Combinatorial Algebra. 3(1), 41–70.","chicago":"Kassabov, Martin, Vivian Zieve Kuperberg, and Timothy R. Riley. “Soficity and Variations on Higman’s Group.” <i>Journal of Combinatorial Algebra</i>. European Mathematical Society, 2019. <a href=\"https://doi.org/10.4171/jca/26\">https://doi.org/10.4171/jca/26</a>.","ama":"Kassabov M, Kuperberg VZ, Riley TR. Soficity and variations on Higman’s group. <i>Journal of Combinatorial Algebra</i>. 2019;3(1):41-70. doi:<a href=\"https://doi.org/10.4171/jca/26\">10.4171/jca/26</a>"},"type":"journal_article","author":[{"last_name":"Kassabov","first_name":"Martin","full_name":"Kassabov, Martin"},{"full_name":"Kuperberg, Vivian Zieve","id":"c3bac823-112d-11f0-a3f5-c264f852e697","first_name":"Vivian Zieve","last_name":"Kuperberg"},{"last_name":"Riley","first_name":"Timothy R.","full_name":"Riley, Timothy R."}],"language":[{"iso":"eng"}],"month":"02","publication_status":"published","intvolume":"         3","article_type":"original","OA_type":"green","doi":"10.4171/jca/26","arxiv":1,"article_processing_charge":"No","fulldoi":"https://doi.org/10.4171/jca/26","publication_identifier":{"eissn":["2415-6302"]},"oa":1,"publication":"Journal of Combinatorial Algebra","publisher":"European Mathematical Society","oa_version":"Preprint","extern":"1","date_updated":"2026-07-14T11:54:52Z","quality_controlled":"1","OA_place":"repository","external_id":{"arxiv":["2406.04174"]},"volume":3,"page":"41-70","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2406.04174"}],"year":"2019"},{"day":"25","title":"Synthesis of colloidal SU‐8 polymer rods using sonication","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","scopus_import":"1","issue":"17","date_created":"2026-06-30T06:30:50Z","citation":{"ista":"Fernández-Rico C, Yanagishima T, Curran A, Aarts DGAL, Dullens RPA. 2019. Synthesis of colloidal SU‐8 polymer rods using sonication. Advanced Materials. 31(17), 1807514.","chicago":"Fernández-Rico, Carla, Taiki Yanagishima, Arran Curran, Dirk G. A. L. Aarts, and Roel P. A. Dullens. “Synthesis of Colloidal SU‐8 Polymer Rods Using Sonication.” <i>Advanced Materials</i>. Wiley, 2019. <a href=\"https://doi.org/10.1002/adma.201807514\">https://doi.org/10.1002/adma.201807514</a>.","ama":"Fernández-Rico C, Yanagishima T, Curran A, Aarts DGAL, Dullens RPA. Synthesis of colloidal SU‐8 polymer rods using sonication. <i>Advanced Materials</i>. 2019;31(17). doi:<a href=\"https://doi.org/10.1002/adma.201807514\">10.1002/adma.201807514</a>","apa":"Fernández-Rico, C., Yanagishima, T., Curran, A., Aarts, D. G. A. L., &#38; Dullens, R. P. A. (2019). Synthesis of colloidal SU‐8 polymer rods using sonication. <i>Advanced Materials</i>. Wiley. <a href=\"https://doi.org/10.1002/adma.201807514\">https://doi.org/10.1002/adma.201807514</a>","short":"C. Fernández-Rico, T. Yanagishima, A. Curran, D.G.A.L. Aarts, R.P.A. Dullens, Advanced Materials 31 (2019).","ieee":"C. Fernández-Rico, T. Yanagishima, A. Curran, D. G. A. L. Aarts, and R. P. A. Dullens, “Synthesis of colloidal SU‐8 polymer rods using sonication,” <i>Advanced Materials</i>, vol. 31, no. 17. Wiley, 2019.","mla":"Fernández-Rico, Carla, et al. “Synthesis of Colloidal SU‐8 Polymer Rods Using Sonication.” <i>Advanced Materials</i>, vol. 31, no. 17, 1807514, Wiley, 2019, doi:<a href=\"https://doi.org/10.1002/adma.201807514\">10.1002/adma.201807514</a>."},"type":"journal_article","_id":"22208","abstract":[{"lang":"eng","text":"The bulk synthesis of fluorescent colloidal SU‐8 polymer rods with tunable dimensions is described. The colloidal SU‐8 rods are prepared by shearing an emulsion of SU‐8 polymer droplets and then exposing the resulting non‐Brownian rods to ultrasonic waves, which breaks them into colloidal rods with typical lengths of 3.5–10 µm and diameters of 0.4–1 µm. The rods are stable in both aqueous and apolar solvents, and by varying the composition of apolar solvent mixtures both the difference in refractive index and mass density between particles and solvent can be independently controlled. Consequently, these colloidal SU‐8 rods can be used in both 3D confocal microscopy and optical trapping experiments while carefully tuning the effect of gravity. This is demonstrated by using confocal microscopy to image the liquid crystalline phases and the isotropic–nematic interface formed by the colloidal SU‐8 rods and by optically trapping single rods in water. Finally, the simultaneous confocal imaging and optical manipulation of multiple SU‐8 rods in the isotropic phase is shown."}],"has_accepted_license":"1","date_published":"2019-04-25T00:00:00Z","status":"public","article_number":"1807514","publication":"Advanced Materials","publisher":"Wiley","tmp":{"short":"CC BY-NC (4.0)","image":"/images/cc_by_nc.png","name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode"},"extern":"1","oa_version":"Published Version","quality_controlled":"1","OA_place":"publisher","date_updated":"2026-07-15T06:22:53Z","main_file_link":[{"url":"https://doi.org/10.1002/adma.201807514","open_access":"1"}],"volume":31,"external_id":{"pmid":["30869177"]},"year":"2019","language":[{"iso":"eng"}],"author":[{"last_name":"Fernández-Rico","first_name":"Carla","id":"492def71-6250-11f0-b278-d41dbd241b62","full_name":"Fernández-Rico, Carla"},{"full_name":"Yanagishima, Taiki","last_name":"Yanagishima","first_name":"Taiki"},{"first_name":"Arran","last_name":"Curran","full_name":"Curran, Arran"},{"full_name":"Aarts, Dirk G. A. L.","first_name":"Dirk G. A. L.","last_name":"Aarts"},{"full_name":"Dullens, Roel P. A.","first_name":"Roel P. A.","last_name":"Dullens"}],"month":"04","article_type":"original","publication_status":"published","ddc":["540"],"intvolume":"        31","OA_type":"hybrid","doi":"10.1002/adma.201807514","oa":1,"publication_identifier":{"issn":["0935-9648"],"eissn":["1521-4095"]},"pmid":1,"article_processing_charge":"No","fulldoi":"https://doi.org/10.1002/adma.201807514"},{"type":"preprint","das_tickbox":"1","year":"2019","citation":{"mla":"Kokoris Kogias, Eleftherios, et al. “Bootstrapping Consensus without Trusted Setup: Fully Asynchronous Distributed Key Generation.” <i>Cryptology EPrint Archive</i>, 2019/1015.","ieee":"E. Kokoris Kogias, A. Spiegelman, D. Malkhi, and I. Abraham, “Bootstrapping consensus without trusted setup: Fully asynchronous distributed key generation,” <i>Cryptology ePrint Archive</i>. .","apa":"Kokoris Kogias, E., Spiegelman, A., Malkhi, D., &#38; Abraham, I. (n.d.). Bootstrapping consensus without trusted setup: Fully asynchronous distributed key generation. <i>Cryptology ePrint Archive</i>.","short":"E. Kokoris Kogias, A. Spiegelman, D. Malkhi, I. Abraham, Cryptology EPrint Archive (n.d.).","ama":"Kokoris Kogias E, Spiegelman A, Malkhi D, Abraham I. Bootstrapping consensus without trusted setup: Fully asynchronous distributed key generation. <i>Cryptology ePrint Archive</i>.","chicago":"Kokoris Kogias, Eleftherios, Alexander Spiegelman, Dahlia Malkhi, and Ittai Abraham. “Bootstrapping Consensus without Trusted Setup: Fully Asynchronous Distributed Key Generation.” <i>Cryptology EPrint Archive</i>, n.d.","ista":"Kokoris Kogias E, Spiegelman A, Malkhi D, Abraham I. Bootstrapping consensus without trusted setup: Fully asynchronous distributed key generation. Cryptology ePrint Archive, 2019/1015."},"date_created":"2020-08-26T12:18:00Z","main_file_link":[{"url":"https://eprint.iacr.org/2019/1015","open_access":"1"}],"external_id":{"cryptoeprintid":["2019/1015"]},"cryptoeprintid":1,"OA_place":"repository","date_updated":"2026-07-22T06:28:46Z","oa_version":"Preprint","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"Bootstrapping consensus without trusted setup: Fully asynchronous distributed key generation","publication":"Cryptology ePrint Archive","day":"10","article_number":"2019/1015","article_processing_charge":"No","status":"public","oa":1,"date_published":"2019-09-10T00:00:00Z","department":[{"_id":"ElKo"}],"OA_type":"green","publication_status":"submitted","month":"09","author":[{"orcid":"0000-0002-8827-3382","last_name":"KOKORIS KOGIAS","first_name":"Eleftherios","id":"f5983044-d7ef-11ea-ac6d-fd1430a26d30","full_name":"KOKORIS KOGIAS, Eleftherios"},{"last_name":"Spiegelman","first_name":"Alexander","full_name":"Spiegelman, Alexander"},{"full_name":"Malkhi, Dahlia","first_name":"Dahlia","last_name":"Malkhi"},{"full_name":"Abraham, Ittai","first_name":"Ittai","last_name":"Abraham"}],"_id":"8305","abstract":[{"text":"In this paper, we present the first fully asynchronous distributed key generation (ADKG) algorithm as well as the first distributed key generation algorithm that can create keys with a dual (f,2f+1)−threshold that are necessary for scalable consensus (which so far needs a trusted dealer assumption). In order to create a DKG with a dual (f,2f+1)− threshold we first answer in the affirmative the open question posed by Cachin et al. how to create an AVSS protocol with recovery thresholds f+1<k≤2f+1, which is of independent interest. Our High-threshold-AVSS (HAVSS) uses an asymmetric bi-variate polynomial, where the secret shared is hidden from any set of k nodes but an honest node that did not participate in the sharing phase can still recover his share with only n−2f shares, hence be able to contribute in the secret reconstruction. Another building block for ADKG is a novel Eventually Perfect Common Coin (EPCC) abstraction and protocol that enables the participants to create a common coin that might fail to agree at most f+1 times (even if invoked a polynomial number of times). Using EPCC we implement an Eventually Efficient Asynchronous Binary Agreement (EEABA) in which each instance takes O(n2) bits and O(1) rounds in expectation, except for at most f+1 instances which may take O(n4) bits and O(n) rounds in total. Using EEABA we construct the first fully Asynchronous Distributed Key Generation (ADKG) which has the same overhead and expected runtime as the best partially-synchronous DKG (O(n4) words, O(n) rounds). As a corollary of our ADKG we can also create the first Validated Asynchronous Byzantine Agreement (VABA) in the authenticated setting that does not need a trusted dealer to setup threshold signatures of degree n−f. Our VABA has an overhead of expected O(n2) words and O(1) time per instance after an initial O(n4) words and O(n) time bootstrap via ADKG.","lang":"eng"}],"language":[{"iso":"eng"}]},{"doi":"10.1111/nph.16180","article_processing_charge":"Yes (via OA deal)","fulldoi":"https://doi.org/10.1111/nph.16180","publication_identifier":{"eissn":["1469-8137"],"issn":["0028-646X"]},"oa":1,"pmid":1,"author":[{"full_name":"Pickup, Melinda","id":"2C78037E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6118-0541","first_name":"Melinda","last_name":"Pickup"},{"id":"4880FE40-F248-11E8-B48F-1D18A9856A87","first_name":"Nicholas H","last_name":"Barton","orcid":"0000-0002-8548-5240","full_name":"Barton, Nicholas H"},{"full_name":"Brandvain, Yaniv","last_name":"Brandvain","first_name":"Yaniv"},{"id":"32DF5794-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8441-5075","last_name":"Fraisse","first_name":"Christelle","full_name":"Fraisse, Christelle"},{"full_name":"Yakimowski, Sarah","last_name":"Yakimowski","first_name":"Sarah"},{"full_name":"Dixit, Tanmay","last_name":"Dixit","first_name":"Tanmay"},{"first_name":"Christian","last_name":"Lexer","full_name":"Lexer, Christian"},{"id":"71AA91B4-05ED-11EA-8BEB-F5833E63BD63","first_name":"Eva","last_name":"Cereghetti","full_name":"Cereghetti, Eva"},{"full_name":"Field, David","id":"419049E2-F248-11E8-B48F-1D18A9856A87","first_name":"David","last_name":"Field","orcid":"0000-0002-4014-8478"}],"language":[{"iso":"eng"}],"ec_funded":1,"project":[{"_id":"25B36484-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","name":"Mating system and the evolutionary dynamics of hybrid zones","grant_number":"329960"},{"_id":"2662AADE-B435-11E9-9278-68D0E5697425","call_identifier":"FWF","name":"Sex chromosomes and species barriers","grant_number":"M02463"}],"publication_status":"published","month":"11","ddc":["570"],"intvolume":"       