[{"publication":"Brain Communications","issue":"1","file_date_updated":"2025-08-05T11:54:23Z","day":"01","_id":"18987","publication_identifier":{"eissn":["2632-1297"]},"acknowledgement":"We thank all individuals and relatives for consent to be part of the study. Families 1–4, 7, were collected as part of the SYNaPS Study Group collaboration funded by The Wellcome Trust and strategic award (Synaptopathies) funding (WT093205 MA and WT104033AIA), and research was conducted as part of the Queen Square Genomics group at the University College London, supported by the National Institute for Health Research University College London Hospitals Biomedical Research Centre. We are also grateful to Queen Square Genomics at the Institute of Neurology University College London, supported by the National Institute for Health Research University College London Hospitals Biomedical Research Centre, for the bioinformatics support. For the purpose of Open Access, the author has applied a CC BY public copyright license to any Author Accepted Manuscript version arising from this submission.\r\nThis study was funded by the Medical Research Council (MR/S01165X/1, MR/S005021/1, G0601943). The Medical Research Council (MR/S01165X/1, MR/S005021/1, MRC ICGNMD), Wellcome Trust 221951/Z/20/Z, Global Parkinson’s Genetics Program, Aligning Science Across Parkinson’s, The Michael J. Fox Foundation, The National Institute for Health Research University College London Hospitals Biomedical Research Centre, Rosetree Trust, Multiple System Atrophy Trust, Brain Research UK, Sparks Great Ormond Street Hospital Charity, Muscular Dystrophy, Muscular Dystrophy Association United States of America, and King Baudouin Foundation. H.T. was supported by the European Union’s Seventh Framework Programme for research, technological development and demonstration under grant agreement no. 608473. M.S.A.-H. is funded by the Science and Technology Development Fund Academy of Science Research and Technology Egypt (Grant number: 33492, Ethical approval number: 20066). R.W.T. is funded by the Wellcome Centre for Mitochondrial Research (203105/Z/16/Z), the Mitochondrial Disease Patient Cohort (UK) (G0800674), the Medical Research Council International Centre for Genomic Medicine in Neuromuscular Disease (MR/S005021/1), the Medical Research Council (MR/W019027/1), the Lily Foundation, Mito Foundation, the Pathological Society, LifeArc, the UK National Institute for Health Research Biomedical Research Centre for Ageing and Age-related disease award to the Newcastle upon Tyne Foundation Hospitals NHS Trust and the UK NHS Highly Specialised Service for Rare Mitochondrial Disorders of Adults and Children. H.H. and R.K. are supported by Global Parkinson’s Genetic Program and The Michael J. Fox Foundation Grant ID: MJFF-022153.","doi":"10.1093/braincomms/fcae453","department":[{"_id":"LeSa"}],"type":"journal_article","citation":{"ieee":"R. Kaiyrzhanov <i>et al.</i>, “Biallelic NDUFA13 variants lead to a neurodevelopmental phenotype with gradual neurological impairment,” <i>Brain Communications</i>, vol. 7, no. 1. Oxford University Press, 2025.","chicago":"Kaiyrzhanov, Rauan, Kyle Thompson, Stephanie Efthymiou, Askhat Mukushev, Akbota Zharylkassyn, Chitra Prasad, Ehsan Ghayoor Karimiani, et al. “Biallelic NDUFA13 Variants Lead to a Neurodevelopmental Phenotype with Gradual Neurological Impairment.” <i>Brain Communications</i>. Oxford University Press, 2025. <a href=\"https://doi.org/10.1093/braincomms/fcae453\">https://doi.org/10.1093/braincomms/fcae453</a>.","short":"R. Kaiyrzhanov, K. Thompson, S. Efthymiou, A. Mukushev, A. Zharylkassyn, C. Prasad, E.G. Karimiani, J.R. Alvi, D. Niyazov, A. Alahmad, M. Babaei, H. Tajsharghi, B. Albash, A. Alaqeel, M. Charif, N. Hashemi, M. Heidari, S.M. Kalantar, G. Lenaers, M.Y.V. Mehrjardi, V.M. Srinivasan, V.K. Gowda, S.H. Mirabutalebi, D.A. Carere, M. Movahedinia, D. Murphy, R. Mcfarland, M.S. Abdel-Hamid, R.M. Elhossini, S. Alavi, M. Napier, A. Belanger-Quintana, A.N. Prasad, J. Jakobczyk, A. Roubertie, T. Rupar, T. Sultan, M.B. Toosi, L.A. Sazanov, M. Severino, H. Houlden, R.W. Taylor, R. Maroofian, Brain Communications 7 (2025).","mla":"Kaiyrzhanov, Rauan, et al. “Biallelic NDUFA13 Variants Lead to a Neurodevelopmental Phenotype with Gradual Neurological Impairment.” <i>Brain Communications</i>, vol. 7, no. 1, fcae453, Oxford University Press, 2025, doi:<a href=\"https://doi.org/10.1093/braincomms/fcae453\">10.1093/braincomms/fcae453</a>.","ama":"Kaiyrzhanov R, Thompson K, Efthymiou S, et al. Biallelic NDUFA13 variants lead to a neurodevelopmental phenotype with gradual neurological impairment. <i>Brain Communications</i>. 2025;7(1). doi:<a href=\"https://doi.org/10.1093/braincomms/fcae453\">10.1093/braincomms/fcae453</a>","apa":"Kaiyrzhanov, R., Thompson, K., Efthymiou, S., Mukushev, A., Zharylkassyn, A., Prasad, C., … Maroofian, R. (2025). Biallelic NDUFA13 variants lead to a neurodevelopmental phenotype with gradual neurological impairment. <i>Brain Communications</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/braincomms/fcae453\">https://doi.org/10.1093/braincomms/fcae453</a>","ista":"Kaiyrzhanov R, Thompson K, Efthymiou S, Mukushev A, Zharylkassyn A, Prasad C, Karimiani EG, Alvi JR, Niyazov D, Alahmad A, Babaei M, Tajsharghi H, Albash B, Alaqeel A, Charif M, Hashemi N, Heidari M, Kalantar SM, Lenaers G, Mehrjardi MYV, Srinivasan VM, Gowda VK, Mirabutalebi SH, Carere DA, Movahedinia M, Murphy D, Mcfarland R, Abdel-Hamid MS, Elhossini RM, Alavi S, Napier M, Belanger-Quintana A, Prasad AN, Jakobczyk J, Roubertie A, Rupar T, Sultan T, Toosi MB, Sazanov LA, Severino M, Houlden H, Taylor RW, Maroofian R. 2025. Biallelic NDUFA13 variants lead to a neurodevelopmental phenotype with gradual neurological impairment. Brain Communications. 7(1), fcae453."},"oa":1,"article_processing_charge":"Yes","OA_place":"publisher","publication_status":"published","file":[{"content_type":"application/pdf","checksum":"bdf39b64d1c1d833a20b62836751fe44","file_name":"2025_BrainComm_Kaiyrzhanov.pdf","file_size":1420646,"date_updated":"2025-08-05T11:54:23Z","success":1,"file_id":"20126","creator":"dernst","access_level":"open_access","relation":"main_file","date_created":"2025-08-05T11:54:23Z"}],"oa_version":"Published Version","month":"01","date_updated":"2025-08-05T11:55:15Z","abstract":[{"lang":"eng","text":"Biallelic variants in NADH (nicotinamide adenine dinucleotide (NAD) + hydrogen (H))-ubiquinone oxidoreductase 1 alpha subcomplex 13 have been linked to mitochondrial complex I deficiency, nuclear type 28, based on three affected individuals from two families. With only two families reported, the clinical and molecular spectrum of NADH-ubiquinone oxidoreductase 1 alpha subcomplex 13–related diseases remains unclear. We report 10 additional affected individuals from nine independent families, identifying four missense variants (including recurrent c.170G > A) and three ultra-rare or novel predicted loss-of-function biallelic variants. Updated clinical–radiological data from previously reported families and a literature review compiling clinical features of all reported patients with isolated complex I deficiency caused by 43 genes encoding complex I subunits and assembly factors are also provided. Our cohort (mean age 7.8 ± 5.4 years; range 2.5–18) predominantly presented a moderate-to-severe neurodevelopmental syndrome with oculomotor abnormalities (84%), spasticity/hypertonia (83%), hypotonia (69%), cerebellar ataxia (66%), movement disorders (58%) and epilepsy (46%). Neuroimaging revealed bilateral symmetric T2 hyperintense substantia nigra lesions (91.6%) and optic nerve atrophy (66.6%). Protein modeling suggests missense variants destabilize a critical junction between the hydrophilic and membrane arms of complex I. Fibroblasts from two patients showed reduced complex I activity and compensatory complex IV activity increase. This study characterizes NADH-ubiquinone oxidoreductase 1 alpha subcomplex 13–related disease in 13 individuals, highlighting genotype–phenotype correlations."}],"year":"2025","scopus_import":"1","publisher":"Oxford University Press","date_published":"2025-01-01T00:00:00Z","title":"Biallelic NDUFA13 variants lead to a neurodevelopmental phenotype with gradual neurological impairment","quality_controlled":"1","license":"https://creativecommons.org/licenses/by/4.0/","DOAJ_listed":"1","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"status":"public","intvolume":"         7","author":[{"first_name":"Rauan","full_name":"Kaiyrzhanov, Rauan","last_name":"Kaiyrzhanov"},{"last_name":"Thompson","first_name":"Kyle","full_name":"Thompson, Kyle"},{"last_name":"Efthymiou","first_name":"Stephanie","full_name":"Efthymiou, Stephanie"},{"first_name":"Askhat","full_name":"Mukushev, Askhat","last_name":"Mukushev"},{"last_name":"Zharylkassyn","first_name":"Akbota","full_name":"Zharylkassyn, Akbota"},{"full_name":"Prasad, Chitra","first_name":"Chitra","last_name":"Prasad"},{"full_name":"Karimiani, Ehsan Ghayoor","first_name":"Ehsan Ghayoor","last_name":"Karimiani"},{"last_name":"Alvi","full_name":"Alvi, Javeria Raza","first_name":"Javeria Raza"},{"full_name":"Niyazov, Dmitriy","first_name":"Dmitriy","last_name":"Niyazov"},{"last_name":"Alahmad","first_name":"Ahmad","full_name":"Alahmad, Ahmad"},{"first_name":"Meisam","full_name":"Babaei, Meisam","last_name":"Babaei"},{"first_name":"Homa","full_name":"Tajsharghi, Homa","last_name":"Tajsharghi"},{"full_name":"Albash, Buthaina","first_name":"Buthaina","last_name":"Albash"},{"last_name":"Alaqeel","first_name":"Ahmad","full_name":"Alaqeel, Ahmad"},{"last_name":"Charif","full_name":"Charif, Majida","first_name":"Majida"},{"full_name":"Hashemi, Narges","first_name":"Narges","last_name":"Hashemi"},{"last_name":"Heidari","full_name":"Heidari, Morteza","first_name":"Morteza"},{"first_name":"Seyed Mehdi","full_name":"Kalantar, Seyed Mehdi","last_name":"Kalantar"},{"full_name":"Lenaers, Guy","first_name":"Guy","last_name":"Lenaers"},{"full_name":"Mehrjardi, Mohammad Yahya Vahidi","first_name":"Mohammad Yahya Vahidi","last_name":"Mehrjardi"},{"full_name":"Srinivasan, Varunvenkat M.","first_name":"Varunvenkat M.","last_name":"Srinivasan"},{"first_name":"Vykuntaraju K.","full_name":"Gowda, Vykuntaraju K.","last_name":"Gowda"},{"first_name":"Seyed Hamidreza","full_name":"Mirabutalebi, Seyed Hamidreza","last_name":"Mirabutalebi"},{"first_name":"Deanna Alexis","full_name":"Carere, Deanna Alexis","last_name":"Carere"},{"last_name":"Movahedinia","full_name":"Movahedinia, Mojtaba","first_name":"Mojtaba"},{"first_name":"David","full_name":"Murphy, David","last_name":"Murphy"},{"first_name":"Robert","full_name":"Mcfarland, Robert","last_name":"Mcfarland"},{"last_name":"Abdel-Hamid","first_name":"Mohamed S.","full_name":"Abdel-Hamid, Mohamed S."},{"last_name":"Elhossini","full_name":"Elhossini, Rasha M.","first_name":"Rasha M."},{"first_name":"Shahryar","full_name":"Alavi, Shahryar","last_name":"Alavi"},{"last_name":"Napier","first_name":"Melanie","full_name":"Napier, Melanie"},{"last_name":"Belanger-Quintana","full_name":"Belanger-Quintana, Amaya","first_name":"Amaya"},{"first_name":"Asuri N.","full_name":"Prasad, Asuri N.","last_name":"Prasad"},{"last_name":"Jakobczyk","first_name":"Jessica","full_name":"Jakobczyk, Jessica"},{"full_name":"Roubertie, Agathe","first_name":"Agathe","last_name":"Roubertie"},{"first_name":"Tony","full_name":"Rupar, Tony","last_name":"Rupar"},{"last_name":"Sultan","first_name":"Tipu","full_name":"Sultan, Tipu"},{"first_name":"Mehran Beiraghi","full_name":"Toosi, Mehran Beiraghi","last_name":"Toosi"},{"full_name":"Sazanov, Leonid A","first_name":"Leonid A","orcid":"0000-0002-0977-7989","last_name":"Sazanov","id":"338D39FE-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Severino","full_name":"Severino, Mariasavina","first_name":"Mariasavina"},{"first_name":"Henry","full_name":"Houlden, Henry","last_name":"Houlden"},{"last_name":"Taylor","first_name":"Robert W.","full_name":"Taylor, Robert W."},{"last_name":"Maroofian","first_name":"Reza","full_name":"Maroofian, Reza"}],"external_id":{"pmid":["39963288"]},"language":[{"iso":"eng"}],"ddc":["570"],"date_created":"2025-02-02T23:01:55Z","article_type":"original","pmid":1,"PlanS_conform":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_number":"fcae453","volume":7,"OA_type":"gold","has_accepted_license":"1"},{"article_type":"original","corr_author":"1","ddc":["510"],"date_created":"2025-02-05T06:51:08Z","article_number":"114377","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","volume":348,"has_accepted_license":"1","OA_type":"hybrid","title":"Subchromatic numbers of powers of graphs with excluded minors","quality_controlled":"1","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"intvolume":"       348","status":"public","external_id":{"arxiv":["2306.02195"],"isi":["001401656900001"]},"author":[{"first_name":"Pedro P.","full_name":"Cortés, Pedro P.","last_name":"Cortés"},{"last_name":"Kumar","full_name":"Kumar, Pankaj","first_name":"Pankaj"},{"id":"6dc1a1be-bf1c-11ed-8d2b-d044840f49d6","last_name":"Moore","full_name":"Moore, Benjamin","first_name":"Benjamin"},{"full_name":"Ossona de Mendez, Patrice","first_name":"Patrice","last_name":"Ossona de Mendez"},{"last_name":"Quiroz","full_name":"Quiroz, Daniel A.","first_name":"Daniel A."}],"language":[{"iso":"eng"}],"OA_place":"publisher","publication_status":"published","article_processing_charge":"Yes (via OA deal)","oa_version":"Published Version","file":[{"file_size":850988,"success":1,"date_updated":"2025-05-05T12:56:12Z","content_type":"application/pdf","file_name":"2025_DiscreteMath_Cortes.pdf","checksum":"6723cbb02b6aea0d05f37d167da00c03","access_level":"open_access","creator":"dernst","date_created":"2025-05-05T12:56:12Z","relation":"main_file","file_id":"19657"}],"year":"2025","scopus_import":"1","abstract":[{"lang":"eng","text":"A k-subcolouring of a graph G is a function f : V (G) → {0,...,k − 1} such that the set of\r\nvertices coloured i induce a disjoint union of cliques. The subchromatic number, χsub(G),\r\nis the minimum k such that G admits a k-subcolouring. Nešetril, ˇ Ossona de Mendez,\r\nPilipczuk, and Zhu (2020), recently raised the problem of finding tight upper bounds for\r\nχsub(G2) when G is planar. We show that χsub(G2) ≤ 43 when G is planar, improving\r\ntheir bound of 135. We give even better bounds when the planar graph G has larger girth.\r\nMoreover, we show that χsub(G3) ≤ 95, improving the previous bound of 364. For these\r\nwe adapt some recent techniques of Almulhim and Kierstead (2022), while also extending\r\nthe decompositions of triangulated planar graphs of Van den Heuvel, Ossona de Mendez,\r\nQuiroz, Rabinovich and Siebertz (2017), to planar graphs of arbitrary girth. Note that these\r\ndecompositions are the precursors of the graph product structure theorem of planar graphs.\r\nWe give improved bounds for χsub(Gp) for all p ≥ 2, whenever G has bounded treewidth,\r\nbounded simple treewidth, bounded genus, or excludes a clique or biclique as a minor.\r\nFor this we introduce a family of parameters which form a gradation between the strong\r\nand the weak colouring numbers. We give upper bounds for these parameters for graphs\r\ncoming from such classes.\r\nFinally, we give a 2-approximation algorithm for the subchromatic number of graphs\r\nhaving a layering in which each layer has bounded cliquewidth and this layering is\r\ncomputable in polynomial time (like the class of all dth powers of planar graphs, for fixed\r\nd). This algorithm works even if the power p and the graph G is unknown."