[{"oa_version":"Published Version","language":[{"iso":"eng"}],"quality_controlled":"1","month":"02","corr_author":"1","day":"01","doi":"10.1051/0004-6361/202451541","department":[{"_id":"LiBu"}],"publication_status":"published","scopus_import":"1","acknowledgement":"We thank the referee for very constructive and detailed comments that led to an improvement of the quality of our study. L.B. and L.B. gratefully acknowledge support from the European Research Council (ERC) under the Horizon Europe programme (Calcifer; Starting Grant agreement N°101165631). S. Mathis acknowledges support from the PLATO CNES grant at CEA/DAp and from the European Research Council through HORIZON ERC SyG Grant 4D-STAR 101071505. While partially funded by the European Union, views and opinions expressed are however those of the author only and do not necessarily reflect those of the European Union or the European Research Council. Neither the European Union nor the granting authority can be held responsible for them. L. Barrault thanks the members of the asteroseismology group of the Institute of Astronomy (IvS) of KU Leuven, in particular T. Van Reeth, M. Vanrespaille, Z. Guo and C. Aerts, for their warm welcome during a work visit in Spring 2024, and very insightful input on the present study. The authors thank also the members of the Asteroseismology and Stellar Dynamics group of the Institute of Science and Technology Austria (ISTA) for very useful discussion: K. M. Smith, L. Einramhof, S. Torres and A. Cristea.","status":"public","file":[{"content_type":"application/pdf","relation":"main_file","checksum":"568a5e5951f20483663df145a780fc3d","success":1,"access_level":"open_access","date_updated":"2025-03-04T09:57:03Z","file_size":7438476,"creator":"dernst","date_created":"2025-03-04T09:57:03Z","file_id":"19288","file_name":"2025_AstronomyAstrophysics_Barrault.pdf"}],"citation":{"ama":"Barrault L, Mathis S, Bugnet LA. Constraining differential rotation in γ Doradus stars from the properties of inertial dips. <i>Astronomy &#38; Astrophysics</i>. 2025;694. doi:<a href=\"https://doi.org/10.1051/0004-6361/202451541\">10.1051/0004-6361/202451541</a>","apa":"Barrault, L., Mathis, S., &#38; Bugnet, L. A. (2025). Constraining differential rotation in γ Doradus stars from the properties of inertial dips. <i>Astronomy &#38; Astrophysics</i>. EDP Sciences. <a href=\"https://doi.org/10.1051/0004-6361/202451541\">https://doi.org/10.1051/0004-6361/202451541</a>","ieee":"L. Barrault, S. Mathis, and L. A. Bugnet, “Constraining differential rotation in γ Doradus stars from the properties of inertial dips,” <i>Astronomy &#38; Astrophysics</i>, vol. 694. EDP Sciences, 2025.","ista":"Barrault L, Mathis S, Bugnet LA. 2025. Constraining differential rotation in γ Doradus stars from the properties of inertial dips. Astronomy &#38; Astrophysics. 694, A225.","mla":"Barrault, Lucas, et al. “Constraining Differential Rotation in γ Doradus Stars from the Properties of Inertial Dips.” <i>Astronomy &#38; Astrophysics</i>, vol. 694, A225, EDP Sciences, 2025, doi:<a href=\"https://doi.org/10.1051/0004-6361/202451541\">10.1051/0004-6361/202451541</a>.","chicago":"Barrault, Lucas, S. Mathis, and Lisa Annabelle Bugnet. “Constraining Differential Rotation in γ Doradus Stars from the Properties of Inertial Dips.” <i>Astronomy &#38; Astrophysics</i>. EDP Sciences, 2025. <a href=\"https://doi.org/10.1051/0004-6361/202451541\">https://doi.org/10.1051/0004-6361/202451541</a>.","short":"L. Barrault, S. Mathis, L.A. Bugnet, Astronomy &#38; Astrophysics 694 (2025)."},"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"has_accepted_license":"1","oa":1,"OA_place":"publisher","article_type":"original","OA_type":"diamond","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"Constraining differential rotation in γ Doradus stars from the properties of inertial dips","file_date_updated":"2025-03-04T09:57:03Z","date_updated":"2026-02-16T12:09:14Z","type":"journal_article","abstract":[{"lang":"eng","text":"Context. The presence of dips in the gravity mode period spacing versus period diagram of γ Doradus stars is now well established thanks to recent asteroseismic studies. Such Lorentzian-shaped inertial dips arise from the interaction of gravito-inertial modes in the radiative envelope of intermediate-mass main sequence stars with pure inertial modes in their convective core, and allow us to study stellar internal properties. This window onto stellar internal dynamics is extremely valuable in the context of the understanding of angular-momentum transport inside stars, as it allows us to probe rotation in their core.\r\n\r\nAims. We investigate the signature and the detectability of a differential rotation between the convective core and the near-core region inside γ Doradus stars from the properties of inertial dips.\r\n\r\nMethods. We studied the coupling between gravito-inertial modes in the radiative zone and pure inertial modes in the convective core in the sub-inertial regime, allowing for a two-zone differential rotation from the two sides of the core-to-envelope boundary. We solved the coupling equation numerically and matched the result to an analytical derivation of the Lorentzian dip properties. We then used typical values of measured near-core rotation and buoyancy travel time to infer ranges of parameters for which differential core to near-core rotation would be detectable in current Kepler data.\r\n\r\nResults. We show that increasing the convective core rotation with respect to the near-core rotation leads to a shift of the period of the observed dip to lower periods. In addition, the dip gets deeper and thinner as the convective core rotation increases. We demonstrate that such a signature is detectable in Kepler data, given appropriate dip-parameter ranges and near-core structural properties.\r\n\r\nConclusions. Studying the dip properties in asteroseismic data thus allows us to access core to near-core radial differential rotation and to better understand the transport of angular momentum at convective–radiative interfaces in intermediate-mass main sequence stars."}],"publication_identifier":{"issn":["0004-6361"],"eissn":["1432-0746"]},"date_created":"2025-03-02T23:01:53Z","publication":"Astronomy & Astrophysics","article_processing_charge":"Yes","date_published":"2025-02-01T00:00:00Z","article_number":"A225","year":"2025","publisher":"EDP Sciences","project":[{"_id":"914d8549-16d5-11f0-9cad-bbe6324c93a9","grant_number":"101165631","name":"Unveiling the mysteries of stellar dynamics: a pioneering journey in magnetoasteroseismology"}],"ddc":["520"],"isi":1,"author":[{"first_name":"Lucas","last_name":"Barrault","id":"4471a8fd-32c1-11ee-a9a4-fb670d398f64","full_name":"Barrault, Lucas"},{"first_name":"S.","full_name":"Mathis, S.","last_name":"Mathis"},{"id":"d9edb345-f866-11ec-9b37-d119b5234501","full_name":"Bugnet, Lisa Annabelle","last_name":"Bugnet","first_name":"Lisa Annabelle","orcid":"0000-0003-0142-4000"}],"external_id":{"isi":["001424452400025"]},"_id":"19283","volume":694,"intvolume":"       694"},{"date_published":"2025-02-12T00:00:00Z","article_processing_charge":"No","publisher":"EDP Sciences","ddc":["520"],"year":"2025","article_number":"A178","_id":"19284","external_id":{"arxiv":["2409.17241"],"isi":["001420194600001"]},"author":[{"last_name":"Covelo-Paz","full_name":"Covelo-Paz, Alba","first_name":"Alba"},{"last_name":"Giovinazzo","full_name":"Giovinazzo, Emma","first_name":"Emma"},{"first_name":"Pascal A.","last_name":"Oesch","full_name":"Oesch, Pascal A."},{"full_name":"Meyer, Romain A.","last_name":"Meyer","first_name":"Romain A."},{"full_name":"Weibel, Andrea","last_name":"Weibel","first_name":"Andrea"},{"full_name":"Brammer, Gabriel","last_name":"Brammer","first_name":"Gabriel"},{"first_name":"Yoshinobu","full_name":"Fudamoto, Yoshinobu","last_name":"Fudamoto"},{"last_name":"Kerutt","full_name":"Kerutt, Josephine","first_name":"Josephine"},{"first_name":"Jamie","last_name":"Lin","full_name":"Lin, Jamie"},{"first_name":"Jasleen","full_name":"Matharu, Jasleen","last_name":"Matharu"},{"full_name":"Naidu, Rohan P.","last_name":"Naidu","first_name":"Rohan P."},{"last_name":"Velichko","full_name":"Velichko, Anna","first_name":"Anna"},{"first_name":"Victoria","full_name":"Bollo, Victoria","last_name":"Bollo"},{"last_name":"Bouwens","full_name":"Bouwens, Rychard","first_name":"Rychard"},{"first_name":"John","last_name":"Chisholm","full_name":"Chisholm, John"},{"first_name":"Garth D.","full_name":"Illingworth, Garth D.","last_name":"Illingworth"},{"orcid":"0000-0001-5346-6048","first_name":"Ivan","full_name":"Kramarenko, Ivan","id":"9a9394cb-3200-11ee-973b-f5ba2a8b16e4","last_name":"Kramarenko"},{"full_name":"Magee, Daniel","last_name":"Magee","first_name":"Daniel"},{"full_name":"Maseda, Michael","last_name":"Maseda","first_name":"Michael"},{"full_name":"Matthee, Jorryt J","id":"7439a258-f3c0-11ec-9501-9df22fe06720","last_name":"Matthee","orcid":"0000-0003-2871-127X","first_name":"Jorryt J"},{"last_name":"Nelson","full_name":"Nelson, Erica","first_name":"Erica"},{"first_name":"Naveen","last_name":"Reddy","full_name":"Reddy, Naveen"},{"last_name":"Schaerer","full_name":"Schaerer, Daniel","first_name":"Daniel"},{"full_name":"Stefanon, Mauro","last_name":"Stefanon","first_name":"Mauro"},{"first_name":"Mengyuan","full_name":"Xiao, Mengyuan","last_name":"Xiao"}],"isi":1,"intvolume":"       694","volume":694,"related_material":{"link":[{"url":" https://github.com/astroalba/fresco","relation":"software"}]},"month":"02","department":[{"_id":"JoMa"}],"publication_status":"published","day":"12","doi":"10.1051/0004-6361/202452363","arxiv":1,"oa_version":"Published Version","quality_controlled":"1","language":[{"iso":"eng"}],"status":"public","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"file":[{"content_type":"application/pdf","relation":"main_file","checksum":"b1e74644a0cd37550e9a553f8675c93f","success":1,"access_level":"open_access","date_updated":"2025-03-04T09:29:01Z","file_size":1865856,"creator":"dernst","date_created":"2025-03-04T09:29:01Z","file_id":"19285","file_name":"2025_AstronomyAstrophysics_CoveloPaz.pdf"}],"citation":{"short":"A. Covelo-Paz, E. Giovinazzo, P.A. Oesch, R.A. Meyer, A. Weibel, G. Brammer, Y. Fudamoto, J. Kerutt, J. Lin, J. Matharu, R.P. Naidu, A. Velichko, V. Bollo, R. Bouwens, J. Chisholm, G.D. Illingworth, I. Kramarenko, D. Magee, M. Maseda, J.J. Matthee, E. Nelson, N. Reddy, D. Schaerer, M. Stefanon, M. Xiao, Astronomy &#38; Astrophysics 694 (2025).","chicago":"Covelo-Paz, Alba, Emma Giovinazzo, Pascal A. Oesch, Romain A. Meyer, Andrea Weibel, Gabriel Brammer, Yoshinobu Fudamoto, et al. “An Hα View of Galaxy Buildup in the First 2 Gyr: Luminosity Functions at z ∼ 4−6.5 from NIRCam/Grism Spectroscopy.” <i>Astronomy &#38; Astrophysics</i>. EDP Sciences, 2025. <a href=\"https://doi.org/10.1051/0004-6361/202452363\">https://doi.org/10.1051/0004-6361/202452363</a>.","mla":"Covelo-Paz, Alba, et al. “An Hα View of Galaxy Buildup in the First 2 Gyr: Luminosity Functions at z ∼ 4−6.5 from NIRCam/Grism Spectroscopy.” <i>Astronomy &#38; Astrophysics</i>, vol. 694, A178, EDP Sciences, 2025, doi:<a href=\"https://doi.org/10.1051/0004-6361/202452363\">10.1051/0004-6361/202452363</a>.","ista":"Covelo-Paz A, Giovinazzo E, Oesch PA, Meyer RA, Weibel A, Brammer G, Fudamoto Y, Kerutt J, Lin J, Matharu J, Naidu RP, Velichko A, Bollo V, Bouwens R, Chisholm J, Illingworth GD, Kramarenko I, Magee D, Maseda M, Matthee JJ, Nelson E, Reddy N, Schaerer D, Stefanon M, Xiao M. 2025. An Hα view of galaxy buildup in the first 2 Gyr: Luminosity functions at z ∼ 4−6.5 from NIRCam/grism spectroscopy. Astronomy &#38; Astrophysics. 694, A178.","ieee":"A. Covelo-Paz <i>et al.</i>, “An Hα view of galaxy buildup in the first 2 Gyr: Luminosity functions at z ∼ 4−6.5 from NIRCam/grism spectroscopy,” <i>Astronomy &#38; Astrophysics</i>, vol. 694. EDP Sciences, 2025.","ama":"Covelo-Paz A, Giovinazzo E, Oesch PA, et al. An Hα view of galaxy buildup in the first 2 Gyr: Luminosity functions at z ∼ 4−6.5 from NIRCam/grism spectroscopy. <i>Astronomy &#38; Astrophysics</i>. 2025;694. doi:<a href=\"https://doi.org/10.1051/0004-6361/202452363\">10.1051/0004-6361/202452363</a>","apa":"Covelo-Paz, A., Giovinazzo, E., Oesch, P. A., Meyer, R. A., Weibel, A., Brammer, G., … Xiao, M. (2025). An Hα view of galaxy buildup in the first 2 Gyr: Luminosity functions at z ∼ 4−6.5 from NIRCam/grism spectroscopy. <i>Astronomy &#38; Astrophysics</i>. EDP Sciences. <a href=\"https://doi.org/10.1051/0004-6361/202452363\">https://doi.org/10.1051/0004-6361/202452363</a>"},"scopus_import":"1","acknowledgement":"This work is based on observations made with the NASA/ESA/CSA James Webb Space Telescope. The data were obtained from the Mikulski Archive for Space Telescopes at the Space Telescope Science Institute, which is operated by the Association of Universities for Research in Astronomy, Inc., under NASA contract NAS 5-03127 for JWST. These observations are associated with program Nos. 1895 and 3577. The authors sincerely thank the CONGRESS team (PIs: Egami & Sun) for developing their observing program with a zero-exclusive-access period. We thank Aswin Vijayan and Harley Katz for their help in analyzing the simulation data from FLARES and SPHINX. This work has received funding from the Swiss State Secretariat for Education, Research, and Innovation (SERI) under contract number MB22.00072, as well as from the Swiss National Science Foundation (SNSF) through project grant 200020_207349. The Cosmic Dawn Center (DAWN) is funded by the Danish National Research Foundation under grant DNRF140. Support for program #1895 was provided by NASA through a grant from the Space Telescope Science Institute, which is operated by the Association of Universities for Research in Astronomy, Inc., under NASA contract NAS 5-03127. Support for this work for RPN was provided by NASA through the NASA Hubble Fellowship grant HST-HF2-51515.001-A awarded by the Space Telescope Science Institute, which is operated by the Association of Universities for Research in Astronomy, Incorporated, under NASA contract NAS5-26555. MS acknowledges support from the European Research Commission Consolidator Grant 101088789 (SFEER), from the CIDEGENT/2021/059 grant by Generalitat Valenciana, and from project PID2023-149420NB-I00 funded by MICIU/AEI/10.13039/501100011033 and by ERDF/EU.","article_type":"original","OA_place":"publisher","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"An Hα view of galaxy buildup in the first 2 Gyr: Luminosity functions at z ∼ 4−6.5 from NIRCam/grism spectroscopy","OA_type":"diamond","oa":1,"has_accepted_license":"1","abstract":[{"lang":"eng","text":"The Hα nebular emission line is an optimal tracer for recent star formation in galaxies. With the advent of JWST, this line has recently become observable at z > 3 for the first time. We present a catalog of 1050 Hα emitters at 3.7 < z < 6.7 in the GOODS fields obtained from a blind search in JWST NIRCam/grism data. We made use of the FRESCO survey’s 124 arcmin2 of observations in GOODS-North and GOODS-South with the F444W filter, probing Hα at 4.9 < z < 6.7, and the CONGRESS survey’s 62 arcmin2 of observations in GOODS-North with F356W, probing Hα at 3.8 < z < 5.1. We found an overdensity with 98 sources at z ∼ 4.4 in GOODS-N, and confirmed previously reported overdensities at z ∼ 5.2 in GOODS-N and at z ∼ 5.4 and z ∼ 5.9 in GOODS-S. We computed the observed Hα luminosity functions (LFs) in three bins centered at z ∼ 4.45, 5.30, and 6.15, which are the first such measurements at z > 3 obtained based purely on spectroscopic data, robustly tracing galaxy star formation rates (SFRs) beyond the peak of the cosmic star formation history. We compared our results with theoretical predictions from three different simulations and found good agreement at z ∼ 4 − 6. The UV LFs of this spectroscopically confirmed sample are in good agreement with pre-JWST measurements obtained with photometrically selected objects. Finally, we derived SFR functions and integrated them to compute the evolution of the cosmic SFR densities across z ∼ 4 − 6, finding values in good agreement with recent UV estimates from Lyman-break galaxies, which imply a continuous decrease in SFR density by a factor of three over z ∼ 4 to z ∼ 6. Our work shows the power of NIRCam grism observations to efficiently provide new tests for early galaxy formation models based on emission line statistics."