[{"month":"04","article_processing_charge":"No","title":"Can quasars, triggered by mergers, account for NANOGrav’s stochastic gravitational wave background?","issue":"7","_id":"19497","year":"2025","oa_version":"Preprint","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","isi":1,"oa":1,"publication_status":"published","article_type":"original","author":[{"full_name":"Kis-Tóth, Ágnes","first_name":"Ágnes","last_name":"Kis-Tóth"},{"id":"7c006e8c-cc0d-11ee-8322-cb904ef76f36","full_name":"Haiman, Zoltán","first_name":"Zoltán","orcid":"0000-0003-3633-5403","last_name":"Haiman"},{"full_name":"Frei, Zsolt","first_name":"Zsolt","last_name":"Frei"}],"OA_type":"green","arxiv":1,"acknowledgement":"We thank Chengcheng Xin and Girish Kulkarni for useful discussions. ZH gratefully acknowledges the hospitality of Eötvös University during an extended sabbatical visit, where this work began. ZH acknowledges support from NSF Grant AST-2006176 and NASA Grants 80NSSC22K0822 and 80NSSC24K0440. ZF acknowledges support from the Hungarian National Research, Development and Innovation Office (NKFIH) through the Institutional Excellence Program No. TKP2021-NKTA-64.","date_published":"2025-04-04T00:00:00Z","scopus_import":"1","abstract":[{"text":"The stochastic gravitational wave (GW) background recently discovered by several pulsar timing array experiments is consistent with arising from a population of coalescing super-massive black hole binaries. The amplitude of the background is somewhat higher than expected in most previous population models or from the local mass density observations. Such binaries are expected to be produced in galaxy mergers, which are also thought to trigger bright quasar activity. Under the assumptions that (i) a fraction fbin∼1 of all quasars are associated with mergers, (ii) the typical quasar lifetime is tQ∼108 yr, and (iii) adopting Eddington ratios fEdd∼0.25 for the luminosity of quasars, we compute the GW background associated directly with the empirically measured quasar luminosity function. This approach bypasses the need to model the cosmological evolution of black holes or galaxy mergers from simulations or semi-analytical models. We find the amplitude matching the value measured by NANOGrav. Our results are consistent with most quasars being associated with black hole binaries and being the sources of the GW background, and imply a joint constraint on tQ, fEdd and the typical mass ratio q≡M2/M1. The signal in this case would be dominated by relatively distant ∼109M⊙ sources at z≈2−3, at the peak of quasar activity. Similarly to other models, our results remain in tension with the local super-massive black hole mass density.","lang":"eng"}],"status":"public","main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2412.12726","open_access":"1"}],"publication":"Classical and Quantum Gravity","publisher":"IOP Publishing","day":"04","doi":"10.1088/1361-6382/adbda6","type":"journal_article","citation":{"chicago":"Kis-Tóth, Ágnes, Zoltán Haiman, and Zsolt Frei. “Can Quasars, Triggered by Mergers, Account for NANOGrav’s Stochastic Gravitational Wave Background?” <i>Classical and Quantum Gravity</i>. IOP Publishing, 2025. <a href=\"https://doi.org/10.1088/1361-6382/adbda6\">https://doi.org/10.1088/1361-6382/adbda6</a>.","ama":"Kis-Tóth Á, Haiman Z, Frei Z. Can quasars, triggered by mergers, account for NANOGrav’s stochastic gravitational wave background? <i>Classical and Quantum Gravity</i>. 2025;42(7). doi:<a href=\"https://doi.org/10.1088/1361-6382/adbda6\">10.1088/1361-6382/adbda6</a>","ista":"Kis-Tóth Á, Haiman Z, Frei Z. 2025. Can quasars, triggered by mergers, account for NANOGrav’s stochastic gravitational wave background? Classical and Quantum Gravity. 42(7), 075007.","mla":"Kis-Tóth, Ágnes, et al. “Can Quasars, Triggered by Mergers, Account for NANOGrav’s Stochastic Gravitational Wave Background?” <i>Classical and Quantum Gravity</i>, vol. 42, no. 7, 075007, IOP Publishing, 2025, doi:<a href=\"https://doi.org/10.1088/1361-6382/adbda6\">10.1088/1361-6382/adbda6</a>.","apa":"Kis-Tóth, Á., Haiman, Z., &#38; Frei, Z. (2025). Can quasars, triggered by mergers, account for NANOGrav’s stochastic gravitational wave background? <i>Classical and Quantum Gravity</i>. IOP Publishing. <a href=\"https://doi.org/10.1088/1361-6382/adbda6\">https://doi.org/10.1088/1361-6382/adbda6</a>","ieee":"Á. Kis-Tóth, Z. Haiman, and Z. Frei, “Can quasars, triggered by mergers, account for NANOGrav’s stochastic gravitational wave background?,” <i>Classical and Quantum Gravity</i>, vol. 42, no. 7. IOP Publishing, 2025.","short":"Á. Kis-Tóth, Z. Haiman, Z. Frei, Classical and Quantum Gravity 42 (2025)."},"volume":42,"date_created":"2025-04-06T22:01:32Z","department":[{"_id":"ZoHa"}],"article_number":"075007","OA_place":"repository","date_updated":"2025-09-30T11:30:11Z","external_id":{"arxiv":["2412.12726"],"isi":["001448904700001"]},"language":[{"iso":"eng"}],"quality_controlled":"1","intvolume":"        42","publication_identifier":{"eissn":["1361-6382"],"issn":["0264-9381"]}},{"publication":"Documenta Mathematica","DOAJ_listed":"1","citation":{"chicago":"Erdös, László, and Hong Chang Ji. “Density of Brown Measure of Free Circular Brownian Motion.” <i>Documenta Mathematica</i>. EMS Press, 2025. <a href=\"https://doi.org/10.4171/DM/999\">https://doi.org/10.4171/DM/999</a>.","ama":"Erdös L, Ji HC. Density of Brown measure of free circular Brownian motion. <i>Documenta Mathematica</i>. 2025;30(2):417-453. doi:<a href=\"https://doi.org/10.4171/DM/999\">10.4171/DM/999</a>","ieee":"L. Erdös and H. C. Ji, “Density of Brown measure of free circular Brownian motion,” <i>Documenta Mathematica</i>, vol. 30, no. 2. EMS Press, pp. 417–453, 2025.","ista":"Erdös L, Ji HC. 2025. Density of Brown measure of free circular Brownian motion. Documenta Mathematica. 30(2), 417–453.","apa":"Erdös, L., &#38; Ji, H. C. (2025). Density of Brown measure of free circular Brownian motion. <i>Documenta Mathematica</i>. EMS Press. <a href=\"https://doi.org/10.4171/DM/999\">https://doi.org/10.4171/DM/999</a>","mla":"Erdös, László, and Hong Chang Ji. “Density of Brown Measure of Free Circular Brownian Motion.” <i>Documenta Mathematica</i>, vol. 30, no. 2, EMS Press, 2025, pp. 417–53, doi:<a href=\"https://doi.org/10.4171/DM/999\">10.4171/DM/999</a>.","short":"L. Erdös, H.C. Ji, Documenta Mathematica 30 (2025) 417–453."},"volume":30,"page":"417-453","day":"20","doi":"10.4171/DM/999","publisher":"EMS Press","ec_funded":1,"type":"journal_article","date_created":"2025-04-06T22:01:32Z","file_date_updated":"2025-04-07T11:21:13Z","department":[{"_id":"LaEr"}],"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"intvolume":"        30","quality_controlled":"1","language":[{"iso":"eng"}],"publication_identifier":{"eissn":["1431-0643"],"issn":["1431-0635"]},"date_updated":"2025-09-30T11:28:02Z","has_accepted_license":"1","OA_place":"publisher","external_id":{"arxiv":["2307.08626"],"isi":["001450119900005"]},"corr_author":"1","article_processing_charge":"Yes","month":"03","year":"2025","issue":"2","_id":"19500","oa_version":"Published Version","title":"Density of Brown measure of free circular Brownian motion","project":[{"call_identifier":"H2020","name":"Random matrices beyond Wigner-Dyson-Mehta","_id":"62796744-2b32-11ec-9570-940b20777f1d","grant_number":"101020331"}],"publication_status":"published","article_type":"original","author":[{"last_name":"Erdös","orcid":"0000-0001-5366-9603","full_name":"Erdös, László","id":"4DBD5372-F248-11E8-B48F-1D18A9856A87","first_name":"László"},{"first_name":"Hong Chang","full_name":"Ji, Hong Chang","last_name":"Ji"}],"file":[{"content_type":"application/pdf","access_level":"open_access","creator":"dernst","date_created":"2025-04-07T11:21:13Z","file_id":"19523","file_size":1366865,"relation":"main_file","success":1,"checksum":"97a02d18c05f2b9f2048747b140e7d43","date_updated":"2025-04-07T11:21:13Z","file_name":"2025_DocumentaMathematica_Erdoes.pdf"}],"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","isi":1,"oa":1,"date_published":"2025-03-20T00:00:00Z","abstract":[{"text":"We consider the Brown measure of the free circular Brownian motion,  a+t√x , with an arbitrary initial condition  a , i.e.  a  is a general non-normal operator and  x  is a circular element  ∗ -free from  a . We prove that, under a mild assumption on  a , the density of the Brown measure has one of the following two types of behavior around each point on the boundary of its support -- either (i) sharp cut, i.e. a jump discontinuity along the boundary, or (ii) quadratic decay at certain critical points on the boundary. Our result is in direct analogy with the previously known phenomenon for the spectral density of free semicircular Brownian motion, whose singularities are either a square-root edge or a cubic cusp. We also provide several examples and counterexamples, one of which shows that our assumption on  a  is necessary.","lang":"eng"}],"scopus_import":"1","status":"public","OA_type":"gold","acknowledgement":"We thank Ping Zhong for pointing out references [15,19] and providing helpful comments. We also thank the anonymous referee for many valuable comments and proposals to streamline the presentation. This work was partially supported by ERC Advanced Grant “RMTBeyond” No. 10102033.","ddc":["510"],"arxiv":1},{"acknowledgement":"H.S. acknowledges support from the Villum Foundation through a Villum Investigator Grant No. 25886. We thank Jan Thøgersen for expert help with the optics and the laser system.","arxiv":1,"OA_type":"green","status":"public","date_published":"2025-03-21T00:00:00Z","scopus_import":"1","abstract":[{"text":"Alkali dimers, Ak2, located on the surface of a helium nanodroplet, are set into rotation through the polarizability interaction with a nonresonant 1-ps-long laser pulse. The time-dependent degree of alignment is recorded using femtosecond-probe-pulse-induced Coulomb explosion into a pair of Ak+ fragment ions. The results, obtained for Na2, K2, and Rb2 in both the ground state 11Σ+g and the lowest-lying triplet state 13Σ+u, exhibit distinct, periodic revivals with a gradually decreasing amplitude. The dynamics differ from that expected for dimers had they behaved as free rotors. Numerically, we solve the time-dependent rotational Schrödinger equation, including an effective mean-field potential to describe the interaction between the dimer and the droplet. The experimental and simulated alignment dynamics agree well and their comparison enables us to determine the effective rotational constants of the alkali dimers with the exception of Rb2(13Σ+u) that only exhibits a prompt alignment peak but no subsequent revivals. For Na2(13Σ+u), K2(11Σ+g), K2(13Σ+u) and Rb2(11Σ+g), the alignment dynamics are well-described by a 2D rotor model. We ascribe this to a significant confinement of the internuclear axis of these dimers, induced by the orientation-dependent droplet-dimer interaction, to the tangential plane of their residence point on the droplet.","lang":"eng"}],"oa":1,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","isi":1,"author":[{"last_name":"Kristensen","full_name":"Kristensen, Henrik H.","first_name":"Henrik H."},{"last_name":"Kranabetter","full_name":"Kranabetter, Lorenz","first_name":"Lorenz"},{"last_name":"Ghazaryan","orcid":"0000-0001-9666-3543","full_name":"Ghazaryan, Areg","id":"4AF46FD6-F248-11E8-B48F-1D18A9856A87","first_name":"Areg"},{"last_name":"Schouder","first_name":"Constant A.","full_name":"Schouder, Constant A."},{"last_name":"Hansen","full_name":"Hansen, Emil","first_name":"Emil"},{"full_name":"Jensen, Frank","first_name":"Frank","last_name":"Jensen"},{"full_name":"Zillich, Robert E.","first_name":"Robert E.","last_name":"Zillich"},{"orcid":"0000-0002-6990-7802","last_name":"Lemeshko","id":"37CB05FA-F248-11E8-B48F-1D18A9856A87","full_name":"Lemeshko, Mikhail","first_name":"Mikhail"},{"last_name":"Stapelfeldt","full_name":"Stapelfeldt, Henrik","first_name":"Henrik"}],"article_type":"original","publication_status":"published","title":"Nonadiabatic laser-induced alignment dynamics of alkali-metal dimers on the surface of a helium droplet","oa_version":"Preprint","year":"2025","_id":"19502","issue":"3","month":"03","article_processing_charge":"No","external_id":{"arxiv":["2502.14521"],"isi":["001459727400007"]},"date_updated":"2025-09-30T11:27:25Z","OA_place":"repository","publication_identifier":{"eissn":["2469-9934"],"issn":["2469-9926"]},"intvolume":"       111","quality_controlled":"1","language":[{"iso":"eng"}],"article_number":"033114","department":[{"_id":"MiLe"}],"date_created":"2025-04-06T22:01:32Z","type":"journal_article","publisher":"American Physical Society","doi":"10.1103/PhysRevA.111.033114","day":"21","volume":111,"citation":{"ama":"Kristensen HH, Kranabetter L, Ghazaryan A, et al. Nonadiabatic laser-induced alignment dynamics of alkali-metal dimers on the surface of a helium droplet. <i>Physical Review A</i>. 2025;111(3). doi:<a href=\"https://doi.org/10.1103/PhysRevA.111.033114\">10.1103/PhysRevA.111.033114</a>","chicago":"Kristensen, Henrik H., Lorenz Kranabetter, Areg Ghazaryan, Constant A. Schouder, Emil Hansen, Frank Jensen, Robert E. Zillich, Mikhail Lemeshko, and Henrik Stapelfeldt. “Nonadiabatic Laser-Induced Alignment Dynamics of Alkali-Metal Dimers on the Surface of a Helium Droplet.” <i>Physical Review A</i>. American Physical Society, 2025. <a href=\"https://doi.org/10.1103/PhysRevA.111.033114\">https://doi.org/10.1103/PhysRevA.111.033114</a>.","short":"H.H. Kristensen, L. Kranabetter, A. Ghazaryan, C.A. Schouder, E. Hansen, F. Jensen, R.E. Zillich, M. Lemeshko, H. Stapelfeldt, Physical Review A 111 (2025).","ieee":"H. H. Kristensen <i>et al.</i>, “Nonadiabatic laser-induced alignment dynamics of alkali-metal dimers on the surface of a helium droplet,” <i>Physical Review A</i>, vol. 111, no. 3. American Physical Society, 2025.","apa":"Kristensen, H. H., Kranabetter, L., Ghazaryan, A., Schouder, C. A., Hansen, E., Jensen, F., … Stapelfeldt, H. (2025). Nonadiabatic laser-induced alignment dynamics of alkali-metal dimers on the surface of a helium droplet. <i>Physical Review A</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevA.111.033114\">https://doi.org/10.1103/PhysRevA.111.033114</a>","ista":"Kristensen HH, Kranabetter L, Ghazaryan A, Schouder CA, Hansen E, Jensen F, Zillich RE, Lemeshko M, Stapelfeldt H. 2025. Nonadiabatic laser-induced alignment dynamics of alkali-metal dimers on the surface of a helium droplet. Physical Review A. 111(3), 033114.","mla":"Kristensen, Henrik H., et al. “Nonadiabatic Laser-Induced Alignment Dynamics of Alkali-Metal Dimers on the Surface of a Helium Droplet.” <i>Physical Review A</i>, vol. 111, no. 3, 033114, American Physical Society, 2025, doi:<a href=\"https://doi.org/10.1103/PhysRevA.111.033114\">10.1103/PhysRevA.111.033114</a>."