}],"month":"04","isi":1,"date_updated":"2025-09-30T10:25:15Z","arxiv":1,"publisher":"Elsevier","date_published":"2025-04-01T00:00:00Z","issue":"4","file_date_updated":"2025-05-05T12:56:12Z","publication":"Discrete Mathematics","_id":"19002","day":"01","publication_identifier":{"issn":["0012-365X"]},"acknowledgement":"We thank an anonymous referee for pointing out an error in an earlier version of Theorem 3.1. We also thank an anonymous referee for pointing out numerous typos in an earlier version of the paper.","doi":"10.1016/j.disc.2024.114377","oa":1,"type":"journal_article","department":[{"_id":"MaKw"}],"citation":{"apa":"Cortés, P. P., Kumar, P., Moore, B., Ossona de Mendez, P., &#38; Quiroz, D. A. (2025). Subchromatic numbers of powers of graphs with excluded minors. <i>Discrete Mathematics</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.disc.2024.114377\">https://doi.org/10.1016/j.disc.2024.114377</a>","ista":"Cortés PP, Kumar P, Moore B, Ossona de Mendez P, Quiroz DA. 2025. Subchromatic numbers of powers of graphs with excluded minors. Discrete Mathematics. 348(4), 114377.","short":"P.P. Cortés, P. Kumar, B. Moore, P. Ossona de Mendez, D.A. Quiroz, Discrete Mathematics 348 (2025).","mla":"Cortés, Pedro P., et al. “Subchromatic Numbers of Powers of Graphs with Excluded Minors.” <i>Discrete Mathematics</i>, vol. 348, no. 4, 114377, Elsevier, 2025, doi:<a href=\"https://doi.org/10.1016/j.disc.2024.114377\">10.1016/j.disc.2024.114377</a>.","ama":"Cortés PP, Kumar P, Moore B, Ossona de Mendez P, Quiroz DA. Subchromatic numbers of powers of graphs with excluded minors. <i>Discrete Mathematics</i>. 2025;348(4). doi:<a href=\"https://doi.org/10.1016/j.disc.2024.114377\">10.1016/j.disc.2024.114377</a>","chicago":"Cortés, Pedro P., Pankaj Kumar, Benjamin Moore, Patrice Ossona de Mendez, and Daniel A. Quiroz. “Subchromatic Numbers of Powers of Graphs with Excluded Minors.” <i>Discrete Mathematics</i>. Elsevier, 2025. <a href=\"https://doi.org/10.1016/j.disc.2024.114377\">https://doi.org/10.1016/j.disc.2024.114377</a>.","ieee":"P. P. Cortés, P. Kumar, B. Moore, P. Ossona de Mendez, and D. A. Quiroz, “Subchromatic numbers of powers of graphs with excluded minors,” <i>Discrete Mathematics</i>, vol. 348, no. 4. Elsevier, 2025."}},{"day":"22","_id":"19010","publication":"13th International Conference on Learning Representations","file_date_updated":"2026-01-27T12:43:25Z","type":"conference","department":[{"_id":"FrLo"}],"citation":{"ista":"Yao D, Rancati D, Cadei R, Fumero M, Locatello F. 2025. Unifying causal representation learning with the invariance principle. 13th International Conference on Learning Representations. ICLR: International Conference on Learning Representations.","apa":"Yao, D., Rancati, D., Cadei, R., Fumero, M., &#38; Locatello, F. (2025). Unifying causal representation learning with the invariance principle. In <i>13th International Conference on Learning Representations</i>. Singapore: ICLR.","short":"D. Yao, D. Rancati, R. Cadei, M. Fumero, F. Locatello, in:, 13th International Conference on Learning Representations, ICLR, 2025.","mla":"Yao, Dingling, et al. “Unifying Causal Representation Learning with the Invariance Principle.” <i>13th International Conference on Learning Representations</i>, ICLR, 2025.","ama":"Yao D, Rancati D, Cadei R, Fumero M, Locatello F. Unifying causal representation learning with the invariance principle. In: <i>13th International Conference on Learning Representations</i>. ICLR; 2025.","chicago":"Yao, Dingling, Dario Rancati, Riccardo Cadei, Marco Fumero, and Francesco Locatello. “Unifying Causal Representation Learning with the Invariance Principle.” In <i>13th International Conference on Learning Representations</i>. ICLR, 2025.","ieee":"D. Yao, D. Rancati, R. Cadei, M. Fumero, and F. Locatello, “Unifying causal representation learning with the invariance principle,” in <i>13th International Conference on Learning Representations</i>, Singapore, 2025."},"oa":1,"acknowledgement":"We thank Jiaqi Zhang, Francesco Montagna, David Lopez-Paz, Kartik Ahuja, Thomas Kipf, Sara\r\nMagliacane, Julius von Kügelgen, Kun Zhang, and Bernhard Schölkopf for extremely helpful discussion. Riccardo Cadei was supported by a Google Research Scholar Award to Francesco Locatello. We acknowledge the Third Bellairs Workshop on Causal Representation Learning held at the Bellairs Research Institute, February 9/16, 2024, and a debate on the difference between interventions and counterfactuals in disentanglement and CRL that took place during Dhanya Sridhar’s lecture, which motivated us to significantly broaden the scope of the paper. We thank Dhanya and all participants of the workshop.","file":[{"content_type":"application/pdf","file_name":"4356_Unifying_Causal_Represent (1).pdf","checksum":"c4b5a4a644228c6d1b0283e1368bce9e","file_size":877014,"date_updated":"2026-01-27T12:43:25Z","success":1,"file_id":"21048","access_level":"open_access","creator":"flocatel","date_created":"2026-01-27T12:43:25Z","relation":"main_file"}],"oa_version":"Published Version","article_processing_charge":"No","OA_place":"publisher","publication_status":"published","date_published":"2025-01-22T00:00:00Z","publisher":"ICLR","date_updated":"2026-02-09T05:52:14Z","arxiv":1,"month":"01","abstract":[{"text":"Causal representation learning aims at recovering latent causal variables from high-dimensional observations to solve causal downstream tasks, such as predicting the effect of new interventions or more robust classification. A plethora of methods have been developed, each tackling carefully crafted problem settings that lead to different types of identifiability. The folklore is that these different settings are important, as they are often linked to different rungs of Pearl's causal hierarchy, although not all neatly fit. Our main contribution is to show that many existing causal representation learning approaches methodologically align the representation to known data symmetries. Identification of the variables is guided by equivalence classes across different \"data pockets\" that are not necessarily causal. This result suggests important implications, allowing us to unify many existing approaches in a single method that can mix and match different assumptions, including non-causal ones, based on the invariances relevant to our application. It also significantly benefits applicability, which we demonstrate by improving treatment effect estimation on real-world high-dimensional ecological data. Overall, this paper clarifies the role of causality assumptions in the discovery of causal variables and shifts the focus to preserving data symmetries.","lang":"eng"}],"year":"2025","scopus_import":"1","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"quality_controlled":"1","title":"Unifying causal representation learning with the invariance principle","language":[{"iso":"eng"}],"external_id":{"arxiv":["2409.02772"]},"author":[{"id":"d3e02e50-48a8-11ee-8f62-c108061797fa","last_name":"Yao","first_name":"Dingling","full_name":"Yao, Dingling"},{"last_name":"Rancati","first_name":"Dario","full_name":"Rancati, Dario","id":"feb58f2e-72ef-11ef-b75a-8f0894539cd0"},{"id":"0fa8b76f-72f0-11ef-b75a-a5da96e5ad6b","last_name":"Cadei","full_name":"Cadei, Riccardo","first_name":"Riccardo"},{"id":"1c1593eb-393f-11ef-bb8e-ab4f1e979650","last_name":"Fumero","first_name":"Marco","full_name":"Fumero, Marco"},{"first_name":"Francesco","full_name":"Locatello, Francesco","last_name":"Locatello","orcid":"0000-0002-4850-0683","id":"26cfd52f-2483-11ee-8040-88983bcc06d4"}],"status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","conference":{"start_date":"2025-04-24","name":"ICLR: International Conference on Learning Representations","end_date":"2025-04-28","location":"Singapore"},"date_created":"2025-02-05T09:23:25Z","ddc":["000"],"corr_author":"1","OA_type":"gold","has_accepted_license":"1"},{"department":[{"_id":"MaSe"}],"type":"journal_article","citation":{"ieee":"J. Vodeb <i>et al.</i>, “Stirring the false vacuum via interacting quantized bubbles on a 5,564-qubit quantum annealer,” <i>Nature Physics</i>, vol. 21. Springer Nature, pp. 386–392, 2025.","chicago":"Vodeb, Jaka, Jean-Yves Marc Desaules, Andrew Hallam, Andrea Rava, Gregor Humar, Dennis Willsch, Fengping Jin, Madita Willsch, Kristel Michielsen, and Zlatko Papić. “Stirring the False Vacuum via Interacting Quantized Bubbles on a 5,564-Qubit Quantum Annealer.” <i>Nature Physics</i>. Springer Nature, 2025. <a href=\"https://doi.org/10.1038/s41567-024-02765-w\">https://doi.org/10.1038/s41567-024-02765-w</a>.","mla":"Vodeb, Jaka, et al. “Stirring the False Vacuum via Interacting Quantized Bubbles on a 5,564-Qubit Quantum Annealer.” <i>Nature Physics</i>, vol. 21, Springer Nature, 2025, pp. 386–92, doi:<a href=\"https://doi.org/10.1038/s41567-024-02765-w\">10.1038/s41567-024-02765-w</a>.","ama":"Vodeb J, Desaules J-YM, Hallam A, et al. Stirring the false vacuum via interacting quantized bubbles on a 5,564-qubit quantum annealer. <i>Nature Physics</i>. 2025;21:386-392. doi:<a href=\"https://doi.org/10.1038/s41567-024-02765-w\">10.1038/s41567-024-02765-w</a>","short":"J. Vodeb, J.-Y.M. Desaules, A. Hallam, A. Rava, G. Humar, D. Willsch, F. Jin, M. Willsch, K. Michielsen, Z. Papić, Nature Physics 21 (2025) 386–392.","apa":"Vodeb, J., Desaules, J.-Y. M., Hallam, A., Rava, A., Humar, G., Willsch, D., … Papić, Z. (2025). Stirring the false vacuum via interacting quantized bubbles on a 5,564-qubit quantum annealer. <i>Nature Physics</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41567-024-02765-w\">https://doi.org/10.1038/s41567-024-02765-w</a>","ista":"Vodeb J, Desaules J-YM, Hallam A, Rava A, Humar G, Willsch D, Jin F, Willsch M, Michielsen K, Papić Z. 2025. Stirring the false vacuum via interacting quantized bubbles on a 5,564-qubit quantum annealer. Nature Physics. 21, 386–392."},"oa":1,"doi":"10.1038/s41567-024-02765-w","publication_identifier":{"issn":["1745-2473"],"eissn":["1745-2481"]},"acknowledgement":"J.V., D.W. and M.W. acknowledge support from the project Jülich UNified Infrastructure for Quantum computing (JUNIQ) that has received funding from the German Federal Ministry of Education and Research (BMBF) and the Ministry of Culture and Science of the State of North Rhine-Westphalia. A.R. acknowledges support from the project HPCQS (101018180) of the European High-Performance Computing Joint Undertaking (EuroHPC JU). J.-Y.D., A.H. and Z.P. acknowledge support from the Leverhulme Trust Research Leadership Award RL-2019-015 and EPSRC grant nos. EP/R513258/1 and EP/W026848/1. J.-Y.D. acknowledges support from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement no.101034413. This research was supported in part by grant no. NSF PHY-2309135 to the Kavli Institute for Theoretical Physics (KITP). Computational portions of this research work were carried out on ARC3 and ARC4, part of the high-performance computing facilities at the University of Leeds. G.H. acknowledges financial support from ARIS, P1-0040 Nonequilibrium Quantum System Dynamics. We gratefully acknowledge the Jülich Supercomputing Centre (https://www.fz-juelich.de/en/ias/jsc) for funding this project by providing computing time on the D-Wave Advantage System JUPSI through JUNIQ. We acknowledge helpful theoretical discussions with G. Lagnese and the quantum-simulation-related discussions with D-Wave’s experimental team, particularly A. MacDonald, G. Poulin-Lamarre, A. Daian and A. Berkley. We also thank V. Goliber and A. Mason for patiently organizing and mediating the corresponding meetings that enabled the discussions with D-Wave’s team. J.V., A.R., D.W., F.J., M.W. and K.M. gratefully acknowledge the Gauss Centre for Supercomputing e.V. (www.gauss-centre.eu) for funding this project by providing computing time on the GCS Supercomputer JUWELS at Jülich Supercomputing Centre (JSC).","day":"01","_id":"19012","publication":"Nature Physics","file_date_updated":"2025-08-05T11:56:53Z","date_published":"2025-03-01T00:00:00Z","publisher":"Springer Nature","arxiv":1,"date_updated":"2025-09-30T10:29:15Z","isi":1,"month":"03","scopus_import":"1","year":"2025","abstract":[{"lang":"eng","text":"False vacuum decay—the transition from a metastable quantum state to a true vacuum state—plays an important role in quantum field theory and non-equilibrium phenomena such as phase transitions and dynamical metastability. The non-perturbative nature of false vacuum decay and the limited experimental access to this process make it challenging to study, leaving several open questions regarding how true vacuum bubbles form, move and interact. Here we observe quantized bubble formation in real time, a key feature of false vacuum decay dynamics, using a quantum annealer with 5,564 superconducting flux qubits. We develop an effective model that captures both initial bubble creation and subsequent interactions, and remains accurate under dissipation. The annealer reveals coherent scaling laws in the driven many-body dynamics for more than 1,000 intrinsic qubit time units. This work provides a method for investigating false vacuum dynamics of large quantum systems in quantum annealers."}],"file":[{"checksum":"b005ccf7448fee29c187cbc9b1944893","file_name":"2025_NaturePhysics_Vodeb.pdf","content_type":"application/pdf","success":1,"date_updated":"2025-08-05T11:56:53Z","file_size":2252107,"file_id":"20127","relation":"main_file","date_created":"2025-08-05T11:56:53Z","creator":"dernst","access_level":"open_access"}],"oa_version":"Published Version","project":[{"name":"IST-BRIDGE: International postdoctoral program","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c","call_identifier":"H2020","grant_number":"101034413"}],"article_processing_charge":"Yes (via OA deal)","publication_status":"published","OA_place":"publisher","language":[{"iso":"eng"}],"author":[{"full_name":"Vodeb, Jaka","first_name":"Jaka","last_name":"Vodeb"},{"full_name":"Desaules, Jean-Yves Marc","first_name":"Jean-Yves Marc","orcid":"0000-0002-3749-6375","last_name":"Desaules","id":"6c292945-a610-11ed-9eec-c3be1ad62a80"},{"first_name":"Andrew","full_name":"Hallam, Andrew","last_name":"Hallam"},{"first_name":"Andrea","full_name":"Rava, Andrea","last_name":"Rava"},{"first_name":"Gregor","full_name":"Humar, Gregor","last_name":"Humar"},{"last_name":"Willsch","full_name":"Willsch, Dennis","first_name":"Dennis"},{"last_name":"Jin","first_name":"Fengping","full_name":"Jin, Fengping"},{"first_name":"Madita","full_name":"Willsch, Madita","last_name":"Willsch"},{"full_name":"Michielsen, Kristel","first_name":"Kristel","last_name":"Michielsen"},{"full_name":"Papić, Zlatko","first_name":"Zlatko","last_name":"Papić"}],"external_id":{"pmid":["40093970"],"isi":["001412684400001"],"arxiv":["2406.14718"]},"status":"public","intvolume":"        21","page":"386-392","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"quality_controlled":"1","title":"Stirring the false vacuum via interacting quantized bubbles on a 5,564-qubit quantum annealer","OA_type":"hybrid","has_accepted_license":"1","ec_funded":1,"volume":21,"related_material":{"link":[{"url":"https://ista.ac.at/en/news/dancing-bubbles-model-a-cosmic-disaster/","description":"News on ISTA Website","relation":"press_release"}]},"pmid":1,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","PlanS_conform":"1","date_created":"2025-02-06T10:07:13Z","ddc":["530"],"corr_author":"1","article_type":"original"},{"publication":"Environmental Science and Technology","issue":"4","day":"27","_id":"19015","acknowledgement":"F.P. and D.M.M. were funded through the Swiss National Science Foundation (grant number PCEFP2_186856).","publication_identifier":{"issn":["0013-936X"],"eissn":["1520-5851"]},"doi":"10.1021/acs.est.4c10551","type":"journal_article","citation":{"chicago":"Parrella, Francesco, Stefano Brizzolara, Markus Holzner, and Denise M. Mitrano. “Microplastics Settling in Turbid Water: Impacts of Sediments-Induced Flow Patterns on Particle Deposition Rates.” <i>Environmental Science and Technology</i>. American Chemical Society, 2025. <a href=\"https://doi.org/10.1021/acs.est.4c10551\">https://doi.org/10.1021/acs.est.4c10551</a>.","ieee":"F. Parrella, S. Brizzolara, M. Holzner, and D. M. Mitrano, “Microplastics settling in turbid water: Impacts of sediments-induced flow patterns on particle deposition rates,” <i>Environmental Science and Technology</i>, vol. 59, no. 4. American Chemical Society, pp. 2257–2265, 2025.","ista":"Parrella F, Brizzolara S, Holzner M, Mitrano DM. 2025. Microplastics settling in turbid water: Impacts of sediments-induced flow patterns on particle deposition rates. Environmental Science and Technology. 