224","article_type":"original","OA_type":"hybrid","volume":224,"page":"1035-1047","external_id":{"pmid":["31505037"]},"file":[{"date_created":"2019-11-13T08:15:05Z","access_level":"open_access","creator":"dernst","relation":"main_file","content_type":"application/pdf","file_name":"2019_NewPhytologist_Pickup.pdf","file_size":1511958,"file_id":"7011","checksum":"21e4c95599bbcaf7c483b89954658672","date_updated":"2020-07-14T12:47:42Z"}],"year":"2019","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"publication":"New Phytologist","publisher":"Wiley","oa_version":"Published Version","date_updated":"2026-07-28T13:22:14Z","quality_controlled":"1","OA_place":"publisher","date_published":"2019-11-01T00:00:00Z","department":[{"_id":"NiBa"}],"status":"public","_id":"6856","abstract":[{"text":"Plant mating systems play a key role in structuring genetic variation both within and between species. In hybrid zones, the outcomes and dynamics of hybridization are usually interpreted as the balance between gene flow and selection against hybrids. Yet, mating systems can introduce selective forces that alter these expectations; with diverse outcomes for the level and direction of gene flow depending on variation in outcrossing and whether the mating systems of the species pair are the same or divergent. We present a survey of hybridization in 133 species pairs from 41 plant families and examine how patterns of hybridization vary with mating system. We examine if hybrid zone mode, level of gene flow, asymmetries in gene flow and the frequency of reproductive isolating barriers vary in relation to mating system/s of the species pair. We combine these results with a simulation model and examples from the literature to address two general themes: (i) the two‐way interaction between introgression and the evolution of reproductive systems, and (ii) how mating system can facilitate or restrict interspecific gene flow. We conclude that examining mating system with hybridization provides unique opportunities to understand divergence and the processes underlying reproductive isolation.","lang":"eng"}],"file_date_updated":"2020-07-14T12:47:42Z","has_accepted_license":"1","citation":{"ista":"Pickup M, Barton NH, Brandvain Y, Fraisse C, Yakimowski S, Dixit T, Lexer C, Cereghetti E, Field D. 2019. Mating system variation in hybrid zones: Facilitation, barriers and asymmetries to gene flow. New Phytologist. 224(3), 1035–1047.","chicago":"Pickup, Melinda, Nicholas H Barton, Yaniv Brandvain, Christelle Fraisse, Sarah Yakimowski, Tanmay Dixit, Christian Lexer, Eva Cereghetti, and David Field. “Mating System Variation in Hybrid Zones: Facilitation, Barriers and Asymmetries to Gene Flow.” <i>New Phytologist</i>. Wiley, 2019. <a href=\"https://doi.org/10.1111/nph.16180\">https://doi.org/10.1111/nph.16180</a>.","ama":"Pickup M, Barton NH, Brandvain Y, et al. Mating system variation in hybrid zones: Facilitation, barriers and asymmetries to gene flow. <i>New Phytologist</i>. 2019;224(3):1035-1047. doi:<a href=\"https://doi.org/10.1111/nph.16180\">10.1111/nph.16180</a>","apa":"Pickup, M., Barton, N. H., Brandvain, Y., Fraisse, C., Yakimowski, S., Dixit, T., … Field, D. (2019). Mating system variation in hybrid zones: Facilitation, barriers and asymmetries to gene flow. <i>New Phytologist</i>. Wiley. <a href=\"https://doi.org/10.1111/nph.16180\">https://doi.org/10.1111/nph.16180</a>","ieee":"M. Pickup <i>et al.</i>, “Mating system variation in hybrid zones: Facilitation, barriers and asymmetries to gene flow,” <i>New Phytologist</i>, vol. 224, no. 3. Wiley, pp. 1035–1047, 2019.","short":"M. Pickup, N.H. Barton, Y. Brandvain, C. Fraisse, S. Yakimowski, T. Dixit, C. Lexer, E. Cereghetti, D. Field, New Phytologist 224 (2019) 1035–1047.","mla":"Pickup, Melinda, et al. “Mating System Variation in Hybrid Zones: Facilitation, Barriers and Asymmetries to Gene Flow.” <i>New Phytologist</i>, vol. 224, no. 3, Wiley, 2019, pp. 1035–47, doi:<a href=\"https://doi.org/10.1111/nph.16180\">10.1111/nph.16180</a>."},"date_created":"2019-09-07T14:35:40Z","type":"journal_article","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","day":"01","title":"Mating system variation in hybrid zones: Facilitation, barriers and asymmetries to gene flow","issue":"3","scopus_import":"1"},{"month":"10","article_type":"original","publication_status":"published","intvolume":"        20","ddc":["510"],"OA_type":"hybrid","author":[{"id":"4BC40BEC-F248-11E8-B48F-1D18A9856A87","first_name":"Nikolai K","last_name":"Leopold","orcid":"0000-0002-0495-6822","full_name":"Leopold, Nikolai K"},{"full_name":"Petrat, Sören P","id":"40AC02DC-F248-11E8-B48F-1D18A9856A87","first_name":"Sören P","last_name":"Petrat","orcid":"0000-0002-9166-5889"}],"language":[{"iso":"eng"}],"ec_funded":1,"project":[{"grant_number":"694227","name":"Analysis of quantum many-body systems","call_identifier":"H2020","_id":"25C6DC12-B435-11E9-9278-68D0E5697425"}],"arxiv":1,"article_processing_charge":"Yes (via OA deal)","corr_author":"1","fulldoi":"https://doi.org/10.1007/s00023-019-00828-w","oa":1,"publication_identifier":{"issn":["1424-0637"],"eissn":["1424-0661"]},"doi":"10.1007/s00023-019-00828-w","oa_version":"Published Version","quality_controlled":"1","OA_place":"publisher","date_updated":"2026-07-28T13:24:14Z","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"publisher":"Springer Nature","publication":"Annales Henri Poincare","year":"2019","file":[{"date_created":"2019-08-12T12:05:58Z","file_name":"2019_AnnalesHenriPoincare_Leopold.pdf","creator":"dernst","content_type":"application/pdf","relation":"main_file","access_level":"open_access","checksum":"b6dbf0d837d809293d449adf77138904","file_id":"6801","file_size":681139,"date_updated":"2020-07-14T12:47:40Z"}],"external_id":{"arxiv":["1807.06781"],"isi":["000487036900008"]},"page":"3471–3508","volume":20,"acknowledgement":"Open access funding provided by Institute of Science and Technology (IST Austria). We would like to thank Peter Pickl and Robert Seiringer for fruitful discussions, and the anonymous referees for their valuable comments and suggestions. Moreover, we would like to thank Niels Benedikter and László Erdős for helpful remarks about the semiclassical structure and the Schrödinger–Klein–Gordon equations. N. L. gratefully acknowledges financial support by the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation program (Grant Agreement No. 694227) and funding for his stay at Princeton University from the project “Effective One-Particle Equations for Correlated Many-Particle-(Coulomb) Systems: Derivation and Properties” (Project No. 318342445) of the German Research Foundation (DFG). S. P. gratefully acknowledges support from the German Academic Exchange Service (DAAD) and the National Science Foundation under Agreement No. DMS-1128155. Moreover, we would like to thank Princeton University and the Institute for Advanced Study for their hospitality. S. P. would additionally like to thank the University of Washington for hospitality.","has_accepted_license":"1","file_date_updated":"2020-07-14T12:47:40Z","_id":"6788","abstract":[{"text":"We consider the Nelson model with ultraviolet cutoff, which describes the interaction between non-relativistic particles and a positive or zero mass quantized scalar field. We take the non-relativistic particles to obey Fermi statistics and discuss the time evolution in a mean-field limit of many fermions. In this case, the limit is known to be also a semiclassical limit. We prove convergence in terms of reduced density matrices of the many-body state to a tensor product of a Slater determinant with semiclassical structure and a coherent state, which evolve according to a fermionic version of the Schrödinger–Klein–Gordon equations.","lang":"eng"}],"status":"public","date_published":"2019-10-01T00:00:00Z","department":[{"_id":"RoSe"}],"issue":"10","isi":1,"scopus_import":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","day":"01","title":"Mean-field dynamics for the Nelson model with fermions","type":"journal_article","citation":{"mla":"Leopold, Nikolai K., and Sören P. Petrat. “Mean-Field Dynamics for the Nelson Model with Fermions.” <i>Annales Henri Poincare</i>, vol. 20, no. 10, Springer Nature, 2019, pp. 3471–3508, doi:<a href=\"https://doi.org/10.1007/s00023-019-00828-w\">10.1007/s00023-019-00828-w</a>.","short":"N.K. Leopold, S.P. Petrat, Annales Henri Poincare 20 (2019) 3471–3508.","apa":"Leopold, N. K., &#38; Petrat, S. P. (2019). Mean-field dynamics for the Nelson model with fermions. <i>Annales Henri Poincare</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s00023-019-00828-w\">https://doi.org/10.1007/s00023-019-00828-w</a>","ieee":"N. K. Leopold and S. P. Petrat, “Mean-field dynamics for the Nelson model with fermions,” <i>Annales Henri Poincare</i>, vol. 20, no. 10. Springer Nature, pp. 3471–3508, 2019.","ama":"Leopold NK, Petrat SP. Mean-field dynamics for the Nelson model with fermions. <i>Annales Henri Poincare</i>. 2019;20(10):3471–3508. doi:<a href=\"https://doi.org/10.1007/s00023-019-00828-w\">10.1007/s00023-019-00828-w</a>","chicago":"Leopold, Nikolai K, and Sören P Petrat. “Mean-Field Dynamics for the Nelson Model with Fermions.” <i>Annales Henri Poincare</i>. Springer Nature, 2019. <a href=\"https://doi.org/10.1007/s00023-019-00828-w\">https://doi.org/10.1007/s00023-019-00828-w</a>.","ista":"Leopold NK, Petrat SP. 2019. Mean-field dynamics for the Nelson model with fermions. Annales Henri Poincare. 20(10), 3471–3508."},"date_created":"2019-08-11T21:59:21Z"},{"day":"08","title":"Derivation of the time dependent Gross–Pitaevskii equation in two dimensions","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","isi":1,"scopus_import":"1","issue":"1","date_created":"2019-11-25T08:08:02Z","citation":{"ama":"Jeblick M, Leopold NK, Pickl P. Derivation of the time dependent Gross–Pitaevskii equation in two dimensions. <i>Communications in Mathematical Physics</i>. 2019;372(1):1-69. doi:<a href=\"https://doi.org/10.1007/s00220-019-03599-x\">10.1007/s00220-019-03599-x</a>","chicago":"Jeblick, Maximilian, Nikolai K Leopold, and Peter Pickl. “Derivation of the Time Dependent Gross–Pitaevskii Equation in Two Dimensions.” <i>Communications in Mathematical Physics</i>. Springer Nature, 2019. <a href=\"https://doi.org/10.1007/s00220-019-03599-x\">https://doi.org/10.1007/s00220-019-03599-x</a>.","ista":"Jeblick M, Leopold NK, Pickl P. 2019. Derivation of the time dependent Gross–Pitaevskii equation in two dimensions. Communications in Mathematical Physics. 372(1), 1–69.","mla":"Jeblick, Maximilian, et al. “Derivation of the Time Dependent Gross–Pitaevskii Equation in Two Dimensions.” <i>Communications in Mathematical Physics</i>, vol. 372, no. 1, Springer Nature, 2019, pp. 1–69, doi:<a href=\"https://doi.org/10.1007/s00220-019-03599-x\">10.1007/s00220-019-03599-x</a>.","apa":"Jeblick, M., Leopold, N. K., &#38; Pickl, P. (2019). Derivation of the time dependent Gross–Pitaevskii equation in two dimensions. <i>Communications in Mathematical Physics</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s00220-019-03599-x\">https://doi.org/10.1007/s00220-019-03599-x</a>","short":"M. Jeblick, N.K. Leopold, P. Pickl, Communications in Mathematical Physics 372 (2019) 1–69.","ieee":"M. Jeblick, N. K. Leopold, and P. Pickl, “Derivation of the time dependent Gross–Pitaevskii equation in two dimensions,” <i>Communications in Mathematical Physics</i>, vol. 372, no. 1. Springer Nature, pp. 1–69, 2019."},"type":"journal_article","_id":"7100","abstract":[{"lang":"eng","text":"We present microscopic derivations of the defocusing two-dimensional cubic nonlinear Schrödinger equation and the Gross–Pitaevskii equation starting froman interacting N-particle system of bosons. We consider the interaction potential to be given either by Wβ(x)=N−1+2βW(Nβx), for any β>0, or to be given by VN(x)=e2NV(eNx), for some spherical symmetric, nonnegative and compactly supported W,V∈L∞(R2,R). In both cases we prove the convergence of the reduced density corresponding to the exact time evolution to the projector onto the solution of the corresponding nonlinear Schrödinger equation in trace norm. For the latter potential VN we show that it is crucial to take the microscopic structure of the condensate into account in order to obtain the correct dynamics."