[{"date_published":"2018-06-14T00:00:00Z","year":"2018","month":"06","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","related_material":{"record":[{"relation":"used_in_publication","status":"public","id":"162"}]},"date_updated":"2025-04-14T13:02:22Z","title":"Data from: Signals from the brain and olfactory epithelium control shaping of the mammalian nasal capsule cartilage","day":"14","article_processing_charge":"No","department":[{"_id":"AnKi"}],"oa_version":"Published Version","citation":{"ama":"Kaucka M, Petersen J, Tesarova M, et al. Data from: Signals from the brain and olfactory epithelium control shaping of the mammalian nasal capsule cartilage. 2018. doi:<a href=\"https://doi.org/10.5061/dryad.f1s76f2\">10.5061/dryad.f1s76f2</a>","chicago":"Kaucka, Marketa, Julian Petersen, Marketa Tesarova, Bara Szarowska, Maria Eleni Kastriti, Meng Xie, Anna Kicheva, et al. “Data from: Signals from the Brain and Olfactory Epithelium Control Shaping of the Mammalian Nasal Capsule Cartilage.” Dryad, 2018. <a href=\"https://doi.org/10.5061/dryad.f1s76f2\">https://doi.org/10.5061/dryad.f1s76f2</a>.","ieee":"M. Kaucka <i>et al.</i>, “Data from: Signals from the brain and olfactory epithelium control shaping of the mammalian nasal capsule cartilage.” Dryad, 2018.","mla":"Kaucka, Marketa, et al. <i>Data from: Signals from the Brain and Olfactory Epithelium Control Shaping of the Mammalian Nasal Capsule Cartilage</i>. Dryad, 2018, doi:<a href=\"https://doi.org/10.5061/dryad.f1s76f2\">10.5061/dryad.f1s76f2</a>.","apa":"Kaucka, M., Petersen, J., Tesarova, M., Szarowska, B., Kastriti, M. E., Xie, M., … Adameyko, I. (2018). Data from: Signals from the brain and olfactory epithelium control shaping of the mammalian nasal capsule cartilage. Dryad. <a href=\"https://doi.org/10.5061/dryad.f1s76f2\">https://doi.org/10.5061/dryad.f1s76f2</a>","ista":"Kaucka M, Petersen J, Tesarova M, Szarowska B, Kastriti ME, Xie M, Kicheva A, Annusver K, Kasper M, Symmons O, Pan L, Spitz F, Kaiser J, Hovorakova M, Zikmund T, Sunadome K, Matise MP, Wang H, Marklund U, Abdo H, Ernfors P, Maire P, Wurmser M, Chagin AS, Fried K, Adameyko I. 2018. Data from: Signals from the brain and olfactory epithelium control shaping of the mammalian nasal capsule cartilage, Dryad, <a href=\"https://doi.org/10.5061/dryad.f1s76f2\">10.5061/dryad.f1s76f2</a>.","short":"M. Kaucka, J. Petersen, M. Tesarova, B. Szarowska, M.E. Kastriti, M. Xie, A. Kicheva, K. Annusver, M. Kasper, O. Symmons, L. Pan, F. Spitz, J. Kaiser, M. Hovorakova, T. Zikmund, K. Sunadome, M.P. Matise, H. Wang, U. Marklund, H. Abdo, P. Ernfors, P. Maire, M. Wurmser, A.S. Chagin, K. Fried, I. Adameyko, (2018)."},"abstract":[{"lang":"eng","text":"Facial shape is the basis for facial recognition and categorization. Facial features reflect the underlying geometry of the skeletal structures. Here we reveal that cartilaginous nasal capsule (corresponding to upper jaw and face) is shaped by signals generated by neural structures: brain and olfactory epithelium. Brain-derived Sonic Hedgehog (SHH) enables the induction of nasal septum and posterior nasal capsule, whereas the formation of a capsule roof is controlled by signals from the olfactory epithelium. Unexpectedly, the cartilage of the nasal capsule turned out to be important for shaping membranous facial bones during development. This suggests that conserved neurosensory structures could benefit from protection and have evolved signals inducing cranial cartilages encasing them. Experiments with mutant mice revealed that the genomic regulatory regions controlling production of SHH in the nervous system contribute to facial cartilage morphogenesis, which might be a mechanism responsible for the adaptive evolution of animal faces and snouts."}],"type":"research_data_reference","status":"public","doi":"10.5061/dryad.f1s76f2","oa":1,"fulldoi":"https://doi.org/10.5061/dryad.f1s76f2","author":[{"first_name":"Marketa","last_name":"Kaucka","full_name":"Kaucka, Marketa"},{"last_name":"Petersen","first_name":"Julian","full_name":"Petersen, Julian"},{"last_name":"Tesarova","first_name":"Marketa","full_name":"Tesarova, Marketa"},{"full_name":"Szarowska, Bara","last_name":"Szarowska","first_name":"Bara"},{"last_name":"Kastriti","first_name":"Maria Eleni","full_name":"Kastriti, Maria Eleni"},{"last_name":"Xie","first_name":"Meng","full_name":"Xie, Meng"},{"orcid":"0000-0003-4509-4998","last_name":"Kicheva","id":"3959A2A0-F248-11E8-B48F-1D18A9856A87","first_name":"Anna","full_name":"Kicheva, Anna"},{"full_name":"Annusver, Karl","first_name":"Karl","last_name":"Annusver"},{"first_name":"Maria","last_name":"Kasper","full_name":"Kasper, Maria"},{"first_name":"Orsolya","last_name":"Symmons","full_name":"Symmons, Orsolya"},{"full_name":"Pan, Leslie","last_name":"Pan","first_name":"Leslie"},{"first_name":"Francois","last_name":"Spitz","full_name":"Spitz, Francois"},{"full_name":"Kaiser, Jozef","first_name":"Jozef","last_name":"Kaiser"},{"last_name":"Hovorakova","first_name":"Maria","full_name":"Hovorakova, Maria"},{"first_name":"Tomas","last_name":"Zikmund","full_name":"Zikmund, Tomas"},{"full_name":"Sunadome, Kazunori","first_name":"Kazunori","last_name":"Sunadome"},{"full_name":"Matise, Michael P","last_name":"Matise","first_name":"Michael P"},{"full_name":"Wang, Hui","first_name":"Hui","last_name":"Wang"},{"full_name":"Marklund, Ulrika","first_name":"Ulrika","last_name":"Marklund"},{"full_name":"Abdo, Hind","first_name":"Hind","last_name":"Abdo"},{"last_name":"Ernfors","first_name":"Patrik","full_name":"Ernfors, Patrik"},{"first_name":"Pascal","last_name":"Maire","full_name":"Maire, Pascal"},{"first_name":"Maud","last_name":"Wurmser","full_name":"Wurmser, Maud"},{"last_name":"Chagin","first_name":"Andrei S","full_name":"Chagin, Andrei S"},{"full_name":"Fried, Kaj","last_name":"Fried","first_name":"Kaj"},{"full_name":"Adameyko, Igor","last_name":"Adameyko","first_name":"Igor"}],"publisher":"Dryad","date_created":"2021-08-09T12:54:35Z","_id":"9838","main_file_link":[{"open_access":"1","url":"https://doi.org/10.5061/dryad.f1s76f2"}]},{"related_material":{"record":[{"status":"public","id":"423","relation":"used_in_publication"}]},"user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","month":"03","year":"2018","date_published":"2018-03-12T00:00:00Z","abstract":[{"text":"Herd immunity, a process in which resistant individuals limit the spread of a pathogen among susceptible hosts has been extensively studied in eukaryotes. Even though bacteria have evolved multiple immune systems against their phage pathogens, herd immunity in bacteria remains unexplored. Here we experimentally demonstrate that herd immunity arises during phage epidemics in structured and unstructured Escherichia coli populations consisting of differing frequencies of susceptible and resistant cells harboring CRISPR immunity. In addition, we develop a mathematical model that quantifies how herd immunity is affected by spatial population structure, bacterial growth rate, and phage replication rate. Using our model we infer a general epidemiological rule describing the relative speed of an epidemic in partially resistant spatially structured populations. Our experimental and theoretical findings indicate that herd immunity may be important in bacterial communities, allowing for stable coexistence of bacteria and their phages and the maintenance of polymorphism in bacterial immunity.","lang":"eng"}],"citation":{"ama":"Payne P, Geyrhofer L, Barton NH, Bollback JP. Data from: CRISPR-based herd immunity limits phage epidemics in bacterial populations. 2018. doi:<a href=\"https://doi.org/10.5061/dryad.42n44\">10.5061/dryad.42n44</a>","chicago":"Payne, Pavel, Lukas Geyrhofer, Nicholas H Barton, and Jonathan P Bollback. “Data from: CRISPR-Based Herd Immunity Limits Phage Epidemics in Bacterial Populations.” Dryad, 2018. <a href=\"https://doi.org/10.5061/dryad.42n44\">https://doi.org/10.5061/dryad.42n44</a>.","short":"P. Payne, L. Geyrhofer, N.H. Barton, J.P. Bollback, (2018).","ista":"Payne P, Geyrhofer L, Barton NH, Bollback JP. 2018. Data from: CRISPR-based herd immunity limits phage epidemics in bacterial populations, Dryad, <a href=\"https://doi.org/10.5061/dryad.42n44\">10.5061/dryad.42n44</a>.","mla":"Payne, Pavel, et al. <i>Data from: CRISPR-Based Herd Immunity Limits Phage Epidemics in Bacterial Populations</i>. Dryad, 2018, doi:<a href=\"https://doi.org/10.5061/dryad.42n44\">10.5061/dryad.42n44</a>.","apa":"Payne, P., Geyrhofer, L., Barton, N. H., &#38; Bollback, J. P. (2018). Data from: CRISPR-based herd immunity limits phage epidemics in bacterial populations. Dryad. <a href=\"https://doi.org/10.5061/dryad.42n44\">https://doi.org/10.5061/dryad.42n44</a>","ieee":"P. Payne, L. Geyrhofer, N. H. Barton, and J. P. Bollback, “Data from: CRISPR-based herd immunity limits phage epidemics in bacterial populations.” Dryad, 2018."},"oa_version":"Published Version","day":"12","article_processing_charge":"No","department":[{"_id":"NiBa"},{"_id":"JoBo"}],"title":"Data from: CRISPR-based herd immunity limits phage epidemics in bacterial populations","date_updated":"2025-04-15T08:17:50Z","oa":1,"doi":"10.5061/dryad.42n44","status":"public","type":"research_data_reference","main_file_link":[{"open_access":"1","url":"https://doi.org/10.5061/dryad.42n44"}],"_id":"9840","date_created":"2021-08-09T13:10:02Z","publisher":"Dryad","author":[{"full_name":"Payne, Pavel","last_name":"Payne","orcid":"0000-0002-2711-9453","id":"35F78294-F248-11E8-B48F-1D18A9856A87","first_name":"Pavel"},{"first_name":"Lukas","last_name":"Geyrhofer","full_name":"Geyrhofer, Lukas"},{"orcid":"0000-0002-8548-5240","last_name":"Barton","first_name":"Nicholas H","id":"4880FE40-F248-11E8-B48F-1D18A9856A87","full_name":"Barton, Nicholas H"},{"last_name":"Bollback","orcid":"0000-0002-4624-4612","id":"2C6FA9CC-F248-11E8-B48F-1D18A9856A87","first_name":"Jonathan P","full_name":"Bollback, Jonathan P"}],"fulldoi":"https://doi.org/10.5061/dryad.42n44"},{"date_updated":"2023-09-11T14:10:56Z","title":"Data from: Hemimetabolous genomes reveal molecular basis of termite eusociality","department":[{"_id":"BeVi"}],"article_processing_charge":"No","day":"12","oa_version":"Published Version","citation":{"chicago":"Harrison, Mark C., Evelien Jongepier, Hugh M. Robertson, Nicolas Arning, Tristan Bitard-Feildel, Hsu Chao, Christopher P. Childers, et al. “Data from: Hemimetabolous Genomes Reveal Molecular Basis of Termite Eusociality.” Dryad, 2018. <a href=\"https://doi.org/10.5061/dryad.51d4r\">https://doi.org/10.5061/dryad.51d4r</a>.","ama":"Harrison MC, Jongepier E, Robertson HM, et al. Data from: Hemimetabolous genomes reveal molecular basis of termite eusociality. 2018. doi:<a href=\"https://doi.org/10.5061/dryad.51d4r\">10.5061/dryad.51d4r</a>","ieee":"M. C. Harrison <i>et al.</i>, “Data from: Hemimetabolous genomes reveal molecular basis of termite eusociality.” Dryad, 2018.","short":"M.C. Harrison, E. Jongepier, H.M. Robertson, N. Arning, T. Bitard-Feildel, H. Chao, C.P. Childers, H. Dinh, H. Doddapaneni, S. Dugan, J. Gowin, C. Greiner, Y. Han, H. Hu, D.S.T. Hughes, A.K. Huylmans, C. Kemena, L.P.M. Kremer, S.L. Lee, A. Lopez-Ezquerra, L. Mallet, J.M. Monroy-Kuhn, A. Moser, S.C. Murali, D.M. Muzny, S. Otani, M.-D. Piulachs, M. Poelchau, J. Qu, F. Schaub, A. Wada-Katsumata, K.C. Worley, Q. Xie, G. Ylla, M. Poulsen, R.A. Gibbs, C. Schal, S. Richards, X. Belles, J. Korb, E. Bornberg-Bauer, (2018).","apa":"Harrison, M. C., Jongepier, E., Robertson, H. M., Arning, N., Bitard-Feildel, T., Chao, H., … Bornberg-Bauer, E. (2018). Data from: Hemimetabolous genomes reveal molecular basis of termite eusociality. Dryad. <a href=\"https://doi.org/10.5061/dryad.51d4r\">https://doi.org/10.5061/dryad.51d4r</a>","mla":"Harrison, Mark C., et al. <i>Data from: Hemimetabolous Genomes Reveal Molecular Basis of Termite Eusociality</i>. Dryad, 2018, doi:<a href=\"https://doi.org/10.5061/dryad.51d4r\">10.5061/dryad.51d4r</a>.","ista":"Harrison MC, Jongepier E, Robertson HM, Arning N, Bitard-Feildel T, Chao H, Childers CP, Dinh H, Doddapaneni H, Dugan S, Gowin J, Greiner C, Han Y, Hu H, Hughes DST, Huylmans AK, Kemena C, Kremer LPM, Lee SL, Lopez-Ezquerra A, Mallet L, Monroy-Kuhn JM, Moser A, Murali SC, Muzny DM, Otani S, Piulachs M-D, Poelchau M, Qu J, Schaub F, Wada-Katsumata A, Worley KC, Xie Q, Ylla G, Poulsen M, Gibbs RA, Schal C, Richards S, Belles X, Korb J, Bornberg-Bauer E. 2018. Data from: Hemimetabolous genomes reveal molecular basis of termite eusociality, Dryad, <a href=\"https://doi.org/10.5061/dryad.51d4r\">10.5061/dryad.51d4r</a>."