[{"date_created":"2021-02-15T14:17:25Z","type":"journal_article","article_type":"original","month":"09","article_processing_charge":"No","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","issue":"9","main_file_link":[{"url":"https://doi.org/10.1029/2017JC013591","open_access":"1"}],"intvolume":"       123","language":[{"iso":"eng"}],"volume":123,"date_published":"2018-09-01T00:00:00Z","_id":"9134","title":"Internal tide dissipation at topography: Triadic resonant instability equatorward and evanescent waves poleward of the critical latitude","year":"2018","oa_version":"Published Version","abstract":[{"text":"Several studies have shown the existence of a critical latitude where the dissipation of internal tides is strongly enhanced. Internal tides are internal waves generated by barotropic tidal currents impinging rough topography at the seafloor. Their dissipation and concomitant diapycnal mixing are believed to be important for water masses and the large‐scale ocean circulation. The purpose of this study is to clarify the physical processes at the origin of this strong latitudinal dependence of tidal energy dissipation. We find that different mechanisms are involved equatorward and poleward of the critical latitude. Triadic resonant instabilities are responsible for the dissipation of internal tides equatorward of the critical latitude. In particular, a dominant triad involving the primary internal tide and near‐inertial waves is key. At the critical latitude, the peak of energy dissipation is explained by both increased instability growth rates, and smaller scales of secondary waves thus more prone to break and dissipate their energy. Surprisingly, poleward of the critical latitude, the generation of evanescent waves appears to be crucial. Triadic instabilities have been widely studied, but the transfer of energy to evanescent waves has received comparatively little attention. Our work suggests that the nonlinear transfer of energy from the internal tide to evanescent waves (corresponding to the 2f‐pump mechanism described by Young et al., 2008, https://doi.org/10.1017/S0022112008001742) is an efficient mechanism to dissipate internal tide energy near and poleward of the critical latitude. The theoretical results are confirmed in idealized high‐resolution numerical simulations of a barotropic M2 tide impinging sinusoidal topography in a linearly stratified fluid.","lang":"eng"}],"page":"6136-6155","publication_status":"published","doi":"10.1029/2017jc013591","day":"01","extern":"1","publication":"Journal of Geophysical Research: Oceans","oa":1,"status":"public","publication_identifier":{"issn":["2169-9275"]},"citation":{"ieee":"O. Richet, J.-M. Chomaz, and C. J. Muller, “Internal tide dissipation at topography: Triadic resonant instability equatorward and evanescent waves poleward of the critical latitude,” <i>Journal of Geophysical Research: Oceans</i>, vol. 123, no. 9. American Geophysical Union, pp. 6136–6155, 2018.","chicago":"Richet, O., J.-M. Chomaz, and Caroline J Muller. “Internal Tide Dissipation at Topography: Triadic Resonant Instability Equatorward and Evanescent Waves Poleward of the Critical Latitude.” <i>Journal of Geophysical Research: Oceans</i>. American Geophysical Union, 2018. <a href=\"https://doi.org/10.1029/2017jc013591\">https://doi.org/10.1029/2017jc013591</a>.","ista":"Richet O, Chomaz J-M, Muller CJ. 2018. Internal tide dissipation at topography: Triadic resonant instability equatorward and evanescent waves poleward of the critical latitude. Journal of Geophysical Research: Oceans. 123(9), 6136–6155.","apa":"Richet, O., Chomaz, J.-M., &#38; Muller, C. J. (2018). Internal tide dissipation at topography: Triadic resonant instability equatorward and evanescent waves poleward of the critical latitude. <i>Journal of Geophysical Research: Oceans</i>. American Geophysical Union. <a href=\"https://doi.org/10.1029/2017jc013591\">https://doi.org/10.1029/2017jc013591</a>","short":"O. Richet, J.-M. Chomaz, C.J. Muller, Journal of Geophysical Research: Oceans 123 (2018) 6136–6155.","ama":"Richet O, Chomaz J-M, Muller CJ. Internal tide dissipation at topography: Triadic resonant instability equatorward and evanescent waves poleward of the critical latitude. <i>Journal of Geophysical Research: Oceans</i>. 2018;123(9):6136-6155. doi:<a href=\"https://doi.org/10.1029/2017jc013591\">10.1029/2017jc013591</a>","mla":"Richet, O., et al. “Internal Tide Dissipation at Topography: Triadic Resonant Instability Equatorward and Evanescent Waves Poleward of the Critical Latitude.” <i>Journal of Geophysical Research: Oceans</i>, vol. 123, no. 9, American Geophysical Union, 2018, pp. 6136–55, doi:<a href=\"https://doi.org/10.1029/2017jc013591\">10.1029/2017jc013591</a>."},"publisher":"American Geophysical Union","author":[{"last_name":"Richet","full_name":"Richet, O.","first_name":"O."},{"last_name":"Chomaz","full_name":"Chomaz, J.-M.","first_name":"J.-M."},{"full_name":"Muller, Caroline J","first_name":"Caroline J","orcid":"0000-0001-5836-5350","id":"f978ccb0-3f7f-11eb-b193-b0e2bd13182b","last_name":"Muller"}],"date_updated":"2022-01-24T12:39:03Z","quality_controlled":"1"},{"_id":"9135","date_published":"2018-03-20T00:00:00Z","year":"2018","title":"Acceleration of tropical cyclogenesis by self-aggregation feedbacks","type":"journal_article","date_created":"2021-02-15T14:18:16Z","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","article_processing_charge":"No","article_type":"original","month":"03","main_file_link":[{"url":"https://doi.org/10.1073/pnas.1719967115","open_access":"1"}],"issue":"12","volume":115,"language":[{"iso":"eng"}],"intvolume":"       115","publication":"Proceedings of the National Academy of Sciences","publication_identifier":{"issn":["0027-8424","1091-6490"]},"status":"public","oa":1,"author":[{"full_name":"Muller, Caroline J","first_name":"Caroline J","orcid":"0000-0001-5836-5350","id":"f978ccb0-3f7f-11eb-b193-b0e2bd13182b","last_name":"Muller"},{"full_name":"Romps, David M.","first_name":"David M.","last_name":"Romps"}],"date_updated":"2022-01-24T12:39:49Z","publisher":"Proceedings of the National Academy of Sciences","citation":{"chicago":"Muller, Caroline J, and David M. Romps. “Acceleration of Tropical Cyclogenesis by Self-Aggregation Feedbacks.” <i>Proceedings of the National Academy of Sciences</i>. Proceedings of the National Academy of Sciences, 2018. <a href=\"https://doi.org/10.1073/pnas.1719967115\">https://doi.org/10.1073/pnas.1719967115</a>.","ieee":"C. J. Muller and D. M. Romps, “Acceleration of tropical cyclogenesis by self-aggregation feedbacks,” <i>Proceedings of the National Academy of Sciences</i>, vol. 115, no. 12. Proceedings of the National Academy of Sciences, pp. 2930–2935, 2018.","ista":"Muller CJ, Romps DM. 2018. Acceleration of tropical cyclogenesis by self-aggregation feedbacks. Proceedings of the National Academy of Sciences. 115(12), 2930–2935.","short":"C.J. Muller, D.M. Romps, Proceedings of the National Academy of Sciences 115 (2018) 2930–2935.","apa":"Muller, C. J., &#38; Romps, D. M. (2018). Acceleration of tropical cyclogenesis by self-aggregation feedbacks. <i>Proceedings of the National Academy of Sciences</i>. Proceedings of the National Academy of Sciences. <a href=\"https://doi.org/10.1073/pnas.1719967115\">https://doi.org/10.1073/pnas.1719967115</a>","ama":"Muller CJ, Romps DM. Acceleration of tropical cyclogenesis by self-aggregation feedbacks. <i>Proceedings of the National Academy of Sciences</i>. 2018;115(12):2930-2935. doi:<a href=\"https://doi.org/10.1073/pnas.1719967115\">10.1073/pnas.1719967115</a>","mla":"Muller, Caroline J., and David M. Romps. “Acceleration of Tropical Cyclogenesis by Self-Aggregation Feedbacks.” <i>Proceedings of the National Academy of Sciences</i>, vol. 115, no. 12, Proceedings of the National Academy of Sciences, 2018, pp. 2930–35, doi:<a href=\"https://doi.org/10.1073/pnas.1719967115\">10.1073/pnas.1719967115</a>."