},"main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2502.14521","open_access":"1"}],"publication":"Physical Review A"},{"type":"journal_article","ec_funded":1,"page":"559-564","day":"01","doi":"10.1017/S0963548325000045","publisher":"Cambridge University Press","volume":34,"citation":{"chicago":"Christoph, Micha, Kalina H Petrova, and Raphael Steiner. “A Note on Digraph Splitting.” <i>Combinatorics Probability and Computing</i>. Cambridge University Press, 2025. <a href=\"https://doi.org/10.1017/S0963548325000045\">https://doi.org/10.1017/S0963548325000045</a>.","ama":"Christoph M, Petrova KH, Steiner R. A note on digraph splitting. <i>Combinatorics Probability and Computing</i>. 2025;34(4):559-564. doi:<a href=\"https://doi.org/10.1017/S0963548325000045\">10.1017/S0963548325000045</a>","ieee":"M. Christoph, K. H. Petrova, and R. Steiner, “A note on digraph splitting,” <i>Combinatorics Probability and Computing</i>, vol. 34, no. 4. Cambridge University Press, pp. 559–564, 2025.","apa":"Christoph, M., Petrova, K. H., &#38; Steiner, R. (2025). A note on digraph splitting. <i>Combinatorics Probability and Computing</i>. Cambridge University Press. <a href=\"https://doi.org/10.1017/S0963548325000045\">https://doi.org/10.1017/S0963548325000045</a>","mla":"Christoph, Micha, et al. “A Note on Digraph Splitting.” <i>Combinatorics Probability and Computing</i>, vol. 34, no. 4, Cambridge University Press, 2025, pp. 559–64, doi:<a href=\"https://doi.org/10.1017/S0963548325000045\">10.1017/S0963548325000045</a>.","ista":"Christoph M, Petrova KH, Steiner R. 2025. A note on digraph splitting. Combinatorics Probability and Computing. 34(4), 559–564.","short":"M. Christoph, K.H. Petrova, R. Steiner, Combinatorics Probability and Computing 34 (2025) 559–564."},"publication":"Combinatorics Probability and Computing","external_id":{"arxiv":["2310.08449"],"isi":["001449245700001"]},"date_updated":"2025-09-30T11:26:00Z","has_accepted_license":"1","OA_place":"publisher","publication_identifier":{"eissn":["1469-2163"],"issn":["0963-5483"]},"intvolume":"        34","quality_controlled":"1","language":[{"iso":"eng"}],"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"department":[{"_id":"MaKw"}],"date_created":"2025-04-06T22:01:32Z","file_date_updated":"2025-08-05T12:54:06Z","title":"A note on digraph splitting","oa_version":"Published Version","year":"2025","_id":"19503","issue":"4","month":"07","article_processing_charge":"Yes (in subscription journal)","acknowledgement":"Funded by SNSF Ambizione grant No. 216071. This project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No, 101034413. Funded by SNSF grant CRSII5, 173721.","ddc":["510"],"arxiv":1,"OA_type":"hybrid","status":"public","abstract":[{"lang":"eng","text":"A tantalizing open problem, posed independently by Stiebitz in 1995 and by Alon in 1996 and again in 2006, asks whether for every pair of integers  s,t≥1 there exists a finite number  F(s,t)\r\nsuch that the vertex set of every digraph of minimum out-degree at least  F(s,t) can be partitioned into non-empty parts  A  and  B  such that the subdigraphs induced on  A\r\n  and  B  have minimum out-degree at least  s  and  t , respectively.\r\nIn this short note, we prove that if  F(2,2)  exists, then all the numbers  F(s,t)  with  s,t≥1\r\n  exist and satisfy  F(s,t)=Θ(s+t) . In consequence, the problem of Alon and Stiebitz reduces to the case  s=t=2 . Moreover, the numbers  F(s,t)  with  s,t≥2  either all exist and grow linearly, or all of them do not exist."}],"date_published":"2025-07-01T00:00:00Z","scopus_import":"1","oa":1,"file":[{"date_updated":"2025-08-05T12:54:06Z","file_name":"2025_CombProbComputing_Christoph.pdf","checksum":"98491e59b4f0d05d69f608bbd5706f1a","success":1,"relation":"main_file","file_size":188818,"file_id":"20135","access_level":"open_access","date_created":"2025-08-05T12:54:06Z","creator":"dernst","content_type":"application/pdf"}],"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","isi":1,"author":[{"last_name":"Christoph","full_name":"Christoph, Micha","first_name":"Micha"},{"last_name":"Petrova","id":"554ff4e4-f325-11ee-b0c4-a10dbd523381","full_name":"Petrova, Kalina H","first_name":"Kalina H"},{"first_name":"Raphael","full_name":"Steiner, Raphael","last_name":"Steiner"}],"project":[{"call_identifier":"H2020","name":"IST-BRIDGE: International postdoctoral program","grant_number":"101034413","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c"}],"article_type":"original","publication_status":"published"},{"volume":9,"citation":{"ama":"Wang W, Cantalupo S, Pensabene A, et al. A giant disk galaxy two billion years after the Big Bang. <i>Nature Astronomy</i>. 2025;9:710-719. doi:<a href=\"https://doi.org/10.1038/s41550-025-02500-2\">10.1038/s41550-025-02500-2</a>","chicago":"Wang, Weichen, Sebastiano Cantalupo, Antonio Pensabene, Marta Galbiati, Andrea Travascio, Charles C. Steidel, Michael V. Maseda, et al. “A Giant Disk Galaxy Two Billion Years after the Big Bang.” <i>Nature Astronomy</i>. Springer Nature, 2025. <a href=\"https://doi.org/10.1038/s41550-025-02500-2\">https://doi.org/10.1038/s41550-025-02500-2</a>.","short":"W. Wang, S. Cantalupo, A. Pensabene, M. Galbiati, A. Travascio, C.C. Steidel, M.V. Maseda, G. Pezzulli, S. De Beer, M. Fossati, M. Fumagalli, S.G. Gallego, T. Lazeyras, R. Mackenzie, J.J. Matthee, T. Nanayakkara, G. Quadri, Nature Astronomy 9 (2025) 710–719.","ieee":"W. Wang <i>et al.</i>, “A giant disk galaxy two billion years after the Big Bang,” <i>Nature Astronomy</i>, vol. 9. Springer Nature, pp. 710–719, 2025.","mla":"Wang, Weichen, et al. “A Giant Disk Galaxy Two Billion Years after the Big Bang.” <i>Nature Astronomy</i>, vol. 9, Springer Nature, 2025, pp. 710–19, doi:<a href=\"https://doi.org/10.1038/s41550-025-02500-2\">10.1038/s41550-025-02500-2</a>.","ista":"Wang W, Cantalupo S, Pensabene A, Galbiati M, Travascio A, Steidel CC, Maseda MV, Pezzulli G, De Beer S, Fossati M, Fumagalli M, Gallego SG, Lazeyras T, Mackenzie R, Matthee JJ, Nanayakkara T, Quadri G. 2025. A giant disk galaxy two billion years after the Big Bang. Nature Astronomy. 9, 710–719.","apa":"Wang, W., Cantalupo, S., Pensabene, A., Galbiati, M., Travascio, A., Steidel, C. C., … Quadri, G. (2025). A giant disk galaxy two billion years after the Big Bang. <i>Nature Astronomy</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41550-025-02500-2\">https://doi.org/10.1038/s41550-025-02500-2</a>"},"type":"journal_article","page":"710-719","publisher":"Springer Nature","day":"17","doi":"10.1038/s41550-025-02500-2","publication":"Nature Astronomy","publication_identifier":{"eissn":["2397-3366"]},"intvolume":"         9","language":[{"iso":"eng"}],"quality_controlled":"1","external_id":{"pmid":["40417329"],"isi":["001447477100001"],"arxiv":["2409.17956"]},"date_updated":"2025-09-30T11:25:14Z","has_accepted_license":"1","OA_place":"publisher","department":[{"_id":"JoMa"}],"date_created":"2025-04-06T22:01:32Z","file_date_updated":"2025-08-05T12:49:36Z","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","image":"/images/cc_by_nc_nd.png","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","short":"CC BY-NC-ND (4.0)"},"oa_version":"Published Version","year":"2025","_id":"19504","title":"A giant disk galaxy two billion years after the Big Bang","article_processing_charge":"No","month":"03","pmid":1,"status":"public","date_published":"2025-03-17T00:00:00Z","scopus_import":"1","abstract":[{"text":"Observational studies have shown that galaxy disks were already in place in the first few billion years of the Universe. The early disks detected so far, with typical half-light radii of 3 kpc at stellar masses around 1011 M⊙ for redshift z ≈ 3, are significantly smaller than today’s disks with similar masses, which is in agreement with expectations from current galaxy models. Here we report observations of a giant disk at z = 3.25, when the Universe was only two billion years old, with a half-light radius of 9.6 kpc and stellar mass of (math formular). This galaxy is larger than any other kinematically confirmed disks at similar epochs and is surprisingly similar to today’s largest disks with regard to size and mass. James Webb Space Telescope imaging and spectroscopy reveal its spiral morphology and a rotational velocity consistent with a local Tully–Fisher relationship. Multiwavelength observations show that it lies in an exceptionally dense environment, where the galaxy number density is more than ten times higher than the cosmic average and mergers are frequent. The discovery of such a giant disk suggests the presence of favourable physical conditions for large-disk formation in dense environments in the early Universe, which may include efficient accretion of gas carrying coherent angular momentum and non-destructive mergers between exceptionally gas-rich progenitor galaxies.","lang":"eng"}],"acknowledgement":"We thank B. Wang, P. Madau, M. Dotti, A. de la Vega, Y. Guo, C. Bacchini, Z. Cai, C. Conselice, A. Dekel, S. Faber, F. Fraternali, L. Ho, F. Jiang, S. Kassin, D. Koo, N. Mandelker, S. Mao and D. Xu for the valuable and insightful discussions regarding the research topics relevant to this paper. This project was supported by the European Research Council (ERC) Consolidator Grant no. 864361 (CosmicWeb). A.P. acknowledges the support from Fondazione Cariplo grant no. 2020-0902. M.V.M. acknowledges funding from NASA by means of HST-GO-17065. T.N. acknowledges support from Australian Research Council Laureate Fellowship FL180100060. This work is based in part on observations made with the NASA/ESA/CSA James Webb Space Telescope. The data were obtained from the Mikulski Archive for Space Telescopes at the Space Telescope Science Institute, which is operated by the Association of Universities for Research in Astronomy, Inc., under NASA contract NAS 5-03127 for JWST. These observations are associated with programme no. 1835. Support for programme no. 1835 was provided by NASA through a grant from the Space Telescope Science Institute, which is operated by the Association of Universities for Research in Astronomy, Inc., under NASA contract NAS 5-03127. This research is based on observations made with the NASA/ESA Hubble Space Telescope obtained from the Space Telescope Science Institute, which is operated by the Association of Universities for Research in Astronomy, Inc., under NASA contract NAS 5-26555. These observations are associated with programme 17065. ALMA is a partnership of ESO (representing its member states), NSF (USA) and NINS (Japan), together with NRC (Canada), MOST and ASIAA (Taiwan), and KASI (Republic of Korea), in cooperation with the Republic of Chile. The Joint ALMA Observatory is operated by ESO, AUI/NRAO and NAOJ. The scientific results reported in this article are based in part on observations made by the Chandra X-ray Observatory. This work is also based on observations collected at the European Southern Observatory under ESO programme 110.23ZX.","ddc":["520"],"arxiv":1,"OA_type":"hybrid","author":[{"full_name":"Wang, Weichen","first_name":"Weichen","last_name":"Wang"},{"last_name":"Cantalupo","full_name":"Cantalupo, Sebastiano","first_name":"Sebastiano"},{"full_name":"Pensabene, Antonio","first_name":"Antonio","last_name":"Pensabene"},{"first_name":"Marta","full_name":"Galbiati, Marta","last_name":"Galbiati"},{"last_name":"Travascio","first_name":"Andrea","full_name":"Travascio, Andrea"},{"last_name":"Steidel","first_name":"Charles C.","full_name":"Steidel, Charles C."},{"last_name":"Maseda","first_name":"Michael V.","full_name":"Maseda, Michael V."},{"last_name":"Pezzulli","first_name":"Gabriele","full_name":"Pezzulli, Gabriele"},{"full_name":"De Beer, Stephanie","first_name":"Stephanie","last_name":"De Beer"},{"full_name":"Fossati, Matteo","first_name":"Matteo","last_name":"Fossati"},{"first_name":"Michele","full_name":"Fumagalli, Michele","last_name":"Fumagalli"},{"last_name":"Gallego","first_name":"Sofia G.","full_name":"Gallego, Sofia G."},{"full_name":"Lazeyras, Titouan","first_name":"Titouan","last_name":"Lazeyras"},{"first_name":"Ruari","full_name":"Mackenzie, Ruari","last_name":"Mackenzie"},{"orcid":"0000-0003-2871-127X","last_name":"Matthee","first_name":"Jorryt J","full_name":"Matthee, Jorryt J","id":"7439a258-f3c0-11ec-9501-9df22fe06720"},{"first_name":"Themiya","full_name":"Nanayakkara, Themiya","last_name":"Nanayakkara"},{"last_name":"Quadri","first_name":"Giada","full_name":"Quadri, Giada"}],"publication_status":"published","article_type":"original","oa":1,"file":[{"file_name":"2025_NatureAstronomy_Wang.pdf","date_updated":"2025-08-05T12:49:36Z","checksum":"a0e65fe3374bd755b18ba03fd5e42a3f","success":1,"relation":"main_file","file_size":4912850,"file_id":"20134","date_created":"2025-08-05T12:49:36Z","creator":"dernst","access_level":"open_access","content_type":"application/pdf"}],"isi":1,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345"},{"oa":1,"isi":1,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","author":[{"id":"673cd0cc-9b9a-11eb-b144-88f30e1fbb72","full_name":"Agresti, Antonio","first_name":"Antonio","orcid":"0000-0002-9573-2962","last_name":"Agresti"},{"last_name":"Hieber","full_name":"Hieber, Matthias","first_name":"Matthias"},{"last_name":"Hussein","full_name":"Hussein, Amru","first_name":"Amru"},{"last_name":"Saal","full_name":"Saal, Martin","first_name":"Martin"}],"article_type":"original","publication_status":"published","project":[{"_id":"0aa76401-070f-11eb-9043-b5bb049fa26d","grant_number":"948819","call_identifier":"H2020","name":"Bridging Scales in Random Materials"}],"arxiv":1,"acknowledgement":"The first author thanks Umberto Pappalettera for helpful suggestions on Section 2 and for bringing to his attention the reference [56]. The first author is grateful to Marco Romito for helpful comments related to Remarks 2.1 and 2.2. Finally, the first author thanks Caterina Balzotti for her support in creating the picture.\r\nAntonio Agresti has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (grant agreement No 948819). Antonio Agresti is a member of GNAMPA (INδAM).\r\nMatthias Hieber gratefully acknowledges the support by the Deutsche Forschungsgemeinschaft (DFG) through the Research Unit 5528—project number 500072446.