},"abstract":[{"text":"Around 150 million years ago, eusocial termites evolved from within the cockroaches, 50 million years before eusocial Hymenoptera, such as bees and ants, appeared. Here, we report the 2-Gb genome of the German cockroach, Blattella germanica, and the 1.3-Gb genome of the drywood termite Cryptotermes secundus. We show evolutionary signatures of termite eusociality by comparing the genomes and transcriptomes of three termites and the cockroach against the background of 16 other eusocial and non-eusocial insects. Dramatic adaptive changes in genes underlying the production and perception of pheromones confirm the importance of chemical communication in the termites. These are accompanied by major changes in gene regulation and the molecular evolution of caste determination. Many of these results parallel molecular mechanisms of eusocial evolution in Hymenoptera. However, the specific solutions are remarkably different, thus revealing a striking case of convergence in one of the major evolutionary transitions in biological complexity.","lang":"eng"}],"date_published":"2018-12-12T00:00:00Z","year":"2018","month":"12","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","related_material":{"record":[{"relation":"used_in_publication","id":"448","status":"public"}]},"fulldoi":"https://doi.org/10.5061/dryad.51d4r","author":[{"full_name":"Harrison, Mark C.","first_name":"Mark C.","last_name":"Harrison"},{"last_name":"Jongepier","first_name":"Evelien","full_name":"Jongepier, Evelien"},{"full_name":"Robertson, Hugh M.","last_name":"Robertson","first_name":"Hugh M."},{"first_name":"Nicolas","last_name":"Arning","full_name":"Arning, Nicolas"},{"last_name":"Bitard-Feildel","first_name":"Tristan","full_name":"Bitard-Feildel, Tristan"},{"first_name":"Hsu","last_name":"Chao","full_name":"Chao, Hsu"},{"full_name":"Childers, Christopher P.","last_name":"Childers","first_name":"Christopher P."},{"last_name":"Dinh","first_name":"Huyen","full_name":"Dinh, Huyen"},{"full_name":"Doddapaneni, Harshavardhan","last_name":"Doddapaneni","first_name":"Harshavardhan"},{"last_name":"Dugan","first_name":"Shannon","full_name":"Dugan, Shannon"},{"full_name":"Gowin, Johannes","last_name":"Gowin","first_name":"Johannes"},{"first_name":"Carolin","last_name":"Greiner","full_name":"Greiner, Carolin"},{"last_name":"Han","first_name":"Yi","full_name":"Han, Yi"},{"last_name":"Hu","first_name":"Haofu","full_name":"Hu, Haofu"},{"first_name":"Daniel S. T.","last_name":"Hughes","full_name":"Hughes, Daniel S. T."},{"last_name":"Huylmans","orcid":"0000-0001-8871-4961","id":"4C0A3874-F248-11E8-B48F-1D18A9856A87","first_name":"Ann K","full_name":"Huylmans, Ann K"},{"first_name":"Carsten","last_name":"Kemena","full_name":"Kemena, Carsten"},{"first_name":"Lukas P. M.","last_name":"Kremer","full_name":"Kremer, Lukas P. M."},{"full_name":"Lee, Sandra L.","first_name":"Sandra L.","last_name":"Lee"},{"last_name":"Lopez-Ezquerra","first_name":"Alberto","full_name":"Lopez-Ezquerra, Alberto"},{"full_name":"Mallet, Ludovic","first_name":"Ludovic","last_name":"Mallet"},{"last_name":"Monroy-Kuhn","first_name":"Jose M.","full_name":"Monroy-Kuhn, Jose M."},{"first_name":"Annabell","last_name":"Moser","full_name":"Moser, Annabell"},{"full_name":"Murali, Shwetha C.","first_name":"Shwetha C.","last_name":"Murali"},{"last_name":"Muzny","first_name":"Donna M.","full_name":"Muzny, Donna M."},{"last_name":"Otani","first_name":"Saria","full_name":"Otani, Saria"},{"first_name":"Maria-Dolors","last_name":"Piulachs","full_name":"Piulachs, Maria-Dolors"},{"first_name":"Monica","last_name":"Poelchau","full_name":"Poelchau, Monica"},{"last_name":"Qu","first_name":"Jiaxin","full_name":"Qu, Jiaxin"},{"last_name":"Schaub","first_name":"Florentine","full_name":"Schaub, Florentine"},{"first_name":"Ayako","last_name":"Wada-Katsumata","full_name":"Wada-Katsumata, Ayako"},{"full_name":"Worley, Kim C.","last_name":"Worley","first_name":"Kim C."},{"full_name":"Xie, Qiaolin","last_name":"Xie","first_name":"Qiaolin"},{"full_name":"Ylla, Guillem","last_name":"Ylla","first_name":"Guillem"},{"full_name":"Poulsen, Michael","first_name":"Michael","last_name":"Poulsen"},{"full_name":"Gibbs, Richard A.","first_name":"Richard A.","last_name":"Gibbs"},{"full_name":"Schal, Coby","first_name":"Coby","last_name":"Schal"},{"last_name":"Richards","first_name":"Stephen","full_name":"Richards, Stephen"},{"last_name":"Belles","first_name":"Xavier","full_name":"Belles, Xavier"},{"last_name":"Korb","first_name":"Judith","full_name":"Korb, Judith"},{"full_name":"Bornberg-Bauer, Erich","first_name":"Erich","last_name":"Bornberg-Bauer"}],"publisher":"Dryad","date_created":"2021-08-09T13:13:48Z","_id":"9841","main_file_link":[{"open_access":"1","url":"https://doi.org/10.5061/dryad.51d4r"}],"type":"research_data_reference","status":"public","doi":"10.5061/dryad.51d4r","oa":1},{"has_accepted_license":"1","conference":{"end_date":"2018-09-26","location":"Graz, Austria","start_date":"2018-09-24","name":"OAT: Open Access Tage"},"oa":1,"status":"public","doi":"10.5281/zenodo.1410279","file_date_updated":"2020-07-14T12:47:30Z","type":"conference_poster","_id":"6459","date_created":"2019-05-16T07:27:14Z","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"publisher":"IST Austria","author":[{"orcid":"0000-0003-2724-4614","last_name":"Petritsch","id":"406048EC-F248-11E8-B48F-1D18A9856A87","first_name":"Barbara","full_name":"Petritsch, Barbara"}],"ddc":["020"],"fulldoi":"https://doi.org/10.5281/zenodo.1410279","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","keyword":["Open Access","Publication Analysis"],"month":"09","year":"2018","date_published":"2018-09-24T00:00:00Z","publication_status":"published","file":[{"relation":"main_file","file_size":1967778,"date_created":"2019-05-16T07:26:25Z","file_id":"6460","content_type":"application/pdf","checksum":"9063ab4d10ea93353c3a03bbf53fbcf1","creator":"dernst","file_name":"Poster_Beitrag_125_Petritsch.pdf","date_updated":"2020-07-14T12:47:30Z","access_level":"open_access"}],"citation":{"ama":"Petritsch B. <i>Open Access at IST Austria 2009-2017</i>. IST Austria; 2018. doi:<a href=\"https://doi.org/10.5281/zenodo.1410279\">10.5281/zenodo.1410279</a>","chicago":"Petritsch, Barbara. <i>Open Access at IST Austria 2009-2017</i>. IST Austria, 2018. <a href=\"https://doi.org/10.5281/zenodo.1410279\">https://doi.org/10.5281/zenodo.1410279</a>.","ieee":"B. Petritsch, <i>Open Access at IST Austria 2009-2017</i>. IST Austria, 2018.","apa":"Petritsch, B. (2018). <i>Open Access at IST Austria 2009-2017</i>. Presented at the OAT: Open Access Tage, Graz, Austria: IST Austria. <a href=\"https://doi.org/10.5281/zenodo.1410279\">https://doi.org/10.5281/zenodo.1410279</a>","mla":"Petritsch, Barbara. <i>Open Access at IST Austria 2009-2017</i>. IST Austria, 2018, doi:<a href=\"https://doi.org/10.5281/zenodo.1410279\">10.5281/zenodo.1410279</a>.","ista":"Petritsch B. 2018. Open Access at IST Austria 2009-2017, IST Austria,p.","short":"B. Petritsch, Open Access at IST Austria 2009-2017, IST Austria, 2018."},"oa_version":"Published Version","language":[{"iso":"eng"}],"department":[{"_id":"E-Lib"}],"day":"24","article_processing_charge":"No","title":"Open Access at IST Austria 2009-2017","date_updated":"2026-03-31T12:35:03Z"},{"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","month":"06","publication_status":"published","date_published":"2018-06-06T00:00:00Z","citation":{"ista":"Moalli F, Ficht X, Germann P, Vladymyrov M, Stolp B, de Vries I, Lyck R, Balmer J, Fiocchi A, Kreutzfeldt M, Merkler D, Iannacone M, Ariga A, Stoffel MH, Sharpe J, Bähler M, Sixt MK, Diz-Muñoz A, Stein JV. 2018. The Rho regulator Myosin IXb enables nonlymphoid tissue seeding of protective CD8+T cells. The Journal of Experimental Medicine. 2015(7), 1869–1890.","mla":"Moalli, Federica, et al. “The Rho Regulator Myosin IXb Enables Nonlymphoid Tissue Seeding of Protective CD8+T Cells.” <i>The Journal of Experimental Medicine</i>, vol. 2015, no. 7, Rockefeller University Press, 2018, pp. 1869–1890, doi:<a href=\"https://doi.org/10.1084/jem.20170896\">10.1084/jem.20170896</a>.","apa":"Moalli, F., Ficht, X., Germann, P., Vladymyrov, M., Stolp, B., de Vries, I., … Stein, J. V. (2018). The Rho regulator Myosin IXb enables nonlymphoid tissue seeding of protective CD8+T cells. <i>The Journal of Experimental Medicine</i>. Rockefeller University Press. <a href=\"https://doi.org/10.1084/jem.20170896\">https://doi.org/10.1084/jem.20170896</a>","short":"F. Moalli, X. Ficht, P. Germann, M. Vladymyrov, B. Stolp, I. de Vries, R. Lyck, J. Balmer, A. Fiocchi, M. Kreutzfeldt, D. Merkler, M. Iannacone, A. Ariga, M.H. Stoffel, J. Sharpe, M. Bähler, M.K. Sixt, A. Diz-Muñoz, J.V. Stein, The Journal of Experimental Medicine 2015 (2018) 1869–1890.","ieee":"F. Moalli <i>et al.</i>, “The Rho regulator Myosin IXb enables nonlymphoid tissue seeding of protective CD8+T cells,” <i>The Journal of Experimental Medicine</i>, vol. 2015, no. 7. Rockefeller University Press, pp. 1869–1890, 2018.","chicago":"Moalli, Federica, Xenia Ficht, Philipp Germann, Mykhailo Vladymyrov, Bettina Stolp, Ingrid de Vries, Ruth Lyck, et al. “The Rho Regulator Myosin IXb Enables Nonlymphoid Tissue Seeding of Protective CD8+T Cells.” <i>The Journal of Experimental Medicine</i>. Rockefeller University Press, 2018. <a href=\"https://doi.org/10.1084/jem.20170896\">https://doi.org/10.1084/jem.20170896</a>.","ama":"Moalli F, Ficht X, Germann P, et al. The Rho regulator Myosin IXb enables nonlymphoid tissue seeding of protective CD8+T cells. <i>The Journal of Experimental Medicine</i>. 2018;2015(7):1869–1890. doi:<a href=\"https://doi.org/10.1084/jem.20170896\">10.1084/jem.20170896</a>"},"volume":2015,"department":[{"_id":"MiSi"}],"article_processing_charge":"No","has_accepted_license":"1","oa":1,"_id":"6497","publication_identifier":{"eissn":["1540-9538"],"issn":["0022-1007"]},"publication":"The Journal of Experimental Medicine","publisher":"Rockefeller University Press","scopus_import":"1","fulldoi":"https://doi.org/10.1084/jem.20170896","quality_controlled":"1","license":"https://creativecommons.org/licenses/by-nc-sa/4.0/","page":"1869–1890","isi":1,"year":"2018","external_id":{"isi":["000440822900011"]},"file":[{"file_id":"6498","creator":"kschuh","content_type":"application/pdf","checksum":"86ae5331f9bfced9a6358a790a04bef4","date_created":"2019-05-28T12:40:05Z","date_updated":"2020-07-14T12:47:32Z","file_name":"2018_rupress_Moalli.pdf","access_level":"open_access","relation":"main_file","file_size":3841660}],"abstract":[{"lang":"eng","text":"T cells are actively scanning pMHC-presenting cells in lymphoid organs and nonlymphoid tissues (NLTs) with divergent topologies and confinement. How the T cell actomyosin cytoskeleton facilitates this task in distinct environments is incompletely understood. Here, we show that lack of Myosin IXb (Myo9b), a negative regulator of the small GTPase Rho, led to increased Rho-GTP levels and cell surface stiffness in primary T cells. Nonetheless, intravital imaging revealed robust motility of Myo9b−/− CD8+ T cells in lymphoid tissue and similar expansion and differentiation during immune responses. In contrast, accumulation of Myo9b−/− CD8+ T cells in NLTs was strongly impaired. Specifically, Myo9b was required for T cell crossing of basement membranes, such as those which are present between dermis and epidermis. As consequence, Myo9b−/− CD8+ T cells showed impaired control of skin infections. In sum, we show that Myo9b is critical for the CD8+ T cell adaptation from lymphoid to NLT surveillance and the establishment of protective tissue–resident T cell populations."