},"quality_controlled":"1","oa_version":"Published Version","publication_status":"published","keyword":["Multidisciplinary"],"page":"2930-2935","abstract":[{"text":"Idealized simulations of tropical moist convection have revealed that clouds can spontaneously clump together in a process called self-aggregation. This results in a state where a moist cloudy region with intense deep convection is surrounded by extremely dry subsiding air devoid of deep convection. Because of the idealized settings of the simulations where it was discovered, the relevance of self-aggregation to the real world is still debated. Here, we show that self-aggregation feedbacks play a leading-order role in the spontaneous genesis of tropical cyclones in cloud-resolving simulations. Those feedbacks accelerate the cyclogenesis process by a factor of 2, and the feedbacks contributing to the cyclone formation show qualitative and quantitative agreement with the self-aggregation process. Once the cyclone is formed, wind-induced surface heat exchange (WISHE) effects dominate, although we find that self-aggregation feedbacks have a small but nonnegligible contribution to the maintenance of the mature cyclone. Our results suggest that self-aggregation, and the framework developed for its study, can help shed more light into the physical processes leading to cyclogenesis and cyclone intensification. In particular, our results point out the importance of the longwave radiative cooling outside the cyclone.","lang":"eng"}],"day":"20","doi":"10.1073/pnas.1719967115","extern":"1"},{"_id":"9136","date_published":"2018-08-01T00:00:00Z","year":"2018","title":"Scaling precipitation extremes with temperature in the Mediterranean: Past climate assessment and projection in anthropogenic scenarios","type":"journal_article","date_created":"2021-02-15T14:18:53Z","article_processing_charge":"No","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","article_type":"original","month":"08","main_file_link":[{"url":"https://doi.org/10.1007/s00382-016-3083-x","open_access":"1"}],"issue":"3","volume":51,"language":[{"iso":"eng"}],"intvolume":"        51","publication":"Climate Dynamics","publication_identifier":{"issn":["0930-7575","1432-0894"]},"status":"public","oa":1,"author":[{"last_name":"Drobinski","first_name":"Philippe","full_name":"Drobinski, Philippe"},{"first_name":"Nicolas Da","full_name":"Silva, Nicolas Da","last_name":"Silva"},{"full_name":"Panthou, Gérémy","first_name":"Gérémy","last_name":"Panthou"},{"full_name":"Bastin, Sophie","first_name":"Sophie","last_name":"Bastin"},{"full_name":"Muller, Caroline J","first_name":"Caroline J","last_name":"Muller","id":"f978ccb0-3f7f-11eb-b193-b0e2bd13182b","orcid":"0000-0001-5836-5350"},{"first_name":"Bodo","full_name":"Ahrens, Bodo","last_name":"Ahrens"},{"full_name":"Borga, Marco","first_name":"Marco","last_name":"Borga"},{"last_name":"Conte","full_name":"Conte, Dario","first_name":"Dario"},{"full_name":"Fosser, Giorgia","first_name":"Giorgia","last_name":"Fosser"},{"last_name":"Giorgi","full_name":"Giorgi, Filippo","first_name":"Filippo"},{"full_name":"Güttler, Ivan","first_name":"Ivan","last_name":"Güttler"},{"first_name":"Vassiliki","full_name":"Kotroni, Vassiliki","last_name":"Kotroni"},{"first_name":"Laurent","full_name":"Li, Laurent","last_name":"Li"},{"first_name":"Efrat","full_name":"Morin, Efrat","last_name":"Morin"},{"first_name":"Bariş","full_name":"Önol, Bariş","last_name":"Önol"},{"first_name":"Pere","full_name":"Quintana-Segui, Pere","last_name":"Quintana-Segui"},{"last_name":"Romera","first_name":"Raquel","full_name":"Romera, Raquel"},{"last_name":"Torma","full_name":"Torma, Csaba Zsolt","first_name":"Csaba Zsolt"}],"date_updated":"2022-01-24T12:40:40Z","citation":{"chicago":"Drobinski, Philippe, Nicolas Da Silva, Gérémy Panthou, Sophie Bastin, Caroline J Muller, Bodo Ahrens, Marco Borga, et al. “Scaling Precipitation Extremes with Temperature in the Mediterranean: Past Climate Assessment and Projection in Anthropogenic Scenarios.” <i>Climate Dynamics</i>. Springer Nature, 2018. <a href=\"https://doi.org/10.1007/s00382-016-3083-x\">https://doi.org/10.1007/s00382-016-3083-x</a>.","ieee":"P. Drobinski <i>et al.</i>, “Scaling precipitation extremes with temperature in the Mediterranean: Past climate assessment and projection in anthropogenic scenarios,” <i>Climate Dynamics</i>, vol. 51, no. 3. Springer Nature, pp. 1237–1257, 2018.","ista":"Drobinski P, Silva ND, Panthou G, Bastin S, Muller CJ, Ahrens B, Borga M, Conte D, Fosser G, Giorgi F, Güttler I, Kotroni V, Li L, Morin E, Önol B, Quintana-Segui P, Romera R, Torma CZ. 2018. Scaling precipitation extremes with temperature in the Mediterranean: Past climate assessment and projection in anthropogenic scenarios. Climate Dynamics. 51(3), 1237–1257.","apa":"Drobinski, P., Silva, N. D., Panthou, G., Bastin, S., Muller, C. J., Ahrens, B., … Torma, C. Z. (2018). Scaling precipitation extremes with temperature in the Mediterranean: Past climate assessment and projection in anthropogenic scenarios. <i>Climate Dynamics</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s00382-016-3083-x\">https://doi.org/10.1007/s00382-016-3083-x</a>","short":"P. Drobinski, N.D. Silva, G. Panthou, S. Bastin, C.J. Muller, B. Ahrens, M. Borga, D. Conte, G. Fosser, F. Giorgi, I. Güttler, V. Kotroni, L. Li, E. Morin, B. Önol, P. Quintana-Segui, R. Romera, C.Z. Torma, Climate Dynamics 51 (2018) 1237–1257.","ama":"Drobinski P, Silva ND, Panthou G, et al. Scaling precipitation extremes with temperature in the Mediterranean: Past climate assessment and projection in anthropogenic scenarios. <i>Climate Dynamics</i>. 2018;51(3):1237-1257. doi:<a href=\"https://doi.org/10.1007/s00382-016-3083-x\">10.1007/s00382-016-3083-x</a>","mla":"Drobinski, Philippe, et al. “Scaling Precipitation Extremes with Temperature in the Mediterranean: Past Climate Assessment and Projection in Anthropogenic Scenarios.” <i>Climate Dynamics</i>, vol. 51, no. 3, Springer Nature, 2018, pp. 1237–57, doi:<a href=\"https://doi.org/10.1007/s00382-016-3083-x\">10.1007/s00382-016-3083-x</a>."},"publisher":"Springer Nature","quality_controlled":"1","oa_version":"Published Version","publication_status":"published","keyword":["Atmospheric Science"],"page":"1237-1257","abstract":[{"lang":"eng","text":"In this study we investigate the scaling of precipitation extremes with temperature in the Mediterranean region by assessing against observations the present day and future regional climate simulations performed in the frame of the HyMeX and MED-CORDEX programs. Over the 1979–2008 period, despite differences in quantitative precipitation simulation across the various models, the change in precipitation extremes with respect to temperature is robust and consistent. The spatial variability of the temperature–precipitation extremes relationship displays a hook shape across the Mediterranean, with negative slope at high temperatures and a slope following Clausius–Clapeyron (CC)-scaling at low temperatures. The temperature at which the slope of the temperature–precipitation extreme relation sharply changes (or temperature break), ranges from about 20 °C in the western Mediterranean to <10 °C in Greece. In addition, this slope is always negative in the arid regions of the Mediterranean. The scaling of the simulated precipitation extremes is insensitive to ocean–atmosphere coupling, while it depends very weakly on the resolution at high temperatures for short precipitation accumulation times. In future climate scenario simulations covering the 2070–2100 period, the temperature break shifts to higher temperatures by a value which is on average the mean regional temperature change due to global warming. The slope of the simulated future temperature–precipitation extremes relationship is close to CC-scaling at temperatures below the temperature break, while at high temperatures, the negative slope is close, but somewhat flatter or steeper, than in the current climate depending on the model. Overall, models predict more intense precipitation extremes in the future. Adjusting the temperature–precipitation extremes relationship in the present climate using the CC law and the temperature shift in the future allows the recovery of the temperature–precipitation extremes relationship in the future climate. This implies negligible regional changes of relative humidity in the future despite the large warming and drying over the Mediterranean. This suggests that the Mediterranean Sea is the primary source of moisture which counteracts the drying and warming impacts on relative humidity in parts of the Mediterranean region."}],"day":"01","doi":"10.1007/s00382-016-3083-x","extern":"1"},{"publication_status":"published","ddc":["570"],"page":"11","oa_version":"Published Version","department":[{"_id":"JoDa"}],"day":"30","doi":"10.20388/omp2018.00s1.001","publication_identifier":{"eissn":["2500-2295"],"issn":["2500-2287"]},"status":"public","oa":1,"scopus_import":"1","publication":"Opera Medica et Physiologica","alternative_title":["Molecular and cellular neuroscience"],"quality_controlled":"1","date_updated":"2026-06-18T19:43:22Z","author":[{"id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87","last_name":"Danzl","orcid":"0000-0001-8559-3973","full_name":"Danzl, Johann G","first_name":"Johann G"}],"citation":{"ieee":"J. G. Danzl, “Diffraction-unlimited optical imaging for synaptic physiology,” <i>Opera Medica et Physiologica</i>, vol. 4, no. S1. Lobachevsky State University of Nizhny Novgorod, p. 11, 2018.","chicago":"Danzl, Johann G. “Diffraction-Unlimited Optical Imaging for Synaptic Physiology.” <i>Opera Medica et Physiologica</i>. Lobachevsky State University of Nizhny Novgorod, 2018. <a href=\"https://doi.org/10.20388/omp2018.00s1.001\">https://doi.org/10.20388/omp2018.00s1.001</a>.","ista":"Danzl JG. 2018. Diffraction-unlimited optical imaging for synaptic physiology. Opera Medica et Physiologica. 4(S1), 11.","short":"J.G. Danzl, Opera Medica et Physiologica 4 (2018) 11.","apa":"Danzl, J. G. (2018). Diffraction-unlimited optical imaging for synaptic physiology. <i>Opera Medica et Physiologica</i>. Lobachevsky State University of Nizhny Novgorod. <a href=\"https://doi.org/10.20388/omp2018.00s1.001\">https://doi.org/10.20388/omp2018.00s1.001</a>","ama":"Danzl JG. Diffraction-unlimited optical imaging for synaptic physiology. <i>Opera Medica et Physiologica</i>. 