\r\nAmru Hussein has been supported by Deutsche Forschungsgemeinschaft (DFG)—project\r\nnumber 508634462 and by MathApp—Mathematics Applied to Real-World Problems—part\r\nof the Research Initiative of the Federal State of Rhineland-Palatinate, Germany.\r\nMartin Saal has been supported by Deutsche Forschungsgemeinschaft (DFG)—project\r\nnumber 429483464.","OA_type":"green","status":"public","abstract":[{"lang":"eng","text":"In this paper, we introduce and study the primitive equations with non-isothermal turbulent pressure and transport noise. They are derived from the Navier–Stokes equations by employing stochastic versions of the Boussinesq and the hydrostatic approximations. The temperature dependence of the turbulent pressure can be seen as a consequence of an additive noise acting on the small vertical dynamics. For such a model we prove global well-posedness in H^1 where the noise is considered in both the Itô and Stratonovich formulations. Compared to previous variants of the primitive equations, the one considered here presents a more intricate coupling between the velocity field and the temperature. The corresponding analysis is seriously more involved than in the deterministic setting. Finally, the continuous dependence on the initial data and the energy estimates proven here are new, even in the case of isothermal turbulent pressure."}],"date_published":"2025-02-01T00:00:00Z","scopus_import":"1","month":"02","article_processing_charge":"No","title":"The stochastic primitive equations with nonisothermal turbulent pressure","oa_version":"Preprint","_id":"19505","issue":"1","year":"2025","department":[{"_id":"JuFi"}],"date_created":"2025-04-06T22:01:32Z","external_id":{"arxiv":["2210.05973"],"isi":["001434322900016"]},"OA_place":"repository","date_updated":"2025-09-30T11:23:58Z","publication_identifier":{"issn":["1050-5164"]},"language":[{"iso":"eng"}],"quality_controlled":"1","intvolume":"        35","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2210.05973"}],"publication":"Annals of Applied Probability","ec_funded":1,"type":"journal_article","day":"01","publisher":"Institute of Mathematical Statistics","doi":"10.1214/24-AAP2124","page":"635-700","volume":35,"citation":{"ieee":"A. Agresti, M. Hieber, A. Hussein, and M. Saal, “The stochastic primitive equations with nonisothermal turbulent pressure,” <i>Annals of Applied Probability</i>, vol. 35, no. 1. Institute of Mathematical Statistics, pp. 635–700, 2025.","apa":"Agresti, A., Hieber, M., Hussein, A., &#38; Saal, M. (2025). The stochastic primitive equations with nonisothermal turbulent pressure. <i>Annals of Applied Probability</i>. Institute of Mathematical Statistics. <a href=\"https://doi.org/10.1214/24-AAP2124\">https://doi.org/10.1214/24-AAP2124</a>","ista":"Agresti A, Hieber M, Hussein A, Saal M. 2025. The stochastic primitive equations with nonisothermal turbulent pressure. Annals of Applied Probability. 35(1), 635–700.","mla":"Agresti, Antonio, et al. “The Stochastic Primitive Equations with Nonisothermal Turbulent Pressure.” <i>Annals of Applied Probability</i>, vol. 35, no. 1, Institute of Mathematical Statistics, 2025, pp. 635–700, doi:<a href=\"https://doi.org/10.1214/24-AAP2124\">10.1214/24-AAP2124</a>.","short":"A. Agresti, M. Hieber, A. Hussein, M. Saal, Annals of Applied Probability 35 (2025) 635–700.","chicago":"Agresti, Antonio, Matthias Hieber, Amru Hussein, and Martin Saal. “The Stochastic Primitive Equations with Nonisothermal Turbulent Pressure.” <i>Annals of Applied Probability</i>. Institute of Mathematical Statistics, 2025. <a href=\"https://doi.org/10.1214/24-AAP2124\">https://doi.org/10.1214/24-AAP2124</a>.","ama":"Agresti A, Hieber M, Hussein A, Saal M. The stochastic primitive equations with nonisothermal turbulent pressure. <i>Annals of Applied Probability</i>. 2025;35(1):635-700. doi:<a href=\"https://doi.org/10.1214/24-AAP2124\">10.1214/24-AAP2124</a>"}},{"publication_identifier":{"issn":["0022-202X"],"eissn":["1523-1747"]},"intvolume":"       145","quality_controlled":"1","language":[{"iso":"eng"}],"external_id":{"pmid":["40010488"],"isi":["001604396400001"]},"corr_author":"1","date_updated":"2025-12-29T14:13:43Z","OA_place":"publisher","has_accepted_license":"1","department":[{"_id":"EdHa"}],"date_created":"2025-04-06T22:01:32Z","file_date_updated":"2025-12-29T14:13:01Z","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","image":"/images/cc_by_nc_nd.png","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","short":"CC BY-NC-ND (4.0)"},"volume":145,"citation":{"short":"M.S. Andersen, S. Ulyanchenko, P.J. Schweiger, E.B. Hannezo, B.D. Simons, K.B. Jensen, Journal of Investigative Dermatology 145 (2025) 2191–2202.e5.","ista":"Andersen MS, Ulyanchenko S, Schweiger PJ, Hannezo EB, Simons BD, Jensen KB. 2025. Spatiotemporal switches in progenitor cell fate govern upper hair follicle growth and maintenance. Journal of Investigative Dermatology. 145(9), 2191–2202.e5.","apa":"Andersen, M. S., Ulyanchenko, S., Schweiger, P. J., Hannezo, E. B., Simons, B. D., &#38; Jensen, K. B. (2025). Spatiotemporal switches in progenitor cell fate govern upper hair follicle growth and maintenance. <i>Journal of Investigative Dermatology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.jid.2025.01.034\">https://doi.org/10.1016/j.jid.2025.01.034</a>","mla":"Andersen, Marianne S., et al. “Spatiotemporal Switches in Progenitor Cell Fate Govern Upper Hair Follicle Growth and Maintenance.” <i>Journal of Investigative Dermatology</i>, vol. 145, no. 9, Elsevier, 2025, p. 2191–2202.e5, doi:<a href=\"https://doi.org/10.1016/j.jid.2025.01.034\">10.1016/j.jid.2025.01.034</a>.","ieee":"M. S. Andersen, S. Ulyanchenko, P. J. Schweiger, E. B. Hannezo, B. D. Simons, and K. B. Jensen, “Spatiotemporal switches in progenitor cell fate govern upper hair follicle growth and maintenance,” <i>Journal of Investigative Dermatology</i>, vol. 145, no. 9. Elsevier, p. 2191–2202.e5, 2025.","ama":"Andersen MS, Ulyanchenko S, Schweiger PJ, Hannezo EB, Simons BD, Jensen KB. Spatiotemporal switches in progenitor cell fate govern upper hair follicle growth and maintenance. <i>Journal of Investigative Dermatology</i>. 2025;145(9):2191-2202.e5. doi:<a href=\"https://doi.org/10.1016/j.jid.2025.01.034\">10.1016/j.jid.2025.01.034</a>","chicago":"Andersen, Marianne S., Svetlana Ulyanchenko, Pawel J. Schweiger, Edouard B Hannezo, Benjamin D. Simons, and Kim B. Jensen. “Spatiotemporal Switches in Progenitor Cell Fate Govern Upper Hair Follicle Growth and Maintenance.” <i>Journal of Investigative Dermatology</i>. Elsevier, 2025. <a href=\"https://doi.org/10.1016/j.jid.2025.01.034\">https://doi.org/10.1016/j.jid.2025.01.034</a>."},"type":"journal_article","page":"2191-2202.e5","day":"01","doi":"10.1016/j.jid.2025.01.034","publisher":"Elsevier","publication":"Journal of Investigative Dermatology","status":"public","scopus_import":"1","date_published":"2025-09-01T00:00:00Z","abstract":[{"text":"The epidermis provides a protective barrier against hostile environments. However, our knowledge of how this barrier forms during development and is subsequently maintained remains incomplete. The infundibulum is a cylindrical epidermal tissue compartment that serves as an outlet for hair follicles protruding from the skin and the excretion of the sebaceous glands that are essential for proper skin function. In this study, we applied quantitative fate mapping to address how infundibulum are maintained during adulthood. We demonstrate that progenitors build and maintain tissues through stochastic cell fate choices. Long-term analysis identified a preferential transient contribution from cells initially located at the bottom of the structure to the maintenance of the tissue, with bursts of local progenitor expansion associated with the phases of hair growth. Beyond providing compartment-wide insights into progenitor cell dynamics in infundibulum, these findings demonstrate how spatiotemporal regulation controls transient progenitor dominance.","lang":"eng"}],"acknowledgement":"We thank the members of the Jensen Laboratory for experimental and technical advice, the imaging facilities at reNEW, and animal caretakers for expert assistance. This work was supported by the Lundbeck Foundation (R105-A9755 to KBJ) and the Leo Pharma Foundation (LF-OC-20-000169). The Novo Nordisk Foundation Center for Stem Cell Medicine was supported by a Novo Nordisk Foundation grant (NNF21CC0073729). B.D.S. was supported by the Wellcome Trust (219478/Z/19/Z) and a Royal Society EP Abraham Research Professorship (RP/R1/180165 and RP\\R\\231004). Figure elements were adapted from Bio-Render. KBJ is the lead contact and guarantor of this study.","ddc":["570"],"OA_type":"hybrid","author":[{"full_name":"Andersen, Marianne S.","first_name":"Marianne S.","last_name":"Andersen"},{"last_name":"Ulyanchenko","first_name":"Svetlana","full_name":"Ulyanchenko, Svetlana"},{"full_name":"Schweiger, Pawel J.","first_name":"Pawel J.","last_name":"Schweiger"},{"orcid":"0000-0001-6005-1561","last_name":"Hannezo","full_name":"Hannezo, Edouard B","id":"3A9DB764-F248-11E8-B48F-1D18A9856A87","first_name":"Edouard B"},{"last_name":"Simons","first_name":"Benjamin D.","full_name":"Simons, Benjamin D."},{"last_name":"Jensen","full_name":"Jensen, Kim B.","first_name":"Kim B."}],"publication_status":"published","article_type":"original","oa":1,"file":[{"file_size":7301679,"relation":"main_file","file_id":"20874","date_created":"2025-12-29T14:13:01Z","creator":"dernst","access_level":"open_access","content_type":"application/pdf","file_name":"2025_JourInvestigativeDerma_Andersen.pdf","date_updated":"2025-12-29T14:13:01Z","checksum":"a2b313de3cacb53f20f2b91c42612ad9","success":1}],"isi":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Published Version","year":"2025","_id":"19507","issue":"9","title":"Spatiotemporal switches in progenitor cell fate govern upper hair follicle growth and maintenance","article_processing_charge":"No","month":"09","pmid":1},{"author":[{"last_name":"Ozleyen","full_name":"Ozleyen, Adem","first_name":"Adem"},{"last_name":"Duran","full_name":"Duran, Gizem Nur","first_name":"Gizem Nur"},{"first_name":"Serhat","id":"7c624079-3200-11ee-973b-9fcc8a575580","full_name":"Dönmez, Serhat","last_name":"Dönmez"},{"last_name":"Ozbil","first_name":"Mehmet","full_name":"Ozbil, Mehmet"},{"last_name":"Doveston","full_name":"Doveston, Richard G.","first_name":"Richard G."},{"first_name":"Tugba Boyunegmez","full_name":"Tumer, Tugba Boyunegmez","last_name":"Tumer"}],"publication_status":"published","article_type":"original","oa":1,"file":[{"date_updated":"2025-04-10T06:21:11Z","file_name":"2025_ScientificReports_Ozleyen.pdf","checksum":"6124a10402a67b66364cfa9350d35b4b","success":1,"file_size":5333058,"relation":"main_file","file_id":"19537","access_level":"open_access","date_created":"2025-04-10T06:21:11Z","creator":"dernst","content_type":"application/pdf"}],"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","isi":1,"status":"public","scopus_import":"1","date_published":"2025-03-14T00:00:00Z","abstract":[{"lang":"eng","text":"NRF2 is a transcription factor responsible for coordinating the expression of over a thousand cytoprotective genes. Although NRF2 is constitutively expressed, its stability is modulated by the redox-sensitive protein KEAP1 and other conditional binding partner regulators. The new era of NRF2 research has highlighted the cooperation between NRF2 and PIN1 in modifying its cytoprotective effect. Despite numerous studies, the understanding of the PIN1-NRF2 interaction remains limited. Herein, we described the binding interaction of PIN1 and three different 14-mer long phospho-peptides mimicking NRF2 protein using computer-based, biophysical, and biochemical approaches. According to our computational analyses, the residues positioned in the WW domain of PIN1 (Ser16, Arg17, Ser18, Tyr23, Ser32, Gln33, and Trp34) were found to be crucial for PIN1-NRF2 interactions. Biophysical FP assays were used to verify the computational prediction. The data demonstrated that Pintide, a peptide predominantly interacting with the PIN1 WW-domain, led to a significant reduction in the binding affinity of the NRF2 mimicking peptides. Moreover, we evaluated the impact of known PIN1 inhibitors (juglone, KPT-6566, and EGCG) on the PIN1-NRF2 interaction. Among the inhibitors, KPT-6566 showed the most potent inhibitory effect on PIN1-NRF2 interaction within an IC<jats:sub>50</jats:sub> range of 0.3–1.4 µM. Furthermore, our mass spectrometry analyses showed that KPT-6566 appeared to covalently modify PIN1 via conjugate addition, rather than disulfide exchange of the sulfonyl-acetate moiety. Altogether, such inhibitors would also be highly valuable molecular probes for further investigation of PIN1 regulation of NRF2 in the cellular context and potentially pave the way for drug molecules that specifically inhibit the cytoprotective effects of NRF2 in cancer."}],"acknowledgement":"The authors would like to thank the Ministry of National Education of Republic of Türkiye within the scope of the YLSY scholarship program for funding (AO). This article is based upon work from COST Action CA20121, supported by COST (European Cooperation in Science and Technology) (www.cost.eu) (https://benbedphar.org/about-benbedphar/). The molecular dynamics simulations reported in this paper were performed at TUBITAK ULAKBIM, High Performance and Grid Computing Center (TRUBA resources). The authors thank Dr Sharad Mistry for his support in acquiring and processing the MS data.","ddc":["570"],"OA_type":"gold","article_processing_charge":"Yes","month":"03","pmid":1,"oa_version":"Published Version","year":"2025","_id":"19529","title":"Identification and inhibition of PIN1-NRF2 protein–protein interactions through computational and biophysical approaches","article_number":"8907","department":[{"_id":"LeSa"}],"date_created":"2025-04-08T11:12:20Z","file_date_updated":"2025-04-10T06:21:11Z","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"publication_identifier":{"eissn":["2045-2322"]},"intvolume":"        15","language":[{"iso":"eng"}],"quality_controlled":"1","external_id":{"pmid":["40087364"],"isi":["001445507400002"]},"date_updated":"2025-09-30T11:33:37Z","OA_place":"publisher","has_accepted_license":"1","publication":"Scientific Reports","volume":15,"citation":{"ama":"Ozleyen A, Duran GN, Dönmez S, Ozbil M, Doveston RG, Tumer TB. Identification and inhibition of PIN1-NRF2 protein–protein interactions through computational and biophysical approaches. <i>Scientific Reports</i>. 