[{"main_file_link":[{"url":" https://doi.org/10.1096/fj.201800443","open_access":"1"}],"citation":{"ista":"Liutkeviciute Z, Gil Mansilla E, Eder T, Casillas Perez BE, Giulia Di Giglio M, Muratspahić E, Grebien F, Rattei T, Muttenthaler M, Cremer S, Gruber C. 2018. Oxytocin-like signaling in ants influences metabolic gene expression and locomotor activity. The FASEB Journal. 32(12), 6808–6821.","chicago":"Liutkeviciute, Zita, Esther Gil Mansilla, Thomas Eder, Barbara E Casillas Perez, Maria Giulia Di Giglio, Edin Muratspahić, Florian Grebien, et al. “Oxytocin-like Signaling in Ants Influences Metabolic Gene Expression and Locomotor Activity.” <i>The FASEB Journal</i>. FASEB, 2018. <a href=\"https://doi.org/10.1096/fj.201800443\">https://doi.org/10.1096/fj.201800443</a>.","mla":"Liutkeviciute, Zita, et al. “Oxytocin-like Signaling in Ants Influences Metabolic Gene Expression and Locomotor Activity.” <i>The FASEB Journal</i>, vol. 32, no. 12, FASEB, 2018, pp. 6808–21, doi:<a href=\"https://doi.org/10.1096/fj.201800443\">10.1096/fj.201800443</a>.","ieee":"Z. Liutkeviciute <i>et al.</i>, “Oxytocin-like signaling in ants influences metabolic gene expression and locomotor activity,” <i>The FASEB Journal</i>, vol. 32, no. 12. FASEB, pp. 6808–6821, 2018.","short":"Z. Liutkeviciute, E. Gil Mansilla, T. Eder, B.E. Casillas Perez, M. Giulia Di Giglio, E. Muratspahić, F. Grebien, T. Rattei, M. Muttenthaler, S. Cremer, C. Gruber, The FASEB Journal 32 (2018) 6808–6821.","ama":"Liutkeviciute Z, Gil Mansilla E, Eder T, et al. Oxytocin-like signaling in ants influences metabolic gene expression and locomotor activity. <i>The FASEB Journal</i>. 2018;32(12):6808-6821. doi:<a href=\"https://doi.org/10.1096/fj.201800443\">10.1096/fj.201800443</a>","apa":"Liutkeviciute, Z., Gil Mansilla, E., Eder, T., Casillas Perez, B. E., Giulia Di Giglio, M., Muratspahić, E., … Gruber, C. (2018). Oxytocin-like signaling in ants influences metabolic gene expression and locomotor activity. <i>The FASEB Journal</i>. FASEB. <a href=\"https://doi.org/10.1096/fj.201800443\">https://doi.org/10.1096/fj.201800443</a>"},"title":"Oxytocin-like signaling in ants influences metabolic gene expression and locomotor activity","publication_status":"published","publication_identifier":{"issn":["0892-6638"]},"external_id":{"isi":["000449359700035"],"pmid":["29939785"]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","project":[{"_id":"25E3D34E-B435-11E9-9278-68D0E5697425","name":"Individual function and social role of oxytocin-like neuropeptides in ants"}],"publist_id":"7721","type":"journal_article","page":"6808-6821","article_type":"original","issue":"12","isi":1,"language":[{"iso":"eng"}],"fulldoi":"https://doi.org/10.1096/fj.201800443","oa_version":"Published Version","_id":"194","day":"29","doi":"10.1096/fj.201800443","article_processing_charge":"No","department":[{"_id":"SyCr"}],"date_created":"2018-12-11T11:45:08Z","date_updated":"2026-06-18T18:15:11Z","month":"11","date_published":"2018-11-29T00:00:00Z","author":[{"full_name":"Liutkeviciute, Zita","first_name":"Zita","last_name":"Liutkeviciute"},{"full_name":"Gil Mansilla, Esther","first_name":"Esther","last_name":"Gil Mansilla"},{"last_name":"Eder","full_name":"Eder, Thomas","first_name":"Thomas"},{"last_name":"Casillas Perez","first_name":"Barbara E","id":"351ED2AA-F248-11E8-B48F-1D18A9856A87","full_name":"Casillas Perez, Barbara E"},{"full_name":"Giulia Di Giglio, Maria","first_name":"Maria","last_name":"Giulia Di Giglio"},{"full_name":"Muratspahić, Edin","first_name":"Edin","last_name":"Muratspahić"},{"last_name":"Grebien","full_name":"Grebien, Florian","first_name":"Florian"},{"first_name":"Thomas","full_name":"Rattei, Thomas","last_name":"Rattei"},{"full_name":"Muttenthaler, Markus","first_name":"Markus","last_name":"Muttenthaler"},{"first_name":"Sylvia","id":"2F64EC8C-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2193-3868","full_name":"Cremer, Sylvia","last_name":"Cremer"},{"last_name":"Gruber","full_name":"Gruber, Christian","first_name":"Christian"}],"oa":1,"abstract":[{"lang":"eng","text":"Ants are emerging model systems to study cellular signaling because distinct castes possess different physiologic phenotypes within the same colony. Here we studied the functionality of inotocin signaling, an insect ortholog of mammalian oxytocin (OT), which was recently discovered in ants. In Lasius ants, we determined that specialization within the colony, seasonal factors, and physiologic conditions down-regulated the expression of the OT-like signaling system. Given this natural variation, we interrogated its function using RNAi knockdowns. Next-generation RNA sequencing of OT-like precursor knock-down ants highlighted its role in the regulation of genes involved in metabolism. Knock-down ants exhibited higher walking activity and increased self-grooming in the brood chamber. We propose that OT-like signaling in ants is important for regulating metabolic processes and locomotion."}],"publisher":"FASEB","publication":"The FASEB Journal","volume":32,"year":"2018","status":"public","quality_controlled":"1","ddc":["570"],"pmid":1,"scopus_import":"1","intvolume":"        32"},{"article_processing_charge":"No","day":"28","_id":"19494","language":[{"iso":"eng"}],"fulldoi":"https://doi.org/10.1080/00029890.2018.1495491","oa_version":"Preprint","doi":"10.1080/00029890.2018.1495491","article_type":"original","page":"689-703","arxiv":1,"issue":"8","type":"journal_article","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"Rational right triangles of a given area","external_id":{"arxiv":["1706.05919"]},"publication_status":"published","publication_identifier":{"issn":["0002-9890"],"eissn":["1930-0972"]},"extern":"1","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.1706.05919"}],"citation":{"apa":"Chan, S. (2018). Rational right triangles of a given area. <i>The American Mathematical Monthly</i>. Taylor &#38; Francis. <a href=\"https://doi.org/10.1080/00029890.2018.1495491\">https://doi.org/10.1080/00029890.2018.1495491</a>","short":"S. Chan, The American Mathematical Monthly 125 (2018) 689–703.","ama":"Chan S. Rational right triangles of a given area. <i>The American Mathematical Monthly</i>. 2018;125(8):689-703. doi:<a href=\"https://doi.org/10.1080/00029890.2018.1495491\">10.1080/00029890.2018.1495491</a>","mla":"Chan, Stephanie. “Rational Right Triangles of a given Area.” <i>The American Mathematical Monthly</i>, vol. 125, no. 8, Taylor &#38; Francis, 2018, pp. 689–703, doi:<a href=\"https://doi.org/10.1080/00029890.2018.1495491\">10.1080/00029890.2018.1495491</a>.","ieee":"S. Chan, “Rational right triangles of a given area,” <i>The American Mathematical Monthly</i>, vol. 125, no. 8. Taylor &#38; Francis, pp. 689–703, 2018.","chicago":"Chan, Stephanie. “Rational Right Triangles of a given Area.” <i>The American Mathematical Monthly</i>. Taylor &#38; Francis, 2018. <a href=\"https://doi.org/10.1080/00029890.2018.1495491\">https://doi.org/10.1080/00029890.2018.1495491</a>.","ista":"Chan S. 2018. Rational right triangles of a given area. The American Mathematical Monthly. 125(8), 689–703."},"scopus_import":"1","OA_type":"green","status":"public","quality_controlled":"1","intvolume":"       125","year":"2018","volume":125,"publication":"The American Mathematical Monthly","publisher":"Taylor & Francis","oa":1,"author":[{"last_name":"Chan","orcid":"0000-0001-8467-4106","first_name":"Yik Tung","id":"c4c0afc8-9262-11ed-9231-d8b0bc743af1","full_name":"Chan, Yik Tung"}],"abstract":[{"lang":"eng","text":"Starting from any given rational-sided, right triangle, for example, the (3,4,5)-triangle with area 6, we use Euclidean geometry to show that there are infinitely many other rational-sided, right triangles of the same area. We show further that the set of all such triangles of a given area is finitely generated under our geometric construction. Such areas are known as “congruent numbers” and have a rich history in which all the results in this article have been proved and far more. Yet, as far as we can tell, this seems to be the first exploration using this kind of geometric technique."}],"date_published":"2018-09-28T00:00:00Z","month":"09","OA_place":"repository","date_updated":"2025-07-10T11:51:49Z","date_created":"2025-04-05T10:51:16Z"},{"article_number":"103","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"Isatin-Schiff base-copper (II) complex induces cell death in p53-positive tumors","publication_identifier":{"issn":["2058-7716"]},"publication_status":"published","external_id":{"pmid":["30455989 "]},"extern":"1","main_file_link":[{"url":"https://doi.org/10.1038/s41420-018-0120-z","open_access":"1"}],"citation":{"ista":"Bulatov E, Sayarova R, Mingaleeva R, Miftakhova R, Gomzikova M, Ignatev I, Petukhov A, Davidovich P, Rizvanov A, Barlev NA. 2018. Isatin-Schiff base-copper (II) complex induces cell death in p53-positive tumors. Cell Death Discovery. 4, 103.","chicago":"Bulatov, Emil, Regina Sayarova, Rimma Mingaleeva, Regina Miftakhova, Marina Gomzikova, Iurii Ignatev, Alexey Petukhov, Pavel Davidovich, Albert Rizvanov, and Nickolai A. Barlev. “Isatin-Schiff Base-Copper (II) Complex Induces Cell Death in P53-Positive Tumors.” <i>Cell Death Discovery</i>. Springer Nature, 2018. <a href=\"https://doi.org/10.1038/s41420-018-0120-z\">https://doi.org/10.1038/s41420-018-0120-z</a>.","apa":"Bulatov, E., Sayarova, R., Mingaleeva, R., Miftakhova, R., Gomzikova, M., Ignatev, I., … Barlev, N. A. (2018). Isatin-Schiff base-copper (II) complex induces cell death in p53-positive tumors. <i>Cell Death Discovery</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41420-018-0120-z\">https://doi.org/10.1038/s41420-018-0120-z</a>","mla":"Bulatov, Emil, et al. “Isatin-Schiff Base-Copper (II) Complex Induces Cell Death in P53-Positive Tumors.” <i>Cell Death Discovery</i>, vol. 4, 103, Springer Nature, 2018, doi:<a href=\"https://doi.org/10.1038/s41420-018-0120-z\">10.1038/s41420-018-0120-z</a>.","ieee":"E. Bulatov <i>et al.</i>, “Isatin-Schiff base-copper (II) complex induces cell death in p53-positive tumors,” <i>Cell Death Discovery</i>, vol. 4. Springer Nature, 2018.","short":"E. Bulatov, R. Sayarova, R. Mingaleeva, R. Miftakhova, M. Gomzikova, I. Ignatev, A. Petukhov, P. Davidovich, A. Rizvanov, N.A. Barlev, Cell Death Discovery 4 (2018).","ama":"Bulatov E, Sayarova R, Mingaleeva R, et al. Isatin-Schiff base-copper (II) complex induces cell death in p53-positive tumors. <i>Cell Death Discovery</i>. 2018;4. doi:<a href=\"https://doi.org/10.1038/s41420-018-0120-z\">10.1038/s41420-018-0120-z</a>"},"article_processing_charge":"Yes","oa_version":"Published Version","fulldoi":"https://doi.org/10.1038/s41420-018-0120-z","language":[{"iso":"eng"}],"day":"13","_id":"19544","doi":"10.1038/s41420-018-0120-z","article_type":"original","has_accepted_license":"1","type":"journal_article","date_published":"2018-11-13T00:00:00Z","month":"11","OA_place":"publisher","date_updated":"2025-07-10T11:51:52Z","department":[{"_id":"GradSch"},{"_id":"LoSw"}],"date_created":"2025-04-11T01:31:42Z","ddc":["570"],"status":"public","OA_type":"gold","quality_controlled":"1","pmid":1,"DOAJ_listed":"1","intvolume":"         4","publication":"Cell Death Discovery","year":"2018","volume":4,"publisher":"Springer Nature","author":[{"full_name":"Bulatov, Emil","first_name":"Emil","last_name":"Bulatov"},{"first_name":"Regina","full_name":"Sayarova, Regina","last_name":"Sayarova"},{"last_name":"Mingaleeva","full_name":"Mingaleeva, Rimma","first_name":"Rimma"},{"full_name":"Miftakhova, Regina","first_name":"Regina","last_name":"Miftakhova"},{"full_name":"Gomzikova, Marina","first_name":"Marina","last_name":"Gomzikova"},{"full_name":"Ignatev, Iurii","first_name":"Iurii","id":"2ac71786-dc7d-11ea-9b2f-c5ad4b9faff6","last_name":"Ignatev"},{"last_name":"Petukhov","full_name":"Petukhov, Alexey","first_name":"Alexey"},{"last_name":"Davidovich","full_name":"Davidovich, Pavel","first_name":"Pavel"},{"last_name":"Rizvanov","first_name":"Albert","full_name":"Rizvanov, Albert"},{"first_name":"Nickolai A.","full_name":"Barlev, Nickolai A.","last_name":"Barlev"}],"oa":1,"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"abstract":[{"lang":"eng","text":"Medicinal bioinorganic chemistry is a thriving field of drug research for cancer treatment. Transition metal complexes coordinated to essential biological scaffolds represent a highly promising class of compounds for design of novel target-specific therapeutics. We report here the biological evaluation of a novel Isatin-Schiff base derivative and its Cu(II) complex in several tumor cell lines by assessing their effects on cellular metabolism, real-time cell proliferation and induction of apoptosis. Further, the impact of compounds on the p53 protein and expression of its target genes, including MDM2, p21/CDKN1A, and PUMA was evaluated. Results obtained in this study provide further evidence in support of our prior data suggesting the p53-mediated mechanism of action for Isatin-Schiff base derivatives and their complexes and also shed light on potential use of these compounds for stimulation of apoptosis in breast cancer cells via activation of the pro-apoptotic PUMA gene."