2018;4(S1):11. doi:<a href=\"https://doi.org/10.20388/omp2018.00s1.001\">10.20388/omp2018.00s1.001</a>","mla":"Danzl, Johann G. “Diffraction-Unlimited Optical Imaging for Synaptic Physiology.” <i>Opera Medica et Physiologica</i>, vol. 4, no. S1, Lobachevsky State University of Nizhny Novgorod, 2018, p. 11, doi:<a href=\"https://doi.org/10.20388/omp2018.00s1.001\">10.20388/omp2018.00s1.001</a>."},"publisher":"Lobachevsky State University of Nizhny Novgorod","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_processing_charge":"No","month":"06","article_type":"letter_note","type":"journal_article","date_created":"2021-03-07T23:01:25Z","volume":4,"intvolume":"         4","language":[{"iso":"eng"}],"main_file_link":[{"open_access":"1","url":"http://operamedphys.org/content/molecular-and-cellular-neuroscience"}],"issue":"S1","_id":"9229","date_published":"2018-06-30T00:00:00Z","year":"2018","title":"Diffraction-unlimited optical imaging for synaptic physiology"},{"doi":"10.1073/pnas.1713333115","has_accepted_license":"1","day":"15","department":[{"_id":"DaZi"}],"extern":"1","oa_version":"Published Version","page":"E4720-E4729","abstract":[{"text":"The DEMETER (DME) DNA glycosylase catalyzes genome-wide DNA demethylation and is required for endosperm genomic imprinting and embryo viability. Targets of DME-mediated DNA demethylation reside in small, euchromatic, AT-rich transposons and at the boundaries of large transposons, but how DME interacts with these diverse chromatin states is unknown. The STRUCTURE SPECIFIC RECOGNITION PROTEIN 1 (SSRP1) subunit of the chromatin remodeler FACT (facilitates chromatin transactions), was previously shown to be involved in the DME-dependent regulation of genomic imprinting in Arabidopsis endosperm. Therefore, to investigate the interaction between DME and chromatin, we focused on the activity of the two FACT subunits, SSRP1 and SUPPRESSOR of TY16 (SPT16), during reproduction in Arabidopsis. We found that FACT colocalizes with nuclear DME in vivo, and that DME has two classes of target sites, the first being euchromatic and accessible to DME, but the second, representing over half of DME targets, requiring the action of FACT for DME-mediated DNA demethylation genome-wide. Our results show that the FACT-dependent DME targets are GC-rich heterochromatin domains with high nucleosome occupancy enriched with H3K9me2 and H3K27me1. Further, we demonstrate that heterochromatin-associated linker histone H1 specifically mediates the requirement for FACT at a subset of DME-target loci. Overall, our results demonstrate that FACT is required for DME targeting by facilitating its access to heterochromatin.","lang":"eng"}],"publication_status":"published","keyword":["Multidisciplinary"],"ddc":["580"],"citation":{"ista":"Frost JM, Kim MY, Park GT, Hsieh P-H, Nakamura M, Lin SJH, Yoo H, Choi J, Ikeda Y, Kinoshita T, Choi Y, Zilberman D, Fischer RL. 2018. FACT complex is required for DNA demethylation at heterochromatin during reproduction in Arabidopsis. Proceedings of the National Academy of Sciences. 115(20), E4720–E4729.","ieee":"J. M. Frost <i>et al.</i>, “FACT complex is required for DNA demethylation at heterochromatin during reproduction in Arabidopsis,” <i>Proceedings of the National Academy of Sciences</i>, vol. 115, no. 20. National Academy of Sciences, pp. E4720–E4729, 2018.","chicago":"Frost, Jennifer M., M. Yvonne Kim, Guen Tae Park, Ping-Hung Hsieh, Miyuki Nakamura, Samuel J. H. Lin, Hyunjin Yoo, et al. “FACT Complex Is Required for DNA Demethylation at Heterochromatin during Reproduction in Arabidopsis.” <i>Proceedings of the National Academy of Sciences</i>. National Academy of Sciences, 2018. <a href=\"https://doi.org/10.1073/pnas.1713333115\">https://doi.org/10.1073/pnas.1713333115</a>.","apa":"Frost, J. M., Kim, M. Y., Park, G. T., Hsieh, P.-H., Nakamura, M., Lin, S. J. H., … Fischer, R. L. (2018). FACT complex is required for DNA demethylation at heterochromatin during reproduction in Arabidopsis. <i>Proceedings of the National Academy of Sciences</i>. National Academy of Sciences. <a href=\"https://doi.org/10.1073/pnas.1713333115\">https://doi.org/10.1073/pnas.1713333115</a>","short":"J.M. Frost, M.Y. Kim, G.T. Park, P.-H. Hsieh, M. Nakamura, S.J.H. Lin, H. Yoo, J. Choi, Y. Ikeda, T. Kinoshita, Y. Choi, D. Zilberman, R.L. Fischer, Proceedings of the National Academy of Sciences 115 (2018) E4720–E4729.","ama":"Frost JM, Kim MY, Park GT, et al. FACT complex is required for DNA demethylation at heterochromatin during reproduction in Arabidopsis. <i>Proceedings of the National Academy of Sciences</i>. 2018;115(20):E4720-E4729. doi:<a href=\"https://doi.org/10.1073/pnas.1713333115\">10.1073/pnas.1713333115</a>","mla":"Frost, Jennifer M., et al. “FACT Complex Is Required for DNA Demethylation at Heterochromatin during Reproduction in Arabidopsis.” <i>Proceedings of the National Academy of Sciences</i>, vol. 115, no. 20, National Academy of Sciences, 2018, pp. E4720–29, doi:<a href=\"https://doi.org/10.1073/pnas.1713333115\">10.1073/pnas.1713333115</a>."},"publisher":"National Academy of Sciences","related_material":{"link":[{"url":"https://doi.org/10.1101/187674 ","relation":"earlier_version"}]},"author":[{"full_name":"Frost, Jennifer M.","first_name":"Jennifer M.","last_name":"Frost"},{"full_name":"Kim, M. Yvonne","first_name":"M. Yvonne","last_name":"Kim"},{"last_name":"Park","full_name":"Park, Guen Tae","first_name":"Guen Tae"},{"last_name":"Hsieh","first_name":"Ping-Hung","full_name":"Hsieh, Ping-Hung"},{"first_name":"Miyuki","full_name":"Nakamura, Miyuki","last_name":"Nakamura"},{"full_name":"Lin, Samuel J. H.","first_name":"Samuel J. H.","last_name":"Lin"},{"full_name":"Yoo, Hyunjin","first_name":"Hyunjin","last_name":"Yoo"},{"full_name":"Choi, Jaemyung","first_name":"Jaemyung","last_name":"Choi"},{"first_name":"Yoko","full_name":"Ikeda, Yoko","last_name":"Ikeda"},{"first_name":"Tetsu","full_name":"Kinoshita, Tetsu","last_name":"Kinoshita"},{"last_name":"Choi","full_name":"Choi, Yeonhee","first_name":"Yeonhee"},{"full_name":"Zilberman, Daniel","first_name":"Daniel","id":"6973db13-dd5f-11ea-814e-b3e5455e9ed1","last_name":"Zilberman","orcid":"0000-0002-0123-8649"},{"last_name":"Fischer","full_name":"Fischer, Robert L.","first_name":"Robert L."}],"date_updated":"2021-12-14T07:53:40Z","pmid":1,"quality_controlled":"1","publication":"Proceedings of the National Academy of Sciences","scopus_import":"1","oa":1,"publication_identifier":{"issn":["0027-8424"],"eissn":["1091-6490"]},"status":"public","issue":"20","intvolume":"       115","language":[{"iso":"eng"}],"volume":115,"date_created":"2021-06-07T06:11:28Z","type":"journal_article","article_type":"original","file":[{"date_created":"2021-06-07T06:16:38Z","creator":"asandaue","access_level":"open_access","file_size":3045260,"content_type":"application/pdf","checksum":"810260dc0e3cc3033e15c19ad0dc123e","file_id":"9472","success":1,"date_updated":"2021-06-07T06:16:38Z","relation":"main_file","file_name":"2018_PNAS_Frost.pdf"}],"month":"05","article_processing_charge":"No","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","external_id":{"pmid":["29712855"]},"file_date_updated":"2021-06-07T06:16:38Z","title":"FACT complex is required for DNA demethylation at heterochromatin during reproduction in Arabidopsis","tmp":{"name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","image":"/images/cc_by_nc_nd.png","short":"CC BY-NC-ND (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode"},"year":"2018","date_published":"2018-05-15T00:00:00Z","_id":"9471"},{"issue":"3","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1801.09278"}],"intvolume":"         2","language":[{"iso":"eng"}],"volume":2,"date_created":"2018-12-11T11:44:36Z","type":"journal_article","month":"03","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","external_id":{"arxiv":["1801.09278"]},"arxiv":1,"title":"Collisional charging of individual submillimeter particles: Using ultrasonic levitation to initiate and track charge transfer","year":"2018","date_published":"2018-03-29T00:00:00Z","_id":"95","article_number":"035602","doi":"10.1103/PhysRevMaterials.2.035602","publist_id":"7959","day":"29","extern":"1","oa_version":"Preprint","abstract":[{"text":"Electrostatic charging of insulating fine particles can be responsible for numerous phenomena ranging from lightning in volcanic plumes to dust explosions. However, even basic aspects of how fine particles become charged are still unclear. Studying particle charging is challenging because it usually involves the complexities associated with many-particle collisions. To address these issues, we introduce a method based on acoustic levitation, which makes it possible to initiate sequences of repeated collisions of a single submillimeter particle with a flat plate, and to precisely measure the particle charge in situ after each collision. We show that collisional charge transfer between insulators is dependent on the hydrophobicity of the contacting surfaces. We use glass, which we modify by attaching nonpolar molecules to the particle, the plate, or both. We find that hydrophilic surfaces develop significant positive charges after contacting hydrophobic surfaces. Moreover, we demonstrate that charging between a hydrophilic and a hydrophobic surface is suppressed in an acidic environment and enhanced in a basic one. Application of an electric field during each collision is found to modify the charge transfer, again depending on surface hydrophobicity. We discuss these results within the context of contact charging due to ion transfer, and we show that they lend strong support to OH− ions as the charge carriers.","lang":"eng"}],"publication_status":"published","citation":{"chicago":"Lee, Victor, Nicole James, Scott R Waitukaitis, and Heinrich Jaeger. “Collisional Charging of Individual Submillimeter Particles: Using Ultrasonic Levitation to Initiate and Track Charge Transfer.” <i>Physical Review Materials</i>. American Physical Society, 2018. <a href=\"https://doi.org/10.1103/PhysRevMaterials.2.035602\">https://doi.org/10.1103/PhysRevMaterials.2.035602</a>.","ista":"Lee V, James N, Waitukaitis SR, Jaeger H. 2018. Collisional charging of individual submillimeter particles: Using ultrasonic levitation to initiate and track charge transfer. Physical Review Materials. 