2025;15. doi:<a href=\"https://doi.org/10.1038/s41598-025-89342-0\">10.1038/s41598-025-89342-0</a>","chicago":"Ozleyen, Adem, Gizem Nur Duran, Serhat Dönmez, Mehmet Ozbil, Richard G. Doveston, and Tugba Boyunegmez Tumer. “Identification and Inhibition of PIN1-NRF2 Protein–Protein Interactions through Computational and Biophysical Approaches.” <i>Scientific Reports</i>. Springer Nature, 2025. <a href=\"https://doi.org/10.1038/s41598-025-89342-0\">https://doi.org/10.1038/s41598-025-89342-0</a>.","short":"A. Ozleyen, G.N. Duran, S. Dönmez, M. Ozbil, R.G. Doveston, T.B. Tumer, Scientific Reports 15 (2025).","ieee":"A. Ozleyen, G. N. Duran, S. Dönmez, M. Ozbil, R. G. Doveston, and T. B. Tumer, “Identification and inhibition of PIN1-NRF2 protein–protein interactions through computational and biophysical approaches,” <i>Scientific Reports</i>, vol. 15. Springer Nature, 2025.","ista":"Ozleyen A, Duran GN, Dönmez S, Ozbil M, Doveston RG, Tumer TB. 2025. Identification and inhibition of PIN1-NRF2 protein–protein interactions through computational and biophysical approaches. Scientific Reports. 15, 8907.","mla":"Ozleyen, Adem, et al. “Identification and Inhibition of PIN1-NRF2 Protein–Protein Interactions through Computational and Biophysical Approaches.” <i>Scientific Reports</i>, vol. 15, 8907, Springer Nature, 2025, doi:<a href=\"https://doi.org/10.1038/s41598-025-89342-0\">10.1038/s41598-025-89342-0</a>.","apa":"Ozleyen, A., Duran, G. N., Dönmez, S., Ozbil, M., Doveston, R. G., &#38; Tumer, T. B. (2025). Identification and inhibition of PIN1-NRF2 protein–protein interactions through computational and biophysical approaches. <i>Scientific Reports</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41598-025-89342-0\">https://doi.org/10.1038/s41598-025-89342-0</a>"},"DOAJ_listed":"1","type":"journal_article","publisher":"Springer Nature","day":"14","doi":"10.1038/s41598-025-89342-0"},{"ddc":["530"],"OA_type":"gold","status":"public","date_published":"2025-04-04T00:00:00Z","abstract":[{"lang":"eng","text":"In standard quantum electrodynamics (QED), the so-called non-minimal (Pauli) coupling is suppressed for elementary particles and has no physical implications. Here, we show that the Pauli term naturally appears in a known family of Dirac materials—the lead-halide perovskites, suggesting a novel playground for the study of analog QED effects. We outline measurable manifestations of the Pauli term in the phenomena pertaining to (i) relativistic corrections to bound states (ii) the Klein paradox, and (iii) spin effects in scattering. In particular, we demonstrate that (a) the binding energy of an electron in the vicinity of a positively charged defect is noticeably decreased due to the polarizability of lead ions and the appearance of a Darwin-like term, (b) strong spin-orbit coupling due to the Pauli term affects the exciton states, and (c) scattering of an electron off an energy barrier with broken mirror symmetry produces spin polarization in the outgoing current. Our study adds to the understanding of quantum phenomena in lead-halide perovskites and paves the way for tabletop simulations of analog Dirac-Pauli equations."}],"scopus_import":"1","oa":1,"file":[{"access_level":"open_access","date_created":"2025-04-10T06:12:49Z","creator":"dernst","content_type":"application/pdf","relation":"main_file","file_size":592092,"file_id":"19536","checksum":"08b1a94b362bb65482887e50020810e5","success":1,"date_updated":"2025-04-10T06:12:49Z","file_name":"2025_njpQuantumMaterials_Kumar.pdf"}],"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","isi":1,"author":[{"last_name":"Shiva Kumar","first_name":"Abhishek","id":"5e9a6931-eb97-11eb-a6c2-e96f7058d77a","full_name":"Shiva Kumar, Abhishek"},{"first_name":"Mikhail","id":"2E65BB0E-F248-11E8-B48F-1D18A9856A87","full_name":"Maslov, Mikhail","orcid":"0000-0003-4074-2570","last_name":"Maslov"},{"first_name":"Mikhail","full_name":"Lemeshko, Mikhail","id":"37CB05FA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6990-7802","last_name":"Lemeshko"},{"id":"37D278BC-F248-11E8-B48F-1D18A9856A87","full_name":"Volosniev, Artem","first_name":"Artem","last_name":"Volosniev","orcid":"0000-0003-0393-5525"},{"full_name":"Alpichshev, Zhanybek","id":"45E67A2A-F248-11E8-B48F-1D18A9856A87","first_name":"Zhanybek","orcid":"0000-0002-7183-5203","last_name":"Alpichshev"}],"publication_status":"published","article_type":"original","title":"Massive Dirac-Pauli physics in lead-halide perovskites","oa_version":"Published Version","year":"2025","_id":"19531","month":"04","article_processing_charge":"Yes","external_id":{"isi":["001459830100002"]},"corr_author":"1","date_updated":"2025-09-30T11:32:32Z","OA_place":"publisher","has_accepted_license":"1","publication_identifier":{"eissn":["2397-4648"]},"intvolume":"        10","language":[{"iso":"eng"}],"quality_controlled":"1","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","image":"/images/cc_by_nc_nd.png","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","short":"CC BY-NC-ND (4.0)"},"article_number":"37","department":[{"_id":"GradSch"},{"_id":"ZhAl"},{"_id":"MiLe"}],"file_date_updated":"2025-04-10T06:12:49Z","date_created":"2025-04-08T18:13:06Z","related_material":{"link":[{"relation":"software","url":"https://git.ista.ac.at/mmaslov/dirac_pauli_LHP"}]},"type":"journal_article","day":"04","publisher":"Springer Nature","doi":"10.1038/s41535-025-00754-7","volume":10,"DOAJ_listed":"1","citation":{"short":"A. Shiva Kumar, M. Maslov, M. Lemeshko, A. Volosniev, Z. Alpichshev, Npj Quantum Materials 10 (2025).","ieee":"A. Shiva Kumar, M. Maslov, M. Lemeshko, A. Volosniev, and Z. Alpichshev, “Massive Dirac-Pauli physics in lead-halide perovskites,” <i>npj Quantum Materials</i>, vol. 10. Springer Nature, 2025.","mla":"Shiva Kumar, Abhishek, et al. “Massive Dirac-Pauli Physics in Lead-Halide Perovskites.” <i>Npj Quantum Materials</i>, vol. 10, 37, Springer Nature, 2025, doi:<a href=\"https://doi.org/10.1038/s41535-025-00754-7\">10.1038/s41535-025-00754-7</a>.","apa":"Shiva Kumar, A., Maslov, M., Lemeshko, M., Volosniev, A., &#38; Alpichshev, Z. (2025). Massive Dirac-Pauli physics in lead-halide perovskites. <i>Npj Quantum Materials</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41535-025-00754-7\">https://doi.org/10.1038/s41535-025-00754-7</a>","ista":"Shiva Kumar A, Maslov M, Lemeshko M, Volosniev A, Alpichshev Z. 2025. Massive Dirac-Pauli physics in lead-halide perovskites. npj Quantum Materials. 10, 37.","ama":"Shiva Kumar A, Maslov M, Lemeshko M, Volosniev A, Alpichshev Z. Massive Dirac-Pauli physics in lead-halide perovskites. <i>npj Quantum Materials</i>. 2025;10. doi:<a href=\"https://doi.org/10.1038/s41535-025-00754-7\">10.1038/s41535-025-00754-7</a>","chicago":"Shiva Kumar, Abhishek, Mikhail Maslov, Mikhail Lemeshko, Artem Volosniev, and Zhanybek Alpichshev. “Massive Dirac-Pauli Physics in Lead-Halide Perovskites.” <i>Npj Quantum Materials</i>. Springer Nature, 2025. <a href=\"https://doi.org/10.1038/s41535-025-00754-7\">https://doi.org/10.1038/s41535-025-00754-7</a>."},"publication":"npj Quantum Materials"},{"publication":"Journal of the London Mathematical Society","citation":{"chicago":"Glasgow, Margalit, Matthew Alan Kwan, Ashwin Sah, and Mehtaab Sawhney. “A Central Limit Theorem for the Matching Number of a Sparse Random Graph.” <i>Journal of the London Mathematical Society</i>. Wiley, 2025. <a href=\"https://doi.org/10.1112/jlms.70101\">https://doi.org/10.1112/jlms.70101</a>.","ama":"Glasgow M, Kwan MA, Sah A, Sawhney M. A central limit theorem for the matching number of a sparse random graph. <i>Journal of the London Mathematical Society</i>. 2025;111(4). doi:<a href=\"https://doi.org/10.1112/jlms.70101\">10.1112/jlms.70101</a>","ieee":"M. Glasgow, M. A. Kwan, A. Sah, and M. Sawhney, “A central limit theorem for the matching number of a sparse random graph,” <i>Journal of the London Mathematical Society</i>, vol. 111, no. 4. Wiley, 2025.","ista":"Glasgow M, Kwan MA, Sah A, Sawhney M. 2025. A central limit theorem for the matching number of a sparse random graph. Journal of the London Mathematical Society. 111(4), e70101.","apa":"Glasgow, M., Kwan, M. A., Sah, A., &#38; Sawhney, M. (2025). A central limit theorem for the matching number of a sparse random graph. <i>Journal of the London Mathematical Society</i>. Wiley. <a href=\"https://doi.org/10.1112/jlms.70101\">https://doi.org/10.1112/jlms.70101</a>","mla":"Glasgow, Margalit, et al. “A Central Limit Theorem for the Matching Number of a Sparse Random Graph.” <i>Journal of the London Mathematical Society</i>, vol. 111, no. 4, e70101, Wiley, 2025, doi:<a href=\"https://doi.org/10.1112/jlms.70101\">10.1112/jlms.70101</a>.","short":"M. Glasgow, M.A. Kwan, A. Sah, M. Sawhney, Journal of the London Mathematical Society 111 (2025)."},"volume":111,"publisher":"Wiley","day":"01","doi":"10.1112/jlms.70101","type":"journal_article","file_date_updated":"2025-04-15T13:18:43Z","date_created":"2025-04-13T22:01:19Z","department":[{"_id":"MaKw"}],"article_number":"e70101","tmp":{"short":"CC BY-NC (4.0)","name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)","image":"/images/cc_by_nc.png","legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode"},"language":[{"iso":"eng"}],"quality_controlled":"1","intvolume":"       111","publication_identifier":{"eissn":["1469-7750"],"issn":["0024-6107"]},"OA_place":"publisher","has_accepted_license":"1","date_updated":"2025-09-30T11:35:55Z","corr_author":"1","external_id":{"arxiv":["2402.05851"],"isi":["001473087200024"]},"article_processing_charge":"Yes (via OA deal)","month":"04","_id":"19554","issue":"4","year":"2025","oa_version":"Published Version","title":"A central limit theorem for the matching number of a sparse random graph","publication_status":"published","article_type":"original","project":[{"grant_number":"101076777","_id":"bd95085b-d553-11ed-ba76-e55d3349be45","name":"Randomness and structure in combinatorics"}],"author":[{"last_name":"Glasgow","first_name":"Margalit","full_name":"Glasgow, Margalit"},{"first_name":"Matthew Alan","id":"5fca0887-a1db-11eb-95d1-ca9d5e0453b3","full_name":"Kwan, Matthew Alan","last_name":"Kwan","orcid":"0000-0002-4003-7567"},{"first_name":"Ashwin","full_name":"Sah, Ashwin","last_name":"Sah"},{"last_name":"Sawhney","first_name":"Mehtaab","full_name":"Sawhney, Mehtaab"}],"isi":1,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","file":[{"file_id":"19564","file_size":392208,"relation":"main_file","content_type":"application/pdf","access_level":"open_access","creator":"dernst","date_created":"2025-04-15T13:18:43Z","date_updated":"2025-04-15T13:18:43Z","file_name":"2025_JourLondMathSoc_Glasgow.pdf","success":1,"checksum":"69ce9feaf64e776b99f3afd1041b1b11"}],"oa":1,"date_published":"2025-04-01T00:00:00Z","abstract":[{"lang":"eng","text":"In 1981, Karp and Sipser proved a law of large numbers for the matching number of a sparse Erdős–Rényi random graph, in an influential paper pioneering the so-called differential equation method for analysis of random graph processes. Strengthening this classical result, and answering a question of Aronson, Frieze and Pittel, we prove a central limit theorem in the same setting: the fluctuations in the matching number of a sparse random graph are asymptotically Gaussian. Our new contribution is to prove this central limit theorem in the subcritical and critical regimes, according to a celebrated algorithmic phase transition first observed by Karp and Sipser. Indeed, in the supercritical regime, a central limit theorem has recently been proved in the PhD thesis of Kreačić, using a stochastic generalisation of the differential equation method (comparing the so-called Karp–Sipser process to a system of stochastic differential equations). Our proof builds on these methods, and introduces new techniques to handle certain degeneracies present in the subcritical and critical cases. Curiously, our new techniques lead to a non-constructive result: we are able to characterise the fluctuations of the matching number around its mean, despite these fluctuations being much smaller than the error terms in our best estimates of the mean. We also prove a central limit theorem for the rank of the adjacency matrix of a sparse random graph."}],"scopus_import":"1","status":"public","OA_type":"hybrid","ddc":["510"],"arxiv":1,"acknowledgement":"We would like to thank Christina Goldschmidt and Eleonora Kreačić for insightful discussions and clarifications about their work in the thesis [26]. Matthew Kwan was supported by ERC Starting Grant ‘RANDSTRUCT’ No. 101076777. Ashwin Sah and Mehtaab Sawhney were supported by NSF Graduate Research Fellowship Program DGE-2141064. Ashwin Sah was supported by the PD Soros Fellowship.\r\nOpen access funding provided by Institute of Science and Technology Austria/KEMÖ."},{"oa_version":"Published Version","year":"2025","issue":"24","_id":"19555","title":"Synthesis of selectively 13C/2H/15N- labeled arginine to probe protein conformation and interaction by NMR spectroscopy","article_processing_charge":"Yes (in subscription journal)","month":"04","pmid":1,"status":"public","abstract":[{"text":"The charged arginine side chain is unique in determining many innate properties of proteins, contributing to stability and interaction surfaces, and directing allosteric regulation and enzymatic catalysis. NMR experiments can be used to reveal these processes at the molecular level, but it often requires selective insertion of carbon-13, nitrogen-15, and deuterium at defined atomic positions. We introduce a method to endow arginine residues with defined isotope patterns, combining synthetic organic chemistry and cell-based protein overexpression. The resulting proteins feature NMR active spin systems with optimized relaxation pathways leading to simplified NMR spectra with a sensitive response to changes in the chemical environment of the nuclei observed.","lang":"eng"}],"scopus_import":"1","date_published":"2025-04-25T00:00:00Z","acknowledgement":"We thank Lea Marie Becker for assistance with python scripts used to analyze the labeling efficiency, and Undina Guillerm, Rajkumar Singh, and Anna Kapitonova for help with protein production. This work was supported by the Austrian Science Fund (FWF; project number I5812-B) through a French-Austrian bi-national research project. We thank the Scientific Service Units (SSU) of Institute of Science and Technology Austria (ISTA) through resources provided by the NMR Facility, as well as the NMR center and MS center of the University of Vienna.","ddc":["540"],"OA_type":"hybrid","author":[{"id":"81dc668a-19fa-11f0-bf31-d56534059ef3","full_name":"Rohden, Darja","first_name":"Darja","last_name":"Rohden"},{"last_name":"Toscano","full_name":"Toscano, Giorgia","first_name":"Giorgia"},{"first_name":"Paul","full_name":"Schanda, Paul","id":"7B541462-FAF6-11E9-A490-E8DFE5697425","orcid":"0000-0002-9350-7606","last_name":"Schanda"},{"last_name":"Lichtenecker","full_name":"Lichtenecker, Roman J.","first_name":"Roman J."