[{"date_created":"2018-12-11T11:44:33Z","page":"465 - 479","author":[{"last_name":"Gilad","first_name":"Eran","full_name":"Gilad, Eran"},{"full_name":"Brown, Trevor A","first_name":"Trevor A","last_name":"Brown","id":"3569F0A0-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Mark","full_name":"Oskin, Mark","last_name":"Oskin"},{"full_name":"Etsion, Yoav","first_name":"Yoav","last_name":"Etsion"}],"_id":"85","volume":11014,"day":"01","article_processing_charge":"No","intvolume":"     11014","acknowledgement":"Trevor Brown was supported in part by the ISF (grants 2005/17 & 1749/14) and by a NSERC post-doctoral fellowship.","language":[{"iso":"eng"}],"user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","publisher":"Springer","year":"2018","status":"public","citation":{"ieee":"E. Gilad, T. A. Brown, M. Oskin, and Y. Etsion, “Snapshot based synchronization: A fast replacement for Hand-over-Hand locking,” presented at the Euro-Par: European Conference on Parallel Processing, Turin, Italy, 2018, vol. 11014, pp. 465–479.","mla":"Gilad, Eran, et al. <i>Snapshot Based Synchronization: A Fast Replacement for Hand-over-Hand Locking</i>. Vol. 11014, Springer, 2018, pp. 465–79, doi:<a href=\"https://doi.org/10.1007/978-3-319-96983-1_33\">10.1007/978-3-319-96983-1_33</a>.","ama":"Gilad E, Brown TA, Oskin M, Etsion Y. Snapshot based synchronization: A fast replacement for Hand-over-Hand locking. In: Vol 11014. Springer; 2018:465-479. doi:<a href=\"https://doi.org/10.1007/978-3-319-96983-1_33\">10.1007/978-3-319-96983-1_33</a>","chicago":"Gilad, Eran, Trevor A Brown, Mark Oskin, and Yoav Etsion. “Snapshot Based Synchronization: A Fast Replacement for Hand-over-Hand Locking,” 11014:465–79. Springer, 2018. <a href=\"https://doi.org/10.1007/978-3-319-96983-1_33\">https://doi.org/10.1007/978-3-319-96983-1_33</a>.","ista":"Gilad E, Brown TA, Oskin M, Etsion Y. 2018. Snapshot based synchronization: A fast replacement for Hand-over-Hand locking. Euro-Par: European Conference on Parallel Processing, LNCS, vol. 11014, 465–479.","apa":"Gilad, E., Brown, T. A., Oskin, M., &#38; Etsion, Y. (2018). Snapshot based synchronization: A fast replacement for Hand-over-Hand locking (Vol. 11014, pp. 465–479). Presented at the Euro-Par: European Conference on Parallel Processing, Turin, Italy: Springer. <a href=\"https://doi.org/10.1007/978-3-319-96983-1_33\">https://doi.org/10.1007/978-3-319-96983-1_33</a>","short":"E. Gilad, T.A. Brown, M. Oskin, Y. Etsion, in:, Springer, 2018, pp. 465–479."},"quality_controlled":"1","external_id":{"isi":["000851042300031"]},"department":[{"_id":"DaAl"}],"scopus_import":"1","ddc":["000"],"project":[{"name":"NSERC Postdoctoral fellowship","_id":"26450934-B435-11E9-9278-68D0E5697425"}],"alternative_title":["LNCS"],"conference":{"start_date":"2018-08-27","name":"Euro-Par: European Conference on Parallel Processing","end_date":"2018-08-31","location":"Turin, Italy"},"oa_version":"Preprint","type":"conference","isi":1,"has_accepted_license":"1","file_date_updated":"2020-07-14T12:48:14Z","publication_status":"published","doi":"10.1007/978-3-319-96983-1_33","publist_id":"7969","file":[{"file_name":"2018_Brown.pdf","file_id":"5954","content_type":"application/pdf","date_updated":"2020-07-14T12:48:14Z","date_created":"2019-02-12T07:40:40Z","creator":"dernst","checksum":"13a3f250be8878405e791b53c19722ad","relation":"main_file","access_level":"open_access","file_size":665372}],"month":"08","title":"Snapshot based synchronization: A fast replacement for Hand-over-Hand locking","date_published":"2018-08-01T00:00:00Z","date_updated":"2026-04-16T09:53:41Z","publication_identifier":{"issn":["0302-9743"]},"abstract":[{"lang":"eng","text":"Concurrent accesses to shared data structures must be synchronized to avoid data races. Coarse-grained synchronization, which locks the entire data structure, is easy to implement but does not scale. Fine-grained synchronization can scale well, but can be hard to reason about. Hand-over-hand locking, in which operations are pipelined as they traverse the data structure, combines fine-grained synchronization with ease of use. However, the traditional implementation suffers from inherent overheads. This paper introduces snapshot-based synchronization (SBS), a novel hand-over-hand locking mechanism. SBS decouples the synchronization state from the data, significantly improving cache utilization. Further, it relies on guarantees provided by pipelining to minimize synchronization that requires cross-thread communication. Snapshot-based synchronization thus scales much better than traditional hand-over-hand locking, while maintaining the same ease of use."}],"oa":1},{"ec_funded":1,"department":[{"_id":"KrCh"},{"_id":"ToHe"}],"scopus_import":1,"status":"public","publication":"Principles of Modeling","citation":{"short":"K. Chatterjee, T.A. Henzinger, J. Otop, in:, M. Lohstroh, P. Derler, M. Sirjani (Eds.), Principles of Modeling, Springer, 2018, pp. 143–161.","apa":"Chatterjee, K., Henzinger, T. A., &#38; Otop, J. (2018). Computing average response time. In M. Lohstroh, P. Derler, &#38; M. Sirjani (Eds.), <i>Principles of Modeling</i> (Vol. 10760, pp. 143–161). Springer. <a href=\"https://doi.org/10.1007/978-3-319-95246-8_9\">https://doi.org/10.1007/978-3-319-95246-8_9</a>","ista":"Chatterjee K, Henzinger TA, Otop J. 2018.Computing average response time. In: Principles of Modeling. LNCS, vol. 10760, 143–161.","chicago":"Chatterjee, Krishnendu, Thomas A Henzinger, and Jan Otop. “Computing Average Response Time.” In <i>Principles of Modeling</i>, edited by Marten Lohstroh, Patricia Derler, and Marjan Sirjani, 10760:143–61. Springer, 2018. <a href=\"https://doi.org/10.1007/978-3-319-95246-8_9\">https://doi.org/10.1007/978-3-319-95246-8_9</a>.","ama":"Chatterjee K, Henzinger TA, Otop J. Computing average response time. In: Lohstroh M, Derler P, Sirjani M, eds. <i>Principles of Modeling</i>. Vol 10760. Springer; 2018:143-161. doi:<a href=\"https://doi.org/10.1007/978-3-319-95246-8_9\">10.1007/978-3-319-95246-8_9</a>","ieee":"K. Chatterjee, T. A. Henzinger, and J. Otop, “Computing average response time,” in <i>Principles of Modeling</i>, vol. 10760, M. Lohstroh, P. Derler, and M. Sirjani, Eds. Springer, 2018, pp. 143–161.","mla":"Chatterjee, Krishnendu, et al. “Computing Average Response Time.” <i>Principles of Modeling</i>, edited by Marten Lohstroh et al., vol. 10760, Springer, 2018, pp. 143–61, doi:<a href=\"https://doi.org/10.1007/978-3-319-95246-8_9\">10.1007/978-3-319-95246-8_9</a>."},"quality_controlled":"1","year":"2018","publisher":"Springer","intvolume":"     10760","language":[{"iso":"eng"}],"acknowledgement":"This research was supported in part by the Austrian Science Fund (FWF) under grants S11402-N23, S11407-N23 (RiSE/SHiNE) and Z211-N23 (Wittgenstein Award), ERC Start grant (279307: Graph Games), Vienna Science and Technology Fund (WWTF) through project ICT15-003 and by the National Science Centre (NCN), Poland under grant 2014/15/D/ST6/04543.","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","editor":[{"last_name":"Lohstroh","full_name":"Lohstroh, Marten","first_name":"Marten"},{"last_name":"Derler","full_name":"Derler, Patricia","first_name":"Patricia"},{"last_name":"Sirjani","full_name":"Sirjani, Marjan","first_name":"Marjan"}],"day":"20","volume":10760,"date_created":"2018-12-11T11:44:33Z","author":[{"id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","last_name":"Chatterjee","first_name":"Krishnendu","full_name":"Chatterjee, Krishnendu","orcid":"0000-0002-4561-241X"},{"orcid":"0000−0002−2985−7724","first_name":"Thomas A","full_name":"Henzinger, Thomas A","last_name":"Henzinger","id":"40876CD8-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Otop","id":"2FC5DA74-F248-11E8-B48F-1D18A9856A87","first_name":"Jan","full_name":"Otop, Jan"}],"page":"143 - 161","_id":"86","abstract":[{"text":"Responsiveness—the requirement that every request to a system be eventually handled—is one of the fundamental liveness properties of a reactive system. Average response time is a quantitative measure for the responsiveness requirement used commonly in performance evaluation. We show how average response time can be computed on state-transition graphs, on Markov chains, and on game graphs. In all three cases, we give polynomial-time algorithms.","lang":"eng"}],"oa":1,"title":"Computing average response time","date_published":"2018-07-20T00:00:00Z","date_updated":"2025-04-15T06:26:15Z","file":[{"date_updated":"2020-07-14T12:48:14Z","file_name":"2018_PrinciplesModeling_Chatterjee.pdf","content_type":"application/pdf","file_id":"7053","creator":"dernst","date_created":"2019-11-19T08:22:18Z","file_size":516307,"access_level":"open_access","relation":"main_file","checksum":"9995c6ce6957333baf616fc4f20be597"}],"month":"07","publication_status":"published","doi":"10.1007/978-3-319-95246-8_9","publist_id":"7968","has_accepted_license":"1","file_date_updated":"2020-07-14T12:48:14Z","oa_version":"Submitted Version","type":"book_chapter","alternative_title":["LNCS"],"ddc":["000"],"project":[{"call_identifier":"FWF","grant_number":"S 11407_N23","name":"Rigorous Systems Engineering","_id":"25832EC2-B435-11E9-9278-68D0E5697425"},{"_id":"25863FF4-B435-11E9-9278-68D0E5697425","name":"Game Theory","call_identifier":"FWF","grant_number":"S11407"},{"grant_number":"Z211","call_identifier":"FWF","_id":"25F42A32-B435-11E9-9278-68D0E5697425","name":"Formal methods for the design and analysis of complex systems"},{"grant_number":"279307","call_identifier":"FP7","name":"Quantitative Graph Games: Theory and Applications","_id":"2581B60A-B435-11E9-9278-68D0E5697425"},{"grant_number":"ICT15-003","name":"Efficient Algorithms for Computer Aided Verification","_id":"25892FC0-B435-11E9-9278-68D0E5697425"}]},{"citation":{"ama":"Gregor C, Sidenstein SC, Andresen M, Sahl SJ, Danzl JG, Hell SW. Novel reversibly switchable fluorescent proteins for RESOLFT and STED nanoscopy engineered from the bacterial photoreceptor YtvA. <i>Scientific Reports</i>. 2018;8. doi:<a href=\"https://doi.org/10.1038/s41598-018-19947-1\">10.1038/s41598-018-19947-1</a>","ieee":"C. Gregor, S. C. Sidenstein, M. Andresen, S. J. Sahl, J. G. Danzl, and S. W. Hell, “Novel reversibly switchable fluorescent proteins for RESOLFT and STED nanoscopy engineered from the bacterial photoreceptor YtvA,” <i>Scientific Reports</i>, vol. 8. Springer Nature, 2018.","mla":"Gregor, Carola, et al. “Novel Reversibly Switchable Fluorescent Proteins for RESOLFT and STED Nanoscopy Engineered from the Bacterial Photoreceptor YtvA.” <i>Scientific Reports</i>, vol. 8, 2724, Springer Nature, 2018, doi:<a href=\"https://doi.org/10.1038/s41598-018-19947-1\">10.1038/s41598-018-19947-1</a>.","short":"C. Gregor, S.C. Sidenstein, M. Andresen, S.J. Sahl, J.G. Danzl, S.W. Hell, Scientific Reports 8 (2018).","apa":"Gregor, C., Sidenstein, S. C., Andresen, M., Sahl, S. J., Danzl, J. G., &#38; Hell, S. W. (2018). Novel reversibly switchable fluorescent proteins for RESOLFT and STED nanoscopy engineered from the bacterial photoreceptor YtvA. <i>Scientific Reports</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41598-018-19947-1\">https://doi.org/10.1038/s41598-018-19947-1</a>","chicago":"Gregor, Carola, Sven C. Sidenstein, Martin Andresen, Steffen J. Sahl, Johann G Danzl, and Stefan W. Hell. “Novel Reversibly Switchable Fluorescent Proteins for RESOLFT and STED Nanoscopy Engineered from the Bacterial Photoreceptor YtvA.” <i>Scientific Reports</i>. Springer Nature, 2018. <a href=\"https://doi.org/10.1038/s41598-018-19947-1\">https://doi.org/10.1038/s41598-018-19947-1</a>.","ista":"Gregor C, Sidenstein SC, Andresen M, Sahl SJ, Danzl JG, Hell SW. 2018. Novel reversibly switchable fluorescent proteins for RESOLFT and STED nanoscopy engineered from the bacterial photoreceptor YtvA. Scientific Reports. 