}],"date_created":"2025-03-02T23:01:54Z","publication":"Astronomy & Astrophysics","publication_identifier":{"eissn":["1432-0746"],"issn":["0004-6361"]},"file_date_updated":"2025-03-04T09:29:01Z","type":"journal_article","date_updated":"2026-02-16T12:08:59Z"},{"year":"2025","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"ddc":["570"],"file":[{"access_level":"open_access","success":1,"checksum":"11a5bab307a4e1e1598a1577d8a2fbb5","relation":"main_file","content_type":"application/vnd.openxmlformats-officedocument.spreadsheetml.sheet","file_name":"Data1.xlsx","file_id":"19295","date_created":"2025-03-04T13:08:52Z","creator":"dernst","file_size":269054,"date_updated":"2025-03-04T13:08:52Z"},{"success":1,"access_level":"open_access","content_type":"application/vnd.openxmlformats-officedocument.spreadsheetml.sheet","relation":"main_file","checksum":"3b057894322639f0c1e11fb2e84173e6","date_created":"2025-03-04T13:08:52Z","file_id":"19296","file_name":"Data2.xlsx","date_updated":"2025-03-04T13:08:52Z","file_size":87143,"creator":"dernst"},{"content_type":"application/vnd.openxmlformats-officedocument.spreadsheetml.sheet","checksum":"a551e1b79a138bb97ab96979aa475b3c","relation":"main_file","access_level":"open_access","success":1,"date_updated":"2025-03-04T13:08:52Z","creator":"dernst","file_size":129101,"file_id":"19297","date_created":"2025-03-04T13:08:52Z","file_name":"Data3.xlsx"},{"file_name":"Data4.xlsx","file_id":"19298","date_created":"2025-03-04T13:08:52Z","creator":"dernst","file_size":86243,"date_updated":"2025-03-04T13:08:52Z","access_level":"open_access","success":1,"checksum":"d6909c9bf111f859058082b1a2f970c4","relation":"main_file","content_type":"application/vnd.openxmlformats-officedocument.spreadsheetml.sheet"},{"date_updated":"2025-03-04T13:08:52Z","file_size":26049,"creator":"dernst","date_created":"2025-03-04T13:08:52Z","file_id":"19299","file_name":"Data5.xlsx","content_type":"application/vnd.openxmlformats-officedocument.spreadsheetml.sheet","relation":"main_file","checksum":"e5725a3a118a3f06846104906c8792c7","success":1,"access_level":"open_access"},{"content_type":"application/vnd.openxmlformats-officedocument.spreadsheetml.sheet","relation":"main_file","checksum":"16763c127049f14bd587dc885677dce1","success":1,"access_level":"open_access","date_updated":"2025-03-04T13:08:52Z","file_size":7327253,"creator":"dernst","file_id":"19300","date_created":"2025-03-04T13:08:52Z","file_name":"RawData_2_3.xlsx"},{"file_name":"Readme.txt","file_id":"19301","date_created":"2025-03-05T07:39:38Z","creator":"dernst","file_size":606,"date_updated":"2025-03-05T07:39:38Z","access_level":"open_access","success":1,"checksum":"2f3e1a368b4e3abc46bf37e02724f0f4","relation":"main_file","content_type":"text/plain"}],"citation":{"ieee":"K. Jain, R. Hauschild, O. Bochkareva, R. Römhild, G. Tkačik, and C. C. Guet, “Data for ‘Pulsatile basal gene expression as a fitness determinant in bacteria.’” Institute of Science and Technology Austria, 2025.","apa":"Jain, K., Hauschild, R., Bochkareva, O., Römhild, R., Tkačik, G., &#38; Guet, C. C. (2025). Data for “Pulsatile basal gene expression as a fitness determinant in bacteria.” Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:19294\">https://doi.org/10.15479/AT:ISTA:19294</a>","ama":"Jain K, Hauschild R, Bochkareva O, Römhild R, Tkačik G, Guet CC. Data for “Pulsatile basal gene expression as a fitness determinant in bacteria.” 2025. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:19294\">10.15479/AT:ISTA:19294</a>","short":"K. Jain, R. Hauschild, O. Bochkareva, R. Römhild, G. Tkačik, C.C. Guet, (2025).","mla":"Jain, Kirti, et al. <i>Data for “Pulsatile Basal Gene Expression as a Fitness Determinant in Bacteria.”</i> Institute of Science and Technology Austria, 2025, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:19294\">10.15479/AT:ISTA:19294</a>.","chicago":"Jain, Kirti, Robert Hauschild, Olga Bochkareva, Roderich Römhild, Gašper Tkačik, and Calin C Guet. “Data for ‘Pulsatile Basal Gene Expression as a Fitness Determinant in Bacteria.’” Institute of Science and Technology Austria, 2025. <a href=\"https://doi.org/10.15479/AT:ISTA:19294\">https://doi.org/10.15479/AT:ISTA:19294</a>.","ista":"Jain K, Hauschild R, Bochkareva O, Römhild R, Tkačik G, Guet CC. 2025. Data for ‘Pulsatile basal gene expression as a fitness determinant in bacteria’, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:19294\">10.15479/AT:ISTA:19294</a>."},"status":"public","publisher":"Institute of Science and Technology Austria","oa_version":"Published Version","article_processing_charge":"No","department":[{"_id":"CaGu"},{"_id":"Bio"},{"_id":"FyKo"},{"_id":"GaTk"}],"doi":"10.15479/AT:ISTA:19294","day":"04","related_material":{"record":[{"relation":"used_in_publication","id":"19626","status":"public"}]},"month":"03","date_published":"2025-03-04T00:00:00Z","corr_author":"1","type":"research_data","date_updated":"2026-05-20T08:33:07Z","file_date_updated":"2025-03-05T07:39:38Z","date_created":"2025-03-04T13:27:21Z","abstract":[{"text":"Active regulation of gene expression, orchestrated by complex interactions of activators and repressors at promoters, controls the fate of organisms. In contrast, basal expression at uninduced promoters is considered to be a dynamically inert mode of non-functional “promoter leakiness”, merely a byproduct of transcriptional regulation. Here, we investigate the basal expression mode of the mar operon, the main regulator of intrinsic multiple antibiotic resistance in Escherichia coli, and link its dynamic properties to the non-canonical, yet highly conserved start codon of marR across Enterobacteriaceae. Real-time, single-cell measurements across tens of generations reveal that basal expression consists of rare stochastic gene expression pulses, which maximize variability in wildtype and, surprisingly, transiently accelerate cellular elongation rates. Competition experiments show that basal expression confers fitness advantages to wildtype across several transitions between exponential and stationary growth by shortening lag times. The dynamically rich basal expression of the mar operon has likely been evolutionarily maintained for its role in growth homeostasis of Enterobacteria within the gut environment, thereby allowing other ancillary gene regulatory roles to evolve, e.g. control of costly-to-induce multi-drug efflux pumps. Understanding the complex selection forces governing genetic systems involved in intrinsic multi-drug resistance is crucial for effective public health measures.","lang":"eng"}],"has_accepted_license":"1","oa":1,"author":[{"orcid":"0000-0002-3809-0449","first_name":"Kirti","full_name":"Jain, Kirti","id":"330F0278-F248-11E8-B48F-1D18A9856A87","last_name":"Jain"},{"id":"4E01D6B4-F248-11E8-B48F-1D18A9856A87","full_name":"Hauschild, Robert","last_name":"Hauschild","first_name":"Robert","orcid":"0000-0001-9843-3522"},{"last_name":"Bochkareva","id":"C4558D3C-6102-11E9-A62E-F418E6697425","full_name":"Bochkareva, Olga","first_name":"Olga","orcid":"0000-0003-1006-6639"},{"id":"68E56E44-62B0-11EA-B963-444F3DDC885E","full_name":"Römhild, Roderich","last_name":"Römhild","first_name":"Roderich","orcid":"0000-0001-9480-5261"},{"first_name":"Gašper","orcid":"0000-0002-6699-1455","id":"3D494DCA-F248-11E8-B48F-1D18A9856A87","full_name":"Tkačik, Gašper","last_name":"Tkačik"},{"first_name":"Calin C","orcid":"0000-0001-6220-2052","last_name":"Guet","id":"47F8433E-F248-11E8-B48F-1D18A9856A87","full_name":"Guet, Calin C"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"Data for \"Pulsatile basal gene expression as a fitness determinant in bacteria\"","_id":"19294","OA_type":"gold","OA_place":"repository"},{"has_accepted_license":"1","oa":1,"OA_place":"publisher","article_type":"original","OA_type":"hybrid","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"Averages of multiplicative functions along equidistributed sequences","file_date_updated":"2025-12-30T08:05:42Z","PlanS_conform":"1","date_updated":"2025-12-30T08:06:16Z","type":"journal_article","abstract":[{"text":"For a general family of non-negative functions matching upper and lower bounds are established for their average over the values of any equidistributed sequence.","lang":"eng"}],"publication_identifier":{"issn":["0022-314X"]},"date_created":"2025-03-09T23:01:26Z","publication":"Journal of Number Theory","quality_controlled":"1","oa_version":"Published Version","language":[{"iso":"eng"}],"corr_author":"1","month":"08","doi":"10.1016/j.jnt.2025.01.005","day":"01","department":[{"_id":"TiBr"}],"publication_status":"published","scopus_import":"1","status":"public","file":[{"date_updated":"2025-12-30T08:05:42Z","file_size":685204,"creator":"dernst","file_id":"20889","date_created":"2025-12-30T08:05:42Z","file_name":"2025_JourNumberTheory_Chan.pdf","content_type":"application/pdf","relation":"main_file","checksum":"752c407eb186d391380b10a7505f66cf","success":1,"access_level":"open_access"}],"citation":{"ieee":"S. Chan, P. Koymans, C. Pagano, and E. Sofos, “Averages of multiplicative functions along equidistributed sequences,” <i>Journal of Number Theory</i>, vol. 273. Elsevier, pp. 1–36, 2025.","apa":"Chan, S., Koymans, P., Pagano, C., &#38; Sofos, E. (2025). Averages of multiplicative functions along equidistributed sequences. <i>Journal of Number Theory</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.jnt.2025.01.005\">https://doi.org/10.1016/j.jnt.2025.01.005</a>","ama":"Chan S, Koymans P, Pagano C, Sofos E. Averages of multiplicative functions along equidistributed sequences. <i>Journal of Number Theory</i>. 2025;273:1-36. doi:<a href=\"https://doi.org/10.1016/j.jnt.2025.01.005\">10.1016/j.jnt.2025.01.005</a>","short":"S. Chan, P. Koymans, C. Pagano, E. Sofos, Journal of Number Theory 273 (2025) 1–36.","chicago":"Chan, Stephanie, Peter Koymans, Carlo Pagano, and Efthymios Sofos. “Averages of Multiplicative Functions along Equidistributed Sequences.” <i>Journal of Number Theory</i>. Elsevier, 2025. <a href=\"https://doi.org/10.1016/j.jnt.2025.01.005\">https://doi.org/10.1016/j.jnt.2025.01.005</a>.","mla":"Chan, Stephanie, et al. “Averages of Multiplicative Functions along Equidistributed Sequences.” <i>Journal of Number Theory</i>, vol. 273, Elsevier, 2025, pp. 1–36, doi:<a href=\"https://doi.org/10.1016/j.jnt.2025.01.005\">10.1016/j.jnt.2025.01.005</a>.","ista":"Chan S, Koymans P, Pagano C, Sofos E. 2025. Averages of multiplicative functions along equidistributed sequences. Journal of Number Theory. 273, 1–36."},"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"author":[{"id":"c4c0afc8-9262-11ed-9231-d8b0bc743af1","full_name":"Chan, Yik Tung","last_name":"Chan","first_name":"Yik Tung","orcid":"0000-0001-8467-4106"},{"first_name":"Peter","full_name":"Koymans, Peter","last_name":"Koymans"},{"last_name":"Pagano","full_name":"Pagano, Carlo","first_name":"Carlo"},{"first_name":"Efthymios","last_name":"Sofos","full_name":"Sofos, Efthymios"}],"isi":1,"external_id":{"isi":["001444208500001"]},"_id":"19363","volume":273,"intvolume":"       273","article_processing_charge":"Yes (in subscription journal)","page":"1-36","date_published":"2025-08-01T00:00:00Z","year":"2025","publisher":"Elsevier","ddc":["510"]},{"date_published":"2025-02-20T00:00:00Z","pmid":1,"page":"845-850","article_processing_charge":"No","publisher":"AAAS","project":[{"name":"HighTE: The Werner Siemens Laboratory for the High Throughput Discovery of Semiconductors for Waste Heat Recovery","_id":"9B8F7476-BA93-11EA-9121-9846C619BF3A"}],"year":"2025","_id":"19364","external_id":{"pmid":["39977506"],"isi":["001514422600026"]},"issue":"6736","isi":1,"author":[{"id":"12ab8624-4c8a-11ec-9e11-e1ac2438f22f","full_name":"Xu, Shengduo","last_name":"Xu","first_name":"Shengduo"},{"first_name":"Sharona","last_name":"Horta","full_name":"Horta, Sharona","id":"03a7e858-01b1-11ec-8b71-99ae6c4a05bc"},{"last_name":"Lawal","id":"5bdaf946-5355-11ee-ae5a-8061700bd605","full_name":"Lawal, Abayomi Q","first_name":"Abayomi Q"},{"last_name":"Maji","full_name":"Maji, Krishnendu","id":"76bc9e9f-ba0b-11ee-8184-90edabd17a58","first_name":"Krishnendu"},{"full_name":"Lorion, Magali","id":"bc07ac4d-142e-11eb-a9d5-d72db792859d","last_name":"Lorion","first_name":"Magali"},{"last_name":"Ibáñez","id":"43C61214-F248-11E8-B48F-1D18A9856A87","full_name":"Ibáñez, Maria","first_name":"Maria","orcid":"0000-0001-5013-2843"}],"intvolume":"       387","volume":387,"doi":"10.1126/science.ads0426","day":"20","publication_status":"published","department":[{"_id":"MaIb"}],"corr_author":"1","month":"02","related_material":{"link":[{"description":"News on ISTA website","relation":"press_release","url":"https://ista.ac.at/en/news/cooling-materials-out-of-the-3d-printer/"}]},"language":[{"iso":"eng"}],"quality_controlled":"1","oa_version":"None","acknowledged_ssus":[{"_id":"EM-Fac"},{"_id":"LifeSc"},{"_id":"M-Shop"},{"_id":"NanoFab"}],"citation":{"ama":"Xu S, Horta S, Lawal AQ, Maji K, Lorion M, Ibáñez M. Interfacial bonding enhances thermoelectric cooling in 3D-printed materials. <i>Science</i>. 2025;387(6736):845-850. doi:<a href=\"https://doi.org/10.1126/science.ads0426\">10.1126/science.ads0426</a>","apa":"Xu, S., Horta, S., Lawal, A. Q., Maji, K., Lorion, M., &#38; Ibáñez, M. (2025). Interfacial bonding enhances thermoelectric cooling in 3D-printed materials. <i>Science</i>. AAAS. <a href=\"https://doi.org/10.1126/science.ads0426\">https://doi.org/10.1126/science.ads0426</a>","ieee":"S. Xu, S. Horta, A. Q. Lawal, K. Maji, M. Lorion, and M. Ibáñez, “Interfacial bonding enhances thermoelectric cooling in 3D-printed materials,” <i>Science</i>, vol. 387, no. 6736. AAAS, pp. 845–850, 2025.","ista":"Xu S, Horta S, Lawal AQ, Maji K, Lorion M, Ibáñez M. 2025. Interfacial bonding enhances thermoelectric cooling in 3D-printed materials. Science. 387(6736), 845–850.","short":"S. Xu, S. Horta, A.Q. Lawal, K. Maji, M. Lorion, M. Ibáñez, Science 387 (2025) 845–850.","mla":"Xu, Shengduo, et al. “Interfacial Bonding Enhances Thermoelectric Cooling in 3D-Printed Materials.” <i>Science</i>, vol. 387, no. 6736, AAAS, 2025, pp. 845–50, doi:<a href=\"https://doi.org/10.1126/science.ads0426\">10.1126/science.ads0426</a>.","chicago":"Xu, Shengduo, Sharona Horta, Abayomi Q Lawal, Krishnendu Maji, Magali Lorion, and Maria Ibáñez. “Interfacial Bonding Enhances Thermoelectric Cooling in 3D-Printed Materials.” <i>Science</i>. AAAS, 2025. <a href=\"https://doi.org/10.1126/science.ads0426\">https://doi.org/10.1126/science.ads0426</a>."