59(4), 2257–2265.","apa":"Parrella, F., Brizzolara, S., Holzner, M., &#38; Mitrano, D. M. (2025). Microplastics settling in turbid water: Impacts of sediments-induced flow patterns on particle deposition rates. <i>Environmental Science and Technology</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/acs.est.4c10551\">https://doi.org/10.1021/acs.est.4c10551</a>","ama":"Parrella F, Brizzolara S, Holzner M, Mitrano DM. Microplastics settling in turbid water: Impacts of sediments-induced flow patterns on particle deposition rates. <i>Environmental Science and Technology</i>. 2025;59(4):2257-2265. doi:<a href=\"https://doi.org/10.1021/acs.est.4c10551\">10.1021/acs.est.4c10551</a>","mla":"Parrella, Francesco, et al. “Microplastics Settling in Turbid Water: Impacts of Sediments-Induced Flow Patterns on Particle Deposition Rates.” <i>Environmental Science and Technology</i>, vol. 59, no. 4, American Chemical Society, 2025, pp. 2257–65, doi:<a href=\"https://doi.org/10.1021/acs.est.4c10551\">10.1021/acs.est.4c10551</a>.","short":"F. Parrella, S. Brizzolara, M. Holzner, D.M. Mitrano, Environmental Science and Technology 59 (2025) 2257–2265."},"department":[{"_id":"BjHo"}],"article_processing_charge":"No","publication_status":"published","oa_version":"None","month":"01","isi":1,"date_updated":"2025-09-30T10:27:26Z","abstract":[{"lang":"eng","text":"When microplastics (MPs) enter water bodies, they undergo various transport processes, including sedimentation, which can be influenced by factors such as particle size, density, and interactions with other particles. Surface waters contain suspended natural particles (e.g., clay and silt), which may impact MP settling rates. Here, we investigated how the presence of suspended sediments (SS) influenced the deposition patterns and rates of MPs in turbid waters. We systematically analyzed the settling velocities of particles, including different MP sizes and SS concentrations, in a plexiglass column with a camera array. For each experimental variant, we collected data on thousands of individual MPs, strengthening the statistical analysis of the particles’ velocities. Simultaneous measurements of the SS flow and MPs trajectories revealed that the SS induced complex flow patterns, with MPs spending more time in downwelling flow regions, thereby accelerating MPs sedimentation. This effect was more pronounced when SS were aggregated. Additionally, we found that smaller MP fragments were more affected by the fluctuations than spheres or larger fragments. Collectively, our results provide valuable data for future MP fate models and help to understand the sedimentation processes of MPs in natural waters, which is crucial for assessing their environmental transport and impact."}],"scopus_import":"1","year":"2025","publisher":"American Chemical Society","date_published":"2025-01-27T00:00:00Z","title":"Microplastics settling in turbid water: Impacts of sediments-induced flow patterns on particle deposition rates","quality_controlled":"1","page":"2257-2265","status":"public","intvolume":"        59","external_id":{"isi":["001406914100001"],"pmid":["39868426"]},"author":[{"last_name":"Parrella","first_name":"Francesco","full_name":"Parrella, Francesco"},{"last_name":"Brizzolara","full_name":"Brizzolara, Stefano","first_name":"Stefano","id":"4bbe33b8-c59a-11ee-a1af-fa33d1ac42c4"},{"last_name":"Holzner","full_name":"Holzner, Markus","first_name":"Markus"},{"last_name":"Mitrano","full_name":"Mitrano, Denise M.","first_name":"Denise M."}],"language":[{"iso":"eng"}],"date_created":"2025-02-09T23:01:50Z","article_type":"original","pmid":1,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","volume":59,"OA_type":"closed access"},{"publication":"Canadian Journal of Mathematics","_id":"19017","day":"06","doi":"10.4153/s0008414x25000021","publication_identifier":{"issn":["0008-414X"],"eissn":["1496-4279"]},"citation":{"chicago":"Glock, Stefan, Jaehoon Kim, Lyuben Lichev, Oleg Pikhurko, and Shumin Sun. “On the (k + 2, k)-Problem of Brown, Erdős, and Sós for k = 5,6,7.” <i>Canadian Journal of Mathematics</i>. Cambridge University Press, 2025. <a href=\"https://doi.org/10.4153/s0008414x25000021\">https://doi.org/10.4153/s0008414x25000021</a>.","ieee":"S. Glock, J. Kim, L. Lichev, O. Pikhurko, and S. Sun, “On the (k + 2, k)-problem of Brown, Erdős, and Sós for k = 5,6,7,” <i>Canadian Journal of Mathematics</i>. Cambridge University Press, pp. 1–43, 2025.","apa":"Glock, S., Kim, J., Lichev, L., Pikhurko, O., &#38; Sun, S. (2025). On the (k + 2, k)-problem of Brown, Erdős, and Sós for k = 5,6,7. <i>Canadian Journal of Mathematics</i>. Cambridge University Press. <a href=\"https://doi.org/10.4153/s0008414x25000021\">https://doi.org/10.4153/s0008414x25000021</a>","ista":"Glock S, Kim J, Lichev L, Pikhurko O, Sun S. 2025. On the (k + 2, k)-problem of Brown, Erdős, and Sós for k = 5,6,7. Canadian Journal of Mathematics., 1–43.","short":"S. Glock, J. Kim, L. Lichev, O. Pikhurko, S. Sun, Canadian Journal of Mathematics (2025) 1–43.","mla":"Glock, Stefan, et al. “On the (k + 2, k)-Problem of Brown, Erdős, and Sós for k = 5,6,7.” <i>Canadian Journal of Mathematics</i>, Cambridge University Press, 2025, pp. 1–43, doi:<a href=\"https://doi.org/10.4153/s0008414x25000021\">10.4153/s0008414x25000021</a>.","ama":"Glock S, Kim J, Lichev L, Pikhurko O, Sun S. On the (k + 2, k)-problem of Brown, Erdős, and Sós for k = 5,6,7. <i>Canadian Journal of Mathematics</i>. 2025:1-43. doi:<a href=\"https://doi.org/10.4153/s0008414x25000021\">10.4153/s0008414x25000021</a>"},"department":[{"_id":"MaKw"}],"type":"journal_article","oa":1,"article_processing_charge":"No","publication_status":"epub_ahead","OA_place":"publisher","oa_version":"Published Version","arxiv":1,"date_updated":"2025-09-30T10:28:07Z","isi":1,"month":"01","scopus_import":"1","year":"2025","abstract":[{"lang":"eng","text":"Let f(r)(n;s,k) denote the maximum number of edges in an n-vertex r-uniform hypergraph containing no subgraph with k edges and at most s vertices. Brown, Erdős and Sós [New directions in the theory of graphs (Proc. Third Ann Arbor Conf., Univ. Michigan 1971), pp. 53--63, Academic Press 1973] conjectured that the limit limn→∞n−2f(3)(n;k+2,k) exists for all k. The value of the limit was previously determined for k=2 in the original paper of Brown, Erdős and Sós, for k=3 by Glock [Bull. Lond. Math. Soc. 51 (2019) 230--236] and for k=4 by Glock, Joos, Kim, Kühn, Lichev and Pikhurko [arXiv:2209.14177, accepted by Proc. Amer. Math. Soc.] while Delcourt and Postle [arXiv:2210.01105, accepted by Proc. Amer. Math. Soc.] proved the conjecture (without determining the limiting value).\r\nIn this paper, we determine the value of the limit in the Brown-Erdős-Sós Problem for k∈{5,6,7}. More generally, we obtain the value of limn→∞n−2f(r)(n;rk−2k+2,k) for all r≥3 and k∈{5,6,7}. In addition, by combining these new values with recent results of Bennett, Cushman and Dudek [arXiv:2309.00182] we obtain new asymptotic values for several generalised Ramsey numbers."}],"main_file_link":[{"url":"https://doi.org/10.4153/s0008414x25000021","open_access":"1"}],"date_published":"2025-01-06T00:00:00Z","publisher":"Cambridge University Press","quality_controlled":"1","title":"On the (k + 2, k)-problem of Brown, Erdős, and Sós for k = 5,6,7","page":"1-43","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"status":"public","language":[{"iso":"eng"}],"external_id":{"arxiv":["2403.04474"],"isi":["001416788600001"]},"author":[{"full_name":"Glock, Stefan","first_name":"Stefan","last_name":"Glock"},{"last_name":"Kim","first_name":"Jaehoon","full_name":"Kim, Jaehoon"},{"id":"9aa8388e-d003-11ee-8458-c4c1d7447977","full_name":"Lichev, Lyuben","first_name":"Lyuben","last_name":"Lichev"},{"last_name":"Pikhurko","first_name":"Oleg","full_name":"Pikhurko, Oleg"},{"last_name":"Sun","full_name":"Sun, Shumin","first_name":"Shumin"}],"date_created":"2025-02-10T08:39:46Z","ddc":["500"],"article_type":"original","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","OA_type":"hybrid","has_accepted_license":"1"},{"author":[{"last_name":"Burova","first_name":"Sofiya","full_name":"Burova, Sofiya"},{"last_name":"Lichev","first_name":"Lyuben","full_name":"Lichev, Lyuben","id":"9aa8388e-d003-11ee-8458-c4c1d7447977"}],"external_id":{"arxiv":["2204.07376 "],"isi":["001420659400001"]},"language":[{"iso":"eng"}],"intvolume":"       126","status":"public","title":"The semi-random tree process","quality_controlled":"1","OA_type":"green","volume":126,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","article_number":"104120","article_type":"original","date_created":"2025-02-10T09:00:53Z","oa":1,"citation":{"mla":"Burova, Sofiya, and Lyuben Lichev. “The Semi-Random Tree Process.” <i>European Journal of Combinatorics</i>, vol. 126, 104120, Elsevier, 2025, doi:<a href=\"https://doi.org/10.1016/j.ejc.2025.104120\">10.1016/j.ejc.2025.104120</a>.","ama":"Burova S, Lichev L. The semi-random tree process. <i>European Journal of Combinatorics</i>. 2025;126. doi:<a href=\"https://doi.org/10.1016/j.ejc.2025.104120\">10.1016/j.ejc.2025.104120</a>","short":"S. Burova, L. Lichev, European Journal of Combinatorics 126 (2025).","apa":"Burova, S., &#38; Lichev, L. (2025). The semi-random tree process. <i>European Journal of Combinatorics</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.ejc.2025.104120\">https://doi.org/10.1016/j.ejc.2025.104120</a>","ista":"Burova S, Lichev L. 2025. The semi-random tree process. European Journal of Combinatorics. 126, 104120.","ieee":"S. Burova and L. Lichev, “The semi-random tree process,” <i>European Journal of Combinatorics</i>, vol. 126. Elsevier, 2025.","chicago":"Burova, Sofiya, and Lyuben Lichev. “The Semi-Random Tree Process.” <i>European Journal of Combinatorics</i>. Elsevier, 2025. <a href=\"https://doi.org/10.1016/j.ejc.2025.104120\">https://doi.org/10.1016/j.ejc.2025.104120</a>."},"type":"journal_article","department":[{"_id":"MaKw"}],"acknowledgement":"We are grateful to Dieter Mitsche for related discussions and to several anonymous referees for multiple useful comments.","publication_identifier":{"issn":["0195-6698"]},"doi":"10.1016/j.ejc.2025.104120","_id":"19018","day":"01","publication":"European Journal of Combinatorics","publisher":"Elsevier","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2204.07376"}],"date_published":"2025-05-01T00:00:00Z","abstract":[{"lang":"eng","text":"The online semi-random graph process is a one-player game which starts with the empty graph on n vertices. At every round, a player (called Builder) is presented with a vertex v chosen uniformly at random and independently from previous rounds, and constructs an edge of their choice that is incident to v. Inspired by recent advances on the semi-random graph process, we define a family of generalized online semi-random models.\r\nWe analyse a particular instance that shares similar features with the original semi-random graph process and determine the hitting times of the classical graph properties minimum degree k,k-connectivity, containment of a perfect matching, a Hamiltonian cycle and an \r\nH-factor for a fixed graph H possessing an additional tree-like property. Along the way, we derive a few consequences of the famous Aldous-Broder algorithm that may be of independent interest."}],"year":"2025","scopus_import":"1","month":"05","isi":1,"arxiv":1,"date_updated":"2025-09-30T10:28:42Z","oa_version":"Preprint","OA_place":"repository","publication_status":"published","article_processing_charge":"No"},{"publication":"Clinical Epigenetics","file_date_updated":"2025-02-17T08:44:23Z","_id":"19023","day":"25","doi":"10.1186/s13148-025-01818-y","publication_identifier":{"eissn":["1868-7083"],"issn":["1868-7075"]},"acknowledgement":"Generation Scotland: Generation Scotland received core support from the Chief Scientist Office of the Scottish Government Health Directorates (CZD/16/6) and the Scottish Funding Council (HR03006). Genotyping and DNA methylation profiling of the Generation Scotland samples were carried out by the Genetics Core Laboratory at the Edinburgh Clinical Research Facility, Edinburgh, Scotland, and were funded by the Medical Research Council UK and the Wellcome Trust (Wellcome Trust Strategic Award STratifying Resilience and Depression Longitudinally (STRADL; Reference 104036/Z/14/Z) and 220857/Z/20/Z. The DNA methylation data assayed for Generation Scotland were partially funded by a 2018 NARSAD Young Investigator Grant from the Brain & Behavior Research Foundation (Ref: 27404; awardee: Dr David M Howard) and by a JMAS SIM fellowship from the Royal College of Physicians of Edinburgh (Awardee: Dr Heather C Whalley). Lothian Birth Cohorts: We thank the LBC1921 and LBC1936 participants and team members who contributed to these studies. The LBC1921 was supported by the UK’s Biotechnology and Biological Sciences Research Council (BBSRC), The Royal Society, and The Chief Scientist Office of the Scottish Government. The LBC1936 is supported by the BBSRC, and the Economic and Social Research Council [BB/W008793/1] (which supports S.E.H.), Age UK (Disconnected Mind project), the Milton Damerel Trust, the Medical Research Council (MR/M01311/1), and the University of Edinburgh. Methylation typing of LBC1936 was supported by the Centre for Cognitive Ageing and Cognitive Epidemiology (Pilot Fund award), Age UK, The Wellcome Trust Institutional Strategic Support Fund, The University of Edinburgh, and The University of Queensland. Genotyping was funded by the BBSRC (BB/F019394/1). S.R.C. is supported by a Sir Henry Dale Fellowship jointly funded by the Wellcome Trust and the Royal Society (Grant Number 221890/Z/20/Z). ALSPAC: The UK Medical Research Council and Wellcome (Grant ref: 217065/Z/19/Z) and the University of Bristol provide core support for ALSPAC. This publication is the work of the authors and Matthew Suderman will serve as guarantors for the contents of this paper. A comprehensive list of grants funding is available on the ALSPAC website (http://www.bristol.ac.uk/alspac/external/documents/grant-acknowledgements.pdf). Funding for ALSPAC DNAm measurements was supported by the Wellcome (102215/2/13/2); the University of Bristol; the UK Economic and Social Research Council (ES/N000498/1); the UK Medical Research Council (MC_UU_12013/1, MC_UU_12013/2); and the John Templeton Foundation (60828). MS and PY work within the MRC Integrative Epidemiology Unit at the University of Bristol, which is supported by the Medical Research Council (MC_UU_00011/5). Sister Study: This research was supported by the Intramural Research Program of the National Institutes of Health (Z01-ES049033, Z01-ES049032, Z01-ES044005). A.D.C. was supported by a Medical Research Council PhD Studentship in Precision Medicine with funding from the Medical Research Council Doctoral Training Program and the University of Edinburgh College of Medicine and Veterinary Medicine. R.F.H is supported by an MRC IEU Fellowship. M.R.R. was funded by Swiss National Science Foundation Eccellenza Grant PCEGP3-181181 and by core funding from the Institute of Science and Technology Austria. E.B. and R.E.M. are supported by Alzheimer’s Society major project grant AS-PG-19b-010. This research was funded in whole, or in part, by the Wellcome Trust (104036/Z/14/Z, 220857/Z/20/Z, and 221890/Z/20/Z). For the purpose of open access, the author has applied a CC BY public copyright licence to any Author Accepted Manuscript version arising from this submission.","department":[{"_id":"MaRo"}],"citation":{"apa":"Bernabeu, E., Chybowska, A. D., Kresovich, J. K., Suderman, M., Mccartney, D. L., Hillary, R. F., … Marioni, R. E. (2025). Blood-based epigenome-wide association study and prediction of alcohol consumption. <i>Clinical Epigenetics</i>. Springer Nature. <a href=\"https://doi.org/10.1186/s13148-025-01818-y\">https://doi.org/10.1186/s13148-025-01818-y</a>","ista":"Bernabeu E, Chybowska AD, Kresovich JK, Suderman M, Mccartney DL, Hillary RF, Corley J, Valdés-Hernández MDC, Maniega SM, Bastin ME, Wardlaw JM, Xu Z, Sandler DP, Campbell A, Harris SE, Mcintosh AM, Taylor JA, Yousefi P, Cox SR, Evans KL, Robinson MR, Vallejos CA, Marioni RE. 2025. Blood-based epigenome-wide association study and prediction of alcohol consumption. Clinical Epigenetics. 