}],"project":[{"name":"AlloSpace. The emergence and mechanisms of allostery","_id":"eb9c82eb-77a9-11ec-83b8-aadd536561cf","grant_number":"I05812"}],"article_type":"original","publication_status":"published","oa":1,"file":[{"success":1,"checksum":"e3788628644b5aac666cf079b05f8fa7","file_name":"2025_ChemistryEur_Rohden.pdf","date_updated":"2025-08-05T12:59:24Z","content_type":"application/pdf","creator":"dernst","date_created":"2025-08-05T12:59:24Z","access_level":"open_access","file_id":"20136","file_size":2840681,"relation":"main_file"}],"isi":1,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","volume":31,"citation":{"short":"D. Rohden, G. Toscano, P. Schanda, R.J. Lichtenecker, Chemistry - A European Journal 31 (2025).","ieee":"D. Rohden, G. Toscano, P. Schanda, and R. J. Lichtenecker, “Synthesis of selectively 13C/2H/15N- labeled arginine to probe protein conformation and interaction by NMR spectroscopy,” <i>Chemistry - A European Journal</i>, vol. 31, no. 24. Wiley, 2025.","apa":"Rohden, D., Toscano, G., Schanda, P., &#38; Lichtenecker, R. J. (2025). Synthesis of selectively 13C/2H/15N- labeled arginine to probe protein conformation and interaction by NMR spectroscopy. <i>Chemistry - A European Journal</i>. Wiley. <a href=\"https://doi.org/10.1002/chem.202500408\">https://doi.org/10.1002/chem.202500408</a>","ista":"Rohden D, Toscano G, Schanda P, Lichtenecker RJ. 2025. Synthesis of selectively 13C/2H/15N- labeled arginine to probe protein conformation and interaction by NMR spectroscopy. Chemistry - A European Journal. 31(24), e202500408.","mla":"Rohden, Darja, et al. “Synthesis of Selectively 13C/2H/15N- Labeled Arginine to Probe Protein Conformation and Interaction by NMR Spectroscopy.” <i>Chemistry - A European Journal</i>, vol. 31, no. 24, e202500408, Wiley, 2025, doi:<a href=\"https://doi.org/10.1002/chem.202500408\">10.1002/chem.202500408</a>.","ama":"Rohden D, Toscano G, Schanda P, Lichtenecker RJ. Synthesis of selectively 13C/2H/15N- labeled arginine to probe protein conformation and interaction by NMR spectroscopy. <i>Chemistry - A European Journal</i>. 2025;31(24). doi:<a href=\"https://doi.org/10.1002/chem.202500408\">10.1002/chem.202500408</a>","chicago":"Rohden, Darja, Giorgia Toscano, Paul Schanda, and Roman J. Lichtenecker. “Synthesis of Selectively 13C/2H/15N- Labeled Arginine to Probe Protein Conformation and Interaction by NMR Spectroscopy.” <i>Chemistry - A European Journal</i>. Wiley, 2025. <a href=\"https://doi.org/10.1002/chem.202500408\">https://doi.org/10.1002/chem.202500408</a>."},"type":"journal_article","day":"25","doi":"10.1002/chem.202500408","publisher":"Wiley","publication":"Chemistry - A European Journal","publication_identifier":{"issn":["0947-6539"],"eissn":["1521-3765"]},"intvolume":"        31","language":[{"iso":"eng"}],"quality_controlled":"1","external_id":{"pmid":["40080421"],"isi":["001479486400019"]},"corr_author":"1","date_updated":"2025-09-30T11:35:05Z","OA_place":"publisher","has_accepted_license":"1","article_number":"e202500408","PlanS_conform":"1","department":[{"_id":"PaSc"}],"file_date_updated":"2025-08-05T12:59:24Z","date_created":"2025-04-13T22:01:19Z","acknowledged_ssus":[{"_id":"NMR"}],"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"}},{"author":[{"last_name":"Auricchio","first_name":"Gennaro","full_name":"Auricchio, Gennaro"},{"id":"63ff57e8-1fbb-11ee-88f2-f558ffc59cf1","full_name":"Brigati, Giovanni","first_name":"Giovanni","last_name":"Brigati"},{"first_name":"Paolo","full_name":"Giudici, Paolo","last_name":"Giudici"},{"last_name":"Toscani","first_name":"Giuseppe","full_name":"Toscani, Giuseppe"}],"publication_status":"published","article_type":"original","oa":1,"isi":1,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","status":"public","date_published":"2025-05-01T00:00:00Z","abstract":[{"text":"Measuring distances in a multidimensional setting is a challenging problem, which appears in many fields of science and engineering. In this paper, to measure the distance between two multivariate distributions, we introduce a new measure of discrepancy which is scale invariant and which, in the case of two independent copies of the same distribution, and after normalization, coincides with the scaling invariant multidimensional version of the Gini index recently proposed in [P. Giudici, E. Raffinetti and G. Toscani, Measuring multidimensional inequality: A new proposal based on the Fourier transform, preprint (2024), arXiv:2401.14012 ]. A byproduct of the analysis is an easy-to-handle discrepancy metric, obtained by application of the theory to a pair of Gaussian multidimensional densities. The obtained metric does improve the standard metrics, based on the mean squared error, as it is scale invariant. The importance of this theoretical finding is illustrated by means of a real problem that concerns measuring the importance of Environmental, Social and Governance factors for the growth of small and medium enterprises. ","lang":"eng"}],"scopus_import":"1","arxiv":1,"OA_type":"green","article_processing_charge":"No","month":"05","oa_version":"Preprint","issue":"5","_id":"19565","year":"2025","title":"Multivariate Gini-type discrepancies","department":[{"_id":"JaMa"}],"date_created":"2025-04-15T13:34:00Z","publication_identifier":{"issn":["0218-2025"],"eissn":["1793-6314"]},"quality_controlled":"1","language":[{"iso":"eng"}],"intvolume":"        35","external_id":{"isi":["001456337300001"],"arxiv":["2411.01052"]},"OA_place":"repository","date_updated":"2025-09-30T11:36:56Z","publication":"Mathematical Models and Methods in Applied Sciences","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2411.01052"}],"volume":35,"citation":{"apa":"Auricchio, G., Brigati, G., Giudici, P., &#38; Toscani, G. (2025). Multivariate Gini-type discrepancies. <i>Mathematical Models and Methods in Applied Sciences</i>. World Scientific Publishing. <a href=\"https://doi.org/10.1142/s0218202525500174\">https://doi.org/10.1142/s0218202525500174</a>","mla":"Auricchio, Gennaro, et al. “Multivariate Gini-Type Discrepancies.” <i>Mathematical Models and Methods in Applied Sciences</i>, vol. 35, no. 5, World Scientific Publishing, 2025, pp. 1267–96, doi:<a href=\"https://doi.org/10.1142/s0218202525500174\">10.1142/s0218202525500174</a>.","ista":"Auricchio G, Brigati G, Giudici P, Toscani G. 2025. Multivariate Gini-type discrepancies. Mathematical Models and Methods in Applied Sciences. 35(5), 1267–1296.","ieee":"G. Auricchio, G. Brigati, P. Giudici, and G. Toscani, “Multivariate Gini-type discrepancies,” <i>Mathematical Models and Methods in Applied Sciences</i>, vol. 35, no. 5. World Scientific Publishing, pp. 1267–1296, 2025.","short":"G. Auricchio, G. Brigati, P. Giudici, G. Toscani, Mathematical Models and Methods in Applied Sciences 35 (2025) 1267–1296.","chicago":"Auricchio, Gennaro, Giovanni Brigati, Paolo Giudici, and Giuseppe Toscani. “Multivariate Gini-Type Discrepancies.” <i>Mathematical Models and Methods in Applied Sciences</i>. World Scientific Publishing, 2025. <a href=\"https://doi.org/10.1142/s0218202525500174\">https://doi.org/10.1142/s0218202525500174</a>.","ama":"Auricchio G, Brigati G, Giudici P, Toscani G. Multivariate Gini-type discrepancies. <i>Mathematical Models and Methods in Applied Sciences</i>. 2025;35(5):1267-1296. doi:<a href=\"https://doi.org/10.1142/s0218202525500174\">10.1142/s0218202525500174</a>"},"type":"journal_article","doi":"10.1142/s0218202525500174","publisher":"World Scientific Publishing","day":"01","page":"1267-1296"},{"publication":"Remote Sensing of Environment","volume":324,"citation":{"short":"F. Antezana-Lopez, A. Casallas Garcia, G. Zhou, K. Zhang, G. Jing, A. Ali, E. Lopez-Barrera, L.C. Belalcazar, N. Rojas, H. Jiang, Remote Sensing of Environment 324 (2025).","ieee":"F. Antezana-Lopez <i>et al.</i>, “High-resolution anthropogenic emission inventories with deep learning in northern South America,” <i>Remote Sensing of Environment</i>, vol. 324. Elsevier, 2025.","ista":"Antezana-Lopez F, Casallas Garcia A, Zhou G, Zhang K, Jing G, Ali A, Lopez-Barrera E, Belalcazar LC, Rojas N, Jiang H. 2025. High-resolution anthropogenic emission inventories with deep learning in northern South America. Remote Sensing of Environment. 324, 114761.","apa":"Antezana-Lopez, F., Casallas Garcia, A., Zhou, G., Zhang, K., Jing, G., Ali, A., … Jiang, H. (2025). High-resolution anthropogenic emission inventories with deep learning in northern South America. <i>Remote Sensing of Environment</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.rse.2025.114761\">https://doi.org/10.1016/j.rse.2025.114761</a>","mla":"Antezana-Lopez, Franz, et al. “High-Resolution Anthropogenic Emission Inventories with Deep Learning in Northern South America.” <i>Remote Sensing of Environment</i>, vol. 324, 114761, Elsevier, 2025, doi:<a href=\"https://doi.org/10.1016/j.rse.2025.114761\">10.1016/j.rse.2025.114761</a>.","ama":"Antezana-Lopez F, Casallas Garcia A, Zhou G, et al. High-resolution anthropogenic emission inventories with deep learning in northern South America. <i>Remote Sensing of Environment</i>. 2025;324. doi:<a href=\"https://doi.org/10.1016/j.rse.2025.114761\">10.1016/j.rse.2025.114761</a>","chicago":"Antezana-Lopez, Franz, Alejandro Casallas Garcia, Guanhua Zhou, Kai Zhang, Guifei Jing, Aamir Ali, Ellie Lopez-Barrera, Luis Carlos Belalcazar, Nestor Rojas, and Hongzhi Jiang. “High-Resolution Anthropogenic Emission Inventories with Deep Learning in Northern South America.” <i>Remote Sensing of Environment</i>. Elsevier, 2025. <a href=\"https://doi.org/10.1016/j.rse.2025.114761\">https://doi.org/10.1016/j.rse.2025.114761</a>."},"type":"journal_article","ec_funded":1,"publisher":"Elsevier","day":"01","doi":"10.1016/j.rse.2025.114761","department":[{"_id":"CaMu"}],"article_number":"114761","date_created":"2025-04-17T09:04:17Z","publication_identifier":{"issn":["0034-4257"],"eissn":["1879-0704"]},"language":[{"iso":"eng"}],"quality_controlled":"1","intvolume":"       324","external_id":{"isi":["001475174300001"]},"has_accepted_license":"1","date_updated":"2025-12-30T08:15:35Z","article_processing_charge":"No","month":"07","oa_version":"None","_id":"19585","year":"2025","title":"High-resolution anthropogenic emission inventories with deep learning in northern South America","author":[{"full_name":"Antezana-Lopez, Franz","first_name":"Franz","last_name":"Antezana-Lopez"},{"first_name":"Alejandro","id":"92081129-2d75-11ef-a48d-b04dd7a2385a","full_name":"Casallas Garcia, Alejandro","orcid":"0000-0002-1988-5035","last_name":"Casallas Garcia"},{"full_name":"Zhou, Guanhua","first_name":"Guanhua","last_name":"Zhou"},{"last_name":"Zhang","full_name":"Zhang, Kai","first_name":"Kai"},{"full_name":"Jing, Guifei","first_name":"Guifei","last_name":"Jing"},{"last_name":"Ali","full_name":"Ali, Aamir","first_name":"Aamir"},{"last_name":"Lopez-Barrera","first_name":"Ellie","full_name":"Lopez-Barrera, Ellie"},{"full_name":"Belalcazar, Luis Carlos","first_name":"Luis Carlos","last_name":"Belalcazar"},{"full_name":"Rojas, Nestor","first_name":"Nestor","last_name":"Rojas"},{"last_name":"Jiang","full_name":"Jiang, Hongzhi","first_name":"Hongzhi"}],"publication_status":"published","article_type":"original","project":[{"grant_number":"101034413","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c","call_identifier":"H2020","name":"IST-BRIDGE: International postdoctoral program"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","isi":1,"status":"public","date_published":"2025-07-01T00:00:00Z","abstract":[{"lang":"eng","text":"Air quality in northern South America faces significant challenges due to insufficient high-resolution emission inventories and sparse atmospheric studies. This study addresses these gaps by developing a novel framework that integrates high-resolution nighttime light data from SDGSAT-1 and multisource remote sensing datasets with deep learning techniques to downscale emission inventories. The refined inventories are coupled with meteorological inputs into the Weather Research and Forecasting (WRF-Chem) model, enabling precise simulation of pollutant dynamics. Validated against ground measurements from Colombia's SISAIRE monitoring network, demonstrates significant improvements in spatiotemporal accuracy, particularly for particulate matter (PM) and nitrogen dioxide (NO₂) with error reductions of 22–30 % and correlation coefficients increasing from 0.68 to 0.85. These findings underscore the critical role of satellite-enhanced inventories in resolving localized emission patterns and seasonal variability, such as dry-season PM₁₀ spikes (150 % increase from wildfires). The framework provides policymakers with actionable insights to prioritize mitigation in rapidly urbanizing regions and manage transboundary pollution. By bridging data scarcity gaps, this replicable methodology offers transformative potential for global air quality management and public health protection, advocating for expanded ground monitoring networks and real-time satellite data integration in future applications."}],"scopus_import":"1","ddc":["550"],"acknowledgement":"This project was supported by the National Natural Science Foundation of China (Grant No. 42471425). The research findings are a component of the SDGSAT-1 Open Science Program, which is conducted by the International Research Center of Big Data for Sustainable Development Goals (CBAS). The data utilized in this study is sourced from SDGSAT-1 and provided by CBAS. Alejandro Casallas was supported by a fellowship awarded by the Abdus Salam International Centre for Theoretical Physics and also by the European Union's Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No 101034413. Ellie López-Barrera was supported by project No. IN.BG.086.24.015 from Universidad Sergio Arboleda.","OA_type":"closed access"},{"publication":"Developmental Cell","volume":60,"citation":{"ieee":"E. Benková, “Unlocking plant regeneration: The role for glutathione,” <i>Developmental Cell</i>, vol. 60, no. 8. Elsevier, pp. 1137–1139, 2025.","ista":"Benková E. 2025. Unlocking plant regeneration: The role for glutathione. Developmental Cell. 60(8), 1137–1139.","apa":"Benková, E. (2025). Unlocking plant regeneration: The role for glutathione. <i>Developmental Cell</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.devcel.2025.03.012\">https://doi.org/10.1016/j.devcel.2025.03.012</a>","mla":"Benková, Eva. “Unlocking Plant Regeneration: The Role for Glutathione.” <i>Developmental Cell</i>, vol. 60, no. 8, Elsevier, 2025, pp. 1137–39, doi:<a href=\"https://doi.org/10.1016/j.devcel.2025.03.012\">10.1016/j.devcel.2025.03.012</a>.","short":"E. Benková, Developmental Cell 60 (2025) 1137–1139.","chicago":"Benková, Eva. “Unlocking Plant Regeneration: The Role for Glutathione.” <i>Developmental Cell</i>. Elsevier, 2025. <a href=\"https://doi.org/10.1016/j.devcel.2025.03.012\">https://doi.org/10.1016/j.devcel.2025.03.012</a>.","ama":"Benková E. Unlocking plant regeneration: The role for glutathione. <i>Developmental Cell</i>. 