}],"has_accepted_license":"1","file_date_updated":"2020-07-14T12:47:49Z","acknowledgement":"OA fund by IST Austria","department":[{"_id":"RoSe"}],"date_published":"2019-11-08T00:00:00Z","status":"public","publisher":"Springer Nature","publication":"Communications in Mathematical Physics","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa_version":"Published Version","quality_controlled":"1","OA_place":"publisher","date_updated":"2026-07-28T13:04:54Z","volume":372,"file":[{"file_size":884469,"checksum":"cd283b475dd739e04655315abd46f528","file_id":"7101","date_updated":"2020-07-14T12:47:49Z","date_created":"2019-11-25T08:11:11Z","creator":"dernst","content_type":"application/pdf","relation":"main_file","access_level":"open_access","file_name":"2019_CommMathPhys_Jeblick.pdf"}],"external_id":{"isi":["000495193700002"]},"page":"1-69","year":"2019","language":[{"iso":"eng"}],"ec_funded":1,"project":[{"_id":"25C6DC12-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","grant_number":"694227","name":"Analysis of quantum many-body systems"}],"author":[{"last_name":"Jeblick","first_name":"Maximilian","full_name":"Jeblick, Maximilian"},{"id":"4BC40BEC-F248-11E8-B48F-1D18A9856A87","first_name":"Nikolai K","last_name":"Leopold","orcid":"0000-0002-0495-6822","full_name":"Leopold, Nikolai K"},{"first_name":"Peter","last_name":"Pickl","full_name":"Pickl, Peter"}],"ddc":["510"],"month":"11","intvolume":"       372","publication_status":"published","article_type":"original","OA_type":"hybrid","doi":"10.1007/s00220-019-03599-x","oa":1,"publication_identifier":{"issn":["0010-3616"],"eissn":["1432-0916"]},"article_processing_charge":"Yes (via OA deal)","corr_author":"1","fulldoi":"https://doi.org/10.1007/s00220-019-03599-x"},{"_id":"6890","abstract":[{"text":"Describing the protein interactions that form pleomorphic and asymmetric viruses represents a considerable challenge to most structural biology techniques, including X-ray crystallography and single particle cryo-electron microscopy. Obtaining a detailed understanding of these interactions is nevertheless important, considering the number of relevant human pathogens that do not follow strict icosahedral or helical symmetry. Cryo-electron tomography and subtomogram averaging methods provide structural insights into complex biological environments and are well suited to go beyond structures of perfectly symmetric viruses. This chapter discusses recent developments showing that cryo-ET and subtomogram averaging can provide high-resolution insights into hitherto unknown structural features of pleomorphic and asymmetric virus particles. It also describes how these methods have significantly added to our understanding of retrovirus capsid assemblies in immature and mature viruses. Additional examples of irregular viruses and their associated proteins, whose structures have been studied via cryo-ET and subtomogram averaging, further support the versatility of these methods.","lang":"eng"}],"date_published":"2019-08-27T00:00:00Z","department":[{"_id":"FlSc"}],"status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","day":"27","title":"Structural analysis of pleomorphic and asymmetric viruses using cryo-electron tomography and subtomogram averaging","isi":1,"scopus_import":"1","citation":{"mla":"Obr, Martin, and Florian KM Schur. “Structural Analysis of Pleomorphic and Asymmetric Viruses Using Cryo-Electron Tomography and Subtomogram Averaging.” <i>Complementary Strategies to Study Virus Structure and Function</i>, edited by Félix A. Rey, vol. 105, Elsevier, 2019, pp. 117–59, doi:<a href=\"https://doi.org/10.1016/bs.aivir.2019.07.008\">10.1016/bs.aivir.2019.07.008</a>.","ieee":"M. Obr and F. K. Schur, “Structural analysis of pleomorphic and asymmetric viruses using cryo-electron tomography and subtomogram averaging,” in <i>Complementary Strategies to Study Virus Structure and Function</i>, vol. 105, F. A. Rey, Ed. Elsevier, 2019, pp. 117–159.","apa":"Obr, M., &#38; Schur, F. K. (2019). Structural analysis of pleomorphic and asymmetric viruses using cryo-electron tomography and subtomogram averaging. In F. A. Rey (Ed.), <i>Complementary Strategies to Study Virus Structure and Function</i> (Vol. 105, pp. 117–159). Elsevier. <a href=\"https://doi.org/10.1016/bs.aivir.2019.07.008\">https://doi.org/10.1016/bs.aivir.2019.07.008</a>","short":"M. Obr, F.K. Schur, in:, F.A. Rey (Ed.), Complementary Strategies to Study Virus Structure and Function, Elsevier, 2019, pp. 117–159.","ista":"Obr M, Schur FK. 2019.Structural analysis of pleomorphic and asymmetric viruses using cryo-electron tomography and subtomogram averaging. In: Complementary Strategies to Study Virus Structure and Function. vol. 105, 117–159.","ama":"Obr M, Schur FK. Structural analysis of pleomorphic and asymmetric viruses using cryo-electron tomography and subtomogram averaging. In: Rey FA, ed. <i>Complementary Strategies to Study Virus Structure and Function</i>. Vol 105. Advances in Virus Research. Elsevier; 2019:117-159. doi:<a href=\"https://doi.org/10.1016/bs.aivir.2019.07.008\">10.1016/bs.aivir.2019.07.008</a>","chicago":"Obr, Martin, and Florian KM Schur. “Structural Analysis of Pleomorphic and Asymmetric Viruses Using Cryo-Electron Tomography and Subtomogram Averaging.” In <i>Complementary Strategies to Study Virus Structure and Function</i>, edited by Félix A. Rey, 105:117–59. Advances in Virus Research. Elsevier, 2019. <a href=\"https://doi.org/10.1016/bs.aivir.2019.07.008\">https://doi.org/10.1016/bs.aivir.2019.07.008</a>."},"date_created":"2019-09-18T08:15:37Z","series_title":"Advances in Virus Research","type":"book_chapter","author":[{"full_name":"Obr, Martin","last_name":"Obr","first_name":"Martin","orcid":"0000-0003-1756-6564","id":"4741CA5A-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Schur, Florian KM","id":"48AD8942-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-4790-8078","last_name":"Schur","first_name":"Florian KM"}],"language":[{"iso":"eng"}],"intvolume":"       105","publication_status":"published","month":"08","OA_type":"closed access","doi":"10.1016/bs.aivir.2019.07.008","article_processing_charge":"No","fulldoi":"https://doi.org/10.1016/bs.aivir.2019.07.008","publication_identifier":{"isbn":["9780128184561"],"issn":["0065-3527"]},"pmid":1,"editor":[{"full_name":"Rey, Félix A.","first_name":"Félix A.","last_name":"Rey"}],"publisher":"Elsevier","publication":"Complementary Strategies to Study Virus Structure and Function","oa_version":"None","date_updated":"2026-07-28T13:14:51Z","quality_controlled":"1","page":"117-159","external_id":{"pmid":["31522703"],"isi":["000501594500006"]},"volume":105,"year":"2019"},{"status":"public","date_published":"2019-08-01T00:00:00Z","department":[{"_id":"HeEd"}],"acknowledgement":"This research was performed in part at the 33rd Bellairs Winter Workshop on Computational  Geometry. We thank all other participants for a fruitful atmosphere.","_id":"6989","abstract":[{"text":"When can a polyomino piece of paper be folded into a unit cube? Prior work studied tree-like polyominoes, but polyominoes with holes remain an intriguing open problem. We present sufficient conditions for a polyomino with hole(s) to fold into a cube, and conditions under which cube folding is impossible. In particular, we show that all but five special simple holes guarantee foldability. ","lang":"eng"}],"type":"conference","date_created":"2019-11-04T16:46:11Z","citation":{"ista":"Aichholzer O, Akitaya HA, Cheung KC, Demaine ED, Demaine ML, Fekete SP, Kleist L, Kostitsyna I, Löffler M, Masárová Z, Mundilova K, Schmidt C. 2019. Folding polyominoes with holes into a cube. Proceedings of the 31st Canadian Conference on Computational Geometry. CCCG: Canadian Conference in Computational Geometry, 164–170.","ama":"Aichholzer O, Akitaya HA, Cheung KC, et al. Folding polyominoes with holes into a cube. In: <i>Proceedings of the 31st Canadian Conference on Computational Geometry</i>. Canadian Conference on Computational Geometry; 2019:164-170.","chicago":"Aichholzer, Oswin, Hugo A Akitaya, Kenneth C Cheung, Erik D Demaine, Martin L Demaine, Sandor P Fekete, Linda Kleist, et al. “Folding Polyominoes with Holes into a Cube.” In <i>Proceedings of the 31st Canadian Conference on Computational Geometry</i>, 164–70. Canadian Conference on Computational Geometry, 2019.","mla":"Aichholzer, Oswin, et al. “Folding Polyominoes with Holes into a Cube.” <i>Proceedings of the 31st Canadian Conference on Computational Geometry</i>, Canadian Conference on Computational Geometry, 2019, pp. 164–70.","ieee":"O. Aichholzer <i>et al.</i>, “Folding polyominoes with holes into a cube,” in <i>Proceedings of the 31st Canadian Conference on Computational Geometry</i>, Edmonton, Canada, 2019, pp. 164–170.","short":"O. Aichholzer, H.A. Akitaya, K.C. Cheung, E.D. Demaine, M.L. Demaine, S.P. Fekete, L. Kleist, I. Kostitsyna, M. Löffler, Z. Masárová, K. Mundilova, C. Schmidt, in:, Proceedings of the 31st Canadian Conference on Computational Geometry, Canadian Conference on Computational Geometry, 2019, pp. 164–170.","apa":"Aichholzer, O., Akitaya, H. A., Cheung, K. C., Demaine, E. D., Demaine, M. L., Fekete, S. P., … Schmidt, C. (2019). Folding polyominoes with holes into a cube. In <i>Proceedings of the 31st Canadian Conference on Computational Geometry</i> (pp. 164–170). Edmonton, Canada: Canadian Conference on Computational Geometry."},"scopus_import":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","day":"01","title":"Folding polyominoes with holes into a cube","arxiv":1,"article_processing_charge":"No","oa":1,"conference":{"location":"Edmonton, Canada","start_date":"2019-08-08","name":"CCCG: Canadian Conference in Computational Geometry","end_date":"2019-08-10"},"publication_status":"published","ddc":["500"],"month":"08","author":[{"last_name":"Aichholzer","first_name":"Oswin","full_name":"Aichholzer, Oswin"},{"full_name":"Akitaya, Hugo A","first_name":"Hugo A","last_name":"Akitaya"},{"first_name":"Kenneth C","last_name":"Cheung","full_name":"Cheung, Kenneth C"},{"first_name":"Erik D","last_name":"Demaine","full_name":"Demaine, Erik D"},{"last_name":"Demaine","first_name":"Martin L","full_name":"Demaine, Martin L"},{"full_name":"Fekete, Sandor P","last_name":"Fekete","first_name":"Sandor P"},{"full_name":"Kleist, Linda","last_name":"Kleist","first_name":"Linda"},{"first_name":"Irina","last_name":"Kostitsyna","full_name":"Kostitsyna, Irina"},{"full_name":"Löffler, Maarten","last_name":"Löffler","first_name":"Maarten"},{"full_name":"Masárová, Zuzana","id":"45CFE238-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6660-1322","first_name":"Zuzana","last_name":"Masárová"},{"full_name":"Mundilova, Klara","first_name":"Klara","last_name":"Mundilova"},{"full_name":"Schmidt, Christiane","last_name":"Schmidt","first_name":"Christiane"}],"language":[{"iso":"eng"}],"year":"2019","main_file_link":[{"open_access":"1","url":"https://sites.ualberta.ca/~cccg2019/cccg2019_proceedings.pdf"}],"external_id":{"arxiv":["1910.09917"]},"page":"164-170","oa_version":"Published Version","quality_controlled":"1","date_updated":"2026-07-28T13:08:49Z","OA_place":"publisher","related_material":{"record":[{"id":"8317","relation":"extended_version","status":"public"}]},"publisher":"Canadian Conference on Computational Geometry","publication":"Proceedings of the 31st Canadian Conference on Computational Geometry"},{"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"related_material":{"record":[{"relation":"research_data","id":"9789","status":"public"},{"status":"public","id":"9790","relation":"research_data"},{"status":"public","relation":"research_data","id":"9797"}]},"publisher":"Public Library of Science","publication":"PLoS Genetics","oa_version":"Published Version","date_updated":"2026-07-28T13:29:02Z","quality_controlled":"1","external_id":{"isi":["000466866000029"]},"file":[{"file_size":3726017,"file_id":"6445","checksum":"cf3889c8a8a16053dacf9c3776cbe217","date_updated":"2020-07-14T12:47:30Z","date_created":"2019-05-14T08:26:08Z","relation":"main_file","creator":"dernst","content_type":"application/pdf","access_level":"open_access","file_name":"2019_PLOSGenetics_Pokusaeva.pdf"}],"volume":15,"year":"2019","author":[{"id":"3184041C-F248-11E8-B48F-1D18A9856A87","first_name":"Victoria","last_name":"Pokusaeva","orcid":"0000-0001-7660-444X","full_name":"Pokusaeva, Victoria"},{"full_name":"Usmanova, Dinara R.","last_name":"Usmanova","first_name":"Dinara R."