17, 14.","mla":"Bernabeu, Elena, et al. “Blood-Based Epigenome-Wide Association Study and Prediction of Alcohol Consumption.” <i>Clinical Epigenetics</i>, vol. 17, 14, Springer Nature, 2025, doi:<a href=\"https://doi.org/10.1186/s13148-025-01818-y\">10.1186/s13148-025-01818-y</a>.","ama":"Bernabeu E, Chybowska AD, Kresovich JK, et al. Blood-based epigenome-wide association study and prediction of alcohol consumption. <i>Clinical Epigenetics</i>. 2025;17. doi:<a href=\"https://doi.org/10.1186/s13148-025-01818-y\">10.1186/s13148-025-01818-y</a>","short":"E. Bernabeu, A.D. Chybowska, J.K. Kresovich, M. Suderman, D.L. Mccartney, R.F. Hillary, J. Corley, M.D.C. Valdés-Hernández, S.M. Maniega, M.E. Bastin, J.M. Wardlaw, Z. Xu, D.P. Sandler, A. Campbell, S.E. Harris, A.M. Mcintosh, J.A. Taylor, P. Yousefi, S.R. Cox, K.L. Evans, M.R. Robinson, C.A. Vallejos, R.E. Marioni, Clinical Epigenetics 17 (2025).","chicago":"Bernabeu, Elena, Aleksandra D. Chybowska, Jacob K. Kresovich, Matthew Suderman, Daniel L. Mccartney, Robert F. Hillary, Janie Corley, et al. “Blood-Based Epigenome-Wide Association Study and Prediction of Alcohol Consumption.” <i>Clinical Epigenetics</i>. Springer Nature, 2025. <a href=\"https://doi.org/10.1186/s13148-025-01818-y\">https://doi.org/10.1186/s13148-025-01818-y</a>.","ieee":"E. Bernabeu <i>et al.</i>, “Blood-based epigenome-wide association study and prediction of alcohol consumption,” <i>Clinical Epigenetics</i>, vol. 17. Springer Nature, 2025."},"type":"journal_article","oa":1,"article_processing_charge":"Yes","project":[{"grant_number":"PCEGP3_181181","_id":"9B8D11D6-BA93-11EA-9121-9846C619BF3A","name":"Improving estimation and prediction of common complex disease risk"}],"publication_status":"published","OA_place":"publisher","oa_version":"Published Version","file":[{"success":1,"date_updated":"2025-02-17T08:44:23Z","file_size":1170930,"checksum":"c32511f2d09e6c164116793e784944b8","file_name":"2025_ClinicalEpigenetics_Bernabeu.pdf","content_type":"application/pdf","relation":"main_file","date_created":"2025-02-17T08:44:23Z","creator":"dernst","access_level":"open_access","file_id":"19030"}],"date_updated":"2025-09-30T10:31:08Z","isi":1,"month":"01","abstract":[{"lang":"eng","text":"Alcohol consumption is an important risk factor for multiple diseases. It is typically assessed via self-report, which is open to measurement error through recall bias. Instead, molecular data such as blood-based DNA methylation (DNAm) could be used to derive a more objective measure of alcohol consumption by incorporating information from cytosine-phosphate-guanine (CpG) sites known to be linked to the trait. Here, we explore the epigenetic architecture of self-reported weekly units of alcohol consumption in the Generation Scotland study. We first create a blood-based epigenetic score (EpiScore) of alcohol consumption using elastic net penalized linear regression. We explore the effect of pre-filtering for CpG features ahead of elastic net, as well as differential patterns by sex and by units consumed in the last week relative to an average week. The final EpiScore was trained on 16,717 individuals and tested in four external cohorts: the Lothian Birth Cohorts (LBC) of 1921 and 1936, the Sister Study, and the Avon Longitudinal Study of Parents and Children (total N across studies > 10,000). The maximum Pearson correlation between the EpiScore and self-reported alcohol consumption within cohort ranged from 0.41 to 0.53. In LBC1936, higher EpiScore levels had significant associations with poorer global brain imaging metrics, whereas self-reported alcohol consumption did not. Finally, we identified two novel CpG loci via a Bayesian penalized regression epigenome-wide association study of alcohol consumption. Together, these findings show how DNAm can objectively characterize patterns of alcohol consumption that associate with brain health, unlike self-reported estimates."}],"scopus_import":"1","year":"2025","date_published":"2025-01-25T00:00:00Z","publisher":"Springer Nature","quality_controlled":"1","title":"Blood-based epigenome-wide association study and prediction of alcohol consumption","DOAJ_listed":"1","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"status":"public","intvolume":"        17","language":[{"iso":"eng"}],"external_id":{"isi":["001406495600001"],"pmid":["39863868"]},"author":[{"last_name":"Bernabeu","full_name":"Bernabeu, Elena","first_name":"Elena"},{"first_name":"Aleksandra D.","full_name":"Chybowska, Aleksandra D.","last_name":"Chybowska"},{"first_name":"Jacob K.","full_name":"Kresovich, Jacob K.","last_name":"Kresovich"},{"full_name":"Suderman, Matthew","first_name":"Matthew","last_name":"Suderman"},{"full_name":"Mccartney, Daniel L.","first_name":"Daniel L.","last_name":"Mccartney"},{"last_name":"Hillary","full_name":"Hillary, Robert F.","first_name":"Robert F."},{"last_name":"Corley","full_name":"Corley, Janie","first_name":"Janie"},{"last_name":"Valdés-Hernández","first_name":"Maria Del C.","full_name":"Valdés-Hernández, Maria Del C."},{"last_name":"Maniega","full_name":"Maniega, Susana Muñoz","first_name":"Susana Muñoz"},{"last_name":"Bastin","full_name":"Bastin, Mark E.","first_name":"Mark E."},{"first_name":"Joanna M.","full_name":"Wardlaw, Joanna M.","last_name":"Wardlaw"},{"last_name":"Xu","first_name":"Zongli","full_name":"Xu, Zongli"},{"last_name":"Sandler","full_name":"Sandler, Dale P.","first_name":"Dale P."},{"full_name":"Campbell, Archie","first_name":"Archie","last_name":"Campbell"},{"first_name":"Sarah E.","full_name":"Harris, Sarah E.","last_name":"Harris"},{"last_name":"Mcintosh","first_name":"Andrew M.","full_name":"Mcintosh, Andrew M."},{"last_name":"Taylor","first_name":"Jack A.","full_name":"Taylor, Jack A."},{"full_name":"Yousefi, Paul","first_name":"Paul","last_name":"Yousefi"},{"first_name":"Simon R.","full_name":"Cox, Simon R.","last_name":"Cox"},{"first_name":"Kathryn L.","full_name":"Evans, Kathryn L.","last_name":"Evans"},{"id":"E5D42276-F5DA-11E9-8E24-6303E6697425","last_name":"Robinson","orcid":"0000-0001-8982-8813","full_name":"Robinson, Matthew Richard","first_name":"Matthew Richard"},{"first_name":"Catalina A.","full_name":"Vallejos, Catalina A.","last_name":"Vallejos"},{"full_name":"Marioni, Riccardo E.","first_name":"Riccardo E.","last_name":"Marioni"}],"date_created":"2025-02-16T23:02:33Z","ddc":["570"],"article_type":"original","pmid":1,"article_number":"14","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","volume":17,"OA_type":"gold","has_accepted_license":"1"},{"month":"05","isi":1,"arxiv":1,"date_updated":"2025-09-30T10:31:45Z","scopus_import":"1","abstract":[{"lang":"eng","text":"Aqueous two-phase systems (ATPSs), phase-separating solutions of water soluble but mutually immiscible molecular species, offer fascinating prospects for selective partitioning, purification, and extraction. Here, we formulate a general Brownian dynamics based coarse-grained simulation model for an ATPS of two water soluble but mutually immiscible polymer species. Including additional solute species into the model is straightforward, which enables capturing the assembly and partitioning response of, e.g., nanoparticles (NPs), additional macromolecular species, or impurities in the ATPS. We demonstrate that the simulation model captures satisfactorily the phase separation, partitioning, and interfacial properties of an actual ATPS using a model ATPS in which a polymer mixture of dextran and polyethylene glycol (PEG) phase separates, and magnetic NPs selectively partition into one of the two polymeric phases. Phase separation and NP partitioning are characterized both via the computational model and experimentally, under different conditions. The simulation model captures the trends observed in the experimental system and quantitatively links the partitioning behavior to the component species interactions. Finally, the simulation model reveals that the ATPS interface fluctuations in systems with magnetic NPs as a partitioned species can be controlled by the magnetic field at length scales much smaller than those probed experimentally to date."}],"year":"2025","publisher":"Elsevier","date_published":"2025-05-15T00:00:00Z","article_processing_charge":"Yes (in subscription journal)","OA_place":"publisher","publication_status":"published","oa_version":"Published Version","file":[{"file_id":"20128","creator":"dernst","access_level":"open_access","relation":"main_file","date_created":"2025-08-05T12:07:24Z","content_type":"application/pdf","checksum":"a52b72a243a717d85c348f53898ad934","file_name":"2025_JourColloidScie_Scacchi.pdf","file_size":4212615,"date_updated":"2025-08-05T12:07:24Z","success":1}],"acknowledgement":"This work was supported by the Swiss National Science Foundation under the project no. P500PT_206916 (A.S.) and the Academy of Finland through its Centres of Excellence Programs (2022-2029, LIBER) under projects no. 346111 and 364205 (M.S.) and 346112 and 364206 (J.T.). MPH was supported by the National Science Foundation through the Princeton University (PCCM) Materials Research Science and Engineering Center DMR-2011750. A.S. warmly thanks Bob Evans for extensive scientific discussions and for his hospitality during the research visit in Bristol. Computational resources by CSC IT Centre for Finland, the Aalto Science-IT project, and RAMI – RawMatters Finland Infrastructure are also gratefully acknowledged.","publication_identifier":{"issn":["0021-9797"],"eissn":["1095-7103"],"issnl":["0021-9797"]},"doi":"10.1016/j.jcis.2025.01.256","department":[{"_id":"RaKl"}],"type":"journal_article","citation":{"ama":"Scacchi A, Rigoni C, Haataja M, Timonen JVI, Sammalkorpi M. A coarse-grained model for aqueous two-phase systems: Application to ferrofluids. <i>Journal of Colloid and Interface Science</i>. 2025;686:1135-1146. doi:<a href=\"https://doi.org/10.1016/j.jcis.2025.01.256\">10.1016/j.jcis.2025.01.256</a>","mla":"Scacchi, Alberto, et al. “A Coarse-Grained Model for Aqueous Two-Phase Systems: Application to Ferrofluids.” <i>Journal of Colloid and Interface Science</i>, vol. 686, Elsevier, 2025, pp. 1135–46, doi:<a href=\"https://doi.org/10.1016/j.jcis.2025.01.256\">10.1016/j.jcis.2025.01.256</a>.","short":"A. Scacchi, C. Rigoni, M. Haataja, J.V.I. Timonen, M. Sammalkorpi, Journal of Colloid and Interface Science 686 (2025) 1135–1146.","apa":"Scacchi, A., Rigoni, C., Haataja, M., Timonen, J. V. I., &#38; Sammalkorpi, M. (2025). A coarse-grained model for aqueous two-phase systems: Application to ferrofluids. <i>Journal of Colloid and Interface Science</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.jcis.2025.01.256\">https://doi.org/10.1016/j.jcis.2025.01.256</a>","ista":"Scacchi A, Rigoni C, Haataja M, Timonen JVI, Sammalkorpi M. 2025. A coarse-grained model for aqueous two-phase systems: Application to ferrofluids. Journal of Colloid and Interface Science. 686, 1135–1146.","ieee":"A. Scacchi, C. Rigoni, M. Haataja, J. V. I. Timonen, and M. Sammalkorpi, “A coarse-grained model for aqueous two-phase systems: Application to ferrofluids,” <i>Journal of Colloid and Interface Science</i>, vol. 686. Elsevier, pp. 1135–1146, 2025.","chicago":"Scacchi, Alberto, Carlo Rigoni, Mikko Haataja, Jaakko V.I. Timonen, and Maria Sammalkorpi. “A Coarse-Grained Model for Aqueous Two-Phase Systems: Application to Ferrofluids.” <i>Journal of Colloid and Interface Science</i>. Elsevier, 2025. <a href=\"https://doi.org/10.1016/j.jcis.2025.01.256\">https://doi.org/10.1016/j.jcis.2025.01.256</a>."},"oa":1,"publication":"Journal of Colloid and Interface Science","file_date_updated":"2025-08-05T12:07:24Z","_id":"19024","day":"15","related_material":{"record":[{"id":"19033","status":"public","relation":"research_data"}]},"volume":686,"OA_type":"hybrid","has_accepted_license":"1","ddc":["540"],"date_created":"2025-02-16T23:02:33Z","article_type":"original","pmid":1,"PlanS_conform":"1","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","status":"public","intvolume":"       686","author":[{"first_name":"Alberto","full_name":"Scacchi, Alberto","last_name":"Scacchi"},{"id":"c5df3b62-5f9e-11ef-ba3c-b97f5b5b5ef0","last_name":"Rigoni","first_name":"Carlo","full_name":"Rigoni, Carlo"},{"full_name":"Haataja, Mikko","first_name":"Mikko","last_name":"Haataja"},{"full_name":"Timonen, Jaakko V.I.","first_name":"Jaakko V.I.","last_name":"Timonen"},{"full_name":"Sammalkorpi, Maria","first_name":"Maria","last_name":"Sammalkorpi"}],"external_id":{"isi":["001426125300001"],"arxiv":["2311.16906"],"pmid":["39933351"]},"language":[{"iso":"eng"}],"title":"A coarse-grained model for aqueous two-phase systems: Application to ferrofluids","quality_controlled":"1","page":"1135-1146","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"}},{"abstract":[{"lang":"eng","text":"A complete understanding of the central stars of planetary nebulae (CSPNe) remains elusive. Over the past several decades, time-series photometry of CSPNe has yielded significant results including, but not limited to, discoveries of nearly 100 binary systems, insights into pulsations and winds in young white dwarfs, and studies of stars undergoing very late thermal pulses. We have undertaken a systematic study of optical photometric variability of cataloged CSPNe, using the light curves from the Zwicky Transient Facility (ZTF). By applying appropriate variability metrics, we arrive at a list of 94 highly variable CSPN candidates. Based on the timescales of the light-curve activity, we classify the variables broadly into short- and long-timescale variables. In this first paper in this series, we focus on the former, which is the majority class comprising 83 objects. We report periods for six sources for the first time, and recover several known periodic variables. Among the aperiodic sources, most exhibit a jitter around a median flux with a stable amplitude, and a few show outbursts. We draw attention to WeSb 1, which shows a different kind of variability: prominent deep and aperiodic dips, resembling transits from a dust/debris disk. We find strong evidence for a binary nature of WeSb 1 (possibly an F-type subgiant companion). The compactness of the emission lines and inferred high electron densities make WeSb 1 a candidate for either an EGB 6-type planetary nucleus, or a symbiotic system inside an evolved planetary nebula, both of which are rare objects. To demonstrate further promise with ZTF, we report three additional newly identified periodic sources that do not appear in the list of highly variable sources. Finally, we also introduce a two-dimensional metric space defined by the von Neumann statistics and Pearson Skew and demonstrate its effectiveness in identifying unique variables of astrophysical interest, like WeSb 1."