}]},{"publisher":"MDPI","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"abstract":[{"lang":"eng","text":"The importance of astrocytic l-lactate (LL) for normal functioning of neural circuits such as those regulating learning/memory, sleep/wake state, autonomic homeostasis, or emotional behaviour is being increasingly recognised. l-Lactate can act on neurones as a metabolic or redox substrate, but transmembrane receptor targets are also emerging. A comparative review of the hydroxy-carboxylic acid receptor (HCA1, formerly known as GPR81), Olfactory Receptor Family 51 Subfamily E Member 2 (OR51E2), and orphan receptor GPR4 highlights differences in their LL sensitivity, pharmacology, intracellular coupling, and localisation in the brain. In addition, a putative Gs-coupled receptor on noradrenergic neurones, LLRx, which we previously postulated, remains to be identified. Next-generation sequencing revealed several orphan receptors expressed in locus coeruleus neurones. Screening of a selection of these suggests additional LL-sensitive receptors: GPR180 which inhibits and GPR137 which activates intracellular cyclic AMP signalling in response to LL in a heterologous expression system. To further characterise binding of LL at LLRx, we carried out a structure–activity relationship study which demonstrates that carboxyl and 2-hydroxyl moieties of LL are essential for triggering d-lactate-sensitive noradrenaline release in locus coeruleus, and that the size of the LL binding pocket is limited towards the methyl group position. The evidence accumulating to date suggests that LL acts via multiple receptor targets to modulate distinct brain functions."}],"file_date_updated":"2025-05-19T08:20:19Z","oa":1,"author":[{"last_name":"Mosienko","first_name":"Valentina","full_name":"Mosienko, Valentina"},{"full_name":"Rasooli-Nejad, Seyed","first_name":"Seyed","last_name":"Rasooli-Nejad"},{"last_name":"Kishi","full_name":"Kishi, Kasumi","id":"3065DFC4-F248-11E8-B48F-1D18A9856A87","first_name":"Kasumi"},{"first_name":"Matt","full_name":"De Both, Matt","last_name":"De Both"},{"first_name":"David","full_name":"Jane, David","last_name":"Jane"},{"last_name":"Huentelman","first_name":"Matt J.","full_name":"Huentelman, Matt J."},{"last_name":"Kasparov","first_name":"Sergey","full_name":"Kasparov, Sergey"},{"full_name":"Teschemacher, Anja G.","first_name":"Anja G.","last_name":"Teschemacher"}],"intvolume":"         1","DOAJ_listed":"1","scopus_import":"1","status":"public","ddc":["570"],"quality_controlled":"1","OA_type":"gold","year":"2018","volume":1,"publication":"Neuroglia","date_updated":"2025-05-19T08:28:40Z","file":[{"file_id":"19711","file_size":1909402,"content_type":"application/pdf","relation":"main_file","date_created":"2025-05-19T08:20:19Z","success":1,"file_name":"2018_Neuroglia_Mosienko.pdf","checksum":"cadb56618f72edf4703b6a9855e84baa","creator":"dernst","date_updated":"2025-05-19T08:20:19Z","access_level":"open_access"}],"date_created":"2025-05-18T22:02:51Z","acknowledgement":"This work was supported by grants from BBSRC BB/L019396/1, and MRC MR/L020661/1. David Kleinfeld for his gift of CNiFER cells, Lesley Arberry for expert technical support, Andrew Herman for support with FACS sorting.","department":[{"_id":"AnKi"}],"date_published":"2018-12-01T00:00:00Z","OA_place":"publisher","month":"12","issue":"2","article_type":"original","page":"365-380","type":"journal_article","has_accepted_license":"1","article_processing_charge":"Yes","doi":"10.3390/neuroglia1020025","day":"01","_id":"19706","oa_version":"Published Version","fulldoi":"https://doi.org/10.3390/neuroglia1020025","language":[{"iso":"eng"}],"citation":{"ista":"Mosienko V, Rasooli-Nejad S, Kishi K, De Both M, Jane D, Huentelman MJ, Kasparov S, Teschemacher AG. 2018. Putative receptors underpinning L-Lactate signalling in locus coeruleus. Neuroglia. 1(2), 365–380.","chicago":"Mosienko, Valentina, Seyed Rasooli-Nejad, Kasumi Kishi, Matt De Both, David Jane, Matt J. Huentelman, Sergey Kasparov, and Anja G. Teschemacher. “Putative Receptors Underpinning L-Lactate Signalling in Locus Coeruleus.” <i>Neuroglia</i>. MDPI, 2018. <a href=\"https://doi.org/10.3390/neuroglia1020025\">https://doi.org/10.3390/neuroglia1020025</a>.","apa":"Mosienko, V., Rasooli-Nejad, S., Kishi, K., De Both, M., Jane, D., Huentelman, M. J., … Teschemacher, A. G. (2018). Putative receptors underpinning L-Lactate signalling in locus coeruleus. <i>Neuroglia</i>. MDPI. <a href=\"https://doi.org/10.3390/neuroglia1020025\">https://doi.org/10.3390/neuroglia1020025</a>","ieee":"V. Mosienko <i>et al.</i>, “Putative receptors underpinning L-Lactate signalling in locus coeruleus,” <i>Neuroglia</i>, vol. 1, no. 2. MDPI, pp. 365–380, 2018.","mla":"Mosienko, Valentina, et al. “Putative Receptors Underpinning L-Lactate Signalling in Locus Coeruleus.” <i>Neuroglia</i>, vol. 1, no. 2, MDPI, 2018, pp. 365–80, doi:<a href=\"https://doi.org/10.3390/neuroglia1020025\">10.3390/neuroglia1020025</a>.","ama":"Mosienko V, Rasooli-Nejad S, Kishi K, et al. Putative receptors underpinning L-Lactate signalling in locus coeruleus. <i>Neuroglia</i>. 2018;1(2):365-380. doi:<a href=\"https://doi.org/10.3390/neuroglia1020025\">10.3390/neuroglia1020025</a>","short":"V. Mosienko, S. Rasooli-Nejad, K. Kishi, M. De Both, D. Jane, M.J. Huentelman, S. Kasparov, A.G. Teschemacher, Neuroglia 1 (2018) 365–380."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","publication_identifier":{"eissn":["2571-6980"]},"title":"Putative receptors underpinning L-Lactate signalling in locus coeruleus"},{"author":[{"full_name":"Midya, Bikashkali","first_name":"Bikashkali","id":"456187FC-F248-11E8-B48F-1D18A9856A87","last_name":"Midya"},{"full_name":"Konotop, Vladimir","first_name":"Vladimir","last_name":"Konotop"}],"oa":1,"corr_author":"1","abstract":[{"text":"It is shown that two fundamentally different phenomena, the bound states in continuum and the spectral singularity (or time-reversed spectral singularity), can occur simultaneously. This can be achieved in a rectangular core dielectric waveguide with an embedded active (or absorbing) layer. In such a system a two-dimensional bound state in a continuum is created in the plane of a waveguide cross section, and it is emitted or absorbed along the waveguide core. The idea can be used for experimental implementation of a laser or a coherent-perfect-absorber for a photonic bound state that resides in a continuous spectrum.","lang":"eng"}],"publisher":"Optica Publishing Group","publication":"Optics Letters","year":"2018","volume":43,"quality_controlled":"1","status":"public","scopus_import":"1","intvolume":"        43","department":[{"_id":"MiLe"}],"acknowledgement":"Seventh Framework Programme (FP7) People: Marie-Curie Actions (PEOPLE) (291734). B. M. acknowledges the financial support by the People Programme (Marie Curie Actions) of the European Union’s Seventh Framework Programme (FP7/ 2007-2013) under REA.","date_created":"2018-12-11T11:46:27Z","ec_funded":1,"date_updated":"2025-06-03T11:21:56Z","month":"02","date_published":"2018-02-01T00:00:00Z","publist_id":"7388","project":[{"_id":"25681D80-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","name":"International IST Postdoc Fellowship Programme","grant_number":"291734"}],"type":"journal_article","page":"607 - 610","issue":"3","arxiv":1,"isi":1,"oa_version":"Preprint","fulldoi":"https://doi.org/10.1364/OL.43.000607","language":[{"iso":"eng"}],"_id":"435","day":"01","doi":"10.1364/OL.43.000607","article_processing_charge":"No","main_file_link":[{"url":"https://arxiv.org/abs/1711.01986","open_access":"1"}],"citation":{"ista":"Midya B, Konotop V. 2018. Coherent-perfect-absorber and laser for bound states in a continuum. Optics Letters. 43(3), 607–610.","chicago":"Midya, Bikashkali, and Vladimir Konotop. “Coherent-Perfect-Absorber and Laser for Bound States in a Continuum.” <i>Optics Letters</i>. Optica Publishing Group, 2018. <a href=\"https://doi.org/10.1364/OL.43.000607\">https://doi.org/10.1364/OL.43.000607</a>.","apa":"Midya, B., &#38; Konotop, V. (2018). Coherent-perfect-absorber and laser for bound states in a continuum. <i>Optics Letters</i>. Optica Publishing Group. <a href=\"https://doi.org/10.1364/OL.43.000607\">https://doi.org/10.1364/OL.43.000607</a>","mla":"Midya, Bikashkali, and Vladimir Konotop. “Coherent-Perfect-Absorber and Laser for Bound States in a Continuum.” <i>Optics Letters</i>, vol. 43, no. 3, Optica Publishing Group, 2018, pp. 607–10, doi:<a href=\"https://doi.org/10.1364/OL.43.000607\">10.1364/OL.43.000607</a>.","ieee":"B. Midya and V. Konotop, “Coherent-perfect-absorber and laser for bound states in a continuum,” <i>Optics Letters</i>, vol. 43, no. 3. Optica Publishing Group, pp. 607–610, 2018.","short":"B. Midya, V. Konotop, Optics Letters 43 (2018) 607–610.","ama":"Midya B, Konotop V. Coherent-perfect-absorber and laser for bound states in a continuum. <i>Optics Letters</i>. 2018;43(3):607-610. doi:<a href=\"https://doi.org/10.1364/OL.43.000607\">10.1364/OL.43.000607</a>"},"title":"Coherent-perfect-absorber and laser for bound states in a continuum","publication_status":"published","external_id":{"isi":["000423776600066"],"arxiv":["1711.01986"]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"issue":"6","related_material":{"link":[{"relation":"press_release","url":"https://ist.ac.at/en/news/interference-as-a-new-method-for-cooling-quantum-devices/","description":"News on IST Homepage"}]},"isi":1,"arxiv":1,"project":[{"_id":"257EB838-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","grant_number":"732894","name":"Hybrid Optomechanical Technologies"},{"name":"Microwave-to-Optical Quantum Link: Quantum Teleportation and Quantum Illumination with cavity Optomechanics","grant_number":"707438","_id":"258047B6-B435-11E9-9278-68D0E5697425","call_identifier":"H2020"}],"publist_id":"7387","type":"journal_article","article_processing_charge":"No","language":[{"iso":"eng"}],"fulldoi":"https://doi.org/10.1103/PhysRevLett.120.060601","oa_version":"Preprint","_id":"436","day":"07","doi":"10.1103/PhysRevLett.120.060601","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1706.09051"}],"citation":{"ista":"Barzanjeh S, Aquilina M, Xuereb A. 2018. Manipulating the flow of thermal noise in quantum devices. Physical Review Letters. 120(6), 060601.","chicago":"Barzanjeh, Shabir, Matteo Aquilina, and André Xuereb. “Manipulating the Flow of Thermal Noise in Quantum Devices.” <i>Physical Review Letters</i>. American Physical Society, 2018. <a href=\"https://doi.org/10.1103/PhysRevLett.120.060601\">https://doi.org/10.1103/PhysRevLett.120.060601</a>.","ieee":"S. Barzanjeh, M. Aquilina, and A. Xuereb, “Manipulating the flow of thermal noise in quantum devices,” <i>Physical Review Letters</i>, vol. 120, no. 6. American Physical Society, 2018.","mla":"Barzanjeh, Shabir, et al. “Manipulating the Flow of Thermal Noise in Quantum Devices.” <i>Physical Review Letters</i>, vol. 120, no. 6, 060601, American Physical Society, 2018, doi:<a href=\"https://doi.org/10.1103/PhysRevLett.120.060601\">10.1103/PhysRevLett.120.060601</a>.","ama":"Barzanjeh S, Aquilina M, Xuereb A. Manipulating the flow of thermal noise in quantum devices. <i>Physical Review Letters</i>. 