},"status":"public","scopus_import":"1","acknowledgement":"This work was supported by the Scientific Service Units (SSU) of ISTA through resources provided by the Electron Microscopy Facility (EMF), the Lab Support Facility (LSF), the Communication & Events facility, the Miba Machine Shop, and the Nanofabrication Facility (NNF). The Mechanical Response of Materials (MRM) Service Unit of the Technical University of Wien is acknowledged for Mechanical tests. X. L. Yan and S. Bühler-Paschen (Institute of Solid-State Physics, Technical University of Wien) are acknowledged for granting us access to their equipment, which allowed us to perform independent corroborative measurements. M. Qin is acknowledged for help with Au deposition and wire bonding for samples used for PPMS measurements. The lab of B. Hof and Z. Lu is acknowledged for help with rheological properties measurements. The members of the Ibáñez research group, especially N. Jakhar, C. Fiedler, and T. Kleinhanns, are acknowledged for their feedback on the manuscript and fruitful discussions. This work was financially supported by ISTA and the Werner Siemens Foundation.","OA_type":"closed access","title":"Interfacial bonding enhances thermoelectric cooling in 3D-printed materials","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","article_type":"original","publication_identifier":{"eissn":["1095-9203"]},"date_created":"2025-03-09T23:01:26Z","publication":"Science","abstract":[{"lang":"eng","text":"Thermoelectric coolers (TECs) are pivotal in modern heat management but face limitations in efficiency and manufacturing scalability. We address these challenges by using an extrusion-based 3D printing technique to fabricate high-performance thermoelectric materials. Our ink formulations ensure the integrity of the 3D-printed structure and effective particle bonding during sintering, achieving record-high figure of merit (zT) values of 1.42 for p-type bismuth antimony telluride [(Bi,Sb)2Te3] and 1.3 for n-type silver selenide (Ag2Se) materials at room temperature. The resulting TEC demonstrates a cooling temperature gradient of 50°C in air. Moreover, this scalable and cost-effective method circumvents energy-intensive and time-consuming steps, such as ingot preparation and subsequently machining processes, offering a transformative solution for thermoelectric device production and heralding a new era of efficient and sustainable thermoelectric technologies."}],"date_updated":"2026-04-28T13:43:53Z","type":"journal_article"},{"abstract":[{"text":"We present a comprehensive analysis of H i absorption around 96 Lyα emitters (LAEs) at z ≈ 3.3 (median Lyα luminosity ≈1042 erg s−1). These LAEs were identified within eight MUSE fields, each (math. formular) on the sky and centered on a bright background quasar, as part of the MUSEQuBES survey. Using Voigt profile fitting for all H i absorbers detected within ±​​​​​​500 km s−1 of these LAEs, we compiled a catalog of 800 H i absorption components. Our analysis shows that H i absorption is enhanced near the LAEs compared to the intergalactic medium. However, no trend is found between the column densities of H i absorbers and their impact parameters from the LAEs (spanning ​​​​​​≈54–260 pkpc). Additionally, all galaxies associated with Lyman-limit systems have impact parameters >50 pkpc from the quasar sightlines, suggesting that true absorber hosts may be too faint to detect. The LAEs show an overall H i covering fraction (fc(H i)) of ≈88% for a threshold (math. formular) (H i) = 15. Notably, at the same threshold, the LAEs in pairs/groups exhibit a 100% H i covering fraction out to ≈250 pkpc. In contrast, isolated LAEs consistently show a lower fc(H i) of ≈80%. This environmental influence on fc(H i) is also evident up to ≈300 km s−1 in differential bins of line-of-sight velocity. We find an anticorrelation between fc(H i) and the equivalent width of rest-frame Lyα emission (EW0). Based on the Lyα shell model, this could imply that gas-rich galaxies tend to reside in gas-rich environments or that the LAEs with higher EW0 are more efficient at ionizing their surrounding medium.","lang":"eng"}],"publication_identifier":{"issn":["0004-637X"],"eissn":["1538-4357"]},"date_created":"2025-03-09T23:01:26Z","publication":"The Astrophysical Journal","file_date_updated":"2025-03-10T11:54:52Z","date_updated":"2026-02-16T12:42:00Z","type":"journal_article","DOAJ_listed":"1","OA_place":"publisher","article_type":"original","OA_type":"gold","title":"MUSEQuBES: Connecting H i Absorption with Lyα emitters at z ≈ 3.3","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa":1,"has_accepted_license":"1","status":"public","citation":{"apa":"Banerjee, E., Muzahid, S., Schaye, J., Blaizot, J., Bouché, N., Cantalupo, S., … Verhamme, A. (2025). MUSEQuBES: Connecting H i Absorption with Lyα emitters at z ≈ 3.3. <i>The Astrophysical Journal</i>. IOP Publishing. <a href=\"https://doi.org/10.3847/1538-4357/ada7e9\">https://doi.org/10.3847/1538-4357/ada7e9</a>","ama":"Banerjee E, Muzahid S, Schaye J, et al. MUSEQuBES: Connecting H i Absorption with Lyα emitters at z ≈ 3.3. <i>The Astrophysical Journal</i>. 2025;980(2). doi:<a href=\"https://doi.org/10.3847/1538-4357/ada7e9\">10.3847/1538-4357/ada7e9</a>","ieee":"E. Banerjee <i>et al.</i>, “MUSEQuBES: Connecting H i Absorption with Lyα emitters at z ≈ 3.3,” <i>The Astrophysical Journal</i>, vol. 980, no. 2. IOP Publishing, 2025.","ista":"Banerjee E, Muzahid S, Schaye J, Blaizot J, Bouché N, Cantalupo S, Johnson SD, Matthee JJ, Verhamme A. 2025. MUSEQuBES: Connecting H i Absorption with Lyα emitters at z ≈ 3.3. The Astrophysical Journal. 980(2), 171.","mla":"Banerjee, Eshita, et al. “MUSEQuBES: Connecting H i Absorption with Lyα Emitters at z ≈ 3.3.” <i>The Astrophysical Journal</i>, vol. 980, no. 2, 171, IOP Publishing, 2025, doi:<a href=\"https://doi.org/10.3847/1538-4357/ada7e9\">10.3847/1538-4357/ada7e9</a>.","short":"E. Banerjee, S. Muzahid, J. Schaye, J. Blaizot, N. Bouché, S. Cantalupo, S.D. Johnson, J.J. Matthee, A. Verhamme, The Astrophysical Journal 980 (2025).","chicago":"Banerjee, Eshita, Sowgat Muzahid, Joop Schaye, Jérémy Blaizot, Nicolas Bouché, Sebastiano Cantalupo, Sean D. Johnson, Jorryt J Matthee, and Anne Verhamme. “MUSEQuBES: Connecting H i Absorption with Lyα Emitters at z ≈ 3.3.” <i>The Astrophysical Journal</i>. IOP Publishing, 2025. <a href=\"https://doi.org/10.3847/1538-4357/ada7e9\">https://doi.org/10.3847/1538-4357/ada7e9</a>."},"file":[{"access_level":"open_access","success":1,"checksum":"1d33a8eb59f42a0c7a943c8859e9b883","relation":"main_file","content_type":"application/pdf","file_name":"2025_AstrophysicalJour_Banerjee.pdf","file_id":"19379","date_created":"2025-03-10T11:54:52Z","creator":"dernst","file_size":1194131,"date_updated":"2025-03-10T11:54:52Z"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"acknowledgement":"We would like to thank the anonymous referee for useful comments. We thank Marijke Segers, Lorrie Straka, and Monica Turner for their early contributions to the MUSEQuBES project. We thank Raghunathan Srianand for useful suggestions. E.B. thanks Labanya Kumar Guha and Yucheng Guo for helpful discussions. S.C. gratefully acknowledges the fund support from the European Research Council (ERC).\r\n\r\nSoftware: NumPy (C. R. Harris et al. 2020), SciPy (P. Virtanen et al. 2020), Matplotlib (J. D. Hunter 2007), and AstroPy (Astropy Collaboration et al. 2013, 2018).","scopus_import":"1","month":"02","day":"20","doi":"10.3847/1538-4357/ada7e9","department":[{"_id":"JoMa"}],"publication_status":"published","oa_version":"Published Version","language":[{"iso":"eng"}],"quality_controlled":"1","intvolume":"       980","volume":980,"issue":"2","_id":"19365","external_id":{"isi":["001421001500001"]},"isi":1,"author":[{"last_name":"Banerjee","full_name":"Banerjee, Eshita","first_name":"Eshita"},{"last_name":"Muzahid","full_name":"Muzahid, Sowgat","first_name":"Sowgat"},{"full_name":"Schaye, Joop","last_name":"Schaye","first_name":"Joop"},{"full_name":"Blaizot, Jérémy","last_name":"Blaizot","first_name":"Jérémy"},{"first_name":"Nicolas","last_name":"Bouché","full_name":"Bouché, Nicolas"},{"last_name":"Cantalupo","full_name":"Cantalupo, Sebastiano","first_name":"Sebastiano"},{"last_name":"Johnson","full_name":"Johnson, Sean D.","first_name":"Sean D."},{"id":"7439a258-f3c0-11ec-9501-9df22fe06720","full_name":"Matthee, Jorryt J","last_name":"Matthee","first_name":"Jorryt J","orcid":"0000-0003-2871-127X"},{"first_name":"Anne","last_name":"Verhamme","full_name":"Verhamme, Anne"}],"publisher":"IOP Publishing","ddc":["520"],"article_number":"171","year":"2025","date_published":"2025-02-20T00:00:00Z","article_processing_charge":"Yes"},{"volume":15,"intvolume":"        15","isi":1,"author":[{"full_name":"Saenz-De-Juano, Mara D.","last_name":"Saenz-De-Juano","first_name":"Mara D."},{"last_name":"Silvestrelli","full_name":"Silvestrelli, Giulia","id":"12632ae8-799e-11ef-94a2-e5a3b5ef49e9","first_name":"Giulia"},{"first_name":"Samuel","last_name":"Buri","full_name":"Buri, Samuel"},{"full_name":"Zinsli, Léa V.","last_name":"Zinsli","first_name":"Léa V."},{"first_name":"Mathias","full_name":"Schmelcher, Mathias","last_name":"Schmelcher"},{"first_name":"Susanne E.","last_name":"Ulbrich","full_name":"Ulbrich, Susanne E."}],"external_id":{"isi":["001426697000031"],"pmid":["39972051"]},"_id":"19366","year":"2025","publisher":"Springer Nature","ddc":["570"],"article_processing_charge":"Yes","page":"6059","date_published":"2025-02-19T00:00:00Z","pmid":1,"file_date_updated":"2025-03-10T12:00:34Z","type":"journal_article","DOAJ_listed":"1","date_updated":"2025-09-30T10:58:59Z","abstract":[{"text":"Staphylococcus aureus (S. aureus) is one of the most common causative agents of mammary gland infection and mastitis, but the specific role of S. aureus-derived extracellular vesicles (SaEVs) in mastitis has been poorly studied to date. Here, we aimed to investigate the response of bovine monocyte-derived macrophages (boMdM) to SaEVs of the genotype B (GTB) mastitis-related strain M5512B. Specifically, we evaluated the effects on the actin cytoskeleton, gene expression, and the SaEV proteomic cargo. Furthermore, we assessed to what extent the cellular and molecular response of boMdM to SaEVs differed from peripheral mononuclear blood cells (PBMCs) used for in vitro derivation of the former. We observed that SaEVs induced morphological changes in boMdM, leading to a pro-inflammatory and pyroptosis-related increased gene expression. Additionally, our study revealed that boMdM and PBMCs exhibited stimulus-specific differing responses. The proteomic analysis of SaEVs identified clusters of proteins related to virulence and antibiotic resistance, supporting the theory that S. aureus might use EVs to evade host defences and colonize the mammary gland. Our results bring new insights into how SaEVs might impact the host during an S. aureus infection, which can be useful for future S. aureus vaccine development.","lang":"eng"}],"publication":"Scientific Reports","date_created":"2025-03-09T23:01:26Z","publication_identifier":{"eissn":["2045-2322"]},"has_accepted_license":"1","oa":1,"article_type":"original","OA_place":"publisher","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","title":"Mastitis-related Staphylococcus aureus-derived extracellular vesicles induce a pro-inflammatory response in bovine monocyte-derived macrophages","OA_type":"gold","acknowledgement":"The authors thank Michele Guastalla for his contributions to the boMdM analyses and Stephan Handschin from the Scientific Center for Optical and Electron Microscopy (ScopeM) of ETH Zurich for the TEM imaging. We gratefully acknowledge the Functional Genomics Center Zurich (FGCZ) for performing the mass spectrometry analysis for this study.\r\nOpen access funding provided by Swiss Federal Institute of Technology Zurich. This work was supported by basic funding from ETH Zurich.","scopus_import":"1","status":"public","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"citation":{"mla":"Saenz-De-Juano, Mara D., et al. “Mastitis-Related Staphylococcus Aureus-Derived Extracellular Vesicles Induce a pro-Inflammatory Response in Bovine Monocyte-Derived Macrophages.” <i>Scientific Reports</i>, vol. 15, Springer Nature, 2025, p. 6059, doi:<a href=\"https://doi.org/10.1038/s41598-025-90466-6\">10.1038/s41598-025-90466-6</a>.","short":"M.D. Saenz-De-Juano, G. Silvestrelli, S. Buri, L.V. Zinsli, M. Schmelcher, S.E. Ulbrich, Scientific Reports 15 (2025) 6059.","chicago":"Saenz-De-Juano, Mara D., Giulia Silvestrelli, Samuel Buri, Léa V. Zinsli, Mathias Schmelcher, and Susanne E. Ulbrich. “Mastitis-Related Staphylococcus Aureus-Derived Extracellular Vesicles Induce a pro-Inflammatory Response in Bovine Monocyte-Derived Macrophages.” <i>Scientific Reports</i>. Springer Nature, 2025. <a href=\"https://doi.org/10.1038/s41598-025-90466-6\">https://doi.org/10.1038/s41598-025-90466-6</a>.","ista":"Saenz-De-Juano MD, Silvestrelli G, Buri S, Zinsli LV, Schmelcher M, Ulbrich SE. 2025. Mastitis-related Staphylococcus aureus-derived extracellular vesicles induce a pro-inflammatory response in bovine monocyte-derived macrophages. Scientific Reports. 15, 6059.","ieee":"M. D. Saenz-De-Juano, G. Silvestrelli, S. Buri, L. V. Zinsli, M. Schmelcher, and S. E. Ulbrich, “Mastitis-related Staphylococcus aureus-derived extracellular vesicles induce a pro-inflammatory response in bovine monocyte-derived macrophages,” <i>Scientific Reports</i>, vol. 15. Springer Nature, p. 6059, 2025.","ama":"Saenz-De-Juano MD, Silvestrelli G, Buri S, Zinsli LV, Schmelcher M, Ulbrich SE. Mastitis-related Staphylococcus aureus-derived extracellular vesicles induce a pro-inflammatory response in bovine monocyte-derived macrophages. <i>Scientific Reports</i>. 2025;15:6059. doi:<a href=\"https://doi.org/10.1038/s41598-025-90466-6\">10.1038/s41598-025-90466-6</a>","apa":"Saenz-De-Juano, M. D., Silvestrelli, G., Buri, S., Zinsli, L. V., Schmelcher, M., &#38; Ulbrich, S. E. (2025). Mastitis-related Staphylococcus aureus-derived extracellular vesicles induce a pro-inflammatory response in bovine monocyte-derived macrophages. <i>Scientific Reports</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41598-025-90466-6\">https://doi.org/10.1038/s41598-025-90466-6</a>"},"file":[{"content_type":"application/pdf","checksum":"51b55ae299de1fa126016a11024b499a","relation":"main_file","access_level":"open_access","success":1,"date_updated":"2025-03-10T12:00:34Z","creator":"dernst","file_size":2780316,"file_id":"19380","date_created":"2025-03-10T12:00:34Z","file_name":"2025_ScientificReports_SaenzdeJuano.pdf"}],"oa_version":"Published Version","language":[{"iso":"eng"}],"quality_controlled":"1","month":"02","department":[{"_id":"LoSw"}],"publication_status":"published","day":"19","doi":"10.1038/s41598-025-90466-6"},{"month":"02","corr_author":"1","department":[{"_id":"XiFe"}],"publication_status":"published","day":"07","doi":"10.1093/plphys/kiaf055","quality_controlled":"1","language":[{"iso":"eng"}],"oa_version":"Published Version","status":"public","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"citation":{"ieee":"J. G. De Jaeger-Braet, “Arabidopsis accessions and their difference in heat tolerance during meiosis,” <i>Plant Physiology</i>, vol. 197, no. 2. Oxford University Press, 2025.","apa":"De Jaeger-Braet, J. G. (2025). Arabidopsis accessions and their difference in heat tolerance during meiosis. <i>Plant Physiology</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/plphys/kiaf055\">https://doi.org/10.1093/plphys/kiaf055</a>","ama":"De Jaeger-Braet JG. Arabidopsis accessions and their difference in heat tolerance during meiosis. <i>Plant Physiology</i>. 