8, 2724."},"quality_controlled":"1","status":"public","publication":"Scientific Reports","external_id":{"isi":["000424630400037"],"pmid":["29426833"]},"scopus_import":"1","department":[{"_id":"JoDa"}],"article_processing_charge":"No","intvolume":"         8","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","language":[{"iso":"eng"}],"publisher":"Springer Nature","year":"2018","article_number":"2724","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"day":"09","date_created":"2020-10-06T16:33:37Z","_id":"8618","author":[{"full_name":"Gregor, Carola","first_name":"Carola","last_name":"Gregor"},{"first_name":"Sven C.","full_name":"Sidenstein, Sven C.","last_name":"Sidenstein"},{"first_name":"Martin","full_name":"Andresen, Martin","last_name":"Andresen"},{"first_name":"Steffen J.","full_name":"Sahl, Steffen J.","last_name":"Sahl"},{"id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87","last_name":"Danzl","first_name":"Johann G","full_name":"Danzl, Johann G","orcid":"0000-0001-8559-3973"},{"last_name":"Hell","first_name":"Stefan W.","full_name":"Hell, Stefan W."}],"volume":8,"oa":1,"abstract":[{"text":"The reversibly switchable fluorescent proteins (RSFPs) commonly used for RESOLFT nanoscopy have been developed from fluorescent proteins of the GFP superfamily. These proteins are bright, but exhibit several drawbacks such as relatively large size, oxygen-dependence, sensitivity to low pH, and limited switching speed. Therefore, RSFPs from other origins with improved properties need to be explored. Here, we report the development of two RSFPs based on the LOV domain of the photoreceptor protein YtvA from Bacillus subtilis. LOV domains obtain their fluorescence by association with the abundant cellular cofactor flavin mononucleotide (FMN). Under illumination with blue and ultraviolet light, they undergo a photocycle, making these proteins inherently photoswitchable. Our first improved variant, rsLOV1, can be used for RESOLFT imaging, whereas rsLOV2 proved useful for STED nanoscopy of living cells with a resolution of down to 50 nm. In addition to their smaller size compared to GFP-related proteins (17 kDa instead of 27 kDa) and their usability at low pH, rsLOV1 and rsLOV2 exhibit faster switching kinetics, switching on and off 3 times faster than rsEGFP2, the fastest-switching RSFP reported to date. Therefore, LOV-domain-based RSFPs have potential for applications where the switching speed of GFP-based proteins is limiting.","lang":"eng"}],"month":"02","file":[{"success":1,"checksum":"e642080fcbde9584c63544f587c74f03","file_size":2818077,"access_level":"open_access","relation":"main_file","creator":"dernst","date_created":"2020-10-06T16:35:16Z","file_name":"2018_ScientificReports_Gregor.pdf","date_updated":"2020-10-06T16:35:16Z","file_id":"8619","content_type":"application/pdf"}],"title":"Novel reversibly switchable fluorescent proteins for RESOLFT and STED nanoscopy engineered from the bacterial photoreceptor YtvA","pmid":1,"publication_identifier":{"issn":["2045-2322"]},"date_updated":"2024-10-21T06:02:43Z","article_type":"original","date_published":"2018-02-09T00:00:00Z","oa_version":"Published Version","isi":1,"type":"journal_article","publication_status":"published","file_date_updated":"2020-10-06T16:35:16Z","has_accepted_license":"1","doi":"10.1038/s41598-018-19947-1","ddc":["570"],"keyword":["Multidisciplinary"]},{"arxiv":1,"doi":"10.1214/18-AAP1389","publication_status":"published","publist_id":"7967","type":"journal_article","main_file_link":[{"url":"https://arxiv.org/abs/1705.02870","open_access":"1"}],"isi":1,"oa_version":"Preprint","project":[{"_id":"2561EBF4-B435-11E9-9278-68D0E5697425","name":"Persistence and stability of geometric complexes","call_identifier":"FWF","grant_number":"I02979-N35"}],"abstract":[{"lang":"eng","text":"Using the geodesic distance on the n-dimensional sphere, we study the expected radius function of the Delaunay mosaic of a random set of points. Specifically, we consider the partition of the mosaic into intervals of the radius function and determine the expected number of intervals whose radii are less than or equal to a given threshold. We find that the expectations are essentially the same as for the Poisson–Delaunay mosaic in n-dimensional Euclidean space. Assuming the points are not contained in a hemisphere, the Delaunay mosaic is isomorphic to the boundary complex of the convex hull in Rn+1, so we also get the expected number of faces of a random inscribed polytope. As proved in Antonelli et al. [Adv. in Appl. Probab. 9–12 (1977–1980)], an orthant section of the n-sphere is isometric to the standard n-simplex equipped with the Fisher information metric. It follows that the latter space has similar stochastic properties as the n-dimensional Euclidean space. Our results are therefore relevant in information geometry and in population genetics."}],"oa":1,"date_published":"2018-10-01T00:00:00Z","article_type":"original","date_updated":"2026-04-08T14:19:30Z","title":"Random inscribed polytopes have similar radius functions as Poisson-Delaunay mosaics","month":"10","day":"01","volume":28,"page":"3215 - 3238","author":[{"orcid":"0000-0002-9823-6833","full_name":"Edelsbrunner, Herbert","first_name":"Herbert","last_name":"Edelsbrunner","id":"3FB178DA-F248-11E8-B48F-1D18A9856A87"},{"orcid":"0000-0002-0659-3201","full_name":"Nikitenko, Anton","first_name":"Anton","last_name":"Nikitenko","id":"3E4FF1BA-F248-11E8-B48F-1D18A9856A87"}],"_id":"87","related_material":{"record":[{"relation":"dissertation_contains","status":"public","id":"6287"}]},"date_created":"2018-12-11T11:44:33Z","department":[{"_id":"HeEd"}],"scopus_import":"1","external_id":{"isi":["000442893500018"],"arxiv":["1705.02870"]},"publication":"Annals of Applied Probability","status":"public","quality_controlled":"1","citation":{"apa":"Edelsbrunner, H., &#38; Nikitenko, A. (2018). Random inscribed polytopes have similar radius functions as Poisson-Delaunay mosaics. <i>Annals of Applied Probability</i>. Institute of Mathematical Statistics. <a href=\"https://doi.org/10.1214/18-AAP1389\">https://doi.org/10.1214/18-AAP1389</a>","short":"H. Edelsbrunner, A. Nikitenko, Annals of Applied Probability 28 (2018) 3215–3238.","chicago":"Edelsbrunner, Herbert, and Anton Nikitenko. “Random Inscribed Polytopes Have Similar Radius Functions as Poisson-Delaunay Mosaics.” <i>Annals of Applied Probability</i>. Institute of Mathematical Statistics, 2018. <a href=\"https://doi.org/10.1214/18-AAP1389\">https://doi.org/10.1214/18-AAP1389</a>.","ista":"Edelsbrunner H, Nikitenko A. 2018. Random inscribed polytopes have similar radius functions as Poisson-Delaunay mosaics. Annals of Applied Probability. 28(5), 3215–3238.","ama":"Edelsbrunner H, Nikitenko A. Random inscribed polytopes have similar radius functions as Poisson-Delaunay mosaics. <i>Annals of Applied Probability</i>. 2018;28(5):3215-3238. doi:<a href=\"https://doi.org/10.1214/18-AAP1389\">10.1214/18-AAP1389</a>","mla":"Edelsbrunner, Herbert, and Anton Nikitenko. “Random Inscribed Polytopes Have Similar Radius Functions as Poisson-Delaunay Mosaics.” <i>Annals of Applied Probability</i>, vol. 28, no. 5, Institute of Mathematical Statistics, 2018, pp. 3215–38, doi:<a href=\"https://doi.org/10.1214/18-AAP1389\">10.1214/18-AAP1389</a>.","ieee":"H. Edelsbrunner and A. Nikitenko, “Random inscribed polytopes have similar radius functions as Poisson-Delaunay mosaics,” <i>Annals of Applied Probability</i>, vol. 28, no. 5. Institute of Mathematical Statistics, pp. 3215–3238, 2018."},"issue":"5","year":"2018","publisher":"Institute of Mathematical Statistics","language":[{"iso":"eng"}],"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","article_processing_charge":"No","intvolume":"        28"},{"volume":14,"author":[{"full_name":"Aubret, Antoine","first_name":"Antoine","last_name":"Aubret"},{"orcid":"0000-0002-7253-9465","full_name":"Palacci, Jérémie A","first_name":"Jérémie A","id":"8fb92548-2b22-11eb-b7c1-a3f0d08d7c7d","last_name":"Palacci"}],"page":"9577-9588","_id":"9053","date_created":"2021-02-01T13:44:41Z","day":"21","issue":"47","year":"2018","publisher":"Royal Society of Chemistry ","language":[{"iso":"eng"}],"user_id":"D865714E-FA4E-11E9-B85B-F5C5E5697425","intvolume":"        14","article_processing_charge":"No","scopus_import":"1","external_id":{"pmid":["30456407"],"arxiv":["1909.11121"]},"publication":"Soft Matter","status":"public","citation":{"mla":"Aubret, Antoine, and Jérémie A. Palacci. “Diffusiophoretic Design of Self-Spinning Microgears from Colloidal Microswimmers.” <i>Soft Matter</i>, vol. 14, no. 47, Royal Society of Chemistry , 2018, pp. 9577–88, doi:<a href=\"https://doi.org/10.1039/c8sm01760c\">10.1039/c8sm01760c</a>.","ieee":"A. Aubret and J. A. Palacci, “Diffusiophoretic design of self-spinning microgears from colloidal microswimmers,” <i>Soft Matter</i>, vol. 14, no. 47. Royal Society of Chemistry , pp. 9577–9588, 2018.","ama":"Aubret A, Palacci JA. Diffusiophoretic design of self-spinning microgears from colloidal microswimmers. <i>Soft Matter</i>. 2018;14(47):9577-9588. doi:<a href=\"https://doi.org/10.1039/c8sm01760c\">10.1039/c8sm01760c</a>","chicago":"Aubret, Antoine, and Jérémie A Palacci. “Diffusiophoretic Design of Self-Spinning Microgears from Colloidal Microswimmers.” <i>Soft Matter</i>. Royal Society of Chemistry , 2018. <a href=\"https://doi.org/10.1039/c8sm01760c\">https://doi.org/10.1039/c8sm01760c</a>.","ista":"Aubret A, Palacci JA. 2018. Diffusiophoretic design of self-spinning microgears from colloidal microswimmers. Soft Matter. 14(47), 9577–9588.","apa":"Aubret, A., &#38; Palacci, J. A. (2018). Diffusiophoretic design of self-spinning microgears from colloidal microswimmers. <i>Soft Matter</i>. Royal Society of Chemistry . <a href=\"https://doi.org/10.1039/c8sm01760c\">https://doi.org/10.1039/c8sm01760c</a>","short":"A. Aubret, J.A. Palacci, Soft Matter 14 (2018) 9577–9588."