2(3), 035602.","ieee":"V. Lee, N. James, S. R. Waitukaitis, and H. Jaeger, “Collisional charging of individual submillimeter particles: Using ultrasonic levitation to initiate and track charge transfer,” <i>Physical Review Materials</i>, vol. 2, no. 3. American Physical Society, 2018.","apa":"Lee, V., James, N., Waitukaitis, S. R., &#38; Jaeger, H. (2018). Collisional charging of individual submillimeter particles: Using ultrasonic levitation to initiate and track charge transfer. <i>Physical Review Materials</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevMaterials.2.035602\">https://doi.org/10.1103/PhysRevMaterials.2.035602</a>","short":"V. Lee, N. James, S.R. Waitukaitis, H. Jaeger, Physical Review Materials 2 (2018).","ama":"Lee V, James N, Waitukaitis SR, Jaeger H. Collisional charging of individual submillimeter particles: Using ultrasonic levitation to initiate and track charge transfer. <i>Physical Review Materials</i>. 2018;2(3). doi:<a href=\"https://doi.org/10.1103/PhysRevMaterials.2.035602\">10.1103/PhysRevMaterials.2.035602</a>","mla":"Lee, Victor, et al. “Collisional Charging of Individual Submillimeter Particles: Using Ultrasonic Levitation to Initiate and Track Charge Transfer.” <i>Physical Review Materials</i>, vol. 2, no. 3, 035602, American Physical Society, 2018, doi:<a href=\"https://doi.org/10.1103/PhysRevMaterials.2.035602\">10.1103/PhysRevMaterials.2.035602</a>."},"publisher":"American Physical Society","author":[{"first_name":"Victor","full_name":"Lee, Victor","last_name":"Lee"},{"first_name":"Nicole","full_name":"James, Nicole","last_name":"James"},{"first_name":"Scott R","full_name":"Waitukaitis, Scott R","last_name":"Waitukaitis","orcid":"0000-0002-2299-3176","id":"3A1FFC16-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Jaeger, Heinrich","first_name":"Heinrich","last_name":"Jaeger"}],"date_updated":"2021-01-12T08:22:09Z","quality_controlled":"1","publication":"Physical Review Materials","oa":1,"status":"public"},{"oa":1,"publication_identifier":{"issn":["1042-9832"],"eissn":["1098-2418"]},"status":"public","publication":"Random Structures and Algorithms","scopus_import":"1","quality_controlled":"1","publisher":"Wiley","citation":{"mla":"Ferber, Asaf, et al. “Counting Hamilton Cycles in Sparse Random Directed Graphs.” <i>Random Structures and Algorithms</i>, vol. 53, no. 4, Wiley, 2018, pp. 592–603, doi:<a href=\"https://doi.org/10.1002/rsa.20815\">10.1002/rsa.20815</a>.","ama":"Ferber A, Kwan MA, Sudakov B. Counting Hamilton cycles in sparse random directed graphs. <i>Random Structures and Algorithms</i>. 2018;53(4):592-603. doi:<a href=\"https://doi.org/10.1002/rsa.20815\">10.1002/rsa.20815</a>","apa":"Ferber, A., Kwan, M. A., &#38; Sudakov, B. (2018). Counting Hamilton cycles in sparse random directed graphs. <i>Random Structures and Algorithms</i>. Wiley. <a href=\"https://doi.org/10.1002/rsa.20815\">https://doi.org/10.1002/rsa.20815</a>","short":"A. Ferber, M.A. Kwan, B. Sudakov, Random Structures and Algorithms 53 (2018) 592–603.","ista":"Ferber A, Kwan MA, Sudakov B. 2018. Counting Hamilton cycles in sparse random directed graphs. Random Structures and Algorithms. 53(4), 592–603.","ieee":"A. Ferber, M. A. Kwan, and B. Sudakov, “Counting Hamilton cycles in sparse random directed graphs,” <i>Random Structures and Algorithms</i>, vol. 53, no. 4. Wiley, pp. 592–603, 2018.","chicago":"Ferber, Asaf, Matthew Alan Kwan, and Benny Sudakov. “Counting Hamilton Cycles in Sparse Random Directed Graphs.” <i>Random Structures and Algorithms</i>. Wiley, 2018. <a href=\"https://doi.org/10.1002/rsa.20815\">https://doi.org/10.1002/rsa.20815</a>."},"author":[{"last_name":"Ferber","full_name":"Ferber, Asaf","first_name":"Asaf"},{"orcid":"0000-0002-4003-7567","last_name":"Kwan","id":"5fca0887-a1db-11eb-95d1-ca9d5e0453b3","full_name":"Kwan, Matthew Alan","first_name":"Matthew Alan"},{"full_name":"Sudakov, Benny","first_name":"Benny","last_name":"Sudakov"}],"date_updated":"2023-02-23T14:01:03Z","page":"592-603","abstract":[{"lang":"eng","text":"Let D(n,p) be the random directed graph on n vertices where each of the n(n-1) possible arcs is present independently with probability p. A celebrated result of Frieze shows that if p≥(logn+ω(1))/n then D(n,p) typically has a directed Hamilton cycle, and this is best possible. In this paper, we obtain a strengthening of this result, showing that under the same condition, the number of directed Hamilton cycles in D(n,p) is typically n!(p(1+o(1)))n. We also prove a hitting-time version of this statement, showing that in the random directed graph process, as soon as every vertex has in-/out-degrees at least 1, there are typically n!(logn/n(1+o(1)))n directed Hamilton cycles."}],"publication_status":"published","oa_version":"Preprint","extern":"1","doi":"10.1002/rsa.20815","day":"01","date_published":"2018-12-01T00:00:00Z","_id":"9565","title":"Counting Hamilton cycles in sparse random directed graphs","arxiv":1,"year":"2018","external_id":{"arxiv":["1708.07746"]},"article_type":"original","month":"12","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","article_processing_charge":"No","date_created":"2021-06-18T12:06:28Z","type":"journal_article","intvolume":"        53","language":[{"iso":"eng"}],"volume":53,"issue":"4","main_file_link":[{"url":"https://arxiv.org/abs/1708.07746","open_access":"1"}]},{"quality_controlled":"1","author":[{"last_name":"Krivelevich","full_name":"Krivelevich, Michael","first_name":"Michael"},{"last_name":"Kwan","orcid":"0000-0002-4003-7567","id":"5fca0887-a1db-11eb-95d1-ca9d5e0453b3","full_name":"Kwan, Matthew Alan","first_name":"Matthew Alan"},{"last_name":"Loh","first_name":"Po‐Shen","full_name":"Loh, Po‐Shen"},{"last_name":"Sudakov","full_name":"Sudakov, Benny","first_name":"Benny"}],"date_updated":"2023-02-23T14:01:07Z","citation":{"short":"M. Krivelevich, M.A. Kwan, P. Loh, B. Sudakov, Random Structures and Algorithms 53 (2018) 692–716.","apa":"Krivelevich, M., Kwan, M. A., Loh, P., &#38; Sudakov, B. (2018). The random k‐matching‐free process. <i>Random Structures and Algorithms</i>. Wiley. <a href=\"https://doi.org/10.1002/rsa.20814\">https://doi.org/10.1002/rsa.20814</a>","ieee":"M. Krivelevich, M. A. Kwan, P. Loh, and B. Sudakov, “The random k‐matching‐free process,” <i>Random Structures and Algorithms</i>, vol. 53, no. 4. Wiley, pp. 692–716, 2018.","chicago":"Krivelevich, Michael, Matthew Alan Kwan, Po‐Shen Loh, and Benny Sudakov. “The Random K‐matching‐free Process.” <i>Random Structures and Algorithms</i>. Wiley, 2018. <a href=\"https://doi.org/10.1002/rsa.20814\">https://doi.org/10.1002/rsa.20814</a>.","ista":"Krivelevich M, Kwan MA, Loh P, Sudakov B. 2018. The random k‐matching‐free process. Random Structures and Algorithms. 53(4), 692–716.","mla":"Krivelevich, Michael, et al. “The Random K‐matching‐free Process.” <i>Random Structures and Algorithms</i>, vol. 53, no. 4, Wiley, 2018, pp. 692–716, doi:<a href=\"https://doi.org/10.1002/rsa.20814\">10.1002/rsa.20814</a>.","ama":"Krivelevich M, Kwan MA, Loh P, Sudakov B. The random k‐matching‐free process. <i>Random Structures and Algorithms</i>. 