2025;197(2). doi:<a href=\"https://doi.org/10.1093/plphys/kiaf055\">10.1093/plphys/kiaf055</a>","mla":"De Jaeger-Braet, Joke G. “Arabidopsis Accessions and Their Difference in Heat Tolerance during Meiosis.” <i>Plant Physiology</i>, vol. 197, no. 2, kiaf055, Oxford University Press, 2025, doi:<a href=\"https://doi.org/10.1093/plphys/kiaf055\">10.1093/plphys/kiaf055</a>.","short":"J.G. De Jaeger-Braet, Plant Physiology 197 (2025).","chicago":"De Jaeger-Braet, Joke G. “Arabidopsis Accessions and Their Difference in Heat Tolerance during Meiosis.” <i>Plant Physiology</i>. Oxford University Press, 2025. <a href=\"https://doi.org/10.1093/plphys/kiaf055\">https://doi.org/10.1093/plphys/kiaf055</a>.","ista":"De Jaeger-Braet JG. 2025. Arabidopsis accessions and their difference in heat tolerance during meiosis. Plant Physiology. 197(2), kiaf055."},"file":[{"file_name":"2025_PlantPhysiology_deJaegerBraet.pdf","file_id":"19570","date_created":"2025-04-16T07:25:21Z","creator":"dernst","file_size":320184,"date_updated":"2025-04-16T07:25:21Z","access_level":"open_access","success":1,"checksum":"28e18fd7d00c74782f4f42501ecd4aae","relation":"main_file","content_type":"application/pdf"}],"scopus_import":"1","article_type":"original","OA_place":"publisher","title":"Arabidopsis accessions and their difference in heat tolerance during meiosis","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","OA_type":"hybrid","has_accepted_license":"1","oa":1,"publication":"Plant Physiology","date_created":"2025-03-09T23:01:27Z","publication_identifier":{"eissn":["1532-2548"]},"file_date_updated":"2025-04-16T07:25:21Z","PlanS_conform":"1","type":"journal_article","date_updated":"2025-09-30T10:48:08Z","pmid":1,"date_published":"2025-02-07T00:00:00Z","article_processing_charge":"Yes (in subscription journal)","publisher":"Oxford University Press","ddc":["580"],"year":"2025","article_number":"kiaf055","issue":"2","_id":"19367","external_id":{"isi":["001427994500001"],"pmid":["39938057"]},"author":[{"last_name":"De Jaeger-Braet","full_name":"De Jaeger-Braet, Joke G","id":"26bd38d3-c59a-11ee-a1af-d7a988cafcc5","first_name":"Joke G"}],"isi":1,"intvolume":"       197","volume":197},{"date_published":"2025-02-01T00:00:00Z","article_processing_charge":"Yes (via OA deal)","publisher":"Wiley","ddc":["550"],"article_number":"e2024WR037766","year":"2025","_id":"19369","external_id":{"isi":["001419509100001"]},"issue":"2","isi":1,"author":[{"first_name":"N.","full_name":"Bulovic, N.","last_name":"Bulovic"},{"first_name":"F.","last_name":"Johnson","full_name":"Johnson, F."},{"last_name":"Lievens","full_name":"Lievens, H.","first_name":"H."},{"last_name":"Shaw","id":"3caa3f91-1f03-11ee-96ce-e0e553054d6e","full_name":"Shaw, Thomas","first_name":"Thomas","orcid":"0000-0001-7640-6152"},{"full_name":"Mcphee, J.","last_name":"Mcphee","first_name":"J."},{"first_name":"S.","full_name":"Gascoin, S.","last_name":"Gascoin"},{"first_name":"M.","full_name":"Demuzere, M.","last_name":"Demuzere"},{"full_name":"Mcintyre, N.","last_name":"Mcintyre","first_name":"N."}],"intvolume":"        61","volume":61,"month":"02","day":"01","doi":"10.1029/2024WR037766","department":[{"_id":"FrPe"}],"publication_status":"published","language":[{"iso":"eng"}],"oa_version":"Published Version","quality_controlled":"1","status":"public","citation":{"ama":"Bulovic N, Johnson F, Lievens H, et al. Evaluating the performance of sentinel-1 SAR derived snow depth retrievals over the extratropical Andes cordillera. <i>Water Resources Research</i>. 2025;61(2). doi:<a href=\"https://doi.org/10.1029/2024WR037766\">10.1029/2024WR037766</a>","apa":"Bulovic, N., Johnson, F., Lievens, H., Shaw, T., Mcphee, J., Gascoin, S., … Mcintyre, N. (2025). Evaluating the performance of sentinel-1 SAR derived snow depth retrievals over the extratropical Andes cordillera. <i>Water Resources Research</i>. Wiley. <a href=\"https://doi.org/10.1029/2024WR037766\">https://doi.org/10.1029/2024WR037766</a>","ieee":"N. Bulovic <i>et al.</i>, “Evaluating the performance of sentinel-1 SAR derived snow depth retrievals over the extratropical Andes cordillera,” <i>Water Resources Research</i>, vol. 61, no. 2. Wiley, 2025.","ista":"Bulovic N, Johnson F, Lievens H, Shaw T, Mcphee J, Gascoin S, Demuzere M, Mcintyre N. 2025. Evaluating the performance of sentinel-1 SAR derived snow depth retrievals over the extratropical Andes cordillera. Water Resources Research. 61(2), e2024WR037766.","mla":"Bulovic, N., et al. “Evaluating the Performance of Sentinel-1 SAR Derived Snow Depth Retrievals over the Extratropical Andes Cordillera.” <i>Water Resources Research</i>, vol. 61, no. 2, e2024WR037766, Wiley, 2025, doi:<a href=\"https://doi.org/10.1029/2024WR037766\">10.1029/2024WR037766</a>.","chicago":"Bulovic, N., F. Johnson, H. Lievens, Thomas Shaw, J. Mcphee, S. Gascoin, M. Demuzere, and N. Mcintyre. “Evaluating the Performance of Sentinel-1 SAR Derived Snow Depth Retrievals over the Extratropical Andes Cordillera.” <i>Water Resources Research</i>. Wiley, 2025. <a href=\"https://doi.org/10.1029/2024WR037766\">https://doi.org/10.1029/2024WR037766</a>.","short":"N. Bulovic, F. Johnson, H. Lievens, T. Shaw, J. Mcphee, S. Gascoin, M. Demuzere, N. Mcintyre, Water Resources Research 61 (2025)."},"file":[{"file_size":6362563,"creator":"dernst","date_updated":"2025-03-10T08:16:05Z","file_name":"2025_WaterResourcesResearch_Bulovic.pdf","date_created":"2025-03-10T08:16:05Z","file_id":"19377","relation":"main_file","checksum":"8ff09dcae2e508fd72aee80300fc40e2","content_type":"application/pdf","success":1,"access_level":"open_access"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"acknowledgement":"This research was supported by the University of Queensland's PhD scholarship program, the Australian Research Council under the Future Fellowship program (Project ID:FT140100977), and the Sustainable Minerals Institute International Centre of Excellence (Chile). Fiona Johnson is supported by a UNSW Scientia Funding and ARC Training Centre in Data Analytics for Resources and Environments(Grant IC190100031). The authors also thank Liliana Pagliero, Maxi Viale and Rodrigo Correa for their support with obtaining the DGA, SNIH, and Codelco data sets, and the PlanetLabs research and education initiative for free imagery. Open access publishing facilitated by The University of Queensland, as part of the Wiley ‐ The University of Queensland agreement via the Council of Australian University Librarians.","scopus_import":"1","OA_place":"publisher","article_type":"original","OA_type":"gold","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","title":"Evaluating the performance of sentinel-1 SAR derived snow depth retrievals over the extratropical Andes cordillera","oa":1,"has_accepted_license":"1","abstract":[{"text":"Monitoring and estimating mountain snowpack mass over regional scales is still a challenge because of the inadequacy of observational networks in capturing spatiotemporal variability, and limitations in remotely sensed retrievals. Recent work using C-band synthetic aperture radar (SAR) backscatter data from the Sentinel-1 satellite mission has shown good promise for tracking mountain snow depth over specific northern hemisphere ranges, although the broader potential is still unknown. Here, we extend the new Sentinel-1 based modeling framework beyond the northern hemisphere by only utilizing globally available input data, and evaluate different model parametrization and model performance over the Chilean and Argentine Andes mountains, which contain the largest mountain snowpack in the southern hemisphere. The accuracy of Sentinel-1 snow depth estimates is evaluated against an extensive in situ network available for the region. Satellite-retrieved snow depth is found to have poorer performance across the Andes than observed for northern hemisphere mountain ranges because of greater sensitivity to evergreen forest cover and shallower snowpacks. The algorithm does offer some skill but performance is variable and site-dependent. Algorithm performance is best over regions with limited evergreen forest cover (<15%) and snow depths greater than 0.75 m, although the retrievals over-estimate snow depth across most sites. Systemic errors for specific snow classes and across different snow depths are shown, highlighting specific areas in need of further investigation and development.","lang":"eng"}],"publication_identifier":{"eissn":["1944-7973"],"issn":["0043-1397"]},"publication":"Water Resources Research","date_created":"2025-03-09T23:01:27Z","file_date_updated":"2025-03-10T08:16:05Z","PlanS_conform":"1","date_updated":"2025-09-30T10:48:43Z","type":"journal_article","DOAJ_listed":"1"},{"related_material":{"record":[{"id":"18549","relation":"earlier_version","status":"public"}],"link":[{"relation":"software","url":"https://git.ista.ac.at/amrnjava/schistosomes_slower_z"}]},"corr_author":"1","month":"02","department":[{"_id":"BeVi"}],"publication_status":"published","day":"01","doi":"10.1093/gbe/evaf021","oa_version":"Published Version","language":[{"iso":"eng"}],"quality_controlled":"1","status":"public","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"citation":{"ista":"Mrnjavac A, Vicoso B. 2025. Reduced efficacy of selection on a young Z chromosome region of schistosoma japonicum. Genome Biology and Evolution. 17(2), evaf021.","chicago":"Mrnjavac, Andrea, and Beatriz Vicoso. “Reduced Efficacy of Selection on a Young Z Chromosome Region of Schistosoma Japonicum.” <i>Genome Biology and Evolution</i>. Oxford University Press, 2025. <a href=\"https://doi.org/10.1093/gbe/evaf021\">https://doi.org/10.1093/gbe/evaf021</a>.","mla":"Mrnjavac, Andrea, and Beatriz Vicoso. “Reduced Efficacy of Selection on a Young Z Chromosome Region of Schistosoma Japonicum.” <i>Genome Biology and Evolution</i>, vol. 17, no. 2, evaf021, Oxford University Press, 2025, doi:<a href=\"https://doi.org/10.1093/gbe/evaf021\">10.1093/gbe/evaf021</a>.","short":"A. Mrnjavac, B. Vicoso, Genome Biology and Evolution 17 (2025).","apa":"Mrnjavac, A., &#38; Vicoso, B. (2025). Reduced efficacy of selection on a young Z chromosome region of schistosoma japonicum. <i>Genome Biology and Evolution</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/gbe/evaf021\">https://doi.org/10.1093/gbe/evaf021</a>","ama":"Mrnjavac A, Vicoso B. Reduced efficacy of selection on a young Z chromosome region of schistosoma japonicum. <i>Genome Biology and Evolution</i>. 2025;17(2). doi:<a href=\"https://doi.org/10.1093/gbe/evaf021\">10.1093/gbe/evaf021</a>","ieee":"A. Mrnjavac and B. Vicoso, “Reduced efficacy of selection on a young Z chromosome region of schistosoma japonicum,” <i>Genome Biology and Evolution</i>, vol. 17, no. 2. Oxford University Press, 2025."},"file":[{"content_type":"application/pdf","relation":"main_file","checksum":"e3aa993e3d6dad10cb806c243fa57408","success":1,"access_level":"open_access","date_updated":"2025-03-10T08:25:59Z","file_size":768371,"creator":"dernst","date_created":"2025-03-10T08:25:59Z","file_id":"19378","file_name":"2025_GBE_Mrnjavac.pdf"}],"scopus_import":"1","acknowledgement":"The authors would like to thank three anonymous reviewers for comments and suggestions. We are also grateful to Christelle Fraïsse, Marwan Elkrewi, and Filip Ruzicka for the help in this project.","article_type":"original","OA_place":"publisher","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","title":"Reduced efficacy of selection on a young Z chromosome region of schistosoma japonicum","OA_type":"gold","oa":1,"has_accepted_license":"1","abstract":[{"lang":"eng","text":"Sex-linked and autosomal loci experience different selective pressures and evolutionary dynamics. X (or Z) chromosomes are often hemizygous in males (or females), as Y (or W) chromosomes often degenerate. Such hemizygous regions can be under greater efficacy of selection, as recessive mutations are immediately exposed to selection in the heterogametic sex leading to faster adaptation and faster divergence on the X chromosome (the so-called Faster-X or Faster-Z effect). However, in young nonrecombining regions, Y/W chromosomes often have many functional genes, and many X/Z-linked loci are therefore diploid. The sheltering of recessive mutations on the X/Z by the Y/W homolog is expected to drive slower adaptation for diploid X/Z loci, i.e. a reduction in the efficacy of selection. While the Faster-X effect has been studied extensively, much less is known empirically about the evolutionary dynamics of diploid X or Z chromosomes. Here, we took advantage of published population genomic data in the female-heterogametic human parasite Schistosoma japonicum to characterize the gene content and diversity levels of the diploid and hemizygous regions of the Z chromosome. We used different metrics of selective pressures acting on genes to test for differences in the efficacy of selection in hemizygous and diploid Z regions, relative to autosomes. We found consistent patterns suggesting reduced Ne, and reduced efficacy of purifying selection, on both hemizygous and diploid Z regions. Moreover, relaxed selection was particularly pronounced for female-biased genes on the diploid Z, as predicted by recent theoretical work."}],"date_created":"2025-03-09T23:01:27Z","publication":"Genome Biology and Evolution","publication_identifier":{"eissn":["1759-6653"]},"file_date_updated":"2025-03-10T08:25:59Z","type":"journal_article","date_updated":"2025-09-30T10:49:17Z","pmid":1,"date_published":"2025-02-01T00:00:00Z","article_processing_charge":"Yes","publisher":"Oxford University Press","ddc":["570"],"year":"2025","article_number":"evaf021","_id":"19370","issue":"2","external_id":{"isi":["001423671400001"],"pmid":["39913672"]},"isi":1,"author":[{"first_name":"Andrea","last_name":"Mrnjavac","full_name":"Mrnjavac, Andrea","id":"353FAC84-AE61-11E9-8BFC-00D3E5697425"},{"orcid":"0000-0002-4579-8306","first_name":"Beatriz","full_name":"Vicoso, Beatriz","id":"49E1C5C6-F248-11E8-B48F-1D18A9856A87","last_name":"Vicoso"}],"intvolume":"        17","volume":17},{"file_date_updated":"2025-03-10T07:08:21Z","type":"journal_article","DOAJ_listed":"1","date_updated":"2025-04-14T07:48:55Z","abstract":[{"text":"We investigate a molecular quantum rotor in a two-dimensional Bose-Einstein condensate. The focus is on studying the angulon quasiparticle concept in the crossover from few- to many-body physics. To this end, we formulate the problem in real space and solve it with a mean-field approach in the frame co-rotating with the impurity. We show that the system starts to feature angulon characteristics when the size of the bosonic cloud is large enough to screen the rotor. More importantly, we demonstrate the departure from the angulon picture for large system sizes or large angular momenta where the properties of the system are determined by collective excitations of the Bose gas.","lang":"eng"}],"date_created":"2025-03-09T23:01:28Z","publication":"SciPost Physics","publication_identifier":{"eissn":["2542-4653"]},"has_accepted_license":"1","oa":1,"article_type":"original","OA_place":"publisher","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"Quantum rotor in a two-dimensional mesoscopic Bose gas","OA_type":"gold","scopus_import":"1","acknowledgement":"We thank Fabian Brauneis, Arthur Christianen and Pietro Massignan for useful discussions. M. S. and A. G. V. would like to thank the Institut Henri Poincaré\r\n(UAR 839 CNRS-Sorbonne Université) and the LabEx CARMIN (ANR-10-LABX-59-01) for\r\ntheir support and hospitality during the final stages of completion of this work. M.S.\r\nand M.T. acknowledge the National Science Centre, Poland, within Sonata Bis Grant No.\r\n2020/38/E/ST2/00564. M.L. acknowledges support by the European Research Council (ERC)\r\nStarting Grant No.801770 (ANGULON). M.S. acknowledges the National Science Centre,\r\nPoland, within Preludium Grant No. 2023/49/N/ST2/03820. We gratefully acknowledge\r\nPoland’s high-performance Infrastructure PLGrid ACK Cyfronet AGH for providing computer\r\nfacilities and support within computational grant no PLG/2023/016878.","status":"public","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"citation":{"ista":"Suchorowski M, Badamshina A, Lemeshko M, Tomza M, Volosniev A. 2025. Quantum rotor in a two-dimensional mesoscopic Bose gas. SciPost Physics. 