}],"intvolume":"      2015","language":[{"iso":"eng"}],"oa_version":"Published Version","date_updated":"2023-09-19T14:52:08Z","title":"The Rho regulator Myosin IXb enables nonlymphoid tissue seeding of protective CD8+T cells","day":"06","status":"public","file_date_updated":"2020-07-14T12:47:32Z","doi":"10.1084/jem.20170896","type":"journal_article","issue":"7","date_created":"2019-05-28T12:36:47Z","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode","name":"Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)","image":"/images/cc_by_nc_sa.png","short":"CC BY-NC-SA (4.0)"},"ddc":["570"],"author":[{"full_name":"Moalli, Federica","first_name":"Federica","last_name":"Moalli"},{"full_name":"Ficht, Xenia","last_name":"Ficht","first_name":"Xenia"},{"last_name":"Germann","first_name":"Philipp","full_name":"Germann, Philipp"},{"full_name":"Vladymyrov, Mykhailo","first_name":"Mykhailo","last_name":"Vladymyrov"},{"full_name":"Stolp, Bettina","last_name":"Stolp","first_name":"Bettina"},{"full_name":"de Vries, Ingrid","id":"4C7D837E-F248-11E8-B48F-1D18A9856A87","first_name":"Ingrid","last_name":"de Vries"},{"full_name":"Lyck, Ruth","first_name":"Ruth","last_name":"Lyck"},{"full_name":"Balmer, Jasmin","last_name":"Balmer","first_name":"Jasmin"},{"full_name":"Fiocchi, Amleto","last_name":"Fiocchi","first_name":"Amleto"},{"full_name":"Kreutzfeldt, Mario","first_name":"Mario","last_name":"Kreutzfeldt"},{"full_name":"Merkler, Doron","last_name":"Merkler","first_name":"Doron"},{"first_name":"Matteo","last_name":"Iannacone","full_name":"Iannacone, Matteo"},{"full_name":"Ariga, Akitaka","last_name":"Ariga","first_name":"Akitaka"},{"full_name":"Stoffel, Michael H.","first_name":"Michael H.","last_name":"Stoffel"},{"full_name":"Sharpe, James","last_name":"Sharpe","first_name":"James"},{"first_name":"Martin","last_name":"Bähler","full_name":"Bähler, Martin"},{"full_name":"Sixt, Michael K","id":"41E9FBEA-F248-11E8-B48F-1D18A9856A87","first_name":"Michael K","orcid":"0000-0002-6620-9179","last_name":"Sixt"},{"full_name":"Diz-Muñoz, Alba","first_name":"Alba","last_name":"Diz-Muñoz"},{"last_name":"Stein","first_name":"Jens V.","full_name":"Stein, Jens V."}]},{"department":[{"_id":"JoDa"}],"article_processing_charge":"No","citation":{"short":"S.M. Truckenbrodt, M. Maidorn, D. Crzan, H. Wildhagen, S. Kabatas, S.O. Rizzoli, EMBO Reports 19 (2018).","mla":"Truckenbrodt, Sven M., et al. “X10 Expansion Microscopy Enables 25‐nm Resolution on Conventional Microscopes.” <i>EMBO Reports</i>, vol. 19, no. 9, e45836, Embo Press, 2018, doi:<a href=\"https://doi.org/10.15252/embr.201845836\">10.15252/embr.201845836</a>.","ista":"Truckenbrodt SM, Maidorn M, Crzan D, Wildhagen H, Kabatas S, Rizzoli SO. 2018. X10 expansion microscopy enables 25‐nm resolution on conventional microscopes. EMBO reports. 19(9), e45836.","apa":"Truckenbrodt, S. M., Maidorn, M., Crzan, D., Wildhagen, H., Kabatas, S., &#38; Rizzoli, S. O. (2018). X10 expansion microscopy enables 25‐nm resolution on conventional microscopes. <i>EMBO Reports</i>. Embo Press. <a href=\"https://doi.org/10.15252/embr.201845836\">https://doi.org/10.15252/embr.201845836</a>","ieee":"S. M. Truckenbrodt, M. Maidorn, D. Crzan, H. Wildhagen, S. Kabatas, and S. O. Rizzoli, “X10 expansion microscopy enables 25‐nm resolution on conventional microscopes,” <i>EMBO reports</i>, vol. 19, no. 9. Embo Press, 2018.","chicago":"Truckenbrodt, Sven M, Manuel Maidorn, Dagmar Crzan, Hanna Wildhagen, Selda Kabatas, and Silvio O Rizzoli. “X10 Expansion Microscopy Enables 25‐nm Resolution on Conventional Microscopes.” <i>EMBO Reports</i>. Embo Press, 2018. <a href=\"https://doi.org/10.15252/embr.201845836\">https://doi.org/10.15252/embr.201845836</a>.","ama":"Truckenbrodt SM, Maidorn M, Crzan D, Wildhagen H, Kabatas S, Rizzoli SO. X10 expansion microscopy enables 25‐nm resolution on conventional microscopes. <i>EMBO reports</i>. 2018;19(9). doi:<a href=\"https://doi.org/10.15252/embr.201845836\">10.15252/embr.201845836</a>"},"volume":19,"month":"09","publication_status":"published","date_published":"2018-09-01T00:00:00Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","scopus_import":"1","publisher":"Embo Press","fulldoi":"https://doi.org/10.15252/embr.201845836","publication_identifier":{"issn":["1469-221X"],"eissn":["1469-3178"]},"_id":"6499","publication":"EMBO reports","has_accepted_license":"1","oa":1,"language":[{"iso":"eng"}],"oa_version":"Published Version","title":"X10 expansion microscopy enables 25‐nm resolution on conventional microscopes","date_updated":"2024-12-11T11:48:40Z","day":"01","file":[{"access_level":"open_access","file_name":"2018_embo_Truckenbrodt.pdf","date_updated":"2020-07-14T12:47:32Z","date_created":"2019-05-28T13:17:19Z","content_type":"application/pdf","creator":"kschuh","checksum":"6ec90abc637f09cca3a7b6424d7e7a26","file_id":"6500","file_size":2005572,"relation":"main_file"}],"abstract":[{"lang":"eng","text":"Expansion microscopy is a recently introduced imaging technique that achieves super‐resolution through physically expanding the specimen by ~4×, after embedding into a swellable gel. The resolution attained is, correspondingly, approximately fourfold better than the diffraction limit, or ~70 nm. This is a major improvement over conventional microscopy, but still lags behind modern STED or STORM setups, whose resolution can reach 20–30 nm. We addressed this issue here by introducing an improved gel recipe that enables an expansion factor of ~10× in each dimension, which corresponds to an expansion of the sample volume by more than 1,000‐fold. Our protocol, which we termed X10 microscopy, achieves a resolution of 25–30 nm on conventional epifluorescence microscopes. X10 provides multi‐color images similar or even superior to those produced with more challenging methods, such as STED, STORM, and iterative expansion microscopy (iExM). X10 is therefore the cheapest and easiest option for high‐quality super‐resolution imaging currently available. X10 should be usable in any laboratory, irrespective of the machinery owned or of the technical knowledge."}],"article_number":"e45836","intvolume":"        19","year":"2018","external_id":{"isi":["000443682200009"]},"quality_controlled":"1","isi":1,"tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"ddc":["580"],"author":[{"full_name":"Truckenbrodt, Sven M","id":"45812BD4-F248-11E8-B48F-1D18A9856A87","first_name":"Sven M","last_name":"Truckenbrodt"},{"full_name":"Maidorn, Manuel","last_name":"Maidorn","first_name":"Manuel"},{"full_name":"Crzan, Dagmar","first_name":"Dagmar","last_name":"Crzan"},{"first_name":"Hanna","last_name":"Wildhagen","full_name":"Wildhagen, Hanna"},{"last_name":"Kabatas","first_name":"Selda","full_name":"Kabatas, Selda"},{"last_name":"Rizzoli","first_name":"Silvio O","full_name":"Rizzoli, Silvio O"}],"issue":"9","date_created":"2019-05-28T13:16:08Z","status":"public","doi":"10.15252/embr.201845836","file_date_updated":"2020-07-14T12:47:32Z","type":"journal_article"},{"citation":{"ieee":"T. Hausel, A. Mellit, and D. Pei, “Mirror symmetry with branes by equivariant verlinde formulas,” in <i>Geometry and Physics: Volume I</i>, Oxford University Press, 2018, pp. 189–218.","short":"T. Hausel, A. Mellit, D. Pei, in:, Geometry and Physics: Volume I, Oxford University Press, 2018, pp. 189–218.","ista":"Hausel T, Mellit A, Pei D. 2018.Mirror symmetry with branes by equivariant verlinde formulas. In: Geometry and Physics: Volume I. , 189–218.","mla":"Hausel, Tamás, et al. “Mirror Symmetry with Branes by Equivariant Verlinde Formulas.” <i>Geometry and Physics: Volume I</i>, Oxford University Press, 2018, pp. 189–218, doi:<a href=\"https://doi.org/10.1093/oso/9780198802013.003.0009\">10.1093/oso/9780198802013.003.0009</a>.","apa":"Hausel, T., Mellit, A., &#38; Pei, D. (2018). Mirror symmetry with branes by equivariant verlinde formulas. In <i>Geometry and Physics: Volume I</i> (pp. 189–218). Oxford University Press. <a href=\"https://doi.org/10.1093/oso/9780198802013.003.0009\">https://doi.org/10.1093/oso/9780198802013.003.0009</a>","chicago":"Hausel, Tamás, Anton Mellit, and Du Pei. “Mirror Symmetry with Branes by Equivariant Verlinde Formulas.” In <i>Geometry and Physics: Volume I</i>, 189–218. Oxford University Press, 2018. <a href=\"https://doi.org/10.1093/oso/9780198802013.003.0009\">https://doi.org/10.1093/oso/9780198802013.003.0009</a>.","ama":"Hausel T, Mellit A, Pei D. Mirror symmetry with branes by equivariant verlinde formulas. In: <i>Geometry and Physics: Volume I</i>. Oxford University Press; 2018:189-218. doi:<a href=\"https://doi.org/10.1093/oso/9780198802013.003.0009\">10.1093/oso/9780198802013.003.0009</a>"},"abstract":[{"text":"This chapter finds an agreement of equivariant indices of semi-classical homomorphisms between pairwise mirror branes in the GL2 Higgs moduli space on a Riemann surface. On one side of the agreement, components of the Lagrangian brane of U(1,1) Higgs bundles, whose mirror was proposed by Hitchin to be certain even exterior powers of the hyperholomorphic Dirac bundle on the SL2 Higgs moduli space, are present. The agreement arises from a mysterious functional equation. This gives strong computational evidence for Hitchin’s proposal.","lang":"eng"}],"title":"Mirror symmetry with branes by equivariant verlinde formulas","date_updated":"2026-04-16T10:30:22Z","article_processing_charge":"No","department":[{"_id":"TaHa"}],"day":"01","oa_version":"None","language":[{"iso":"eng"}],"page":"189-218","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","quality_controlled":"1","publication_status":"published","date_published":"2018-01-01T00:00:00Z","year":"2018","month":"01","date_created":"2019-06-06T12:42:01Z","publication":"Geometry and Physics: Volume I","_id":"6525","publication_identifier":{"eisbn":["9780191840500"],"isbn":["9780198802013"]},"fulldoi":"https://doi.org/10.1093/oso/9780198802013.003.0009","author":[{"full_name":"Hausel, Tamás","orcid":"0000-0002-9582-2634","last_name":"Hausel","first_name":"Tamás","id":"4A0666D8-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Mellit, Anton","first_name":"Anton","id":"388D3134-F248-11E8-B48F-1D18A9856A87","last_name":"Mellit"},{"full_name":"Pei, Du","last_name":"Pei","first_name":"Du"}],"publisher":"Oxford University Press","scopus_import":"1","type":"book_chapter","status":"public","doi":"10.1093/oso/9780198802013.003.0009"},{"month":"12","publication_status":"published","date_published":"2018-12-01T00:00:00Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_processing_charge":"No","department":[{"_id":"DaAl"}],"citation":{"short":"D.-A. Alistarh, Z. Allen-Zhu, J. Li, in:, Advances in Neural Information Processing Systems, Neural Information Processing Systems Foundation, 2018, pp. 4613–4623.","apa":"Alistarh, D.-A., Allen-Zhu, Z., &#38; Li, J. (2018). Byzantine stochastic gradient descent. In <i>Advances in Neural Information Processing Systems</i> (Vol. 2018, pp. 4613–4623). Montreal, Canada: Neural Information Processing Systems Foundation.","mla":"Alistarh, Dan-Adrian, et al. “Byzantine Stochastic Gradient Descent.” <i>Advances in Neural Information Processing Systems</i>, vol. 2018, Neural Information Processing Systems Foundation, 2018, pp. 4613–23.","ista":"Alistarh D-A, Allen-Zhu Z, Li J. 2018. Byzantine stochastic gradient descent. Advances in Neural Information Processing Systems. NeurIPS: Conference on Neural Information Processing Systems vol. 2018, 4613–4623.","ieee":"D.