2018;120(6). doi:<a href=\"https://doi.org/10.1103/PhysRevLett.120.060601\">10.1103/PhysRevLett.120.060601</a>","short":"S. Barzanjeh, M. Aquilina, A. Xuereb, Physical Review Letters 120 (2018).","apa":"Barzanjeh, S., Aquilina, M., &#38; Xuereb, A. (2018). Manipulating the flow of thermal noise in quantum devices. <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevLett.120.060601\">https://doi.org/10.1103/PhysRevLett.120.060601</a>"},"article_number":"060601 ","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","title":"Manipulating the flow of thermal noise in quantum devices","publication_status":"published","external_id":{"isi":["000424382100004"],"arxiv":["1706.09051"]},"publisher":"American Physical Society","author":[{"id":"2D25E1F6-F248-11E8-B48F-1D18A9856A87","first_name":"Shabir","orcid":"0000-0003-0415-1423","full_name":"Barzanjeh, Shabir","last_name":"Barzanjeh"},{"first_name":"Matteo","full_name":"Aquilina, Matteo","last_name":"Aquilina"},{"last_name":"Xuereb","first_name":"André","full_name":"Xuereb, André"}],"oa":1,"abstract":[{"lang":"eng","text":"There has been significant interest recently in using complex quantum systems to create effective nonreciprocal dynamics. Proposals have been put forward for the realization of artificial magnetic fields for photons and phonons; experimental progress is fast making these proposals a reality. Much work has concentrated on the use of such systems for controlling the flow of signals, e.g., to create isolators or directional amplifiers for optical signals. In this Letter, we build on this work but move in a different direction. We develop the theory of and discuss a potential realization for the controllable flow of thermal noise in quantum systems. We demonstrate theoretically that the unidirectional flow of thermal noise is possible within quantum cascaded systems. Viewing an optomechanical platform as a cascaded system we show here that one can ultimately control the direction of the flow of thermal noise. By appropriately engineering the mechanical resonator, which acts as an artificial reservoir, the flow of thermal noise can be constrained to a desired direction, yielding a thermal rectifier. The proposed quantum thermal noise rectifier could potentially be used to develop devices such as a thermal modulator, a thermal router, and a thermal amplifier for nanoelectronic devices and superconducting circuits."}],"corr_author":"1","status":"public","quality_controlled":"1","scopus_import":"1","intvolume":"       120","publication":"Physical Review Letters","volume":120,"year":"2018","date_updated":"2024-10-22T09:36:24Z","department":[{"_id":"JoFi"}],"date_created":"2018-12-11T11:46:28Z","ec_funded":1,"date_published":"2018-02-07T00:00:00Z","month":"02"},{"page":"1074 - 1077","issue":"6","isi":1,"project":[{"grant_number":"724373","name":"Cellular Navigation Along Spatial Gradients","call_identifier":"H2020","_id":"25FE9508-B435-11E9-9278-68D0E5697425"}],"publist_id":"7386","has_accepted_license":"1","type":"journal_article","pubrep_id":"1067","article_processing_charge":"Yes (via OA deal)","language":[{"iso":"eng"}],"fulldoi":"https://doi.org/10.1002/eji.201747358","oa_version":"Published Version","_id":"437","day":"13","doi":"10.1002/eji.201747358","citation":{"apa":"Leithner, A. F., Renkawitz, J., de Vries, I., Hauschild, R., Haecker, H., &#38; Sixt, M. K. (2018). Fast and efficient genetic engineering of hematopoietic precursor cells for the study of dendritic cell migration. <i>European Journal of Immunology</i>. Wiley-Blackwell. <a href=\"https://doi.org/10.1002/eji.201747358\">https://doi.org/10.1002/eji.201747358</a>","ieee":"A. F. Leithner, J. Renkawitz, I. de Vries, R. Hauschild, H. Haecker, and M. K. Sixt, “Fast and efficient genetic engineering of hematopoietic precursor cells for the study of dendritic cell migration,” <i>European Journal of Immunology</i>, vol. 48, no. 6. Wiley-Blackwell, pp. 1074–1077, 2018.","mla":"Leithner, Alexander F., et al. “Fast and Efficient Genetic Engineering of Hematopoietic Precursor Cells for the Study of Dendritic Cell Migration.” <i>European Journal of Immunology</i>, vol. 48, no. 6, Wiley-Blackwell, 2018, pp. 1074–77, doi:<a href=\"https://doi.org/10.1002/eji.201747358\">10.1002/eji.201747358</a>.","short":"A.F. Leithner, J. Renkawitz, I. de Vries, R. Hauschild, H. Haecker, M.K. Sixt, European Journal of Immunology 48 (2018) 1074–1077.","ama":"Leithner AF, Renkawitz J, de Vries I, Hauschild R, Haecker H, Sixt MK. Fast and efficient genetic engineering of hematopoietic precursor cells for the study of dendritic cell migration. <i>European Journal of Immunology</i>. 2018;48(6):1074-1077. doi:<a href=\"https://doi.org/10.1002/eji.201747358\">10.1002/eji.201747358</a>","ista":"Leithner AF, Renkawitz J, de Vries I, Hauschild R, Haecker H, Sixt MK. 2018. Fast and efficient genetic engineering of hematopoietic precursor cells for the study of dendritic cell migration. European Journal of Immunology. 48(6), 1074–1077.","chicago":"Leithner, Alexander F, Jörg Renkawitz, Ingrid de Vries, Robert Hauschild, Hans Haecker, and Michael K Sixt. “Fast and Efficient Genetic Engineering of Hematopoietic Precursor Cells for the Study of Dendritic Cell Migration.” <i>European Journal of Immunology</i>. Wiley-Blackwell, 2018. <a href=\"https://doi.org/10.1002/eji.201747358\">https://doi.org/10.1002/eji.201747358</a>."},"acknowledged_ssus":[{"_id":"SSU"}],"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","title":"Fast and efficient genetic engineering of hematopoietic precursor cells for the study of dendritic cell migration","publication_status":"published","external_id":{"isi":["000434963700016"]},"publisher":"Wiley-Blackwell","author":[{"last_name":"Leithner","full_name":"Leithner, Alexander F","orcid":"0000-0002-1073-744X","id":"3B1B77E4-F248-11E8-B48F-1D18A9856A87","first_name":"Alexander F"},{"full_name":"Renkawitz, Jörg","first_name":"Jörg","id":"3F0587C8-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-2856-3369","last_name":"Renkawitz"},{"first_name":"Ingrid","id":"4C7D837E-F248-11E8-B48F-1D18A9856A87","full_name":"De Vries, Ingrid","last_name":"De Vries"},{"last_name":"Hauschild","first_name":"Robert","id":"4E01D6B4-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-9843-3522","full_name":"Hauschild, Robert"},{"full_name":"Haecker, Hans","first_name":"Hans","last_name":"Haecker"},{"last_name":"Sixt","first_name":"Michael K","id":"41E9FBEA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6620-9179","full_name":"Sixt, Michael K"}],"file_date_updated":"2020-07-14T12:46:27Z","oa":1,"abstract":[{"text":"Dendritic cells (DCs) are sentinels of the adaptive immune system that reside in peripheral organs of mammals. Upon pathogen encounter, they undergo maturation and up-regulate the chemokine receptor CCR7 that guides them along gradients of its chemokine ligands CCL19 and 21 to the next draining lymph node. There, DCs present peripherally acquired antigen to naïve T cells, thereby triggering adaptive immunity.","lang":"eng"}],"tmp":{"name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)","short":"CC BY-NC (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","image":"/images/cc_by_nc.png"},"corr_author":"1","status":"public","quality_controlled":"1","ddc":["570"],"scopus_import":"1","intvolume":"        48","publication":"European Journal of Immunology","volume":48,"year":"2018","file":[{"relation":"main_file","content_type":"application/pdf","file_size":590106,"file_id":"5044","creator":"system","access_level":"open_access","date_updated":"2020-07-14T12:46:27Z","checksum":"9d5b74cd016505aeb9a4c2d33bbedaeb","date_created":"2018-12-12T10:13:56Z","file_name":"IST-2018-1067-v1+2_Leithner_et_al-2018-European_Journal_of_Immunology.pdf"}],"date_updated":"2025-04-14T07:42:07Z","department":[{"_id":"MiSi"},{"_id":"Bio"}],"acknowledgement":"This work was supported by grants of the European Research Council (ERC CoG 724373) and the Austrian Science Fund (FWF) to M.S. We thank the scientific support units at IST Austria for excellent technical support.\r\nWe thank the  scientific  support units at IST Austria for excellent technical support.   ","date_created":"2018-12-11T11:46:28Z","ec_funded":1,"date_published":"2018-02-13T00:00:00Z","month":"02","license":"https://creativecommons.org/licenses/by-nc/4.0/"},{"doi":"10.1093/nar/gky079","day":"06","_id":"438","oa_version":"Published Version","fulldoi":"https://doi.org/10.1093/nar/gky079","language":[{"iso":"eng"}],"article_processing_charge":"Yes (in subscription journal)","type":"journal_article","pubrep_id":"971","project":[{"call_identifier":"FWF","_id":"3AC91DDA-15DF-11EA-824D-93A3E7B544D1","name":"FWF Open Access Fund"}],"has_accepted_license":"1","isi":1,"issue":"6","related_material":{"record":[{"relation":"popular_science","id":"5569","status":"public"}]},"page":"2918-2931","external_id":{"isi":["000429009500021"]},"publication_status":"published","title":"Autoregulation of mazEF expression underlies growth heterogeneity in bacterial populations","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","citation":{"ieee":"N. Nikolic, T. Bergmiller, A. Vandervelde, T. Albanese, L. Gelens, and I. Moll, “Autoregulation of mazEF expression underlies growth heterogeneity in bacterial populations,” <i>Nucleic Acids Research</i>, vol. 46, no. 6. Oxford University Press, pp. 2918–2931, 2018.","mla":"Nikolic, Nela, et al. “Autoregulation of MazEF Expression Underlies Growth Heterogeneity in Bacterial Populations.” <i>Nucleic Acids Research</i>, vol. 46, no. 6, Oxford University Press, 2018, pp. 2918–31, doi:<a href=\"https://doi.org/10.1093/nar/gky079\">10.1093/nar/gky079</a>.","ama":"Nikolic N, Bergmiller T, Vandervelde A, Albanese T, Gelens L, Moll I. Autoregulation of mazEF expression underlies growth heterogeneity in bacterial populations. <i>Nucleic Acids Research</i>. 2018;46(6):2918-2931. doi:<a href=\"https://doi.org/10.1093/nar/gky079\">10.1093/nar/gky079</a>","short":"N. Nikolic, T. Bergmiller, A. Vandervelde, T. Albanese, L. Gelens, I. Moll, Nucleic Acids Research 46 (2018) 2918–2931.","apa":"Nikolic, N., Bergmiller, T., Vandervelde, A., Albanese, T., Gelens, L., &#38; Moll, I. (2018). Autoregulation of mazEF expression underlies growth heterogeneity in bacterial populations. <i>Nucleic Acids Research</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/nar/gky079\">https://doi.org/10.1093/nar/gky079</a>","ista":"Nikolic N, Bergmiller T, Vandervelde A, Albanese T, Gelens L, Moll I. 2018. Autoregulation of mazEF expression underlies growth heterogeneity in bacterial populations. Nucleic Acids Research. 46(6), 2918–2931.","chicago":"Nikolic, Nela, Tobias Bergmiller, Alexandra Vandervelde, Tanino Albanese, Lendert Gelens, and Isabella Moll. “Autoregulation of MazEF Expression Underlies Growth Heterogeneity in Bacterial Populations.” <i>Nucleic Acids Research</i>. Oxford University Press, 2018. <a href=\"https://doi.org/10.1093/nar/gky079\">https://doi.org/10.1093/nar/gky079</a>."},"volume":46,"year":"2018","publication":"Nucleic Acids Research","intvolume":"        46","scopus_import":"1","quality_controlled":"1","status":"public","ddc":["576"],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"corr_author":"1","abstract":[{"lang":"eng","text":"The MazF toxin sequence-specifically cleaves single-stranded RNA upon various stressful conditions, and it is activated as a part of the mazEF toxin–antitoxin module in Escherichia coli. Although autoregulation of mazEF expression through the MazE antitoxin-dependent transcriptional repression has been biochemically characterized, less is known about post-transcriptional autoregulation, as well as how both of these autoregulatory features affect growth of single cells during conditions that promote MazF production. Here, we demonstrate post-transcriptional autoregulation of mazF expression dynamics by MazF cleaving its own transcript. Single-cell analyses of bacterial populations during ectopic MazF production indicated that two-level autoregulation of mazEF expression influences cell-to-cell growth rate heterogeneity. The increase in growth rate heterogeneity is governed by the MazE antitoxin, and tuned by the MazF-dependent mazF mRNA cleavage. Also, both autoregulatory features grant rapid exit from the stress caused by mazF overexpression. Time-lapse microscopy revealed that MazF-mediated cleavage of mazF mRNA leads to increased temporal variability in length of individual cells during ectopic mazF overexpression, as explained by a stochastic model indicating that mazEF mRNA cleavage underlies temporal fluctuations in MazF levels during stress."