},{"full_name":"Putintseva, Ekaterina","last_name":"Putintseva","first_name":"Ekaterina","id":"2EF67C84-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Espinar, Lorena","first_name":"Lorena","last_name":"Espinar"},{"full_name":"Sarkisyan, Karen","orcid":"0000-0002-5375-6341","last_name":"Sarkisyan","first_name":"Karen","id":"39A7BF80-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Mishin, Alexander S.","last_name":"Mishin","first_name":"Alexander S."},{"full_name":"Bogatyreva, Natalya S.","last_name":"Bogatyreva","first_name":"Natalya S."},{"id":"49FF1036-F248-11E8-B48F-1D18A9856A87","first_name":"Dmitry","last_name":"Ivankov","orcid":"0000-0002-8224-4118","full_name":"Ivankov, Dmitry"},{"full_name":"Akopyan, Arseniy","id":"430D2C90-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2548-617X","last_name":"Akopyan","first_name":"Arseniy"},{"full_name":"Avvakumov, Sergey","first_name":"Sergey","last_name":"Avvakumov","orcid":"0000-0002-7840-5062","id":"3827DAC8-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Povolotskaya, Inna S.","last_name":"Povolotskaya","first_name":"Inna S."},{"full_name":"Filion, Guillaume J.","first_name":"Guillaume J.","last_name":"Filion"},{"first_name":"Lucas B.","last_name":"Carey","full_name":"Carey, Lucas B."},{"id":"44FDEF62-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8243-4694","first_name":"Fyodor","last_name":"Kondrashov","full_name":"Kondrashov, Fyodor"}],"ec_funded":1,"language":[{"iso":"eng"}],"project":[{"name":"International IST Doctoral Program","grant_number":"665385","call_identifier":"H2020","_id":"2564DBCA-B435-11E9-9278-68D0E5697425"}],"month":"04","intvolume":"        15","publication_status":"published","ddc":["570"],"doi":"10.1371/journal.pgen.1008079","article_processing_charge":"No","fulldoi":"https://doi.org/10.1371/journal.pgen.1008079","oa":1,"publication_identifier":{"eissn":["1553-7404"]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","day":"10","title":"An experimental assay of the interactions of amino acids from orthologous sequences shaping a complex fitness landscape","issue":"4","isi":1,"scopus_import":"1","citation":{"short":"V. Pokusaeva, D.R. Usmanova, E. Putintseva, L. Espinar, K. Sarkisyan, A.S. Mishin, N.S. Bogatyreva, D. Ivankov, A. Akopyan, S. Avvakumov, I.S. Povolotskaya, G.J. Filion, L.B. Carey, F. Kondrashov, PLoS Genetics 15 (2019).","apa":"Pokusaeva, V., Usmanova, D. R., Putintseva, E., Espinar, L., Sarkisyan, K., Mishin, A. S., … Kondrashov, F. (2019). An experimental assay of the interactions of amino acids from orthologous sequences shaping a complex fitness landscape. <i>PLoS Genetics</i>. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pgen.1008079\">https://doi.org/10.1371/journal.pgen.1008079</a>","ieee":"V. Pokusaeva <i>et al.</i>, “An experimental assay of the interactions of amino acids from orthologous sequences shaping a complex fitness landscape,” <i>PLoS Genetics</i>, vol. 15, no. 4. Public Library of Science, 2019.","mla":"Pokusaeva, Victoria, et al. “An Experimental Assay of the Interactions of Amino Acids from Orthologous Sequences Shaping a Complex Fitness Landscape.” <i>PLoS Genetics</i>, vol. 15, no. 4, e1008079, Public Library of Science, 2019, doi:<a href=\"https://doi.org/10.1371/journal.pgen.1008079\">10.1371/journal.pgen.1008079</a>.","ista":"Pokusaeva V, Usmanova DR, Putintseva E, Espinar L, Sarkisyan K, Mishin AS, Bogatyreva NS, Ivankov D, Akopyan A, Avvakumov S, Povolotskaya IS, Filion GJ, Carey LB, Kondrashov F. 2019. An experimental assay of the interactions of amino acids from orthologous sequences shaping a complex fitness landscape. PLoS Genetics. 15(4), e1008079.","chicago":"Pokusaeva, Victoria, Dinara R. Usmanova, Ekaterina Putintseva, Lorena Espinar, Karen Sarkisyan, Alexander S. Mishin, Natalya S. Bogatyreva, et al. “An Experimental Assay of the Interactions of Amino Acids from Orthologous Sequences Shaping a Complex Fitness Landscape.” <i>PLoS Genetics</i>. Public Library of Science, 2019. <a href=\"https://doi.org/10.1371/journal.pgen.1008079\">https://doi.org/10.1371/journal.pgen.1008079</a>.","ama":"Pokusaeva V, Usmanova DR, Putintseva E, et al. An experimental assay of the interactions of amino acids from orthologous sequences shaping a complex fitness landscape. <i>PLoS Genetics</i>. 2019;15(4). doi:<a href=\"https://doi.org/10.1371/journal.pgen.1008079\">10.1371/journal.pgen.1008079</a>"},"date_created":"2019-05-13T07:58:38Z","type":"journal_article","_id":"6419","abstract":[{"text":"Characterizing the fitness landscape, a representation of fitness for a large set of genotypes, is key to understanding how genetic information is interpreted to create functional organisms. Here we determined the evolutionarily-relevant segment of the fitness landscape of His3, a gene coding for an enzyme in the histidine synthesis pathway, focusing on combinations of amino acid states found at orthologous sites of extant species. Just 15% of amino acids found in yeast His3 orthologues were always neutral while the impact on fitness of the remaining 85% depended on the genetic background. Furthermore, at 67% of sites, amino acid replacements were under sign epistasis, having both strongly positive and negative effect in different genetic backgrounds. 46% of sites were under reciprocal sign epistasis. The fitness impact of amino acid replacements was influenced by only a few genetic backgrounds but involved interaction of multiple sites, shaping a rugged fitness landscape in which many of the shortest paths between highly fit genotypes are inaccessible.","lang":"eng"}],"file_date_updated":"2020-07-14T12:47:30Z","has_accepted_license":"1","date_published":"2019-04-10T00:00:00Z","department":[{"_id":"FyKo"}],"article_number":"e1008079","status":"public"},{"publication_identifier":{"eissn":["14320444"],"issn":["01795376"]},"oa":1,"article_processing_charge":"Yes (via OA deal)","arxiv":1,"fulldoi":"https://doi.org/10.1007/s00454-018-0049-2","corr_author":"1","doi":"10.1007/s00454-018-0049-2","month":"12","ddc":["516"],"intvolume":"        62","publication_status":"published","article_type":"original","OA_type":"hybrid","ec_funded":1,"language":[{"iso":"eng"}],"project":[{"_id":"266A2E9E-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","grant_number":"788183","name":"Alpha Shape Theory Extended"},{"call_identifier":"FWF","_id":"2561EBF4-B435-11E9-9278-68D0E5697425","name":"Persistence and stability of geometric complexes","grant_number":"I02979-N35"}],"author":[{"full_name":"Edelsbrunner, Herbert","first_name":"Herbert","last_name":"Edelsbrunner","orcid":"0000-0002-9823-6833","id":"3FB178DA-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Nikitenko, Anton","id":"3E4FF1BA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-0659-3201","first_name":"Anton","last_name":"Nikitenko"}],"year":"2019","file":[{"file_size":599339,"file_id":"5932","checksum":"f9d00e166efaccb5a76bbcbb4dcea3b4","date_updated":"2020-07-14T12:47:10Z","date_created":"2019-02-06T10:10:46Z","access_level":"open_access","creator":"dernst","relation":"main_file","content_type":"application/pdf","file_name":"2018_DiscreteCompGeometry_Edelsbrunner.pdf"}],"page":"865–878","volume":62,"external_id":{"isi":["000494042900008"],"arxiv":["1709.09380"]},"oa_version":"Published Version","OA_place":"publisher","quality_controlled":"1","date_updated":"2026-07-28T13:38:08Z","publisher":"Springer","related_material":{"record":[{"status":"public","id":"6287","relation":"dissertation_contains"}]},"publication":"Discrete and Computational Geometry","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"status":"public","department":[{"_id":"HeEd"}],"date_published":"2019-12-01T00:00:00Z","file_date_updated":"2020-07-14T12:47:10Z","has_accepted_license":"1","acknowledgement":"Open access funding provided by Institute of Science and Technology (IST Austria). This project has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (Grant Agreement No. 78818 Alpha). It is also partially supported by the DFG Collaborative Research Center TRR 109, ‘Discretization in Geometry and Dynamics’, through Grant No. I02979-N35 of the Austrian Science Fund (FWF).\r\n\r\n","abstract":[{"text":"The order-k Voronoi tessellation of a locally finite set 𝑋⊆ℝ𝑛 decomposes ℝ𝑛 into convex domains whose points have the same k nearest neighbors in X. Assuming X is a stationary Poisson point process, we give explicit formulas for the expected number and total area of faces of a given dimension per unit volume of space. We also develop a relaxed version of discrete Morse theory and generalize by counting only faces, for which the k nearest points in X are within a given distance threshold.","lang":"eng"}],"_id":"5678","type":"journal_article","citation":{"ista":"Edelsbrunner H, Nikitenko A. 2019. Poisson–Delaunay Mosaics of Order k. Discrete and Computational Geometry. 62(4), 865–878.","chicago":"Edelsbrunner, Herbert, and Anton Nikitenko. “Poisson–Delaunay Mosaics of Order K.” <i>Discrete and Computational Geometry</i>. Springer, 2019. <a href=\"https://doi.org/10.1007/s00454-018-0049-2\">https://doi.org/10.1007/s00454-018-0049-2</a>.","ama":"Edelsbrunner H, Nikitenko A. Poisson–Delaunay Mosaics of Order k. <i>Discrete and Computational Geometry</i>. 2019;62(4):865–878. doi:<a href=\"https://doi.org/10.1007/s00454-018-0049-2\">10.1007/s00454-018-0049-2</a>","mla":"Edelsbrunner, Herbert, and Anton Nikitenko. “Poisson–Delaunay Mosaics of Order K.” <i>Discrete and Computational Geometry</i>, vol. 62, no. 4, Springer, 2019, pp. 865–878, doi:<a href=\"https://doi.org/10.1007/s00454-018-0049-2\">10.1007/s00454-018-0049-2</a>.","ieee":"H. Edelsbrunner and A. Nikitenko, “Poisson–Delaunay Mosaics of Order k,” <i>Discrete and Computational Geometry</i>, vol. 62, no. 4. Springer, pp. 865–878, 2019.","short":"H. Edelsbrunner, A. Nikitenko, Discrete and Computational Geometry 62 (2019) 865–878.","apa":"Edelsbrunner, H., &#38; Nikitenko, A. (2019). Poisson–Delaunay Mosaics of Order k. <i>Discrete and Computational Geometry</i>. Springer. <a href=\"https://doi.org/10.1007/s00454-018-0049-2\">https://doi.org/10.1007/s00454-018-0049-2</a>"},"date_created":"2018-12-16T22:59:20Z","isi":1,"scopus_import":"1","issue":"4","day":"01","title":"Poisson–Delaunay Mosaics of Order k","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"date_published":"2019-01-04T00:00:00Z","department":[{"_id":"DaAl"}],"status":"public","_id":"5947","abstract":[{"text":"Graph algorithms applied in many applications, including social networks, communication networks, VLSI design, graphics, and several others, require dynamic modifications - addition and removal of vertices and/or edges - in the graph. This paper presents a novel concurrent non-blocking algorithm to implement a dynamic unbounded directed graph in a shared-memory machine. The addition and removal operations of vertices and edges are lock-free. For a finite sized graph, the lookup operations are wait-free. Most significant component of the presented algorithm is the reachability query in a concurrent graph. The reachability queries in our algorithm are obstruction-free and thus impose minimal additional synchronization cost over other operations. We prove that each of the data structure operations are linearizable. We extensively evaluate a sample C/C++ implementation of the algorithm through a number of micro-benchmarks. The experimental results show that the proposed algorithm scales well with the number of threads and on an average provides 5 to 7x performance improvement over a concurrent graph implementation using coarse-grained locking.","lang":"eng"}],"citation":{"chicago":"Chatterjee, Bapi, Sathya Peri, Muktikanta Sa, and Nandini Singhal. “A Simple and Practical Concurrent