-A. Alistarh, Z. Allen-Zhu, and J. Li, “Byzantine stochastic gradient descent,” in <i>Advances in Neural Information Processing Systems</i>, Montreal, Canada, 2018, vol. 2018, pp. 4613–4623.","ama":"Alistarh D-A, Allen-Zhu Z, Li J. Byzantine stochastic gradient descent. In: <i>Advances in Neural Information Processing Systems</i>. Vol 2018. Neural Information Processing Systems Foundation; 2018:4613-4623.","chicago":"Alistarh, Dan-Adrian, Zeyuan Allen-Zhu, and Jerry Li. “Byzantine Stochastic Gradient Descent.” In <i>Advances in Neural Information Processing Systems</i>, 2018:4613–23. Neural Information Processing Systems Foundation, 2018."},"volume":2018,"arxiv":1,"oa":1,"scopus_import":"1","publisher":"Neural Information Processing Systems Foundation","_id":"6558","publication":"Advances in Neural Information Processing Systems","year":"2018","external_id":{"arxiv":["1803.08917"],"isi":["000461823304061"]},"quality_controlled":"1","page":"4613-4623","isi":1,"oa_version":"Published Version","language":[{"iso":"eng"}],"date_updated":"2026-06-18T19:08:25Z","title":"Byzantine stochastic gradient descent","day":"01","abstract":[{"lang":"eng","text":"This paper studies the problem of distributed stochastic optimization in an adversarial setting where, out of m machines which allegedly compute stochastic gradients every iteration, an α-fraction are Byzantine, and may behave adversarially. Our main result is a variant of stochastic gradient descent (SGD) which finds ε-approximate minimizers of convex functions in T=O~(1/ε²m+α²/ε²) iterations. In contrast, traditional mini-batch SGD needs T=O(1/ε²m) iterations, but cannot tolerate Byzantine failures. Further, we provide a lower bound showing that, up to logarithmic factors, our algorithm is information-theoretically optimal both in terms of sample complexity and time complexity."}],"intvolume":"      2018","status":"public","type":"conference","conference":{"end_date":"2018-12-08","name":"NeurIPS: Conference on Neural Information Processing Systems","start_date":"2018-12-02","location":"Montreal, Canada"},"ddc":["000"],"author":[{"full_name":"Alistarh, Dan-Adrian","orcid":"0000-0003-3650-940X","last_name":"Alistarh","first_name":"Dan-Adrian","id":"4A899BFC-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Allen-Zhu, Zeyuan","first_name":"Zeyuan","last_name":"Allen-Zhu"},{"full_name":"Li, Jerry","last_name":"Li","first_name":"Jerry"}],"main_file_link":[{"url":"https://arxiv.org/abs/1803.08917","open_access":"1"}],"date_created":"2019-06-13T08:22:37Z"},{"type":"conference","arxiv":1,"doi":"10.1109/istc.2018.8625281","status":"public","oa":1,"extern":"1","conference":{"end_date":"2018-12-07","start_date":"2018-12-03","name":"ISTC: Symposium on Turbo Codes & Iterative Information Processing","location":"Hong Kong, China"},"author":[{"full_name":"Hashemi, Seyyed Ali","first_name":"Seyyed Ali","last_name":"Hashemi"},{"last_name":"Doan","first_name":"Nghia","full_name":"Doan, Nghia"},{"first_name":"Marco","id":"27EB676C-8706-11E9-9510-7717E6697425","last_name":"Mondelli","orcid":"0000-0002-3242-7020","full_name":"Mondelli, Marco"},{"full_name":"Gross, Warren ","last_name":"Gross","first_name":"Warren "}],"fulldoi":"https://doi.org/10.1109/istc.2018.8625281","publisher":"IEEE","publication":"2018 IEEE 10th International Symposium on Turbo Codes & Iterative Information Processing","date_created":"2019-07-23T09:12:43Z","main_file_link":[{"url":"https://arxiv.org/abs/1807.03912","open_access":"1"}],"_id":"6664","date_published":"2018-12-01T00:00:00Z","external_id":{"arxiv":["1807.03912"]},"publication_status":"published","month":"12","year":"2018","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","page":"1-5","quality_controlled":"1","day":"01","date_updated":"2021-01-12T08:08:29Z","title":"Decoding Reed-Muller and polar codes by successive factor graph permutations","language":[{"iso":"eng"}],"oa_version":"Preprint","abstract":[{"text":"Reed-Muller (RM) and polar codes are a class of capacity-achieving channel coding schemes with the same factor graph representation. Low-complexity decoding algorithms fall short in providing a good error-correction performance for RM and polar codes. Using the symmetric group of RM and polar codes, the specific decoding algorithm can be carried out on multiple permutations of the factor graph to boost the error-correction performance. However, this approach results in high decoding complexity. In this paper, we first derive the total number of factor graph permutations on which the decoding can be performed. We further propose a successive permutation (SP) scheme which finds the permutations on the fly, thus the decoding always progresses on a single factor graph permutation. We show that SP can be used to improve the error-correction performance of RM and polar codes under successive-cancellation (SC) and SC list (SCL) decoding, while keeping the memory requirements of the decoders unaltered. Our results for RM and polar codes of length 128 and rate 0.5 show that when SP is used and at a target frame error rate of 10 -4 , up to 0.5 dB and 0.1 dB improvement can be achieved for RM and polar codes respectively.","lang":"eng"}],"citation":{"ieee":"S. A. Hashemi, N. Doan, M. Mondelli, and W. Gross, “Decoding Reed-Muller and polar codes by successive factor graph permutations,” in <i>2018 IEEE 10th International Symposium on Turbo Codes &#38; Iterative Information Processing</i>, Hong Kong, China, 2018, pp. 1–5.","apa":"Hashemi, S. A., Doan, N., Mondelli, M., &#38; Gross, W. (2018). Decoding Reed-Muller and polar codes by successive factor graph permutations. In <i>2018 IEEE 10th International Symposium on Turbo Codes &#38; Iterative Information Processing</i> (pp. 1–5). Hong Kong, China: IEEE. <a href=\"https://doi.org/10.1109/istc.2018.8625281\">https://doi.org/10.1109/istc.2018.8625281</a>","ista":"Hashemi SA, Doan N, Mondelli M, Gross W. 2018. Decoding Reed-Muller and polar codes by successive factor graph permutations. 2018 IEEE 10th International Symposium on Turbo Codes &#38; Iterative Information Processing. ISTC: Symposium on Turbo Codes &#38; Iterative Information Processing, 1–5.","mla":"Hashemi, Seyyed Ali, et al. “Decoding Reed-Muller and Polar Codes by Successive Factor Graph Permutations.” <i>2018 IEEE 10th International Symposium on Turbo Codes &#38; Iterative Information Processing</i>, IEEE, 2018, pp. 1–5, doi:<a href=\"https://doi.org/10.1109/istc.2018.8625281\">10.1109/istc.2018.8625281</a>.","short":"S.A. Hashemi, N. Doan, M. Mondelli, W. Gross, in:, 2018 IEEE 10th International Symposium on Turbo Codes &#38; Iterative Information Processing, IEEE, 2018, pp. 1–5.","ama":"Hashemi SA, Doan N, Mondelli M, Gross W. Decoding Reed-Muller and polar codes by successive factor graph permutations. In: <i>2018 IEEE 10th International Symposium on Turbo Codes &#38; Iterative Information Processing</i>. IEEE; 2018:1-5. doi:<a href=\"https://doi.org/10.1109/istc.2018.8625281\">10.1109/istc.2018.8625281</a>","chicago":"Hashemi, Seyyed Ali, Nghia Doan, Marco Mondelli, and Warren  Gross. “Decoding Reed-Muller and Polar Codes by Successive Factor Graph Permutations.” In <i>2018 IEEE 10th International Symposium on Turbo Codes &#38; Iterative Information Processing</i>, 1–5. IEEE, 2018. <a href=\"https://doi.org/10.1109/istc.2018.8625281\">https://doi.org/10.1109/istc.2018.8625281</a>."}},{"month":"11","year":"2018","date_published":"2018-11-01T00:00:00Z","external_id":{"arxiv":["1711.01339"]},"publication_status":"published","quality_controlled":"1","related_material":{"record":[{"status":"public","id":"9002","relation":"later_version"}]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","page":"1-5","language":[{"iso":"eng"}],"oa_version":"Preprint","day":"01","date_updated":"2025-09-10T09:59:12Z","title":"Binary linear codes with optimal scaling: Polar codes with large kernels","abstract":[{"text":"We prove that, at least for the binary erasure channel, the polar-coding paradigm gives rise to codes that not only approach the Shannon limit but, in fact, do so under the best possible scaling of their block length as a function of the gap to capacity. This result exhibits the first known family of binary codes that attain both optimal scaling and quasi-linear complexity of encoding and decoding. Specifically, for any fixed δ > 0, we exhibit binary linear codes that ensure reliable communication at rates within ε > 0 of capacity with block length n = O(1/ε 2+δ ), construction complexity Θ(n), and encoding/decoding complexity Θ(n log n).","lang":"eng"}],"citation":{"ieee":"A. Fazeli, H. Hassani, M. Mondelli, and A. Vardy, “Binary linear codes with optimal scaling: Polar codes with large kernels,” in <i>2018 IEEE Information Theory Workshop</i>, Guangzhou, China, 2018, pp. 1–5.","short":"A. Fazeli, H. Hassani, M. Mondelli, A. Vardy, in:, 2018 IEEE Information Theory Workshop, IEEE, 2018, pp. 1–5.","ista":"Fazeli A, Hassani H, Mondelli M, Vardy A. 2018. Binary linear codes with optimal scaling: Polar codes with large kernels. 2018 IEEE Information Theory Workshop. ITW: Information Theory Workshop, 1–5.","mla":"Fazeli, Arman, et al. “Binary Linear Codes with Optimal Scaling: Polar Codes with Large Kernels.” <i>2018 IEEE Information Theory Workshop</i>, IEEE, 2018, pp. 1–5, doi:<a href=\"https://doi.org/10.1109/itw.2018.8613428\">10.1109/itw.2018.8613428</a>.","apa":"Fazeli, A., Hassani, H., Mondelli, M., &#38; Vardy, A. (2018). Binary linear codes with optimal scaling: Polar codes with large kernels. In <i>2018 IEEE Information Theory Workshop</i> (pp. 1–5). Guangzhou, China: IEEE. <a href=\"https://doi.org/10.1109/itw.2018.8613428\">https://doi.org/10.1109/itw.2018.8613428</a>","ama":"Fazeli A, Hassani H, Mondelli M, Vardy A. Binary linear codes with optimal scaling: Polar codes with large kernels. In: <i>2018 IEEE Information Theory Workshop</i>. IEEE; 2018:1-5. doi:<a href=\"https://doi.org/10.1109/itw.2018.8613428\">10.1109/itw.2018.8613428</a>","chicago":"Fazeli, Arman, Hamed Hassani, Marco Mondelli, and Alexander Vardy. “Binary Linear Codes with Optimal Scaling: Polar Codes with Large Kernels.” In <i>2018 IEEE Information Theory Workshop</i>, 1–5. IEEE, 2018. <a href=\"https://doi.org/10.1109/itw.2018.8613428\">https://doi.org/10.1109/itw.2018.8613428</a>."},"status":"public","doi":"10.1109/itw.2018.8613428","arxiv":1,"type":"conference","extern":"1","conference":{"end_date":"2018-11-29","name":"ITW: Information Theory Workshop","start_date":"2018-11-25","location":"Guangzhou, China"},"oa":1,"publisher":"IEEE","author":[{"first_name":"Arman","last_name":"Fazeli","full_name":"Fazeli, Arman"},{"full_name":"Hassani, Hamed","last_name":"Hassani","first_name":"Hamed"},{"first_name":"Marco","id":"27EB676C-8706-11E9-9510-7717E6697425","orcid":"0000-0002-3242-7020","last_name":"Mondelli","full_name":"Mondelli, Marco"},{"full_name":"Vardy, Alexander","last_name":"Vardy","first_name":"Alexander"}],"fulldoi":"https://doi.org/10.1109/itw.2018.8613428","main_file_link":[{"url":"https://arxiv.org/abs/1711.01339","open_access":"1"}],"_id":"6665","publication":"2018 IEEE Information Theory Workshop","date_created":"2019-07-23T11:01:42Z"},{"publication_identifier":{"eissn":["1558-0857"]},"_id":"6674","issue":"9","date_created":"2019-07-24T08:59:41Z","publication":"IEEE Transactions on Communications","publisher":"IEEE","fulldoi":"https://doi.org/10.1109/tcomm.2018.2832207","author":[{"full_name":"Hashemi, Seyyed Ali","last_name":"Hashemi","first_name":"Seyyed Ali"},{"full_name":"Mondelli, Marco","last_name":"Mondelli","orcid":"0000-0002-3242-7020","id":"27EB676C-8706-11E9-9510-7717E6697425","first_name":"Marco"},{"last_name":"Hassani","first_name":"S. Hamed","full_name":"Hassani, S. Hamed"},{"last_name":"Condo","first_name":"Carlo","full_name":"Condo, Carlo"},{"first_name":"Rudiger L.","last_name":"Urbanke","full_name":"Urbanke, Rudiger L."},{"full_name":"Gross, Warren J.","last_name":"Gross","first_name":"Warren J."