2025;60(8):1137-1139. doi:<a href=\"https://doi.org/10.1016/j.devcel.2025.03.012\">10.1016/j.devcel.2025.03.012</a>"},"type":"journal_article","page":"1137-1139","day":"21","doi":"10.1016/j.devcel.2025.03.012","publisher":"Elsevier","department":[{"_id":"EvBe"}],"date_created":"2025-04-20T22:01:28Z","publication_identifier":{"eissn":["1878-1551"],"issn":["1534-5807"]},"intvolume":"        60","language":[{"iso":"eng"}],"quality_controlled":"1","external_id":{"isi":["001477400800001"],"pmid":["40262524"]},"corr_author":"1","date_updated":"2025-09-30T12:07:36Z","article_processing_charge":"No","month":"04","pmid":1,"oa_version":"None","year":"2025","_id":"19594","issue":"8","title":"Unlocking plant regeneration: The role for glutathione","author":[{"last_name":"Benková","orcid":"0000-0002-8510-9739","first_name":"Eva","full_name":"Benková, Eva","id":"38F4F166-F248-11E8-B48F-1D18A9856A87"}],"article_type":"letter_note","publication_status":"published","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","isi":1,"status":"public","scopus_import":"1","date_published":"2025-04-21T00:00:00Z","abstract":[{"lang":"eng","text":"In this issue of Developmental Cell, Lee et al. identify a pivotal role for glutathione (GSH) in plant regeneration, a vital biological process enabling plants to regrow tissues and organs after injury. Applying single-cell RNA sequencing (scRNA-seq) and live imaging, the authors demonstrate that GSH, released upon tissue damage, accelerates cell-cycle transitions, particularly shortening the G1 phase, thereby facilitating efficient organ regeneration."}],"OA_type":"closed access"},{"intvolume":"       162","quality_controlled":"1","language":[{"iso":"eng"}],"publication_identifier":{"eissn":["1089-7690"],"issn":["0021-9606"]},"date_updated":"2025-09-30T12:06:51Z","OA_place":"publisher","has_accepted_license":"1","external_id":{"pmid":["40197568"],"isi":["001466311300030"]},"corr_author":"1","file_date_updated":"2025-04-22T09:27:43Z","date_created":"2025-04-20T22:01:28Z","article_number":"144101","department":[{"_id":"AlBr"}],"tmp":{"short":"CC BY-NC (4.0)","name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)","image":"/images/cc_by_nc.png","legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode"},"citation":{"ama":"Davidson Y, Philipp A, Chakraborty S, Bronstein AM, Gershoni-Poranne R. How local is “local”? Deep learning reveals locality of the induced magnetic field of polycyclic aromatic hydrocarbons. <i>Journal of Chemical Physics</i>. 2025;162(14). doi:<a href=\"https://doi.org/10.1063/5.0257558\">10.1063/5.0257558</a>","chicago":"Davidson, Yair, Aviad Philipp, Sabyasachi Chakraborty, Alex M. Bronstein, and Renana Gershoni-Poranne. “How Local Is ‘Local’? Deep Learning Reveals Locality of the Induced Magnetic Field of Polycyclic Aromatic Hydrocarbons.” <i>Journal of Chemical Physics</i>. AIP Publishing, 2025. <a href=\"https://doi.org/10.1063/5.0257558\">https://doi.org/10.1063/5.0257558</a>.","short":"Y. Davidson, A. Philipp, S. Chakraborty, A.M. Bronstein, R. Gershoni-Poranne, Journal of Chemical Physics 162 (2025).","ista":"Davidson Y, Philipp A, Chakraborty S, Bronstein AM, Gershoni-Poranne R. 2025. How local is “local”? Deep learning reveals locality of the induced magnetic field of polycyclic aromatic hydrocarbons. Journal of Chemical Physics. 162(14), 144101.","apa":"Davidson, Y., Philipp, A., Chakraborty, S., Bronstein, A. M., &#38; Gershoni-Poranne, R. (2025). How local is “local”? Deep learning reveals locality of the induced magnetic field of polycyclic aromatic hydrocarbons. <i>Journal of Chemical Physics</i>. AIP Publishing. <a href=\"https://doi.org/10.1063/5.0257558\">https://doi.org/10.1063/5.0257558</a>","mla":"Davidson, Yair, et al. “How Local Is ‘Local’? Deep Learning Reveals Locality of the Induced Magnetic Field of Polycyclic Aromatic Hydrocarbons.” <i>Journal of Chemical Physics</i>, vol. 162, no. 14, 144101, AIP Publishing, 2025, doi:<a href=\"https://doi.org/10.1063/5.0257558\">10.1063/5.0257558</a>.","ieee":"Y. Davidson, A. Philipp, S. Chakraborty, A. M. Bronstein, and R. Gershoni-Poranne, “How local is ‘local’? Deep learning reveals locality of the induced magnetic field of polycyclic aromatic hydrocarbons,” <i>Journal of Chemical Physics</i>, vol. 162, no. 14. AIP Publishing, 2025."},"volume":162,"doi":"10.1063/5.0257558","day":"14","publisher":"AIP Publishing","related_material":{"link":[{"relation":"software","url":"https://gitlab.com/porannegroup/magnetic_locality"}]},"type":"journal_article","publication":"Journal of Chemical Physics","scopus_import":"1","abstract":[{"text":"We investigate the locality of magnetic response in polycyclic aromatic molecules using a novel deep-learning approach. Our method employs graph neural networks (GNNs) with a graph-of-rings representation to predict nucleus independent chemical shifts (NICS) in the space around the molecule. We train a series of models, each time reducing the size of the largest molecules used in training. The accuracy of prediction remains high (MAE < 0.5 ppm), even when training the model only on molecules with up to four rings, thus providing strong evidence for the locality of magnetic response. To overcome the known problem of generalization of GNNs, we implement a k-hop expansion strategy and succeed in achieving accurate predictions for molecules with up to 15 rings (almost 4 times the size of the largest training example). Our findings have implications for understanding the magnetic response in complex molecules and demonstrate a promising approach to overcoming GNN scalability limitations. Furthermore, the trained models enable rapid characterization, without the need for more expensive DFT calculations.","lang":"eng"}],"date_published":"2025-04-14T00:00:00Z","status":"public","OA_type":"hybrid","acknowledgement":"The authors express their gratitude to Professor Dr. Peter Chen for his continued support. The authors acknowledge the Branco Weiss Fellowship for supporting this research as part of a Society in Science grant and the Israel Science Foundation for financial support (Grant No. 1745/23 to R.G.-P.). R.G.-P. is a Branco Weiss Fellow, a Horev Fellow, and an Alon Scholarship recipient. A.M.B. was supported by the ERC StG EARS and the Israeli Science Foundation.","ddc":["000"],"project":[{"name":"Acoustics-based drone navigation and interaction","grant_number":"863839","_id":"92f4a086-16d5-11f0-9cad-c929f5c58b0c"}],"article_type":"original","publication_status":"published","author":[{"first_name":"Yair","full_name":"Davidson, Yair","last_name":"Davidson"},{"full_name":"Philipp, Aviad","first_name":"Aviad","last_name":"Philipp"},{"last_name":"Chakraborty","full_name":"Chakraborty, Sabyasachi","first_name":"Sabyasachi"},{"last_name":"Bronstein","orcid":"0000-0001-9699-8730","first_name":"Alexander","id":"58f3726e-7cba-11ef-ad8b-e6e8cb3904e6","full_name":"Bronstein, Alexander"},{"full_name":"Gershoni-Poranne, Renana","first_name":"Renana","last_name":"Gershoni-Poranne"}],"file":[{"file_id":"19606","file_size":7812182,"relation":"main_file","content_type":"application/pdf","creator":"dernst","date_created":"2025-04-22T09:27:43Z","access_level":"open_access","file_name":"2025_JourChemicalPhysics_Davidson.pdf","date_updated":"2025-04-22T09:27:43Z","success":1,"checksum":"20a31a4c506b52de863bab7d3ff989ef"}],"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","isi":1,"oa":1,"year":"2025","_id":"19595","issue":"14","oa_version":"Published Version","title":"How local is “local”? Deep learning reveals locality of the induced magnetic field of polycyclic aromatic hydrocarbons","article_processing_charge":"Yes (in subscription journal)","pmid":1,"month":"04"},{"type":"journal_article","doi":"10.3847/1538-4357/adab7a","day":"10","publisher":"IOP Publishing","volume":983,"DOAJ_listed":"1","citation":{"ama":"Weibel A, De Graaff A, Setton DJ, et al. RUBIES reveals a massive quiescent galaxy at z = 7.3. <i>The Astrophysical Journal</i>. 2025;983(1). doi:<a href=\"https://doi.org/10.3847/1538-4357/adab7a\">10.3847/1538-4357/adab7a</a>","chicago":"Weibel, Andrea, Anna De Graaff, David J. Setton, Tim B. Miller, Pascal A. Oesch, Gabriel Brammer, Claudia D.P. Lagos, et al. “RUBIES Reveals a Massive Quiescent Galaxy at z = 7.3.” <i>The Astrophysical Journal</i>. IOP Publishing, 2025. <a href=\"https://doi.org/10.3847/1538-4357/adab7a\">https://doi.org/10.3847/1538-4357/adab7a</a>.","short":"A. Weibel, A. De Graaff, D.J. Setton, T.B. Miller, P.A. Oesch, G. Brammer, C.D.P. Lagos, K.E. Whitaker, C.C. Williams, J.F.W. Baggen, R. Bezanson, L.A. Boogaard, N.J. Cleri, J.E. Greene, M. Hirschmann, R.E. Hviding, A. Kuruvanthodi, I. Labbé, J. Leja, M.V. Maseda, J.J. Matthee, I. Mcconachie, R.P. Naidu, G. Roberts-Borsani, D. Schaerer, K.A. Suess, F. Valentino, P. Van Dokkum, B. Wang, The Astrophysical Journal 983 (2025).","ieee":"A. Weibel <i>et al.</i>, “RUBIES reveals a massive quiescent galaxy at z = 7.3,” <i>The Astrophysical Journal</i>, vol. 983, no. 1. IOP Publishing, 2025.","ista":"Weibel A, De Graaff A, Setton DJ, Miller TB, Oesch PA, Brammer G, Lagos CDP, Whitaker KE, Williams CC, Baggen JFW, Bezanson R, Boogaard LA, Cleri NJ, Greene JE, Hirschmann M, Hviding RE, Kuruvanthodi A, Labbé I, Leja J, Maseda MV, Matthee JJ, Mcconachie I, Naidu RP, Roberts-Borsani G, Schaerer D, Suess KA, Valentino F, Van Dokkum P, Wang B. 2025. RUBIES reveals a massive quiescent galaxy at z = 7.3. The Astrophysical Journal. 983(1), 11.","apa":"Weibel, A., De Graaff, A., Setton, D. J., Miller, T. B., Oesch, P. A., Brammer, G., … Wang, B. (2025). RUBIES reveals a massive quiescent galaxy at z = 7.3. <i>The Astrophysical Journal</i>. IOP Publishing. <a href=\"https://doi.org/10.3847/1538-4357/adab7a\">https://doi.org/10.3847/1538-4357/adab7a</a>","mla":"Weibel, Andrea, et al. “RUBIES Reveals a Massive Quiescent Galaxy at z = 7.3.” <i>The Astrophysical Journal</i>, vol. 983, no. 1, 11, IOP Publishing, 2025, doi:<a href=\"https://doi.org/10.3847/1538-4357/adab7a\">10.3847/1538-4357/adab7a</a>."},"publication":"The Astrophysical Journal","external_id":{"arxiv":["2409.03829"],"isi":["001457334900001"]},"has_accepted_license":"1","OA_place":"publisher","date_updated":"2026-02-16T12:42:28Z","publication_identifier":{"issn":["0004-637X"],"eissn":["1538-4357"]},"language":[{"iso":"eng"}],"quality_controlled":"1","intvolume":"       983","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"department":[{"_id":"JoMa"}],"article_number":"11","date_created":"2025-04-20T22:01:28Z","file_date_updated":"2025-04-22T09:08:17Z","title":"RUBIES reveals a massive quiescent galaxy at z = 7.3","oa_version":"Published Version","issue":"1","_id":"19596","year":"2025","month":"04","article_processing_charge":"Yes","ddc":["520"],"arxiv":1,"acknowledgement":"We thank the PRIMER team for making their imaging data publicly available immediately. This work is based on observations made with the NASA/ESA/CSA James Webb Space Telescope. The data were obtained from the Mikulski Archive for Space Telescopes at the Space Telescope Science Institute, which is operated by the Association of Universities for Research in Astronomy, Inc., under NASA contract NAS 5-03127 for JWST. These observations are associated with program #4233. Support for program #4233 was provided by NASA through a grant from the Space Telescope Science Institute, which is operated by the Association of Universities for Research in Astronomy, Inc., under NASA contract NAS 5-03127. This research was supported by the International Space Science Institute (ISSI) in Bern, through ISSI International Team project #562. The Cosmic Dawn Center is funded by the Danish National Research Foundation (DNRF140). This work has received funding from the Swiss State Secretariat for Education, Research and Innovation (SERI), under contract number MB22.00072, as well as from the Swiss National Science Foundation (SNSF), through project grant 200020_207349. Support for this work was provided by The Brinson Foundation through a Brinson Prize Fellowship grant. Support for this work for R.P.N. was provided by NASA through the NASA Hubble Fellowship grant HST-HF2-51515.001-A, awarded by the Space Telescope Science Institute, which is operated by the Association of Universities for Research in Astronomy, Incorporated, under NASA contract NAS5-26555. T.B.M. was supported by a CIERA fellowship.