}],"oa":1,"file_date_updated":"2020-07-14T12:46:27Z","author":[{"first_name":"Nela","id":"42D9CABC-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-9068-6090","full_name":"Nikolic, Nela","last_name":"Nikolic"},{"orcid":"0000-0001-5396-4346","id":"2C471CFA-F248-11E8-B48F-1D18A9856A87","first_name":"Tobias","full_name":"Bergmiller, Tobias","last_name":"Bergmiller"},{"full_name":"Vandervelde, Alexandra","first_name":"Alexandra","last_name":"Vandervelde"},{"last_name":"Albanese","first_name":"Tanino","full_name":"Albanese, Tanino"},{"first_name":"Lendert","full_name":"Gelens, Lendert","last_name":"Gelens"},{"full_name":"Moll, Isabella","first_name":"Isabella","last_name":"Moll"}],"publisher":"Oxford University Press","month":"04","date_published":"2018-04-06T00:00:00Z","date_created":"2018-12-11T11:46:29Z","department":[{"_id":"CaGu"}],"date_updated":"2025-04-15T06:28:24Z","file":[{"file_name":"IST-2018-971-v1+1_2018_Nikoloc_Autoregulation_of.pdf","date_created":"2018-12-12T10:15:30Z","checksum":"3ff4f545c27e11a4cd20ccb30778793e","creator":"system","date_updated":"2020-07-14T12:46:27Z","access_level":"open_access","file_id":"5151","file_size":5027978,"relation":"main_file","content_type":"application/pdf"}]},{"date_published":"2018-10-22T00:00:00Z","month":"10","date_updated":"2023-10-10T13:28:49Z","date_created":"2018-12-11T11:44:19Z","department":[{"_id":"MaSe"}],"intvolume":"        98","scopus_import":"1","quality_controlled":"1","status":"public","volume":98,"year":"2018","publication":"Physical Review B","publisher":"American Physical Society","abstract":[{"text":"Recent realization of a kinetically constrained chain of Rydberg atoms by Bernien et al., [Nature (London) 551, 579 (2017)] resulted in the observation of unusual revivals in the many-body quantum dynamics. In our previous work [C. J. Turner et al., Nat. Phys. 14, 745 (2018)], such dynamics was attributed to the existence of “quantum scarred” eigenstates in the many-body spectrum of the experimentally realized model. Here, we present a detailed study of the eigenstate properties of the same model. We find that the majority of the eigenstates exhibit anomalous thermalization: the observable expectation values converge to their Gibbs ensemble values, but parametrically slower compared to the predictions of the eigenstate thermalization hypothesis (ETH). Amidst the thermalizing spectrum, we identify nonergodic eigenstates that strongly violate the ETH, whose number grows polynomially with system size. Previously, the same eigenstates were identified via large overlaps with certain product states, and were used to explain the revivals observed in experiment. Here, we find that these eigenstates, in addition to highly atypical expectation values of local observables, also exhibit subthermal entanglement entropy that scales logarithmically with the system size. Moreover, we identify an additional class of quantum scarred eigenstates, and discuss their manifestations in the dynamics starting from initial product states. We use forward scattering approximation to describe the structure and physical properties of quantum scarred eigenstates. Finally, we discuss the stability of quantum scars to various perturbations. We observe that quantum scars remain robust when the introduced perturbation is compatible with the forward scattering approximation. In contrast, the perturbations which most efficiently destroy quantum scars also lead to the restoration of “canonical” thermalization.","lang":"eng"}],"oa":1,"author":[{"last_name":"Turner","full_name":"Turner, C J","first_name":"C J"},{"orcid":"0000-0002-8443-1064","first_name":"Alexios","id":"36EBAD38-F248-11E8-B48F-1D18A9856A87","full_name":"Michailidis, Alexios","last_name":"Michailidis"},{"last_name":"Abanin","first_name":"D A","full_name":"Abanin, D A"},{"last_name":"Serbyn","first_name":"Maksym","id":"47809E7E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2399-5827","full_name":"Serbyn, Maksym"},{"full_name":"Papić, Z","first_name":"Z","last_name":"Papić"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_number":"155134","external_id":{"arxiv":["1806.10933"],"isi":["000447919100001"]},"publication_status":"published","title":"Quantum scarred eigenstates in a Rydberg atom chain: Entanglement, breakdown of thermalization, and stability to perturbations","citation":{"chicago":"Turner, C J, Alexios Michailidis, D A Abanin, Maksym Serbyn, and Z Papić. “Quantum Scarred Eigenstates in a Rydberg Atom Chain: Entanglement, Breakdown of Thermalization, and Stability to Perturbations.” <i>Physical Review B</i>. American Physical Society, 2018. <a href=\"https://doi.org/10.1103/PhysRevB.98.155134\">https://doi.org/10.1103/PhysRevB.98.155134</a>.","ista":"Turner CJ, Michailidis A, Abanin DA, Serbyn M, Papić Z. 2018. Quantum scarred eigenstates in a Rydberg atom chain: Entanglement, breakdown of thermalization, and stability to perturbations. Physical Review B. 98(15), 155134.","short":"C.J. Turner, A. Michailidis, D.A. Abanin, M. Serbyn, Z. Papić, Physical Review B 98 (2018).","ama":"Turner CJ, Michailidis A, Abanin DA, Serbyn M, Papić Z. Quantum scarred eigenstates in a Rydberg atom chain: Entanglement, breakdown of thermalization, and stability to perturbations. <i>Physical Review B</i>. 2018;98(15). doi:<a href=\"https://doi.org/10.1103/PhysRevB.98.155134\">10.1103/PhysRevB.98.155134</a>","ieee":"C. J. Turner, A. Michailidis, D. A. Abanin, M. Serbyn, and Z. Papić, “Quantum scarred eigenstates in a Rydberg atom chain: Entanglement, breakdown of thermalization, and stability to perturbations,” <i>Physical Review B</i>, vol. 98, no. 15. American Physical Society, 2018.","mla":"Turner, C. J., et al. “Quantum Scarred Eigenstates in a Rydberg Atom Chain: Entanglement, Breakdown of Thermalization, and Stability to Perturbations.” <i>Physical Review B</i>, vol. 98, no. 15, 155134, American Physical Society, 2018, doi:<a href=\"https://doi.org/10.1103/PhysRevB.98.155134\">10.1103/PhysRevB.98.155134</a>.","apa":"Turner, C. J., Michailidis, A., Abanin, D. A., Serbyn, M., &#38; Papić, Z. (2018). Quantum scarred eigenstates in a Rydberg atom chain: Entanglement, breakdown of thermalization, and stability to perturbations. <i>Physical Review B</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevB.98.155134\">https://doi.org/10.1103/PhysRevB.98.155134</a>"},"main_file_link":[{"url":"https://arxiv.org/abs/1806.10933","open_access":"1"}],"acknowledged_ssus":[{"_id":"ScienComp"}],"article_processing_charge":"No","doi":"10.1103/PhysRevB.98.155134","day":"22","_id":"44","fulldoi":"https://doi.org/10.1103/PhysRevB.98.155134","language":[{"iso":"eng"}],"oa_version":"Preprint","isi":1,"arxiv":1,"issue":"15","type":"journal_article","publist_id":"8010"},{"date_updated":"2023-09-19T10:09:40Z","date_created":"2018-12-11T11:46:31Z","acknowledgement":"We thank the referee for helpful suggestions that improved the presentation of the paper. We also acknowledge partial support by National Science Foundation Grant DMS-1363432 (R.L.F.), Austrian Science Fund (FWF) Project Nr. P 27533-N27 (P.T.N.), CONICYT (Chile) through CONICYT–PCHA/ Doctorado Nacional/2014, and Iniciativa Científica Milenio (Chile) through Millenium Nucleus RC–120002 “Física Matemática” (H.V.D.B.).\r\n","department":[{"_id":"RoSe"}],"date_published":"2018-03-01T00:00:00Z","month":"03","publisher":"Wiley-Blackwell","abstract":[{"text":"We prove that in Thomas–Fermi–Dirac–von Weizsäcker theory, a nucleus of charge Z &gt; 0 can bind at most Z + C electrons, where C is a universal constant. This result is obtained through a comparison with Thomas-Fermi theory which, as a by-product, gives bounds on the screened nuclear potential and the radius of the minimizer. A key ingredient of the proof is a novel technique to control the particles in the exterior region, which also applies to the liquid drop model with a nuclear background potential.","lang":"eng"}],"oa":1,"author":[{"full_name":"Frank, Rupert","first_name":"Rupert","last_name":"Frank"},{"id":"404092F4-F248-11E8-B48F-1D18A9856A87","first_name":"Nam","full_name":"Phan Thanh, Nam","last_name":"Phan Thanh"},{"last_name":"Van Den Bosch","first_name":"Hanne","full_name":"Van Den Bosch, Hanne"}],"intvolume":"        71","status":"public","quality_controlled":"1","volume":71,"year":"2018","publication":"Communications on Pure and Applied Mathematics","citation":{"apa":"Frank, R., Nam, P., &#38; Van Den Bosch, H. (2018). The ionization conjecture in Thomas–Fermi–Dirac–von Weizsäcker theory. <i>Communications on Pure and Applied Mathematics</i>. Wiley-Blackwell. <a href=\"https://doi.org/10.1002/cpa.21717\">https://doi.org/10.1002/cpa.21717</a>","mla":"Frank, Rupert, et al. “The Ionization Conjecture in Thomas–Fermi–Dirac–von Weizsäcker Theory.” <i>Communications on Pure and Applied Mathematics</i>, vol. 71, no. 3, Wiley-Blackwell, 2018, pp. 577–614, doi:<a href=\"https://doi.org/10.1002/cpa.21717\">10.1002/cpa.21717</a>.","ieee":"R. Frank, P. Nam, and H. Van Den Bosch, “The ionization conjecture in Thomas–Fermi–Dirac–von Weizsäcker theory,” <i>Communications on Pure and Applied Mathematics</i>, vol. 71, no. 3. Wiley-Blackwell, pp. 577–614, 2018.","short":"R. Frank, P. Nam, H. Van Den Bosch, Communications on Pure and Applied Mathematics 71 (2018) 577–614.","ama":"Frank R, Nam P, Van Den Bosch H. The ionization conjecture in Thomas–Fermi–Dirac–von Weizsäcker theory. <i>Communications on Pure and Applied Mathematics</i>. 2018;71(3):577-614. doi:<a href=\"https://doi.org/10.1002/cpa.21717\">10.1002/cpa.21717</a>","ista":"Frank R, Nam P, Van Den Bosch H. 2018. The ionization conjecture in Thomas–Fermi–Dirac–von Weizsäcker theory. Communications on Pure and Applied Mathematics. 71(3), 577–614.","chicago":"Frank, Rupert, Phan Nam, and Hanne Van Den Bosch. “The Ionization Conjecture in Thomas–Fermi–Dirac–von Weizsäcker Theory.” <i>Communications on Pure and Applied Mathematics</i>. Wiley-Blackwell, 2018. <a href=\"https://doi.org/10.1002/cpa.21717\">https://doi.org/10.1002/cpa.21717</a>."},"main_file_link":[{"url":"https://arxiv.org/abs/1606.07355","open_access":"1"}],"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","external_id":{"isi":["000422675800004"],"arxiv":["1606.07355"]},"publication_status":"published","title":"The ionization conjecture in Thomas–Fermi–Dirac–von Weizsäcker theory","isi":1,"arxiv":1,"issue":"3","article_type":"original","page":"577 - 614","type":"journal_article","publist_id":"7377","article_processing_charge":"No","doi":"10.1002/cpa.21717","day":"01","_id":"446","fulldoi":"https://doi.org/10.1002/cpa.21717","oa_version":"Preprint","language":[{"iso":"eng"}]},{"publisher":"Springer Nature","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"abstract":[{"text":"Around 150 million years ago, eusocial termites evolved from within the cockroaches, 50 million years before eusocial Hymenoptera, such as bees and ants, appeared. Here, we report the 2-Gb genome of the German cockroach, Blattella germanica, and the 1.3-Gb genome of the drywood termite Cryptotermes secundus. We show evolutionary signatures of termite eusociality by comparing the genomes and transcriptomes of three termites and the cockroach against the background of 16 other eusocial and non-eusocial insects. Dramatic adaptive changes in genes underlying the production and perception of pheromones confirm the importance of chemical communication in the termites. These are accompanied by major changes in gene regulation and the molecular evolution of caste determination. Many of these results parallel molecular mechanisms of eusocial evolution in Hymenoptera. However, the specific solutions are remarkably different, thus revealing a striking case of convergence in one of the major evolutionary transitions in biological complexity.","lang":"eng"}],"file_date_updated":"2020-07-14T12:46:30Z","oa":1,"author":[{"first_name":"Mark","full_name":"Harrison, Mark","last_name":"Harrison"},{"last_name":"Jongepier","full_name":"Jongepier, Evelien","first_name":"Evelien"},{"last_name":"Robertson","first_name":"Hugh","full_name":"Robertson, Hugh"},{"last_name":"Arning","first_name":"Nicolas","full_name":"Arning, Nicolas"},{"first_name":"Tristan","full_name":"Bitard Feildel, Tristan","last_name":"Bitard Feildel"},{"last_name":"Chao","full_name":"Chao, Hsu","first_name":"Hsu"},{"first_name":"Christopher","full_name":"Childers, Christopher","last_name":"Childers"},{"full_name":"Dinh, Huyen","first_name":"Huyen","last_name":"Dinh"},{"first_name":"Harshavardhan","full_name":"Doddapaneni, Harshavardhan","last_name":"Doddapaneni"},{"first_name":"Shannon","full_name":"Dugan, Shannon","last_name":"Dugan"},{"last_name":"Gowin","first_name":"Johannes","full_name":"Gowin, Johannes"},{"full_name":"Greiner, Carolin","first_name":"Carolin","last_name":"Greiner"},{"last_name":"Han","full_name":"Han, Yi","first_name":"Yi"},{"last_name":"Hu","full_name":"Hu, Haofu","first_name":"Haofu"},{"first_name":"Daniel","full_name":"Hughes, Daniel","last_name":"Hughes"},{"id":"4C0A3874-F248-11E8-B48F-1D18A9856A87","first_name":"Ann K","orcid":"0000-0001-8871-4961","full_name":"Huylmans, Ann K","last_name":"Huylmans"},{"first_name":"Karsten","full_name":"Kemena, Karsten","last_name":"Kemena"},{"full_name":"Kremer, Lukas","first_name":"Lukas","last_name":"Kremer"},{"first_name":"Sandra","full_name":"Lee, Sandra","last_name":"Lee"},{"last_name":"López