}],"extern":"1","doi":"10.1109/tcomm.2018.2832207","status":"public","type":"journal_article","citation":{"chicago":"Hashemi, Seyyed Ali, Marco Mondelli, S. Hamed Hassani, Carlo Condo, Rudiger L. Urbanke, and Warren J. Gross. “Decoder Partitioning: Towards Practical List Decoding of Polar Codes.” <i>IEEE Transactions on Communications</i>. IEEE, 2018. <a href=\"https://doi.org/10.1109/tcomm.2018.2832207\">https://doi.org/10.1109/tcomm.2018.2832207</a>.","ama":"Hashemi SA, Mondelli M, Hassani SH, Condo C, Urbanke RL, Gross WJ. Decoder partitioning: Towards practical list decoding of polar codes. <i>IEEE Transactions on Communications</i>. 2018;66(9):3749-3759. doi:<a href=\"https://doi.org/10.1109/tcomm.2018.2832207\">10.1109/tcomm.2018.2832207</a>","short":"S.A. Hashemi, M. Mondelli, S.H. Hassani, C. Condo, R.L. Urbanke, W.J. Gross, IEEE Transactions on Communications 66 (2018) 3749–3759.","apa":"Hashemi, S. A., Mondelli, M., Hassani, S. H., Condo, C., Urbanke, R. L., &#38; Gross, W. J. (2018). Decoder partitioning: Towards practical list decoding of polar codes. <i>IEEE Transactions on Communications</i>. IEEE. <a href=\"https://doi.org/10.1109/tcomm.2018.2832207\">https://doi.org/10.1109/tcomm.2018.2832207</a>","mla":"Hashemi, Seyyed Ali, et al. “Decoder Partitioning: Towards Practical List Decoding of Polar Codes.” <i>IEEE Transactions on Communications</i>, vol. 66, no. 9, IEEE, 2018, pp. 3749–59, doi:<a href=\"https://doi.org/10.1109/tcomm.2018.2832207\">10.1109/tcomm.2018.2832207</a>.","ista":"Hashemi SA, Mondelli M, Hassani SH, Condo C, Urbanke RL, Gross WJ. 2018. Decoder partitioning: Towards practical list decoding of polar codes. IEEE Transactions on Communications. 66(9), 3749–3759.","ieee":"S. A. Hashemi, M. Mondelli, S. H. Hassani, C. Condo, R. L. Urbanke, and W. J. Gross, “Decoder partitioning: Towards practical list decoding of polar codes,” <i>IEEE Transactions on Communications</i>, vol. 66, no. 9. IEEE, pp. 3749–3759, 2018."},"abstract":[{"text":"Polar codes represent one of the major recent breakthroughs in coding theory and, because of their attractive features, they have been selected for the incoming 5G standard. As such, a lot of attention has been devoted to the development of decoding algorithms with good error performance and efficient hardware implementation. One of the leading candidates in this regard is represented by successive-cancellation list (SCL) decoding. However, its hardware implementation requires a large amount of memory. Recently, a partitioned SCL (PSCL) decoder has been proposed to significantly reduce the memory consumption. In this paper, we consider the paradigm of PSCL decoding from a practical standpoint, and we provide several improvements. First, by changing the target signal-to-noise ratio and consequently modifying the construction of the code, we are able to improve the performance at no additional computational, latency, or memory cost. Second, we bridge the performance gap between SCL and PSCL decoding by introducing a generalized PSCL decoder and a layered PSCL decoder. In this way, we obtain almost the same performance of the SCL decoder with a significantly lower memory requirement, as testified by hardware implementation results. Third, we present an optimal scheme to allocate cyclic redundancy checks. Finally, we provide a lower bound on the list size that guarantees optimal maximum a posteriori performance for the binary erasure channel.","lang":"eng"}],"intvolume":"        66","volume":66,"oa_version":"None","language":[{"iso":"eng"}],"title":"Decoder partitioning: Towards practical list decoding of polar codes","date_updated":"2021-01-12T08:08:31Z","day":"01","quality_controlled":"1","page":"3749-3759","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2018","month":"09","date_published":"2018-09-01T00:00:00Z","publication_status":"published"},{"publication":"2018 IEEE International Symposium on Information Theory","_id":"6675","publication_identifier":{"eissn":["2157-8117"]},"fulldoi":"https://doi.org/10.1109/isit.2018.8437479","publisher":"IEEE","oa":1,"extern":"1","arxiv":1,"citation":{"ama":"Mondelli M, Hassani H, Urbanke R. A new coding paradigm for the primitive relay channel. In: <i>2018 IEEE International Symposium on Information Theory</i>. IEEE; 2018:351-355. doi:<a href=\"https://doi.org/10.1109/isit.2018.8437479\">10.1109/isit.2018.8437479</a>","chicago":"Mondelli, Marco, Hamed Hassani, and Rudiger Urbanke. “A New Coding Paradigm for the Primitive Relay Channel.” In <i>2018 IEEE International Symposium on Information Theory</i>, 351–55. IEEE, 2018. <a href=\"https://doi.org/10.1109/isit.2018.8437479\">https://doi.org/10.1109/isit.2018.8437479</a>.","ieee":"M. Mondelli, H. Hassani, and R. Urbanke, “A new coding paradigm for the primitive relay channel,” in <i>2018 IEEE International Symposium on Information Theory</i>, Vail, CO, United States, 2018, pp. 351–355.","short":"M. Mondelli, H. Hassani, R. Urbanke, in:, 2018 IEEE International Symposium on Information Theory, IEEE, 2018, pp. 351–355.","ista":"Mondelli M, Hassani H, Urbanke R. 2018. A new coding paradigm for the primitive relay channel. 2018 IEEE International Symposium on Information Theory. ISIT: International Symposium on Information Theory , 351–355.","apa":"Mondelli, M., Hassani, H., &#38; Urbanke, R. (2018). A new coding paradigm for the primitive relay channel. In <i>2018 IEEE International Symposium on Information Theory</i> (pp. 351–355). Vail, CO, United States: IEEE. <a href=\"https://doi.org/10.1109/isit.2018.8437479\">https://doi.org/10.1109/isit.2018.8437479</a>","mla":"Mondelli, Marco, et al. “A New Coding Paradigm for the Primitive Relay Channel.” <i>2018 IEEE International Symposium on Information Theory</i>, IEEE, 2018, pp. 351–55, doi:<a href=\"https://doi.org/10.1109/isit.2018.8437479\">10.1109/isit.2018.8437479</a>."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","related_material":{"record":[{"relation":"later_version","status":"public","id":"7007"}]},"publication_status":"published","date_published":"2018-06-16T00:00:00Z","month":"06","date_created":"2019-07-24T09:10:38Z","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1801.03153"}],"author":[{"full_name":"Mondelli, Marco","last_name":"Mondelli","orcid":"0000-0002-3242-7020","id":"27EB676C-8706-11E9-9510-7717E6697425","first_name":"Marco"},{"last_name":"Hassani","first_name":"Hamed","full_name":"Hassani, Hamed"},{"last_name":"Urbanke","first_name":"Rudiger","full_name":"Urbanke, Rudiger"}],"conference":{"end_date":"2018-06-22","name":"ISIT: International Symposium on Information Theory ","start_date":"2018-06-17","location":"Vail, CO, United States"},"type":"conference","status":"public","doi":"10.1109/isit.2018.8437479","abstract":[{"lang":"eng","text":"We present a coding paradigm that provides a new achievable rate for the primitive relay channel by combining compress-and-forward and decode-and-forward with a chaining construction. In the primitive relay channel model, the source broadcasts a message to the relay and to the destination; and the relay facilitates this communication by sending an additional message to the destination through a separate channel. Two well-known coding approaches for this setting are decode-and-forward and compress-and-forward: in the former, the relay decodes the message and sends some of the information to the destination; in the latter, the relay does not attempt to decode, but it sends a compressed description of the received sequence to the destination via Wyner-Ziv coding. In our scheme, we transmit over pairs of blocks and we use compress-and-forward for the first block and decode-and-forward for the second. In particular, in the first block, the relay does not attempt to decode and it sends only a part of the compressed description of the received sequence; in the second block, the relay decodes the message and sends this information plus the remaining part of the compressed sequence relative to the first block. As a result, we strictly outperform both compress-and- forward and decode-and-forward. Furthermore, this paradigm can be implemented with a low-complexity polar coding scheme that has the typical attractive features of polar codes, i.e., quasi-linear encoding/decoding complexity and super-polynomial decay of the error probability. Throughout the paper we consider as a running example the special case of the erasure relay channel and we compare the rates achievable by our proposed scheme with the existing upper and lower bounds."}],"day":"16","title":"A new coding paradigm for the primitive relay channel","date_updated":"2024-10-09T20:59:04Z","language":[{"iso":"eng"}],"oa_version":"Preprint","page":"351-355","quality_controlled":"1","external_id":{"arxiv":["1801.03153"]},"year":"2018"},{"language":[{"iso":"eng"}],"oa_version":"Preprint","day":"01","date_updated":"2023-02-23T12:50:46Z","title":"How to achieve the capacity of asymmetric channels","abstract":[{"lang":"eng","text":"We survey coding techniques that enable reliable transmission at rates that approach the capacity of an arbitrary discrete memoryless channel. In particular, we take the point of view of modern coding theory and discuss how recent advances in coding for symmetric channels help provide more efficient solutions for the asymmetric case. We consider, in more detail, three basic coding paradigms. The first one is Gallager's scheme that consists of concatenating a linear code with a non-linear mapping so that the input distribution can be appropriately shaped. We explicitly show that both polar codes and spatially coupled codes can be employed in this scenario. Furthermore, we derive a scaling law between the gap to capacity, the cardinality of the input and output alphabets, and the required size of the mapper. The second one is an integrated scheme in which the code is used both for source coding, in order to create codewords distributed according to the capacity-achieving input distribution, and for channel coding, in order to provide error protection. Such a technique has been recently introduced by Honda and Yamamoto in the context of polar codes, and we show how to apply it also to the design of sparse graph codes. The third paradigm is based on an idea of Böcherer and Mathar, and separates the two tasks of source coding and channel coding by a chaining construction that binds together several codewords. We present conditions for the source code and the channel code, and we describe how to combine any source code with any channel code that fulfill those conditions, in order to provide capacity-achieving schemes for asymmetric channels. In particular, we show that polar codes, spatially coupled codes, and homophonic codes are suitable as basic building blocks of the proposed coding strategy. Rather than focusing on the exact details of the schemes, the purpose of this tutorial is to present different coding techniques that can then be implemented with many variants. There is no absolute winner and, in order to understand the most suitable technique for a specific application scenario, we provide a detailed comparison that takes into account several performance metrics."}],"intvolume":"        64","year":"2018","external_id":{"arxiv":["1406.7373"]},"quality_controlled":"1","page":"3371-3393","author":[{"orcid":"0000-0002-3242-7020","last_name":"Mondelli","id":"27EB676C-8706-11E9-9510-7717E6697425","first_name":"Marco","full_name":"Mondelli, Marco"},{"full_name":"Hassani, Hamed","last_name":"Hassani","first_name":"Hamed"},{"full_name":"Urbanke, Rudiger ","last_name":"Urbanke","first_name":"Rudiger "}],"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1406.7373"}],"issue":"5","date_created":"2019-07-24T12:38:49Z","doi":"10.1109/tit.2018.2789885","status":"public","type":"journal_article","citation":{"mla":"Mondelli, Marco, et al. “How to Achieve the Capacity of Asymmetric Channels.” <i>IEEE Transactions on Information Theory</i>, vol. 64, no. 5, IEEE, 2018, pp. 3371–93, doi:<a href=\"https://doi.org/10.1109/tit.2018.2789885\">10.1109/tit.2018.2789885</a>.","ista":"Mondelli M, Hassani H, Urbanke R. 2018. How to achieve the capacity of asymmetric channels. IEEE Transactions on Information Theory. 