\r\nAll software packages used in this work are publicly available on Github: grizli, msafit, msaexp, Prospector, and sedpy. We acknowledge: astropy (Astropy Collaboration et al. 2013, 2018, 2022), matplotlib (J. D. Hunter 2007), numpy (C. R. Harris et al. 2020), scipy (P. Virtanen et al. 2020), lmfit (M. Newville et al. 2024), eMPT (N. Bonaventura et al. 2023), the jwst pipeline (H. Bushouse et al. 2024), msaexp (G. Brammer 2024a), and grizli (G. Brammer 2024b),.","OA_type":"gold","status":"public","abstract":[{"lang":"eng","text":"We report the spectroscopic discovery of a massive quiescent galaxy at zspec = 7.29 ± 0.01, just ∼700 Myr after the big bang. RUBIES-UDS-QG-z7 was selected from public JWST/NIRCam and MIRI imaging from the PRIMER survey and observed with JWST/NIRSpec as part of RUBIES. The NIRSpec/PRISM spectrum reveals one of the strongest Balmer breaks observed thus far at z > 6, with no emission lines but tentative Balmer and Ca absorption features, as well as a Lyman break. Simultaneous modeling of the NIRSpec/PRISM spectrum and NIRCam and MIRI photometry (spanning 0.9–18 μm) shows that the galaxy formed a stellar mass of\r\n(math. formular) before z ∼ 8 and ceased forming stars 50–100 Myr prior to the time of observation, resulting in log (sSFR/Gyr- 1) < -1 . We measure a small physical size of (math formular) , which implies a high stellarmass surface density within the effective radius of (math formular) comparable to the highest densities measured in quiescent galaxies at z ∼ 2–5. The 3D stellar-mass density profile of RUBIES-UDS-QG-z7 is remarkably similar to the central densities of local massive ellipticals, suggesting that at least some of their cores may have already been in place at z > 7. The discovery of RUBIES-UDS-QG-z7 has strong implications for galaxy formation models: the estimated number density of quiescent galaxies at z ∼ 7 is >100 × larger than predicted from any model to date, indicating that quiescent galaxies have formed earlier than previously expected. "}],"scopus_import":"1","date_published":"2025-04-10T00:00:00Z","oa":1,"isi":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file":[{"creator":"dernst","date_created":"2025-04-22T09:08:17Z","access_level":"open_access","content_type":"application/pdf","file_size":1964589,"relation":"main_file","file_id":"19605","checksum":"a1132e0b18bb643f9a32674c6694375a","success":1,"file_name":"2025_AstrophysicalJour_Weibel.pdf","date_updated":"2025-04-22T09:08:17Z"}],"author":[{"full_name":"Weibel, Andrea","first_name":"Andrea","last_name":"Weibel"},{"last_name":"De Graaff","first_name":"Anna","full_name":"De Graaff, Anna"},{"last_name":"Setton","full_name":"Setton, David J.","first_name":"David J."},{"last_name":"Miller","first_name":"Tim B.","full_name":"Miller, Tim B."},{"first_name":"Pascal A.","full_name":"Oesch, Pascal A.","last_name":"Oesch"},{"full_name":"Brammer, Gabriel","first_name":"Gabriel","last_name":"Brammer"},{"first_name":"Claudia D.P.","full_name":"Lagos, Claudia D.P.","last_name":"Lagos"},{"last_name":"Whitaker","full_name":"Whitaker, Katherine E.","first_name":"Katherine E."},{"last_name":"Williams","full_name":"Williams, Christina C.","first_name":"Christina C."},{"first_name":"Josephine F.W.","full_name":"Baggen, Josephine F.W.","last_name":"Baggen"},{"last_name":"Bezanson","full_name":"Bezanson, Rachel","first_name":"Rachel"},{"last_name":"Boogaard","full_name":"Boogaard, Leindert A.","first_name":"Leindert A."},{"last_name":"Cleri","first_name":"Nikko J.","full_name":"Cleri, Nikko J."},{"last_name":"Greene","first_name":"Jenny E.","full_name":"Greene, Jenny E."},{"first_name":"Michaela","full_name":"Hirschmann, Michaela","last_name":"Hirschmann"},{"last_name":"Hviding","full_name":"Hviding, Raphael E.","first_name":"Raphael E."},{"last_name":"Kuruvanthodi","full_name":"Kuruvanthodi, Adarsh","first_name":"Adarsh"},{"first_name":"Ivo","full_name":"Labbé, Ivo","last_name":"Labbé"},{"full_name":"Leja, Joel","first_name":"Joel","last_name":"Leja"},{"full_name":"Maseda, Michael V.","first_name":"Michael V.","last_name":"Maseda"},{"orcid":"0000-0003-2871-127X","last_name":"Matthee","first_name":"Jorryt J","full_name":"Matthee, Jorryt J","id":"7439a258-f3c0-11ec-9501-9df22fe06720"},{"last_name":"Mcconachie","full_name":"Mcconachie, Ian","first_name":"Ian"},{"full_name":"Naidu, Rohan P.","first_name":"Rohan P.","last_name":"Naidu"},{"full_name":"Roberts-Borsani, Guido","first_name":"Guido","last_name":"Roberts-Borsani"},{"first_name":"Daniel","full_name":"Schaerer, Daniel","last_name":"Schaerer"},{"first_name":"Katherine A.","full_name":"Suess, Katherine A.","last_name":"Suess"},{"first_name":"Francesco","full_name":"Valentino, Francesco","last_name":"Valentino"},{"last_name":"Van Dokkum","full_name":"Van Dokkum, Pieter","first_name":"Pieter"},{"first_name":"Bingjie","full_name":"Wang, Bingjie","last_name":"Wang"}],"article_type":"original","publication_status":"published"},{"date_created":"2025-04-20T22:01:28Z","file_date_updated":"2025-04-22T09:00:08Z","article_number":"023022","department":[{"_id":"GeKa"}],"PlanS_conform":"1","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"acknowledged_ssus":[{"_id":"M-Shop"},{"_id":"NanoFab"}],"intvolume":"         7","quality_controlled":"1","language":[{"iso":"eng"}],"publication_identifier":{"issn":["2643-1564"]},"date_updated":"2025-11-06T14:22:43Z","OA_place":"publisher","has_accepted_license":"1","corr_author":"1","publication":"Physical Review Research","citation":{"ama":"Valentini M, Souto RS, Borovkov M, et al. Subgap transport in superconductor-semiconductor hybrid islands: Weak and strong coupling regimes. <i>Physical Review Research</i>. 2025;7(2). doi:<a href=\"https://doi.org/10.1103/PhysRevResearch.7.023022\">10.1103/PhysRevResearch.7.023022</a>","chicago":"Valentini, Marco, Rubén Seoane Souto, Maksim Borovkov, Peter Krogstrup, Yigal Meir, Martin Leijnse, Jeroen Danon, and Georgios Katsaros. “Subgap Transport in Superconductor-Semiconductor Hybrid Islands: Weak and Strong Coupling Regimes.” <i>Physical Review Research</i>. American Physical Society, 2025. <a href=\"https://doi.org/10.1103/PhysRevResearch.7.023022\">https://doi.org/10.1103/PhysRevResearch.7.023022</a>.","short":"M. Valentini, R.S. Souto, M. Borovkov, P. Krogstrup, Y. Meir, M. Leijnse, J. Danon, G. Katsaros, Physical Review Research 7 (2025).","ieee":"M. Valentini <i>et al.</i>, “Subgap transport in superconductor-semiconductor hybrid islands: Weak and strong coupling regimes,” <i>Physical Review Research</i>, vol. 7, no. 2. American Physical Society, 2025.","mla":"Valentini, Marco, et al. “Subgap Transport in Superconductor-Semiconductor Hybrid Islands: Weak and Strong Coupling Regimes.” <i>Physical Review Research</i>, vol. 7, no. 2, 023022, American Physical Society, 2025, doi:<a href=\"https://doi.org/10.1103/PhysRevResearch.7.023022\">10.1103/PhysRevResearch.7.023022</a>.","ista":"Valentini M, Souto RS, Borovkov M, Krogstrup P, Meir Y, Leijnse M, Danon J, Katsaros G. 2025. Subgap transport in superconductor-semiconductor hybrid islands: Weak and strong coupling regimes. Physical Review Research. 7(2), 023022.","apa":"Valentini, M., Souto, R. S., Borovkov, M., Krogstrup, P., Meir, Y., Leijnse, M., … Katsaros, G. (2025). Subgap transport in superconductor-semiconductor hybrid islands: Weak and strong coupling regimes. <i>Physical Review Research</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevResearch.7.023022\">https://doi.org/10.1103/PhysRevResearch.7.023022</a>"},"DOAJ_listed":"1","volume":7,"doi":"10.1103/PhysRevResearch.7.023022","day":"01","publisher":"American Physical Society","type":"journal_article","project":[{"name":"Center for Correlated Quantum Materials and Solid State Quantum Systems: Conventional  and unconventional topological superconductors","_id":"34a66131-11ca-11ed-8bc3-a31681c6b03e","grant_number":"F8606"}],"article_type":"original","publication_status":"published","author":[{"last_name":"Valentini","first_name":"Marco","id":"C0BB2FAC-D767-11E9-B658-BC13E6697425","full_name":"Valentini, Marco"},{"last_name":"Souto","full_name":"Souto, Rubén Seoane","first_name":"Rubén Seoane"},{"last_name":"Borovkov","first_name":"Maksim","full_name":"Borovkov, Maksim","id":"1fd0975f-8b61-11ed-b69e-d149334f28c5"},{"last_name":"Krogstrup","full_name":"Krogstrup, Peter","first_name":"Peter"},{"last_name":"Meir","first_name":"Yigal","full_name":"Meir, Yigal"},{"first_name":"Martin","full_name":"Leijnse, Martin","last_name":"Leijnse"},{"full_name":"Danon, Jeroen","first_name":"Jeroen","last_name":"Danon"},{"full_name":"Katsaros, Georgios","id":"38DB5788-F248-11E8-B48F-1D18A9856A87","first_name":"Georgios","last_name":"Katsaros","orcid":"0000-0001-8342-202X"}],"file":[{"relation":"main_file","file_size":1977581,"file_id":"19604","access_level":"open_access","creator":"dernst","date_created":"2025-04-22T09:00:08Z","content_type":"application/pdf","date_updated":"2025-04-22T09:00:08Z","file_name":"2025_PhysReviewResearch_Valentini.pdf","checksum":"535351066e9c900340ef014893a09ac8","success":1}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa":1,"abstract":[{"lang":"eng","text":"Superconductor–semiconductor hybrid systems play a crucial role in realizing nanoscale quantum devices, including hybrid qubits, Majorana bound states, and Kitaev chains. For such hybrid devices, subgap states play a prominent role in their operation. In this paper, we study these subgap states via Coulomb and tunneling spectroscopy through a superconducting island defined in a semiconductor nanowire fully coated by a superconductor. We systematically explore regimes ranging from an almost decoupled island to the open configuration. In the weak-coupling regime, the experimental observations are very similar in the absence of a magnetic field and when one flux quantum pierces the superconducting shell. Conversely, in the strong-coupling regime, significant distinctions emerge between the two cases. We attribute this distinct behavior to the existence of subgap states at one flux quantum, which become observable only for sufficiently strong coupling to the leads. We support our interpretation using a simple model to describe transport through the island. Our study highlights the importance of studying a broad range of tunnel couplings for understanding the rich physics of hybrid devices."}],"scopus_import":"1","date_published":"2025-04-01T00:00:00Z","status":"public","OA_type":"hybrid","acknowledgement":"This research was supported by the Scientific Service Units of ISTA, through resources provided by the MIBA Machine Shop and the Nanofabrication facility. This research and related results were made possible with the support of the FWF Project with DOI10.55776/F86. We acknowledge support from the European Research Council under the European Unions Horizon 2020 research and innovation programme under Grant Agreement No. 856526, the Swedish Research Council under Grant Agreement No. 2020-03412, the Spanish Comunidad de Madrid (CM) “Talento Program” (Project No. 2022-T1/IND-24070), the Spanish Ministry of Science, innovation, and Universities through Grant PID2022-140552NA-I00 and NanoLund.","ddc":["530"],"article_processing_charge":"Yes","month":"04","year":"2025","_id":"19597","issue":"2","oa_version":"Published Version","title":"Subgap transport in superconductor-semiconductor hybrid islands: Weak and strong coupling regimes"},{"status":"public","abstract":[{"text":"Advances in nickel catalysis have significantly broadened the synthetic chemists’ toolbox, particularly through methodologies leveraging paramagnetic nickel species via photoredox catalysis or electrochemistry. Key to these reactions is the oxidation state modulation of nickel via single-electron transfer events. Recent mechanistic studies indicate that C(sp2)–heteroatom bond formations proceed through NiI/NiIII cycles. Related C(sp2)–C(sp3) cross-couplings operate via the photocatalytic generation of C-centered radicals and a catalytic cycle that involves Ni0, NiI, and NiIII species. Here, we show that light-mediated nickel-catalyzed C(sp2)–C(sp3) bond formations can be carried out without using exogenous photoredox catalysts but with a photoactive ligand. In a pursuit of expanding the scope of C(sp2)–heteroatom couplings using donor–acceptor ligands, we identified a photoactive nickel complex capable of catalyzing cross-couplings between aryl halides and benzyltrifluoroborate salts. Mechanistic investigations provide evidence that transmetalation between a photochemically generated NiI species and the organoboron compound is the key catalytic step in a NiI/NiIII catalytic cycle under these conditions.","lang":"eng"}],"date_published":"2025-04-11T00:00:00Z","scopus_import":"1","ddc":["540"],"acknowledgement":"This research was supported by the Scientific Service Units (SSU) of ISTA through resources provided by the Lab Support Facility (LSF), Mass Spec Facility, and NMR Facility. We gratefully acknowledge the Institute of Science and Technology Austria (ISTA) and the Max-Planck Society for their generous financial support. R.M.v.d.V. and B.P. thank the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany’s Excellence Strategy – EXC 2008 – 390540038 – UniSysCat for funding. B.P. thanks the DFG (PI 1635/2-19), the Boehringer Ingelheim Foundation (Plus 3 Perspectives Programme), and the FWF (Austrian Science Fund; PAT 1250924) for financial support. J.H.B. acknowledges the Robert C. and Carolyn J. Springborn Endowment for Student Support Program at the University of Illinois Urbana–Champaign. R.F.W. was supported by a fellowship from the Deutscher Akademischer Austauschdienst (DAAD). We thank Dr. John J. Molloy (MPICI) for scientific discussions.","OA_type":"hybrid","author":[{"last_name":"Anghileri","first_name":"Lucia","id":"7b65e46e-1f51-11f0-8ea0-faa153157f5e","full_name":"Anghileri, Lucia"},{"last_name":"Baunis","first_name":"Haralds","full_name":"Baunis, Haralds","id":"2eea55ec-e8ec-11ed-86cb-d9c76787acfe"},{"first_name":"Aleksander","full_name":"Bena, Aleksander","id":"4197c39e-e8ec-11ed-86cb-afed934cd664","last_name":"Bena"},{"last_name":"Giannoudis","first_name":"Christos","full_name":"Giannoudis, Christos","id":"1bd506c6-e8ec-11ed-86cb-d495f63f2dcd"},{"full_name":"Burke, John H.","first_name":"John H.","last_name":"Burke"},{"first_name":"Susanne","full_name":"Reischauer, Susanne","last_name":"Reischauer"},{"first_name":"Christoph","full_name":"Merschjann, Christoph","last_name":"Merschjann"},{"first_name":"Rachel F.","full_name":"Wallick, Rachel F.","last_name":"Wallick"},{"full_name":"Al Said, Tarek","first_name":"Tarek","last_name":"Al Said"},{"last_name":"Adams","first_name":"Callum E","id":"126d6d0f-fdc1-11ee-bb4a-9f462709fa9d","full_name":"Adams, Callum E"},{"last_name":"Simionato","first_name":"Gianluca","full_name":"Simionato, Gianluca"},{"last_name":"Kovalenko","first_name":"Sergey","full_name":"Kovalenko, Sergey"},{"last_name":"Dell’Amico","full_name":"Dell’Amico, Luca","first_name":"Luca"},{"full_name":"Van Der Veen, Renske M.","first_name":"Renske M.","last_name":"Van Der Veen"},{"first_name":"Bartholomäus","full_name":"Pieber, Bartholomäus","id":"93e5e5b2-0da6-11ed-8a41-af589a024726","orcid":"0000-0001-8689-388X","last_name":"Pieber"}],"publication_status":"published","article_type":"original","project":[{"name":"Photoactive ligands for transformative nickel catalysis","_id":"8f1d607d-16d5-11f0-9cad-ab453295ba5e","grant_number":"PAT 1250924"}],"oa":1,"isi":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file":[{"success":1,"checksum":"7f2b6a3c23b062490f37cce10ced46aa","file_name":"2025_JACS_Anghileri.pdf","date_updated":"2025-08-05T13:04:42Z","content_type":"application/pdf","date_created":"2025-08-05T13:04:42Z","creator":"dernst","access_level":"open_access","file_id":"20137","file_size":4179314,"relation":"main_file"}],"oa_version":"Published Version","issue":"16","_id":"19599","year":"2025","title":"Evidence for a unifying NiI/NiIII mechanism in light-mediated cross-coupling catalysis","article_processing_charge":"Yes (via OA deal)","month":"04","pmid":1,"publication_identifier":{"issn":["0002-7863"],"eissn":["1520-5126"]},"quality_controlled":"1","language":[{"iso":"eng"}],"intvolume":"       147","corr_author":"1","external_id":{"pmid":["40211781"],"isi":["001465858000001"]},"OA_place":"publisher","has_accepted_license":"1","date_updated":"2025-10-02T08:22:12Z","PlanS_conform":"1","department":[{"_id":"BaPi"}],"date_created":"2025-04-20T22:01:28Z","file_date_updated":"2025-08-05T13:04:42Z","acknowledged_ssus":[{"_id":"LifeSc"},{"_id":"NMR"}],"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"volume":147,"citation":{"chicago":"Anghileri, Lucia, Haralds Baunis, Aleksander Bena, Christos Giannoudis, John H. Burke, Susanne Reischauer, Christoph Merschjann, et al. “Evidence for a Unifying NiI/NiIII Mechanism in Light-Mediated Cross-Coupling Catalysis.” <i>Journal of the American Chemical Society</i>. American Chemical Society, 2025. <a href=\"https://doi.org/10.1021/jacs.4c16050\">https://doi.org/10.1021/jacs.4c16050</a>.","ama":"Anghileri L, Baunis H, Bena A, et al. Evidence for a unifying NiI/NiIII mechanism in light-mediated cross-coupling catalysis. <i>Journal of the American Chemical Society</i>. 