}],"scopus_import":"1","year":"2025","arxiv":1,"date_updated":"2025-09-30T10:32:17Z","isi":1,"month":"02","date_published":"2025-02-01T00:00:00Z","publisher":"IOP Publishing","publication_status":"published","OA_place":"publisher","article_processing_charge":"No","file":[{"relation":"main_file","date_created":"2025-02-17T09:13:41Z","creator":"dernst","access_level":"open_access","file_id":"19034","date_updated":"2025-02-17T09:13:41Z","success":1,"file_size":3657568,"checksum":"42b942ee1bf32ed225024e168174be92","file_name":"2025_PASP_Bhattacharjee.pdf","content_type":"application/pdf"}],"oa_version":"Published Version","doi":"10.1088/1538-3873/ada702","publication_identifier":{"issn":["0004-6280"],"issnl":["0004-6280"]},"acknowledgement":"This work is based on observations obtained with the Samuel Oschin Telescope 48 inch and the 60 inch Telescope at the Palomar Observatory as part of the Zwicky Transient Facility project. ZTF is supported by the National Science Foundation under grants No. AST-1440341 and AST-2034437 and a collaboration including current partners Caltech, IPAC, the Oskar Klein Center at Stockholm University, the University of Maryland, University of California, Berkeley, the University of Wisconsin at Milwaukee, University of Warwick, Ruhr University Bochum, Cornell University, Northwestern University, and Drexel University. Operations are conducted by COO, IPAC, and UW.\r\n\r\nThis work has made use of data from the European Space Agency (ESA) mission Gaia (https://www.cosmos.esa.int/gaia), processed by the Gaia Data Processing and Analysis Consortium (DPAC; https://www.cosmos.esa.int/web/gaia/dpac/consortium). Funding for the DPAC has been provided by national institutions, in particular, the institutions participating in the Gaia Multilateral Agreement.\r\n\r\nWe are grateful to the staffs of Palomar Observatory and the Hobby-Eberly Telescope for assistance with the observations and data management. The Liverpool Telescope is operated on the island of La Palma by Liverpool John Moores University in the Spanish Observatorio del Roque de los Muchachos of the Instituto de Astrofisica de Canarias with financial support from the UK Science and Technology Facilities Council.\r\n\r\nThe Low-Resolution Spectrograph 2 (LRS2) on HET was developed and funded by the University of Texas at Austin McDonald Observatory and Department of Astronomy, and by Pennsylvania State University. We thank the Leibniz-Institut für Astrophysik Potsdam (AIP) and the Institut für Astrophysik Göttingen (IAG) for their contributions to the construction of the integral field units. We acknowledge the Texas Advanced Computing Center (TACC) at The University of Texas at Austin for providing high performance computing, visualization, and storage resources that have contributed to the results reported within this paper.\r\n\r\nWe thank the anonymous referee for the detailed comments, which improved the clarity of the manuscript significantly. We also thank Gunter Cibis for pointing out typographical errors in the names of a few PNe in the first draft. S.B. expresses gratitude to Kishalay De for providing the Gattini-IR and WISE data. S.B. thanks Frank J. Masci and Zachary P. Vanderbosch for useful discussions and suggestions regarding solving the issues with ZTF forced photometry on extended sources. S.B. also thanks Jim Fuller, Charles C. Steidel, Lynne Hillenbrand, and Adolfo Carvalho for useful discussions on methods and science. S.B. also thanks David O. Cook for providing access to his CLU image cutout service to generate the WeSb 1 image. S.B. acknowledges the financial support from the Wallace L. W. Sargent Graduate Fellowship during the first year of his graduate studies at Caltech. N.C. was supported through the Cancer Research UK grant A24042. S.B. thanks Martina Veresvarka for drawing our attention to the TESS light curves of WeSb 1.\r\n\r\nWe have used Python packages Numpy (Harris et al. 2020), SciPy (Virtanen et al. 2020), Matplotlib (Hunter 2007), Pandas (pandas development team 2020), Astropy (Astropy Collaboration et al. 2013, 2018), and Astroquery (Ginsburg et al. 2019) at various stages of this research.","oa":1,"citation":{"ieee":"S. Bhattacharjee <i>et al.</i>, “Variability of central stars of planetary nebulae with the zwicky transient facility. I. Methods, short-timescale variables, and the unusual nucleus of WeSb 1,” <i>Publications of the Astronomical Society of the Pacific</i>, vol. 137, no. 2. IOP Publishing, 2025.","chicago":"Bhattacharjee, Soumyadeep, S. R. Kulkarni, Albert K.H. Kong, M. S. Tam, Howard E. Bond, Kareem El-Badry, Ilaria Caiazzo, et al. “Variability of Central Stars of Planetary Nebulae with the Zwicky Transient Facility. I. Methods, Short-Timescale Variables, and the Unusual Nucleus of WeSb 1.” <i>Publications of the Astronomical Society of the Pacific</i>. IOP Publishing, 2025. <a href=\"https://doi.org/10.1088/1538-3873/ada702\">https://doi.org/10.1088/1538-3873/ada702</a>.","short":"S. Bhattacharjee, S.R. Kulkarni, A.K.H. Kong, M.S. Tam, H.E. Bond, K. El-Badry, I. Caiazzo, N. Chornay, M.J. Graham, A.C. Rodriguez, G.R. Zeimann, C. Fremling, A.J. Drake, K. Werner, H. Rodriguez, T.A. Prince, R.R. Laher, T.X. Chen, R. Riddle, Publications of the Astronomical Society of the Pacific 137 (2025).","ama":"Bhattacharjee S, Kulkarni SR, Kong AKH, et al. Variability of central stars of planetary nebulae with the zwicky transient facility. I. Methods, short-timescale variables, and the unusual nucleus of WeSb 1. <i>Publications of the Astronomical Society of the Pacific</i>. 2025;137(2). doi:<a href=\"https://doi.org/10.1088/1538-3873/ada702\">10.1088/1538-3873/ada702</a>","mla":"Bhattacharjee, Soumyadeep, et al. “Variability of Central Stars of Planetary Nebulae with the Zwicky Transient Facility. I. Methods, Short-Timescale Variables, and the Unusual Nucleus of WeSb 1.” <i>Publications of the Astronomical Society of the Pacific</i>, vol. 137, no. 2, 024201, IOP Publishing, 2025, doi:<a href=\"https://doi.org/10.1088/1538-3873/ada702\">10.1088/1538-3873/ada702</a>.","ista":"Bhattacharjee S, Kulkarni SR, Kong AKH, Tam MS, Bond HE, El-Badry K, Caiazzo I, Chornay N, Graham MJ, Rodriguez AC, Zeimann GR, Fremling C, Drake AJ, Werner K, Rodriguez H, Prince TA, Laher RR, Chen TX, Riddle R. 2025. Variability of central stars of planetary nebulae with the zwicky transient facility. I. Methods, short-timescale variables, and the unusual nucleus of WeSb 1. Publications of the Astronomical Society of the Pacific. 137(2), 024201.","apa":"Bhattacharjee, S., Kulkarni, S. R., Kong, A. K. H., Tam, M. S., Bond, H. E., El-Badry, K., … Riddle, R. (2025). Variability of central stars of planetary nebulae with the zwicky transient facility. I. Methods, short-timescale variables, and the unusual nucleus of WeSb 1. <i>Publications of the Astronomical Society of the Pacific</i>. IOP Publishing. <a href=\"https://doi.org/10.1088/1538-3873/ada702\">https://doi.org/10.1088/1538-3873/ada702</a>"},"type":"journal_article","department":[{"_id":"IlCa"}],"file_date_updated":"2025-02-17T09:13:41Z","issue":"2","publication":"Publications of the Astronomical Society of the Pacific","_id":"19025","day":"01","volume":137,"related_material":{"link":[{"relation":"erratum","url":"https://doi.org/10.1088/1538-3873/adbcd8"}]},"has_accepted_license":"1","article_type":"original","date_created":"2025-02-16T23:02:33Z","ddc":["520"],"article_number":"024201","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","intvolume":"       137","status":"public","language":[{"iso":"eng"}],"external_id":{"isi":["001416903300001"],"arxiv":["2410.03589"]},"author":[{"first_name":"Soumyadeep","full_name":"Bhattacharjee, Soumyadeep","last_name":"Bhattacharjee"},{"first_name":"S. R.","full_name":"Kulkarni, S. R.","last_name":"Kulkarni"},{"full_name":"Kong, Albert K.H.","first_name":"Albert K.H.","last_name":"Kong"},{"last_name":"Tam","first_name":"M. S.","full_name":"Tam, M. S."},{"last_name":"Bond","first_name":"Howard E.","full_name":"Bond, Howard E."},{"last_name":"El-Badry","full_name":"El-Badry, Kareem","first_name":"Kareem"},{"id":"8ae5b6e7-2a03-11ee-914d-b58ed7a3b47d","first_name":"Ilaria","full_name":"Caiazzo, Ilaria","orcid":"0000-0002-4770-5388","last_name":"Caiazzo"},{"last_name":"Chornay","first_name":"Nicholas","full_name":"Chornay, Nicholas"},{"last_name":"Graham","full_name":"Graham, Matthew J.","first_name":"Matthew J."},{"full_name":"Rodriguez, Antonio C.","first_name":"Antonio C.","last_name":"Rodriguez"},{"last_name":"Zeimann","full_name":"Zeimann, Gregory R.","first_name":"Gregory R."},{"first_name":"Christoffer","full_name":"Fremling, Christoffer","last_name":"Fremling"},{"full_name":"Drake, Andrew J.","first_name":"Andrew J.","last_name":"Drake"},{"last_name":"Werner","full_name":"Werner, Klaus","first_name":"Klaus"},{"first_name":"Hector","full_name":"Rodriguez, Hector","last_name":"Rodriguez"},{"last_name":"Prince","first_name":"Thomas A.","full_name":"Prince, Thomas A."},{"first_name":"Russ R.","full_name":"Laher, Russ R.","last_name":"Laher"},{"full_name":"Chen, Tracy X.","first_name":"Tracy X.","last_name":"Chen"},{"first_name":"Reed","full_name":"Riddle, Reed","last_name":"Riddle"}],"license":"https://creativecommons.org/licenses/by/3.0/","quality_controlled":"1","title":"Variability of central stars of planetary nebulae with the zwicky transient facility. I. Methods, short-timescale variables, and the unusual nucleus of WeSb 1","tmp":{"name":"Creative Commons Attribution 3.0 Unported (CC BY 3.0)","short":"CC BY (3.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/3.0/legalcode"}},{"related_material":{"record":[{"relation":"earlier_version","status":"public","id":"18143"}]},"volume":25,"OA_type":"green","date_created":"2025-02-16T23:02:34Z","article_type":"original","corr_author":"1","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","status":"public","intvolume":"        25","author":[{"first_name":"Denise","full_name":"Puglia, Denise","last_name":"Puglia","orcid":"0000-0003-1144-2763","id":"4D495994-AE37-11E9-AC72-31CAE5697425"},{"id":"9a7a5123-8972-11ed-ae7b-dd1f2af457bd","full_name":"Odessey, Rachel H","first_name":"Rachel H","last_name":"Odessey"},{"full_name":"Burns, Peter","first_name":"Peter","last_name":"Burns"},{"last_name":"Luhmann","full_name":"Luhmann, Niklas","first_name":"Niklas"},{"last_name":"Schmid","first_name":"Silvan","full_name":"Schmid, Silvan"},{"last_name":"Higginbotham","orcid":"0000-0003-2607-2363","first_name":"Andrew P","full_name":"Higginbotham, Andrew P","id":"4AD6785A-F248-11E8-B48F-1D18A9856A87"}],"external_id":{"isi":["001415246000001"],"arxiv":["2407.15314"]},"language":[{"iso":"eng"}],"title":"Room temperature, cavity-free capacitive strong coupling to mechanical motion","quality_controlled":"1","page":"2749-2755","isi":1,"month":"02","arxiv":1,"date_updated":"2025-09-30T10:29:58Z","abstract":[{"text":"The back-action damping of mechanical motion by electromagnetic radiation is typically overwhelmed by internal loss channels unless demanding experimental ingredients such as superconducting resonators, high-quality optical cavities, or large magnetic fields are employed. Here we demonstrate the first room temperature, cavity-free, all-electric device where back-action damping exceeds internal loss, enabled by a mechanically compliant parallel-plate capacitor with a nanoscale plate separation and an aspect ratio exceeding 1,000. The device has 4 orders of magnitude lower insertion loss than a comparable commercial quartz crystal and achieves a position imprecision rivaling optical interferometers. With the help of a back-action isolation scheme, we observe radiative cooling of mechanical motion by a remote cryogenic load. This work provides a technologically accessible route to high-precision sensing, transduction, and signal processing.","lang":"eng"}],"year":"2025","scopus_import":"1","publisher":"American Chemical Society","main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2407.15314","open_access":"1"}],"date_published":"2025-02-06T00:00:00Z","article_processing_charge":"No","project":[{"grant_number":"P33692","name":"Cavity electromechanics across a quantum phase transition","_id":"0aa3608a-070f-11eb-9043-e9cd8a2bd931"},{"name":"Surface Charge and Tunneling Multi-Mode Imaging","_id":"62843413-2b32-11ec-9570-c4ec6eabfae7","grant_number":"26088"}],"OA_place":"repository","publication_status":"published","oa_version":"Preprint","publication_identifier":{"issn":["1530-6984"],"eissn":["1530-6992"]},"acknowledgement":"We thank Carissa Kumar and Vibha Padmanabhan for assistance in comparing performance with devices across the literature. We thank Andrew Cleland for helpful comments on this work. We are grateful for support from the Miba Machine Shop and Nanofabrication facility at IST Austria. This work was supported by the Austrian FWF grant P33692–N and includes a recipient of a DOC Fellowship of the Austrian Academy of Sciences (DOC – No. 26088) at the Institute of Science and Technology, Austria.","doi":"10.1021/acs.nanolett.4c05796","citation":{"chicago":"Puglia, Denise, Rachel H Odessey, Peter Burns, Niklas Luhmann, Silvan Schmid, and Andrew P Higginbotham. “Room Temperature, Cavity-Free Capacitive Strong Coupling to Mechanical Motion.” <i>Nano Letters</i>. American Chemical Society, 2025. <a href=\"https://doi.org/10.1021/acs.nanolett.4c05796\">https://doi.org/10.1021/acs.nanolett.4c05796</a>.","ieee":"D. Puglia, R. H. Odessey, P. Burns, N. Luhmann, S. Schmid, and A. P. Higginbotham, “Room temperature, cavity-free capacitive strong coupling to mechanical motion,” <i>Nano Letters</i>, vol. 25, no. 7. American Chemical Society, pp. 2749–2755, 2025.","apa":"Puglia, D., Odessey, R. H., Burns, P., Luhmann, N., Schmid, S., &#38; Higginbotham, A. P. (2025). Room temperature, cavity-free capacitive strong coupling to mechanical motion. <i>Nano Letters</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/acs.nanolett.4c05796\">https://doi.org/10.1021/acs.nanolett.4c05796</a>","ista":"Puglia D, Odessey RH, Burns P, Luhmann N, Schmid S, Higginbotham AP. 2025. Room temperature, cavity-free capacitive strong coupling to mechanical motion. Nano Letters. 