},"quality_controlled":"1","extern":"1","keyword":["General Chemistry","Condensed Matter Physics"],"arxiv":1,"publication_status":"published","doi":"10.1039/c8sm01760c","type":"journal_article","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1909.11121"}],"oa_version":"Preprint","article_type":"original","date_published":"2018-12-21T00:00:00Z","date_updated":"2023-02-23T13:47:43Z","publication_identifier":{"eissn":["1744-6848"],"issn":["1744-683X"]},"pmid":1,"title":"Diffusiophoretic design of self-spinning microgears from colloidal microswimmers","month":"12","abstract":[{"lang":"eng","text":"The development of strategies to assemble microscopic machines from dissipative building blocks are essential on the route to novel active materials. We recently demonstrated the hierarchical self-assembly of phoretic microswimmers into self-spinning microgears and their synchronization by diffusiophoretic interactions [Aubret et al., Nat. Phys., 2018]. In this paper, we adopt a pedagogical approach and expose our strategy to control self-assembly and build machines using phoretic phenomena. We notably introduce Highly Inclined Laminated Optical sheets microscopy (HILO) to image and characterize anisotropic and dynamic diffusiophoretic interactions, which cannot be performed by conventional fluorescence microscopy. The dynamics of a (haematite) photocatalytic material immersed in (hydrogen peroxide) fuel under various illumination patterns is first described and quantitatively rationalized by a model of diffusiophoresis, the migration of a colloidal particle in a concentration gradient. It is further exploited to design phototactic microswimmers that direct towards the high intensity of light, as a result of the reorientation of the haematite in a light gradient. We finally show the assembly of self-spinning microgears from colloidal microswimmers and carefully characterize the interactions using HILO techniques. The results are compared with analytical and numerical predictions and agree quantitatively, stressing the important role played by concentration gradients induced by chemical activity to control and design interactions. Because the approach described hereby is generic, this works paves the way for the rational design of machines by controlling phoretic phenomena."}],"oa":1},{"arxiv":1,"doi":"10.1038/s41567-018-0227-4","publication_status":"published","type":"journal_article","main_file_link":[{"url":"https://arxiv.org/abs/1810.01033","open_access":"1"}],"oa_version":"Preprint","extern":"1","oa":1,"abstract":[{"text":"Self-assembly is the autonomous organization of components into patterns or structures: an essential ingredient of biology and a desired route to complex organization1. At equilibrium, the structure is encoded through specific interactions2,3,4,5,6,7,8, at an unfavourable entropic cost for the system. An alternative approach, widely used by nature, uses energy input to bypass the entropy bottleneck and develop features otherwise impossible at equilibrium9. Dissipative building blocks that inject energy locally were made available by recent advances in colloidal science10,11 but have not been used to control self-assembly. Here we show the targeted formation of self-powered microgears from active particles and their autonomous synchronization into dynamical superstructures. We use a photoactive component that consumes fuel, haematite, to devise phototactic microswimmers that form self-spinning microgears following spatiotemporal light patterns. The gears are coupled via their chemical clouds by diffusiophoresis12 and constitute the elementary bricks of synchronized superstructures, which autonomously regulate their dynamics. The results are quantitatively rationalized on the basis of a stochastic description of diffusio-phoretic oscillators dynamically coupled by chemical gradients. Our findings harness non-equilibrium phoretic phenomena to program interactions and direct self-assembly with fidelity and specificity. It lays the groundwork for the autonomous construction of dynamical architectures and functional micro-machinery.","lang":"eng"}],"publication_identifier":{"eissn":["1745-2481"],"issn":["1745-2473"]},"date_updated":"2023-02-23T13:48:02Z","date_published":"2018-11-01T00:00:00Z","article_type":"original","title":"Targeted assembly and synchronization of self-spinning microgears","month":"11","day":"01","volume":14,"_id":"9062","author":[{"first_name":"Antoine","full_name":"Aubret, Antoine","last_name":"Aubret"},{"last_name":"Youssef","first_name":"Mena","full_name":"Youssef, Mena"},{"full_name":"Sacanna, Stefano","first_name":"Stefano","last_name":"Sacanna"},{"last_name":"Palacci","id":"8fb92548-2b22-11eb-b7c1-a3f0d08d7c7d","full_name":"Palacci, Jérémie A","first_name":"Jérémie A","orcid":"0000-0002-7253-9465"}],"page":"1114-1118","date_created":"2021-02-02T13:52:49Z","scopus_import":"1","external_id":{"arxiv":["1810.01033"]},"quality_controlled":"1","citation":{"short":"A. Aubret, M. Youssef, S. Sacanna, J.A. Palacci, Nature Physics 14 (2018) 1114–1118.","apa":"Aubret, A., Youssef, M., Sacanna, S., &#38; Palacci, J. A. (2018). Targeted assembly and synchronization of self-spinning microgears. <i>Nature Physics</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41567-018-0227-4\">https://doi.org/10.1038/s41567-018-0227-4</a>","ista":"Aubret A, Youssef M, Sacanna S, Palacci JA. 2018. Targeted assembly and synchronization of self-spinning microgears. Nature Physics. 14(11), 1114–1118.","chicago":"Aubret, Antoine, Mena Youssef, Stefano Sacanna, and Jérémie A Palacci. “Targeted Assembly and Synchronization of Self-Spinning Microgears.” <i>Nature Physics</i>. Springer Nature, 2018. <a href=\"https://doi.org/10.1038/s41567-018-0227-4\">https://doi.org/10.1038/s41567-018-0227-4</a>.","ama":"Aubret A, Youssef M, Sacanna S, Palacci JA. Targeted assembly and synchronization of self-spinning microgears. <i>Nature Physics</i>. 2018;14(11):1114-1118. doi:<a href=\"https://doi.org/10.1038/s41567-018-0227-4\">10.1038/s41567-018-0227-4</a>","ieee":"A. Aubret, M. Youssef, S. Sacanna, and J. A. Palacci, “Targeted assembly and synchronization of self-spinning microgears,” <i>Nature Physics</i>, vol. 14, no. 11. Springer Nature, pp. 1114–1118, 2018.","mla":"Aubret, Antoine, et al. “Targeted Assembly and Synchronization of Self-Spinning Microgears.” <i>Nature Physics</i>, vol. 14, no. 11, Springer Nature, 2018, pp. 1114–18, doi:<a href=\"https://doi.org/10.1038/s41567-018-0227-4\">10.1038/s41567-018-0227-4</a>."},"status":"public","publication":"Nature Physics","issue":"11","publisher":"Springer Nature","year":"2018","user_id":"D865714E-FA4E-11E9-B85B-F5C5E5697425","language":[{"iso":"eng"}],"article_processing_charge":"No","intvolume":"        14"},{"article_processing_charge":"No","intvolume":"        30","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","language":[{"iso":"eng"}],"publisher":"Wiley","year":"2018","issue":"52","article_number":"1805564","quality_controlled":"1","citation":{"ama":"Lee N, Ko E, Choi HY, et al. Antiferromagnet‐based spintronic functionality by controlling isospin domains in a layered perovskite iridate. <i>Advanced Materials</i>. 2018;30(52). doi:<a href=\"https://doi.org/10.1002/adma.201805564\">10.1002/adma.201805564</a>","ieee":"N. Lee <i>et al.</i>, “Antiferromagnet‐based spintronic functionality by controlling isospin domains in a layered perovskite iridate,” <i>Advanced Materials</i>, vol. 30, no. 52. Wiley, 2018.","mla":"Lee, Nara, et al. “Antiferromagnet‐based Spintronic Functionality by Controlling Isospin Domains in a Layered Perovskite Iridate.” <i>Advanced Materials</i>, vol. 30, no. 52, 1805564, Wiley, 2018, doi:<a href=\"https://doi.org/10.1002/adma.201805564\">10.1002/adma.201805564</a>.","apa":"Lee, N., Ko, E., Choi, H. Y., Hong, Y. J., Nauman, M., Kang, W., … Jo, Y. (2018). Antiferromagnet‐based spintronic functionality by controlling isospin domains in a layered perovskite iridate. <i>Advanced Materials</i>. Wiley. <a href=\"https://doi.org/10.1002/adma.201805564\">https://doi.org/10.1002/adma.201805564</a>","short":"N. Lee, E. Ko, H.Y. Choi, Y.J. Hong, M. Nauman, W. Kang, H.J. Choi, Y.J. Choi, Y. Jo, Advanced Materials 30 (2018).","ista":"Lee N, Ko E, Choi HY, Hong YJ, Nauman M, Kang W, Choi HJ, Choi YJ, Jo Y. 2018. Antiferromagnet‐based spintronic functionality by controlling isospin domains in a layered perovskite iridate. Advanced Materials. 30(52), 1805564.","chicago":"Lee, Nara, Eunjung Ko, Hwan Young Choi, Yun Jeong Hong, Muhammad Nauman, Woun Kang, Hyoung Joon Choi, Young Jai Choi, and Younjung Jo. “Antiferromagnet‐based Spintronic Functionality by Controlling Isospin Domains in a Layered Perovskite Iridate.” <i>Advanced Materials</i>. Wiley, 2018. <a href=\"https://doi.org/10.1002/adma.201805564\">https://doi.org/10.1002/adma.201805564</a>."},"status":"public","publication":"Advanced Materials","external_id":{"arxiv":["1811.04562"]},"date_created":"2021-02-02T15:50:58Z","_id":"9066","author":[{"last_name":"Lee","full_name":"Lee, Nara","first_name":"Nara"},{"last_name":"Ko","full_name":"Ko, Eunjung","first_name":"Eunjung"},{"full_name":"Choi, Hwan Young","first_name":"Hwan Young","last_name":"Choi"},{"first_name":"Yun Jeong","full_name":"Hong, Yun Jeong","last_name":"Hong"},{"id":"32c21954-2022-11eb-9d5f-af9f93c24e71","last_name":"Nauman","first_name":"Muhammad","full_name":"Nauman, Muhammad","orcid":"0000-0002-2111-4846"},{"last_name":"Kang","first_name":"Woun","full_name":"Kang, Woun"},{"full_name":"Choi, Hyoung Joon","first_name":"Hyoung Joon","last_name":"Choi"},{"full_name":"Choi, Young Jai","first_name":"Young Jai","last_name":"Choi"},{"last_name":"Jo","first_name":"Younjung","full_name":"Jo, Younjung"}],"volume":30,"day":"29","month":"10","title":"Antiferromagnet‐based spintronic functionality by controlling isospin domains in a layered perovskite iridate","publication_identifier":{"issn":["0935-9648","1521-4095"]},"date_updated":"2021-02-03T13:58:39Z","article_type":"original","date_published":"2018-10-29T00:00:00Z","abstract":[{"text":"The novel electronic state of the canted antiferromagnetic (AFM) insulator, strontium iridate (Sr2IrO4) has been well described by the spin-orbit-entangled isospin Jeff = 1/2, but the role of isospin in transport phenomena remains poorly understood. In this study, antiferromagnet-based spintronic functionality is demonstrated by combining unique characteristics of the isospin state in Sr2IrO4. Based on magnetic and transport measurements, large and highly anisotropic magnetoresistance (AMR) is obtained by manipulating the antiferromagnetic isospin domains. First-principles calculations suggest that electrons whose isospin directions are strongly coupled to in-plane net magnetic moment encounter the isospin mismatch when moving across antiferromagnetic domain boundaries, which generates a high resistance state. By rotating a magnetic field that aligns in-plane net moments and removes domain boundaries, the macroscopically-ordered isospins govern dynamic transport through the system, which leads to the extremely angle-sensitive AMR. As with this work that establishes a link between isospins and magnetotransport in strongly spin-orbit-coupled AFM Sr2IrO4, the peculiar AMR effect provides a beneficial foundation for fundamental and applied research on AFM spintronics.","lang":"eng"}],"extern":"1","keyword":["Mechanical Engineering","General Materials Science","Mechanics of Materials"],"oa_version":"Preprint","type":"journal_article","doi":"10.1002/adma.201805564","publication_status":"published","arxiv":1},{"volume":536,"author":[{"last_name":"Hussain","full_name":"Hussain, Tayyaba","first_name":"Tayyaba"},{"full_name":"Oh, Myeong-jun","first_name":"Myeong-jun","last_name":"Oh"},{"full_name":"Nauman, Muhammad","first_name":"Muhammad","orcid":"0000-0002-2111-4846","id":"32c21954-2022-11eb-9d5f-af9f93c24e71","last_name":"Nauman"},{"last_name":"Jo","full_name":"Jo, Younjung","first_name":"Younjung"},{"last_name":"Han","first_name":"Garam","full_name":"Han, Garam"},{"first_name":"Changyoung","full_name":"Kim, Changyoung","last_name":"Kim"},{"last_name":"Kang","first_name":"Woun","full_name":"Kang, Woun"}],"page":"235-238","extern":"1","_id":"9068","date_created":"2021-02-02T15:52:43Z","day":"01","doi":"10.1016/j.physb.2017.11.032","publication_status":"published","type":"journal_article","oa_version":"None","date_published":"2018-05-01T00:00:00Z","article_type":"original","publication_identifier":{"issn":["0921-4526"]},"date_updated":"2021-02-04T07:18:57Z","publisher":"Elsevier","year":"2018","title":"Pressure-induced metal–insulator transitions in chalcogenide NiS2-Se","language":[{"iso":"eng"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"05","article_processing_charge":"No","intvolume":"       536","abstract":[{"text":"We report the temperature-dependent resistivity ρ(T) of chalcogenide NiS2-xSex (x = 0.1) using hydrostatic pressure as a control parameter in the temperature range of 4–300 K. The insulating behavior of ρ(T) survives at low temperatures in the pressure regime below 7.5 kbar, whereas a clear insulator-to-metallic transition is observed above 7.5 kbar. Two types of magnetic transitions, from the paramagnetic (PM) to the antiferromagnetic (AFM) state and from the AFM state to the weak ferromagnetic (WF) state, were evaluated and confirmed by magnetization measurement. According to the temperature–pressure phase diagram, the WF phase survives up to 7.5 kbar, and the transition temperature of the WF transition decreases as the pressure increases, whereas the metal–insulator transition temperature increases up to 9.4 kbar. We analyzed the metallic behavior and proposed Fermi-liquid behavior of NiS1.9Se0.1.","lang":"eng"}],"publication":"Physica B: Condensed Matter","status":"public","citation":{"ista":"Hussain T, Oh M, Nauman M, Jo Y, Han G, Kim C, Kang W. 2018. Pressure-induced metal–insulator transitions in chalcogenide NiS2-Se. Physica B: Condensed Matter. 