2025;147(16):13169–13179. doi:<a href=\"https://doi.org/10.1021/jacs.4c16050\">10.1021/jacs.4c16050</a>","mla":"Anghileri, Lucia, et al. “Evidence for a Unifying NiI/NiIII Mechanism in Light-Mediated Cross-Coupling Catalysis.” <i>Journal of the American Chemical Society</i>, vol. 147, no. 16, American Chemical Society, 2025, pp. 13169–13179, doi:<a href=\"https://doi.org/10.1021/jacs.4c16050\">10.1021/jacs.4c16050</a>.","apa":"Anghileri, L., Baunis, H., Bena, A., Giannoudis, C., Burke, J. H., Reischauer, S., … Pieber, B. (2025). Evidence for a unifying NiI/NiIII mechanism in light-mediated cross-coupling catalysis. <i>Journal of the American Chemical Society</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/jacs.4c16050\">https://doi.org/10.1021/jacs.4c16050</a>","ista":"Anghileri L, Baunis H, Bena A, Giannoudis C, Burke JH, Reischauer S, Merschjann C, Wallick RF, Al Said T, Adams CE, Simionato G, Kovalenko S, Dell’Amico L, Van Der Veen RM, Pieber B. 2025. Evidence for a unifying NiI/NiIII mechanism in light-mediated cross-coupling catalysis. Journal of the American Chemical Society. 147(16), 13169–13179.","ieee":"L. Anghileri <i>et al.</i>, “Evidence for a unifying NiI/NiIII mechanism in light-mediated cross-coupling catalysis,” <i>Journal of the American Chemical Society</i>, vol. 147, no. 16. American Chemical Society, pp. 13169–13179, 2025.","short":"L. Anghileri, H. Baunis, A. Bena, C. Giannoudis, J.H. Burke, S. Reischauer, C. Merschjann, R.F. Wallick, T. Al Said, C.E. Adams, G. Simionato, S. Kovalenko, L. Dell’Amico, R.M. Van Der Veen, B. Pieber, Journal of the American Chemical Society 147 (2025) 13169–13179."},"type":"journal_article","day":"11","doi":"10.1021/jacs.4c16050","publisher":"American Chemical Society","page":"13169–13179","publication":"Journal of the American Chemical Society"},{"oa":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","author":[{"last_name":"Avarikioti","first_name":"Zeta","full_name":"Avarikioti, Zeta"},{"last_name":"Bastankhah","first_name":"Mahsa","full_name":"Bastankhah, Mahsa"},{"first_name":"Mohammad Ali","full_name":"Maddah-Ali, Mohammad Ali","last_name":"Maddah-Ali"},{"first_name":"Krzysztof Z","id":"3E04A7AA-F248-11E8-B48F-1D18A9856A87","full_name":"Pietrzak, Krzysztof Z","orcid":"0000-0002-9139-1654","last_name":"Pietrzak"},{"full_name":"Svoboda, Jakub","id":"130759D2-D7DD-11E9-87D2-DE0DE6697425","first_name":"Jakub","orcid":"0000-0002-1419-3267","last_name":"Svoboda"},{"orcid":"0009-0001-3676-4809","last_name":"Yeo","id":"2D82B818-F248-11E8-B48F-1D18A9856A87","full_name":"Yeo, Michelle X","first_name":"Michelle X"}],"publication_status":"published","project":[{"grant_number":"863818","_id":"0599E47C-7A3F-11EA-A408-12923DDC885E","call_identifier":"H2020","name":"Formal Methods for Stochastic Models: Algorithms and Applications"}],"conference":{"location":"Bydgoszcz, Poland","end_date":"2024-09-20","name":"ESORICS: European Symposium on Research in Computer Security","start_date":"2024-09-16"},"acknowledgement":"This work was supported in part by the ERC CoG 863818 (ForM-SMArt), Austrian Science Fund (FWF) 10.55776/COE12, and MOE-T2EP20122-0014 (Data-Driven Distributed Algorithms) grants.","OA_type":"green","status":"public","date_published":"2025-04-01T00:00:00Z","scopus_import":"1","abstract":[{"lang":"eng","text":"In this work, we explore route discovery in private payment channel networks. We first determine what “ideal\" privacy for a routing protocol means in this setting. We observe that protocols achieving this strong privacy definition exist by leveraging Multi-Party Computation but they are inherently inefficient as they must involve the entire network. We then present protocols with weaker privacy guarantees but much better efficiency (involving only a small fraction of the nodes). The core idea is that both sender and receiver gossip a message which propagates through the network, and the moment any node in the network receives both messages, a path is found. In our first protocol the message is always sent to all neighbouring nodes with a delay proportional to the fees of that edge. In our second protocol the message is only sent to one neighbour chosen randomly with a probability proportional to its degree. We additionally propose a more realistic notion of privacy in order to measure the privacy leakage of our protocols in practice. Our realistic notion of privacy challenges an adversary that join the network with a fixed budget to create channels to guess the sender and receiver of a transaction upon receiving messages from our protocols. Simulations of our protocols on the Lightning network topology (for random transactions and uniform fees) show that 1) forming edges with high degree nodes is a more effective attack strategy for the adversary, 2) there is a tradeoff between the number of nodes involved in our protocols (privacy) and the optimality of the discovered path, and 3) our protocols involve a very small fraction of the network on average."}],"month":"04","alternative_title":["LNCS"],"article_processing_charge":"No","title":"Route discovery in private payment channel networks","oa_version":"Submitted Version","_id":"19600","year":"2025","department":[{"_id":"KrPi"},{"_id":"KrCh"}],"date_created":"2025-04-20T22:01:28Z","OA_place":"repository","date_updated":"2025-11-05T07:52:35Z","publication_identifier":{"eissn":["1611-3349"],"isbn":["9783031823480"],"issn":["0302-9743"]},"quality_controlled":"1","language":[{"iso":"eng"}],"intvolume":"     15263","main_file_link":[{"url":"https://eprint.iacr.org/2021/1539","open_access":"1"}],"publication":"Computer Security. ESORICS 2024 International Workshops","type":"conference","ec_funded":1,"day":"01","publisher":"Springer Nature","doi":"10.1007/978-3-031-82349-7_15","page":"207-223","volume":15263,"citation":{"short":"Z. Avarikioti, M. Bastankhah, M.A. Maddah-Ali, K.Z. Pietrzak, J. Svoboda, M.X. Yeo, in:, Computer Security. ESORICS 2024 International Workshops, Springer Nature, 2025, pp. 207–223.","ista":"Avarikioti Z, Bastankhah M, Maddah-Ali MA, Pietrzak KZ, Svoboda J, Yeo MX. 2025. Route discovery in private payment channel networks. Computer Security. ESORICS 2024 International Workshops. ESORICS: European Symposium on Research in Computer Security, LNCS, vol. 15263, 207–223.","mla":"Avarikioti, Zeta, et al. “Route Discovery in Private Payment Channel Networks.” <i>Computer Security. ESORICS 2024 International Workshops</i>, vol. 15263, Springer Nature, 2025, pp. 207–23, doi:<a href=\"https://doi.org/10.1007/978-3-031-82349-7_15\">10.1007/978-3-031-82349-7_15</a>.","apa":"Avarikioti, Z., Bastankhah, M., Maddah-Ali, M. A., Pietrzak, K. Z., Svoboda, J., &#38; Yeo, M. X. (2025). Route discovery in private payment channel networks. In <i>Computer Security. ESORICS 2024 International Workshops</i> (Vol. 15263, pp. 207–223). Bydgoszcz, Poland: Springer Nature. <a href=\"https://doi.org/10.1007/978-3-031-82349-7_15\">https://doi.org/10.1007/978-3-031-82349-7_15</a>","ieee":"Z. Avarikioti, M. Bastankhah, M. A. Maddah-Ali, K. Z. Pietrzak, J. Svoboda, and M. X. Yeo, “Route discovery in private payment channel networks,” in <i>Computer Security. ESORICS 2024 International Workshops</i>, Bydgoszcz, Poland, 2025, vol. 15263, pp. 207–223.","ama":"Avarikioti Z, Bastankhah M, Maddah-Ali MA, Pietrzak KZ, Svoboda J, Yeo MX. Route discovery in private payment channel networks. In: <i>Computer Security. ESORICS 2024 International Workshops</i>. Vol 15263. Springer Nature; 2025:207-223. doi:<a href=\"https://doi.org/10.1007/978-3-031-82349-7_15\">10.1007/978-3-031-82349-7_15</a>","chicago":"Avarikioti, Zeta, Mahsa Bastankhah, Mohammad Ali Maddah-Ali, Krzysztof Z Pietrzak, Jakub Svoboda, and Michelle X Yeo. “Route Discovery in Private Payment Channel Networks.” In <i>Computer Security. ESORICS 2024 International Workshops</i>, 15263:207–23. Springer Nature, 2025. <a href=\"https://doi.org/10.1007/978-3-031-82349-7_15\">https://doi.org/10.1007/978-3-031-82349-7_15</a>."}},{"type":"journal_article","page":"717-724","day":"11","publisher":"Springer Nature","doi":"10.1038/s41477-025-01975-1","volume":11,"citation":{"short":"M. De Roij, J. Hernández García, S. Das, J.W. Borst, D. Weijers, Nature Plants 11 (2025) 717–724.","ieee":"M. De Roij, J. Hernández García, S. Das, J. W. Borst, and D. Weijers, “ARF degradation defines a deeply conserved step in auxin response,” <i>Nature Plants</i>, vol. 11. Springer Nature, pp. 717–724, 2025.","apa":"De Roij, M., Hernández García, J., Das, S., Borst, J. W., &#38; Weijers, D. (2025). ARF degradation defines a deeply conserved step in auxin response. <i>Nature Plants</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41477-025-01975-1\">https://doi.org/10.1038/s41477-025-01975-1</a>","mla":"De Roij, Martijn, et al. “ARF Degradation Defines a Deeply Conserved Step in Auxin Response.” <i>Nature Plants</i>, vol. 11, Springer Nature, 2025, pp. 717–24, doi:<a href=\"https://doi.org/10.1038/s41477-025-01975-1\">10.1038/s41477-025-01975-1</a>.","ista":"De Roij M, Hernández García J, Das S, Borst JW, Weijers D. 2025. ARF degradation defines a deeply conserved step in auxin response. Nature Plants. 11, 717–724.","ama":"De Roij M, Hernández García J, Das S, Borst JW, Weijers D. ARF degradation defines a deeply conserved step in auxin response. <i>Nature Plants</i>. 2025;11:717-724. doi:<a href=\"https://doi.org/10.1038/s41477-025-01975-1\">10.1038/s41477-025-01975-1</a>","chicago":"De Roij, Martijn, Jorge Hernández García, Shubhajit Das, Jan Willem Borst, and Dolf Weijers. “ARF Degradation Defines a Deeply Conserved Step in Auxin Response.” <i>Nature Plants</i>. Springer Nature, 2025. <a href=\"https://doi.org/10.1038/s41477-025-01975-1\">https://doi.org/10.1038/s41477-025-01975-1</a>."},"publication":"Nature Plants","external_id":{"pmid":["40216983"]},"date_updated":"2025-12-30T07:28:49Z","has_accepted_license":"1","OA_place":"publisher","publication_identifier":{"eissn":["2055-0278"]},"intvolume":"        11","quality_controlled":"1","language":[{"iso":"eng"}],"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"department":[{"_id":"JiFr"}],"file_date_updated":"2025-12-30T07:28:09Z","date_created":"2025-04-20T22:01:28Z","title":"ARF degradation defines a deeply conserved step in auxin response","oa_version":"Published Version","year":"2025","_id":"19601","month":"04","pmid":1,"article_processing_charge":"Yes (in subscription journal)","acknowledgement":"We thank S. Woudenberg, S. Valk and J. Rienstra for help and advice, A. Kuhn for comments on the paper and M. Prigge and M. Estelle for helpful discussions. This work was supported by a grant from Netherlands Organization for Scientific Research (NWO; OCENW.M20.031 to J.W.B.), a Marie Skłodowska-Curie Individual Fellowship (H2020-MSCA-IF-2020 contract number to J.H.G.) and a research grant from the Human Frontiers Research Program (HFSP; grant RGP0015/2022 to D.W.).","ddc":["580"],"OA_type":"hybrid","status":"public","scopus_import":"1","abstract":[{"text":"In land plants, the signalling molecule auxin profoundly controls growth and development, chiefly through a transcriptional response system. The auxin response is mediated by modulating the activity of DNA-binding auxin response factor (ARF) proteins. The concentrations and stoichiometry of the competing A- and B-class ARFs define cells’ capacity for auxin response. In the minimal auxin response system of the liverwort Marchantia polymorpha, both A- and B-ARFs are unstable, but the underlying mechanisms, developmental relevance and evolutionary history of this instability are unknown. Here we identify a minimal motif that is necessary for MpARF2 (B-class) degradation and show that it is critical for development and the auxin response. Through comparative analysis and motif swaps among all ARF classes in extant algae and land plants, we infer that the emergence of ARF instability probably occurred in the ancestor of the A- and B-ARF clades and, therefore, preceded or coincided with the origin of the auxin response system.","lang":"eng"}],"date_published":"2025-04-11T00:00:00Z","oa":1,"file":[{"access_level":"open_access","date_created":"2025-12-30T07:28:09Z","creator":"dernst","content_type":"application/pdf","file_size":7062474,"relation":"main_file","file_id":"20882","checksum":"8225c1899bb2f39f9a1707cc0697a052","success":1,"date_updated":"2025-12-30T07:28:09Z","file_name":"2025_NaturePlants_deRoij.pdf"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","author":[{"last_name":"De Roij","first_name":"Martijn","full_name":"De Roij, Martijn"},{"last_name":"Hernández García","first_name":"Jorge","full_name":"Hernández García, Jorge"},{"first_name":"Shubhajit","id":"b08969a4-f2a5-11ed-b6c4-ff0f10b7d0be","full_name":"Das, Shubhajit","last_name":"Das"},{"full_name":"Borst, Jan Willem","first_name":"Jan Willem","last_name":"Borst"},{"last_name":"Weijers","first_name":"Dolf","full_name":"Weijers, Dolf"}],"publication_status":"published","article_type":"letter_note"}]