25(7), 2749–2755.","ama":"Puglia D, Odessey RH, Burns P, Luhmann N, Schmid S, Higginbotham AP. Room temperature, cavity-free capacitive strong coupling to mechanical motion. <i>Nano Letters</i>. 2025;25(7):2749-2755. doi:<a href=\"https://doi.org/10.1021/acs.nanolett.4c05796\">10.1021/acs.nanolett.4c05796</a>","mla":"Puglia, Denise, et al. “Room Temperature, Cavity-Free Capacitive Strong Coupling to Mechanical Motion.” <i>Nano Letters</i>, vol. 25, no. 7, American Chemical Society, 2025, pp. 2749–55, doi:<a href=\"https://doi.org/10.1021/acs.nanolett.4c05796\">10.1021/acs.nanolett.4c05796</a>.","short":"D. Puglia, R.H. Odessey, P. Burns, N. Luhmann, S. Schmid, A.P. Higginbotham, Nano Letters 25 (2025) 2749–2755."},"type":"journal_article","department":[{"_id":"AnHi"}],"oa":1,"publication":"Nano Letters","issue":"7","acknowledged_ssus":[{"_id":"M-Shop"},{"_id":"NanoFab"}],"_id":"19026","day":"06"},{"OA_place":"publisher","publication_status":"published","project":[{"_id":"fc31cba2-9c52-11eb-aca3-ff467d239cd2","name":"Taming Complexity in Partial Differential Systems","grant_number":"F6504"}],"article_processing_charge":"Yes (in subscription journal)","oa_version":"Published Version","file":[{"content_type":"application/pdf","checksum":"53505647e848ed50f7e0d00c369b14e7","file_name":"2025_SIAMNumerAnaly_Cornalba.pdf","file_size":2435019,"success":1,"date_updated":"2025-02-17T08:32:23Z","file_id":"19029","creator":"dernst","access_level":"open_access","relation":"main_file","date_created":"2025-02-17T08:32:23Z"}],"abstract":[{"lang":"eng","text":"Stochastic PDEs of fluctuating hydrodynamics are a powerful tool for the description of fluctuations in many-particle systems. In this paper, we develop and analyze a multilevel Monte Carlo (MLMC) scheme for the Dean–Kawasaki equation, a pivotal representative of this class of SPDEs. We prove analytically and demonstrate numerically that our MLMC scheme provides a significant reduction in computational cost (with respect to a standard Monte Carlo method) in the simulation of the Dean–Kawasaki equation. Specifically, we link this reduction in cost to having a sufficiently large average particle density and show that sizeable cost reductions can be obtained even when we have solutions with regions of low density. Numerical simulations are provided in the two-dimensional case, confirming our theoretical predictions. Our results are formulated entirely in terms of the law of distributions rather than in terms of strong spatial norms: this crucially allows for MLMC speed-ups altogether despite the Dean–Kawasaki equation being highly singular."}],"year":"2025","scopus_import":"1","isi":1,"month":"02","arxiv":1,"date_updated":"2025-09-30T10:30:31Z","publisher":"Society for Industrial and Applied Mathematics","date_published":"2025-02-01T00:00:00Z","issue":"1","file_date_updated":"2025-02-17T08:32:23Z","publication":"SIAM Journal on Numerical Analysis","_id":"19027","day":"01","publication_identifier":{"eissn":["1095-7170"],"issn":["0036-1429"]},"acknowledgement":"The work of the authors was supported by the Austrian Science Fund (FWF) projectF65.","doi":"10.1137/23M1617345","oa":1,"department":[{"_id":"JuFi"}],"citation":{"apa":"Cornalba, F., &#38; Fischer, J. L. (2025). Multilevel Monte Carlo methods for the Dean–Kawasaki equation from fluctuating hydrodynamics. <i>SIAM Journal on Numerical Analysis</i>. Society for Industrial and Applied Mathematics. <a href=\"https://doi.org/10.1137/23M1617345\">https://doi.org/10.1137/23M1617345</a>","ista":"Cornalba F, Fischer JL. 2025. Multilevel Monte Carlo methods for the Dean–Kawasaki equation from fluctuating hydrodynamics. SIAM Journal on Numerical Analysis. 63(1), 262–287.","ama":"Cornalba F, Fischer JL. Multilevel Monte Carlo methods for the Dean–Kawasaki equation from fluctuating hydrodynamics. <i>SIAM Journal on Numerical Analysis</i>. 2025;63(1):262-287. doi:<a href=\"https://doi.org/10.1137/23M1617345\">10.1137/23M1617345</a>","mla":"Cornalba, Federico, and Julian L. Fischer. “Multilevel Monte Carlo Methods for the Dean–Kawasaki Equation from Fluctuating Hydrodynamics.” <i>SIAM Journal on Numerical Analysis</i>, vol. 63, no. 1, Society for Industrial and Applied Mathematics, 2025, pp. 262–87, doi:<a href=\"https://doi.org/10.1137/23M1617345\">10.1137/23M1617345</a>.","short":"F. Cornalba, J.L. Fischer, SIAM Journal on Numerical Analysis 63 (2025) 262–287.","chicago":"Cornalba, Federico, and Julian L Fischer. “Multilevel Monte Carlo Methods for the Dean–Kawasaki Equation from Fluctuating Hydrodynamics.” <i>SIAM Journal on Numerical Analysis</i>. Society for Industrial and Applied Mathematics, 2025. <a href=\"https://doi.org/10.1137/23M1617345\">https://doi.org/10.1137/23M1617345</a>.","ieee":"F. Cornalba and J. L. Fischer, “Multilevel Monte Carlo methods for the Dean–Kawasaki equation from fluctuating hydrodynamics,” <i>SIAM Journal on Numerical Analysis</i>, vol. 63, no. 1. Society for Industrial and Applied Mathematics, pp. 262–287, 2025."},"type":"journal_article","article_type":"original","corr_author":"1","ddc":["510"],"date_created":"2025-02-16T23:02:34Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","volume":63,"has_accepted_license":"1","OA_type":"hybrid","title":"Multilevel Monte Carlo methods for the Dean–Kawasaki equation from fluctuating hydrodynamics","quality_controlled":"1","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"page":"262-287","intvolume":"        63","status":"public","external_id":{"isi":["001447583400011"],"arxiv":["2311.08872"]},"author":[{"id":"2CEB641C-A400-11E9-A717-D712E6697425","full_name":"Cornalba, Federico","first_name":"Federico","last_name":"Cornalba","orcid":"0000-0002-6269-5149"},{"id":"2C12A0B0-F248-11E8-B48F-1D18A9856A87","full_name":"Fischer, Julian L","first_name":"Julian L","last_name":"Fischer","orcid":"0000-0002-0479-558X"}],"language":[{"iso":"eng"}]},{"type":"research_data_reference","citation":{"ista":"Scacchi A. 2025. 2025_SCACCHI_JCIS, Fairdata, <a href=\"https://doi.org/10.23729/4fb80194-cdb2-4f49-94f4-f8a87b8e29c1\">10.23729/4fb80194-cdb2-4f49-94f4-f8a87b8e29c1</a>.","apa":"Scacchi, A. (2025). 2025_SCACCHI_JCIS. Fairdata. <a href=\"https://doi.org/10.23729/4fb80194-cdb2-4f49-94f4-f8a87b8e29c1\">https://doi.org/10.23729/4fb80194-cdb2-4f49-94f4-f8a87b8e29c1</a>","ama":"Scacchi A. 2025_SCACCHI_JCIS. 2025. doi:<a href=\"https://doi.org/10.23729/4fb80194-cdb2-4f49-94f4-f8a87b8e29c1\">10.23729/4fb80194-cdb2-4f49-94f4-f8a87b8e29c1</a>","mla":"Scacchi, Alberto. <i>2025_SCACCHI_JCIS</i>. Fairdata, 2025, doi:<a href=\"https://doi.org/10.23729/4fb80194-cdb2-4f49-94f4-f8a87b8e29c1\">10.23729/4fb80194-cdb2-4f49-94f4-f8a87b8e29c1</a>.","short":"A. Scacchi, (2025).","chicago":"Scacchi, Alberto. “2025_SCACCHI_JCIS.” Fairdata, 2025. <a href=\"https://doi.org/10.23729/4fb80194-cdb2-4f49-94f4-f8a87b8e29c1\">https://doi.org/10.23729/4fb80194-cdb2-4f49-94f4-f8a87b8e29c1</a>.","ieee":"A. Scacchi, “2025_SCACCHI_JCIS.” Fairdata, 2025."},"department":[{"_id":"RaKl"}],"oa":1,"author":[{"last_name":"Scacchi","full_name":"Scacchi, Alberto","first_name":"Alberto"}],"status":"public","doi":"10.23729/4fb80194-cdb2-4f49-94f4-f8a87b8e29c1","acknowledgement":"This work was supported by the Swiss National Science Foundation under the project no. P500PT_206916 (A.S.) and the Academy of Finland through its Centres of Excellence Programs (2022-2029, LIBER) under projects no. 346111 and 364205 (M.S.) and 346112 and 364206 (J.T.). MPH was supported by the National Science Foundation through the Princeton University (PCCM) Materials Research Science and Engineering Center DMR-2011750. A.S. warmly thanks Bob Evans for extensive scientific discussions and for his hospitality during the research visit in Bristol. Computational resources by CSC IT Centre for Finland, the Aalto Science-IT project, and RAMI -- RawMatters Finland Infrastructure are also gratefully acknowledged.","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"_id":"19033","day":"05","title":"2025_SCACCHI_JCIS","main_file_link":[{"url":"https://doi.org/10.23729/4fb80194-cdb2-4f49-94f4-f8a87b8e29c1","open_access":"1"}],"date_published":"2025-02-05T00:00:00Z","has_accepted_license":"1","publisher":"Fairdata","date_updated":"2025-09-30T10:31:44Z","month":"02","related_material":{"record":[{"id":"19024","status":"public","relation":"used_in_publication"}]},"year":"2025","abstract":[{"text":"This data set contains the simulation input files, scripts, and figures data belonging to the publication\r\n\r\nAlberto Scacchi, Carlo Rigoni, Mikko P. Haataja, Jakko V. I. Timonen, and Maria Sammalkorpi, \"A Coarse-grained Model for Aqueous Two-phase Systems: Application to Ferrofluids\", Journal of Colloids and Interface Science (2025). https://doi.org/10.1016/j.jcis.2025.01.256.","lang":"eng"}],"contributor":[{"id":"c5df3b62-5f9e-11ef-ba3c-b97f5b5b5ef0","last_name":"Rigoni","first_name":"Carlo"},{"last_name":"Sammalkorpi","first_name":"Maria"},{"first_name":"Mikko","last_name":"Haataja"},{"first_name":"Jaakoo","last_name":"Timonen"}],"oa_version":"Published Version","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_processing_charge":"No","date_created":"2025-02-17T09:00:36Z","ddc":["530"],"OA_place":"publisher"},{"quality_controlled":"1","title":"Unsupervised extraction of rotational Lagrangian coherent structures","status":"public","intvolume":"       290","language":[{"iso":"eng"}],"external_id":{"isi":["001423607400001"]},"author":[{"last_name":"Neamtu-Halic","full_name":"Neamtu-Halic, Marius M.","first_name":"Marius M."},{"id":"4bbe33b8-c59a-11ee-a1af-fa33d1ac42c4","first_name":"Stefano","full_name":"Brizzolara, Stefano","last_name":"Brizzolara"},{"last_name":"Haller","first_name":"George","full_name":"Haller, George"},{"full_name":"Holzner, Markus","first_name":"Markus","last_name":"Holzner"}],"date_created":"2025-02-17T09:18:41Z","article_type":"original","article_number":"106558","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","volume":290,"related_material":{"link":[{"relation":"software","url":"https://github.com/NeamtuMarius/Unsupervised-3D-LAVD-Extraction-Algorithm"}]},"OA_type":"closed access","publication":"Computers & Fluids","day":"01","_id":"19035","doi":"10.1016/j.compfluid.2025.106558","publication_identifier":{"issn":["0045-7930"]},"acknowledgement":"M.M.N.H. and M.H. acknowledge financial support from SNSF grant number 200727. M.H. and S.B. acknowledge financial support from the DFG priority program SPP 1881 Turbulent Superstructures under Grant No. HO5519/1-2.","department":[{"_id":"BjHo"}],"citation":{"apa":"Neamtu-Halic, M. M., Brizzolara, S., Haller, G., &#38; Holzner, M. (2025). Unsupervised extraction of rotational Lagrangian coherent structures. <i>Computers &#38; Fluids</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.compfluid.2025.106558\">https://doi.org/10.1016/j.compfluid.2025.106558</a>","ista":"Neamtu-Halic MM, Brizzolara S, Haller G, Holzner M. 2025. Unsupervised extraction of rotational Lagrangian coherent structures. Computers &#38; Fluids. 290, 106558.","short":"M.M. Neamtu-Halic, S. Brizzolara, G. Haller, M. Holzner, Computers &#38; Fluids 290 (2025).","ama":"Neamtu-Halic MM, Brizzolara S, Haller G, Holzner M. Unsupervised extraction of rotational Lagrangian coherent structures. <i>Computers &#38; Fluids</i>. 2025;290. doi:<a href=\"https://doi.org/10.1016/j.compfluid.2025.106558\">10.1016/j.compfluid.2025.106558</a>","mla":"Neamtu-Halic, Marius M., et al. “Unsupervised Extraction of Rotational Lagrangian Coherent Structures.” <i>Computers &#38; Fluids</i>, vol. 290, 106558, Elsevier, 2025, doi:<a href=\"https://doi.org/10.1016/j.compfluid.2025.106558\">10.1016/j.compfluid.2025.106558</a>.","chicago":"Neamtu-Halic, Marius M., Stefano Brizzolara, George Haller, and Markus Holzner. “Unsupervised Extraction of Rotational Lagrangian Coherent Structures.” <i>Computers &#38; Fluids</i>. Elsevier, 2025. <a href=\"https://doi.org/10.1016/j.compfluid.2025.106558\">https://doi.org/10.1016/j.compfluid.2025.106558</a>.","ieee":"M. M. Neamtu-Halic, S. Brizzolara, G. Haller, and M. Holzner, “Unsupervised extraction of rotational Lagrangian coherent structures,” <i>Computers &#38; Fluids</i>, vol. 290. Elsevier, 2025."},"type":"journal_article","article_processing_charge":"No","publication_status":"published","oa_version":"None","date_updated":"2025-09-30T10:34:32Z","month":"03","isi":1,"scopus_import":"1","year":"2025","abstract":[{"text":"Lagrangian coherent structures (LCSs) are widely recognized as playing a significant role in turbulence dynamics since they can control the transport of mass, momentum or heat. However, the methods used to identify these structures are often based on ambiguous definitions and arbitrary thresholding. While LCSs theory provides precise and frame-indifferent mathematical definitions of coherent structures, some of the commonly used extraction algorithms employed in the literature are still case-specific and involve user-defined parameters. In this study, we present a new, unsupervised extraction algorithm that enables the extraction of rotational LCSs based on Lagrangian average vorticity deviation from an arbitrary 3D velocity field. The algorithm utilizes two alternative methods for the identification of the LCS core (ridge): an unsupervised clustering method and a streamline-based method. In a subsequent step, the ridge curve is parametrized through a pruning procedure of minimum spanning tree graphs. To assess the effectiveness of the algorithm, we test it on two cases: (i) direct numerical simulations of forced homogeneous and isotropic turbulence and (ii) three-dimensional Particle Tracking Velocimetry experiments of a turbulent gravity current.","lang":"eng"}],"date_published":"2025-03-01T00:00:00Z","publisher":"Elsevier"},{"language":[{"iso":"eng"}],"external_id":{"isi":["001422380500004"],"pmid":["39841147"]},"author":[{"last_name":"Naumann","first_name":"Laura B","full_name":"Naumann, Laura B","id":"81a3b706-8972-11ed-ae7b-8eff728700ca"},{"first_name":"Loreen","full_name":"Hertäg, Loreen","last_name":"Hertäg"},{"full_name":"Müller, Jennifer","first_name":"Jennifer","last_name":"Müller"},{"first_name":"Johannes J.","full_name":"Letzkus, Johannes J.","last_name":"Letzkus"},{"first_name":"Henning","full_name":"Sprekeler, Henning","last_name":"Sprekeler"}],"status":"public","intvolume":"       122","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","image":"/images/cc_by_nc_nd.png","short":"CC BY-NC-ND (4.0)","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)"},"quality_controlled":"1","title":"Layer-specific control of inhibition by NDNF interneurons","license":"https://creativecommons.org/licenses/by-nc-nd/4.0/","OA_type":"hybrid","has_accepted_license":"1","volume":122,"related_material":{"link":[{"relation":"software","url":"https://github.com/LNaumann/NDNF_control_inhibition_Naumann25"}]},"pmid":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_number":"e2408966122","date_created":"2025-02-17T09:20:19Z","ddc":["570"],"article_type":"original","citation":{"ista":"Naumann LB, Hertäg L, Müller J, Letzkus JJ, Sprekeler H. 2025. Layer-specific control of inhibition by NDNF interneurons. Proceedings of the National Academy of Sciences. 