536, 235–238.","chicago":"Hussain, Tayyaba, Myeong-jun Oh, Muhammad Nauman, Younjung Jo, Garam Han, Changyoung Kim, and Woun Kang. “Pressure-Induced Metal–Insulator Transitions in Chalcogenide NiS2-Se.” <i>Physica B: Condensed Matter</i>. Elsevier, 2018. <a href=\"https://doi.org/10.1016/j.physb.2017.11.032\">https://doi.org/10.1016/j.physb.2017.11.032</a>.","apa":"Hussain, T., Oh, M., Nauman, M., Jo, Y., Han, G., Kim, C., &#38; Kang, W. (2018). Pressure-induced metal–insulator transitions in chalcogenide NiS2-Se. <i>Physica B: Condensed Matter</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.physb.2017.11.032\">https://doi.org/10.1016/j.physb.2017.11.032</a>","short":"T. Hussain, M. Oh, M. Nauman, Y. Jo, G. Han, C. Kim, W. Kang, Physica B: Condensed Matter 536 (2018) 235–238.","mla":"Hussain, Tayyaba, et al. “Pressure-Induced Metal–Insulator Transitions in Chalcogenide NiS2-Se.” <i>Physica B: Condensed Matter</i>, vol. 536, Elsevier, 2018, pp. 235–38, doi:<a href=\"https://doi.org/10.1016/j.physb.2017.11.032\">10.1016/j.physb.2017.11.032</a>.","ieee":"T. Hussain <i>et al.</i>, “Pressure-induced metal–insulator transitions in chalcogenide NiS2-Se,” <i>Physica B: Condensed Matter</i>, vol. 536. Elsevier, pp. 235–238, 2018.","ama":"Hussain T, Oh M, Nauman M, et al. Pressure-induced metal–insulator transitions in chalcogenide NiS2-Se. <i>Physica B: Condensed Matter</i>. 2018;536:235-238. doi:<a href=\"https://doi.org/10.1016/j.physb.2017.11.032\">10.1016/j.physb.2017.11.032</a>"},"quality_controlled":"1"},{"ddc":["581"],"project":[{"_id":"25716A02-B435-11E9-9278-68D0E5697425","name":"Polarity and subcellular dynamics in plants","grant_number":"282300","call_identifier":"FP7"}],"oa_version":"Published Version","isi":1,"type":"journal_article","doi":"10.1242/jcs.204198","file_date_updated":"2020-07-14T12:48:15Z","has_accepted_license":"1","publication_status":"published","publist_id":"6530","file":[{"creator":"dernst","date_created":"2019-04-12T08:46:32Z","content_type":"application/pdf","file_name":"2017_adamowski_PATELLINS_are.pdf","date_updated":"2020-07-14T12:48:15Z","file_id":"6299","relation":"main_file","access_level":"open_access","file_size":14925985,"checksum":"bf156c20a4f117b4b932370d54cbac8c"}],"month":"01","title":"PATELLINS are regulators of auxin mediated PIN1 relocation and plant development in Arabidopsis thaliana","pubrep_id":"988","date_published":"2018-01-29T00:00:00Z","date_updated":"2025-07-10T12:01:38Z","publication_identifier":{"issn":["0021-9533"]},"abstract":[{"text":"Coordinated cell polarization in developing tissues is a recurrent theme in multicellular organisms. In plants, a directional distribution of the plant hormone auxin is at the core of many developmental programs. A feedback regulation of auxin on the polarized localization of PIN auxin transporters in individual cells has been proposed as a self-organizing mechanism for coordinated tissue polarization, but the molecular mechanisms linking auxin signalling to PIN-dependent auxin transport remain unknown. We performed a microarray-based approach to find regulators of the auxin-induced PIN relocation in the Arabidopsis thaliana root. We identified a subset of a family of phosphatidylinositol transfer proteins (PITP), the PATELLINs (PATL). Here, we show that PATLs are expressed in partially overlapping cells types in different tissues going through mitosis or initiating differentiation programs. PATLs are plasma membrane-associated proteins accumulated in Arabidopsis embryos, primary roots, lateral root primordia, and developing stomata. Higher order patl mutants display reduced PIN1 repolarization in response to auxin, shorter root apical meristem, and drastic defects in embryo and seedling development. This suggests PATLs redundantly play a crucial role in polarity and patterning in Arabidopsis.","lang":"eng"}],"oa":1,"date_created":"2018-12-11T11:49:10Z","author":[{"first_name":"Ricardo","full_name":"Tejos, Ricardo","last_name":"Tejos"},{"last_name":"Rodríguez Furlán","first_name":"Cecilia","full_name":"Rodríguez Furlán, Cecilia"},{"orcid":"0000-0001-6463-5257","first_name":"Maciek","full_name":"Adamowski, Maciek","last_name":"Adamowski","id":"45F536D2-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Sauer","first_name":"Michael","full_name":"Sauer, Michael"},{"full_name":"Norambuena, Lorena","first_name":"Lorena","last_name":"Norambuena"},{"orcid":"0000-0002-8302-7596","first_name":"Jirí","full_name":"Friml, Jirí","id":"4159519E-F248-11E8-B48F-1D18A9856A87","last_name":"Friml"}],"_id":"913","volume":131,"day":"29","corr_author":"1","intvolume":"       131","article_processing_charge":"No","language":[{"iso":"eng"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2018","publisher":"Company of Biologists","article_number":"jcs.204198","issue":"2","status":"public","publication":"Journal of Cell Science","quality_controlled":"1","citation":{"short":"R. Tejos, C. Rodríguez Furlán, M. Adamowski, M. Sauer, L. Norambuena, J. Friml, Journal of Cell Science 131 (2018).","apa":"Tejos, R., Rodríguez Furlán, C., Adamowski, M., Sauer, M., Norambuena, L., &#38; Friml, J. (2018). PATELLINS are regulators of auxin mediated PIN1 relocation and plant development in Arabidopsis thaliana. <i>Journal of Cell Science</i>. Company of Biologists. <a href=\"https://doi.org/10.1242/jcs.204198\">https://doi.org/10.1242/jcs.204198</a>","chicago":"Tejos, Ricardo, Cecilia Rodríguez Furlán, Maciek Adamowski, Michael Sauer, Lorena Norambuena, and Jiří Friml. “PATELLINS Are Regulators of Auxin Mediated PIN1 Relocation and Plant Development in Arabidopsis Thaliana.” <i>Journal of Cell Science</i>. Company of Biologists, 2018. <a href=\"https://doi.org/10.1242/jcs.204198\">https://doi.org/10.1242/jcs.204198</a>.","ista":"Tejos R, Rodríguez Furlán C, Adamowski M, Sauer M, Norambuena L, Friml J. 2018. PATELLINS are regulators of auxin mediated PIN1 relocation and plant development in Arabidopsis thaliana. Journal of Cell Science. 131(2), jcs. 204198.","ama":"Tejos R, Rodríguez Furlán C, Adamowski M, Sauer M, Norambuena L, Friml J. PATELLINS are regulators of auxin mediated PIN1 relocation and plant development in Arabidopsis thaliana. <i>Journal of Cell Science</i>. 2018;131(2). doi:<a href=\"https://doi.org/10.1242/jcs.204198\">10.1242/jcs.204198</a>","ieee":"R. Tejos, C. Rodríguez Furlán, M. Adamowski, M. Sauer, L. Norambuena, and J. Friml, “PATELLINS are regulators of auxin mediated PIN1 relocation and plant development in Arabidopsis thaliana,” <i>Journal of Cell Science</i>, vol. 131, no. 2. Company of Biologists, 2018.","mla":"Tejos, Ricardo, et al. “PATELLINS Are Regulators of Auxin Mediated PIN1 Relocation and Plant Development in Arabidopsis Thaliana.” <i>Journal of Cell Science</i>, vol. 131, no. 2, jcs. 204198, Company of Biologists, 2018, doi:<a href=\"https://doi.org/10.1242/jcs.204198\">10.1242/jcs.204198</a>."},"external_id":{"isi":["000424842400019"]},"ec_funded":1,"department":[{"_id":"JiFr"}],"scopus_import":"1"},{"title":"Internal tide dissipation at topography: Triadic resonant instability equatorward and evanescent waves poleward of the critical latitude","date_updated":"2022-01-24T12:39:03Z","publication_identifier":{"issn":["2169-9275"]},"date_published":"2018-09-01T00:00:00Z","article_type":"original","month":"09","oa":1,"abstract":[{"lang":"eng","text":"Several studies have shown the existence of a critical latitude where the dissipation of internal tides is strongly enhanced. Internal tides are internal waves generated by barotropic tidal currents impinging rough topography at the seafloor. Their dissipation and concomitant diapycnal mixing are believed to be important for water masses and the large‐scale ocean circulation. The purpose of this study is to clarify the physical processes at the origin of this strong latitudinal dependence of tidal energy dissipation. We find that different mechanisms are involved equatorward and poleward of the critical latitude. Triadic resonant instabilities are responsible for the dissipation of internal tides equatorward of the critical latitude. In particular, a dominant triad involving the primary internal tide and near‐inertial waves is key. At the critical latitude, the peak of energy dissipation is explained by both increased instability growth rates, and smaller scales of secondary waves thus more prone to break and dissipate their energy. Surprisingly, poleward of the critical latitude, the generation of evanescent waves appears to be crucial. Triadic instabilities have been widely studied, but the transfer of energy to evanescent waves has received comparatively little attention. Our work suggests that the nonlinear transfer of energy from the internal tide to evanescent waves (corresponding to the 2f‐pump mechanism described by Young et al., 2008, https://doi.org/10.1017/S0022112008001742) is an efficient mechanism to dissipate internal tide energy near and poleward of the critical latitude. The theoretical results are confirmed in idealized high‐resolution numerical simulations of a barotropic M2 tide impinging sinusoidal topography in a linearly stratified fluid."}],"extern":"1","publication_status":"published","doi":"10.1029/2017jc013591","oa_version":"Published Version","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1029/2017JC013591"}],"type":"journal_article","publisher":"American Geophysical Union","year":"2018","issue":"9","article_processing_charge":"No","intvolume":"       123","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","language":[{"iso":"eng"}],"quality_controlled":"1","citation":{"chicago":"Richet, O., J.