Ezquerra","full_name":"López Ezquerra, Alberto","first_name":"Alberto"},{"last_name":"Mallet","first_name":"Ludovic","full_name":"Mallet, Ludovic"},{"first_name":"Jose","full_name":"Monroy Kuhn, Jose","last_name":"Monroy Kuhn"},{"last_name":"Moser","full_name":"Moser, Annabell","first_name":"Annabell"},{"last_name":"Murali","first_name":"Shwetha","full_name":"Murali, Shwetha"},{"last_name":"Muzny","first_name":"Donna","full_name":"Muzny, Donna"},{"first_name":"Saria","full_name":"Otani, Saria","last_name":"Otani"},{"last_name":"Piulachs","full_name":"Piulachs, Maria","first_name":"Maria"},{"first_name":"Monica","full_name":"Poelchau, Monica","last_name":"Poelchau"},{"full_name":"Qu, Jiaxin","first_name":"Jiaxin","last_name":"Qu"},{"first_name":"Florentine","full_name":"Schaub, Florentine","last_name":"Schaub"},{"last_name":"Wada Katsumata","first_name":"Ayako","full_name":"Wada Katsumata, Ayako"},{"first_name":"Kim","full_name":"Worley, Kim","last_name":"Worley"},{"last_name":"Xie","first_name":"Qiaolin","full_name":"Xie, Qiaolin"},{"full_name":"Ylla, Guillem","first_name":"Guillem","last_name":"Ylla"},{"first_name":"Michael","full_name":"Poulsen, Michael","last_name":"Poulsen"},{"last_name":"Gibbs","first_name":"Richard","full_name":"Gibbs, Richard"},{"last_name":"Schal","first_name":"Coby","full_name":"Schal, Coby"},{"last_name":"Richards","first_name":"Stephen","full_name":"Richards, Stephen"},{"last_name":"Belles","first_name":"Xavier","full_name":"Belles, Xavier"},{"full_name":"Korb, Judith","first_name":"Judith","last_name":"Korb"},{"full_name":"Bornberg Bauer, Erich","first_name":"Erich","last_name":"Bornberg Bauer"}],"intvolume":"         2","scopus_import":"1","ddc":["576"],"quality_controlled":"1","status":"public","volume":2,"year":"2018","publication":"Nature Ecology and Evolution","date_updated":"2023-09-11T14:10:57Z","file":[{"file_size":3730583,"file_id":"4731","relation":"main_file","content_type":"application/pdf","checksum":"874953136ac125e65f37971d3cabc5b7","file_name":"IST-2018-969-v1+1_2018_Huylmans_Hemimetabolous_genomes.pdf","date_created":"2018-12-12T10:09:08Z","creator":"system","access_level":"open_access","date_updated":"2020-07-14T12:46:30Z"}],"date_created":"2018-12-11T11:46:32Z","acknowledgement":"We thank O. Niehuis for allowing use of the unpublished E. danica genome, J. Gadau and C. Smith for comments and advice on the manuscript, and J. Schmitz for assistance with analyses and proofreading the manuscript. J.K. thanks Charles Darwin University (Australia), especially S. Garnett and the Horticulture and Aquaculture team, for providing logistic support to collect C. secundus. The Parks and Wildlife Commission, Northern Territory, the Department of the Environment, Water, Heritage and the Arts gave permission to collect (Permit number 36401) and export (Permit WT2010-6997) the termites. USDA is an equal opportunity provider and employer. M.C.H. and E.J. are supported by DFG grant BO2544/11-1 to E.B.-B. J.K. is supported by University of Osnabrück and DFG grant KO1895/16-1. X.B. and M.-D.P. are supported by Spanish Ministerio de Economía y Competitividad (CGL2012-36251 and CGL2015-64727-P to X.B., and CGL2016-76011-R to M.-D.P.), including FEDER funds, and by Catalan Government (2014 SGR 619). C.S. is supported by grants from the US Department of Housing and Urban Development (NCHHU-0017-13), the National Science Foundation (IOS-1557864), the Alfred P. Sloan Foundation (2013-5-35 MBE), the National Institute of Environmental Health Sciences (P30ES025128) to the Center for Human Health and the Environment, and the Blanton J. Whitmire Endowment. M.P. is supported by a Villum Kann Rasmussen Young Investigator Fellowship (VKR10101).","department":[{"_id":"BeVi"}],"date_published":"2018-02-05T00:00:00Z","month":"02","isi":1,"related_material":{"record":[{"status":"public","relation":"research_data","id":"9841"}]},"issue":"3","page":"557-566","type":"journal_article","pubrep_id":"969","publist_id":"7375","has_accepted_license":"1","article_processing_charge":"No","doi":"10.1038/s41559-017-0459-1","day":"05","_id":"448","oa_version":"Published Version","fulldoi":"https://doi.org/10.1038/s41559-017-0459-1","language":[{"iso":"eng"}],"citation":{"ista":"Harrison M, Jongepier E, Robertson H, Arning N, Bitard Feildel T, Chao H, Childers C, Dinh H, Doddapaneni H, Dugan S, Gowin J, Greiner C, Han Y, Hu H, Hughes D, Huylmans AK, Kemena K, Kremer L, Lee S, López Ezquerra A, Mallet L, Monroy Kuhn J, Moser A, Murali S, Muzny D, Otani S, Piulachs M, Poelchau M, Qu J, Schaub F, Wada Katsumata A, Worley K, Xie Q, Ylla G, Poulsen M, Gibbs R, Schal C, Richards S, Belles X, Korb J, Bornberg Bauer E. 2018. Hemimetabolous genomes reveal molecular basis of termite eusociality. Nature Ecology and Evolution. 2(3), 557–566.","chicago":"Harrison, Mark, Evelien Jongepier, Hugh Robertson, Nicolas Arning, Tristan Bitard Feildel, Hsu Chao, Christopher Childers, et al. “Hemimetabolous Genomes Reveal Molecular Basis of Termite Eusociality.” <i>Nature Ecology and Evolution</i>. Springer Nature, 2018. <a href=\"https://doi.org/10.1038/s41559-017-0459-1\">https://doi.org/10.1038/s41559-017-0459-1</a>.","apa":"Harrison, M., Jongepier, E., Robertson, H., Arning, N., Bitard Feildel, T., Chao, H., … Bornberg Bauer, E. (2018). Hemimetabolous genomes reveal molecular basis of termite eusociality. <i>Nature Ecology and Evolution</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41559-017-0459-1\">https://doi.org/10.1038/s41559-017-0459-1</a>","ieee":"M. Harrison <i>et al.</i>, “Hemimetabolous genomes reveal molecular basis of termite eusociality,” <i>Nature Ecology and Evolution</i>, vol. 2, no. 3. Springer Nature, pp. 557–566, 2018.","mla":"Harrison, Mark, et al. “Hemimetabolous Genomes Reveal Molecular Basis of Termite Eusociality.” <i>Nature Ecology and Evolution</i>, vol. 2, no. 3, Springer Nature, 2018, pp. 557–66, doi:<a href=\"https://doi.org/10.1038/s41559-017-0459-1\">10.1038/s41559-017-0459-1</a>.","ama":"Harrison M, Jongepier E, Robertson H, et al. Hemimetabolous genomes reveal molecular basis of termite eusociality. <i>Nature Ecology and Evolution</i>. 2018;2(3):557-566. doi:<a href=\"https://doi.org/10.1038/s41559-017-0459-1\">10.1038/s41559-017-0459-1</a>","short":"M. Harrison, E. Jongepier, H. Robertson, N. Arning, T. Bitard Feildel, H. Chao, C. Childers, H. Dinh, H. Doddapaneni, S. Dugan, J. Gowin, C. Greiner, Y. Han, H. Hu, D. Hughes, A.K. Huylmans, K. Kemena, L. Kremer, S. Lee, A. López Ezquerra, L. Mallet, J. Monroy Kuhn, A. Moser, S. Murali, D. Muzny, S. Otani, M. Piulachs, M. Poelchau, J. Qu, F. Schaub, A. Wada Katsumata, K. Worley, Q. Xie, G. Ylla, M. Poulsen, R. Gibbs, C. Schal, S. Richards, X. Belles, J. Korb, E. Bornberg Bauer, Nature Ecology and Evolution 2 (2018) 557–566."},"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","external_id":{"isi":["000426559600026"]},"publication_status":"published","title":"Hemimetabolous genomes reveal molecular basis of termite eusociality"},{"department":[{"_id":"KrCh"}],"ec_funded":1,"date_created":"2018-12-11T11:46:34Z","acknowledgement":"This work was supported by the European Research Council (ERC) start grant 279307: Graph Games (C.K.), Austrian Science Fund (FWF) grant no P23499-N23 (C.K.), FWF\r\nNFN grant no S11407-N23 RiSE/SHiNE (C.K.), Office of Naval Research grant N00014-16-1-2914 (M.A.N.), National Cancer Institute grant CA179991 (M.A.N.) and by the John Templeton Foundation. J.G.R. is supported by an Erwin Schrödinger fellowship\r\n(Austrian Science Fund FWF J-3996). C.H. acknowledges generous support from the\r\nISTFELLOW program. The Program for Evolutionary Dynamics is supported in part by\r\na gift from B Wu and Eric Larson.","file":[{"creator":"system","access_level":"open_access","date_updated":"2020-07-14T12:46:31Z","checksum":"b6b90367545b4c615891c960ab0567f1","date_created":"2018-12-12T10:09:18Z","file_name":"IST-2018-964-v1+1_2018_Hilbe_Crosstalk_in.pdf","content_type":"application/pdf","relation":"main_file","file_size":843646,"file_id":"4741"}],"date_updated":"2025-04-15T06:30:05Z","month":"02","date_published":"2018-02-07T00:00:00Z","file_date_updated":"2020-07-14T12:46:31Z","oa":1,"author":[{"last_name":"Reiter","orcid":"0000-0002-0170-7353","first_name":"Johannes","id":"4A918E98-F248-11E8-B48F-1D18A9856A87","full_name":"Reiter, Johannes"},{"orcid":"0000-0001-5116-955X","id":"2FDF8F3C-F248-11E8-B48F-1D18A9856A87","first_name":"Christian","full_name":"Hilbe, Christian","last_name":"Hilbe"},{"last_name":"Rand","full_name":"Rand, David","first_name":"David"},{"last_name":"Chatterjee","full_name":"Chatterjee, Krishnendu","first_name":"Krishnendu","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4561-241X"},{"last_name":"Nowak","full_name":"Nowak, Martin","first_name":"Martin"}],"abstract":[{"lang":"eng","text":"Direct reciprocity is a mechanism for cooperation among humans. Many of our daily interactions are repeated. We interact repeatedly with our family, friends, colleagues, members of the local and even global community. In the theory of repeated games, it is a tacit assumption that the various games that a person plays simultaneously have no effect on each other. Here we introduce a general framework that allows us to analyze “crosstalk” between a player’s concurrent games. In the presence of crosstalk, the action a person experiences in one game can alter the person’s decision in another. We find that crosstalk impedes the maintenance of cooperation and requires stronger levels of forgiveness. The magnitude of the effect depends on the population structure. In more densely connected social groups, crosstalk has a stronger effect. A harsh retaliator, such as Tit-for-Tat, is unable to counteract crosstalk. The crosstalk framework provides a unified interpretation of direct and upstream reciprocity in the context of repeated games."}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"publisher":"Nature Publishing Group","volume":9,"year":"2018","publication":"Nature Communications","scopus_import":"1","ddc":["004"],"quality_controlled":"1","status":"public","intvolume":"         9","citation":{"apa":"Reiter, J., Hilbe, C., Rand, D., Chatterjee, K., &#38; Nowak, M. (2018). Crosstalk in concurrent repeated games impedes direct reciprocity and requires stronger levels of forgiveness. <i>Nature Communications</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/s41467-017-02721-8\">https://doi.org/10.1038/s41467-017-02721-8</a>","short":"J. Reiter, C. Hilbe, D. Rand, K. Chatterjee, M. Nowak, Nature Communications 9 (2018).","ama":"Reiter J, Hilbe C, Rand D, Chatterjee K, Nowak M. Crosstalk in concurrent repeated games impedes direct reciprocity and requires stronger levels of forgiveness. <i>Nature Communications</i>. 2018;9(1). doi:<a href=\"https://doi.org/10.1038/s41467-017-02721-8\">10.1038/s41467-017-02721-8</a>","ieee":"J. Reiter, C. Hilbe, D. Rand, K. Chatterjee, and M. Nowak, “Crosstalk in concurrent repeated games impedes direct reciprocity and requires stronger levels of forgiveness,” <i>Nature Communications</i>, vol. 9, no. 1. Nature Publishing Group, 2018.","mla":"Reiter, Johannes, et al. “Crosstalk in Concurrent Repeated Games Impedes Direct Reciprocity and Requires Stronger Levels of Forgiveness.” <i>Nature Communications</i>, vol. 9, no. 1, 555, Nature Publishing Group, 2018, doi:<a href=\"https://doi.org/10.1038/s41467-017-02721-8\">10.1038/s41467-017-02721-8</a>.","chicago":"Reiter, Johannes, Christian Hilbe, David Rand, Krishnendu Chatterjee, and Martin Nowak. “Crosstalk in Concurrent Repeated Games Impedes Direct Reciprocity and Requires Stronger Levels of Forgiveness.” <i>Nature Communications</i>. Nature Publishing Group, 2018. <a href=\"https://doi.org/10.1038/s41467-017-02721-8\">https://doi.org/10.1038/s41467-017-02721-8</a>.","ista":"Reiter J, Hilbe C, Rand D, Chatterjee K, Nowak M. 2018. Crosstalk in concurrent repeated games impedes direct reciprocity and requires stronger levels of forgiveness. Nature Communications. 9(1), 555."