Non-Blocking Unbounded Graph with Linearizable Reachability Queries.” In <i>ACM International Conference Proceeding Series</i>, 168–77. ACM, 2019. <a href=\"https://doi.org/10.1145/3288599.3288617\">https://doi.org/10.1145/3288599.3288617</a>.","ama":"Chatterjee B, Peri S, Sa M, Singhal N. A simple and practical concurrent non-blocking unbounded graph with linearizable reachability queries. In: <i>ACM International Conference Proceeding Series</i>. ACM; 2019:168-177. doi:<a href=\"https://doi.org/10.1145/3288599.3288617\">10.1145/3288599.3288617</a>","ista":"Chatterjee B, Peri S, Sa M, Singhal N. 2019. A simple and practical concurrent non-blocking unbounded graph with linearizable reachability queries. ACM International Conference Proceeding Series. ICDCN: Conference on Distributed Computing and Networking, 168–177.","short":"B. Chatterjee, S. Peri, M. Sa, N. Singhal, in:, ACM International Conference Proceeding Series, ACM, 2019, pp. 168–177.","apa":"Chatterjee, B., Peri, S., Sa, M., &#38; Singhal, N. (2019). A simple and practical concurrent non-blocking unbounded graph with linearizable reachability queries. In <i>ACM International Conference Proceeding Series</i> (pp. 168–177). Bangalore, India: ACM. <a href=\"https://doi.org/10.1145/3288599.3288617\">https://doi.org/10.1145/3288599.3288617</a>","ieee":"B. Chatterjee, S. Peri, M. Sa, and N. Singhal, “A simple and practical concurrent non-blocking unbounded graph with linearizable reachability queries,” in <i>ACM International Conference Proceeding Series</i>, Bangalore, India, 2019, pp. 168–177.","mla":"Chatterjee, Bapi, et al. “A Simple and Practical Concurrent Non-Blocking Unbounded Graph with Linearizable Reachability Queries.” <i>ACM International Conference Proceeding Series</i>, ACM, 2019, pp. 168–77, doi:<a href=\"https://doi.org/10.1145/3288599.3288617\">10.1145/3288599.3288617</a>."},"date_created":"2019-02-10T22:59:17Z","type":"conference","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","day":"04","title":"A simple and practical concurrent non-blocking unbounded graph with linearizable reachability queries","isi":1,"scopus_import":"1","doi":"10.1145/3288599.3288617","arxiv":1,"article_processing_charge":"No","fulldoi":"https://doi.org/10.1145/3288599.3288617","corr_author":"1","publication_identifier":{"isbn":["978-1-4503-6094-4 "]},"oa":1,"author":[{"id":"3C41A08A-F248-11E8-B48F-1D18A9856A87","first_name":"Bapi","last_name":"Chatterjee","orcid":"0000-0002-2742-4028","full_name":"Chatterjee, Bapi"},{"first_name":"Sathya","last_name":"Peri","full_name":"Peri, Sathya"},{"last_name":"Sa","first_name":"Muktikanta","full_name":"Sa, Muktikanta"},{"full_name":"Singhal, Nandini","last_name":"Singhal","first_name":"Nandini"}],"language":[{"iso":"eng"}],"conference":{"end_date":"2019-01-07","name":"ICDCN: Conference on Distributed Computing and Networking","start_date":"2019-01-04","location":"Bangalore, India"},"month":"01","publication_status":"published","OA_type":"free access","main_file_link":[{"url":"https://doi.org/10.1145/3288599.3288617","open_access":"1"}],"external_id":{"isi":["000484491600019"],"arxiv":["1809.00896"]},"page":"168-177","year":"2019","publication":"ACM International Conference Proceeding Series","publisher":"ACM","oa_version":"Published Version","OA_place":"publisher","quality_controlled":"1","date_updated":"2026-07-28T13:34:36Z"},{"article_number":"040601","status":"public","date_published":"2019-02-01T00:00:00Z","department":[{"_id":"MaSe"}],"abstract":[{"text":"We introduce a simple, exactly solvable strong-randomness renormalization group (RG) model for the many-body localization (MBL) transition in one dimension. Our approach relies on a family of RG flows parametrized by the asymmetry between thermal and localized phases. We identify the physical MBL transition in the limit of maximal asymmetry, reflecting the instability of MBL against rare thermal inclusions. We find a critical point that is localized with power-law distributed thermal inclusions. The typical size of critical inclusions remains finite at the transition, while the average size is logarithmically diverging. We propose a two-parameter scaling theory for the many-body localization transition that falls into the Kosterlitz-Thouless universality class, with the MBL phase corresponding to a stable line of fixed points with multifractal behavior.","lang":"eng"}],"_id":"5906","type":"journal_article","date_created":"2019-02-01T08:22:28Z","citation":{"mla":"Goremykina, Anya, et al. “Analytically Solvable Renormalization Group for the Many-Body Localization Transition.” <i>Physical Review Letters</i>, vol. 122, no. 4, 040601, American Physical Society, 2019, doi:<a href=\"https://doi.org/10.1103/physrevlett.122.040601\">10.1103/physrevlett.122.040601</a>.","ieee":"A. Goremykina, R. Vasseur, and M. Serbyn, “Analytically solvable renormalization group for the many-body localization transition,” <i>Physical Review Letters</i>, vol. 122, no. 4. American Physical Society, 2019.","apa":"Goremykina, A., Vasseur, R., &#38; Serbyn, M. (2019). Analytically solvable renormalization group for the many-body localization transition. <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/physrevlett.122.040601\">https://doi.org/10.1103/physrevlett.122.040601</a>","short":"A. Goremykina, R. Vasseur, M. Serbyn, Physical Review Letters 122 (2019).","ista":"Goremykina A, Vasseur R, Serbyn M. 2019. Analytically solvable renormalization group for the many-body localization transition. Physical Review Letters. 122(4), 040601.","chicago":"Goremykina, Anya, Romain Vasseur, and Maksym Serbyn. “Analytically Solvable Renormalization Group for the Many-Body Localization Transition.” <i>Physical Review Letters</i>. American Physical Society, 2019. <a href=\"https://doi.org/10.1103/physrevlett.122.040601\">https://doi.org/10.1103/physrevlett.122.040601</a>.","ama":"Goremykina A, Vasseur R, Serbyn M. Analytically solvable renormalization group for the many-body localization transition. <i>Physical Review Letters</i>. 2019;122(4). doi:<a href=\"https://doi.org/10.1103/physrevlett.122.040601\">10.1103/physrevlett.122.040601</a>"},"issue":"4","scopus_import":"1","isi":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"Analytically solvable renormalization group for the many-body localization transition","day":"01","fulldoi":"https://doi.org/10.1103/physrevlett.122.040601","arxiv":1,"article_processing_charge":"No","oa":1,"publication_identifier":{"issn":["0031-9007"],"eissn":["1079-7114"]},"doi":"10.1103/physrevlett.122.040601","OA_type":"green","publication_status":"published","month":"02","intvolume":"       122","article_type":"original","author":[{"last_name":"Goremykina","first_name":"Anya","full_name":"Goremykina, Anya"},{"last_name":"Vasseur","first_name":"Romain","full_name":"Vasseur, Romain"},{"first_name":"Maksym","last_name":"Serbyn","orcid":"0000-0002-2399-5827","id":"47809E7E-F248-11E8-B48F-1D18A9856A87","full_name":"Serbyn, Maksym"}],"language":[{"iso":"eng"}],"year":"2019","external_id":{"isi":["000456783700001"],"arxiv":["1807.04285"]},"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1807.04285"}],"volume":122,"OA_place":"repository","quality_controlled":"1","date_updated":"2026-07-28T13:42:52Z","oa_version":"Preprint","publisher":"American Physical Society","publication":"Physical Review Letters"},{"date_updated":"2026-07-28T13:29:02Z","oa_version":"Published Version","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","title":"A statistical summary of segment libraries and sequencing results","day":"10","publisher":"Public Library of Science","related_material":{"record":[{"relation":"used_in_publication","id":"6419","status":"public"}]},"type":"research_data_reference","year":"2019","date_created":"2021-08-06T08:50:15Z","citation":{"ieee":"V. Pokusaeva <i>et al.</i>, “A statistical summary of segment libraries and sequencing results.” Public Library of Science, 2019.","short":"V. Pokusaeva, D.R. Usmanova, E.V. Putintseva, L. Espinar, K. Sarkisyan, A.S. Mishin, N.S. Bogatyreva, D. Ivankov, A. Akopyan, S. Avvakumov, I.S. Povolotskaya, G.J. Filion, L.B. Carey, F. Kondrashov, (2019).","apa":"Pokusaeva, V., Usmanova, D. R., Putintseva, E. V., Espinar, L., Sarkisyan, K., Mishin, A. S., … Kondrashov, F. (2019). A statistical summary of segment libraries and sequencing results. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pgen.1008079.s011\">https://doi.org/10.1371/journal.pgen.1008079.s011</a>","mla":"Pokusaeva, Victoria, et al. <i>A Statistical Summary of Segment Libraries and Sequencing Results</i>. Public Library of Science, 2019, doi:<a href=\"https://doi.org/10.1371/journal.pgen.1008079.s011\">10.1371/journal.pgen.1008079.s011</a>.","ista":"Pokusaeva V, Usmanova DR, Putintseva EV, Espinar L, Sarkisyan K, Mishin AS, Bogatyreva NS, Ivankov D, Akopyan A, Avvakumov S, Povolotskaya IS, Filion GJ, Carey LB, Kondrashov F. 2019. A statistical summary of segment libraries and sequencing results, Public Library of Science, <a href=\"https://doi.org/10.1371/journal.pgen.1008079.s011\">10.1371/journal.pgen.1008079.s011</a>.","chicago":"Pokusaeva, Victoria, Dinara R. Usmanova, Ekaterina V. Putintseva, Lorena Espinar, Karen Sarkisyan, Alexander S. Mishin, Natalya S. Bogatyreva, et al. “A Statistical Summary of Segment Libraries and Sequencing Results.” Public Library of Science, 2019. <a href=\"https://doi.org/10.1371/journal.pgen.1008079.s011\">https://doi.org/10.1371/journal.pgen.1008079.s011</a>.","ama":"Pokusaeva V, Usmanova DR, Putintseva EV, et al. A statistical summary of segment libraries and sequencing results. 2019. doi:<a href=\"https://doi.org/10.1371/journal.pgen.1008079.s011\">10.1371/journal.pgen.1008079.s011</a>"},"month":"04","author":[{"full_name":"Pokusaeva, Victoria","orcid":"0000-0001-7660-444X","first_name":"Victoria","last_name":"Pokusaeva","id":"3184041C-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Usmanova, Dinara R.","first_name":"Dinara R.","last_name":"Usmanova"},{"last_name":"Putintseva","first_name":"Ekaterina V.","full_name":"Putintseva, Ekaterina V."},{"full_name":"Espinar, Lorena","first_name":"Lorena","last_name":"Espinar"},{"orcid":"0000-0002-5375-6341","last_name":"Sarkisyan","first_name":"Karen","id":"39A7BF80-F248-11E8-B48F-1D18A9856A87","full_name":"Sarkisyan, Karen"},{"full_name":"Mishin, Alexander S.","last_name":"Mishin","first_name":"Alexander S."},{"full_name":"Bogatyreva, Natalya S.","first_name":"Natalya S.","last_name":"Bogatyreva"},{"orcid":"0000-0002-8224-4118","first_name":"Dmitry","last_name":"Ivankov","id":"49FF1036-F248-11E8-B48F-1D18A9856A87","full_name":"Ivankov, Dmitry"},{"id":"430D2C90-F248-11E8-B48F-1D18A9856A87","first_name":"Arseniy","last_name":"Akopyan","orcid":"0000-0002-2548-617X","full_name":"Akopyan, Arseniy"},{"first_name":"Sergey","last_name":"Avvakumov","orcid":"0000-0002-7840-5062","id":"3827DAC8-F248-11E8-B48F-1D18A9856A87","full_name":"Avvakumov, Sergey"},{"first_name":"Inna S.","last_name":"Povolotskaya","full_name":"Povolotskaya, Inna S."},{"first_name":"Guillaume J.","last_name":"Filion","full_name":"Filion, Guillaume J."},{"first_name":"Lucas B.","last_name":"Carey","full_name":"Carey, Lucas B."},{"first_name":"Fyodor","last_name":"Kondrashov","orcid":"0000-0001-8243-4694","id":"44FDEF62-F248-11E8-B48F-1D18A9856A87","full_name":"Kondrashov, Fyodor"}],"_id":"9790","fulldoi":"https://doi.org/10.1371/journal.pgen.1008079.s011","article_processing_charge":"No","status":"public","date_published":"2019-04-10T00:00:00Z","doi":"10.1371/journal.pgen.1008079.s011","department":[{"_id":"FyKo"}]},{"department":[{"_id":"FyKo"}],"doi":"10.1371/journal.pgen.1008079.s011","date_published":"2019-04-10T00:00:00Z","status":"public","fulldoi":"https://doi.org/10.1371/journal.pgen.1008079.s011","article_processing_charge":"No","author":[{"full_name":"Pokusaeva, Victoria","id":"3184041C-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-7660-444X","last_name":"Pokusaeva","first_name":"Victoria"},{"full_name":"Usmanova, Dinara R.","first_name":"Dinara R.","last_name":"Usmanova"},{"last_name":"Putintseva","first_name":"Ekaterina V.","full_name":"Putintseva, Ekaterina V."