-M. Chomaz, and Caroline J Muller. “Internal Tide Dissipation at Topography: Triadic Resonant Instability Equatorward and Evanescent Waves Poleward of the Critical Latitude.” <i>Journal of Geophysical Research: Oceans</i>. American Geophysical Union, 2018. <a href=\"https://doi.org/10.1029/2017jc013591\">https://doi.org/10.1029/2017jc013591</a>.","ista":"Richet O, Chomaz J-M, Muller CJ. 2018. Internal tide dissipation at topography: Triadic resonant instability equatorward and evanescent waves poleward of the critical latitude. Journal of Geophysical Research: Oceans. 123(9), 6136–6155.","short":"O. Richet, J.-M. Chomaz, C.J. Muller, Journal of Geophysical Research: Oceans 123 (2018) 6136–6155.","apa":"Richet, O., Chomaz, J.-M., &#38; Muller, C. J. (2018). Internal tide dissipation at topography: Triadic resonant instability equatorward and evanescent waves poleward of the critical latitude. <i>Journal of Geophysical Research: Oceans</i>. American Geophysical Union. <a href=\"https://doi.org/10.1029/2017jc013591\">https://doi.org/10.1029/2017jc013591</a>","mla":"Richet, O., et al. “Internal Tide Dissipation at Topography: Triadic Resonant Instability Equatorward and Evanescent Waves Poleward of the Critical Latitude.” <i>Journal of Geophysical Research: Oceans</i>, vol. 123, no. 9, American Geophysical Union, 2018, pp. 6136–55, doi:<a href=\"https://doi.org/10.1029/2017jc013591\">10.1029/2017jc013591</a>.","ieee":"O. Richet, J.-M. Chomaz, and C. J. Muller, “Internal tide dissipation at topography: Triadic resonant instability equatorward and evanescent waves poleward of the critical latitude,” <i>Journal of Geophysical Research: Oceans</i>, vol. 123, no. 9. American Geophysical Union, pp. 6136–6155, 2018.","ama":"Richet O, Chomaz J-M, Muller CJ. Internal tide dissipation at topography: Triadic resonant instability equatorward and evanescent waves poleward of the critical latitude. <i>Journal of Geophysical Research: Oceans</i>. 2018;123(9):6136-6155. doi:<a href=\"https://doi.org/10.1029/2017jc013591\">10.1029/2017jc013591</a>"},"status":"public","publication":"Journal of Geophysical Research: Oceans","volume":123,"date_created":"2021-02-15T14:17:25Z","_id":"9134","author":[{"first_name":"O.","full_name":"Richet, O.","last_name":"Richet"},{"first_name":"J.-M.","full_name":"Chomaz, J.-M.","last_name":"Chomaz"},{"id":"f978ccb0-3f7f-11eb-b193-b0e2bd13182b","last_name":"Muller","full_name":"Muller, Caroline J","first_name":"Caroline J","orcid":"0000-0001-5836-5350"}],"page":"6136-6155","day":"01"},{"month":"03","article_type":"original","date_published":"2018-03-20T00:00:00Z","publication_identifier":{"issn":["0027-8424","1091-6490"]},"date_updated":"2022-01-24T12:39:49Z","title":"Acceleration of tropical cyclogenesis by self-aggregation feedbacks","abstract":[{"lang":"eng","text":"Idealized simulations of tropical moist convection have revealed that clouds can spontaneously clump together in a process called self-aggregation. This results in a state where a moist cloudy region with intense deep convection is surrounded by extremely dry subsiding air devoid of deep convection. Because of the idealized settings of the simulations where it was discovered, the relevance of self-aggregation to the real world is still debated. Here, we show that self-aggregation feedbacks play a leading-order role in the spontaneous genesis of tropical cyclones in cloud-resolving simulations. Those feedbacks accelerate the cyclogenesis process by a factor of 2, and the feedbacks contributing to the cyclone formation show qualitative and quantitative agreement with the self-aggregation process. Once the cyclone is formed, wind-induced surface heat exchange (WISHE) effects dominate, although we find that self-aggregation feedbacks have a small but nonnegligible contribution to the maintenance of the mature cyclone. Our results suggest that self-aggregation, and the framework developed for its study, can help shed more light into the physical processes leading to cyclogenesis and cyclone intensification. In particular, our results point out the importance of the longwave radiative cooling outside the cyclone."}],"oa":1,"keyword":["Multidisciplinary"],"extern":"1","type":"journal_article","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1073/pnas.1719967115"}],"oa_version":"Published Version","publication_status":"published","doi":"10.1073/pnas.1719967115","language":[{"iso":"eng"}],"user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","article_processing_charge":"No","intvolume":"       115","issue":"12","publisher":"Proceedings of the National Academy of Sciences","year":"2018","publication":"Proceedings of the National Academy of Sciences","status":"public","citation":{"apa":"Muller, C. J., &#38; Romps, D. M. (2018). Acceleration of tropical cyclogenesis by self-aggregation feedbacks. <i>Proceedings of the National Academy of Sciences</i>. Proceedings of the National Academy of Sciences. <a href=\"https://doi.org/10.1073/pnas.1719967115\">https://doi.org/10.1073/pnas.1719967115</a>","short":"C.J. Muller, D.M. Romps, Proceedings of the National Academy of Sciences 115 (2018) 2930–2935.","chicago":"Muller, Caroline J, and David M. Romps. “Acceleration of Tropical Cyclogenesis by Self-Aggregation Feedbacks.” <i>Proceedings of the National Academy of Sciences</i>. Proceedings of the National Academy of Sciences, 2018. <a href=\"https://doi.org/10.1073/pnas.1719967115\">https://doi.org/10.1073/pnas.1719967115</a>.","ista":"Muller CJ, Romps DM. 2018. Acceleration of tropical cyclogenesis by self-aggregation feedbacks. Proceedings of the National Academy of Sciences. 115(12), 2930–2935.","ama":"Muller CJ, Romps DM. Acceleration of tropical cyclogenesis by self-aggregation feedbacks. <i>Proceedings of the National Academy of Sciences</i>. 2018;115(12):2930-2935. doi:<a href=\"https://doi.org/10.1073/pnas.1719967115\">10.1073/pnas.1719967115</a>","ieee":"C. J. Muller and D. M. Romps, “Acceleration of tropical cyclogenesis by self-aggregation feedbacks,” <i>Proceedings of the National Academy of Sciences</i>, vol. 115, no. 12. Proceedings of the National Academy of Sciences, pp. 2930–2935, 2018.","mla":"Muller, Caroline J., and David M. Romps. “Acceleration of Tropical Cyclogenesis by Self-Aggregation Feedbacks.” <i>Proceedings of the National Academy of Sciences</i>, vol. 115, no. 12, Proceedings of the National Academy of Sciences, 2018, pp. 2930–35, doi:<a href=\"https://doi.org/10.1073/pnas.1719967115\">10.1073/pnas.1719967115</a>."},"quality_controlled":"1","author":[{"id":"f978ccb0-3f7f-11eb-b193-b0e2bd13182b","last_name":"Muller","orcid":"0000-0001-5836-5350","first_name":"Caroline J","full_name":"Muller, Caroline J"},{"last_name":"Romps","full_name":"Romps, David M.","first_name":"David M."}],"page":"2930-2935","_id":"9135","date_created":"2021-02-15T14:18:16Z","volume":115,"day":"20"},{"oa":1,"abstract":[{"lang":"eng","text":"In this study we investigate the scaling of precipitation extremes with temperature in the Mediterranean region by assessing against observations the present day and future regional climate simulations performed in the frame of the HyMeX and MED-CORDEX programs. Over the 1979–2008 period, despite differences in quantitative precipitation simulation across the various models, the change in precipitation extremes with respect to temperature is robust and consistent. The spatial variability of the temperature–precipitation extremes relationship displays a hook shape across the Mediterranean, with negative slope at high temperatures and a slope following Clausius–Clapeyron (CC)-scaling at low temperatures. The temperature at which the slope of the temperature–precipitation extreme relation sharply changes (or temperature break), ranges from about 20 °C in the western Mediterranean to <10 °C in Greece. In addition, this slope is always negative in the arid regions of the Mediterranean. The scaling of the simulated precipitation extremes is insensitive to ocean–atmosphere coupling, while it depends very weakly on the resolution at high temperatures for short precipitation accumulation times. In future climate scenario simulations covering the 2070–2100 period, the temperature break shifts to higher temperatures by a value which is on average the mean regional temperature change due to global warming. The slope of the simulated future temperature–precipitation extremes relationship is close to CC-scaling at temperatures below the temperature break, while at high temperatures, the negative slope is close, but somewhat flatter or steeper, than in the current climate depending on the model. Overall, models predict more intense precipitation extremes in the future. Adjusting the temperature–precipitation extremes relationship in the present climate using the CC law and the temperature shift in the future allows the recovery of the temperature–precipitation extremes relationship in the future climate. This implies negligible regional changes of relative humidity in the future despite the large warming and drying over the Mediterranean. This suggests that the Mediterranean Sea is the primary source of moisture which counteracts the drying and warming impacts on relative humidity in parts of the Mediterranean region."}],"date_updated":"2022-01-24T12:40:40Z","publication_identifier":{"issn":["0930-7575","1432-0894"]},"date_published":"2018-08-01T00:00:00Z","article_type":"original","title":"Scaling precipitation extremes with temperature in the Mediterranean: Past climate assessment and projection in anthropogenic scenarios","month":"08","publication_status":"published","doi":"10.1007/s00382-016-3083-x","type":"journal_article","main_file_link":[{"url":"https://doi.org/10.1007/s00382-016-3083-x","open_access":"1"}],"oa_version":"Published Version","extern":"1","keyword":["Atmospheric Science"],"quality_controlled":"1","citation":{"apa":"Drobinski, P., Silva, N. D., Panthou, G., Bastin, S., Muller, C. J., Ahrens, B., … Torma, C. Z. (2018). Scaling precipitation extremes with temperature in the Mediterranean: Past climate assessment and projection in anthropogenic scenarios. <i>Climate Dynamics</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s00382-016-3083-x\">https://doi.org/10.1007/s00382-016-3083-x</a>","short":"P. Drobinski, N.D. Silva, G. Panthou, S. Bastin, C.J. Muller, B. Ahrens, M. Borga, D. Conte, G. Fosser, F. Giorgi, I. Güttler, V. Kotroni, L. Li, E. Morin, B. Önol, P. Quintana-Segui, R. Romera, C.Z. Torma, Climate Dynamics 51 (2018) 1237–1257.","ista":"Drobinski P, Silva ND, Panthou G, Bastin S, Muller CJ, Ahrens B, Borga M, Conte D, Fosser G, Giorgi F, Güttler I, Kotroni V, Li L, Morin E, Önol B, Quintana-Segui P, Romera R, Torma CZ. 2018. Scaling precipitation extremes with temperature in the Mediterranean: Past climate assessment and projection in anthropogenic scenarios. Climate Dynamics. 51(3), 1237–1257.","chicago":"Drobinski, Philippe, Nicolas Da Silva, Gérémy Panthou, Sophie Bastin, Caroline J Muller, Bodo Ahrens, Marco Borga, et al. “Scaling Precipitation Extremes with Temperature in the Mediterranean: Past Climate Assessment and Projection in Anthropogenic Scenarios.” <i>Climate Dynamics</i>. Springer Nature, 2018. <a href=\"https://doi.org/10.1007/s00382-016-3083-x\">https://doi.org/10.1007/s00382-016-3083-x</a>.","ama":"Drobinski P, Silva ND, Panthou G, et al. Scaling precipitation extremes with temperature in the Mediterranean: Past climate assessment and projection in anthropogenic scenarios. <i>Climate Dynamics</i>. 