2018;53(4):692-716. doi:<a href=\"https://doi.org/10.1002/rsa.20814\">10.1002/rsa.20814</a>"},"publisher":"Wiley","publication_identifier":{"eissn":["1098-2418"],"issn":["1042-9832"]},"status":"public","oa":1,"publication":"Random Structures and Algorithms","scopus_import":"1","extern":"1","day":"01","doi":"10.1002/rsa.20814","publication_status":"published","page":"692-716","abstract":[{"text":"Let P be a graph property which is preserved by removal of edges, and consider the random graph process that starts with the empty n-vertex graph and then adds edges one-by-one, each chosen uniformly at random subject to the constraint that P is not violated. These types of random processes have been the subject of extensive research over the last 20 years, having striking applications in extremal combinatorics, and leading to the discovery of important probabilistic tools. In this paper we consider the k-matching-free process, where P is the property of not containing a matching of size k. We are able to analyse the behaviour of this process for a wide range of values of k; in particular we prove that if k=o(n) or if n−2k=o(n−−√/logn) then this process is likely to terminate in a k-matching-free graph with the maximum possible number of edges, as characterised by Erdős and Gallai. We also show that these bounds on k are essentially best possible, and we make a first step towards understanding the behaviour of the process in the intermediate regime.","lang":"eng"}],"oa_version":"Preprint","year":"2018","title":"The random k‐matching‐free process","arxiv":1,"external_id":{"arxiv":["1708.01054"]},"_id":"9567","date_published":"2018-12-01T00:00:00Z","volume":53,"language":[{"iso":"eng"}],"intvolume":"        53","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1708.01054"}],"issue":"4","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","article_processing_charge":"No","article_type":"original","month":"12","type":"journal_article","date_created":"2021-06-18T12:37:40Z"},{"date_created":"2021-06-18T12:47:25Z","type":"journal_article","month":"03","article_type":"original","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","article_processing_charge":"No","issue":"2","main_file_link":[{"url":"https://arxiv.org/abs/1607.04981","open_access":"1"}],"language":[{"iso":"eng"}],"intvolume":"        52","volume":52,"date_published":"2018-03-01T00:00:00Z","_id":"9568","external_id":{"arxiv":["1607.04981"]},"arxiv":1,"title":"Intercalates and discrepancy in random Latin squares","year":"2018","oa_version":"Preprint","abstract":[{"text":"An intercalate in a Latin square is a 2×2 Latin subsquare. Let N be the number of intercalates in a uniformly random n×n Latin square. We prove that asymptotically almost surely N≥(1−o(1))n2/4, and that EN≤(1+o(1))n2/2 (therefore asymptotically almost surely N≤fn2 for any f→∞). This significantly improves the previous best lower and upper bounds. We also give an upper tail bound for the number of intercalates in two fixed rows of a random Latin square. In addition, we discuss a problem of Linial and Luria on low-discrepancy Latin squares.","lang":"eng"}],"page":"181-196","publication_status":"published","doi":"10.1002/rsa.20742","day":"01","extern":"1","scopus_import":"1","publication":"Random Structures and Algorithms","oa":1,"status":"public","publication_identifier":{"eissn":["1098-2418"],"issn":["1042-9832"]},"publisher":"Wiley","citation":{"mla":"Kwan, Matthew Alan, and Benny Sudakov. “Intercalates and Discrepancy in Random Latin Squares.” <i>Random Structures and Algorithms</i>, vol. 52, no. 2, Wiley, 2018, pp. 181–96, doi:<a href=\"https://doi.org/10.1002/rsa.20742\">10.1002/rsa.20742</a>.","ama":"Kwan MA, Sudakov B. Intercalates and discrepancy in random Latin squares. <i>Random Structures and Algorithms</i>. 2018;52(2):181-196. doi:<a href=\"https://doi.org/10.1002/rsa.20742\">10.1002/rsa.20742</a>","short":"M.A. Kwan, B. Sudakov, Random Structures and Algorithms 52 (2018) 181–196.","apa":"Kwan, M. A., &#38; Sudakov, B. (2018). Intercalates and discrepancy in random Latin squares. <i>Random Structures and Algorithms</i>. Wiley. <a href=\"https://doi.org/10.1002/rsa.20742\">https://doi.org/10.1002/rsa.20742</a>","chicago":"Kwan, Matthew Alan, and Benny Sudakov. “Intercalates and Discrepancy in Random Latin Squares.” <i>Random Structures and Algorithms</i>. Wiley, 2018. <a href=\"https://doi.org/10.1002/rsa.20742\">https://doi.org/10.1002/rsa.20742</a>.","ieee":"M. A. Kwan and B. Sudakov, “Intercalates and discrepancy in random Latin squares,” <i>Random Structures and Algorithms</i>, vol. 52, no. 2. Wiley, pp. 181–196, 2018.","ista":"Kwan MA, Sudakov B. 2018. Intercalates and discrepancy in random Latin squares. Random Structures and Algorithms. 52(2), 181–196."},"date_updated":"2023-02-23T14:01:09Z","author":[{"full_name":"Kwan, Matthew Alan","first_name":"Matthew Alan","id":"5fca0887-a1db-11eb-95d1-ca9d5e0453b3","last_name":"Kwan","orcid":"0000-0002-4003-7567"},{"first_name":"Benny","full_name":"Sudakov, Benny","last_name":"Sudakov"}],"quality_controlled":"1"},{"_id":"9587","date_published":"2018-05-01T00:00:00Z","external_id":{"arxiv":["1703.09946"]},"year":"2018","arxiv":1,"title":"Non-trivially intersecting multi-part families","type":"journal_article","date_created":"2021-06-22T11:42:48Z","article_processing_charge":"No","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","month":"05","article_type":"original","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1703.09946"}],"volume":156,"intvolume":"       156","language":[{"iso":"eng"}],"publication":"Journal of Combinatorial Theory Series A","scopus_import":"1","status":"public","publication_identifier":{"issn":["0097-3165"]},"oa":1,"date_updated":"2023-02-23T14:01:55Z","author":[{"full_name":"Kwan, Matthew Alan","first_name":"Matthew Alan","id":"5fca0887-a1db-11eb-95d1-ca9d5e0453b3","orcid":"0000-0002-4003-7567","last_name":"Kwan"},{"last_name":"Sudakov","full_name":"Sudakov, Benny","first_name":"Benny"},{"first_name":"Pedro","full_name":"Vieira, Pedro","last_name":"Vieira"}],"citation":{"apa":"Kwan, M. A., Sudakov, B., &#38; Vieira, P. (2018). Non-trivially intersecting multi-part families. <i>Journal of Combinatorial Theory Series A</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.jcta.2017.12.001\">https://doi.org/10.1016/j.jcta.2017.12.001</a>","short":"M.A. Kwan, B. Sudakov, P. Vieira, Journal of Combinatorial Theory Series A 156 (2018) 44–60.","ieee":"M. A. Kwan, B. Sudakov, and P. Vieira, “Non-trivially intersecting multi-part families,” <i>Journal of Combinatorial Theory Series A</i>, vol. 156. Elsevier, pp. 44–60, 2018.","ista":"Kwan MA, Sudakov B, Vieira P. 2018. Non-trivially intersecting multi-part families. Journal of Combinatorial Theory Series A. 156, 44–60.","chicago":"Kwan, Matthew Alan, Benny Sudakov, and Pedro Vieira. “Non-Trivially Intersecting Multi-Part Families.” <i>Journal of Combinatorial Theory Series A</i>. Elsevier, 2018. <a href=\"https://doi.org/10.1016/j.jcta.2017.12.001\">https://doi.org/10.1016/j.jcta.2017.12.001</a>.","mla":"Kwan, Matthew Alan, et al. “Non-Trivially Intersecting Multi-Part Families.” <i>Journal of Combinatorial Theory Series A</i>, vol. 156, Elsevier, 2018, pp. 44–60, doi:<a href=\"https://doi.org/10.1016/j.jcta.2017.12.001\">10.1016/j.jcta.2017.12.001</a>.","ama":"Kwan MA, Sudakov B, Vieira P. Non-trivially intersecting multi-part families. <i>Journal of Combinatorial Theory Series A</i>. 2018;156:44-60. doi:<a href=\"https://doi.org/10.1016/j.jcta.2017.12.001\">10.1016/j.jcta.2017.12.001</a>"},"publisher":"Elsevier","quality_controlled":"1","oa_version":"Preprint","publication_status":"published","abstract":[{"text":"We say a family of sets is intersecting if any two of its sets intersect, and we say it is trivially intersecting if there is an element which appears in every set of the family. In this paper we study the maximum size of a non-trivially intersecting family in a natural “multi-part” setting. Here the ground set is divided into parts, and one considers families of sets whose intersection with each part is of a prescribed size. Our work is motivated by classical results in the single-part setting due to Erdős, Ko and Rado, and Hilton and Milner, and by a theorem of Frankl concerning intersecting families in this multi-part setting. In the case where the part sizes are sufficiently large we determine the maximum size of a non-trivially intersecting multi-part family, disproving a conjecture of Alon and Katona.","lang":"eng"}],"page":"44-60","day":"01","doi":"10.1016/j.jcta.2017.12.001","extern":"1"},{"_id":"9659","date_published":"2018-06-21T00:00:00Z","external_id":{"arxiv":["1803.09140"],"pmid":["29935495"]},"year":"2018","title":"Communication: Computing the Tolman length for solid-liquid interfaces","arxiv":1,"type":"journal_article","date_created":"2021-07-15T07:51:42Z","article_processing_charge":"No","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","article_type":"original","month":"06","main_file_link":[{"url":"https://doi.org/10.1063/1.5038396","open_access":"1"}],"issue":"23","volume":148,"language":[{"iso":"eng"}],"intvolume":"       148","scopus_import":"1","publication":"The Journal of Chemical Physics","publication_identifier":{"issn":["0021-9606"],"eissn":["1089-7690"]},"status":"public","oa":1,"author":[{"full_name":"Cheng, Bingqing","first_name":"Bingqing","orcid":"0000-0002-3584-9632","last_name":"Cheng","id":"cbe3cda4-d82c-11eb-8dc7-8ff94289fcc9"},{"last_name":"Ceriotti","first_name":"Michele","full_name":"Ceriotti, Michele"}],"date_updated":"2023-02-23T14:03:57Z","publisher":"AIP Publishing","citation":{"ama":"Cheng B, Ceriotti M. Communication: Computing the Tolman length for solid-liquid interfaces. <i>The Journal of Chemical Physics</i>. 2018;148(23). doi:<a href=\"https://doi.org/10.1063/1.5038396\">10.1063/1.5038396</a>","mla":"Cheng, Bingqing, and Michele Ceriotti. “Communication: Computing the Tolman Length for Solid-Liquid Interfaces.” <i>The Journal of Chemical Physics</i>, vol. 148, no. 23, 231102, AIP Publishing, 2018, doi:<a href=\"https://doi.org/10.1063/1.5038396\">10.1063/1.5038396</a>.","ieee":"B. Cheng and M. Ceriotti, “Communication: Computing the Tolman length for solid-liquid interfaces,” <i>The Journal of Chemical Physics</i>, vol. 148, no. 23. AIP Publishing, 2018.","chicago":"Cheng, Bingqing, and Michele Ceriotti. “Communication: Computing the Tolman Length for Solid-Liquid Interfaces.” <i>The Journal of Chemical Physics</i>. AIP Publishing, 2018. <a href=\"https://doi.org/10.1063/1.5038396\">https://doi.org/10.1063/1.5038396</a>.","ista":"Cheng B, Ceriotti M. 2018. Communication: Computing the Tolman length for solid-liquid interfaces. The Journal of Chemical Physics. 