},"title":"Crosstalk in concurrent repeated games impedes direct reciprocity and requires stronger levels of forgiveness","external_id":{"isi":["000424318200001"]},"publication_status":"published","article_number":"555","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","pubrep_id":"964","type":"journal_article","has_accepted_license":"1","project":[{"grant_number":"279307","name":"Quantitative Graph Games: Theory and Applications","call_identifier":"FP7","_id":"2581B60A-B435-11E9-9278-68D0E5697425"},{"call_identifier":"FWF","_id":"2584A770-B435-11E9-9278-68D0E5697425","grant_number":"P 23499-N23","name":"Modern Graph Algorithmic Techniques in Formal Verification"},{"call_identifier":"FWF","_id":"25863FF4-B435-11E9-9278-68D0E5697425","name":"Game Theory","grant_number":"S11407"},{"_id":"25681D80-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","name":"International IST Postdoc Fellowship Programme","grant_number":"291734"}],"publist_id":"7368","isi":1,"issue":"1","day":"07","_id":"454","fulldoi":"https://doi.org/10.1038/s41467-017-02721-8","language":[{"iso":"eng"}],"oa_version":"Published Version","doi":"10.1038/s41467-017-02721-8","article_processing_charge":"No"},{"citation":{"ista":"Benedikter NP, Sok J, Solovej J. 2018. The Dirac–Frenkel principle for reduced density matrices and the Bogoliubov–de Gennes equations. Annales Henri Poincare. 19(4), 1167–1214.","chicago":"Benedikter, Niels P, Jérémy Sok, and Jan Solovej. “The Dirac–Frenkel Principle for Reduced Density Matrices and the Bogoliubov–de Gennes Equations.” <i>Annales Henri Poincare</i>. Birkhäuser, 2018. <a href=\"https://doi.org/10.1007/s00023-018-0644-z\">https://doi.org/10.1007/s00023-018-0644-z</a>.","apa":"Benedikter, N. P., Sok, J., &#38; Solovej, J. (2018). The Dirac–Frenkel principle for reduced density matrices and the Bogoliubov–de Gennes equations. <i>Annales Henri Poincare</i>. Birkhäuser. <a href=\"https://doi.org/10.1007/s00023-018-0644-z\">https://doi.org/10.1007/s00023-018-0644-z</a>","mla":"Benedikter, Niels P., et al. “The Dirac–Frenkel Principle for Reduced Density Matrices and the Bogoliubov–de Gennes Equations.” <i>Annales Henri Poincare</i>, vol. 19, no. 4, Birkhäuser, 2018, pp. 1167–214, doi:<a href=\"https://doi.org/10.1007/s00023-018-0644-z\">10.1007/s00023-018-0644-z</a>.","ieee":"N. P. Benedikter, J. Sok, and J. Solovej, “The Dirac–Frenkel principle for reduced density matrices and the Bogoliubov–de Gennes equations,” <i>Annales Henri Poincare</i>, vol. 19, no. 4. Birkhäuser, pp. 1167–1214, 2018.","ama":"Benedikter NP, Sok J, Solovej J. The Dirac–Frenkel principle for reduced density matrices and the Bogoliubov–de Gennes equations. <i>Annales Henri Poincare</i>. 2018;19(4):1167-1214. doi:<a href=\"https://doi.org/10.1007/s00023-018-0644-z\">10.1007/s00023-018-0644-z</a>","short":"N.P. Benedikter, J. Sok, J. Solovej, Annales Henri Poincare 19 (2018) 1167–1214."},"publication_status":"published","external_id":{"isi":["000427578900006"]},"title":"The Dirac–Frenkel principle for reduced density matrices and the Bogoliubov–de Gennes equations","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","publist_id":"7367","has_accepted_license":"1","type":"journal_article","pubrep_id":"993","issue":"4","isi":1,"page":"1167 - 1214","doi":"10.1007/s00023-018-0644-z","fulldoi":"https://doi.org/10.1007/s00023-018-0644-z","oa_version":"Published Version","language":[{"iso":"eng"}],"day":"01","_id":"455","article_processing_charge":"No","date_created":"2018-12-11T11:46:34Z","acknowledgement":"Open access funding provided by Institute of Science and Technology (IST Austria). The authors acknowledge support by ERC Advanced Grant 321029 and by VILLUM FONDEN via the QMATH Centre of Excellence (Grant No. 10059). The authors would like to thank Sébastien Breteaux, Enno Lenzmann, Mathieu Lewin and Jochen Schmid for comments and discussions about well-posedness of the Bogoliubov–de Gennes equations.","department":[{"_id":"RoSe"}],"date_updated":"2024-10-09T20:58:43Z","file":[{"checksum":"883eeccba8384ad7fcaa28761d99a0fa","file_name":"IST-2018-993-v1+1_2018_Benedikter_Dirac.pdf","date_created":"2018-12-12T10:11:57Z","creator":"system","access_level":"open_access","date_updated":"2020-07-14T12:46:31Z","file_size":923252,"file_id":"4914","content_type":"application/pdf","relation":"main_file"}],"month":"04","date_published":"2018-04-01T00:00:00Z","abstract":[{"lang":"eng","text":"The derivation of effective evolution equations is central to the study of non-stationary quantum many-body systems, and widely used in contexts such as superconductivity, nuclear physics, Bose–Einstein condensation and quantum chemistry. We reformulate the Dirac–Frenkel approximation principle in terms of reduced density matrices and apply it to fermionic and bosonic many-body systems. We obtain the Bogoliubov–de Gennes and Hartree–Fock–Bogoliubov equations, respectively. While we do not prove quantitative error estimates, our formulation does show that the approximation is optimal within the class of quasifree states. Furthermore, we prove well-posedness of the Bogoliubov–de Gennes equations in energy space and discuss conserved quantities"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"corr_author":"1","author":[{"orcid":"0000-0002-1071-6091","id":"3DE6C32A-F248-11E8-B48F-1D18A9856A87","first_name":"Niels P","full_name":"Benedikter, Niels P","last_name":"Benedikter"},{"first_name":"Jérémy","full_name":"Sok, Jérémy","last_name":"Sok"},{"full_name":"Solovej, Jan","first_name":"Jan","last_name":"Solovej"}],"file_date_updated":"2020-07-14T12:46:31Z","oa":1,"publisher":"Birkhäuser","alternative_title":["Annales Henri Poincare"],"publication":"Annales Henri Poincare","year":"2018","volume":19,"intvolume":"        19","status":"public","ddc":["510","539"],"quality_controlled":"1","scopus_import":"1"},{"publication":"Science Translational Medicine","fulldoi":"https://doi.org/10.1126/scitranslmed.aar7514","oa_version":"None","language":[{"iso":"eng"}],"_id":"456","volume":10,"day":"10","year":"2018","doi":"10.1126/scitranslmed.aar7514","status":"public","quality_controlled":"1","scopus_import":1,"intvolume":"        10","author":[{"last_name":"Novarino","first_name":"Gaia","id":"3E57A680-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-7673-7178","full_name":"Novarino, Gaia"}],"publist_id":"7365","type":"journal_article","corr_author":"1","abstract":[{"text":"Inhibition of the endoplasmic reticulum stress pathway may hold the key to Zika virus-associated microcephaly treatment. ","lang":"eng"}],"issue":"423","publisher":"American Association for the Advancement of Science","title":"Zika-associated microcephaly: Reduce the stress and race for the treatment","month":"01","publication_status":"published","user_id":"4435EBFC-F248-11E8-B48F-1D18A9856A87","article_number":"eaar7514","date_published":"2018-01-10T00:00:00Z","department":[{"_id":"GaNo"}],"date_created":"2018-12-11T11:46:34Z","date_updated":"2024-10-09T20:58:46Z","citation":{"mla":"Novarino, Gaia. “Zika-Associated Microcephaly: Reduce the Stress and Race for the Treatment.” <i>Science Translational Medicine</i>, vol. 10, no. 423, eaar7514, American Association for the Advancement of Science, 2018, doi:<a href=\"https://doi.org/10.1126/scitranslmed.aar7514\">10.1126/scitranslmed.aar7514</a>.","ieee":"G. Novarino, “Zika-associated microcephaly: Reduce the stress and race for the treatment,” <i>Science Translational Medicine</i>, vol. 10, no. 423. American Association for the Advancement of Science, 2018.","short":"G. Novarino, Science Translational Medicine 10 (2018).","ama":"Novarino G. Zika-associated microcephaly: Reduce the stress and race for the treatment. <i>Science Translational Medicine</i>. 2018;10(423). doi:<a href=\"https://doi.org/10.1126/scitranslmed.aar7514\">10.1126/scitranslmed.aar7514</a>","apa":"Novarino, G. (2018). Zika-associated microcephaly: Reduce the stress and race for the treatment. <i>Science Translational Medicine</i>. American Association for the Advancement of Science. <a href=\"https://doi.org/10.1126/scitranslmed.aar7514\">https://doi.org/10.1126/scitranslmed.aar7514</a>","ista":"Novarino G. 2018. Zika-associated microcephaly: Reduce the stress and race for the treatment. Science Translational Medicine. 10(423), eaar7514.","chicago":"Novarino, Gaia. “Zika-Associated Microcephaly: Reduce the Stress and Race for the Treatment.” <i>Science Translational Medicine</i>. American Association for the Advancement of Science, 2018. <a href=\"https://doi.org/10.1126/scitranslmed.aar7514\">https://doi.org/10.1126/scitranslmed.aar7514</a>."}},{"day":"01","_id":"457","language":[{"iso":"eng"}],"fulldoi":"https://doi.org/10.1038/s41559-017-0424-z","oa_version":"None","doi":"10.1038/s41559-017-0424-z","article_processing_charge":"No","type":"journal_article","project":[{"name":"International IST Postdoc Fellowship Programme","grant_number":"291734","_id":"25681D80-B435-11E9-9278-68D0E5697425","call_identifier":"FP7"},{"_id":"251BCBEC-B435-11E9-9278-68D0E5697425","grant_number":"RGY0079/2011","name":"Multi-Level Conflicts in Evolutionary Dynamics of Restriction-Modification Systems"},{"name":"Effects of Stochasticity on the Function of Restriction-Modi cation Systems at the Single-Cell Level","grant_number":"24210","_id":"251D65D8-B435-11E9-9278-68D0E5697425"}],"publist_id":"7364","page":"359 - 366","isi":1,"related_material":{"record":[{"id":"202","status":"public","relation":"dissertation_contains"}]},"issue":"2","title":"Phage-host population dynamics promotes prophage acquisition in bacteria with innate immunity","external_id":{"isi":["000426516400027"]},"publication_status":"published","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","citation":{"ieee":"M. Pleska, M. Lang, D. Refardt, B. Levin, and C. C. Guet, “Phage-host population dynamics promotes prophage acquisition in bacteria with innate immunity,” <i>Nature Ecology and Evolution</i>, vol. 2, no. 2. Springer Nature, pp. 359–366, 2018.","mla":"Pleska, Maros, et al. “Phage-Host Population Dynamics Promotes Prophage Acquisition in Bacteria with Innate Immunity.” <i>Nature Ecology and Evolution</i>, vol. 2, no. 2, Springer Nature, 2018, pp. 359–66, doi:<a href=\"https://doi.org/10.1038/s41559-017-0424-z\">10.1038/s41559-017-0424-z</a>.","short":"M. Pleska, M. Lang, D. Refardt, B. Levin, C.C. Guet, Nature Ecology and Evolution 2 (2018) 359–366.","ama":"Pleska M, Lang M, Refardt D, Levin B, Guet CC. Phage-host population dynamics promotes prophage acquisition in bacteria with innate immunity. <i>Nature Ecology and Evolution</i>. 2018;2(2):359-366. doi:<a href=\"https://doi.org/10.1038/s41559-017-0424-z\">10.1038/s41559-017-0424-z</a>","apa":"Pleska, M., Lang, M., Refardt, D., Levin, B., &#38; Guet, C. C. (2018). Phage-host population dynamics promotes prophage acquisition in bacteria with innate immunity. <i>Nature Ecology and Evolution</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41559-017-0424-z\">https://doi.org/10.1038/s41559-017-0424-z</a>","ista":"Pleska M, Lang M, Refardt D, Levin B, Guet CC. 2018. Phage-host population dynamics promotes prophage acquisition in bacteria with innate immunity. Nature Ecology and Evolution. 2(2), 359–366.","chicago":"Pleska, Maros, Moritz Lang, Dominik Refardt, Bruce Levin, and Calin C Guet. “Phage-Host Population Dynamics Promotes Prophage Acquisition in Bacteria with Innate Immunity.” <i>Nature Ecology and Evolution</i>. Springer Nature, 2018. <a href=\"https://doi.org/10.1038/s41559-017-0424-z\">https://doi.org/10.1038/s41559-017-0424-z</a>."