2018;51(3):1237-1257. doi:<a href=\"https://doi.org/10.1007/s00382-016-3083-x\">10.1007/s00382-016-3083-x</a>","mla":"Drobinski, Philippe, et al. “Scaling Precipitation Extremes with Temperature in the Mediterranean: Past Climate Assessment and Projection in Anthropogenic Scenarios.” <i>Climate Dynamics</i>, vol. 51, no. 3, Springer Nature, 2018, pp. 1237–57, doi:<a href=\"https://doi.org/10.1007/s00382-016-3083-x\">10.1007/s00382-016-3083-x</a>.","ieee":"P. Drobinski <i>et al.</i>, “Scaling precipitation extremes with temperature in the Mediterranean: Past climate assessment and projection in anthropogenic scenarios,” <i>Climate Dynamics</i>, vol. 51, no. 3. Springer Nature, pp. 1237–1257, 2018."},"status":"public","publication":"Climate Dynamics","issue":"3","publisher":"Springer Nature","year":"2018","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","language":[{"iso":"eng"}],"intvolume":"        51","article_processing_charge":"No","day":"01","volume":51,"_id":"9136","page":"1237-1257","author":[{"last_name":"Drobinski","full_name":"Drobinski, Philippe","first_name":"Philippe"},{"last_name":"Silva","first_name":"Nicolas Da","full_name":"Silva, Nicolas Da"},{"last_name":"Panthou","first_name":"Gérémy","full_name":"Panthou, Gérémy"},{"last_name":"Bastin","full_name":"Bastin, Sophie","first_name":"Sophie"},{"orcid":"0000-0001-5836-5350","full_name":"Muller, Caroline J","first_name":"Caroline J","last_name":"Muller","id":"f978ccb0-3f7f-11eb-b193-b0e2bd13182b"},{"first_name":"Bodo","full_name":"Ahrens, Bodo","last_name":"Ahrens"},{"last_name":"Borga","full_name":"Borga, Marco","first_name":"Marco"},{"last_name":"Conte","first_name":"Dario","full_name":"Conte, Dario"},{"full_name":"Fosser, Giorgia","first_name":"Giorgia","last_name":"Fosser"},{"last_name":"Giorgi","full_name":"Giorgi, Filippo","first_name":"Filippo"},{"last_name":"Güttler","first_name":"Ivan","full_name":"Güttler, Ivan"},{"first_name":"Vassiliki","full_name":"Kotroni, Vassiliki","last_name":"Kotroni"},{"last_name":"Li","full_name":"Li, Laurent","first_name":"Laurent"},{"first_name":"Efrat","full_name":"Morin, Efrat","last_name":"Morin"},{"last_name":"Önol","first_name":"Bariş","full_name":"Önol, Bariş"},{"last_name":"Quintana-Segui","first_name":"Pere","full_name":"Quintana-Segui, Pere"},{"last_name":"Romera","full_name":"Romera, Raquel","first_name":"Raquel"},{"last_name":"Torma","full_name":"Torma, Csaba Zsolt","first_name":"Csaba Zsolt"}],"date_created":"2021-02-15T14:18:53Z"},{"day":"30","volume":4,"_id":"9229","page":"11","author":[{"full_name":"Danzl, Johann G","first_name":"Johann G","orcid":"0000-0001-8559-3973","id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87","last_name":"Danzl"}],"date_created":"2021-03-07T23:01:25Z","scopus_import":"1","department":[{"_id":"JoDa"}],"quality_controlled":"1","citation":{"mla":"Danzl, Johann G. “Diffraction-Unlimited Optical Imaging for Synaptic Physiology.” <i>Opera Medica et Physiologica</i>, vol. 4, no. S1, Lobachevsky State University of Nizhny Novgorod, 2018, p. 11, doi:<a href=\"https://doi.org/10.20388/omp2018.00s1.001\">10.20388/omp2018.00s1.001</a>.","ieee":"J. G. Danzl, “Diffraction-unlimited optical imaging for synaptic physiology,” <i>Opera Medica et Physiologica</i>, vol. 4, no. S1. Lobachevsky State University of Nizhny Novgorod, p. 11, 2018.","ama":"Danzl JG. Diffraction-unlimited optical imaging for synaptic physiology. <i>Opera Medica et Physiologica</i>. 2018;4(S1):11. doi:<a href=\"https://doi.org/10.20388/omp2018.00s1.001\">10.20388/omp2018.00s1.001</a>","chicago":"Danzl, Johann G. “Diffraction-Unlimited Optical Imaging for Synaptic Physiology.” <i>Opera Medica et Physiologica</i>. Lobachevsky State University of Nizhny Novgorod, 2018. <a href=\"https://doi.org/10.20388/omp2018.00s1.001\">https://doi.org/10.20388/omp2018.00s1.001</a>.","ista":"Danzl JG. 2018. Diffraction-unlimited optical imaging for synaptic physiology. Opera Medica et Physiologica. 4(S1), 11.","apa":"Danzl, J. G. (2018). Diffraction-unlimited optical imaging for synaptic physiology. <i>Opera Medica et Physiologica</i>. Lobachevsky State University of Nizhny Novgorod. <a href=\"https://doi.org/10.20388/omp2018.00s1.001\">https://doi.org/10.20388/omp2018.00s1.001</a>","short":"J.G. Danzl, Opera Medica et Physiologica 4 (2018) 11."},"status":"public","publication":"Opera Medica et Physiologica","issue":"S1","year":"2018","publisher":"Lobachevsky State University of Nizhny Novgorod","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","language":[{"iso":"eng"}],"article_processing_charge":"No","intvolume":"         4","publication_status":"published","doi":"10.20388/omp2018.00s1.001","main_file_link":[{"open_access":"1","url":"http://operamedphys.org/content/molecular-and-cellular-neuroscience"}],"type":"journal_article","oa_version":"Published Version","alternative_title":["Molecular and cellular neuroscience"],"ddc":["570"],"oa":1,"publication_identifier":{"issn":["2500-2287"],"eissn":["2500-2295"]},"date_updated":"2026-06-18T19:43:22Z","date_published":"2018-06-30T00:00:00Z","article_type":"letter_note","title":"Diffraction-unlimited optical imaging for synaptic physiology","month":"06"},{"day":"15","tmp":{"image":"/images/cc_by_nc_nd.png","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","short":"CC BY-NC-ND (4.0)"},"volume":115,"related_material":{"link":[{"url":"https://doi.org/10.1101/187674 ","relation":"earlier_version"}]},"date_created":"2021-06-07T06:11:28Z","page":"E4720-E4729","author":[{"last_name":"Frost","first_name":"Jennifer M.","full_name":"Frost, Jennifer M."},{"last_name":"Kim","full_name":"Kim, M. Yvonne","first_name":"M. Yvonne"},{"full_name":"Park, Guen Tae","first_name":"Guen Tae","last_name":"Park"},{"last_name":"Hsieh","full_name":"Hsieh, Ping-Hung","first_name":"Ping-Hung"},{"first_name":"Miyuki","full_name":"Nakamura, Miyuki","last_name":"Nakamura"},{"last_name":"Lin","first_name":"Samuel J. H.","full_name":"Lin, Samuel J. H."},{"full_name":"Yoo, Hyunjin","first_name":"Hyunjin","last_name":"Yoo"},{"first_name":"Jaemyung","full_name":"Choi, Jaemyung","last_name":"Choi"},{"last_name":"Ikeda","first_name":"Yoko","full_name":"Ikeda, Yoko"},{"first_name":"Tetsu","full_name":"Kinoshita, Tetsu","last_name":"Kinoshita"},{"first_name":"Yeonhee","full_name":"Choi, Yeonhee","last_name":"Choi"},{"id":"6973db13-dd5f-11ea-814e-b3e5455e9ed1","last_name":"Zilberman","orcid":"0000-0002-0123-8649","first_name":"Daniel","full_name":"Zilberman, Daniel"},{"first_name":"Robert L.","full_name":"Fischer, Robert L.","last_name":"Fischer"}],"_id":"9471","department":[{"_id":"DaZi"}],"scopus_import":"1","status":"public","publication":"Proceedings of the National Academy of Sciences","quality_controlled":"1","citation":{"apa":"Frost, J. M., Kim, M. Y., Park, G. T., Hsieh, P.-H., Nakamura, M., Lin, S. J. H., … Fischer, R. L. (2018). FACT complex is required for DNA demethylation at heterochromatin during reproduction in Arabidopsis. <i>Proceedings of the National Academy of Sciences</i>. National Academy of Sciences. <a href=\"https://doi.org/10.1073/pnas.1713333115\">https://doi.org/10.1073/pnas.1713333115</a>","short":"J.M. Frost, M.Y. Kim, G.T. Park, P.-H. Hsieh, M. Nakamura, S.J.H. Lin, H. Yoo, J. Choi, Y. Ikeda, T. Kinoshita, Y. Choi, D. Zilberman, R.L. Fischer, Proceedings of the National Academy of Sciences 115 (2018) E4720–E4729.","chicago":"Frost, Jennifer M., M. Yvonne Kim, Guen Tae Park, Ping-Hung Hsieh, Miyuki Nakamura, Samuel J. H. Lin, Hyunjin Yoo, et al. “FACT Complex Is Required for DNA Demethylation at Heterochromatin during Reproduction in Arabidopsis.” <i>Proceedings of the National Academy of Sciences</i>. National Academy of Sciences, 2018. <a href=\"https://doi.org/10.1073/pnas.1713333115\">https://doi.org/10.1073/pnas.1713333115</a>.","ista":"Frost JM, Kim MY, Park GT, Hsieh P-H, Nakamura M, Lin SJH, Yoo H, Choi J, Ikeda Y, Kinoshita T, Choi Y, Zilberman D, Fischer RL. 2018. FACT complex is required for DNA demethylation at heterochromatin during reproduction in Arabidopsis. Proceedings of the National Academy of Sciences. 115(20), E4720–E4729.","ama":"Frost JM, Kim MY, Park GT, et al. FACT complex is required for DNA demethylation at heterochromatin during reproduction in Arabidopsis. <i>Proceedings of the National Academy of Sciences</i>. 2018;115(20):E4720-E4729. doi:<a href=\"https://doi.org/10.1073/pnas.1713333115\">10.1073/pnas.1713333115</a>","ieee":"J. M. Frost <i>et al.</i>, “FACT complex is required for DNA demethylation at heterochromatin during reproduction in Arabidopsis,” <i>Proceedings of the National Academy of Sciences</i>, vol. 115, no. 20. National Academy of Sciences, pp. E4720–E4729, 2018.","mla":"Frost, Jennifer M., et al. “FACT Complex Is Required for DNA Demethylation at Heterochromatin during Reproduction in Arabidopsis.” <i>Proceedings of the National Academy of Sciences</i>, vol. 115, no. 20, National Academy of Sciences, 2018, pp. E4720–29, doi:<a href=\"https://doi.org/10.1073/pnas.1713333115\">10.1073/pnas.1713333115</a>."},"external_id":{"pmid":["29712855"]},"publisher":"National Academy of Sciences","year":"2018","issue":"20","article_processing_charge":"No","intvolume":"       115","language":[{"iso":"eng"}],"user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","publication_status":"published","file_date_updated":"2021-06-07T06:16:38Z","has_accepted_license":"1","doi":"10.1073/pnas.1713333115","oa_version":"Published Version","type":"journal_article","ddc":["580"],"keyword":["Multidisciplinary"],"extern":"1","abstract":[{"text":"The DEMETER (DME) DNA glycosylase catalyzes genome-wide DNA demethylation and is required for endosperm genomic imprinting and embryo viability. Targets of DME-mediated DNA demethylation reside in small, euchromatic, AT-rich transposons and at the boundaries of large transposons, but how DME interacts with these diverse chromatin states is unknown. The STRUCTURE SPECIFIC RECOGNITION PROTEIN 1 (SSRP1) subunit of the chromatin remodeler FACT (facilitates chromatin transactions), was previously shown to be involved in the DME-dependent regulation of genomic imprinting in Arabidopsis endosperm. Therefore, to investigate the interaction between DME and chromatin, we focused on the activity of the two FACT subunits, SSRP1 and SUPPRESSOR of TY16 (SPT16), during reproduction in Arabidopsis. We found that FACT colocalizes with nuclear DME in vivo, and that DME has two classes of target sites, the first being euchromatic and accessible to DME, but the second, representing over half of DME targets, requiring the action of FACT for DME-mediated DNA demethylation genome-wide. Our results show that the FACT-dependent DME targets are GC-rich heterochromatin domains with high nucleosome occupancy enriched with H3K9me2 and H3K27me1. Further, we demonstrate that heterochromatin-associated linker histone H1 specifically mediates the requirement for FACT at a subset of DME-target loci. Overall, our results demonstrate that FACT is required for DME targeting by facilitating its access to heterochromatin.","lang":"eng"}],"oa":1,"pmid":1,"license":"https://creativecommons.org/licenses/by-nc-nd/4.0/","title":"FACT complex is required for DNA demethylation at heterochromatin during reproduction in Arabidopsis","date_published":"2018-05-15T00:00:00Z","article_type":"original","publication_identifier":{"issn":["0027-8424"],"eissn":["1091-6490"]},"date_updated":"2021-12-14T07:53:40Z","file":[{"file_id":"9472","content_type":"application/pdf","date_updated":"2021-06-07T06:16:38Z","file_name":"2018_PNAS_Frost.pdf","date_created":"2021-06-07T06:16:38Z","creator":"asandaue","relation":"main_file","access_level":"open_access","file_size":3045260,"checksum":"810260dc0e3cc3033e15c19ad0dc123e","success":1}],"month":"05"},{"external_id":{"arxiv":["1801.09278"]},"citation":{"short":"V. Lee, N. James, S.R. Waitukaitis, H. Jaeger, Physical Review Materials 2 (2018).","apa":"Lee, V., James, N., Waitukaitis, S. R., &#38; Jaeger, H. (2018). Collisional charging of individual submillimeter particles: Using ultrasonic levitation to initiate and track charge transfer. <i>Physical Review Materials</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevMaterials.2.035602\">https://doi.org/10.1103/PhysRevMaterials.2.035602</a>","ista":"Lee V, James N, Waitukaitis SR, Jaeger H. 2018. Collisional charging of individual submillimeter particles: Using ultrasonic levitation to initiate and track charge transfer. Physical Review Materials. 