18(2), 059.","chicago":"Suchorowski, Michał, Alina Badamshina, Mikhail Lemeshko, Michał Tomza, and Artem Volosniev. “Quantum Rotor in a Two-Dimensional Mesoscopic Bose Gas.” <i>SciPost Physics</i>. SciPost Foundation, 2025. <a href=\"https://doi.org/10.21468/SciPostPhys.18.2.059\">https://doi.org/10.21468/SciPostPhys.18.2.059</a>.","mla":"Suchorowski, Michał, et al. “Quantum Rotor in a Two-Dimensional Mesoscopic Bose Gas.” <i>SciPost Physics</i>, vol. 18, no. 2, 059, SciPost Foundation, 2025, doi:<a href=\"https://doi.org/10.21468/SciPostPhys.18.2.059\">10.21468/SciPostPhys.18.2.059</a>.","short":"M. Suchorowski, A. Badamshina, M. Lemeshko, M. Tomza, A. Volosniev, SciPost Physics 18 (2025).","ama":"Suchorowski M, Badamshina A, Lemeshko M, Tomza M, Volosniev A. Quantum rotor in a two-dimensional mesoscopic Bose gas. <i>SciPost Physics</i>. 2025;18(2). doi:<a href=\"https://doi.org/10.21468/SciPostPhys.18.2.059\">10.21468/SciPostPhys.18.2.059</a>","apa":"Suchorowski, M., Badamshina, A., Lemeshko, M., Tomza, M., &#38; Volosniev, A. (2025). Quantum rotor in a two-dimensional mesoscopic Bose gas. <i>SciPost Physics</i>. SciPost Foundation. <a href=\"https://doi.org/10.21468/SciPostPhys.18.2.059\">https://doi.org/10.21468/SciPostPhys.18.2.059</a>","ieee":"M. Suchorowski, A. Badamshina, M. Lemeshko, M. Tomza, and A. Volosniev, “Quantum rotor in a two-dimensional mesoscopic Bose gas,” <i>SciPost Physics</i>, vol. 18, no. 2. SciPost Foundation, 2025."},"file":[{"creator":"dernst","file_size":1124066,"date_updated":"2025-03-10T07:08:21Z","file_name":"2025_SciPostPhys_Suchorowski.pdf","date_created":"2025-03-10T07:08:21Z","file_id":"19376","checksum":"7bed8c68c36d495540491bd0579e33e4","relation":"main_file","content_type":"application/pdf","access_level":"open_access","success":1}],"arxiv":1,"quality_controlled":"1","language":[{"iso":"eng"}],"oa_version":"Published Version","month":"02","corr_author":"1","publication_status":"published","department":[{"_id":"MiLe"}],"day":"19","doi":"10.21468/SciPostPhys.18.2.059","ec_funded":1,"volume":18,"intvolume":"        18","author":[{"last_name":"Suchorowski","full_name":"Suchorowski, Michał","first_name":"Michał"},{"first_name":"Alina","last_name":"Badamshina","full_name":"Badamshina, Alina"},{"orcid":"0000-0002-6990-7802","first_name":"Mikhail","full_name":"Lemeshko, Mikhail","id":"37CB05FA-F248-11E8-B48F-1D18A9856A87","last_name":"Lemeshko"},{"full_name":"Tomza, Michał","last_name":"Tomza","first_name":"Michał"},{"orcid":"0000-0003-0393-5525","first_name":"Artem","full_name":"Volosniev, Artem","id":"37D278BC-F248-11E8-B48F-1D18A9856A87","last_name":"Volosniev"}],"_id":"19371","issue":"2","external_id":{"arxiv":["2407.06046"]},"year":"2025","article_number":"059","project":[{"grant_number":"801770","name":"Angulon: physics and applications of a new quasiparticle","call_identifier":"H2020","_id":"2688CF98-B435-11E9-9278-68D0E5697425"}],"publisher":"SciPost Foundation","ddc":["530"],"article_processing_charge":"Yes","date_published":"2025-02-19T00:00:00Z"},{"year":"2025","publisher":"Mathematical Sciences Publishers","article_processing_charge":"No","page":"281-325","date_published":"2025-02-23T00:00:00Z","volume":6,"intvolume":"         6","author":[{"first_name":"Morris","orcid":"0000-0002-6249-0928","id":"B7ECF9FC-AA38-11E9-AC9A-0930E6697425","full_name":"Brooks, Morris","last_name":"Brooks"},{"full_name":"Mitrouskas, David Johannes","id":"cbddacee-2b11-11eb-a02e-a2e14d04e52d","last_name":"Mitrouskas","first_name":"David Johannes"}],"issue":"1","_id":"19372","external_id":{"arxiv":["2306.16373"]},"acknowledgement":"M.B. gratefully acknowledges funding from the ERC Advanced Grant ERC-AdG CLaQS, grant agreement n. 83478.","scopus_import":"1","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2306.16373"}],"status":"public","citation":{"ista":"Brooks M, Mitrouskas DJ. 2025.  Asymptotic series for low-energy excitations of the Fröhlich polaron at strong coupling. Probability and Mathematical Physics. 6(1), 281–325.","chicago":"Brooks, Morris, and David Johannes Mitrouskas. “ Asymptotic Series for Low-Energy Excitations of the Fröhlich Polaron at Strong Coupling.” <i>Probability and Mathematical Physics</i>. Mathematical Sciences Publishers, 2025. <a href=\"https://doi.org/10.2140/pmp.2025.6.281\">https://doi.org/10.2140/pmp.2025.6.281</a>.","mla":"Brooks, Morris, and David Johannes Mitrouskas. “ Asymptotic Series for Low-Energy Excitations of the Fröhlich Polaron at Strong Coupling.” <i>Probability and Mathematical Physics</i>, vol. 6, no. 1, Mathematical Sciences Publishers, 2025, pp. 281–325, doi:<a href=\"https://doi.org/10.2140/pmp.2025.6.281\">10.2140/pmp.2025.6.281</a>.","short":"M. Brooks, D.J. Mitrouskas, Probability and Mathematical Physics 6 (2025) 281–325.","ama":"Brooks M, Mitrouskas DJ.  Asymptotic series for low-energy excitations of the Fröhlich polaron at strong coupling. <i>Probability and Mathematical Physics</i>. 2025;6(1):281-325. doi:<a href=\"https://doi.org/10.2140/pmp.2025.6.281\">10.2140/pmp.2025.6.281</a>","apa":"Brooks, M., &#38; Mitrouskas, D. J. (2025).  Asymptotic series for low-energy excitations of the Fröhlich polaron at strong coupling. <i>Probability and Mathematical Physics</i>. Mathematical Sciences Publishers. <a href=\"https://doi.org/10.2140/pmp.2025.6.281\">https://doi.org/10.2140/pmp.2025.6.281</a>","ieee":"M. Brooks and D. J. Mitrouskas, “ Asymptotic series for low-energy excitations of the Fröhlich polaron at strong coupling,” <i>Probability and Mathematical Physics</i>, vol. 6, no. 1. Mathematical Sciences Publishers, pp. 281–325, 2025."},"arxiv":1,"oa_version":"Preprint","language":[{"iso":"eng"}],"quality_controlled":"1","corr_author":"1","month":"02","publication_status":"published","department":[{"_id":"RoSe"}],"day":"23","doi":"10.2140/pmp.2025.6.281","type":"journal_article","date_updated":"2025-03-10T07:19:02Z","abstract":[{"lang":"eng","text":"We consider the confined Fröhlich polaron and establish an asymptotic series for the low-energy eigenvalues in negative powers of the coupling constant. The coefficients of the series are derived through a two-fold perturbation approach, involving expansions around the electron Pekar minimizer and the excitations of the quantum field."}],"publication":"Probability and Mathematical Physics","date_created":"2025-03-09T23:01:28Z","publication_identifier":{"issn":["2690-0998"],"eissn":["2690-1005"]},"oa":1,"article_type":"original","OA_place":"repository","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":" Asymptotic series for low-energy excitations of the Fröhlich polaron at strong coupling","OA_type":"green"},{"has_accepted_license":"1","oa":1,"article_type":"original","OA_place":"publisher","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","title":"Mechanochemical bistability of intestinal organoids enables robust morphogenesis","OA_type":"hybrid","file_date_updated":"2025-08-05T12:12:03Z","PlanS_conform":"1","type":"journal_article","date_updated":"2025-09-30T10:47:36Z","abstract":[{"lang":"eng","text":"Reproducible pattern and form generation during embryogenesis is poorly understood. Intestinal organoid morphogenesis involves a number of mechanochemical regulators such as cell-type-specific cytoskeletal forces and osmotically driven lumen volume changes. It is unclear how these forces are coordinated in time and space to ensure robust morphogenesis. Here we show how mechanosensitive feedback on cytoskeletal tension gives rise to morphological bistability in a minimal model of organoid morphogenesis. In the model, lumen volume changes can impact the epithelial shape via both direct mechanical and indirect mechanosensitive mechanisms. We find that both bulged and budded crypt states are possible and dependent on the history of volume changes. We test key modelling assumptions via biophysical and pharmacological experiments to demonstrate how bistability can explain experimental observations, such as the importance of the timing of lumen shrinkage and robustness of the final morphogenetic state to mechanical perturbations. This suggests that bistability arising from feedback between cellular tensions and fluid pressure could be a general mechanism that coordinates multicellular shape changes in developing systems."}],"date_created":"2025-03-09T23:01:28Z","publication":"Nature Physics","publication_identifier":{"eissn":["1745-2481"],"issn":["1745-2473"]},"arxiv":1,"language":[{"iso":"eng"}],"quality_controlled":"1","oa_version":"Published Version","month":"02","corr_author":"1","publication_status":"published","department":[{"_id":"EdHa"}],"doi":"10.1038/s41567-025-02792-1","ec_funded":1,"day":"28","scopus_import":"1","acknowledgement":"We thank all members of the Hannezo and Liberali groups for fruitful discussions, as well as C. Schwayer, G. Quintas, L. Capolupo, D. Bruckner and D. Pinheiro for reading the manuscript. We also thank Y. Wu and X. Wu from the Yang group for performing experiments in the last rounds of revision and the So group at the National Institute of Biological Sciences, Beijing, for helping with the light-sheet time-lapse experiments. This work received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme via grant agreement no. 758617 (to P.L.), Swiss National Foundation (SNF) (no. POOP3_157531 to P.L.), the ERC under the European Union’s Horizon 2020 research and innovation programme under grant agreement no. 851288 (to E.H.) and the Austrian Science Fund (FWF) (no. P 31639 to E.H.). This work was supported by the National Natural Science Foundation of China via grant no.3247060387 (to Q.Y.) and the Strategic Priority Research Program of the Chinese Academy of Sciences (no. XDB0820000 to Q.Y.) . Open access funding provided by Institute of Science and Technology (IST Austria).","status":"public","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"citation":{"mla":"Xue, Shi-lei, et al. “Mechanochemical Bistability of Intestinal Organoids Enables Robust Morphogenesis.” <i>Nature Physics</i>, vol. 21, 078104, Springer Nature, 2025, doi:<a href=\"https://doi.org/10.1038/s41567-025-02792-1\">10.1038/s41567-025-02792-1</a>.","short":"S. Xue, Q. Yang, P. Liberali, E.B. Hannezo, Nature Physics 21 (2025).","chicago":"Xue, Shi-lei, Qiutan Yang, Prisca Liberali, and Edouard B Hannezo. “Mechanochemical Bistability of Intestinal Organoids Enables Robust Morphogenesis.” <i>Nature Physics</i>. Springer Nature, 2025. <a href=\"https://doi.org/10.1038/s41567-025-02792-1\">https://doi.org/10.1038/s41567-025-02792-1</a>.","ista":"Xue S, Yang Q, Liberali P, Hannezo EB. 2025. Mechanochemical bistability of intestinal organoids enables robust morphogenesis. Nature Physics. 21, 078104.","ieee":"S. Xue, Q. Yang, P. Liberali, and E. B. Hannezo, “Mechanochemical bistability of intestinal organoids enables robust morphogenesis,” <i>Nature Physics</i>, vol. 21. Springer Nature, 2025.","apa":"Xue, S., Yang, Q., Liberali, P., &#38; Hannezo, E. B. (2025). Mechanochemical bistability of intestinal organoids enables robust morphogenesis. <i>Nature Physics</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41567-025-02792-1\">https://doi.org/10.1038/s41567-025-02792-1</a>","ama":"Xue S, Yang Q, Liberali P, Hannezo EB. Mechanochemical bistability of intestinal organoids enables robust morphogenesis. <i>Nature Physics</i>. 2025;21. doi:<a href=\"https://doi.org/10.1038/s41567-025-02792-1\">10.1038/s41567-025-02792-1</a>"},"file":[{"file_id":"20129","date_created":"2025-08-05T12:12:03Z","file_name":"2025_NaturePhysics_Xue.pdf","date_updated":"2025-08-05T12:12:03Z","file_size":16302436,"creator":"dernst","success":1,"access_level":"open_access","content_type":"application/pdf","relation":"main_file","checksum":"fb5e59be145b95f9851d3d7c9dbb85e6"}],"author":[{"full_name":"Xue, Shi-lei","id":"31D2C804-F248-11E8-B48F-1D18A9856A87","last_name":"Xue","first_name":"Shi-lei"},{"first_name":"Qiutan","last_name":"Yang","full_name":"Yang, Qiutan"},{"full_name":"Liberali, Prisca","last_name":"Liberali","first_name":"Prisca"},{"id":"3A9DB764-F248-11E8-B48F-1D18A9856A87","full_name":"Hannezo, Edouard B","last_name":"Hannezo","first_name":"Edouard B","orcid":"0000-0001-6005-1561"}],"isi":1,"_id":"19373","external_id":{"pmid":["40248571"],"arxiv":["2403.19900"],"isi":["001434072800001"]},"volume":21,"intvolume":"        21","article_processing_charge":"Yes (via OA deal)","date_published":"2025-02-28T00:00:00Z","pmid":1,"year":"2025","article_number":"078104","project":[{"_id":"05943252-7A3F-11EA-A408-12923DDC885E","name":"Design Principles of Branching Morphogenesis","call_identifier":"H2020","grant_number":"851288"},{"_id":"268294B6-B435-11E9-9278-68D0E5697425","call_identifier":"FWF","name":"Active mechano-chemical description of the cell cytoskeleton","grant_number":"P31639"}],"publisher":"Springer Nature","ddc":["530"]},{"article_type":"original","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"The new PrNi6Si6 intermetallic: From crystal structure to thermal and electrical transport properties across a wide temperature range (2–900 K)","_id":"19374","OA_type":"closed access","author":[{"last_name":"Singh","full_name":"Singh, Saurabh","id":"12d625da-9cb3-11ed-9667-af09d37d3f0a","orcid":"0000-0003-2209-5269","first_name":"Saurabh"},{"full_name":"Provino, A.","last_name":"Provino","first_name":"A."},{"last_name":"Pallecchi","full_name":"Pallecchi, I.","first_name":"I."},{"first_name":"F.","full_name":"Caglieris, F.","last_name":"Caglieris"},{"first_name":"M.","full_name":"Mödlinger, M.","last_name":"Mödlinger"},{"first_name":"P.","full_name":"Mele, P.","last_name":"Mele"},{"full_name":"Latronico, G.","last_name":"Latronico","first_name":"G."},{"full_name":"Takeuchi, T.","last_name":"Takeuchi","first_name":"T."},{"first_name":"P.","full_name":"Manfrinetti, P.","last_name":"Manfrinetti"}],"intvolume":"        60","abstract":[{"lang":"eng","text":"In the present study, the new ternary rare earth intermetallic compound PrNi6Si6 has been investigated. This work completes the study of the RNi6Si6 series (R = rare earth). While the RNi6Si6 compounds for R = La and Ce adopt the CeNi6Si6-type (tP52, P4/nbm, No. 125), surprisingly PrNi6Si6 crystallizes in the YNi6Si6 prototype (tP52, P − 4b2, No. 117) as do all the heavier lanthanides (but Lu). The YNi6Si6-type and its homolog CeNi6Si6 are two tetragonal ordered derivative of the cubic NaZn13-type structure. Lattice parameters for PrNi6Si6 are a = 7.7846(1) Å, c = 11.2144(1) Å, with a unit cell volume, Vobs = 679.585(5) Å3. The temperature dependence of the inverse magnetic susceptibility χ−1(T) follows the Curie–Weiss law, with calculated values of the effective magnetic moment (µeff) and Weiss temperature (Θpm) of 3.55 μB and − 4.5 K, respectively. While the observed µeff is very close to the theoretical value of 3.58 µB for the free Pr3+ ions, a negative value of the Weiss temperature suggests antiferromagnetic interactions in PrNi6Si6. Magnetization measurements confirm that PrNi₆Si₆ orders antiferromagnetically (AFM) below a Néel temperature (TN) of 9 K. The Ni atoms contribute negligibly to the magnetic properties of this phase. The specific heat of PrNi₆Si₆ is approximately 0.42 J K  − 1  g − 1. Measurements of electric and thermal transport reveal that PrNi₆Si₆ exhibits metallic behavior across a wide temperature range of 2–900 K, accompanied by a relatively low thermal conductivity of around 6 W K − 1 m − 1 at room temperature. Such properties, together with its high-temperature refractory behavior, make PrNi₆Si₆ worthy of consideration in technological applications where fairly good electrical conductivity should be accompanied by a limited thermal conductivity."