64(5), 3371–3393.","apa":"Mondelli, M., Hassani, H., &#38; Urbanke, R. (2018). How to achieve the capacity of asymmetric channels. <i>IEEE Transactions on Information Theory</i>. IEEE. <a href=\"https://doi.org/10.1109/tit.2018.2789885\">https://doi.org/10.1109/tit.2018.2789885</a>","short":"M. Mondelli, H. Hassani, R. Urbanke, IEEE Transactions on Information Theory 64 (2018) 3371–3393.","ieee":"M. Mondelli, H. Hassani, and R. Urbanke, “How to achieve the capacity of asymmetric channels,” <i>IEEE Transactions on Information Theory</i>, vol. 64, no. 5. IEEE, pp. 3371–3393, 2018.","chicago":"Mondelli, Marco, Hamed Hassani, and Rudiger  Urbanke. “How to Achieve the Capacity of Asymmetric Channels.” <i>IEEE Transactions on Information Theory</i>. IEEE, 2018. <a href=\"https://doi.org/10.1109/tit.2018.2789885\">https://doi.org/10.1109/tit.2018.2789885</a>.","ama":"Mondelli M, Hassani H, Urbanke R. How to achieve the capacity of asymmetric channels. <i>IEEE Transactions on Information Theory</i>. 2018;64(5):3371-3393. doi:<a href=\"https://doi.org/10.1109/tit.2018.2789885\">10.1109/tit.2018.2789885</a>"},"volume":64,"month":"05","date_published":"2018-05-01T00:00:00Z","publication_status":"published","article_type":"original","related_material":{"record":[{"relation":"earlier_version","status":"public","id":"6740"}]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"IEEE","fulldoi":"https://doi.org/10.1109/tit.2018.2789885","_id":"6678","publication_identifier":{"issn":["0018-9448","1557-9654"]},"publication":"IEEE Transactions on Information Theory","arxiv":1,"extern":"1","oa":1},{"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","quality_controlled":"1","publication_status":"published","external_id":{"arxiv":["1806.11195"]},"date_published":"2018-12-01T00:00:00Z","month":"12","year":"2018","abstract":[{"text":"Polar codes are a channel coding scheme for the next generation of wireless communications standard (5G). The belief propagation (BP) decoder allows for parallel decoding of polar codes, making it suitable for high throughput applications. However, the error-correction performance of polar codes under BP decoding is far from the requirements of 5G. It has been shown that the error-correction performance of BP can be improved if the decoding is performed on multiple permuted factor graphs of polar codes. However, a different BP decoding scheduling is required for each factor graph permutation which results in the design of a different decoder for each permutation. Moreover, the selection of the different factor graph permutations is at random, which prevents the decoder to achieve a desirable error correction performance with a small number of permutations. In this paper, we first show that the permutations on the factor graph can be mapped into suitable permutations on the codeword positions. As a result, we can make use of a single decoder for all the permutations. In addition, we introduce a method to construct a set of predetermined permutations which can provide the correct codeword if the decoding fails on the original permutation. We show that for the 5G polar code of length 1024, the error-correction performance of the proposed decoder is more than 0.25 dB better than that of the BP decoder with the same number of random permutations at the frame error rate of 10 -4 .","lang":"eng"}],"citation":{"ista":"Doan N, Hashemi SA, Mondelli M, Gross WJ. 2018. On the decoding of polar codes on permuted factor graphs. 2018 IEEE Global Communications Conference . GLOBECOM: Global Communications Conference.","mla":"Doan, Nghia, et al. “On the Decoding of Polar Codes on Permuted Factor Graphs.” <i>2018 IEEE Global Communications Conference </i>, IEEE, 2018, doi:<a href=\"https://doi.org/10.1109/glocom.2018.8647308\">10.1109/glocom.2018.8647308</a>.","apa":"Doan, N., Hashemi, S. A., Mondelli, M., &#38; Gross, W. J. (2018). On the decoding of polar codes on permuted factor graphs. In <i>2018 IEEE Global Communications Conference </i>. Abu Dhabi, United Arab Emirates: IEEE. <a href=\"https://doi.org/10.1109/glocom.2018.8647308\">https://doi.org/10.1109/glocom.2018.8647308</a>","short":"N. Doan, S.A. Hashemi, M. Mondelli, W.J. Gross, in:, 2018 IEEE Global Communications Conference , IEEE, 2018.","ieee":"N. Doan, S. A. Hashemi, M. Mondelli, and W. J. Gross, “On the decoding of polar codes on permuted factor graphs,” in <i>2018 IEEE Global Communications Conference </i>, Abu Dhabi, United Arab Emirates, 2018.","chicago":"Doan, Nghia, Seyyed Ali Hashemi, Marco Mondelli, and Warren J. Gross. “On the Decoding of Polar Codes on Permuted Factor Graphs.” In <i>2018 IEEE Global Communications Conference </i>. IEEE, 2018. <a href=\"https://doi.org/10.1109/glocom.2018.8647308\">https://doi.org/10.1109/glocom.2018.8647308</a>.","ama":"Doan N, Hashemi SA, Mondelli M, Gross WJ. On the decoding of polar codes on permuted factor graphs. In: <i>2018 IEEE Global Communications Conference </i>. IEEE; 2018. doi:<a href=\"https://doi.org/10.1109/glocom.2018.8647308\">10.1109/glocom.2018.8647308</a>"},"day":"01","title":"On the decoding of polar codes on permuted factor graphs","date_updated":"2021-01-12T08:08:42Z","oa_version":"Preprint","language":[{"iso":"eng"}],"oa":1,"extern":"1","conference":{"end_date":"2018-12-13","start_date":"2018-12-09","name":"GLOBECOM: Global Communications Conference","location":"Abu Dhabi, United Arab Emirates"},"type":"conference","status":"public","arxiv":1,"doi":"10.1109/glocom.2018.8647308","publication":"2018 IEEE Global Communications Conference ","date_created":"2019-07-30T06:43:15Z","main_file_link":[{"url":"https://arxiv.org/abs/1806.11195","open_access":"1"}],"_id":"6728","publication_identifier":{"isbn":["9781538647271"]},"author":[{"full_name":"Doan, Nghia","last_name":"Doan","first_name":"Nghia"},{"first_name":"Seyyed Ali","last_name":"Hashemi","full_name":"Hashemi, Seyyed Ali"},{"id":"27EB676C-8706-11E9-9510-7717E6697425","first_name":"Marco","last_name":"Mondelli","orcid":"0000-0002-3242-7020","full_name":"Mondelli, Marco"},{"full_name":"Gross, Warren J.","last_name":"Gross","first_name":"Warren J."}],"fulldoi":"https://doi.org/10.1109/glocom.2018.8647308","publisher":"IEEE"},{"type":"journal_article","status":"public","doi":"10.1007/s41468-018-0021-5","file_date_updated":"2020-07-14T12:47:40Z","date_created":"2019-08-08T06:47:40Z","issue":"3-4","ddc":["514"],"author":[{"last_name":"Filakovský","first_name":"Marek","id":"3E8AF77E-F248-11E8-B48F-1D18A9856A87","full_name":"Filakovský, Marek"},{"orcid":"0000-0001-8878-8397","last_name":"Franek","id":"473294AE-F248-11E8-B48F-1D18A9856A87","first_name":"Peter","full_name":"Franek, Peter"},{"full_name":"Wagner, Uli","first_name":"Uli","id":"36690CA2-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-1494-0568","last_name":"Wagner"},{"id":"3AA52972-F248-11E8-B48F-1D18A9856A87","first_name":"Stephan Y","last_name":"Zhechev","full_name":"Zhechev, Stephan Y"}],"tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"corr_author":"1","page":"177-231","quality_controlled":"1","year":"2018","intvolume":"         2","file":[{"relation":"main_file","file_size":1056278,"date_created":"2019-08-08T06:55:21Z","file_id":"6775","creator":"dernst","checksum":"cf9e7fcd2a113dd4828774fc75cdb7e8","content_type":"application/pdf","date_updated":"2020-07-14T12:47:40Z","file_name":"2018_JourAppliedComputTopology_Filakovsky.pdf","access_level":"open_access"}],"abstract":[{"text":"A central problem of algebraic topology is to understand the homotopy groups  𝜋𝑑(𝑋)  of a topological space X. For the computational version of the problem, it is well known that there is no algorithm to decide whether the fundamental group  𝜋1(𝑋)  of a given finite simplicial complex X is trivial. On the other hand, there are several algorithms that, given a finite simplicial complex X that is simply connected (i.e., with   𝜋1(𝑋)  trivial), compute the higher homotopy group   𝜋𝑑(𝑋)  for any given   𝑑≥2 . However, these algorithms come with a caveat: They compute the isomorphism type of   𝜋𝑑(𝑋) ,   𝑑≥2  as an abstract finitely generated abelian group given by generators and relations, but they work with very implicit representations of the elements of   𝜋𝑑(𝑋) . Converting elements of this abstract group into explicit geometric maps from the d-dimensional sphere   𝑆𝑑  to X has been one of the main unsolved problems in the emerging field of computational homotopy theory. Here we present an algorithm that, given a simply connected space X, computes   𝜋𝑑(𝑋)  and represents its elements as simplicial maps from a suitable triangulation of the d-sphere   𝑆𝑑  to X. For fixed d, the algorithm runs in time exponential in   size(𝑋) , the number of simplices of X. Moreover, we prove that this is optimal: For every fixed   𝑑≥2 , we construct a family of simply connected spaces X such that for any simplicial map representing a generator of   𝜋𝑑(𝑋) , the size of the triangulation of   𝑆𝑑  on which the map is defined, is exponential in size(𝑋) .","lang":"eng"}],"title":"Computing simplicial representatives of homotopy group elements","date_updated":"2026-04-08T13:56:01Z","day":"01","oa_version":"Published Version","language":[{"iso":"eng"}],"oa":1,"has_accepted_license":"1","project":[{"_id":"25F8B9BC-B435-11E9-9278-68D0E5697425","call_identifier":"FWF","grant_number":"M01980","name":"Robust Invariants of Nonlinear Systems"},{"call_identifier":"FWF","name":"FWF Open Access Fund","_id":"3AC91DDA-15DF-11EA-824D-93A3E7B544D1"}],"publication":"Journal of Applied and Computational Topology","publication_identifier":{"eissn":["2367-1734"],"issn":["2367-1726"]},"_id":"6774","fulldoi":"https://doi.org/10.1007/s41468-018-0021-5","publisher":"Springer","scopus_import":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","related_material":{"record":[{"relation":"dissertation_contains","status":"public","id":"6681"}]},"article_type":"original","publication_status":"published","date_published":"2018-12-01T00:00:00Z","month":"12","volume":2,"citation":{"ama":"Filakovský M, Franek P, Wagner U, Zhechev SY. Computing simplicial representatives of homotopy group elements. <i>Journal of Applied and Computational Topology</i>. 2018;2(3-4):177-231. doi:<a href=\"https://doi.org/10.1007/s41468-018-0021-5\">10.1007/s41468-018-0021-5</a>","chicago":"Filakovský, Marek, Peter Franek, Uli Wagner, and Stephan Y Zhechev. “Computing Simplicial Representatives of Homotopy Group Elements.” <i>Journal of Applied and Computational Topology</i>. Springer, 2018. <a href=\"https://doi.org/10.1007/s41468-018-0021-5\">https://doi.org/10.1007/s41468-018-0021-5</a>.","ieee":"M. Filakovský, P. Franek, U. Wagner, and S. Y. Zhechev, “Computing simplicial representatives of homotopy group elements,” <i>Journal of Applied and Computational Topology</i>, vol. 2, no. 3–4. Springer, pp. 177–231, 2018.","ista":"Filakovský M, Franek P, Wagner U, Zhechev SY. 2018. Computing simplicial representatives of homotopy group elements. Journal of Applied and Computational Topology. 2(3–4), 177–231.","mla":"Filakovský, Marek, et al. “Computing Simplicial Representatives of Homotopy Group Elements.” <i>Journal of Applied and Computational Topology</i>, vol. 2, no. 3–4, Springer, 2018, pp. 177–231, doi:<a href=\"https://doi.org/10.1007/s41468-018-0021-5\">10.1007/s41468-018-0021-5</a>.","apa":"Filakovský, M., Franek, P., Wagner, U., &#38; Zhechev, S. Y. (2018). Computing simplicial representatives of homotopy group elements. <i>Journal of Applied and Computational Topology</i>. Springer. <a href=\"https://doi.org/10.1007/s41468-018-0021-5\">https://doi.org/10.1007/s41468-018-0021-5</a>","short":"M. Filakovský, P. Franek, U. Wagner, S.Y. Zhechev, Journal of Applied and Computational Topology 2 (2018) 177–231."