2(3), 035602.","chicago":"Lee, Victor, Nicole James, Scott R Waitukaitis, and Heinrich Jaeger. “Collisional Charging of Individual Submillimeter Particles: Using Ultrasonic Levitation to Initiate and Track Charge Transfer.” <i>Physical Review Materials</i>. American Physical Society, 2018. <a href=\"https://doi.org/10.1103/PhysRevMaterials.2.035602\">https://doi.org/10.1103/PhysRevMaterials.2.035602</a>.","ama":"Lee V, James N, Waitukaitis SR, Jaeger H. Collisional charging of individual submillimeter particles: Using ultrasonic levitation to initiate and track charge transfer. <i>Physical Review Materials</i>. 2018;2(3). doi:<a href=\"https://doi.org/10.1103/PhysRevMaterials.2.035602\">10.1103/PhysRevMaterials.2.035602</a>","ieee":"V. Lee, N. James, S. R. Waitukaitis, and H. Jaeger, “Collisional charging of individual submillimeter particles: Using ultrasonic levitation to initiate and track charge transfer,” <i>Physical Review Materials</i>, vol. 2, no. 3. American Physical Society, 2018.","mla":"Lee, Victor, et al. “Collisional Charging of Individual Submillimeter Particles: Using Ultrasonic Levitation to Initiate and Track Charge Transfer.” <i>Physical Review Materials</i>, vol. 2, no. 3, 035602, American Physical Society, 2018, doi:<a href=\"https://doi.org/10.1103/PhysRevMaterials.2.035602\">10.1103/PhysRevMaterials.2.035602</a>."},"quality_controlled":"1","publication":"Physical Review Materials","status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","language":[{"iso":"eng"}],"intvolume":"         2","issue":"3","article_number":"035602","year":"2018","publisher":"American Physical Society","day":"29","_id":"95","author":[{"last_name":"Lee","first_name":"Victor","full_name":"Lee, Victor"},{"first_name":"Nicole","full_name":"James, Nicole","last_name":"James"},{"orcid":"0000-0002-2299-3176","first_name":"Scott R","full_name":"Waitukaitis, Scott R","last_name":"Waitukaitis","id":"3A1FFC16-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Jaeger, Heinrich","first_name":"Heinrich","last_name":"Jaeger"}],"date_created":"2018-12-11T11:44:36Z","volume":2,"oa":1,"abstract":[{"text":"Electrostatic charging of insulating fine particles can be responsible for numerous phenomena ranging from lightning in volcanic plumes to dust explosions. However, even basic aspects of how fine particles become charged are still unclear. Studying particle charging is challenging because it usually involves the complexities associated with many-particle collisions. To address these issues, we introduce a method based on acoustic levitation, which makes it possible to initiate sequences of repeated collisions of a single submillimeter particle with a flat plate, and to precisely measure the particle charge in situ after each collision. We show that collisional charge transfer between insulators is dependent on the hydrophobicity of the contacting surfaces. We use glass, which we modify by attaching nonpolar molecules to the particle, the plate, or both. We find that hydrophilic surfaces develop significant positive charges after contacting hydrophobic surfaces. Moreover, we demonstrate that charging between a hydrophilic and a hydrophobic surface is suppressed in an acidic environment and enhanced in a basic one. Application of an electric field during each collision is found to modify the charge transfer, again depending on surface hydrophobicity. We discuss these results within the context of contact charging due to ion transfer, and we show that they lend strong support to OH− ions as the charge carriers.","lang":"eng"}],"month":"03","date_updated":"2021-01-12T08:22:09Z","date_published":"2018-03-29T00:00:00Z","title":"Collisional charging of individual submillimeter particles: Using ultrasonic levitation to initiate and track charge transfer","type":"journal_article","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1801.09278"}],"oa_version":"Preprint","arxiv":1,"doi":"10.1103/PhysRevMaterials.2.035602","publication_status":"published","publist_id":"7959","extern":"1"},{"arxiv":1,"doi":"10.1002/rsa.20815","publication_status":"published","type":"journal_article","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1708.07746"}],"oa_version":"Preprint","extern":"1","oa":1,"abstract":[{"text":"Let D(n,p) be the random directed graph on n vertices where each of the n(n-1) possible arcs is present independently with probability p. A celebrated result of Frieze shows that if p≥(logn+ω(1))/n then D(n,p) typically has a directed Hamilton cycle, and this is best possible. In this paper, we obtain a strengthening of this result, showing that under the same condition, the number of directed Hamilton cycles in D(n,p) is typically n!(p(1+o(1)))n. We also prove a hitting-time version of this statement, showing that in the random directed graph process, as soon as every vertex has in-/out-degrees at least 1, there are typically n!(logn/n(1+o(1)))n directed Hamilton cycles.","lang":"eng"}],"date_updated":"2023-02-23T14:01:03Z","publication_identifier":{"issn":["1042-9832"],"eissn":["1098-2418"]},"date_published":"2018-12-01T00:00:00Z","article_type":"original","title":"Counting Hamilton cycles in sparse random directed graphs","month":"12","day":"01","volume":53,"_id":"9565","page":"592-603","author":[{"last_name":"Ferber","first_name":"Asaf","full_name":"Ferber, Asaf"},{"orcid":"0000-0002-4003-7567","full_name":"Kwan, Matthew Alan","first_name":"Matthew Alan","last_name":"Kwan","id":"5fca0887-a1db-11eb-95d1-ca9d5e0453b3"},{"full_name":"Sudakov, Benny","first_name":"Benny","last_name":"Sudakov"}],"date_created":"2021-06-18T12:06:28Z","scopus_import":"1","external_id":{"arxiv":["1708.07746"]},"quality_controlled":"1","citation":{"ista":"Ferber A, Kwan MA, Sudakov B. 2018. Counting Hamilton cycles in sparse random directed graphs. Random Structures and Algorithms. 53(4), 592–603.","chicago":"Ferber, Asaf, Matthew Alan Kwan, and Benny Sudakov. “Counting Hamilton Cycles in Sparse Random Directed Graphs.” <i>Random Structures and Algorithms</i>. Wiley, 2018. <a href=\"https://doi.org/10.1002/rsa.20815\">https://doi.org/10.1002/rsa.20815</a>.","short":"A. Ferber, M.A. Kwan, B. Sudakov, Random Structures and Algorithms 53 (2018) 592–603.","apa":"Ferber, A., Kwan, M. A., &#38; Sudakov, B. (2018). Counting Hamilton cycles in sparse random directed graphs. <i>Random Structures and Algorithms</i>. Wiley. <a href=\"https://doi.org/10.1002/rsa.20815\">https://doi.org/10.1002/rsa.20815</a>","mla":"Ferber, Asaf, et al. “Counting Hamilton Cycles in Sparse Random Directed Graphs.” <i>Random Structures and Algorithms</i>, vol. 53, no. 4, Wiley, 2018, pp. 592–603, doi:<a href=\"https://doi.org/10.1002/rsa.20815\">10.1002/rsa.20815</a>.","ieee":"A. Ferber, M. A. Kwan, and B. Sudakov, “Counting Hamilton cycles in sparse random directed graphs,” <i>Random Structures and Algorithms</i>, vol. 53, no. 4. Wiley, pp. 592–603, 2018.","ama":"Ferber A, Kwan MA, Sudakov B. Counting Hamilton cycles in sparse random directed graphs. <i>Random Structures and Algorithms</i>. 2018;53(4):592-603. doi:<a href=\"https://doi.org/10.1002/rsa.20815\">10.1002/rsa.20815</a>"},"status":"public","publication":"Random Structures and Algorithms","issue":"4","publisher":"Wiley","year":"2018","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","language":[{"iso":"eng"}],"article_processing_charge":"No","intvolume":"        53"},{"extern":"1","arxiv":1,"publication_status":"published","doi":"10.1002/rsa.20814","main_file_link":[{"url":"https://arxiv.org/abs/1708.01054","open_access":"1"}],"type":"journal_article","oa_version":"Preprint","date_updated":"2023-02-23T14:01:07Z","publication_identifier":{"issn":["1042-9832"],"eissn":["1098-2418"]},"date_published":"2018-12-01T00:00:00Z","article_type":"original","title":"The random k‐matching‐free process","month":"12","oa":1,"abstract":[{"lang":"eng","text":"Let P be a graph property which is preserved by removal of edges, and consider the random graph process that starts with the empty n-vertex graph and then adds edges one-by-one, each chosen uniformly at random subject to the constraint that P is not violated. These types of random processes have been the subject of extensive research over the last 20 years, having striking applications in extremal combinatorics, and leading to the discovery of important probabilistic tools. In this paper we consider the k-matching-free process, where P is the property of not containing a matching of size k. We are able to analyse the behaviour of this process for a wide range of values of k; in particular we prove that if k=o(n) or if n−2k=o(n−−√/logn) then this process is likely to terminate in a k-matching-free graph with the maximum possible number of edges, as characterised by Erdős and Gallai. We also show that these bounds on k are essentially best possible, and we make a first step towards understanding the behaviour of the process in the intermediate regime."}],"volume":53,"_id":"9567","page":"692-716","author":[{"first_name":"Michael","full_name":"Krivelevich, Michael","last_name":"Krivelevich"},{"orcid":"0000-0002-4003-7567","full_name":"Kwan, Matthew Alan","first_name":"Matthew Alan","id":"5fca0887-a1db-11eb-95d1-ca9d5e0453b3","last_name":"Kwan"},{"last_name":"Loh","first_name":"Po‐Shen","full_name":"Loh, Po‐Shen"},{"last_name":"Sudakov","full_name":"Sudakov, Benny","first_name":"Benny"}],"date_created":"2021-06-18T12:37:40Z","day":"01","issue":"4","publisher":"Wiley","year":"2018","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","language":[{"iso":"eng"}],"intvolume":"        53","article_processing_charge":"No","scopus_import":"1","external_id":{"arxiv":["1708.01054"]},"citation":{"short":"M. Krivelevich, M.A. Kwan, P. Loh, B. Sudakov, Random Structures and Algorithms 53 (2018) 692–716.","apa":"Krivelevich, M., Kwan, M. A., Loh, P., &#38; Sudakov, B. (2018). The random k‐matching‐free process. <i>Random Structures and Algorithms</i>. Wiley. <a href=\"https://doi.org/10.1002/rsa.20814\">https://doi.org/10.1002/rsa.20814</a>","chicago":"Krivelevich, Michael, Matthew Alan Kwan, Po‐Shen Loh, and Benny Sudakov. “The Random K‐matching‐free Process.” <i>Random Structures and Algorithms</i>. Wiley, 2018. <a href=\"https://doi.org/10.1002/rsa.20814\">https://doi.org/10.1002/rsa.20814</a>.","ista":"Krivelevich M, Kwan MA, Loh P, Sudakov B. 2018. The random k‐matching‐free process. Random Structures and Algorithms. 