}],"date_created":"2025-03-09T23:01:29Z","publication":"Journal of Materials Science","publication_identifier":{"eissn":["1573-4803"],"issn":["0022-2461"]},"volume":60,"type":"journal_article","date_updated":"2025-03-10T06:53:16Z","date_published":"2025-02-08T00:00:00Z","month":"02","department":[{"_id":"MaIb"}],"publication_status":"published","doi":"10.1007/s10853-024-10582-y","day":"08","article_processing_charge":"No","oa_version":"None","language":[{"iso":"eng"}],"quality_controlled":"1","status":"public","publisher":"Springer Nature","citation":{"ieee":"S. Singh <i>et al.</i>, “The new PrNi6Si6 intermetallic: From crystal structure to thermal and electrical transport properties across a wide temperature range (2–900 K),” <i>Journal of Materials Science</i>, vol. 60. Springer Nature, 2025.","apa":"Singh, S., Provino, A., Pallecchi, I., Caglieris, F., Mödlinger, M., Mele, P., … Manfrinetti, P. (2025). The new PrNi6Si6 intermetallic: From crystal structure to thermal and electrical transport properties across a wide temperature range (2–900 K). <i>Journal of Materials Science</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s10853-024-10582-y\">https://doi.org/10.1007/s10853-024-10582-y</a>","ama":"Singh S, Provino A, Pallecchi I, et al. The new PrNi6Si6 intermetallic: From crystal structure to thermal and electrical transport properties across a wide temperature range (2–900 K). <i>Journal of Materials Science</i>. 2025;60. doi:<a href=\"https://doi.org/10.1007/s10853-024-10582-y\">10.1007/s10853-024-10582-y</a>","mla":"Singh, Saurabh, et al. “The New PrNi6Si6 Intermetallic: From Crystal Structure to Thermal and Electrical Transport Properties across a Wide Temperature Range (2–900 K).” <i>Journal of Materials Science</i>, vol. 60, 100051, Springer Nature, 2025, doi:<a href=\"https://doi.org/10.1007/s10853-024-10582-y\">10.1007/s10853-024-10582-y</a>.","chicago":"Singh, Saurabh, A. Provino, I. Pallecchi, F. Caglieris, M. Mödlinger, P. Mele, G. Latronico, T. Takeuchi, and P. Manfrinetti. “The New PrNi6Si6 Intermetallic: From Crystal Structure to Thermal and Electrical Transport Properties across a Wide Temperature Range (2–900 K).” <i>Journal of Materials Science</i>. Springer Nature, 2025. <a href=\"https://doi.org/10.1007/s10853-024-10582-y\">https://doi.org/10.1007/s10853-024-10582-y</a>.","short":"S. Singh, A. Provino, I. Pallecchi, F. Caglieris, M. Mödlinger, P. Mele, G. Latronico, T. Takeuchi, P. Manfrinetti, Journal of Materials Science 60 (2025).","ista":"Singh S, Provino A, Pallecchi I, Caglieris F, Mödlinger M, Mele P, Latronico G, Takeuchi T, Manfrinetti P. 2025. The new PrNi6Si6 intermetallic: From crystal structure to thermal and electrical transport properties across a wide temperature range (2–900 K). Journal of Materials Science. 60, 100051."},"year":"2025","scopus_import":"1","article_number":"100051"},{"type":"conference","date_updated":"2025-09-30T10:46:54Z","publication":"26th International Conference on Verification, Model Checking, and Abstract Interpretation","date_created":"2025-03-09T23:01:29Z","publication_identifier":{"issn":["0302-9743"],"isbn":["9783031827020"],"eissn":["1611-3349"]},"abstract":[{"text":"Despite the advances in probabilistic model checking, the scalability of the verification methods remains limited. In particular, the state space often becomes extremely large when instantiating parameterized Markov decision processes (MDPs) even with moderate values. Synthesizing policies for such huge MDPs is beyond the reach of available tools. We propose a learning-based approach to obtain a reasonable policy for such huge MDPs.\r\n\r\nThe idea is to generalize optimal policies obtained by model-checking small instances to larger ones using decision-tree learning. Consequently, our method bypasses the need for explicit state-space exploration of large models, providing a practical solution to the state-space explosion problem. We demonstrate the efficacy of our approach by performing extensive experimentation on the relevant models from the quantitative verification benchmark set. The experimental results indicate that our policies perform well, even when the size of the model is orders of magnitude beyond the reach of state-of-the-art analysis tools.","lang":"eng"}],"oa":1,"conference":{"start_date":"2025-01-20","name":"VMCAI: Verification, Model Checking, and Abstract Interpretation","end_date":"2025-01-21","location":"Denver, CO, United States"},"title":"1–2–3–Go! Policy synthesis for parameterized Markov decision processes via decision-tree learning and generalization","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","OA_type":"green","OA_place":"repository","scopus_import":"1","acknowledgement":"This research was funded in part by the DFG project 427755713 GOPro, the DFG GRK 2428 (ConVeY), the MUNI Award in Science and Humanities (MUNI/I/1757/2021) of the Grant Agency of Masaryk University, and the EU under MSCA grant agreement 101034413 (IST-BRIDGE).","citation":{"mla":"Azeem, Muqsit, et al. “1–2–3–Go! Policy Synthesis for Parameterized Markov Decision Processes via Decision-Tree Learning and Generalization.” <i>26th International Conference on Verification, Model Checking, and Abstract Interpretation</i>, vol. 15530, Springer Nature, 2025, pp. 97–120, doi:<a href=\"https://doi.org/10.1007/978-3-031-82703-7_5\">10.1007/978-3-031-82703-7_5</a>.","chicago":"Azeem, Muqsit, Debraj Chakraborty, Sudeep Kanav, Jan Kretinsky, Mohammadsadegh Mohagheghi, Stefanie Mohr, and Maximilian Weininger. “1–2–3–Go! Policy Synthesis for Parameterized Markov Decision Processes via Decision-Tree Learning and Generalization.” In <i>26th International Conference on Verification, Model Checking, and Abstract Interpretation</i>, 15530:97–120. Springer Nature, 2025. <a href=\"https://doi.org/10.1007/978-3-031-82703-7_5\">https://doi.org/10.1007/978-3-031-82703-7_5</a>.","short":"M. Azeem, D. Chakraborty, S. Kanav, J. Kretinsky, M. Mohagheghi, S. Mohr, M. Weininger, in:, 26th International Conference on Verification, Model Checking, and Abstract Interpretation, Springer Nature, 2025, pp. 97–120.","ista":"Azeem M, Chakraborty D, Kanav S, Kretinsky J, Mohagheghi M, Mohr S, Weininger M. 2025. 1–2–3–Go! Policy synthesis for parameterized Markov decision processes via decision-tree learning and generalization. 26th International Conference on Verification, Model Checking, and Abstract Interpretation. VMCAI: Verification, Model Checking, and Abstract Interpretation, LNCS, vol. 15530, 97–120.","ieee":"M. Azeem <i>et al.</i>, “1–2–3–Go! Policy synthesis for parameterized Markov decision processes via decision-tree learning and generalization,” in <i>26th International Conference on Verification, Model Checking, and Abstract Interpretation</i>, Denver, CO, United States, 2025, vol. 15530, pp. 97–120.","ama":"Azeem M, Chakraborty D, Kanav S, et al. 1–2–3–Go! Policy synthesis for parameterized Markov decision processes via decision-tree learning and generalization. In: <i>26th International Conference on Verification, Model Checking, and Abstract Interpretation</i>. Vol 15530. Springer Nature; 2025:97-120. doi:<a href=\"https://doi.org/10.1007/978-3-031-82703-7_5\">10.1007/978-3-031-82703-7_5</a>","apa":"Azeem, M., Chakraborty, D., Kanav, S., Kretinsky, J., Mohagheghi, M., Mohr, S., &#38; Weininger, M. (2025). 1–2–3–Go! Policy synthesis for parameterized Markov decision processes via decision-tree learning and generalization. In <i>26th International Conference on Verification, Model Checking, and Abstract Interpretation</i> (Vol. 15530, pp. 97–120). Denver, CO, United States: Springer Nature. <a href=\"https://doi.org/10.1007/978-3-031-82703-7_5\">https://doi.org/10.1007/978-3-031-82703-7_5</a>"},"main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2410.18293"}],"status":"public","language":[{"iso":"eng"}],"oa_version":"Preprint","quality_controlled":"1","arxiv":1,"publication_status":"published","department":[{"_id":"KrCh"}],"doi":"10.1007/978-3-031-82703-7_5","day":"23","ec_funded":1,"month":"01","volume":15530,"intvolume":"     15530","isi":1,"author":[{"full_name":"Azeem, Muqsit","last_name":"Azeem","first_name":"Muqsit"},{"first_name":"Debraj","full_name":"Chakraborty, Debraj","last_name":"Chakraborty"},{"full_name":"Kanav, Sudeep","last_name":"Kanav","first_name":"Sudeep"},{"orcid":"0000-0002-8122-2881","first_name":"Jan","full_name":"Kretinsky, Jan","id":"44CEF464-F248-11E8-B48F-1D18A9856A87","last_name":"Kretinsky"},{"first_name":"Mohammadsadegh","last_name":"Mohagheghi","full_name":"Mohagheghi, Mohammadsadegh"},{"last_name":"Mohr","full_name":"Mohr, Stefanie","first_name":"Stefanie"},{"full_name":"Weininger, Maximilian","id":"02ab0197-cc70-11ed-ab61-918e71f56881","last_name":"Weininger","first_name":"Maximilian"}],"alternative_title":["LNCS"],"external_id":{"isi":["001446577100005"],"arxiv":["2410.18293"]},"_id":"19375","year":"2025","project":[{"_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c","name":"IST-BRIDGE: International postdoctoral program","call_identifier":"H2020","grant_number":"101034413"}],"publisher":"Springer Nature","page":"97-120","article_processing_charge":"No","date_published":"2025-01-23T00:00:00Z"},{"oa_version":"Published Version","language":[{"iso":"eng"}],"publication_status":"published","department":[{"_id":"GradSch"},{"_id":"MiLe"}],"day":"13","doi":"10.15479/AT-ISTA-19393","related_material":{"record":[{"relation":"part_of_dissertation","id":"14851","status":"public"},{"status":"public","id":"12788","relation":"part_of_dissertation"},{"id":"19425","relation":"part_of_dissertation","status":"public"},{"id":"9903","relation":"part_of_dissertation","status":"public"},{"id":"15004","relation":"part_of_dissertation","status":"public"}]},"corr_author":"1","month":"03","tmp":{"name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","short":"CC BY-NC-ND (4.0)","image":"/images/cc_by_nc_nd.png","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode"},"file":[{"success":1,"access_level":"open_access","relation":"main_file","checksum":"d3ab25782c7ea38ce9910e57d25f6733","content_type":"application/pdf","file_name":"thesis_final.pdf","file_id":"19394","date_created":"2025-03-12T12:56:46Z","file_size":10625143,"creator":"vkarle","date_updated":"2025-03-12T12:56:46Z"},{"creator":"vkarle","file_size":23119202,"date_updated":"2025-03-20T08:02:35Z","file_name":"thesis.zip","file_id":"19400","date_created":"2025-03-13T13:15:10Z","checksum":"3ccfb0aeba4d860d71e18347913034e4","relation":"source_file","content_type":"application/zip","access_level":"closed"}],"citation":{"mla":"Karle, Volker. <i>Non-Equilibrium Topological Phases with Periodically Driven Molecules and Quantum Rotors</i>. Institute of Science and Technology Austria, 2025, doi:<a href=\"https://doi.org/10.15479/AT-ISTA-19393\">10.15479/AT-ISTA-19393</a>.","chicago":"Karle, Volker. “Non-Equilibrium Topological Phases with Periodically Driven Molecules and Quantum Rotors.” Institute of Science and Technology Austria, 2025. <a href=\"https://doi.org/10.15479/AT-ISTA-19393\">https://doi.org/10.15479/AT-ISTA-19393</a>.","short":"V. Karle, Non-Equilibrium Topological Phases with Periodically Driven Molecules and Quantum Rotors, Institute of Science and Technology Austria, 2025.","ista":"Karle V. 2025. Non-equilibrium topological phases with periodically driven molecules and quantum rotors. Institute of Science and Technology Austria.","ieee":"V. Karle, “Non-equilibrium topological phases with periodically driven molecules and quantum rotors,” Institute of Science and Technology Austria, 2025.","ama":"Karle V. Non-equilibrium topological phases with periodically driven molecules and quantum rotors. 2025. doi:<a href=\"https://doi.org/10.15479/AT-ISTA-19393\">10.15479/AT-ISTA-19393</a>","apa":"Karle, V. (2025). <i>Non-equilibrium topological phases with periodically driven molecules and quantum rotors</i>. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT-ISTA-19393\">https://doi.org/10.15479/AT-ISTA-19393</a>"},"status":"public","has_accepted_license":"1","oa":1,"user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","title":"Non-equilibrium topological phases with periodically driven molecules and quantum rotors","OA_type":"gold","OA_place":"publisher","type":"dissertation","date_updated":"2026-04-07T11:48:53Z","file_date_updated":"2025-03-20T08:02:35Z","supervisor":[{"orcid":"0000-0002-6990-7802","first_name":"Mikhail","last_name":"Lemeshko","full_name":"Lemeshko, Mikhail","id":"37CB05FA-F248-11E8-B48F-1D18A9856A87"}],"date_created":"2025-03-12T13:04:59Z","publication_identifier":{"eissn":["2663-337X"]},"abstract":[{"text":"Rotations constitute one of the fundamental symmetries in physics, characterized by their intricate group structure and infinite dimensional representations. In contrast to classical rotations, quantum mechanics unveils the SO(3) symmetry group structure, manifesting in phenomena without classical counterparts, from angular momentum quantization to non-trivial addition of angular momenta.\r\nWhile most studies of topological physics have focused on two-band systems, the SO(3) symmetry group of quantum rotors offers an inherently more complex platform with unprecedented possibilities for exploring topological phenomena. Despite their ubiquity in nature– from molecules to nanorotors– their potential for hosting topological phases has remained largely unexamined.\r\nIn this thesis, we mainly focus on periodically driven linear molecules as a prototype for studying topological phenomena in quantum rotors. Recent technological advances in coherent control of molecules, particularly through precisely shaped laser pulses, have made it possible to investigate linear rotors in the context of topology. While planar rotors have received some attention in recent years, threedimensional rotors–particularly linear molecules–harbor substantially richer topological phenomena due to their non-abelian nature and their additional angular degrees of freedom. We demonstrate that these systems can host novel edge states and topological features fundamentally impossible in planar systems.\r\nWe begin by establishing a theoretical bridge between periodically kicked rotors and \"crystalline\" lattices in angular momentum space. Using non-interacting linear molecules as our primary example, we show how quantum interference and revival patterns lead to the possibility to simulate band models with arbitrary number of bands N. While our framework applies to various quantum rotors, including nanorotors and kicked Bose-Einstein condensates, linear\r\nmolecules provide an ideal experimental platform due to their abovementioned precise controllability.\r\nThe core of this work examines adiabatic dynamics of 3D quantum rotors, establishing a geometric framework based on the Euler class to characterize its non-abelian topology. The non-Hermitian nature of the system enables novel braiding behaviors and topological transitions impossible in static systems, leading to an anomalous Dirac string phase with edge states in each gap, even though the Berry phases are all zero. These features can be directly observed through\r\nmolecular alignment and rotational level populations.