148(23), 231102.","apa":"Cheng, B., &#38; Ceriotti, M. (2018). Communication: Computing the Tolman length for solid-liquid interfaces. <i>The Journal of Chemical Physics</i>. AIP Publishing. <a href=\"https://doi.org/10.1063/1.5038396\">https://doi.org/10.1063/1.5038396</a>","short":"B. Cheng, M. Ceriotti, The Journal of Chemical Physics 148 (2018)."},"quality_controlled":"1","pmid":1,"oa_version":"Submitted Version","publication_status":"published","abstract":[{"text":"The curvature dependence of interfacial free energy, which is crucial in quantitatively predicting nucleation kinetics and the stability of bubbles and droplets, is quantified by the Tolman length δ. For solid-liquid interfaces, however, δ has never been computed directly due to various theoretical and practical challenges. Here we perform a direct evaluation of the Tolman length from atomistic simulations of a solid-liquid planar interface in out-of-equilibrium conditions, by first computing the surface tension from the amplitude of thermal capillary fluctuations of a localized version of the Gibbs dividing surface and by then calculating how much the surface energy changes when it is defined relative to the equimolar dividing surface. We computed δ for a model potential, and found a good agreement with the values indirectly inferred from nucleation simulations. The agreement not only validates our approach but also suggests that the nucleation free energy of the system can be perfectly described using classical nucleation theory if the Tolman length is taken into account.","lang":"eng"}],"day":"21","doi":"10.1063/1.5038396","article_number":"231102","extern":"1"},{"doi":"10.1103/physrevlett.120.225901","article_number":"225901","day":"01","extern":"1","oa_version":"Preprint","abstract":[{"text":"We investigate the thermodynamics and kinetics of a hydrogen interstitial in magnetic α-iron, taking account of the quantum fluctuations of the proton as well as the anharmonicities of lattice vibrations and hydrogen hopping. We show that the diffusivity of hydrogen in the lattice of bcc iron deviates strongly from an Arrhenius behavior at and below room temperature. We compare a quantum transition state theory to explicit ring polymer molecular dynamics in the calculation of diffusivity. We then address the trapping of hydrogen by a vacancy as a prototype lattice defect. By a sequence of steps in a thought experiment, each involving a thermodynamic integration, we are able to separate out the binding free energy of a proton to a defect into harmonic and anharmonic, and classical and quantum contributions. We find that about 30% of a typical binding free energy of hydrogen to a lattice defect in iron is accounted for by finite temperature effects, and about half of these arise from quantum proton fluctuations. This has huge implications for the comparison between thermal desorption and permeation experiments and standard electronic structure theory. The implications are even greater for the interpretation of muon spin resonance experiments.","lang":"eng"}],"publication_status":"published","publisher":"American Physical Society","citation":{"ama":"Cheng B, Paxton AT, Ceriotti M. Hydrogen diffusion and trapping in α-iron: The role of quantum and anharmonic fluctuations. <i>Physical Review Letters</i>. 2018;120(22). doi:<a href=\"https://doi.org/10.1103/physrevlett.120.225901\">10.1103/physrevlett.120.225901</a>","mla":"Cheng, Bingqing, et al. “Hydrogen Diffusion and Trapping in α-Iron: The Role of Quantum and Anharmonic Fluctuations.” <i>Physical Review Letters</i>, vol. 120, no. 22, 225901, American Physical Society, 2018, doi:<a href=\"https://doi.org/10.1103/physrevlett.120.225901\">10.1103/physrevlett.120.225901</a>.","ieee":"B. Cheng, A. T. Paxton, and M. Ceriotti, “Hydrogen diffusion and trapping in α-iron: The role of quantum and anharmonic fluctuations,” <i>Physical Review Letters</i>, vol. 120, no. 22. American Physical Society, 2018.","ista":"Cheng B, Paxton AT, Ceriotti M. 2018. Hydrogen diffusion and trapping in α-iron: The role of quantum and anharmonic fluctuations. Physical Review Letters. 120(22), 225901.","chicago":"Cheng, Bingqing, Anthony T. Paxton, and Michele Ceriotti. “Hydrogen Diffusion and Trapping in α-Iron: The Role of Quantum and Anharmonic Fluctuations.” <i>Physical Review Letters</i>. American Physical Society, 2018. <a href=\"https://doi.org/10.1103/physrevlett.120.225901\">https://doi.org/10.1103/physrevlett.120.225901</a>.","apa":"Cheng, B., Paxton, A. T., &#38; Ceriotti, M. (2018). Hydrogen diffusion and trapping in α-iron: The role of quantum and anharmonic fluctuations. <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/physrevlett.120.225901\">https://doi.org/10.1103/physrevlett.120.225901</a>","short":"B. Cheng, A.T. Paxton, M. Ceriotti, Physical Review Letters 120 (2018)."},"date_updated":"2021-08-09T12:36:22Z","author":[{"orcid":"0000-0002-3584-9632","id":"cbe3cda4-d82c-11eb-8dc7-8ff94289fcc9","last_name":"Cheng","full_name":"Cheng, Bingqing","first_name":"Bingqing"},{"full_name":"Paxton, Anthony T.","first_name":"Anthony T.","last_name":"Paxton"},{"full_name":"Ceriotti, Michele","first_name":"Michele","last_name":"Ceriotti"}],"pmid":1,"quality_controlled":"1","scopus_import":"1","publication":"Physical Review Letters","oa":1,"publication_identifier":{"issn":["0031-9007"],"eissn":["1079-7114"]},"status":"public","issue":"22","main_file_link":[{"url":"https://arxiv.org/abs/1803.00600","open_access":"1"}],"language":[{"iso":"eng"}],"intvolume":"       120","volume":120,"date_created":"2021-07-15T12:22:41Z","type":"journal_article","article_type":"review","month":"06","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","article_processing_charge":"No","external_id":{"pmid":["29906144"],"arxiv":["1803.00600"]},"title":"Hydrogen diffusion and trapping in α-iron: The role of quantum and anharmonic fluctuations","arxiv":1,"year":"2018","date_published":"2018-06-01T00:00:00Z","_id":"9665"},{"title":"Theoretical prediction of the homogeneous ice nucleation rate: Disentangling thermodynamics and kinetics","arxiv":1,"year":"2018","external_id":{"pmid":["30412211"],"arxiv":["1807.05551"]},"date_published":"2018-12-07T00:00:00Z","_id":"9668","intvolume":"        20","language":[{"iso":"eng"}],"volume":20,"issue":"45","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1807.05551"}],"month":"12","article_type":"original","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","article_processing_charge":"No","date_created":"2021-07-15T12:51:44Z","type":"journal_article","pmid":1,"quality_controlled":"1","citation":{"mla":"Cheng, Bingqing, et al. “Theoretical Prediction of the Homogeneous Ice Nucleation Rate: Disentangling Thermodynamics and Kinetics.” <i>Physical Chemistry Chemical Physics</i>, vol. 20, no. 45, Royal Society of Chemistry, 2018, pp. 28732–40, doi:<a href=\"https://doi.org/10.1039/c8cp04561e\">10.1039/c8cp04561e</a>.","ama":"Cheng B, Dellago C, Ceriotti M. Theoretical prediction of the homogeneous ice nucleation rate: Disentangling thermodynamics and kinetics. <i>Physical Chemistry Chemical Physics</i>. 2018;20(45):28732-28740. doi:<a href=\"https://doi.org/10.1039/c8cp04561e\">10.1039/c8cp04561e</a>","apa":"Cheng, B., Dellago, C., &#38; Ceriotti, M. (2018). Theoretical prediction of the homogeneous ice nucleation rate: Disentangling thermodynamics and kinetics. <i>Physical Chemistry Chemical Physics</i>. Royal Society of Chemistry. <a href=\"https://doi.org/10.1039/c8cp04561e\">https://doi.org/10.1039/c8cp04561e</a>","short":"B. Cheng, C. Dellago, M. Ceriotti, Physical Chemistry Chemical Physics 20 (2018) 28732–28740.","ieee":"B. Cheng, C. Dellago, and M. Ceriotti, “Theoretical prediction of the homogeneous ice nucleation rate: Disentangling thermodynamics and kinetics,” <i>Physical Chemistry Chemical Physics</i>, vol. 20, no. 45. Royal Society of Chemistry, pp. 28732–28740, 2018.","chicago":"Cheng, Bingqing, Christoph Dellago, and Michele Ceriotti. “Theoretical Prediction of the Homogeneous Ice Nucleation Rate: Disentangling Thermodynamics and Kinetics.” <i>Physical Chemistry Chemical Physics</i>. Royal Society of Chemistry, 2018. <a href=\"https://doi.org/10.1039/c8cp04561e\">https://doi.org/10.1039/c8cp04561e</a>.","ista":"Cheng B, Dellago C, Ceriotti M. 2018. Theoretical prediction of the homogeneous ice nucleation rate: Disentangling thermodynamics and kinetics. Physical Chemistry Chemical Physics. 20(45), 28732–28740."