122(4), e2408966122.","apa":"Naumann, L. B., Hertäg, L., Müller, J., Letzkus, J. J., &#38; Sprekeler, H. (2025). Layer-specific control of inhibition by NDNF interneurons. <i>Proceedings of the National Academy of Sciences</i>. National Academy of Sciences. <a href=\"https://doi.org/10.1073/pnas.2408966122\">https://doi.org/10.1073/pnas.2408966122</a>","mla":"Naumann, Laura B., et al. “Layer-Specific Control of Inhibition by NDNF Interneurons.” <i>Proceedings of the National Academy of Sciences</i>, vol. 122, no. 4, e2408966122, National Academy of Sciences, 2025, doi:<a href=\"https://doi.org/10.1073/pnas.2408966122\">10.1073/pnas.2408966122</a>.","ama":"Naumann LB, Hertäg L, Müller J, Letzkus JJ, Sprekeler H. Layer-specific control of inhibition by NDNF interneurons. <i>Proceedings of the National Academy of Sciences</i>. 2025;122(4). doi:<a href=\"https://doi.org/10.1073/pnas.2408966122\">10.1073/pnas.2408966122</a>","short":"L.B. Naumann, L. Hertäg, J. Müller, J.J. Letzkus, H. Sprekeler, Proceedings of the National Academy of Sciences 122 (2025).","chicago":"Naumann, Laura B, Loreen Hertäg, Jennifer Müller, Johannes J. Letzkus, and Henning Sprekeler. “Layer-Specific Control of Inhibition by NDNF Interneurons.” <i>Proceedings of the National Academy of Sciences</i>. National Academy of Sciences, 2025. <a href=\"https://doi.org/10.1073/pnas.2408966122\">https://doi.org/10.1073/pnas.2408966122</a>.","ieee":"L. B. Naumann, L. Hertäg, J. Müller, J. J. Letzkus, and H. Sprekeler, “Layer-specific control of inhibition by NDNF interneurons,” <i>Proceedings of the National Academy of Sciences</i>, vol. 122, no. 4. National Academy of Sciences, 2025."},"department":[{"_id":"TiVo"}],"type":"journal_article","oa":1,"doi":"10.1073/pnas.2408966122","acknowledgement":"We thank all members of the Letzkus lab, the Sprekeler lab, and the Vogels lab for discussions, U. Thirimanna for technical assistance, and K. Deisseroth for generously sharing reagents. This work was supported by the German Research Foundation (LE 3804/3-1, LE 3804/4-1, LE 3804/7-1, CRC-TRR 384/1 2024, - 514483642, and 460088091) and the Wellcome Trust Senior Research Fellowship 214316/Z/18/Z.\r\nElectrophysiological recordings, source code for simulations, and data analysis have been deposited in GitHub (https://github.com/LNaumann/NDNF_control_inhibition_Naumann25) (62).","publication_identifier":{"eissn":["1091-6490"],"issn":["0027-8424"]},"day":"22","_id":"19036","publication":"Proceedings of the National Academy of Sciences","file_date_updated":"2025-02-17T14:46:18Z","issue":"4","date_published":"2025-01-22T00:00:00Z","publisher":"National Academy of Sciences","date_updated":"2026-02-16T12:28:02Z","month":"01","isi":1,"scopus_import":"1","abstract":[{"lang":"eng","text":"Neuronal processing of external sensory input is shaped by internally generated top–down information. In the neocortex, top–down projections primarily target layer 1, which contains NDNF (neuron-derived neurotrophic factor)-expressing interneurons and the dendrites of pyramidal cells. Here, we investigate the hypothesis that NDNF interneurons shape cortical computations in an unconventional, layer-specific way, by exerting presynaptic inhibition on synapses in layer 1 while leaving synapses in deeper layers unaffected. We first confirm experimentally that in the auditory cortex, synapses from somatostatin-expressing (SOM) onto NDNF neurons are indeed modulated by ambient Gamma-aminobutyric acid (GABA). Shifting to a computational model, we then show that this mechanism introduces a distinct mutual inhibition motif between NDNF interneurons and the synaptic outputs of SOM interneurons. This motif can control inhibition in a layer-specific way and introduces competition between NDNF and SOM interneurons for dendritic inhibition onto pyramidal cells on different timescales. NDNF interneurons can thereby control cortical information flow by redistributing dendritic inhibition from fast to slow timescales and by gating different sources of dendritic inhibition."}],"year":"2025","file":[{"creator":"dernst","access_level":"open_access","relation":"main_file","date_created":"2025-02-17T14:46:18Z","file_id":"19046","file_size":13726531,"success":1,"date_updated":"2025-02-17T14:46:18Z","content_type":"application/pdf","checksum":"636d5130724e3236ebf4fc658b3945fe","file_name":"2025_PNAS_Naumann.pdf"}],"oa_version":"Published Version","article_processing_charge":"Yes (in subscription journal)","publication_status":"published","OA_place":"publisher"},{"publisher":"IEEE","date_published":"2025-04-01T00:00:00Z","year":"2025","abstract":[{"text":"We present a novel, portable sensor platform that enables concurrent monitoring of surface mass and charge density variations at thin biointerfaces. This platform combines a coplanar-gated field-effect transistor (FET) architecture with grating-coupled surface plasmon resonance (SPR), yielding an integrated disposable sensor chip prepared by nanoimprint and maskless photolithography techniques. The sensor chip design is suitable for scalable production and relies on reduced graphene oxide (rGO), serving as the FET’s semiconductor material for the electronic readout, and a metallic gate electrode surface that is corrugated with a multi-diffractive structure for optical probing with resonantly excited surface plasmons. Together with its integration in a compact instrumentation this results in a form factor optimized solution for dual-mode investigations without compromising the optical or electronic sensor performance. A poly-L-lysine (PLL) – based thin linker layer was deployed at the sensor surface to covalently attach azide-conjugated biomolecules by using incorporated “clickable” dibenzocyclooctyne (DBCO) moieties. Interestingly, the dual-mode measurements allow elucidating the role of the globular nature of the PLL chains when increasing the density of DBCO attached to their backbone, leading to PLL folding and internalization of DBCO moieties, and thus reducing the coupling yield for the used DNA oligomers. We envision that this platform can be employed to studying a range of other biointerface architectures and biomolecular interaction phenomena, which are inherently tied to mass and charge density variations.","lang":"eng"}],"scopus_import":"1","isi":1,"month":"04","date_updated":"2026-02-16T11:50:01Z","oa_version":"Published Version","file":[{"checksum":"9cdd4017025a3add6198ed84798319e8","file_name":"2025_IEEESensor_Hasler.pdf","content_type":"application/pdf","date_updated":"2025-12-30T07:59:13Z","success":1,"file_size":2214584,"file_id":"20887","relation":"main_file","date_created":"2025-12-30T07:59:13Z","creator":"dernst","access_level":"open_access"}],"OA_place":"publisher","publication_status":"published","article_processing_charge":"Yes (in subscription journal)","oa":1,"department":[{"_id":"MaIb"}],"type":"journal_article","citation":{"chicago":"Hasler, Roger, Pietro A. Livio, Anil Bozdogan, Stefan Fossati, Simone Hageneder, Verónica Montes-García, Jacopo Movilli, et al. “Dual Electronic and Optical Monitoring of Biointerfaces by a Grating-Structured Coplanar-Gated Field-Effect Transistor.” <i>IEEE Sensors Journal</i>. IEEE, 2025. <a href=\"https://doi.org/10.1109/jsen.2025.3533113\">https://doi.org/10.1109/jsen.2025.3533113</a>.","ieee":"R. Hasler <i>et al.</i>, “Dual electronic and optical monitoring of biointerfaces by a grating-structured coplanar-gated field-effect transistor,” <i>IEEE Sensors Journal</i>, vol. 25, no. 7. IEEE, pp. 10521–10529, 2025.","ista":"Hasler R, Livio PA, Bozdogan A, Fossati S, Hageneder S, Montes-García V, Movilli J, Moazzenzade T, Loohuis L, Reiner-Rozman C, Tamayo A, Fiedler C, Ibáñez M, Kleber C, Huskens J, Dostalek J, Samorì P, Knoll W. 2025. Dual electronic and optical monitoring of biointerfaces by a grating-structured coplanar-gated field-effect transistor. IEEE Sensors Journal. 25(7), 10521–10529.","apa":"Hasler, R., Livio, P. A., Bozdogan, A., Fossati, S., Hageneder, S., Montes-García, V., … Knoll, W. (2025). Dual electronic and optical monitoring of biointerfaces by a grating-structured coplanar-gated field-effect transistor. <i>IEEE Sensors Journal</i>. IEEE. <a href=\"https://doi.org/10.1109/jsen.2025.3533113\">https://doi.org/10.1109/jsen.2025.3533113</a>","short":"R. Hasler, P.A. Livio, A. Bozdogan, S. Fossati, S. Hageneder, V. Montes-García, J. Movilli, T. Moazzenzade, L. Loohuis, C. Reiner-Rozman, A. Tamayo, C. Fiedler, M. Ibáñez, C. Kleber, J. Huskens, J. Dostalek, P. Samorì, W. Knoll, IEEE Sensors Journal 25 (2025) 10521–10529.","mla":"Hasler, Roger, et al. “Dual Electronic and Optical Monitoring of Biointerfaces by a Grating-Structured Coplanar-Gated Field-Effect Transistor.” <i>IEEE Sensors Journal</i>, vol. 25, no. 7, IEEE, 2025, pp. 10521–29, doi:<a href=\"https://doi.org/10.1109/jsen.2025.3533113\">10.1109/jsen.2025.3533113</a>.","ama":"Hasler R, Livio PA, Bozdogan A, et al. Dual electronic and optical monitoring of biointerfaces by a grating-structured coplanar-gated field-effect transistor. <i>IEEE Sensors Journal</i>. 2025;25(7):10521-10529. doi:<a href=\"https://doi.org/10.1109/jsen.2025.3533113\">10.1109/jsen.2025.3533113</a>"},"publication_identifier":{"issn":["1530-437X"],"eissn":["1558-1748"]},"acknowledgement":"We thank the Electron Microscopy Facility at ISTA for their support with sputter coating the FO probes and NOSI GmbH for their support with 3D printing.","doi":"10.1109/jsen.2025.3533113","day":"01","_id":"19037","issue":"7","acknowledged_ssus":[{"_id":"EM-Fac"}],"file_date_updated":"2025-12-30T07:59:13Z","publication":"IEEE Sensors Journal","has_accepted_license":"1","OA_type":"hybrid","volume":25,"PlanS_conform":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_type":"original","ddc":["540"],"date_created":"2025-02-17T09:22:26Z","external_id":{"isi":["001457747000001"]},"author":[{"last_name":"Hasler","first_name":"Roger","full_name":"Hasler, Roger"},{"first_name":"Pietro A.","full_name":"Livio, Pietro A.","last_name":"Livio"},{"last_name":"Bozdogan","full_name":"Bozdogan, Anil","first_name":"Anil"},{"last_name":"Fossati","full_name":"Fossati, Stefan","first_name":"Stefan"},{"first_name":"Simone","full_name":"Hageneder, Simone","last_name":"Hageneder"},{"full_name":"Montes-García, Verónica","first_name":"Verónica","last_name":"Montes-García"},{"first_name":"Jacopo","full_name":"Movilli, Jacopo","last_name":"Movilli"},{"last_name":"Moazzenzade","full_name":"Moazzenzade, Taghi","first_name":"Taghi"},{"last_name":"Loohuis","first_name":"Luna","full_name":"Loohuis, Luna"},{"last_name":"Reiner-Rozman","first_name":"Ciril","full_name":"Reiner-Rozman, Ciril"},{"last_name":"Tamayo","full_name":"Tamayo, Adrián","first_name":"Adrián"},{"id":"bd3fceba-dc74-11ea-a0a7-c17f71817366","last_name":"Fiedler","first_name":"Christine","full_name":"Fiedler, Christine"},{"id":"43C61214-F248-11E8-B48F-1D18A9856A87","full_name":"Ibáñez, Maria","first_name":"Maria","last_name":"Ibáñez","orcid":"0000-0001-5013-2843"},{"last_name":"Kleber","first_name":"Christoph","full_name":"Kleber, Christoph"},{"full_name":"Huskens, Jurriaan","first_name":"Jurriaan","last_name":"Huskens"},{"first_name":"Jakub","full_name":"Dostalek, Jakub","last_name":"Dostalek"},{"full_name":"Samorì, Paolo","first_name":"Paolo","last_name":"Samorì"},{"last_name":"Knoll","full_name":"Knoll, Wolfgang","first_name":"Wolfgang"}],"language":[{"iso":"eng"}],"intvolume":"        25","status":"public","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"page":"10521-10529","title":"Dual electronic and optical monitoring of biointerfaces by a grating-structured coplanar-gated field-effect transistor","quality_controlled":"1"},{"intvolume":"         5","status":"public","language":[{"iso":"eng"}],"author":[{"last_name":"Henzinger","orcid":"0000-0002-5008-6530","first_name":"Monika H","full_name":"Henzinger, Monika H","id":"540c9bbd-f2de-11ec-812d-d04a5be85630"},{"last_name":"Upadhyay","full_name":"Upadhyay, Jalaj","first_name":"Jalaj"}],"external_id":{"arxiv":["2412.02840"]},"quality_controlled":"1","title":"Improved differentially private continual observation using group algebra","page":"2951 - 2970","volume":5,"ec_funded":1,"OA_type":"green","date_created":"2025-02-17T09:31:03Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","conference":{"start_date":"2025-01-12","end_date":"2025-01-15","name":"SODA: Symposium on Discrete Algorithms","location":"New Orleans, LA, United States"},"doi":"10.1137/1.9781611978322.95","publication_identifier":{"isbn":["979-833131200-8"],"issn":["1071-9040"]},"acknowledgement":"Monika Henzinger: This project has received funding from the European Research Council(ERC) under the European Union’s Horizon 2020 research and innovation programme (Grantagreement No. 101019564) and the Austrian Science Fund (FWF) grant DOI 10.55776/Z422,grant DOI 10.55776/I5982, and grant DOI 10.55776/P33775 with additional funding from the netidee SCIENCEStiftung, 2020–2024.Jalaj Upadhyay’s research was funded by the Rutgers Decanal Grant no. 302918 and an unrestricted giftfrom Google. This work was done in part while visiting the Institute of Science and Technology Austria (ISTA).The authors would like to thank Sarvagya Upadhyay for the initial discussion and feedback on the early draft of the paper. The authors would like to thank the anonymous reviewers, Brendan McMahan and Abhradeep Thakurta for the discussions that helped improve the presentation of the final version of the paper.","oa":1,"department":[{"_id":"MoHe"}],"citation":{"chicago":"Henzinger, Monika, and Jalaj Upadhyay. “Improved Differentially Private Continual Observation Using Group Algebra.” In <i>Proceedings of the 2025 Annual ACM-SIAM Symposium on Discrete Algorithms</i>, 5:2951–70. Association for Computing Machinery, 2025. <a href=\"https://doi.org/10.1137/1.9781611978322.95\">https://doi.org/10.1137/1.9781611978322.95</a>.","ieee":"M. Henzinger and J. Upadhyay, “Improved differentially private continual observation using group algebra,” in <i>Proceedings of the 2025 Annual ACM-SIAM Symposium on Discrete Algorithms</i>, New Orleans, LA, United States, 2025, vol. 5, pp. 2951–2970.","apa":"Henzinger, M., &#38; Upadhyay, J. (2025). Improved differentially private continual observation using group algebra. In <i>Proceedings of the 2025 Annual ACM-SIAM Symposium on Discrete Algorithms</i> (Vol. 5, pp. 2951–2970). New Orleans, LA, United States: Association for Computing Machinery. <a href=\"https://doi.org/10.1137/1.9781611978322.95\">https://doi.org/10.1137/1.9781611978322.95</a>","ista":"Henzinger M, Upadhyay J. 2025. Improved differentially private continual observation using group algebra. Proceedings of the 2025 Annual ACM-SIAM Symposium on Discrete Algorithms. SODA: Symposium on Discrete Algorithms vol. 5, 2951–2970.","ama":"Henzinger M, Upadhyay J. Improved differentially private continual observation using group algebra. In: <i>Proceedings of the 2025 Annual ACM-SIAM Symposium on Discrete Algorithms</i>. Vol 5. Association for Computing Machinery; 2025:2951-2970. doi:<a href=\"https://doi.org/10.1137/1.9781611978322.95\">10.1137/1.9781611978322.95</a>","mla":"Henzinger, Monika, and Jalaj Upadhyay. “Improved Differentially Private Continual Observation Using Group Algebra.” <i>Proceedings of the 2025 Annual ACM-SIAM Symposium on Discrete Algorithms</i>, vol. 5, Association for Computing Machinery, 2025, pp. 2951–70, doi:<a href=\"https://doi.org/10.1137/1.9781611978322.95\">10.1137/1.9781611978322.95</a>.","short":"M. Henzinger, J. Upadhyay, in:, Proceedings of the 2025 Annual ACM-SIAM Symposium on Discrete Algorithms, Association for Computing Machinery, 2025, pp. 2951–2970."