},"department":[{"_id":"UlWa"}]},{"article_processing_charge":"No","department":[{"_id":"GeKa"},{"_id":"GradSch"}],"citation":{"ama":"Vukušić L. Charge sensing and spin relaxation times of holes in Ge hut wires. 2018. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:TH_1047\">10.15479/AT:ISTA:TH_1047</a>","chicago":"Vukušić, Lada. “Charge Sensing and Spin Relaxation Times of Holes in Ge Hut Wires.” Institute of Science and Technology Austria, 2018. <a href=\"https://doi.org/10.15479/AT:ISTA:TH_1047\">https://doi.org/10.15479/AT:ISTA:TH_1047</a>.","ieee":"L. Vukušić, “Charge sensing and spin relaxation times of holes in Ge hut wires,” Institute of Science and Technology Austria, 2018.","ista":"Vukušić L. 2018. Charge sensing and spin relaxation times of holes in Ge hut wires. Institute of Science and Technology Austria.","apa":"Vukušić, L. (2018). <i>Charge sensing and spin relaxation times of holes in Ge hut wires</i>. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:TH_1047\">https://doi.org/10.15479/AT:ISTA:TH_1047</a>","mla":"Vukušić, Lada. <i>Charge Sensing and Spin Relaxation Times of Holes in Ge Hut Wires</i>. Institute of Science and Technology Austria, 2018, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:TH_1047\">10.15479/AT:ISTA:TH_1047</a>.","short":"L. Vukušić, Charge Sensing and Spin Relaxation Times of Holes in Ge Hut Wires, Institute of Science and Technology Austria, 2018."},"date_published":"2018-09-01T00:00:00Z","publication_status":"published","month":"09","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","related_material":{"record":[{"relation":"part_of_dissertation","status":"public","id":"23"},{"id":"840","status":"public","relation":"part_of_dissertation"}]},"degree_awarded":"PhD","supervisor":[{"full_name":"Katsaros, Georgios","orcid":"0000-0001-8342-202X","last_name":"Katsaros","id":"38DB5788-F248-11E8-B48F-1D18A9856A87","first_name":"Georgios"}],"fulldoi":"https://doi.org/10.15479/AT:ISTA:TH_1047","publisher":"Institute of Science and Technology Austria","pubrep_id":"1047","publication_identifier":{"issn":["2663-337X"]},"_id":"69","OA_place":"publisher","oa":1,"has_accepted_license":"1","date_updated":"2026-04-08T14:09:47Z","publist_id":"7985","title":"Charge sensing and spin relaxation times of holes in Ge hut wires","day":"01","oa_version":"Published Version","language":[{"iso":"eng"}],"file":[{"file_size":28452385,"relation":"main_file","access_level":"open_access","date_updated":"2020-07-14T12:47:44Z","file_name":"2018_Thesis_Vukusic.pdf","content_type":"application/pdf","checksum":"c570b656e30749cd65b1c7e13a9ce0a8","creator":"dernst","file_id":"6247","date_created":"2019-04-09T07:00:40Z"},{"file_size":53058704,"relation":"source_file","date_updated":"2020-07-14T12:47:44Z","file_name":"2018_Thesis_Vukusic_source.zip","access_level":"closed","date_created":"2019-04-09T07:00:40Z","file_id":"6248","content_type":"application/zip","checksum":"7856771d9cd401fe0b311191076db6e1","creator":"dernst"}],"abstract":[{"lang":"eng","text":"A qubit, a unit of quantum information, is essentially any quantum mechanical two-level system which can be coherently controlled. Still, to be used for computation, it has to fulfill criteria. Qubits, regardless of the system in which they are realized, suffer from decoherence. This leads to loss of the information stored in the qubit. The upper bound of the time scale on which decoherence happens is set by the spin relaxation time. In this thesis I studied a two-level system consisting of a Zeeman-split hole spin confined in a quantum dot formed in a Ge hut wire. Such Ge hut wires have emerged as a promising material system for the realization of spin qubits, due to the combination of two significant properties: long spin coherence time as expected for group IV semiconductors due to the low hyperfine interaction and a strong valence band spin-orbit coupling. Here, I present how to fabricate quantum dot devices suitable for electrical transport measurements. Coupled quantum dot devices allowed the realization of a charge sensor, which is electrostatically and tunnel coupled to a quantum dot. By integrating the charge sensor into a radio-frequency reflectometry setup, I performed for the first time single-shot readout measurements of hole spins and extracted the hole spin relaxation times in Ge hut wires."}],"year":"2018","page":"103","ddc":["530","600"],"author":[{"last_name":"Vukušić","orcid":"0000-0003-2424-8636","id":"31E9F056-F248-11E8-B48F-1D18A9856A87","first_name":"Lada","full_name":"Vukušić, Lada"}],"tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"alternative_title":["ISTA Thesis"],"corr_author":"1","date_created":"2018-12-11T11:44:28Z","type":"dissertation","file_date_updated":"2020-07-14T12:47:44Z","doi":"10.15479/AT:ISTA:TH_1047","status":"public"},{"department":[{"_id":"LaEr"}],"article_processing_charge":"No","volume":171,"citation":{"short":"J. Lee, K. Schnelli, Probability Theory and Related Fields 171 (2018).","ista":"Lee J, Schnelli K. 2018. Local law and Tracy–Widom limit for sparse random matrices. Probability Theory and Related Fields. 171(1–2), 543–616.","apa":"Lee, J., &#38; Schnelli, K. (2018). Local law and Tracy–Widom limit for sparse random matrices. <i>Probability Theory and Related Fields</i>. Springer. <a href=\"https://doi.org/10.1007/s00440-017-0787-8\">https://doi.org/10.1007/s00440-017-0787-8</a>","mla":"Lee, Jii, and Kevin Schnelli. “Local Law and Tracy–Widom Limit for Sparse Random Matrices.” <i>Probability Theory and Related Fields</i>, vol. 171, no. 1–2, 543–616, Springer, 2018, doi:<a href=\"https://doi.org/10.1007/s00440-017-0787-8\">10.1007/s00440-017-0787-8</a>.","ieee":"J. Lee and K. Schnelli, “Local law and Tracy–Widom limit for sparse random matrices,” <i>Probability Theory and Related Fields</i>, vol. 171, no. 1–2. Springer, 2018.","ama":"Lee J, Schnelli K. Local law and Tracy–Widom limit for sparse random matrices. <i>Probability Theory and Related Fields</i>. 2018;171(1-2). doi:<a href=\"https://doi.org/10.1007/s00440-017-0787-8\">10.1007/s00440-017-0787-8</a>","chicago":"Lee, Jii, and Kevin Schnelli. “Local Law and Tracy–Widom Limit for Sparse Random Matrices.” <i>Probability Theory and Related Fields</i>. Springer, 2018. <a href=\"https://doi.org/10.1007/s00440-017-0787-8\">https://doi.org/10.1007/s00440-017-0787-8</a>."},"ec_funded":1,"publication_status":"published","date_published":"2018-06-14T00:00:00Z","month":"06","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","fulldoi":"https://doi.org/10.1007/s00440-017-0787-8","publisher":"Springer","scopus_import":"1","publication":"Probability Theory and Related Fields","_id":"690","project":[{"name":"Random matrices, universality and disordered quantum systems","grant_number":"338804","call_identifier":"FP7","_id":"258DCDE6-B435-11E9-9278-68D0E5697425"}],"arxiv":1,"oa":1,"publist_id":"7017","date_updated":"2025-09-10T14:00:58Z","title":"Local law and Tracy–Widom limit for sparse random matrices","day":"14","language":[{"iso":"eng"}],"oa_version":"Preprint","intvolume":"       171","abstract":[{"lang":"eng","text":"We consider spectral properties and the edge universality of sparse random matrices, the class of random matrices that includes the adjacency matrices of the Erdős–Rényi graph model G(N, p). We prove a local law for the eigenvalue density up to the spectral edges. Under a suitable condition on the sparsity, we also prove that the rescaled extremal eigenvalues exhibit GOE Tracy–Widom fluctuations if a deterministic shift of the spectral edge due to the sparsity is included. For the adjacency matrix of the Erdős–Rényi graph this establishes the Tracy–Widom fluctuations of the second largest eigenvalue when p is much larger than N−2/3 with a deterministic shift of order (Np)−1."}],"article_number":"543-616","external_id":{"isi":["000432129600012"],"arxiv":["1605.08767"]},"year":"2018","isi":1,"quality_controlled":"1","author":[{"full_name":"Lee, Jii","first_name":"Jii","last_name":"Lee"},{"full_name":"Schnelli, Kevin","orcid":"0000-0003-0954-3231","last_name":"Schnelli","id":"434AD0AE-F248-11E8-B48F-1D18A9856A87","first_name":"Kevin"}],"date_created":"2018-12-11T11:47:56Z","issue":"1-2","main_file_link":[{"url":"https://arxiv.org/abs/1605.08767","open_access":"1"}],"type":"journal_article","status":"public","doi":"10.1007/s00440-017-0787-8"},{"quality_controlled":"1","page":"48 - 54","isi":1,"year":"2018","external_id":{"isi":["000418199800007"],"pmid":["28626029"]},"abstract":[{"lang":"eng","text":"Background: Transport protein particle (TRAPP) is a multisubunit complex that regulates membrane trafficking through the Golgi apparatus. The clinical phenotype associated with mutations in various TRAPP subunits has allowed elucidation of their functions in specific tissues. The role of some subunits in human disease, however, has not been fully established, and their functions remain uncertain.\r\n\r\nObjective: We aimed to expand the range of neurodevelopmental disorders associated with mutations in TRAPP subunits by exome sequencing of consanguineous families.\r\n\r\nMethods: Linkage and homozygosity mapping and candidate gene analysis were used to identify homozygous mutations in families. Patient fibroblasts were used to study splicing defect and zebrafish to model the disease.\r\n\r\nResults: We identified six individuals from three unrelated families with a founder homozygous splice mutation in TRAPPC6B, encoding a core subunit of the complex TRAPP I. Patients manifested a neurodevelopmental disorder characterised by microcephaly, epilepsy and autistic features, and showed splicing defect. Zebrafish trappc6b morphants replicated the human phenotype, displaying decreased head size and neuronal hyperexcitability, leading to a lower seizure threshold.\r\n\r\nConclusion: This study provides clinical and functional evidence of the role of TRAPPC6B in brain development and function."}],"intvolume":"        55","oa_version":"Submitted Version","language":[{"iso":"eng"}],"title":"A homozygous founder mutation in TRAPPC6B associates with a neurodevelopmental disorder characterised by microcephaly epilepsy and autistic features","publist_id":"7016","date_updated":"2025-04-15T07:50:28Z","day":"01","status":"public","doi":"10.1136/jmedgenet-2017-104627","type":"journal_article","issue":"1","main_file_link":[{"open_access":"1","url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6056005/"}],"date_created":"2018-12-11T11:47:57Z","author":[{"last_name":"Marin Valencia","first_name":"Isaac","full_name":"Marin Valencia, Isaac"},{"full_name":"Novarino, Gaia","first_name":"Gaia","id":"3E57A680-F248-11E8-B48F-1D18A9856A87","last_name":"Novarino","orcid":"0000-0002-7673-7178"},{"last_name":"Johansen","first_name":"Anide","full_name":"Johansen, Anide"},{"last_name":"Rosti","first_name":"Başak","full_name":"Rosti, Başak"},{"full_name":"Issa, Mahmoud","last_name":"Issa","first_name":"Mahmoud"},{"full_name":"Musaev, Damir","last_name":"Musaev","first_name":"Damir"},{"first_name":"Gifty","last_name":"Bhat","full_name":"Bhat, Gifty"},{"first_name":"Eric","last_name":"Scott","full_name":"Scott, Eric"},{"full_name":"Silhavy, Jennifer","last_name":"Silhavy","first_name":"Jennifer"},{"last_name":"Stanley","first_name":"Valentina","full_name":"Stanley, Valentina"},{"last_name":"Rosti","first_name":"Rasim","full_name":"Rosti, Rasim"},{"full_name":"Gleeson, Jeremy","last_name":"Gleeson","first_name":"Jeremy"},{"last_name":"Imam","first_name":"Farhad","full_name":"Imam, Farhad"},{"full_name":"Zaki, Maha","first_name":"Maha","last_name":"Zaki"},{"full_name":"Gleeson, Joseph","first_name":"Joseph","last_name":"Gleeson"}],"article_type":"original","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"01","publication_status":"published","date_published":"2018-01-01T00:00:00Z","citation":{"short":"I. Marin Valencia, G. Novarino, A. Johansen, B. Rosti, M. Issa, D. Musaev, G. Bhat, E. Scott, J. Silhavy, V. Stanley, R. Rosti, J. Gleeson, F. Imam, M. Zaki, J. Gleeson, Journal of Medical Genetics 55 (2018) 48–54.","ista":"Marin Valencia I, Novarino G, Johansen A, Rosti B, Issa M, Musaev D, Bhat G, Scott E, Silhavy J, Stanley V, Rosti R, Gleeson J, Imam F, Zaki M, Gleeson J. 2018. A homozygous founder mutation in TRAPPC6B associates with a neurodevelopmental disorder characterised by microcephaly epilepsy and autistic features. Journal of Medical Genetics. 