\r\nThese findings establish quantum rotors as an alternative platform for studying multi-band topological physics, while suggesting practical implementations for quantum computation where topological protection could offer natural resilience against decoherence. The rich structure of three-dimensional rotation groups, combined with the tunability of topological features through driving parameters, makes this platform particularly valuable for exploring fundamental\r\nphysics and developing quantum technologies.","lang":"eng"}],"page":"192","article_processing_charge":"No","date_published":"2025-03-13T00:00:00Z","year":"2025","degree_awarded":"PhD","ddc":["530"],"publisher":"Institute of Science and Technology Austria","author":[{"id":"D7C012AE-D7ED-11E9-95E8-1EC5E5697425","full_name":"Karle, Volker","last_name":"Karle","first_name":"Volker","orcid":"0000-0002-6963-0129"}],"alternative_title":["ISTA Thesis"],"_id":"19393"},{"author":[{"first_name":"Aline","last_name":"Monzer","id":"2DB5D88C-D7B3-11E9-B8FD-7907E6697425","full_name":"Monzer, Aline"}],"_id":"19395","alternative_title":["ISTA Thesis"],"page":"160","article_processing_charge":"No","date_published":"2025-03-13T00:00:00Z","degree_awarded":"PhD","year":"2025","ddc":["580"],"publisher":"Institute of Science and Technology Austria","has_accepted_license":"1","oa":1,"title":"Cell-Surface Auxin Signaling: Linking molecular pathways to plant development","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","OA_place":"publisher","date_updated":"2026-06-18T18:14:07Z","type":"dissertation","file_date_updated":"2025-04-01T07:55:27Z","publication_identifier":{"eissn":["2663-337X"],"eisbn":["978-3-99078-054-1"]},"date_created":"2025-03-12T14:25:42Z","supervisor":[{"first_name":"Jiří","orcid":"0000-0002-8302-7596","last_name":"Friml","id":"4159519E-F248-11E8-B48F-1D18A9856A87","full_name":"Friml, Jiří"}],"abstract":[{"lang":"eng","text":"Plant growth and development rely significantly on phytohormones, with auxin serving as a master regulator, orchestrating processes from embryogenesis to organogenesis, vascular patterning, and environmental adaptation. Since its conceptual proposition by Charles Darwin in 1880 as an endogenous chemical signal influencing phototropism in grass, auxin has captivated scientists seeking to understand how such a small molecule exerts a profound influence on plant development.\r\nOne particularly fascinating aspect of auxin function is its ability to self-organize its transport. Through a feedback mechanism between auxin perception and directional transport—primarily mediated by PIN auxin transporters—auxin establishes narrow transport channels. This phenomenon, known as auxin canalization, is fundamental to vascular formation, regeneration, and other key developmental processes. Despite advances in our understanding, driven by experimental studies and computational models, auxin canalization remains an enigma, with many unanswered questions.\r\nLike other hormones, auxin functions through intricate signaling pathways. It operates through at least two distinct signaling mechanisms: the well-characterized canonical pathway and the less understood non-canonical pathway. While significant progress has been made in elucidating the canonical pathway, the non-canonical mechanisms remain less defined and require further investigation.\r\nIn this study, we revisit the non-canonical auxin signaling pathway mediated by the cell-surface complex Auxin Binding Protein 1-Transmembrane Kinase 1 (ABP1-TMK1), with a particular focus on its downstream phosphorylation events. We reveal that this auxin-mediated phosphorylation is conserved across the green lineage, underscoring its fundamental role in plant development. We explore key phosphorylation targets, particularly PIN2, which is essential for root gravitropism. To further understand TMK1’s role in diverse developmental processes, we identified and investigated its interactors as potential co-receptors or regulatory components within its signaling network.\r\nGiven the previously established role of ABP1-TMK1 in auxin canalization, we sought to further investigate this process and identified several TMK1 interactors also involved in this intricate mechanism.\r\nThese findings provide new insights into the complex regulation of auxin canalization, highlighting a broader and more interconnected signaling framework than previously understood."}],"language":[{"iso":"eng"}],"oa_version":"Published Version","acknowledged_ssus":[{"_id":"LifeSc"},{"_id":"Bio"}],"day":"13","doi":"10.15479/AT-ISTA-19395","department":[{"_id":"GradSch"},{"_id":"JiFr"}],"publication_status":"published","corr_author":"1","month":"03","related_material":{"record":[{"id":"12291","relation":"part_of_dissertation","status":"public"},{"id":"14826","relation":"part_of_dissertation","status":"public"},{"status":"public","id":"19398","relation":"part_of_dissertation"},{"status":"public","relation":"part_of_dissertation","id":"19399"}]},"acknowledgement":"I would like to acknowledge the facilities at ISTA, particularly LSF, IOF, and, of course, the plant facility, for providing the necessary resources for my research.","file":[{"file_id":"19396","date_created":"2025-03-12T14:14:49Z","file_name":"Final Thesis Aline Monzer.pdf","date_updated":"2025-03-12T14:14:49Z","file_size":13119670,"creator":"amonzer","success":1,"access_level":"open_access","content_type":"application/pdf","relation":"main_file","checksum":"9a3dd03bb4ec6b9907a325c3c4e8a1d7"},{"access_level":"closed","content_type":"application/vnd.openxmlformats-officedocument.wordprocessingml.document","relation":"source_file","checksum":"a353ce1ee2eabce37bca35499e76dbf1","date_created":"2025-03-12T14:15:19Z","file_id":"19397","file_name":"Thesis Aline.docx","date_updated":"2025-04-01T07:55:27Z","file_size":13774837,"creator":"amonzer"}],"citation":{"ieee":"A. Monzer, “Cell-Surface Auxin Signaling: Linking molecular pathways to plant development,” Institute of Science and Technology Austria, 2025.","apa":"Monzer, A. (2025). <i>Cell-Surface Auxin Signaling: Linking molecular pathways to plant development</i>. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT-ISTA-19395\">https://doi.org/10.15479/AT-ISTA-19395</a>","ama":"Monzer A. Cell-Surface Auxin Signaling: Linking molecular pathways to plant development. 2025. doi:<a href=\"https://doi.org/10.15479/AT-ISTA-19395\">10.15479/AT-ISTA-19395</a>","mla":"Monzer, Aline. <i>Cell-Surface Auxin Signaling: Linking Molecular Pathways to Plant Development</i>. Institute of Science and Technology Austria, 2025, doi:<a href=\"https://doi.org/10.15479/AT-ISTA-19395\">10.15479/AT-ISTA-19395</a>.","chicago":"Monzer, Aline. “Cell-Surface Auxin Signaling: Linking Molecular Pathways to Plant Development.” Institute of Science and Technology Austria, 2025. <a href=\"https://doi.org/10.15479/AT-ISTA-19395\">https://doi.org/10.15479/AT-ISTA-19395</a>.","short":"A. Monzer, Cell-Surface Auxin Signaling: Linking Molecular Pathways to Plant Development, Institute of Science and Technology Austria, 2025.","ista":"Monzer A. 2025. Cell-Surface Auxin Signaling: Linking molecular pathways to plant development. Institute of Science and Technology Austria."},"status":"public"},{"date_published":"2025-03-02T00:00:00Z","article_processing_charge":"No","publisher":"Cold Spring Harbor Laboratory","ddc":["580"],"year":"2025","_id":"19398","author":[{"last_name":"Monzer","full_name":"Monzer, Aline","id":"2DB5D88C-D7B3-11E9-B8FD-7907E6697425","first_name":"Aline"},{"first_name":"Ewa","full_name":"Mazur, Ewa","last_name":"Mazur"},{"last_name":"Rodriguez Solovey","id":"3922B506-F248-11E8-B48F-1D18A9856A87","full_name":"Rodriguez Solovey, Lesia","first_name":"Lesia","orcid":"0000-0002-7244-7237"},{"last_name":"Gallei","id":"35A03822-F248-11E8-B48F-1D18A9856A87","full_name":"Gallei, Michelle C","first_name":"Michelle C","orcid":"0000-0003-1286-7368"},{"first_name":"Minxia","id":"5c243f41-03f3-11ec-841c-96faf48a7ef9","full_name":"Zou, Minxia","last_name":"Zou"},{"last_name":"Smejkal","full_name":"Smejkal, Michael","id":"79a5a1be-04a3-11f0-ba18-a1730e0b58e9","first_name":"Michael"},{"full_name":"Cervenova, Ema","id":"9f185b95-04a3-11f0-8245-f5e32eeb470f","last_name":"Cervenova","first_name":"Ema"},{"first_name":"Jiří","orcid":"0000-0002-8302-7596","last_name":"Friml","id":"4159519E-F248-11E8-B48F-1D18A9856A87","full_name":"Friml, Jiří"}],"related_material":{"record":[{"id":"19395","relation":"dissertation_contains","status":"public"}]},"month":"03","corr_author":"1","publication_status":"draft","department":[{"_id":"GradSch"},{"_id":"JiFr"},{"_id":"EvBe"}],"day":"02","doi":"10.1101/2025.02.28.640727","acknowledged_ssus":[{"_id":"Bio"},{"_id":"LifeSc"}],"language":[{"iso":"eng"}],"oa_version":"Published Version","status":"public","main_file_link":[{"url":"https://doi.org/10.1101/2025.02.28.640727","open_access":"1"}],"tmp":{"name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","short":"CC BY-NC-ND (4.0)","image":"/images/cc_by_nc_nd.png","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode"},"citation":{"ista":"Monzer A, Mazur E, Rodriguez Solovey L, Gallei MC, Zou M, Smejkal M, Cervenova E, Friml J. TMK interacting network of receptor like kinases for auxin canalization and beyond. bioRxiv, <a href=\"https://doi.org/10.1101/2025.02.28.640727\">10.1101/2025.02.28.640727</a>.","short":"A. Monzer, E. Mazur, L. Rodriguez Solovey, M.C. Gallei, M. Zou, M. Smejkal, E. Cervenova, J. Friml, BioRxiv (n.d.).","mla":"Monzer, Aline, et al. “TMK Interacting Network of Receptor like Kinases for Auxin Canalization and Beyond.” <i>BioRxiv</i>, Cold Spring Harbor Laboratory, doi:<a href=\"https://doi.org/10.1101/2025.02.28.640727\">10.1101/2025.02.28.640727</a>.","chicago":"Monzer, Aline, Ewa Mazur, Lesia Rodriguez Solovey, Michelle C Gallei, Minxia Zou, Michael Smejkal, Ema Cervenova, and Jiří Friml. “TMK Interacting Network of Receptor like Kinases for Auxin Canalization and Beyond.” <i>BioRxiv</i>. Cold Spring Harbor Laboratory, n.d. <a href=\"https://doi.org/10.1101/2025.02.28.640727\">https://doi.org/10.1101/2025.02.28.640727</a>.","apa":"Monzer, A., Mazur, E., Rodriguez Solovey, L., Gallei, M. C., Zou, M., Smejkal, M., … Friml, J. (n.d.). TMK interacting network of receptor like kinases for auxin canalization and beyond. <i>bioRxiv</i>. Cold Spring Harbor Laboratory. <a href=\"https://doi.org/10.1101/2025.02.28.640727\">https://doi.org/10.1101/2025.02.28.640727</a>","ama":"Monzer A, Mazur E, Rodriguez Solovey L, et al. TMK interacting network of receptor like kinases for auxin canalization and beyond. <i>bioRxiv</i>. doi:<a href=\"https://doi.org/10.1101/2025.02.28.640727\">10.1101/2025.02.28.640727</a>","ieee":"A. Monzer <i>et al.</i>, “TMK interacting network of receptor like kinases for auxin canalization and beyond,” <i>bioRxiv</i>. Cold Spring Harbor Laboratory."},"acknowledgement":"We deeply appreciate M. Wrzaczek’s constructive input and insightful discussions, which significantly enriched this work. We thank L. Fiedler for helping with the heat map and for the discussions. We also thank the facilities at ISTA, the imaging and optics (IOF) and Lab Support (LSF) facilities for their service and assistance.","OA_place":"repository","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"TMK interacting network of receptor like kinases for auxin canalization and beyond","OA_type":"green","oa":1,"has_accepted_license":"1","abstract":[{"text":"Receptor-like kinases (RLKs), particularly the Transmembrane Kinase (TMK) family, play essential roles in signaling and development, with TMKs being key components of auxin perception and downstream phosphorylation events. While TMKs’ involvement in auxin canalization, a process essential for vasculature formation and regeneration, has been established, nonetheless, the additional signaling and regulatory partners remain poorly understood. In this study, we identify and characterize seven leucine-rich repeat RLKs (TINT1–TINT7) as novel interactors of TMK1, revealing their diverse evolutionary, structural, and functional characteristics. Our results show that TINTs interact with TMK1 and highlight their roles in regulating various developmental processes. Majority of TINTs contributes, together with TMK1, to auxin canalization, with TINT5 linking TMK1 to other canalization component CAMEL. Beyond canalization, we also establish the role of TINT-TMK1 interactions in processes such as stomatal movement and the hypocotyl’s gravitropic response. These findings suggest that TINTs, through their interaction with TMK1, are integral components of various signaling networks, contributing to both auxin canalization and broader plant development.","lang":"eng"}],"publication":"bioRxiv","date_created":"2025-03-12T14:28:53Z","type":"preprint","date_updated":"2026-06-18T18:13:35Z"},{"date_created":"2025-03-13T08:36:48Z","publication":"bioRxiv","abstract":[{"text":"Phytohormone auxin and its directional transport mediate much of the remarkably plastic development of higher plants. Positive feedback between auxin signaling and transport is a key prerequisite for (i) self-organizing processes including vascular tissue formation and (ii) directional growth responses such as gravitropism. Here we identify a mechanism, by which auxin signaling directly targets PIN auxin transporters. Via the cell-surface ABP1-TMK1 receptor module, auxin rapidly induces phosphorylation and thus stabilization of PIN2. Following gravistimulation, initial auxin asymmetry activates autophosphorylation of the TMK1 kinase. This induces TMK1 interaction with and phosphorylation of PIN2, stabilizing PIN2 at the lower root side, thus reinforcing asymmetric auxin flow for root bending. Upstream of TMK1 in this regulation, ABP1 acts redundantly with the root-expressed ABP1-LIKE auxin receptor ABL3. Such positive feedback between cell-surface auxin signaling and PIN-mediated polar auxin transport is fundamental for robust root gravitropism and presumably also for other self-organizing developmental phenomena.","lang":"eng"}],"type":"preprint","date_updated":"2026-06-18T18:14:07Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"ABP1/ABL3-TMK1 cell-surface auxin signaling directly targets PIN2-mediated auxin fluxes for root gravitropism","OA_type":"green","OA_place":"repository","oa":1,"citation":{"ista":"Rodriguez Solovey L, Fiedler L, Zou M, Giannini C, Monzer A, Vladimirtsev D, Randuch M, Yu Y, Gelová Z, Verstraeten I, Hajny J, Chen M, Tan S, Hörmayer L, Li L, Marques-Bueno MM, Quddoos Z, Molnar G, Xu T, Kulich I, Jaillais Y, Friml J. ABP1/ABL3-TMK1 cell-surface auxin signaling directly targets PIN2-mediated auxin fluxes for root gravitropism. bioRxiv, <a href=\"https://doi.org/10.1101/2022.11.30.518503\">10.1101/2022.11.30.518503</a>.","chicago":"Rodriguez Solovey, Lesia, Lukas Fiedler, Minxia Zou, Caterina Giannini, Aline Monzer, Dmitrii Vladimirtsev, Marek Randuch, et al. “ABP1/ABL3-TMK1 Cell-Surface Auxin Signaling Directly Targets PIN2-Mediated Auxin Fluxes for Root Gravitropism.” <i>BioRxiv</i>. Cold Spring Harbor Laboratory, n.d. <a href=\"https://doi.org/10.1101/2022.11.30.518503\">https://doi.org/10.1101/2022.11.30.518503</a>.","mla":"Rodriguez Solovey, Lesia, et al. “ABP1/ABL3-TMK1 Cell-Surface Auxin Signaling Directly Targets PIN2-Mediated Auxin Fluxes for Root Gravitropism.” <i>BioRxiv</i>, Cold Spring Harbor Laboratory, doi:<a href=\"https://doi.org/10.1101/2022.11.30.518503\">10.1101/2022.11.30.518503</a>.","short":"L. Rodriguez Solovey, L. Fiedler, M. Zou, C. Giannini, A. Monzer, D. Vladimirtsev, M. Randuch, Y. Yu, Z. Gelová, I. Verstraeten, J. Hajny, M. Chen, S. Tan, L. Hörmayer, L. Li, M.M. Marques-Bueno, Z. Quddoos, G. Molnar, T. Xu, I. Kulich, Y. Jaillais, J. Friml, BioRxiv (n.d.).","apa":"Rodriguez Solovey, L., Fiedler, L., Zou, M., Giannini, C., Monzer, A., Vladimirtsev, D., … Friml, J. (n.d.). ABP1/ABL3-TMK1 cell-surface auxin signaling directly targets PIN2-mediated auxin fluxes for root gravitropism. <i>bioRxiv</i>. Cold Spring Harbor Laboratory. <a href=\"https://doi.org/10.1101/2022.11.30.518503\">https://doi.org/10.1101/2022.11.30.518503</a>","ama":"Rodriguez Solovey L, Fiedler L, Zou M, et al. ABP1/ABL3-TMK1 cell-surface auxin signaling directly targets PIN2-mediated auxin fluxes for root gravitropism. <i>bioRxiv</i>. doi:<a href=\"https://doi.org/10.1101/2022.11.30.518503\">10.1101/2022.11.30.518503</a>","ieee":"L. Rodriguez Solovey <i>et al.