},"type":"conference","publication":"Proceedings of the 2025 Annual ACM-SIAM Symposium on Discrete Algorithms","_id":"19038","day":"20","year":"2025","abstract":[{"lang":"eng","text":"Differentially private weighted prefix sum under continual observation is a crucial component in the production-level deployment of private next-word prediction for Gboard, which, according to Google, has over a billion users. More specifically, Google uses a differentially private mechanism to sum weighted gradients in its private follow-the-regularized leader algorithm. Apart from efficiency, the additive error of the private mechanism is crucial as multiplied with the square root of the model’s dimension d (with d ranging up to 10 trillion, for example, Switch Transformers or M6-10T), it determines the accuracy of the learning system. So, any improvement in leading constant matters significantly in practice. In this paper, we show a novel connection between mechanisms for continual weighted prefix sum and a concept in representation theory known as the group matrix introduced in correspondence between Dedekind and Frobenius (Sitzungsber. Preuss. Akad. Wiss. Berlin, 1897) and generalized by Schur (Journal für die reine und angewandte Mathematik, 1904). To the best of our knowledge, this is the first application of group algebra in the analysis of differentially private algorithms. Using this connection, we analyze a class of matrix norms known as factorization norms that give upper and lower bounds for the additive error under general ℓp-norms of the matrix mechanism. This allows us to give 1. the first efficient factorization that matches the best-known non-constructive upper bound on the factorization norm by Mathias (SIAM Journal of Matrix Analysis and Applications, 1993) for the matrix used in Google’s deployment, and also improves on the previous best-known constructive bound of Fichtenberger, Henzinger, and Upadhyay (ICML 2023) and Henzinger, Upadhyay, and Upadhyay (SODA 2023); thereby, partially resolving an open question in operator theory, 2. the first upper bound on the additive error for a large class of weight functions for weighted prefix sum problems, including the sliding window matrix (Bolot, Fawaz, Muthukrishnan, Nikolov, and Taft (ICDT 2013). We also improve the bound on factorizing the striped matrix used for outputting a synthetic graph that approximates all cuts (Fichtenberger, Henzinger, and Upadhyay (ICML 2023)); 3. a general improved upper bound on the factorization norms that depend on algebraic properties of the weighted sum matrices and that applies to a more general class of weighting functions than the ones considered in Henzinger, Upadhyay, and Upadhyay (SODA 2024). Using the known connection between these factorization norms and the ℓp-error of continual weighted sum, we give an upper bound on the ℓp-error for the continual weighted sum problem for p ≥ 2."}],"scopus_import":"1","date_updated":"2025-04-14T13:50:49Z","arxiv":1,"month":"01","date_published":"2025-01-20T00:00:00Z","main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2412.02840","open_access":"1"}],"publisher":"Association for Computing Machinery","OA_place":"repository","publication_status":"published","article_processing_charge":"No","project":[{"_id":"bd9ca328-d553-11ed-ba76-dc4f890cfe62","name":"The design and evaluation of modern fully dynamic data structures","grant_number":"101019564","call_identifier":"H2020"},{"name":"Efficient algorithms","_id":"34def286-11ca-11ed-8bc3-da5948e1613c","grant_number":"Z00422"},{"grant_number":"I05982","_id":"bda196b2-d553-11ed-ba76-8e8ee6c21103","name":"Static and Dynamic Hierarchical Graph Decompositions"},{"name":"Fast Algorithms for a Reactive Network Layer","_id":"bd9e3a2e-d553-11ed-ba76-8aa684ce17fe","grant_number":"P33775"}],"oa_version":"Preprint"},{"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","date_created":"2025-02-17T09:32:16Z","article_type":"original","corr_author":"1","OA_type":"green","ec_funded":1,"volume":53,"page":"239 - 298","title":"Tracy-Widom limit for free sum of random matrices","quality_controlled":"1","external_id":{"arxiv":["2110.05147"],"isi":["001407834700007"]},"author":[{"id":"dd216c0a-c1f9-11eb-beaf-e9ea9d2de76d","last_name":"Ji","full_name":"Ji, Hong Chang","first_name":"Hong Chang"},{"last_name":"Park","full_name":"Park, Jaewhi","first_name":"Jaewhi"}],"language":[{"iso":"eng"}],"status":"public","intvolume":"        53","oa_version":"Preprint","project":[{"name":"Random matrices beyond Wigner-Dyson-Mehta","_id":"62796744-2b32-11ec-9570-940b20777f1d","grant_number":"101020331","call_identifier":"H2020"}],"article_processing_charge":"No","OA_place":"repository","publication_status":"published","publisher":"Institute of Mathematical Statistics","main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2110.05147","open_access":"1"}],"date_published":"2025-01-19T00:00:00Z","isi":1,"month":"01","date_updated":"2025-09-30T10:32:51Z","arxiv":1,"year":"2025","scopus_import":"1","abstract":[{"text":"We consider fluctuations of the largest eigenvalues of the random matrix model A + UBU∗ where A and B are N × N deterministic Hermitian (or symmetric) matrices and U is a Haar-distributed unitary (or orthogonal) matrix. We prove that the largest eigenvalue weakly converges to the GUE (or GOE) Tracy–Widom distribution, under mild assumptions on A and B to\r\nguarantee that the density of states of the model decays as square root around\r\nthe upper edge. Our proof is based on the comparison of the Green function\r\nalong the Dyson Brownian motion starting from the matrix A + UBU∗ and\r\nending at time N−1/3+o(1). As a byproduct of our proof, we also prove an\r\noptimal local law for the Dyson Brownian motion up to the constant time\r\nscale.","lang":"eng"}],"day":"19","_id":"19039","publication":"The Annals of Probability","issue":"1","department":[{"_id":"LaEr"}],"type":"journal_article","citation":{"apa":"Ji, H. C., &#38; Park, J. (2025). Tracy-Widom limit for free sum of random matrices. <i>The Annals of Probability</i>. Institute of Mathematical Statistics. <a href=\"https://doi.org/10.1214/24-aop1705\">https://doi.org/10.1214/24-aop1705</a>","ista":"Ji HC, Park J. 2025. Tracy-Widom limit for free sum of random matrices. The Annals of Probability. 53(1), 239–298.","short":"H.C. Ji, J. Park, The Annals of Probability 53 (2025) 239–298.","mla":"Ji, Hong Chang, and Jaewhi Park. “Tracy-Widom Limit for Free Sum of Random Matrices.” <i>The Annals of Probability</i>, vol. 53, no. 1, Institute of Mathematical Statistics, 2025, pp. 239–98, doi:<a href=\"https://doi.org/10.1214/24-aop1705\">10.1214/24-aop1705</a>.","ama":"Ji HC, Park J. Tracy-Widom limit for free sum of random matrices. <i>The Annals of Probability</i>. 2025;53(1):239-298. doi:<a href=\"https://doi.org/10.1214/24-aop1705\">10.1214/24-aop1705</a>","chicago":"Ji, Hong Chang, and Jaewhi Park. “Tracy-Widom Limit for Free Sum of Random Matrices.” <i>The Annals of Probability</i>. Institute of Mathematical Statistics, 2025. <a href=\"https://doi.org/10.1214/24-aop1705\">https://doi.org/10.1214/24-aop1705</a>.","ieee":"H. C. Ji and J. Park, “Tracy-Widom limit for free sum of random matrices,” <i>The Annals of Probability</i>, vol. 53, no. 1. Institute of Mathematical Statistics, pp. 239–298, 2025."},"oa":1,"acknowledgement":"The work of H.C. Ji was partially supported by ERC Advanced Grant “RMTBeyond” No. 101020331. The work of J. Park was partially supported by National Research Foundation of Korea under grant number NRF-2019R1A5A1028324. The authors would like to thank Ji Oon Lee for helpful discussions.","publication_identifier":{"issn":["0091-1798"]},"doi":"10.1214/24-aop1705"},{"file":[{"file_size":2034433,"success":1,"date_updated":"2026-02-17T13:17:00Z","content_type":"application/pdf","checksum":"56299f55682528a7cd0136497ce8b383","file_name":"2025_AlgebraNumberTheory_Faisant.pdf","creator":"dernst","access_level":"open_access","relation":"main_file","date_created":"2026-02-17T13:17:00Z","file_id":"21307"}],"oa_version":"Published Version","publication_status":"published","OA_place":"publisher","article_processing_charge":"No","project":[{"name":"IST-BRIDGE: International postdoctoral program","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c","grant_number":"101034413","call_identifier":"H2020"}],"publisher":"Mathematical Sciences Publishers","date_published":"2025-04-22T00:00:00Z","abstract":[{"lang":"eng","text":"This work concerns asymptotical stabilisation phenomena occurring in the moduli space of sections of certain algebraic families over a smooth projective curve, whenever the generic fibre of the family is a smooth projective Fano variety, or not far from being Fano.\r\n We describe the expected behaviour of the class, in a ring of motivic integration, of the moduli space of sections of given numerical class. Up to an adequate normalisation, it should converge, when the class of the sections goes arbitrarily far from the boundary of the dual of the effective cone, to an effective element given by a motivic Euler product. Such a principle can be seen as an analogue for rational curves of the Batyrev-Manin-Peyre principle for rational points.\r\n The central tool of this article is the property of equidistribution of curves. We show that this notion does not depend on the choice of a model of the generic fibre, and that equidistribution of curves holds for smooth projective split toric varieties. As an application, we study the Batyrev-Manin-Peyre principle for curves on a certain kind of twisted products."}],"year":"2025","month":"04","arxiv":1,"date_updated":"2026-02-17T13:19:19Z","_id":"19054","day":"22","file_date_updated":"2026-02-17T13:17:00Z","publication":"Algebra & Number Theory","oa":1,"type":"journal_article","department":[{"_id":"TiBr"}],"citation":{"mla":"Faisant, Loïs. “Motivic Distribution of Rational Curves and Twisted Products of Toric Varieties.” <i>Algebra &#38; Number Theory</i>, vol. 19, Mathematical Sciences Publishers, 2025, pp. 883–965, doi:<a href=\"https://doi.org/10.2140/ant.2025.19.883\">10.2140/ant.2025.19.883</a>.","ama":"Faisant L. Motivic distribution of rational curves and twisted products of toric varieties. <i>Algebra &#38; Number Theory</i>. 2025;19:883-965. doi:<a href=\"https://doi.org/10.2140/ant.2025.19.883\">10.2140/ant.2025.19.883</a>","short":"L. Faisant, Algebra &#38; Number Theory 19 (2025) 883–965.","ista":"Faisant L. 2025. Motivic distribution of rational curves and twisted products of toric varieties. Algebra &#38; Number Theory. 19, 883–965.","apa":"Faisant, L. (2025). Motivic distribution of rational curves and twisted products of toric varieties. <i>Algebra &#38; Number Theory</i>. Mathematical Sciences Publishers. <a href=\"https://doi.org/10.2140/ant.2025.19.883\">https://doi.org/10.2140/ant.2025.19.883</a>","ieee":"L. Faisant, “Motivic distribution of rational curves and twisted products of toric varieties,” <i>Algebra &#38; Number Theory</i>, vol. 19. Mathematical Sciences Publishers, pp. 883–965, 2025.","chicago":"Faisant, Loïs. “Motivic Distribution of Rational Curves and Twisted Products of Toric Varieties.” <i>Algebra &#38; Number Theory</i>. Mathematical Sciences Publishers, 2025. <a href=\"https://doi.org/10.2140/ant.2025.19.883\">https://doi.org/10.2140/ant.2025.19.883</a>."},"acknowledgement":"I am very grateful to my Ph.D. advisor Emmanuel Peyre for all the remarks and suggestions he made during the writing of this article. I warmly thank Margaret Bilu and Tim Browning for some valuable comments they made on a preliminary version of this work. I would like to thank David Bourqui as well for several helpful conversations. Finally, I thank the anonymous referee for their very careful reading and their numerous comments and suggestions which helped me a lot in improving the exposition, besides fixing several typos, and Elizabeth Weaver for the final editing work. During the revision process of this work, the author received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 101034413.","publication_identifier":{"eissn":["1944-7833"]},"doi":"10.2140/ant.2025.19.883","PlanS_conform":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_type":"original","corr_author":"1","ddc":["510"],"date_created":"2025-02-18T13:33:14Z","has_accepted_license":"1","OA_type":"diamond","volume":19,"ec_funded":1,"tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"page":"883-965","title":"Motivic distribution of rational curves and twisted products of toric varieties","quality_controlled":"1","author":[{"first_name":"Loïs","full_name":"Faisant, Loïs","last_name":"Faisant","id":"26ca6926-5797-11ee-9232-f8b51bd19631"}],"external_id":{"arxiv":["2302.07339"]},"language":[{"iso":"eng"}],"intvolume":"        19","status":"public"},{"publication_status":"submitted","OA_place":"repository","project":[{"grant_number":"101034413","call_identifier":"H2020","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c","name":"IST-BRIDGE: International postdoctoral program"}],"article_processing_charge":"No","oa_version":"Preprint","abstract":[{"text":"Using the formalism of Cox rings and universal torsors, we prove a decomposition of the Grothendieck motive of the moduli space of morphisms from an arbitrary smooth projective curve to a Mori Dream Space (MDS).\r\n For the simplest cases of MDS, that of toric varieties, we use this decomposition to prove an instance of the motivic Batyrev--Manin--Peyre principle for curves satisfying tangency conditions with respect to the boundary divisors, often called Campana curves.","lang":"eng"}],"year":"2025","month":"02","arxiv":1,"date_updated":"2025-04-14T07:54:52Z","date_published":"2025-02-17T00:00:00Z","main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2502.11704","open_access":"1"}],"publication":"arXiv","day":"17","_id":"19055","acknowledgement":"The author acknowledges funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No 101034413.\r\n","doi":"10.48550/ARXIV.2502.11704","oa":1,"type":"preprint","citation":{"ieee":"L. Faisant, “Motivic counting of rational curves with tangency conditions via universal torsors,” <i>arXiv</i>. .","chicago":"Faisant, Loïs. “Motivic Counting of Rational Curves with Tangency Conditions via Universal Torsors.” <i>ArXiv</i>, n.d. <a href=\"https://doi.org/10.48550/ARXIV.2502.11704\">https://doi.org/10.48550/ARXIV.2502.11704</a>.","short":"L. Faisant, ArXiv (n.d.).","mla":"Faisant, Loïs. “Motivic Counting of Rational Curves with Tangency Conditions via Universal Torsors.” <i>ArXiv</i>, 2502.11704, doi:<a href=\"https://doi.org/10.48550/ARXIV.2502.11704\">10.48550/ARXIV.2502.11704</a>.","ama":"Faisant L. Motivic counting of rational curves with tangency conditions via universal torsors. <i>arXiv</i>. doi:<a href=\"https://doi.org/10.48550/ARXIV.2502.11704\">10.48550/ARXIV.2502.11704</a>","ista":"Faisant L. Motivic counting of rational curves with tangency conditions via universal torsors. arXiv, 2502.11704.","apa":"Faisant, L. (n.d.). Motivic counting of rational curves with tangency conditions via universal torsors. <i>arXiv</i>. <a href=\"https://doi.org/10.48550/ARXIV.2502.11704\">https://doi.org/10.48550/ARXIV.2502.11704</a>"},"department":[{"_id":"TiBr"}],"corr_author":"1","date_created":"2025-02-18T13:34:07Z","article_number":"2502.11704","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","ec_funded":1,"OA_type":"green","title":"Motivic counting of rational curves with tangency conditions via universal torsors","status":"public","author":[{"first_name":"Loïs","full_name":"Faisant, Loïs","last_name":"Faisant","id":"26ca6926-5797-11ee-9232-f8b51bd19631"}],"external_id":{"arxiv":["2502.11704"]},"language":[{"iso":"eng"}]}]