},"volume":2,"year":"2018","publication":"Nature Ecology and Evolution","scopus_import":"1","status":"public","quality_controlled":"1","intvolume":"         2","author":[{"full_name":"Pleska, Maros","id":"4569785E-F248-11E8-B48F-1D18A9856A87","first_name":"Maros","orcid":"0000-0001-7460-7479","last_name":"Pleska"},{"last_name":"Lang","first_name":"Moritz","id":"29E0800A-F248-11E8-B48F-1D18A9856A87","full_name":"Lang, Moritz"},{"first_name":"Dominik","full_name":"Refardt, Dominik","last_name":"Refardt"},{"last_name":"Levin","full_name":"Levin, Bruce","first_name":"Bruce"},{"last_name":"Guet","id":"47F8433E-F248-11E8-B48F-1D18A9856A87","first_name":"Calin C","orcid":"0000-0001-6220-2052","full_name":"Guet, Calin C"}],"corr_author":"1","abstract":[{"text":"Temperate bacteriophages integrate in bacterial genomes as prophages and represent an important source of genetic variation for bacterial evolution, frequently transmitting fitness-augmenting genes such as toxins responsible for virulence of major pathogens. However, only a fraction of bacteriophage infections are lysogenic and lead to prophage acquisition, whereas the majority are lytic and kill the infected bacteria. Unless able to discriminate lytic from lysogenic infections, mechanisms of immunity to bacteriophages are expected to act as a double-edged sword and increase the odds of survival at the cost of depriving bacteria of potentially beneficial prophages. We show that although restriction-modification systems as mechanisms of innate immunity prevent both lytic and lysogenic infections indiscriminately in individual bacteria, they increase the number of prophage-acquiring individuals at the population level. We find that this counterintuitive result is a consequence of phage-host population dynamics, in which restriction-modification systems delay infection onset until bacteria reach densities at which the probability of lysogeny increases. These results underscore the importance of population-level dynamics as a key factor modulating costs and benefits of immunity to temperate bacteriophages","lang":"eng"}],"publisher":"Springer Nature","month":"02","date_published":"2018-02-01T00:00:00Z","department":[{"_id":"CaGu"},{"_id":"GaTk"}],"ec_funded":1,"date_created":"2018-12-11T11:46:35Z","date_updated":"2026-04-08T14:19:43Z"},{"publisher":"American Mathematical Society","corr_author":"1","abstract":[{"lang":"eng","text":"We consider congruences of straight lines in a plane with the combinatorics of the square grid, with all elementary quadrilaterals possessing an incircle. It is shown that all the vertices of such nets (we call them incircular or IC-nets) lie on confocal conics. Our main new results are on checkerboard IC-nets in the plane. These are congruences of straight lines in the plane with the combinatorics of the square grid, combinatorially colored as a checkerboard, such that all black coordinate quadrilaterals possess inscribed circles. We show how this larger class of IC-nets appears quite naturally in Laguerre geometry of oriented planes and spheres and leads to new remarkable incidence theorems. Most of our results are valid in hyperbolic and spherical geometries as well. We present also generalizations in spaces of higher dimension, called checkerboard IS-nets. The construction of these nets is based on a new 9 inspheres incidence theorem."}],"oa":1,"author":[{"last_name":"Akopyan","full_name":"Akopyan, Arseniy","orcid":"0000-0002-2548-617X","id":"430D2C90-F248-11E8-B48F-1D18A9856A87","first_name":"Arseniy"},{"last_name":"Bobenko","first_name":"Alexander","full_name":"Bobenko, Alexander"}],"intvolume":"       370","scopus_import":"1","status":"public","quality_controlled":"1","year":"2018","volume":370,"publication":"Transactions of the American Mathematical Society","date_updated":"2025-06-04T08:06:10Z","ec_funded":1,"acknowledgement":"DFG Collaborative Research Center TRR 109 “Discretization in Geometry and Dynamics”; People Programme (Marie Curie Actions) of the European Union’s Seventh Framework Programme (FP7/2007-2013) REA grant agreement n◦[291734]","date_created":"2018-12-11T11:46:35Z","department":[{"_id":"HeEd"}],"date_published":"2018-04-01T00:00:00Z","month":"04","isi":1,"arxiv":1,"issue":"4","page":"2825 - 2854","type":"journal_article","project":[{"name":"International IST Postdoc Fellowship Programme","grant_number":"291734","call_identifier":"FP7","_id":"25681D80-B435-11E9-9278-68D0E5697425"}],"publist_id":"7363","article_processing_charge":"No","doi":"10.1090/tran/7292","_id":"458","day":"01","oa_version":"Preprint","fulldoi":"https://doi.org/10.1090/tran/7292","language":[{"iso":"eng"}],"citation":{"ista":"Akopyan A, Bobenko A. 2018. Incircular nets and confocal conics. Transactions of the American Mathematical Society. 370(4), 2825–2854.","chicago":"Akopyan, Arseniy, and Alexander Bobenko. “Incircular Nets and Confocal Conics.” <i>Transactions of the American Mathematical Society</i>. American Mathematical Society, 2018. <a href=\"https://doi.org/10.1090/tran/7292\">https://doi.org/10.1090/tran/7292</a>.","ieee":"A. Akopyan and A. Bobenko, “Incircular nets and confocal conics,” <i>Transactions of the American Mathematical Society</i>, vol. 370, no. 4. American Mathematical Society, pp. 2825–2854, 2018.","mla":"Akopyan, Arseniy, and Alexander Bobenko. “Incircular Nets and Confocal Conics.” <i>Transactions of the American Mathematical Society</i>, vol. 370, no. 4, American Mathematical Society, 2018, pp. 2825–54, doi:<a href=\"https://doi.org/10.1090/tran/7292\">10.1090/tran/7292</a>.","ama":"Akopyan A, Bobenko A. Incircular nets and confocal conics. <i>Transactions of the American Mathematical Society</i>. 2018;370(4):2825-2854. doi:<a href=\"https://doi.org/10.1090/tran/7292\">10.1090/tran/7292</a>","short":"A. Akopyan, A. Bobenko, Transactions of the American Mathematical Society 370 (2018) 2825–2854.","apa":"Akopyan, A., &#38; Bobenko, A. (2018). Incircular nets and confocal conics. <i>Transactions of the American Mathematical Society</i>. American Mathematical Society. <a href=\"https://doi.org/10.1090/tran/7292\">https://doi.org/10.1090/tran/7292</a>"},"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1602.04637"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","external_id":{"arxiv":["1602.04637"],"isi":["000423197800019"]},"publication_status":"published","title":"Incircular nets and confocal conics"},{"date_updated":"2023-09-11T12:55:03Z","date_created":"2018-12-11T11:44:20Z","acknowledgement":"F.P. acknowledges the sup- port of the DFG Research Unit FOR 1807 through Grants No. PO 1370/2-1 and No. TRR80, the Nanosystems Initiative Munich (NIM) by the German Excellence Initiative, and the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (Grant Agreement No. 771537). N.Y.Y. acknowledges support from the NSF (PHY-1654740), the ARO STIR program, and a Google research award.","department":[{"_id":"MaSe"}],"date_published":"2018-10-15T00:00:00Z","month":"10","publisher":"American Physical Society","abstract":[{"lang":"eng","text":"We analyze a disordered central spin model, where a central spin interacts equally with each spin in a periodic one-dimensional (1D) random-field Heisenberg chain. If the Heisenberg chain is initially in the many-body localized (MBL) phase, we find that the coupling to the central spin suffices to delocalize the chain for a substantial range of coupling strengths. We calculate the phase diagram of the model and identify the phase boundary between the MBL and ergodic phase. Within the localized phase, the central spin significantly enhances the rate of the logarithmic entanglement growth and its saturation value. We attribute the increase in entanglement entropy to a nonextensive enhancement of magnetization fluctuations induced by the central spin. Finally, we demonstrate that correlation functions of the central spin can be utilized to distinguish between MBL and ergodic phases of the 1D chain. Hence, we propose the use of a central spin as a possible experimental probe to identify the MBL phase."}],"oa":1,"author":[{"last_name":"Hetterich","full_name":"Hetterich, Daniel","first_name":"Daniel"},{"first_name":"Norman","full_name":"Yao, Norman","last_name":"Yao"},{"full_name":"Serbyn, Maksym","orcid":"0000-0002-2399-5827","first_name":"Maksym","id":"47809E7E-F248-11E8-B48F-1D18A9856A87","last_name":"Serbyn"},{"last_name":"Pollmann","first_name":"Frank","full_name":"Pollmann, Frank"},{"first_name":"Björn","full_name":"Trauzettel, Björn","last_name":"Trauzettel"}],"intvolume":"        98","scopus_import":"1","quality_controlled":"1","status":"public","volume":98,"year":"2018","publication":"Physical Review B","citation":{"chicago":"Hetterich, Daniel, Norman Yao, Maksym Serbyn, Frank Pollmann, and Björn Trauzettel. “Detection and Characterization of Many-Body Localization in Central Spin Models.” <i>Physical Review B</i>. American Physical Society, 2018. <a href=\"https://doi.org/10.1103/PhysRevB.98.161122\">https://doi.org/10.1103/PhysRevB.98.161122</a>.","ista":"Hetterich D, Yao N, Serbyn M, Pollmann F, Trauzettel B. 2018. Detection and characterization of many-body localization in central spin models. Physical Review B. 98(16), 161122.","apa":"Hetterich, D., Yao, N., Serbyn, M., Pollmann, F., &#38; Trauzettel, B. (2018). Detection and characterization of many-body localization in central spin models. <i>Physical Review B</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevB.98.161122\">https://doi.org/10.1103/PhysRevB.98.161122</a>","short":"D. Hetterich, N. Yao, M. Serbyn, F. Pollmann, B. Trauzettel, Physical Review B 98 (2018).","ama":"Hetterich D, Yao N, Serbyn M, Pollmann F, Trauzettel B. Detection and characterization of many-body localization in central spin models. <i>Physical Review B</i>. 2018;98(16). doi:<a href=\"https://doi.org/10.1103/PhysRevB.98.161122\">10.1103/PhysRevB.98.161122</a>","ieee":"D. Hetterich, N. Yao, M. Serbyn, F. Pollmann, and B. Trauzettel, “Detection and characterization of many-body localization in central spin models,” <i>Physical Review B</i>, vol. 98, no. 16. American Physical Society, 2018.","mla":"Hetterich, Daniel, et al. “Detection and Characterization of Many-Body Localization in Central Spin Models.” <i>Physical Review B</i>, vol. 98, no. 16, 161122, American Physical Society, 2018, doi:<a href=\"https://doi.org/10.1103/PhysRevB.98.161122\">10.1103/PhysRevB.98.161122</a>."},"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1806.08316"}],"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","article_number":"161122","external_id":{"isi":["000448596500002"],"arxiv":["1806.08316"]},"publication_status":"published","title":"Detection and characterization of many-body localization in central spin models","arxiv":1,"isi":1,"issue":"16","article_type":"original","type":"journal_article","publist_id":"8008","article_processing_charge":"No","doi":"10.1103/PhysRevB.98.161122","_id":"46","day":"15","fulldoi":"https://doi.org/10.1103/PhysRevB.98.161122","language":[{"iso":"eng"}],"oa_version":"Preprint"},{"date_published":"2018-05-01T00:00:00Z","month":"05","file":[{"relation":"main_file","content_type":"application/pdf","file_id":"7042","file_size":1937976,"date_updated":"2020-07-14T12:46:32Z","access_level":"open_access","creator":"dernst","file_name":"2018_PlantCellEnv_Fan.pdf","date_created":"2019-11-18T16:22:22Z","checksum":"6a20f843565f962cb20281cdf5e40914"}],"date_updated":"2023-09-13T09:03:18Z","department":[{"_id":"JiFr"}],"acknowledgement":"This work was supported by the National Natural Science Foundation of China (31571464, 31371438 and 31070222 to Q.S.Q.), the National Basic Research Program of China (973 project, 2013CB429904 to Q.S.Q.), the Research Fund for the Doctoral Program of Higher Education of China (20130211110001 to Q.S.Q.), the Ministry of Education, Youth and Sports of the Czech Republic (the National Program for Sustainability I, LO1204), and The Czech Science Foundation GAČR (GA13–40637S) to JF. We thank Dr. Tom J. Guilfoyle for DR5::GUS line and Dr. Jia Li for pBIB‐RFP vector and DR5::GFP line. We thank Liping Guan and Yang Zhao for their help with the confocal microscope assay. ","date_created":"2018-12-11T11:46:36Z","scopus_import":"1","pmid":1,"ddc":["580"],"quality_controlled":"1","status":"public","intvolume":"        41","volume":41,"year":"2018","publication":"Plant, Cell and Environment","publisher":"Wiley-Blackwell","oa":1,"file_date_updated":"2020-07-14T12:46:32Z","author":[{"full_name":"Fan, Ligang","first_name":"Ligang","last_name":"Fan"},{"first_name":"Lei","full_name":"Zhao, Lei","last_name":"Zhao"},{"last_name":"Hu","full_name":"Hu, Wei","first_name":"Wei"},{"last_name":"Li","first_name":"Weina","full_name":"Li, Weina"},{"last_name":"Novák","full_name":"Novák, Ondřej","first_name":"Ondřej"},{"full_name":"Strnad, Miroslav","first_name":"Miroslav","last_name":"Strnad"},{"last_name":"Simon","full_name":"Simon, Sibu","orcid":"0000-0002-1998-6741","first_name":"Sibu","id":"4542EF9A-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Friml, Jirí","id":"4159519E-F248-11E8-B48F-1D18A9856A87","first_name":"Jirí","orcid":"0000-0002-8302-7596","last_name":"Friml"},{"full_name":"Shen, Jinbo","first_name":"Jinbo","last_name":"Shen"},{"last_name":"Jiang","full_name":"Jiang, Liwen","first_name":"Liwen"},{"first_name":"Quan","full_name":"Qiu, Quan","last_name":"Qiu"}],"tmp":{"name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)","short":"CC BY-NC (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","image":"/images/cc_by_nc.png"},"abstract":[{"text":"AtNHX5 and AtNHX6 are endosomal Na+,K+/H+ antiporters that are critical for growth and development in Arabidopsis, but the mechanism behind their action remains unknown. Here, we report that AtNHX5 and AtNHX6, functioning as H+ leak, control auxin homeostasis and auxin-mediated development. We found that nhx5 nhx6 exhibited growth variations of auxin-related defects. We further showed that nhx5 nhx6 was affected in auxin homeostasis. Genetic analysis showed that AtNHX5 and AtNHX6 were required for the function of the ER-localized auxin transporter PIN5. Although AtNHX5 and AtNHX6 were co-localized with PIN5 at ER, they did not interact directly. Instead, the conserved acidic residues in AtNHX5 and AtNHX6, which are essential for exchange activity, were required for PIN5 function. AtNHX5 and AtNHX6 regulated the pH in ER. Overall, AtNHX5 and AtNHX6 may regulate auxin transport across the ER via the pH gradient created by their transport activity. H+-leak pathway provides a fine-tuning mechanism that controls cellular auxin fluxes. ","lang":"eng"}],"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","title":"NHX antiporters regulate the pH of endoplasmic reticulum and auxin-mediated development","external_id":{"isi":["000426870500012"],"pmid":["29360148"]},"publication_status":"published","citation":{"ista":"Fan L, Zhao L, Hu W, Li W, Novák O, Strnad M, Simon S, Friml J, Shen J, Jiang L, Qiu Q. 2018. NHX antiporters regulate the pH of endoplasmic reticulum and auxin-mediated development. Plant, Cell and Environment. 