</i>, “ABP1/ABL3-TMK1 cell-surface auxin signaling directly targets PIN2-mediated auxin fluxes for root gravitropism,” <i>bioRxiv</i>. Cold Spring Harbor Laboratory."},"status":"public","main_file_link":[{"url":"https://doi.org/10.1101/2022.11.30.518503","open_access":"1"}],"acknowledgement":"We thank W. Gray for providing material; N. Gnyliukh and E. Cervenova for help with manuscript preparation; J. Schmid for help with cloning. We thank Dolf Weijers, Mark Roosjen, and Andre Kuhn for discussions and support with phospho-proteomic analyses. We thank the Bioimaging and Life Science facilities at ISTA for their excellent service and assistance. The research leading to these results has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation program grant agreement No 742985 and Austrian Science Fund (FWF): I3630-775 B25 to J.F; National Natural Science Foundation of China (Grant 32130010, 31422008), start-up funds from FAFU to T.X., Y.J. was funded by ERC no. 3363360-APPL under FP/2007-2013. L.R. was supported by FP7-PEOPLE-2011-COFUND ISTFELLOW program (IC1023FELL01) and the European Molecular Biology Organization (EMBO) long-term postdoctoral fellowship (ALTF 985- 2016). S.T. was supported by the National Natural Science Foundation of China (32321001).","department":[{"_id":"JiFr"},{"_id":"XiFe"}],"publication_status":"draft","day":"20","ec_funded":1,"doi":"10.1101/2022.11.30.518503","related_material":{"record":[{"status":"public","id":"20656","relation":"later_version"},{"id":"19395","relation":"dissertation_contains","status":"public"},{"status":"public","id":"20364","relation":"dissertation_contains"}]},"corr_author":"1","month":"02","oa_version":"Published Version","language":[{"iso":"eng"}],"acknowledged_ssus":[{"_id":"Bio"},{"_id":"LifeSc"}],"_id":"19399","author":[{"last_name":"Rodriguez Solovey","full_name":"Rodriguez Solovey, Lesia","id":"3922B506-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-7244-7237","first_name":"Lesia"},{"last_name":"Fiedler","full_name":"Fiedler, Lukas","id":"7c417475-8972-11ed-ae7b-8b674ca26986","first_name":"Lukas"},{"id":"5c243f41-03f3-11ec-841c-96faf48a7ef9","full_name":"Zou, Minxia","last_name":"Zou","first_name":"Minxia"},{"first_name":"Caterina","last_name":"Giannini","full_name":"Giannini, Caterina","id":"e3fdddd5-f6e0-11ea-865d-ca99ee6367f4"},{"first_name":"Aline","last_name":"Monzer","id":"2DB5D88C-D7B3-11E9-B8FD-7907E6697425","full_name":"Monzer, Aline"},{"last_name":"Vladimirtsev","id":"60466724-5355-11ee-ae5a-fa55e8f99c3d","full_name":"Vladimirtsev, Dmitrii","first_name":"Dmitrii"},{"last_name":"Randuch","full_name":"Randuch, Marek","id":"6ac4636d-15b2-11ec-abd3-fb8df79972ae","first_name":"Marek"},{"full_name":"Yu, Yongfan","last_name":"Yu","first_name":"Yongfan"},{"orcid":"0000-0003-4783-1752","first_name":"Zuzana","full_name":"Gelová, Zuzana","id":"0AE74790-0E0B-11E9-ABC7-1ACFE5697425","last_name":"Gelová"},{"last_name":"Verstraeten","full_name":"Verstraeten, Inge","id":"362BF7FE-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-7241-2328","first_name":"Inge"},{"id":"4800CC20-F248-11E8-B48F-1D18A9856A87","full_name":"Hajny, Jakub","last_name":"Hajny","first_name":"Jakub","orcid":"0000-0003-2140-7195"},{"first_name":"Meng","last_name":"Chen","full_name":"Chen, Meng"},{"orcid":"0000-0002-0471-8285","first_name":"Shutang","full_name":"Tan, Shutang","id":"2DE75584-F248-11E8-B48F-1D18A9856A87","last_name":"Tan"},{"full_name":"Hörmayer, Lukas","id":"2EEE7A2A-F248-11E8-B48F-1D18A9856A87","last_name":"Hörmayer","orcid":"0000-0001-8295-2926","first_name":"Lukas"},{"id":"367EF8FA-F248-11E8-B48F-1D18A9856A87","full_name":"Li, Lanxin","last_name":"Li","first_name":"Lanxin","orcid":"0000-0002-5607-272X"},{"last_name":"Marques-Bueno","full_name":"Marques-Bueno, Maria Mar","first_name":"Maria Mar"},{"first_name":"Zainab","full_name":"Quddoos, Zainab","id":"32ff3c64-04a0-11f0-a50f-d0c45bfac466","last_name":"Quddoos"},{"id":"34F1AF46-F248-11E8-B48F-1D18A9856A87","full_name":"Molnar, Gergely","last_name":"Molnar","first_name":"Gergely"},{"full_name":"Xu, Tongda","last_name":"Xu","first_name":"Tongda"},{"first_name":"Ivan","last_name":"Kulich","full_name":"Kulich, Ivan","id":"57a1567c-8314-11eb-9063-c9ddc3451a54"},{"first_name":"Yvon","full_name":"Jaillais, Yvon","last_name":"Jaillais"},{"first_name":"Jiří","orcid":"0000-0002-8302-7596","id":"4159519E-F248-11E8-B48F-1D18A9856A87","full_name":"Friml, Jiří","last_name":"Friml"}],"ddc":["580"],"project":[{"_id":"261099A6-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","name":"Tracing Evolution of Auxin Transport and Polarity in Plants","grant_number":"742985"},{"grant_number":"I03630","name":"Molecular mechanisms of endocytic cargo recognition in plants","call_identifier":"FWF","_id":"26538374-B435-11E9-9278-68D0E5697425"},{"name":"International IST Postdoc Fellowship Programme","call_identifier":"FP7","grant_number":"291734","_id":"25681D80-B435-11E9-9278-68D0E5697425"},{"_id":"26060676-B435-11E9-9278-68D0E5697425","name":"Cell surface receptor complexes for auxin signaling in plants","grant_number":"ALTF 985-2016"}],"publisher":"Cold Spring Harbor Laboratory","year":"2025","date_published":"2025-02-20T00:00:00Z","article_processing_charge":"No"},{"type":"journal_article","DOAJ_listed":"1","date_updated":"2026-05-20T06:34:51Z","file_date_updated":"2025-03-17T10:53:32Z","publication":"Nature Communications","date_created":"2025-03-16T23:01:23Z","publication_identifier":{"eissn":["2041-1723"]},"abstract":[{"text":"High kinetic inductance superconductors are gaining increasing interest for the realisation of qubits, amplifiers and detectors. Moreover, thanks to their high impedance, quantum buses made of such materials enable large zero-point fluctuations of the voltage, boosting the coupling rates to spin and charge qubits. However, fully exploiting the potential of disordered or granular superconductors is challenging, as their inductance and, therefore, impedance at high values are difficult to control. Here, we report a reproducible fabrication of granular aluminium resonators by developing a wireless ohmmeter, which allows in situ measurements during film deposition and, therefore, control of the kinetic inductance of granular aluminium films. Reproducible fabrication of circuits with impedances (inductances) exceeding 13 kΩ (1 nH per square) is now possible. By integrating a 7.9 kΩ resonator with a germanium double quantum dot, we demonstrate strong charge-photon coupling with a rate of gc/2π = 566 ± 2 MHz. This broadly applicable method opens the path for novel qubits and high-fidelity, long-distance two-qubit gates.","lang":"eng"}],"oa":1,"has_accepted_license":"1","title":"Strong charge-photon coupling in planar germanium enabled by granular aluminium superinductors","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","OA_type":"gold","article_type":"original","APC_amount":"7068 EUR","OA_place":"publisher","scopus_import":"1","acknowledgement":"We acknowledge Franco De Palma, Mahya Khorramshahi, Fabian Oppliger, Thomas Reisinger, Pasquale Scarlino and Xiao Xue for helpful discussions. We thank Simon Robson for proofreading the manuscript. This research was supported by the Scientific Service Units of ISTA through resources provided by the MIBA Machine Shop and the Nanofabrication facility. This research and related results were made possible with the support of the NOMIS Foundation and the HORIZON-RIA 101069515 project. This research was funded in whole or in part by the Austrian Science Fund (FWF) https://doi.org/10.55776/P32235, https://doi.org/10.55776/I5060 and https://doi.org/10.55776/P36507. For Open Access purposes, the author has applied a CC BY public copyright license to any author accepted manuscript version arising from this submission. M.J. acknowledges funding from FellowQUTE 2024-01. K.R. acknowledges funding from the European Union’s Horizon 2020 research and innovation program under the Marie Skłodowska-Curie Grant Agreement No. 101034413. I.M.P. acknowledges funding from the Deutsche Forschungsgemeinschaft (DFG - German Research Foundation) under project number 450396347 (GeHoldeQED). ICN2 acknowledges funding from Generalitat de Catalunya 2021SGR00457. We acknowledge support from CSIC Interdisciplinary Thematic Platform (PTI+) on Quantum Technologies (PTI-QTEP+). This research work has been funded by the European Commission - NextGenerationEU (Regulation EU 2020/2094), through CSIC’s Quantum Technologies Platform (QTEP). ICN2 is supported by the Severo Ochoa programme from Spanish MCIN/AEI (Grant No.: CEX2021-001214-S) and is funded by the CERCA Programme/Generalitat de Catalunya. Part of the present work has been performed in the framework of Universitat Autònoma de Barcelona Materials Science PhD programme. AGM has received funding from Grant RYC2021-033479-I funded by MCIN/AEI/10.13039/501100011033 and by European Union NextGenerationEU/PRTR. M.B. acknowledges support from SUR Generalitat de Catalunya and the EU Social Fund; project ref. 2020 FI 00103. The authors acknowledge the use of instrumentation and the technical advice provided by the Joint Electron Microscopy Centre at ALBA (JEMCA). ICN2 acknowledges funding from Grant IU16-014206 (METCAM-FIB) funded by the European Union through the European Regional Development Fund (ERDF), with the support of the Ministry of Research and Universities, Generalitat de Catalunya. ICN2 is a founding member of e-DREAM60.","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"file":[{"file_name":"2025_NatureComm_Janik.pdf","date_created":"2025-03-17T10:53:32Z","file_id":"19415","file_size":6364878,"creator":"dernst","date_updated":"2025-03-17T10:53:32Z","success":1,"access_level":"open_access","relation":"main_file","checksum":"a9383dd978ca2c50b7dded6c0bb2cd49","content_type":"application/pdf"}],"citation":{"mla":"Janik, Marian, et al. “Strong Charge-Photon Coupling in Planar Germanium Enabled by Granular Aluminium Superinductors.” <i>Nature Communications</i>, vol. 16, 2103, Springer Nature, 2025, doi:<a href=\"https://doi.org/10.1038/s41467-025-57252-4\">10.1038/s41467-025-57252-4</a>.","chicago":"Janik, Marian, Kevin Etienne Robert Roux, Carla N Borja Espinosa, Oliver Sagi, Abdulhamid Baghdadi, Thomas Adletzberger, Stefano Calcaterra, et al. “Strong Charge-Photon Coupling in Planar Germanium Enabled by Granular Aluminium Superinductors.” <i>Nature Communications</i>. Springer Nature, 2025. <a href=\"https://doi.org/10.1038/s41467-025-57252-4\">https://doi.org/10.1038/s41467-025-57252-4</a>.","short":"M. Janik, K.E.R. Roux, C.N. Borja Espinosa, O. Sagi, A. Baghdadi, T. Adletzberger, S. Calcaterra, M. Botifoll, A. Garzón Manjón, J. Arbiol, D. Chrastina, G. Isella, I.M. Pop, G. Katsaros, Nature Communications 16 (2025).","ista":"Janik M, Roux KER, Borja Espinosa CN, Sagi O, Baghdadi A, Adletzberger T, Calcaterra S, Botifoll M, Garzón Manjón A, Arbiol J, Chrastina D, Isella G, Pop IM, Katsaros G. 2025. Strong charge-photon coupling in planar germanium enabled by granular aluminium superinductors. Nature Communications. 16, 2103.","ieee":"M. Janik <i>et al.</i>, “Strong charge-photon coupling in planar germanium enabled by granular aluminium superinductors,” <i>Nature Communications</i>, vol. 16. Springer Nature, 2025.","apa":"Janik, M., Roux, K. E. R., Borja Espinosa, C. N., Sagi, O., Baghdadi, A., Adletzberger, T., … Katsaros, G. (2025). Strong charge-photon coupling in planar germanium enabled by granular aluminium superinductors. <i>Nature Communications</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41467-025-57252-4\">https://doi.org/10.1038/s41467-025-57252-4</a>","ama":"Janik M, Roux KER, Borja Espinosa CN, et al. Strong charge-photon coupling in planar germanium enabled by granular aluminium superinductors. <i>Nature Communications</i>. 2025;16. doi:<a href=\"https://doi.org/10.1038/s41467-025-57252-4\">10.1038/s41467-025-57252-4</a>"},"status":"public","language":[{"iso":"eng"}],"oa_version":"Published Version","quality_controlled":"1","acknowledged_ssus":[{"_id":"M-Shop"},{"_id":"NanoFab"}],"arxiv":1,"publication_status":"published","department":[{"_id":"GeKa"},{"_id":"JoFi"},{"_id":"M-Shop"}],"doi":"10.1038/s41467-025-57252-4","day":"01","ec_funded":1,"related_material":{"record":[{"status":"public","relation":"earlier_version","id":"18144"},{"relation":"research_data","id":"18886","status":"public"}]},"corr_author":"1","month":"03","volume":16,"intvolume":"        16","isi":1,"author":[{"orcid":"0009-0003-9037-8831","first_name":"Marian","last_name":"Janik","full_name":"Janik, Marian","id":"396A1950-F248-11E8-B48F-1D18A9856A87"},{"id":"53f93ea2-803f-11ed-ab7e-b283135794ef","full_name":"Roux, Kevin Etienne Robert","last_name":"Roux","first_name":"Kevin Etienne Robert"},{"first_name":"Carla N","last_name":"Borja Espinosa","full_name":"Borja Espinosa, Carla N","id":"18777c01-896a-11ed-bdf8-e4851dc07d16"},{"first_name":"Oliver","last_name":"Sagi","id":"71616374-A8E9-11E9-A7CA-09ECE5697425","full_name":"Sagi, Oliver"},{"first_name":"Abdulhamid","last_name":"Baghdadi","full_name":"Baghdadi, Abdulhamid","id":"160D87FA-96B5-11E9-BF77-7626E6697425"},{"last_name":"Adletzberger","full_name":"Adletzberger, Thomas","id":"38756BB2-F248-11E8-B48F-1D18A9856A87","first_name":"Thomas"},{"first_name":"Stefano","last_name":"Calcaterra","full_name":"Calcaterra, Stefano"},{"full_name":"Botifoll, Marc","last_name":"Botifoll","first_name":"Marc"},{"first_name":"Alba","last_name":"Garzón Manjón","full_name":"Garzón Manjón, Alba"},{"last_name":"Arbiol","full_name":"Arbiol, Jordi","first_name":"Jordi"},{"full_name":"Chrastina, Daniel","last_name":"Chrastina","first_name":"Daniel"},{"first_name":"Giovanni","full_name":"Isella, Giovanni","last_name":"Isella"},{"first_name":"Ioan M.","last_name":"Pop","full_name":"Pop, Ioan M."},{"full_name":"Katsaros, Georgios","id":"38DB5788-F248-11E8-B48F-1D18A9856A87","last_name":"Katsaros","orcid":"0000-0001-8342-202X","first_name":"Georgios"}],"_id":"19401","external_id":{"pmid":["40025007"],"arxiv":["2407.03079"],"isi":["001434774800001"]},"year":"2025","article_number":"2103","ddc":["530"],"project":[{"name":"Integrated Germanium Quantum Technology","grant_number":"101069515","_id":"34c0acea-11ca-11ed-8bc3-8775e10fd452"},{"call_identifier":"FWF","name":"Towards scalable hut wire quantum devices","grant_number":"P32235","_id":"237B3DA4-32DE-11EA-91FC-C7463DDC885E"},{"name":"High impedance circuit quantum electrodynamics with hole spins","grant_number":"I05060","_id":"c0977eea-5a5b-11eb-8a69-a862db0cf4d1"},{"_id":"bd8bd29e-d553-11ed-ba76-f0070d4b237a","name":"Merging spin and superconducting qubits in planar Ge","grant_number":"P36507"},{"grant_number":"101034413","call_identifier":"H2020","name":"IST-BRIDGE: International postdoctoral program","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c"},{"_id":"3AC91DDA-15DF-11EA-824D-93A3E7B544D1","name":"FWF Open Access Fund","call_identifier":"FWF"}],"publisher":"Springer Nature","article_processing_charge":"Yes","date_published":"2025-03-01T00:00:00Z","pmid":1}]