53(4), 692–716.","ama":"Krivelevich M, Kwan MA, Loh P, Sudakov B. The random k‐matching‐free process. <i>Random Structures and Algorithms</i>. 2018;53(4):692-716. doi:<a href=\"https://doi.org/10.1002/rsa.20814\">10.1002/rsa.20814</a>","mla":"Krivelevich, Michael, et al. “The Random K‐matching‐free Process.” <i>Random Structures and Algorithms</i>, vol. 53, no. 4, Wiley, 2018, pp. 692–716, doi:<a href=\"https://doi.org/10.1002/rsa.20814\">10.1002/rsa.20814</a>.","ieee":"M. Krivelevich, M. A. Kwan, P. Loh, and B. Sudakov, “The random k‐matching‐free process,” <i>Random Structures and Algorithms</i>, vol. 53, no. 4. Wiley, pp. 692–716, 2018."},"quality_controlled":"1","publication":"Random Structures and Algorithms","status":"public"},{"month":"03","title":"Intercalates and discrepancy in random Latin squares","publication_identifier":{"issn":["1042-9832"],"eissn":["1098-2418"]},"date_updated":"2023-02-23T14:01:09Z","article_type":"original","date_published":"2018-03-01T00:00:00Z","oa":1,"abstract":[{"lang":"eng","text":"An intercalate in a Latin square is a 2×2 Latin subsquare. Let N be the number of intercalates in a uniformly random n×n Latin square. We prove that asymptotically almost surely N≥(1−o(1))n2/4, and that EN≤(1+o(1))n2/2 (therefore asymptotically almost surely N≤fn2 for any f→∞). This significantly improves the previous best lower and upper bounds. We also give an upper tail bound for the number of intercalates in two fixed rows of a random Latin square. In addition, we discuss a problem of Linial and Luria on low-discrepancy Latin squares."}],"extern":"1","oa_version":"Preprint","main_file_link":[{"url":"https://arxiv.org/abs/1607.04981","open_access":"1"}],"type":"journal_article","doi":"10.1002/rsa.20742","publication_status":"published","arxiv":1,"article_processing_charge":"No","intvolume":"        52","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","language":[{"iso":"eng"}],"year":"2018","publisher":"Wiley","issue":"2","citation":{"ieee":"M. A. Kwan and B. Sudakov, “Intercalates and discrepancy in random Latin squares,” <i>Random Structures and Algorithms</i>, vol. 52, no. 2. Wiley, pp. 181–196, 2018.","mla":"Kwan, Matthew Alan, and Benny Sudakov. “Intercalates and Discrepancy in Random Latin Squares.” <i>Random Structures and Algorithms</i>, vol. 52, no. 2, Wiley, 2018, pp. 181–96, doi:<a href=\"https://doi.org/10.1002/rsa.20742\">10.1002/rsa.20742</a>.","ama":"Kwan MA, Sudakov B. Intercalates and discrepancy in random Latin squares. <i>Random Structures and Algorithms</i>. 2018;52(2):181-196. doi:<a href=\"https://doi.org/10.1002/rsa.20742\">10.1002/rsa.20742</a>","ista":"Kwan MA, Sudakov B. 2018. Intercalates and discrepancy in random Latin squares. Random Structures and Algorithms. 52(2), 181–196.","chicago":"Kwan, Matthew Alan, and Benny Sudakov. “Intercalates and Discrepancy in Random Latin Squares.” <i>Random Structures and Algorithms</i>. Wiley, 2018. <a href=\"https://doi.org/10.1002/rsa.20742\">https://doi.org/10.1002/rsa.20742</a>.","short":"M.A. Kwan, B. Sudakov, Random Structures and Algorithms 52 (2018) 181–196.","apa":"Kwan, M. A., &#38; Sudakov, B. (2018). Intercalates and discrepancy in random Latin squares. <i>Random Structures and Algorithms</i>. Wiley. <a href=\"https://doi.org/10.1002/rsa.20742\">https://doi.org/10.1002/rsa.20742</a>"},"quality_controlled":"1","publication":"Random Structures and Algorithms","status":"public","external_id":{"arxiv":["1607.04981"]},"scopus_import":"1","date_created":"2021-06-18T12:47:25Z","_id":"9568","author":[{"orcid":"0000-0002-4003-7567","full_name":"Kwan, Matthew Alan","first_name":"Matthew Alan","last_name":"Kwan","id":"5fca0887-a1db-11eb-95d1-ca9d5e0453b3"},{"last_name":"Sudakov","first_name":"Benny","full_name":"Sudakov, Benny"}],"page":"181-196","volume":52,"day":"01"},{"publication_identifier":{"issn":["0097-3165"]},"date_updated":"2023-02-23T14:01:55Z","article_type":"original","date_published":"2018-05-01T00:00:00Z","title":"Non-trivially intersecting multi-part families","month":"05","oa":1,"abstract":[{"lang":"eng","text":"We say a family of sets is intersecting if any two of its sets intersect, and we say it is trivially intersecting if there is an element which appears in every set of the family. In this paper we study the maximum size of a non-trivially intersecting family in a natural “multi-part” setting. Here the ground set is divided into parts, and one considers families of sets whose intersection with each part is of a prescribed size. Our work is motivated by classical results in the single-part setting due to Erdős, Ko and Rado, and Hilton and Milner, and by a theorem of Frankl concerning intersecting families in this multi-part setting. In the case where the part sizes are sufficiently large we determine the maximum size of a non-trivially intersecting multi-part family, disproving a conjecture of Alon and Katona."}],"extern":"1","arxiv":1,"doi":"10.1016/j.jcta.2017.12.001","publication_status":"published","type":"journal_article","main_file_link":[{"url":"https://arxiv.org/abs/1703.09946","open_access":"1"}],"oa_version":"Preprint","publisher":"Elsevier","year":"2018","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","language":[{"iso":"eng"}],"intvolume":"       156","article_processing_charge":"No","scopus_import":"1","external_id":{"arxiv":["1703.09946"]},"quality_controlled":"1","citation":{"mla":"Kwan, Matthew Alan, et al. “Non-Trivially Intersecting Multi-Part Families.” <i>Journal of Combinatorial Theory Series A</i>, vol. 156, Elsevier, 2018, pp. 44–60, doi:<a href=\"https://doi.org/10.1016/j.jcta.2017.12.001\">10.1016/j.jcta.2017.12.001</a>.","ieee":"M. A. Kwan, B. Sudakov, and P. Vieira, “Non-trivially intersecting multi-part families,” <i>Journal of Combinatorial Theory Series A</i>, vol. 156. Elsevier, pp. 44–60, 2018.","ama":"Kwan MA, Sudakov B, Vieira P. Non-trivially intersecting multi-part families. <i>Journal of Combinatorial Theory Series A</i>. 2018;156:44-60. doi:<a href=\"https://doi.org/10.1016/j.jcta.2017.12.001\">10.1016/j.jcta.2017.12.001</a>","ista":"Kwan MA, Sudakov B, Vieira P. 2018. Non-trivially intersecting multi-part families. Journal of Combinatorial Theory Series A. 156, 44–60.","chicago":"Kwan, Matthew Alan, Benny Sudakov, and Pedro Vieira. “Non-Trivially Intersecting Multi-Part Families.” <i>Journal of Combinatorial Theory Series A</i>. Elsevier, 2018. <a href=\"https://doi.org/10.1016/j.jcta.2017.12.001\">https://doi.org/10.1016/j.jcta.2017.12.001</a>.","apa":"Kwan, M. A., Sudakov, B., &#38; Vieira, P. (2018). Non-trivially intersecting multi-part families. <i>Journal of Combinatorial Theory Series A</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.jcta.2017.12.001\">https://doi.org/10.1016/j.jcta.2017.12.001</a>","short":"M.A. Kwan, B. Sudakov, P. Vieira, Journal of Combinatorial Theory Series A 156 (2018) 44–60."},"publication":"Journal of Combinatorial Theory Series A","status":"public","volume":156,"_id":"9587","page":"44-60","author":[{"id":"5fca0887-a1db-11eb-95d1-ca9d5e0453b3","last_name":"Kwan","first_name":"Matthew Alan","full_name":"Kwan, Matthew Alan","orcid":"0000-0002-4003-7567"},{"last_name":"Sudakov","first_name":"Benny","full_name":"Sudakov, Benny"},{"last_name":"Vieira","first_name":"Pedro","full_name":"Vieira, Pedro"}],"date_created":"2021-06-22T11:42:48Z","day":"01"},{"quality_controlled":"1","citation":{"chicago":"Cheng, Bingqing, and Michele Ceriotti. “Communication: Computing the Tolman Length for Solid-Liquid Interfaces.” <i>The Journal of Chemical Physics</i>. AIP Publishing, 2018. <a href=\"https://doi.org/10.1063/1.5038396\">https://doi.org/10.1063/1.5038396</a>.","ista":"Cheng B, Ceriotti M. 2018. Communication: Computing the Tolman length for solid-liquid interfaces. The Journal of Chemical Physics. 148(23), 231102.","apa":"Cheng, B., &#38; Ceriotti, M. (2018). Communication: Computing the Tolman length for solid-liquid interfaces. <i>The Journal of Chemical Physics</i>. AIP Publishing. <a href=\"https://doi.org/10.1063/1.5038396\">https://doi.org/10.1063/1.5038396</a>","short":"B. Cheng, M. Ceriotti, The Journal of Chemical Physics 148 (2018).","mla":"Cheng, Bingqing, and Michele Ceriotti. “Communication: Computing the Tolman Length for Solid-Liquid Interfaces.” <i>The Journal of Chemical Physics</i>, vol. 148, no. 23, 231102, AIP Publishing, 2018, doi:<a href=\"https://doi.org/10.1063/1.5038396\">10.1063/1.5038396</a>.","ieee":"B. Cheng and M. Ceriotti, “Communication: Computing the Tolman length for solid-liquid interfaces,” <i>The Journal of Chemical Physics</i>, vol. 148, no. 23. AIP Publishing, 2018.","ama":"Cheng B, Ceriotti M. Communication: Computing the Tolman length for solid-liquid interfaces. <i>The Journal of Chemical Physics</i>. 2018;148(23). doi:<a href=\"https://doi.org/10.1063/1.5038396\">10.1063/1.5038396</a>"},"status":"public","publication":"The Journal of Chemical Physics","external_id":{"pmid":["29935495"],"arxiv":["1803.09140"]},"scopus_import":"1","intvolume":"       148","article_processing_charge":"No","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","language":[{"iso":"eng"}],"publisher":"AIP Publishing","year":"2018","issue":"23","article_number":"231102","day":"21","date_created":"2021-07-15T07:51:42Z","_id":"9659","author":[{"orcid":"0000-0002-3584-9632","first_name":"Bingqing","full_name":"Cheng, Bingqing","id":"cbe3cda4-d82c-11eb-8dc7-8ff94289fcc9","last_name":"Cheng"},{"last_name":"Ceriotti","full_name":"Ceriotti, Michele","first_name":"Michele"}],"volume":148,"oa":1,"abstract":[{"lang":"eng","text":"The curvature dependence of interfacial free energy, which is crucial in quantitatively predicting nucleation kinetics and the stability of bubbles and droplets, is quantified by the Tolman length δ. For solid-liquid interfaces, however, δ has never been computed directly due to various theoretical and practical challenges. Here we perform a direct evaluation of the Tolman length from atomistic simulations of a solid-liquid planar interface in out-of-equilibrium conditions, by first computing the surface tension from the amplitude of thermal capillary fluctuations of a localized version of the Gibbs dividing surface and by then calculating how much the surface energy changes when it is defined relative to the equimolar dividing surface. We computed δ for a model potential, and found a good agreement with the values indirectly inferred from nucleation simulations. The agreement not only validates our approach but also suggests that the nucleation free energy of the system can be perfectly described using classical nucleation theory if the Tolman length is taken into account."}],"month":"06","title":"Communication: Computing the Tolman length for solid-liquid interfaces","pmid":1,"date_updated":"2023-02-23T14:03:57Z","publication_identifier":{"eissn":["1089-7690"],"issn":["0021-9606"]},"article_type":"original","date_published":"2018-06-21T00:00:00Z","oa_version":"Submitted Version","type":"journal_article","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1063/1.5038396"}],"publication_status":"published","doi":"10.1063/1.5038396","arxiv":1,"extern":"1"}]