},"publisher":"Royal Society of Chemistry","author":[{"orcid":"0000-0002-3584-9632","id":"cbe3cda4-d82c-11eb-8dc7-8ff94289fcc9","last_name":"Cheng","full_name":"Cheng, Bingqing","first_name":"Bingqing"},{"last_name":"Dellago","full_name":"Dellago, Christoph","first_name":"Christoph"},{"last_name":"Ceriotti","full_name":"Ceriotti, Michele","first_name":"Michele"}],"date_updated":"2021-08-09T12:36:47Z","oa":1,"publication_identifier":{"eissn":["1463-9084"],"issn":["1463-9076"]},"status":"public","scopus_import":"1","publication":"Physical Chemistry Chemical Physics","extern":"1","doi":"10.1039/c8cp04561e","day":"07","page":"28732-28740","abstract":[{"text":"Estimating the homogeneous ice nucleation rate from undercooled liquid water is crucial for understanding many important physical phenomena and technological applications, and challenging for both experiments and theory. From a theoretical point of view, difficulties arise due to the long time scales required, as well as the numerous nucleation pathways involved to form ice nuclei with different stacking disorders. We computed the homogeneous ice nucleation rate at a physically relevant undercooling for a single-site water model, taking into account the diffuse nature of ice–water interfaces, stacking disorders in ice nuclei, and the addition rate of particles to the critical nucleus. We disentangled and investigated the relative importance of all the terms, including interfacial free energy, entropic contributions and the kinetic prefactor, that contribute to the overall nucleation rate. Breaking down the problem into pieces not only provides physical insights into ice nucleation, but also sheds light on the long-standing discrepancy between different theoretical predictions, as well as between theoretical and experimental determinations of the nucleation rate. Moreover, we pinpoint the main shortcomings and suggest strategies to systematically improve the existing simulation methods.","lang":"eng"}],"publication_status":"published","oa_version":"Preprint"},{"status":"public","publication_identifier":{"issn":["2469-9950"],"eissn":["2469-9969"]},"oa":1,"scopus_import":"1","publication":"Physical Review B","quality_controlled":"1","date_updated":"2021-08-09T12:38:26Z","author":[{"full_name":"Cheng, Bingqing","first_name":"Bingqing","id":"cbe3cda4-d82c-11eb-8dc7-8ff94289fcc9","last_name":"Cheng","orcid":"0000-0002-3584-9632"},{"last_name":"Ceriotti","first_name":"Michele","full_name":"Ceriotti, Michele"}],"publisher":"American Physical Society","citation":{"short":"B. Cheng, M. Ceriotti, Physical Review B 97 (2018).","apa":"Cheng, B., &#38; Ceriotti, M. (2018). Computing the absolute Gibbs free energy in atomistic simulations: Applications to defects in solids. <i>Physical Review B</i>. American Physical Society. <a href=\"https://doi.org/10.1103/physrevb.97.054102\">https://doi.org/10.1103/physrevb.97.054102</a>","ieee":"B. Cheng and M. Ceriotti, “Computing the absolute Gibbs free energy in atomistic simulations: Applications to defects in solids,” <i>Physical Review B</i>, vol. 97, no. 5. American Physical Society, 2018.","chicago":"Cheng, Bingqing, and Michele Ceriotti. “Computing the Absolute Gibbs Free Energy in Atomistic Simulations: Applications to Defects in Solids.” <i>Physical Review B</i>. American Physical Society, 2018. <a href=\"https://doi.org/10.1103/physrevb.97.054102\">https://doi.org/10.1103/physrevb.97.054102</a>.","ista":"Cheng B, Ceriotti M. 2018. Computing the absolute Gibbs free energy in atomistic simulations: Applications to defects in solids. Physical Review B. 97(5), 054102.","mla":"Cheng, Bingqing, and Michele Ceriotti. “Computing the Absolute Gibbs Free Energy in Atomistic Simulations: Applications to Defects in Solids.” <i>Physical Review B</i>, vol. 97, no. 5, 054102, American Physical Society, 2018, doi:<a href=\"https://doi.org/10.1103/physrevb.97.054102\">10.1103/physrevb.97.054102</a>.","ama":"Cheng B, Ceriotti M. Computing the absolute Gibbs free energy in atomistic simulations: Applications to defects in solids. <i>Physical Review B</i>. 2018;97(5). doi:<a href=\"https://doi.org/10.1103/physrevb.97.054102\">10.1103/physrevb.97.054102</a>"},"publication_status":"published","abstract":[{"text":"The Gibbs free energy is the fundamental thermodynamic potential underlying the relative stability of different states of matter under constant-pressure conditions. However, computing this quantity from atomic-scale simulations is far from trivial, so the potential energy of a system is often used as a proxy. In this paper, we use a combination of thermodynamic integration methods to accurately evaluate the Gibbs free energies associated with defects in crystals, including the vacancy formation energy in bcc iron, and the stacking fault energy in fcc nickel, iron, and cobalt. We quantify the importance of entropic and anharmonic effects in determining the free energies of defects at high temperatures, and show that the potential energy approximation as well as the harmonic approximation may produce inaccurate or even qualitatively wrong results. Our calculations manifest the necessity to employ accurate free energy methods such as thermodynamic integration to estimate the stability of crystallographic defects at high temperatures.","lang":"eng"}],"oa_version":"Preprint","extern":"1","day":"01","article_number":"054102","doi":"10.1103/physrevb.97.054102","_id":"9687","date_published":"2018-02-01T00:00:00Z","year":"2018","arxiv":1,"title":"Computing the absolute Gibbs free energy in atomistic simulations: Applications to defects in solids","external_id":{"arxiv":["1710.02815"]},"user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","article_processing_charge":"No","month":"02","article_type":"original","type":"journal_article","date_created":"2021-07-19T09:39:48Z","volume":97,"language":[{"iso":"eng"}],"intvolume":"        97","main_file_link":[{"url":"https://arxiv.org/abs/1710.02815","open_access":"1"}],"issue":"5"},{"oa_version":"Published Version","date_created":"2021-08-06T12:26:53Z","type":"research_data_reference","abstract":[{"text":"Table S1. Genes with highest betweenness. Table S2. Local and Master regulators up-regulated. Table S3. Local and Master regulators down-regulated (XLSX 23 kb).","lang":"eng"}],"month":"11","article_processing_charge":"No","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","doi":"10.6084/m9.figshare.7295339.v1","main_file_link":[{"open_access":"1","url":"https://doi.org/10.6084/m9.figshare.7295339.v1"}],"day":"03","department":[{"_id":"SiHi"}],"date_published":"2018-11-03T00:00:00Z","_id":"9807","oa":1,"status":"public","related_material":{"record":[{"relation":"used_in_publication","id":"20","status":"public"}]},"publisher":"Springer Nature","citation":{"ama":"Higareda Almaraz J, Karbiener M, Giroud M, et al. Additional file 1: Of Norepinephrine triggers an immediate-early regulatory network response in primary human white adipocytes. 2018. doi:<a href=\"https://doi.org/10.6084/m9.figshare.7295339.v1\">10.6084/m9.figshare.7295339.v1</a>","mla":"Higareda Almaraz, Juan, et al. <i>Additional File 1: Of Norepinephrine Triggers an Immediate-Early Regulatory Network Response in Primary Human White Adipocytes</i>. Springer Nature, 2018, doi:<a href=\"https://doi.org/10.6084/m9.figshare.7295339.v1\">10.6084/m9.figshare.7295339.v1</a>.","ista":"Higareda Almaraz J, Karbiener M, Giroud M, Pauler F, Gerhalter T, Herzig S, Scheideler M. 2018. Additional file 1: Of Norepinephrine triggers an immediate-early regulatory network response in primary human white adipocytes, Springer Nature, <a href=\"https://doi.org/10.6084/m9.figshare.7295339.v1\">10.6084/m9.figshare.7295339.v1</a>.","ieee":"J. Higareda Almaraz <i>et al.</i>, “Additional file 1: Of Norepinephrine triggers an immediate-early regulatory network response in primary human white adipocytes.” Springer Nature, 2018.","chicago":"Higareda Almaraz, Juan, Michael Karbiener, Maude Giroud, Florian Pauler, Teresa Gerhalter, Stephan Herzig, and Marcel Scheideler. “Additional File 1: Of Norepinephrine Triggers an Immediate-Early Regulatory Network Response in Primary Human White Adipocytes.” Springer Nature, 2018. <a href=\"https://doi.org/10.6084/m9.figshare.7295339.v1\">https://doi.org/10.6084/m9.figshare.7295339.v1</a>.","apa":"Higareda Almaraz, J., Karbiener, M., Giroud, M., Pauler, F., Gerhalter, T., Herzig, S., &#38; Scheideler, M. (2018). Additional file 1: Of Norepinephrine triggers an immediate-early regulatory network response in primary human white adipocytes. Springer Nature. <a href=\"https://doi.org/10.6084/m9.figshare.7295339.v1\">https://doi.org/10.6084/m9.figshare.7295339.v1</a>","short":"J. Higareda Almaraz, M. Karbiener, M. Giroud, F. Pauler, T. Gerhalter, S. Herzig, M. Scheideler, (2018)."