},{"full_name":"Espinar, Lorena","first_name":"Lorena","last_name":"Espinar"},{"full_name":"Sarkisyan, Karen","orcid":"0000-0002-5375-6341","first_name":"Karen","last_name":"Sarkisyan","id":"39A7BF80-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Alexander S.","last_name":"Mishin","full_name":"Mishin, Alexander S."},{"full_name":"Bogatyreva, Natalya S.","first_name":"Natalya S.","last_name":"Bogatyreva"},{"id":"49FF1036-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8224-4118","first_name":"Dmitry","last_name":"Ivankov","full_name":"Ivankov, Dmitry"},{"orcid":"0000-0002-2548-617X","last_name":"Akopyan","first_name":"Arseniy","id":"430D2C90-F248-11E8-B48F-1D18A9856A87","full_name":"Akopyan, Arseniy"},{"last_name":"Povolotskaya","first_name":"Inna S.","full_name":"Povolotskaya, Inna S."},{"full_name":"Filion, Guillaume J.","last_name":"Filion","first_name":"Guillaume J."},{"full_name":"Carey, Lucas B.","first_name":"Lucas B.","last_name":"Carey"},{"full_name":"Kondrashov, Fyodor","id":"44FDEF62-F248-11E8-B48F-1D18A9856A87","first_name":"Fyodor","last_name":"Kondrashov","orcid":"0000-0001-8243-4694"}],"_id":"9797","month":"04","citation":{"ama":"Pokusaeva V, Usmanova DR, Putintseva EV, et al. A statistical summary of segment libraries and sequencing results. 2019. doi:<a href=\"https://doi.org/10.1371/journal.pgen.1008079.s011\">10.1371/journal.pgen.1008079.s011</a>","chicago":"Pokusaeva, Victoria, Dinara R. Usmanova, Ekaterina V. Putintseva, Lorena Espinar, Karen Sarkisyan, Alexander S. Mishin, Natalya S. Bogatyreva, et al. “A Statistical Summary of Segment Libraries and Sequencing Results.” Public Library of Science, 2019. <a href=\"https://doi.org/10.1371/journal.pgen.1008079.s011\">https://doi.org/10.1371/journal.pgen.1008079.s011</a>.","ista":"Pokusaeva V, Usmanova DR, Putintseva EV, Espinar L, Sarkisyan K, Mishin AS, Bogatyreva NS, Ivankov D, Akopyan A, Povolotskaya IS, Filion GJ, Carey LB, Kondrashov F. 2019. A statistical summary of segment libraries and sequencing results, Public Library of Science, <a href=\"https://doi.org/10.1371/journal.pgen.1008079.s011\">10.1371/journal.pgen.1008079.s011</a>.","mla":"Pokusaeva, Victoria, et al. <i>A Statistical Summary of Segment Libraries and Sequencing Results</i>. Public Library of Science, 2019, doi:<a href=\"https://doi.org/10.1371/journal.pgen.1008079.s011\">10.1371/journal.pgen.1008079.s011</a>.","short":"V. Pokusaeva, D.R. Usmanova, E.V. Putintseva, L. Espinar, K. Sarkisyan, A.S. Mishin, N.S. Bogatyreva, D. Ivankov, A. Akopyan, I.S. Povolotskaya, G.J. Filion, L.B. Carey, F. Kondrashov, (2019).","apa":"Pokusaeva, V., Usmanova, D. R., Putintseva, E. V., Espinar, L., Sarkisyan, K., Mishin, A. S., … Kondrashov, F. (2019). A statistical summary of segment libraries and sequencing results. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pgen.1008079.s011\">https://doi.org/10.1371/journal.pgen.1008079.s011</a>","ieee":"V. Pokusaeva <i>et al.</i>, “A statistical summary of segment libraries and sequencing results.” Public Library of Science, 2019."},"date_created":"2021-08-06T11:08:20Z","year":"2019","type":"research_data_reference","title":"A statistical summary of segment libraries and sequencing results","related_material":{"record":[{"relation":"used_in_publication","id":"6419","status":"public"}]},"publisher":"Public Library of Science","day":"10","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","date_updated":"2026-07-28T13:29:02Z","oa_version":"Published Version"},{"author":[{"orcid":"0000-0001-7660-444X","last_name":"Pokusaeva","first_name":"Victoria","id":"3184041C-F248-11E8-B48F-1D18A9856A87","full_name":"Pokusaeva, Victoria"},{"first_name":"Dinara R.","last_name":"Usmanova","full_name":"Usmanova, Dinara R."},{"full_name":"Putintseva, Ekaterina V.","last_name":"Putintseva","first_name":"Ekaterina V."},{"first_name":"Lorena","last_name":"Espinar","full_name":"Espinar, Lorena"},{"full_name":"Sarkisyan, Karen","id":"39A7BF80-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-5375-6341","last_name":"Sarkisyan","first_name":"Karen"},{"full_name":"Mishin, Alexander S.","last_name":"Mishin","first_name":"Alexander S."},{"first_name":"Natalya S.","last_name":"Bogatyreva","full_name":"Bogatyreva, Natalya S."},{"last_name":"Ivankov","first_name":"Dmitry","orcid":"0000-0002-8224-4118","id":"49FF1036-F248-11E8-B48F-1D18A9856A87","full_name":"Ivankov, Dmitry"},{"id":"430D2C90-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2548-617X","first_name":"Arseniy","last_name":"Akopyan","full_name":"Akopyan, Arseniy"},{"full_name":"Avvakumov, Sergey","id":"3827DAC8-F248-11E8-B48F-1D18A9856A87","first_name":"Sergey","last_name":"Avvakumov","orcid":"0000-0002-7840-5062"},{"first_name":"Inna S.","last_name":"Povolotskaya","full_name":"Povolotskaya, Inna S."},{"first_name":"Guillaume J.","last_name":"Filion","full_name":"Filion, Guillaume J."},{"full_name":"Carey, Lucas B.","first_name":"Lucas B.","last_name":"Carey"},{"id":"44FDEF62-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8243-4694","first_name":"Fyodor","last_name":"Kondrashov","full_name":"Kondrashov, Fyodor"}],"_id":"9789","month":"04","date_published":"2019-04-10T00:00:00Z","doi":"10.1371/journal.pgen.1008079.s010","department":[{"_id":"FyKo"}],"fulldoi":"https://doi.org/10.1371/journal.pgen.1008079.s010","article_processing_charge":"No","status":"public","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","title":"Multiple alignment of His3 orthologues","related_material":{"record":[{"status":"public","id":"6419","relation":"used_in_publication"}]},"day":"10","publisher":"Public Library of Science","date_updated":"2026-07-28T13:29:01Z","oa_version":"Published Version","citation":{"mla":"Pokusaeva, Victoria, et al. <i>Multiple Alignment of His3 Orthologues</i>. Public Library of Science, 2019, doi:<a href=\"https://doi.org/10.1371/journal.pgen.1008079.s010\">10.1371/journal.pgen.1008079.s010</a>.","ieee":"V. Pokusaeva <i>et al.</i>, “Multiple alignment of His3 orthologues.” Public Library of Science, 2019.","short":"V. Pokusaeva, D.R. Usmanova, E.V. Putintseva, L. Espinar, K. Sarkisyan, A.S. Mishin, N.S. Bogatyreva, D. Ivankov, A. Akopyan, S. Avvakumov, I.S. Povolotskaya, G.J. Filion, L.B. Carey, F. Kondrashov, (2019).","apa":"Pokusaeva, V., Usmanova, D. R., Putintseva, E. V., Espinar, L., Sarkisyan, K., Mishin, A. S., … Kondrashov, F. (2019). Multiple alignment of His3 orthologues. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pgen.1008079.s010\">https://doi.org/10.1371/journal.pgen.1008079.s010</a>","ama":"Pokusaeva V, Usmanova DR, Putintseva EV, et al. Multiple alignment of His3 orthologues. 2019. doi:<a href=\"https://doi.org/10.1371/journal.pgen.1008079.s010\">10.1371/journal.pgen.1008079.s010</a>","chicago":"Pokusaeva, Victoria, Dinara R. Usmanova, Ekaterina V. Putintseva, Lorena Espinar, Karen Sarkisyan, Alexander S. Mishin, Natalya S. Bogatyreva, et al. “Multiple Alignment of His3 Orthologues.” Public Library of Science, 2019. <a href=\"https://doi.org/10.1371/journal.pgen.1008079.s010\">https://doi.org/10.1371/journal.pgen.1008079.s010</a>.","ista":"Pokusaeva V, Usmanova DR, Putintseva EV, Espinar L, Sarkisyan K, Mishin AS, Bogatyreva NS, Ivankov D, Akopyan A, Avvakumov S, Povolotskaya IS, Filion GJ, Carey LB, Kondrashov F. 2019. Multiple alignment of His3 orthologues, Public Library of Science, <a href=\"https://doi.org/10.1371/journal.pgen.1008079.s010\">10.1371/journal.pgen.1008079.s010</a>."},"date_created":"2021-08-06T08:38:50Z","type":"research_data_reference","year":"2019"},{"abstract":[{"text":"In the first part of this thesis we consider large random matrices with arbitrary expectation and a general slowly decaying correlation among its entries. We prove universality of the local eigenvalue statistics and optimal local laws for the resolvent in the bulk and edge regime. The main novel tool is a systematic diagrammatic control of a multivariate cumulant expansion.\r\nIn the second part we consider Wigner-type matrices and show that at any cusp singularity of the limiting eigenvalue distribution the local eigenvalue statistics are uni- versal and form a Pearcey process. Since the density of states typically exhibits only square root or cubic root cusp singularities, our work complements previous results on the bulk and edge universality and it thus completes the resolution of the Wigner- Dyson-Mehta universality conjecture for the last remaining universality type. Our analysis holds not only for exact cusps, but approximate cusps as well, where an ex- tended Pearcey process emerges. As a main technical ingredient we prove an optimal local law at the cusp, and extend the fast relaxation to equilibrium of the Dyson Brow- nian motion to the cusp regime.\r\nIn the third and final part we explore the entrywise linear statistics of Wigner ma- trices and identify the fluctuations for a large class of test functions with little regularity. This enables us to study the rectangular Young diagram obtained from the interlacing eigenvalues of the random matrix and its minor, and we find that, despite having the same limit, the fluctuations differ from those of the algebraic Young tableaux equipped with the Plancharel measure.","lang":"eng"}],"_id":"6179","file_date_updated":"2020-07-14T12:47:21Z","has_accepted_license":"1","date_published":"2019-03-18T00:00:00Z","department":[{"_id":"LaEr"},{"_id":"GradSch"}],"status":"public","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","title":"From Dyson to Pearcey: Universal statistics in random matrix theory","day":"18","citation":{"mla":"Schröder, Dominik J. <i>From Dyson to Pearcey: Universal Statistics in Random Matrix Theory</i>. Institute of Science and Technology Austria, 2019, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:th6179\">10.15479/AT:ISTA:th6179</a>.","ieee":"D. J. Schröder, “From Dyson to Pearcey: Universal statistics in random matrix theory,” Institute of Science and Technology Austria, 2019.","short":"D.J. Schröder, From Dyson to Pearcey: Universal Statistics in Random Matrix Theory, Institute of Science and Technology Austria, 2019.","apa":"Schröder, D. J. (2019). <i>From Dyson to Pearcey: Universal statistics in random matrix theory</i>. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:th6179\">https://doi.org/10.15479/AT:ISTA:th6179</a>","ista":"Schröder DJ. 2019. From Dyson to Pearcey: Universal statistics in random matrix theory. Institute of Science and Technology Austria.","ama":"Schröder DJ. From Dyson to Pearcey: Universal statistics in random matrix theory. 2019. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:th6179\">10.15479/AT:ISTA:th6179</a>","chicago":"Schröder, Dominik J. “From Dyson to Pearcey: Universal Statistics in Random Matrix Theory.” Institute of Science and Technology Austria, 2019. <a href=\"https://doi.org/10.15479/AT:ISTA:th6179\">https://doi.org/10.15479/AT:ISTA:th6179</a>."