41, 850–864.","chicago":"Fan, Ligang, Lei Zhao, Wei Hu, Weina Li, Ondřej Novák, Miroslav Strnad, Sibu Simon, et al. “NHX Antiporters Regulate the PH of Endoplasmic Reticulum and Auxin-Mediated Development.” <i>Plant, Cell and Environment</i>. Wiley-Blackwell, 2018. <a href=\"https://doi.org/10.1111/pce.13153\">https://doi.org/10.1111/pce.13153</a>.","apa":"Fan, L., Zhao, L., Hu, W., Li, W., Novák, O., Strnad, M., … Qiu, Q. (2018). NHX antiporters regulate the pH of endoplasmic reticulum and auxin-mediated development. <i>Plant, Cell and Environment</i>. Wiley-Blackwell. <a href=\"https://doi.org/10.1111/pce.13153\">https://doi.org/10.1111/pce.13153</a>","ieee":"L. Fan <i>et al.</i>, “NHX antiporters regulate the pH of endoplasmic reticulum and auxin-mediated development,” <i>Plant, Cell and Environment</i>, vol. 41. Wiley-Blackwell, pp. 850–864, 2018.","mla":"Fan, Ligang, et al. “NHX Antiporters Regulate the PH of Endoplasmic Reticulum and Auxin-Mediated Development.” <i>Plant, Cell and Environment</i>, vol. 41, Wiley-Blackwell, 2018, pp. 850–64, doi:<a href=\"https://doi.org/10.1111/pce.13153\">10.1111/pce.13153</a>.","short":"L. Fan, L. Zhao, W. Hu, W. Li, O. Novák, M. Strnad, S. Simon, J. Friml, J. Shen, L. Jiang, Q. Qiu, Plant, Cell and Environment 41 (2018) 850–864.","ama":"Fan L, Zhao L, Hu W, et al. NHX antiporters regulate the pH of endoplasmic reticulum and auxin-mediated development. <i>Plant, Cell and Environment</i>. 2018;41:850-864. doi:<a href=\"https://doi.org/10.1111/pce.13153\">10.1111/pce.13153</a>"},"article_processing_charge":"No","_id":"462","day":"01","oa_version":"Submitted Version","fulldoi":"https://doi.org/10.1111/pce.13153","language":[{"iso":"eng"}],"doi":"10.1111/pce.13153","article_type":"original","page":"850 - 864","isi":1,"type":"journal_article","publist_id":"7359","has_accepted_license":"1"},{"article_processing_charge":"No","doi":"10.1016/j.jbiotec.2018.01.008","language":[{"iso":"eng"}],"fulldoi":"https://doi.org/10.1016/j.jbiotec.2018.01.008","oa_version":"None","day":"20","_id":"503","isi":1,"page":"40 - 52","publist_id":"7317","type":"journal_article","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","publication_status":"published","external_id":{"isi":["000425715100006"]},"title":"Lack of cations in flow cytometry buffers affect fluorescence signals by reducing membrane stability and viability of Escherichia coli strains","citation":{"chicago":"Tomasek, Kathrin, Tobias Bergmiller, and Calin C Guet. “Lack of Cations in Flow Cytometry Buffers Affect Fluorescence Signals by Reducing Membrane Stability and Viability of Escherichia Coli Strains.” <i>Journal of Biotechnology</i>. Elsevier, 2018. <a href=\"https://doi.org/10.1016/j.jbiotec.2018.01.008\">https://doi.org/10.1016/j.jbiotec.2018.01.008</a>.","ista":"Tomasek K, Bergmiller T, Guet CC. 2018. Lack of cations in flow cytometry buffers affect fluorescence signals by reducing membrane stability and viability of Escherichia coli strains. Journal of Biotechnology. 268, 40–52.","apa":"Tomasek, K., Bergmiller, T., &#38; Guet, C. C. (2018). Lack of cations in flow cytometry buffers affect fluorescence signals by reducing membrane stability and viability of Escherichia coli strains. <i>Journal of Biotechnology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.jbiotec.2018.01.008\">https://doi.org/10.1016/j.jbiotec.2018.01.008</a>","ama":"Tomasek K, Bergmiller T, Guet CC. Lack of cations in flow cytometry buffers affect fluorescence signals by reducing membrane stability and viability of Escherichia coli strains. <i>Journal of Biotechnology</i>. 2018;268:40-52. doi:<a href=\"https://doi.org/10.1016/j.jbiotec.2018.01.008\">10.1016/j.jbiotec.2018.01.008</a>","short":"K. Tomasek, T. Bergmiller, C.C. Guet, Journal of Biotechnology 268 (2018) 40–52.","mla":"Tomasek, Kathrin, et al. “Lack of Cations in Flow Cytometry Buffers Affect Fluorescence Signals by Reducing Membrane Stability and Viability of Escherichia Coli Strains.” <i>Journal of Biotechnology</i>, vol. 268, Elsevier, 2018, pp. 40–52, doi:<a href=\"https://doi.org/10.1016/j.jbiotec.2018.01.008\">10.1016/j.jbiotec.2018.01.008</a>.","ieee":"K. Tomasek, T. Bergmiller, and C. C. Guet, “Lack of cations in flow cytometry buffers affect fluorescence signals by reducing membrane stability and viability of Escherichia coli strains,” <i>Journal of Biotechnology</i>, vol. 268. Elsevier, pp. 40–52, 2018."},"acknowledged_ssus":[{"_id":"Bio"}],"intvolume":"       268","quality_controlled":"1","status":"public","scopus_import":"1","publication":"Journal of Biotechnology","year":"2018","volume":268,"publisher":"Elsevier","abstract":[{"text":"Buffers are essential for diluting bacterial cultures for flow cytometry analysis in order to study bacterial physiology and gene expression parameters based on fluorescence signals. Using a variety of constitutively expressed fluorescent proteins in Escherichia coli K-12 strain MG1655, we found strong artifactual changes in fluorescence levels after dilution into the commonly used flow cytometry buffer phosphate-buffered saline (PBS) and two other buffer solutions, Tris-HCl and M9 salts. These changes appeared very rapidly after dilution, and were linked to increased membrane permeability and loss in cell viability. We observed buffer-related effects in several different E. coli strains, K-12, C and W, but not E. coli B, which can be partially explained by differences in lipopolysaccharide (LPS) and outer membrane composition. Supplementing the buffers with divalent cations responsible for outer membrane stability, Mg2+ and Ca2+, preserved fluorescence signals, membrane integrity and viability of E. coli. Thus, stabilizing the bacterial outer membrane is essential for precise and unbiased measurements of fluorescence parameters using flow cytometry.","lang":"eng"}],"corr_author":"1","author":[{"last_name":"Tomasek","full_name":"Tomasek, Kathrin","orcid":"0000-0003-3768-877X","first_name":"Kathrin","id":"3AEC8556-F248-11E8-B48F-1D18A9856A87"},{"orcid":"0000-0001-5396-4346","id":"2C471CFA-F248-11E8-B48F-1D18A9856A87","first_name":"Tobias","full_name":"Bergmiller, Tobias","last_name":"Bergmiller"},{"full_name":"Guet, Calin C","first_name":"Calin C","id":"47F8433E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6220-2052","last_name":"Guet"}],"date_published":"2018-02-20T00:00:00Z","month":"02","date_updated":"2024-10-09T20:58:29Z","date_created":"2018-12-11T11:46:50Z","acknowledgement":"We thank R Chait and M Lagator for sharing Bacillus subtilis CR_Y1 and pZS*_2R-cIPtet-Venus-Prm, respectively. We are grateful to T Pilizota and all members of the Guet lab for critically reading the manuscript. We also thank the Bioimaging facility at IST Austria for assistance using the FACSAria III system.\r\n\r\n","department":[{"_id":"CaGu"}]},{"corr_author":"1","abstract":[{"lang":"eng","text":"This study treats with the influence of a symmetry-breaking transversal magnetic field on the nonlinear dynamics of ferrofluidic Taylor-Couette flow – flow confined between two concentric independently rotating cylinders. We detected alternating ‘flip’ solutions which are flow states featuring typical characteristics of slow-fast-dynamics in dynamical systems. The flip corresponds to a temporal change in the axial wavenumber and we find them to appear either as pure 2-fold axisymmetric (due to the symmetry-breaking nature of the applied transversal magnetic field) or involving non-axisymmetric, helical modes in its interim solution. The latter ones show features of typical ribbon solutions. In any case the flip solutions have a preferential first axial wavenumber which corresponds to the more stable state (slow dynamics) and second axial wavenumber, corresponding to the short appearing more unstable state (fast dynamics). However, in both cases the flip time grows exponential with increasing the magnetic field strength before the flip solutions, living on 2-tori invariant manifolds, cease to exist, with lifetime going to infinity. Further we show that ferrofluidic flow turbulence differ from the classical, ordinary (usually at high Reynolds number) turbulence. The applied magnetic field hinders the free motion of ferrofluid partials and therefore smoothen typical turbulent quantities and features so that speaking of mildly chaotic dynamics seems to be a more appropriate expression for the observed motion. "}],"author":[{"full_name":"Altmeyer, Sebastian","first_name":"Sebastian","id":"2EE67FDC-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5964-0203","last_name":"Altmeyer"}],"file_date_updated":"2020-07-14T12:46:37Z","oa":1,"publisher":"Elsevier","publication":"Journal of Magnetism and Magnetic Materials","volume":452,"year":"2018","intvolume":"       452","ddc":["530"],"status":"public","quality_controlled":"1","scopus_import":"1","date_created":"2018-12-11T11:46:56Z","acknowledgement":"S.Altmeyer is a Serra Húnter Fellow","department":[{"_id":"BjHo"}],"date_updated":"2024-10-09T20:58:32Z","file":[{"file_id":"7838","file_size":17309535,"content_type":"application/pdf","relation":"main_file","date_created":"2020-05-14T14:41:17Z","file_name":"2018_Magnetism_Altmeyer.pdf","checksum":"431f5cd4a628d7ca21161f82b14ccb4f","date_updated":"2020-07-14T12:46:37Z","access_level":"open_access","creator":"dernst"}],"month":"04","date_published":"2018-04-15T00:00:00Z","has_accepted_license":"1","publist_id":"7297","type":"journal_article","isi":1,"page":"427 - 441","article_type":"original","doi":"10.1016/j.jmmm.2017.12.073","fulldoi":"https://doi.org/10.1016/j.jmmm.2017.12.073","language":[{"iso":"eng"}],"oa_version":"Submitted Version","day":"15","_id":"519","article_processing_charge":"No","citation":{"chicago":"Altmeyer, Sebastian. “Non-Linear Dynamics and Alternating ‘Flip’ Solutions in Ferrofluidic Taylor-Couette Flow.” <i>Journal of Magnetism and Magnetic Materials</i>. Elsevier, 2018. <a href=\"https://doi.org/10.1016/j.jmmm.2017.12.073\">https://doi.org/10.1016/j.jmmm.2017.12.073</a>.","ista":"Altmeyer S. 2018. Non-linear dynamics and alternating ‘flip’ solutions in ferrofluidic Taylor-Couette flow. Journal of Magnetism and Magnetic Materials. 452, 427–441.","ama":"Altmeyer S. Non-linear dynamics and alternating ‘flip’ solutions in ferrofluidic Taylor-Couette flow. <i>Journal of Magnetism and Magnetic Materials</i>. 2018;452:427-441. doi:<a href=\"https://doi.org/10.1016/j.jmmm.2017.12.073\">10.1016/j.jmmm.2017.12.073</a>","short":"S. Altmeyer, Journal of Magnetism and Magnetic Materials 452 (2018) 427–441.","ieee":"S. Altmeyer, “Non-linear dynamics and alternating ‘flip’ solutions in ferrofluidic Taylor-Couette flow,” <i>Journal of Magnetism and Magnetic Materials</i>, vol. 452. Elsevier, pp. 427–441, 2018.","mla":"Altmeyer, Sebastian. “Non-Linear Dynamics and Alternating ‘Flip’ Solutions in Ferrofluidic Taylor-Couette Flow.” <i>Journal of Magnetism and Magnetic Materials</i>, vol. 452, Elsevier, 2018, pp. 427–41, doi:<a href=\"https://doi.org/10.1016/j.jmmm.2017.12.073\">10.1016/j.jmmm.2017.12.073</a>.","apa":"Altmeyer, S. (2018). Non-linear dynamics and alternating ‘flip’ solutions in ferrofluidic Taylor-Couette flow. <i>Journal of Magnetism and Magnetic Materials</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.jmmm.2017.12.073\">https://doi.org/10.1016/j.jmmm.2017.12.073</a>"},"publication_status":"published","external_id":{"isi":["000425547700061"]},"title":"Non-linear dynamics and alternating ‘flip’ solutions in ferrofluidic Taylor-Couette flow","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1"}]