},"author":[{"full_name":"Higareda Almaraz, Juan","first_name":"Juan","last_name":"Higareda Almaraz"},{"last_name":"Karbiener","full_name":"Karbiener, Michael","first_name":"Michael"},{"full_name":"Giroud, Maude","first_name":"Maude","last_name":"Giroud"},{"first_name":"Florian","full_name":"Pauler, Florian","id":"48EA0138-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-7462-0048","last_name":"Pauler"},{"first_name":"Teresa","full_name":"Gerhalter, Teresa","last_name":"Gerhalter"},{"last_name":"Herzig","first_name":"Stephan","full_name":"Herzig, Stephan"},{"last_name":"Scheideler","first_name":"Marcel","full_name":"Scheideler, Marcel"}],"date_updated":"2023-09-13T09:10:47Z","title":"Additional file 1: Of Norepinephrine triggers an immediate-early regulatory network response in primary human white adipocytes","year":"2018"},{"day":"03","main_file_link":[{"open_access":"1","url":"https://doi.org/10.6084/m9.figshare.7295369.v1"}],"doi":"10.6084/m9.figshare.7295369.v1","department":[{"_id":"SiHi"}],"type":"research_data_reference","date_created":"2021-08-06T12:31:57Z","oa_version":"Published Version","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","article_processing_charge":"No","month":"11","abstract":[{"text":"Table S4. Counts per Gene per Million Reads Mapped. (XLSX 2751 kb).","lang":"eng"}],"author":[{"last_name":"Higareda Almaraz","first_name":"Juan","full_name":"Higareda Almaraz, Juan"},{"last_name":"Karbiener","full_name":"Karbiener, Michael","first_name":"Michael"},{"last_name":"Giroud","full_name":"Giroud, Maude","first_name":"Maude"},{"first_name":"Florian","full_name":"Pauler, Florian","last_name":"Pauler","id":"48EA0138-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-7462-0048"},{"first_name":"Teresa","full_name":"Gerhalter, Teresa","last_name":"Gerhalter"},{"last_name":"Herzig","full_name":"Herzig, Stephan","first_name":"Stephan"},{"last_name":"Scheideler","first_name":"Marcel","full_name":"Scheideler, Marcel"}],"date_updated":"2023-09-13T09:10:47Z","related_material":{"record":[{"id":"20","status":"public","relation":"used_in_publication"}]},"citation":{"mla":"Higareda Almaraz, Juan, et al. <i>Additional File 3: Of Norepinephrine Triggers an Immediate-Early Regulatory Network Response in Primary Human White Adipocytes</i>. Springer Nature, 2018, doi:<a href=\"https://doi.org/10.6084/m9.figshare.7295369.v1\">10.6084/m9.figshare.7295369.v1</a>.","ama":"Higareda Almaraz J, Karbiener M, Giroud M, et al. Additional file 3: Of Norepinephrine triggers an immediate-early regulatory network response in primary human white adipocytes. 2018. doi:<a href=\"https://doi.org/10.6084/m9.figshare.7295369.v1\">10.6084/m9.figshare.7295369.v1</a>","apa":"Higareda Almaraz, J., Karbiener, M., Giroud, M., Pauler, F., Gerhalter, T., Herzig, S., &#38; Scheideler, M. (2018). Additional file 3: Of Norepinephrine triggers an immediate-early regulatory network response in primary human white adipocytes. Springer Nature. <a href=\"https://doi.org/10.6084/m9.figshare.7295369.v1\">https://doi.org/10.6084/m9.figshare.7295369.v1</a>","short":"J. Higareda Almaraz, M. Karbiener, M. Giroud, F. Pauler, T. Gerhalter, S. Herzig, M. Scheideler, (2018).","ista":"Higareda Almaraz J, Karbiener M, Giroud M, Pauler F, Gerhalter T, Herzig S, Scheideler M. 2018. Additional file 3: Of Norepinephrine triggers an immediate-early regulatory network response in primary human white adipocytes, Springer Nature, <a href=\"https://doi.org/10.6084/m9.figshare.7295369.v1\">10.6084/m9.figshare.7295369.v1</a>.","chicago":"Higareda Almaraz, Juan, Michael Karbiener, Maude Giroud, Florian Pauler, Teresa Gerhalter, Stephan Herzig, and Marcel Scheideler. “Additional File 3: Of Norepinephrine Triggers an Immediate-Early Regulatory Network Response in Primary Human White Adipocytes.” Springer Nature, 2018. <a href=\"https://doi.org/10.6084/m9.figshare.7295369.v1\">https://doi.org/10.6084/m9.figshare.7295369.v1</a>.","ieee":"J. Higareda Almaraz <i>et al.</i>, “Additional file 3: Of Norepinephrine triggers an immediate-early regulatory network response in primary human white adipocytes.” Springer Nature, 2018."},"publisher":"Springer Nature","year":"2018","title":"Additional file 3: Of Norepinephrine triggers an immediate-early regulatory network response in primary human white adipocytes","_id":"9808","date_published":"2018-11-03T00:00:00Z","status":"public","oa":1},{"year":"2018","title":"Numerical data used in figures","date_updated":"2023-09-13T08:45:41Z","author":[{"last_name":"Chaudhry","first_name":"Waqas","full_name":"Chaudhry, Waqas"},{"first_name":"Maros","full_name":"Pleska, Maros","id":"4569785E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-7460-7479","last_name":"Pleska"},{"first_name":"Nilang","full_name":"Shah, Nilang","last_name":"Shah"},{"first_name":"Howard","full_name":"Weiss, Howard","last_name":"Weiss"},{"last_name":"Mccall","first_name":"Ingrid","full_name":"Mccall, Ingrid"},{"last_name":"Meyer","full_name":"Meyer, Justin","first_name":"Justin"},{"last_name":"Gupta","full_name":"Gupta, Animesh","first_name":"Animesh"},{"first_name":"Calin C","full_name":"Guet, Calin C","id":"47F8433E-F248-11E8-B48F-1D18A9856A87","last_name":"Guet","orcid":"0000-0001-6220-2052"},{"first_name":"Bruce","full_name":"Levin, Bruce","last_name":"Levin"}],"citation":{"ama":"Chaudhry W, Pleska M, Shah N, et al. Numerical data used in figures. 2018. doi:<a href=\"https://doi.org/10.1371/journal.pbio.2005971.s008\">10.1371/journal.pbio.2005971.s008</a>","mla":"Chaudhry, Waqas, et al. <i>Numerical Data Used in Figures</i>. Public Library of Science, 2018, doi:<a href=\"https://doi.org/10.1371/journal.pbio.2005971.s008\">10.1371/journal.pbio.2005971.s008</a>.","chicago":"Chaudhry, Waqas, Maros Pleska, Nilang Shah, Howard Weiss, Ingrid Mccall, Justin Meyer, Animesh Gupta, Calin C Guet, and Bruce Levin. “Numerical Data Used in Figures.” Public Library of Science, 2018. <a href=\"https://doi.org/10.1371/journal.pbio.2005971.s008\">https://doi.org/10.1371/journal.pbio.2005971.s008</a>.","ieee":"W. Chaudhry <i>et al.</i>, “Numerical data used in figures.” Public Library of Science, 2018.","ista":"Chaudhry W, Pleska M, Shah N, Weiss H, Mccall I, Meyer J, Gupta A, Guet CC, Levin B. 2018. Numerical data used in figures, Public Library of Science, <a href=\"https://doi.org/10.1371/journal.pbio.2005971.s008\">10.1371/journal.pbio.2005971.s008</a>.","short":"W. Chaudhry, M. Pleska, N. Shah, H. Weiss, I. Mccall, J. Meyer, A. Gupta, C.C. Guet, B. Levin, (2018).","apa":"Chaudhry, W., Pleska, M., Shah, N., Weiss, H., Mccall, I., Meyer, J., … Levin, B. (2018). Numerical data used in figures. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pbio.2005971.s008\">https://doi.org/10.1371/journal.pbio.2005971.s008</a>"},"related_material":{"record":[{"status":"public","id":"82","relation":"used_in_publication"}]},"publisher":"Public Library of Science","status":"public","_id":"9810","date_published":"2018-08-16T00:00:00Z","department":[{"_id":"CaGu"}],"day":"16","doi":"10.1371/journal.pbio.2005971.s008","article_processing_charge":"No","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","month":"08","type":"research_data_reference","oa_version":"Published Version","date_created":"2021-08-06T12:43:44Z"},{"status":"public","oa":1,"_id":"9811","date_published":"2018-05-31T00:00:00Z","year":"2018","title":"Additional file 1: Of negative selection in tumor genome evolution acts on essential cellular functions and the immunopeptidome","date_updated":"2025-04-15T08:30:30Z","author":[{"first_name":"Luis","full_name":"Zapata, Luis","last_name":"Zapata"},{"full_name":"Pich, Oriol","first_name":"Oriol","last_name":"Pich"},{"first_name":"Luis","full_name":"Serrano, Luis","last_name":"Serrano"},{"full_name":"Kondrashov, Fyodor","first_name":"Fyodor","id":"44FDEF62-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8243-4694","last_name":"Kondrashov"},{"full_name":"Ossowski, Stephan","first_name":"Stephan","last_name":"Ossowski"},{"last_name":"Schaefer","full_name":"Schaefer, Martin","first_name":"Martin"}],"related_material":{"record":[{"status":"public","id":"279","relation":"used_in_publication"}]},"citation":{"short":"L. Zapata, O. Pich, L. Serrano, F. Kondrashov, S. Ossowski, M. Schaefer, (2018).","apa":"Zapata, L., Pich, O., Serrano, L., Kondrashov, F., Ossowski, S., &#38; Schaefer, M. (2018). Additional file 1: Of negative selection in tumor genome evolution acts on essential cellular functions and the immunopeptidome. Springer Nature. <a href=\"https://doi.org/10.6084/m9.figshare.6401390.v1\">https://doi.org/10.6084/m9.figshare.6401390.v1</a>","ieee":"L. Zapata, O. Pich, L. Serrano, F. Kondrashov, S. Ossowski, and M. Schaefer, “Additional file 1: Of negative selection in tumor genome evolution acts on essential cellular functions and the immunopeptidome.” Springer Nature, 2018.","ista":"Zapata L, Pich O, Serrano L, Kondrashov F, Ossowski S, Schaefer M. 2018. Additional file 1: Of negative selection in tumor genome evolution acts on essential cellular functions and the immunopeptidome, Springer Nature, <a href=\"https://doi.org/10.6084/m9.figshare.6401390.v1\">10.6084/m9.figshare.6401390.v1</a>.","chicago":"Zapata, Luis, Oriol Pich, Luis Serrano, Fyodor Kondrashov, Stephan Ossowski, and Martin Schaefer. “Additional File 1: Of Negative Selection in Tumor Genome Evolution Acts on Essential Cellular Functions and the Immunopeptidome.” Springer Nature, 2018. <a href=\"https://doi.org/10.6084/m9.figshare.6401390.v1\">https://doi.org/10.6084/m9.figshare.6401390.v1</a>.","mla":"Zapata, Luis, et al. <i>Additional File 1: Of Negative Selection in Tumor Genome Evolution Acts on Essential Cellular Functions and the Immunopeptidome</i>. Springer Nature, 2018, doi:<a href=\"https://doi.org/10.6084/m9.figshare.6401390.v1\">10.6084/m9.figshare.6401390.v1</a>.","ama":"Zapata L, Pich O, Serrano L, Kondrashov F, Ossowski S, Schaefer M. 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