},"date_created":"2019-03-28T08:58:59Z","type":"dissertation","supervisor":[{"first_name":"László","last_name":"Erdös","orcid":"0000-0001-5366-9603","id":"4DBD5372-F248-11E8-B48F-1D18A9856A87","full_name":"Erdös, László"}],"author":[{"orcid":"0000-0002-2904-1856","last_name":"Schröder","first_name":"Dominik J","id":"408ED176-F248-11E8-B48F-1D18A9856A87","full_name":"Schröder, Dominik J"}],"project":[{"grant_number":"338804","name":"Random matrices, universality and disordered quantum systems","_id":"258DCDE6-B435-11E9-9278-68D0E5697425","call_identifier":"FP7"}],"language":[{"iso":"eng"}],"ec_funded":1,"month":"03","publication_status":"published","ddc":["515","519"],"doi":"10.15479/AT:ISTA:th6179","corr_author":"1","fulldoi":"https://doi.org/10.15479/AT:ISTA:th6179","degree_awarded":"PhD","article_processing_charge":"No","alternative_title":["ISTA Thesis"],"oa":1,"publication_identifier":{"issn":["2663-337X"]},"publisher":"Institute of Science and Technology Austria","related_material":{"record":[{"id":"6184","relation":"part_of_dissertation","status":"public"},{"status":"public","id":"6186","relation":"part_of_dissertation"},{"status":"public","relation":"part_of_dissertation","id":"6185"},{"relation":"part_of_dissertation","id":"1012","status":"public"},{"status":"public","relation":"part_of_dissertation","id":"1144"},{"id":"6182","relation":"part_of_dissertation","status":"public"}]},"date_updated":"2026-07-29T13:46:20Z","OA_place":"publisher","oa_version":"Published Version","page":"375","file":[{"date_created":"2019-03-28T08:53:52Z","file_name":"2019_Schroeder_Thesis.tar.gz","access_level":"closed","content_type":"application/x-gzip","relation":"source_file","creator":"dernst","checksum":"6926f66f28079a81c4937e3764be00fc","file_id":"6180","file_size":7104482,"date_updated":"2020-07-14T12:47:21Z"},{"date_created":"2019-03-28T08:53:52Z","access_level":"open_access","creator":"dernst","content_type":"application/pdf","relation":"main_file","file_name":"2019_Schroeder_Thesis.pdf","file_size":4228794,"checksum":"7d0ebb8d1207e89768cdd497a5bf80fb","file_id":"6181","date_updated":"2020-07-14T12:47:21Z"}],"doi_confirm":"1","year":"2019"},{"ddc":["510"],"article_type":"original","intvolume":"         7","month":"03","publication_status":"published","author":[{"orcid":"0000-0001-5366-9603","last_name":"Erdös","first_name":"László","id":"4DBD5372-F248-11E8-B48F-1D18A9856A87","full_name":"Erdös, László"},{"first_name":"Torben H","last_name":"Krüger","orcid":"0000-0002-4821-3297","id":"3020C786-F248-11E8-B48F-1D18A9856A87","full_name":"Krüger, Torben H"},{"full_name":"Schröder, Dominik J","id":"408ED176-F248-11E8-B48F-1D18A9856A87","first_name":"Dominik J","last_name":"Schröder","orcid":"0000-0002-2904-1856"}],"language":[{"iso":"eng"}],"ec_funded":1,"project":[{"call_identifier":"FP7","_id":"258DCDE6-B435-11E9-9278-68D0E5697425","name":"Random matrices, universality and disordered quantum systems","grant_number":"338804"}],"article_processing_charge":"No","arxiv":1,"corr_author":"1","fulldoi":"https://doi.org/10.1017/fms.2019.2","oa":1,"publication_identifier":{"eissn":["2050-5094"]},"doi":"10.1017/fms.2019.2","oa_version":"Published Version","quality_controlled":"1","date_updated":"2026-07-29T13:46:19Z","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"related_material":{"record":[{"id":"6179","relation":"dissertation_contains","status":"public"}]},"publisher":"Cambridge University Press","publication":"Forum of Mathematics, Sigma","year":"2019","file":[{"checksum":"933a472568221c73b2c3ce8c87bf6d15","file_id":"6883","file_size":1520344,"date_updated":"2020-07-14T12:47:22Z","date_created":"2019-09-17T14:24:13Z","file_name":"2019_Forum_Erdoes.pdf","creator":"dernst","content_type":"application/pdf","relation":"main_file","access_level":"open_access"}],"volume":7,"external_id":{"arxiv":["1705.10661"],"isi":["000488847100001"]},"file_date_updated":"2020-07-14T12:47:22Z","has_accepted_license":"1","_id":"6182","abstract":[{"text":"We consider large random matrices with a general slowly decaying correlation among its entries. We prove universality of the local eigenvalue statistics and optimal local laws for the resolvent away from the spectral edges, generalizing the recent result of Ajanki et al. [‘Stability of the matrix Dyson equation and random matrices with correlations’, Probab. Theory Related Fields 173(1–2) (2019), 293–373] to allow slow correlation decay and arbitrary expectation. The main novel tool is\r\na systematic diagrammatic control of a multivariate cumulant expansion.","lang":"eng"}],"article_number":"e8","status":"public","date_published":"2019-03-26T00:00:00Z","department":[{"_id":"LaEr"}],"isi":1,"scopus_import":"1","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","day":"26","title":"Random matrices with slow correlation decay","type":"journal_article","citation":{"ieee":"L. Erdös, T. H. Krüger, and D. J. Schröder, “Random matrices with slow correlation decay,” <i>Forum of Mathematics, Sigma</i>, vol. 7. Cambridge University Press, 2019.","short":"L. Erdös, T.H. Krüger, D.J. Schröder, Forum of Mathematics, Sigma 7 (2019).","apa":"Erdös, L., Krüger, T. H., &#38; Schröder, D. J. (2019). Random matrices with slow correlation decay. <i>Forum of Mathematics, Sigma</i>. Cambridge University Press. <a href=\"https://doi.org/10.1017/fms.2019.2\">https://doi.org/10.1017/fms.2019.2</a>","mla":"Erdös, László, et al. “Random Matrices with Slow Correlation Decay.” <i>Forum of Mathematics, Sigma</i>, vol. 7, e8, Cambridge University Press, 2019, doi:<a href=\"https://doi.org/10.1017/fms.2019.2\">10.1017/fms.2019.2</a>.","ista":"Erdös L, Krüger TH, Schröder DJ. 2019. Random matrices with slow correlation decay. Forum of Mathematics, Sigma. 7, e8.","ama":"Erdös L, Krüger TH, Schröder DJ. Random matrices with slow correlation decay. <i>Forum of Mathematics, Sigma</i>. 2019;7. doi:<a href=\"https://doi.org/10.1017/fms.2019.2\">10.1017/fms.2019.2</a>","chicago":"Erdös, László, Torben H Krüger, and Dominik J Schröder. “Random Matrices with Slow Correlation Decay.” <i>Forum of Mathematics, Sigma</i>. Cambridge University Press, 2019. <a href=\"https://doi.org/10.1017/fms.2019.2\">https://doi.org/10.1017/fms.2019.2</a>."},"date_created":"2019-03-28T09:05:23Z"},{"oa_version":"Preprint","date_updated":"2026-07-29T13:46:19Z","quality_controlled":"1","publication":"Pure and Applied Analysis ","publisher":"MSP","related_material":{"record":[{"status":"public","id":"6179","relation":"dissertation_contains"}]},"year":"2019","page":"615–707","main_file_link":[{"url":"https://arxiv.org/abs/1811.04055","open_access":"1"}],"volume":1,"external_id":{"arxiv":["1811.04055"]},"article_type":"original","publication_status":"published","intvolume":"         1","month":"10","language":[{"iso":"eng"}],"ec_funded":1,"project":[{"call_identifier":"FP7","_id":"258DCDE6-B435-11E9-9278-68D0E5697425","grant_number":"338804","name":"Random matrices, universality and disordered quantum systems"},{"call_identifier":"H2020","_id":"2564DBCA-B435-11E9-9278-68D0E5697425","name":"International IST Doctoral Program","grant_number":"665385"}],"author":[{"last_name":"Cipolloni","first_name":"Giorgio","orcid":"0000-0002-4901-7992","id":"42198EFA-F248-11E8-B48F-1D18A9856A87","full_name":"Cipolloni, Giorgio"},{"full_name":"Erdös, László","orcid":"0000-0001-5366-9603","first_name":"László","last_name":"Erdös","id":"4DBD5372-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Krüger, Torben H","id":"3020C786-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4821-3297","last_name":"Krüger","first_name":"Torben H"},{"full_name":"Schröder, Dominik J","first_name":"Dominik J","last_name":"Schröder","orcid":"0000-0002-2904-1856","id":"408ED176-F248-11E8-B48F-1D18A9856A87"}],"publication_identifier":{"eissn":["2578-5885"],"issn":["2578-5893"]},"oa":1,"arxiv":1,"article_processing_charge":"No","fulldoi":"https://doi.org/10.2140/paa.2019.1.615","doi":"10.2140/paa.2019.1.615","scopus_import":"1","issue":"4","day":"12","title":"Cusp universality for random matrices, II: The real symmetric case","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","type":"journal_article","date_created":"2019-03-28T10:21:17Z","citation":{"chicago":"Cipolloni, Giorgio, László Erdös, Torben H Krüger, and Dominik J Schröder. “Cusp Universality for Random Matrices, II: The Real Symmetric Case.” <i>Pure and Applied Analysis </i>. MSP, 2019. <a href=\"https://doi.org/10.2140/paa.2019.1.615\">https://doi.org/10.2140/paa.2019.1.615</a>.","ama":"Cipolloni G, Erdös L, Krüger TH, Schröder DJ. Cusp universality for random matrices, II: The real symmetric case. <i>Pure and Applied Analysis </i>. 2019;1(4):615–707. doi:<a href=\"https://doi.org/10.2140/paa.2019.1.615\">10.2140/paa.2019.1.615</a>","ista":"Cipolloni G, Erdös L, Krüger TH, Schröder DJ. 2019. Cusp universality for random matrices, II: The real symmetric case. Pure and Applied Analysis . 1(4), 615–707.","ieee":"G. Cipolloni, L. Erdös, T. H. Krüger, and D. J. Schröder, “Cusp universality for random matrices, II: The real symmetric case,” <i>Pure and Applied Analysis </i>, vol. 1, no. 4. MSP, pp. 615–707, 2019.","short":"G. Cipolloni, L. Erdös, T.H. Krüger, D.J. Schröder, Pure and Applied Analysis  1 (2019) 615–707.","apa":"Cipolloni, G., Erdös, L., Krüger, T. H., &#38; Schröder, D. J. (2019). Cusp universality for random matrices, II: The real symmetric case. <i>Pure and Applied Analysis </i>. MSP. <a href=\"https://doi.org/10.2140/paa.2019.1.615\">https://doi.org/10.2140/paa.2019.1.615</a>","mla":"Cipolloni, Giorgio, et al. “Cusp Universality for Random Matrices, II: The Real Symmetric Case.” <i>Pure and Applied Analysis </i>, vol. 1, no. 4, MSP, 2019, pp. 615–707, doi:<a href=\"https://doi.org/10.2140/paa.2019.1.615\">10.2140/paa.2019.1.615</a>."},"abstract":[{"lang":"eng","text":"We prove that the local eigenvalue statistics of real symmetric Wigner-type\r\nmatrices near the cusp points of the eigenvalue density are universal. Together\r\nwith the companion paper [arXiv:1809.03971], which proves the same result for\r\nthe complex Hermitian symmetry class, this completes the last remaining case of\r\nthe Wigner-Dyson-Mehta universality conjecture after bulk and edge\r\nuniversalities have been established in the last years. We extend the recent\r\nDyson Brownian motion analysis at the edge [arXiv:1712.03881] to the cusp\r\nregime using the optimal local law from [arXiv:1809.03971] and the accurate\r\nlocal shape analysis of the density from [arXiv:1506.05095, arXiv:1804.07752].\r\nWe also present a PDE-based method to improve the estimate on eigenvalue\r\nrigidity via the maximum principle of the heat flow related to the Dyson\r\nBrownian motion."}],"_id":"6186","status":"public","department":[{"_id":"LaEr"}],"date_published":"2019-10-12T00:00:00Z"},{"_id":"7479","abstract":[{"lang":"eng","text":"Multi-exit architectures, in which a stack of processing layers is interleaved with early output layers, allow the processing of a test example to stop early and thus save computation time and/or energy.  In this work, we propose a new training procedure for multi-exit architectures based on the principle of knowledge distillation. The method encourage searly exits to mimic later, more accurate exits, by matching their output probabilities.\r\nExperiments  on  CIFAR100  and  ImageNet  show  that distillation-based training significantly improves the accuracy of early exits while maintaining state-of-the-art accuracy  for  late  ones.   The  method  is  particularly  beneficial when  training  data  is  limited  and  it  allows  a  straightforward extension to semi-supervised learning,i.e. making use of unlabeled data at training time. Moreover, it takes only afew lines to implement and incurs almost no computational overhead at training time, and none at all at test time."