55(1), 48–54.","apa":"Marin Valencia, I., Novarino, G., Johansen, A., Rosti, B., Issa, M., Musaev, D., … Gleeson, J. (2018). A homozygous founder mutation in TRAPPC6B associates with a neurodevelopmental disorder characterised by microcephaly epilepsy and autistic features. <i>Journal of Medical Genetics</i>. BMJ Publishing Group. <a href=\"https://doi.org/10.1136/jmedgenet-2017-104627\">https://doi.org/10.1136/jmedgenet-2017-104627</a>","mla":"Marin Valencia, Isaac, et al. “A Homozygous Founder Mutation in TRAPPC6B Associates with a Neurodevelopmental Disorder Characterised by Microcephaly Epilepsy and Autistic Features.” <i>Journal of Medical Genetics</i>, vol. 55, no. 1, BMJ Publishing Group, 2018, pp. 48–54, doi:<a href=\"https://doi.org/10.1136/jmedgenet-2017-104627\">10.1136/jmedgenet-2017-104627</a>.","ieee":"I. Marin Valencia <i>et al.</i>, “A homozygous founder mutation in TRAPPC6B associates with a neurodevelopmental disorder characterised by microcephaly epilepsy and autistic features,” <i>Journal of Medical Genetics</i>, vol. 55, no. 1. BMJ Publishing Group, pp. 48–54, 2018.","chicago":"Marin Valencia, Isaac, Gaia Novarino, Anide Johansen, Başak Rosti, Mahmoud Issa, Damir Musaev, Gifty Bhat, et al. “A Homozygous Founder Mutation in TRAPPC6B Associates with a Neurodevelopmental Disorder Characterised by Microcephaly Epilepsy and Autistic Features.” <i>Journal of Medical Genetics</i>. BMJ Publishing Group, 2018. <a href=\"https://doi.org/10.1136/jmedgenet-2017-104627\">https://doi.org/10.1136/jmedgenet-2017-104627</a>.","ama":"Marin Valencia I, Novarino G, Johansen A, et al. A homozygous founder mutation in TRAPPC6B associates with a neurodevelopmental disorder characterised by microcephaly epilepsy and autistic features. <i>Journal of Medical Genetics</i>. 2018;55(1):48-54. doi:<a href=\"https://doi.org/10.1136/jmedgenet-2017-104627\">10.1136/jmedgenet-2017-104627</a>"},"volume":55,"article_processing_charge":"No","department":[{"_id":"GaNo"}],"oa":1,"project":[{"_id":"254BA948-B435-11E9-9278-68D0E5697425","name":"Probing development and reversibility of autism spectrum disorders","grant_number":"401299"}],"_id":"691","pmid":1,"publication_identifier":{"issn":["0022-2593"]},"publication":"Journal of Medical Genetics","publisher":"BMJ Publishing Group","scopus_import":"1","fulldoi":"https://doi.org/10.1136/jmedgenet-2017-104627"},{"external_id":{"isi":["000431418800004"]},"year":"2018","page":"55 - 64","isi":1,"quality_controlled":"1","date_updated":"2025-04-15T06:50:29Z","title":"3-Webs generated by confocal conics and circles","publist_id":"7014","day":"01","language":[{"iso":"eng"}],"oa_version":"Published Version","intvolume":"       194","file":[{"file_size":1140860,"relation":"main_file","access_level":"open_access","date_updated":"2020-07-14T12:47:44Z","file_name":"2018_Springer_Akopyan.pdf","date_created":"2020-01-03T11:35:08Z","checksum":"1febcfc1266486053a069e3425ea3713","content_type":"application/pdf","creator":"kschuh","file_id":"7222"}],"abstract":[{"text":"We consider families of confocal conics and two pencils of Apollonian circles having the same foci. We will show that these families of curves generate trivial 3-webs and find the exact formulas describing them.","lang":"eng"}],"type":"journal_article","status":"public","file_date_updated":"2020-07-14T12:47:44Z","doi":"10.1007/s10711-017-0265-6","ddc":["510"],"author":[{"orcid":"0000-0002-2548-617X","last_name":"Akopyan","id":"430D2C90-F248-11E8-B48F-1D18A9856A87","first_name":"Arseniy","full_name":"Akopyan, Arseniy"}],"tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"corr_author":"1","date_created":"2018-12-11T11:47:57Z","issue":"1","publication_status":"published","date_published":"2018-06-01T00:00:00Z","month":"06","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","article_type":"original","article_processing_charge":"Yes (via OA deal)","department":[{"_id":"HeEd"}],"volume":194,"citation":{"ieee":"A. Akopyan, “3-Webs generated by confocal conics and circles,” <i>Geometriae Dedicata</i>, vol. 194, no. 1. Springer, pp. 55–64, 2018.","ista":"Akopyan A. 2018. 3-Webs generated by confocal conics and circles. Geometriae Dedicata. 194(1), 55–64.","apa":"Akopyan, A. (2018). 3-Webs generated by confocal conics and circles. <i>Geometriae Dedicata</i>. Springer. <a href=\"https://doi.org/10.1007/s10711-017-0265-6\">https://doi.org/10.1007/s10711-017-0265-6</a>","mla":"Akopyan, Arseniy. “3-Webs Generated by Confocal Conics and Circles.” <i>Geometriae Dedicata</i>, vol. 194, no. 1, Springer, 2018, pp. 55–64, doi:<a href=\"https://doi.org/10.1007/s10711-017-0265-6\">10.1007/s10711-017-0265-6</a>.","short":"A. Akopyan, Geometriae Dedicata 194 (2018) 55–64.","ama":"Akopyan A. 3-Webs generated by confocal conics and circles. <i>Geometriae Dedicata</i>. 2018;194(1):55-64. doi:<a href=\"https://doi.org/10.1007/s10711-017-0265-6\">10.1007/s10711-017-0265-6</a>","chicago":"Akopyan, Arseniy. “3-Webs Generated by Confocal Conics and Circles.” <i>Geometriae Dedicata</i>. Springer, 2018. <a href=\"https://doi.org/10.1007/s10711-017-0265-6\">https://doi.org/10.1007/s10711-017-0265-6</a>."},"ec_funded":1,"project":[{"_id":"25681D80-B435-11E9-9278-68D0E5697425","grant_number":"291734","name":"International IST Postdoc Fellowship Programme","call_identifier":"FP7"}],"oa":1,"has_accepted_license":"1","fulldoi":"https://doi.org/10.1007/s10711-017-0265-6","publisher":"Springer","scopus_import":"1","publication":"Geometriae Dedicata","_id":"692"},{"user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","month":"12","date_published":"2018-12-07T00:00:00Z","publication_status":"published","citation":{"short":"S. Park, A. Kwon, G. Fuchsbauer, P. Gazi, J.F. Alwen, K.Z. Pietrzak, in:, 22nd International Conference on Financial Cryptography and Data Security, Springer Nature, 2018, pp. 480–499.","apa":"Park, S., Kwon, A., Fuchsbauer, G., Gazi, P., Alwen, J. F., &#38; Pietrzak, K. Z. (2018). SpaceMint: A cryptocurrency based on proofs of space. In <i>22nd International Conference on Financial Cryptography and Data Security</i> (Vol. 10957, pp. 480–499). Nieuwpoort, Curacao: Springer Nature. <a href=\"https://doi.org/10.1007/978-3-662-58387-6_26\">https://doi.org/10.1007/978-3-662-58387-6_26</a>","ista":"Park S, Kwon A, Fuchsbauer G, Gazi P, Alwen JF, Pietrzak KZ. 2018. SpaceMint: A cryptocurrency based on proofs of space. 22nd International Conference on Financial Cryptography and Data Security. FC: Financial Cryptography and Data Security, LNCS, vol. 10957, 480–499.","mla":"Park, Sunoo, et al. “SpaceMint: A Cryptocurrency Based on Proofs of Space.” <i>22nd International Conference on Financial Cryptography and Data Security</i>, vol. 10957, Springer Nature, 2018, pp. 480–99, doi:<a href=\"https://doi.org/10.1007/978-3-662-58387-6_26\">10.1007/978-3-662-58387-6_26</a>.","ieee":"S. Park, A. Kwon, G. Fuchsbauer, P. Gazi, J. F. Alwen, and K. Z. Pietrzak, “SpaceMint: A cryptocurrency based on proofs of space,” in <i>22nd International Conference on Financial Cryptography and Data Security</i>, Nieuwpoort, Curacao, 2018, vol. 10957, pp. 480–499.","chicago":"Park, Sunoo, Albert Kwon, Georg Fuchsbauer, Peter Gazi, Joel F Alwen, and Krzysztof Z Pietrzak. “SpaceMint: A Cryptocurrency Based on Proofs of Space.” In <i>22nd International Conference on Financial Cryptography and Data Security</i>, 10957:480–99. Springer Nature, 2018. <a href=\"https://doi.org/10.1007/978-3-662-58387-6_26\">https://doi.org/10.1007/978-3-662-58387-6_26</a>.","ama":"Park S, Kwon A, Fuchsbauer G, Gazi P, Alwen JF, Pietrzak KZ. SpaceMint: A cryptocurrency based on proofs of space. In: <i>22nd International Conference on Financial Cryptography and Data Security</i>. Vol 10957. Springer Nature; 2018:480-499. doi:<a href=\"https://doi.org/10.1007/978-3-662-58387-6_26\">10.1007/978-3-662-58387-6_26</a>"},"ec_funded":1,"volume":10957,"department":[{"_id":"KrPi"}],"article_processing_charge":"No","oa":1,"project":[{"grant_number":"682815","name":"Teaching Old Crypto New Tricks","call_identifier":"H2020","_id":"258AA5B2-B435-11E9-9278-68D0E5697425"}],"publication_identifier":{"isbn":["9783662583869"],"issn":["0302-9743"],"eissn":["1611-3349"],"eisbn":["9783662583876"]},"_id":"6941","publication":"22nd International Conference on Financial Cryptography and Data Security","scopus_import":"1","publisher":"Springer Nature","fulldoi":"https://doi.org/10.1007/978-3-662-58387-6_26","quality_controlled":"1","page":"480-499","isi":1,"year":"2018","external_id":{"isi":["000540656400026"]},"abstract":[{"text":"Bitcoin has become the most successful cryptocurrency ever deployed, and its most distinctive feature is that it is decentralized. Its underlying protocol (Nakamoto consensus) achieves this by using proof of work, which has the drawback that it causes the consumption of vast amounts of energy to maintain the ledger. Moreover, Bitcoin mining dynamics have become less distributed over time.\r\n\r\nTowards addressing these issues, we propose SpaceMint, a cryptocurrency based on proofs of space instead of proofs of work. Miners in SpaceMint dedicate disk space rather than computation. We argue that SpaceMint’s design solves or alleviates several of Bitcoin’s issues: most notably, its large energy consumption. SpaceMint also rewards smaller miners fairly according to their contribution to the network, thus incentivizing more distributed participation.\r\n\r\nThis paper adapts proof of space to enable its use in cryptocurrency, studies the attacks that can arise against a Bitcoin-like blockchain that uses proof of space, and proposes a new blockchain format and transaction types to address these attacks. Our prototype shows that initializing 1 TB for mining takes about a day (a one-off setup cost), and miners spend on average just a fraction of a second per block mined. Finally, we provide a game-theoretic analysis modeling SpaceMint as an extensive game (the canonical game-theoretic notion for games that take place over time) and show that this stylized game satisfies a strong equilibrium notion, thereby arguing for SpaceMint ’s stability and consensus.","lang":"eng"}],"intvolume":"     10957","language":[{"iso":"eng"}],"oa_version":"Submitted Version","date_updated":"2026-04-16T10:30:49Z","title":"SpaceMint: A cryptocurrency based on proofs of space","day":"07","conference":{"location":"Nieuwpoort, Curacao","start_date":"2018-02-26","name":"FC: Financial Cryptography and Data Security","end_date":"2018-03-02"},"doi":"10.1007/978-3-662-58387-6_26","status":"public","type":"conference","main_file_link":[{"open_access":"1","url":"https://eprint.iacr.org/2015/528"}],"date_created":"2019-10-14T06:35:38Z","alternative_title":["LNCS"],"author":[{"first_name":"Sunoo","last_name":"Park","full_name":"Park, Sunoo"},{"full_name":"Kwon, Albert","last_name":"Kwon","first_name":"Albert"},{"full_name":"Fuchsbauer, Georg","last_name":"Fuchsbauer","first_name":"Georg","id":"46B4C3EE-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Gazi","id":"3E0BFE38-F248-11E8-B48F-1D18A9856A87","first_name":"Peter","full_name":"Gazi, Peter"},{"id":"2A8DFA8C-F248-11E8-B48F-1D18A9856A87","first_name":"Joel F","last_name":"Alwen","full_name":"Alwen, Joel F"},{"orcid":"0000-0002-9139-1654","last_name":"Pietrzak","first_name":"Krzysztof Z","id":"3E04A7AA-F248-11E8-B48F-1D18A9856A87","full_name":"Pietrzak, Krzysztof Z"}]}]