}],"has_accepted_license":"1","file_date_updated":"2020-07-14T12:47:59Z","department":[{"_id":"ChLa"}],"date_published":"2019-10-01T00:00:00Z","status":"public","day":"01","title":"Distillation-based training for multi-exit architectures","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","isi":1,"scopus_import":"1","date_created":"2020-02-11T09:06:57Z","citation":{"apa":"Phuong, M., &#38; Lampert, C. (2019). Distillation-based training for multi-exit architectures. In <i>IEEE International Conference on Computer Vision</i> (Vol. 2019–October, pp. 1355–1364). Seoul, Korea: IEEE. <a href=\"https://doi.org/10.1109/ICCV.2019.00144\">https://doi.org/10.1109/ICCV.2019.00144</a>","ieee":"M. Phuong and C. Lampert, “Distillation-based training for multi-exit architectures,” in <i>IEEE International Conference on Computer Vision</i>, Seoul, Korea, 2019, vol. 2019–October, pp. 1355–1364.","short":"M. Phuong, C. Lampert, in:, IEEE International Conference on Computer Vision, IEEE, 2019, pp. 1355–1364.","mla":"Phuong, Mary, and Christoph Lampert. “Distillation-Based Training for Multi-Exit Architectures.” <i>IEEE International Conference on Computer Vision</i>, vol. 2019–October, IEEE, 2019, pp. 1355–64, doi:<a href=\"https://doi.org/10.1109/ICCV.2019.00144\">10.1109/ICCV.2019.00144</a>.","ista":"Phuong M, Lampert C. 2019. Distillation-based training for multi-exit architectures. IEEE International Conference on Computer Vision. ICCV: International Conference on Computer Vision vol. 2019–October, 1355–1364.","chicago":"Phuong, Mary, and Christoph Lampert. “Distillation-Based Training for Multi-Exit Architectures.” In <i>IEEE International Conference on Computer Vision</i>, 2019–October:1355–64. IEEE, 2019. <a href=\"https://doi.org/10.1109/ICCV.2019.00144\">https://doi.org/10.1109/ICCV.2019.00144</a>.","ama":"Phuong M, Lampert C. Distillation-based training for multi-exit architectures. In: <i>IEEE International Conference on Computer Vision</i>. Vol 2019-October. IEEE; 2019:1355-1364. doi:<a href=\"https://doi.org/10.1109/ICCV.2019.00144\">10.1109/ICCV.2019.00144</a>"},"type":"conference","language":[{"iso":"eng"}],"ec_funded":1,"project":[{"_id":"2532554C-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","grant_number":"308036","name":"Lifelong Learning of Visual Scene Understanding"}],"author":[{"full_name":"Bui Thi Mai, Phuong","id":"3EC6EE64-F248-11E8-B48F-1D18A9856A87","last_name":"Bui Thi Mai","first_name":"Phuong"},{"id":"40C20FD2-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8622-7887","last_name":"Lampert","first_name":"Christoph","full_name":"Lampert, Christoph"}],"ddc":["000"],"month":"10","publication_status":"published","conference":{"start_date":"2019-10-27","name":"ICCV: International Conference on Computer Vision","end_date":"2019-11-02","location":"Seoul, Korea"},"doi":"10.1109/ICCV.2019.00144","oa":1,"publication_identifier":{"issn":["1550-5499"],"isbn":["9781728148038"]},"article_processing_charge":"No","fulldoi":"https://doi.org/10.1109/ICCV.2019.00144","publisher":"IEEE","related_material":{"record":[{"status":"public","id":"9418","relation":"dissertation_contains"}]},"publication":"IEEE International Conference on Computer Vision","oa_version":"Submitted Version","date_updated":"2026-07-30T05:33:51Z","quality_controlled":"1","page":"1355-1364","volume":"2019-October","file":[{"access_level":"open_access","content_type":"application/pdf","relation":"main_file","creator":"bphuong","file_name":"main.pdf","date_created":"2020-02-11T09:06:39Z","date_updated":"2020-07-14T12:47:59Z","file_size":735768,"file_id":"7480","checksum":"7b77fb5c2d27c4c37a7612ba46a66117"}],"external_id":{"isi":["000531438101047"]},"year":"2019"},{"publisher":"Springer Nature","publication":"Nature Ecology & Evolution","date_updated":"2026-07-30T06:31:13Z","quality_controlled":"1","OA_place":"repository","extern":"1","oa_version":"Submitted Version","volume":3,"page":"1309-1320","main_file_link":[{"url":"https://www.osti.gov/servlets/purl/1569379","open_access":"1"}],"year":"2019","author":[{"first_name":"Jian","last_name":"Song","full_name":"Song, Jian"},{"full_name":"Wan, Shiqiang","last_name":"Wan","first_name":"Shiqiang"},{"full_name":"Piao, Shilong","last_name":"Piao","first_name":"Shilong"},{"first_name":"Alan K.","last_name":"Knapp","full_name":"Knapp, Alan K."},{"full_name":"Classen, Aimée T.","first_name":"Aimée T.","last_name":"Classen"},{"full_name":"Vicca, Sara","first_name":"Sara","last_name":"Vicca"},{"last_name":"Ciais","first_name":"Philippe","full_name":"Ciais, Philippe"},{"full_name":"Hovenden, Mark J.","last_name":"Hovenden","first_name":"Mark J."},{"full_name":"Leuzinger, Sebastian","last_name":"Leuzinger","first_name":"Sebastian"},{"first_name":"Claus","last_name":"Beier","full_name":"Beier, Claus"},{"full_name":"Kardol, Paul","last_name":"Kardol","first_name":"Paul"},{"first_name":"Jianyang","last_name":"Xia","full_name":"Xia, Jianyang"},{"full_name":"Liu, Qiang","last_name":"Liu","first_name":"Qiang"},{"first_name":"Jingyi","last_name":"Ru","full_name":"Ru, Jingyi"},{"full_name":"Zhou, Zhenxing","first_name":"Zhenxing","last_name":"Zhou"},{"first_name":"Yiqi","last_name":"Luo","full_name":"Luo, Yiqi"},{"full_name":"Guo, Dali","first_name":"Dali","last_name":"Guo"},{"first_name":"J.","last_name":"Adam Langley","full_name":"Adam Langley, J."},{"last_name":"Zscheischler","first_name":"Jakob","full_name":"Zscheischler, Jakob"},{"last_name":"Dukes","first_name":"Jeffrey S.","full_name":"Dukes, Jeffrey S."},{"last_name":"Tang","first_name":"Jianwu","full_name":"Tang, Jianwu"},{"full_name":"Chen, Jiquan","first_name":"Jiquan","last_name":"Chen"},{"last_name":"Hofmockel","first_name":"Kirsten S.","full_name":"Hofmockel, Kirsten S."},{"full_name":"Kueppers, Lara M.","last_name":"Kueppers","first_name":"Lara M."},{"last_name":"Rustad","first_name":"Lindsey","full_name":"Rustad, Lindsey"},{"first_name":"Lingli","last_name":"Liu","full_name":"Liu, Lingli"},{"full_name":"Smith, Melinda D.","first_name":"Melinda D.","last_name":"Smith"},{"full_name":"Templer, Pamela H.","first_name":"Pamela H.","last_name":"Templer"},{"full_name":"Quinn Thomas, R.","first_name":"R.","last_name":"Quinn Thomas"},{"last_name":"Norby","first_name":"Richard J.","full_name":"Norby, Richard J."},{"last_name":"Phillips","first_name":"Richard P.","full_name":"Phillips, Richard P."},{"last_name":"Niu","first_name":"Shuli","full_name":"Niu, Shuli"},{"full_name":"Fatichi, Simone","last_name":"Fatichi","first_name":"Simone","id":"cf8e546b-a9b0-11f0-a43b-aa89ed1b56d6"},{"first_name":"Yingping","last_name":"Wang","full_name":"Wang, Yingping"},{"last_name":"Shao","first_name":"Pengshuai","full_name":"Shao, Pengshuai"},{"full_name":"Han, Hongyan","last_name":"Han","first_name":"Hongyan"},{"full_name":"Wang, Dandan","last_name":"Wang","first_name":"Dandan"},{"first_name":"Lingjie","last_name":"Lei","full_name":"Lei, Lingjie"},{"last_name":"Wang","first_name":"Jiali","full_name":"Wang, Jiali"},{"last_name":"Li","first_name":"Xiaona","full_name":"Li, Xiaona"},{"full_name":"Zhang, Qian","last_name":"Zhang","first_name":"Qian"},{"full_name":"Li, Xiaoming","first_name":"Xiaoming","last_name":"Li"},{"last_name":"Su","first_name":"Fanglong","full_name":"Su, Fanglong"},{"full_name":"Liu, Bin","first_name":"Bin","last_name":"Liu"},{"full_name":"Yang, Fan","last_name":"Yang","first_name":"Fan"},{"first_name":"Gaigai","last_name":"Ma","full_name":"Ma, Gaigai"},{"full_name":"Li, Guoyong","first_name":"Guoyong","last_name":"Li"},{"first_name":"Yanchun","last_name":"Liu","full_name":"Liu, Yanchun"},{"first_name":"Yinzhan","last_name":"Liu","full_name":"Liu, Yinzhan"},{"full_name":"Yang, Zhongling","last_name":"Yang","first_name":"Zhongling"},{"first_name":"Kesheng","last_name":"Zhang","full_name":"Zhang, Kesheng"},{"last_name":"Miao","first_name":"Yuan","full_name":"Miao, Yuan"},{"full_name":"Hu, Mengjun","last_name":"Hu","first_name":"Mengjun"},{"full_name":"Yan, Chuang","first_name":"Chuang","last_name":"Yan"},{"full_name":"Zhang, Ang","first_name":"Ang","last_name":"Zhang"},{"full_name":"Zhong, Mingxing","first_name":"Mingxing","last_name":"Zhong"},{"full_name":"Hui, Yan","last_name":"Hui","first_name":"Yan"},{"full_name":"Li, Ying","last_name":"Li","first_name":"Ying"},{"full_name":"Zheng, Mengmei","first_name":"Mengmei","last_name":"Zheng"}],"language":[{"iso":"eng"}],"OA_type":"green","month":"09","publication_status":"published","intvolume":"         3","article_type":"original","doi":"10.1038/s41559-019-0958-3","fulldoi":"https://doi.org/10.1038/s41559-019-0958-3","article_processing_charge":"No","publication_identifier":{"eissn":["2397-334X"]},"oa":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"A meta-analysis of 1,119 manipulative experiments on terrestrial carbon-cycling responses to global change","day":"01","issue":"9","scopus_import":"1","date_created":"2026-07-27T12:30:23Z","citation":{"ieee":"J. Song <i>et al.</i>, “A meta-analysis of 1,119 manipulative experiments on terrestrial carbon-cycling responses to global change,” <i>Nature Ecology &#38; Evolution</i>, vol. 3, no. 9. Springer Nature, pp. 1309–1320, 2019.","apa":"Song, J., Wan, S., Piao, S., Knapp, A. K., Classen, A. T., Vicca, S., … Zheng, M. (2019). A meta-analysis of 1,119 manipulative experiments on terrestrial carbon-cycling responses to global change. <i>Nature Ecology &#38; Evolution</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41559-019-0958-3\">https://doi.org/10.1038/s41559-019-0958-3</a>","short":"J. Song, S. Wan, S. Piao, A.K. Knapp, A.T. Classen, S. Vicca, P. Ciais, M.J. Hovenden, S. Leuzinger, C. Beier, P. Kardol, J. Xia, Q. Liu, J. Ru, Z. Zhou, Y. Luo, D. Guo, J. Adam Langley, J. Zscheischler, J.S. Dukes, J. Tang, J. Chen, K.S. Hofmockel, L.M. Kueppers, L. Rustad, L. Liu, M.D. Smith, P.H. Templer, R. Quinn Thomas, R.J. Norby, R.P. Phillips, S. Niu, S. Fatichi, Y. Wang, P. Shao, H. Han, D. Wang, L. Lei, J. Wang, X. Li, Q. Zhang, X. Li, F. Su, B. Liu, F. Yang, G. Ma, G. Li, Y. Liu, Y. Liu, Z. Yang, K. Zhang, Y. Miao, M. Hu, C. Yan, A. Zhang, M. Zhong, Y. Hui, Y. Li, M. Zheng, Nature Ecology &#38; Evolution 3 (2019) 1309–1320.","mla":"Song, Jian, et al. “A Meta-Analysis of 1,119 Manipulative Experiments on Terrestrial Carbon-Cycling Responses to Global Change.” <i>Nature Ecology &#38; Evolution</i>, vol. 3, no. 9, Springer Nature, 2019, pp. 1309–20, doi:<a href=\"https://doi.org/10.1038/s41559-019-0958-3\">10.1038/s41559-019-0958-3</a>.","chicago":"Song, Jian, Shiqiang Wan, Shilong Piao, Alan K. Knapp, Aimée T. Classen, Sara Vicca, Philippe Ciais, et al. “A Meta-Analysis of 1,119 Manipulative Experiments on Terrestrial Carbon-Cycling Responses to Global Change.” <i>Nature Ecology &#38; Evolution</i>. Springer Nature, 2019. <a href=\"https://doi.org/10.1038/s41559-019-0958-3\">https://doi.org/10.1038/s41559-019-0958-3</a>.","ama":"Song J, Wan S, Piao S, et al. A meta-analysis of 1,119 manipulative experiments on terrestrial carbon-cycling responses to global change. <i>Nature Ecology &#38; Evolution</i>. 2019;3(9):1309-1320. doi:<a href=\"https://doi.org/10.1038/s41559-019-0958-3\">10.1038/s41559-019-0958-3</a>","ista":"Song J, Wan S, Piao S, Knapp AK, Classen AT, Vicca S, Ciais P, Hovenden MJ, Leuzinger S, Beier C, Kardol P, Xia J, Liu Q, Ru J, Zhou Z, Luo Y, Guo D, Adam Langley J, Zscheischler J, Dukes JS, Tang J, Chen J, Hofmockel KS, Kueppers LM, Rustad L, Liu L, Smith MD, Templer PH, Quinn Thomas R, Norby RJ, Phillips RP, Niu S, Fatichi S, Wang Y, Shao P, Han H, Wang D, Lei L, Wang J, Li X, Zhang Q, Li X, Su F, Liu B, Yang F, Ma G, Li G, Liu Y, Liu Y, Yang Z, Zhang K, Miao Y, Hu M, Yan C, Zhang A, Zhong M, Hui Y, Li Y, Zheng M. 2019. A meta-analysis of 1,119 manipulative experiments on terrestrial carbon-cycling responses to global change. Nature Ecology &#38; Evolution. 3(9), 1309–1320."},"type":"journal_article","das_tickbox":"1","_id":"22454","abstract":[{"lang":"eng","text":"Direct quantification of terrestrial biosphere responses to global change is crucial for projections of future climate change in Earth system models. Here, we synthesized ecosystem carbon-cycling data from 1,119 experiments performed over the past four decades concerning changes in temperature, precipitation, CO2 and nitrogen across major terrestrial vegetation types of the world. Most experiments manipulated single rather than multiple global change drivers in temperate ecosystems of the USA, Europe and China. The magnitudes of warming and elevated CO2 treatments were consistent with the ranges of future projections, whereas those of precipitation changes and nitrogen inputs often exceeded the projected ranges. Increases in global change drivers consistently accelerated, but decreased precipitation slowed down carbon-cycle processes. Nonlinear (including synergistic and antagonistic) effects among global change drivers were rare. Belowground carbon allocation responded negatively to increased precipitation and nitrogen addition and positively to decreased precipitation and elevated CO2. The sensitivities of carbon variables to multiple global change drivers depended on the background climate and ecosystem condition, suggesting that Earth system models should be evaluated using site-specific conditions for best uses of this large dataset. Together, this synthesis underscores an urgent need to explore the interactions among multiple global change drivers in underrepresented regions such as semi-arid ecosystems, forests in the tropics and subtropics, and Arctic tundra when forecasting future terrestrial carbon-climate feedback."}],"date_published":"2019-09-01T00:00:00Z","status":"public"}]